Your job contains 1 sequence.
>030170
MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE
GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD
YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCENP
LD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030170
(182 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130060 - symbol:NRPE7 species:3702 "Arabidops... 691 4.4e-68 1
TAIR|locus:2084573 - symbol:NRPD7 species:3702 "Arabidops... 537 9.2e-52 1
TAIR|locus:2168514 - symbol:NRPB7 species:3702 "Arabidops... 210 4.1e-17 1
WB|WBGene00021845 - symbol:rpb-7 species:6239 "Caenorhabd... 203 2.3e-16 1
DICTYBASE|DDB_G0284891 - symbol:rpb7 "DNA-directed RNA po... 196 1.3e-15 1
ZFIN|ZDB-GENE-030131-2808 - symbol:polr2gl "polymerase (R... 195 1.6e-15 1
UNIPROTKB|Q5E9B8 - symbol:POLR2G "DNA-directed RNA polyme... 194 2.0e-15 1
UNIPROTKB|P62487 - symbol:POLR2G "DNA-directed RNA polyme... 194 2.0e-15 1
UNIPROTKB|I3LJZ9 - symbol:POLR2G "Uncharacterized protein... 194 2.0e-15 1
MGI|MGI:1914960 - symbol:Polr2g "polymerase (RNA) II (DNA... 194 2.0e-15 1
RGD|621284 - symbol:Polr2g "polymerase (RNA) II (DNA dire... 194 2.0e-15 1
FB|FBgn0051155 - symbol:Rpb7 "Rpb7" species:7227 "Drosoph... 193 2.6e-15 1
CGD|CAL0004143 - symbol:RPB7 species:5476 "Candida albica... 187 1.1e-14 1
UNIPROTKB|Q5A8Y7 - symbol:RPB7 "Likely RNA Pol II core co... 187 1.1e-14 1
POMBASE|SPACUNK4.06c - symbol:rpb7 "DNA-directed RNA poly... 169 9.1e-13 1
SGD|S000002812 - symbol:RPB7 "RNA polymerase II subunit B... 167 1.5e-12 1
ASPGD|ASPL0000041983 - symbol:AN1521 species:162425 "Emer... 158 1.3e-11 1
GENEDB_PFALCIPARUM|PF10_0269 - symbol:PF10_0269 "DNA-dire... 157 1.7e-11 1
UNIPROTKB|Q8IJC9 - symbol:PF10_0269 "DNA-directed RNA pol... 157 1.7e-11 1
UNIPROTKB|G4NBQ8 - symbol:MGG_17442 "Uncharacterized prot... 144 4.1e-10 1
UNIPROTKB|F1PT38 - symbol:POLR2G "Uncharacterized protein... 135 3.6e-09 1
DICTYBASE|DDB_G0273523 - symbol:rpc25-2 "RNA polymerase I... 104 0.00096 1
DICTYBASE|DDB_G0273425 - symbol:rpc25-1 "RNA polymerase I... 104 0.00096 1
>TAIR|locus:2130060 [details] [associations]
symbol:NRPE7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000419
Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT030624 IPI:IPI00536833
RefSeq:NP_193202.2 UniGene:At.49694 ProteinModelPortal:A6QRA1
STRING:A6QRA1 PaxDb:A6QRA1 PRIDE:A6QRA1 EnsemblPlants:AT4G14660.1
GeneID:827116 KEGG:ath:AT4G14660 TAIR:At4g14660 eggNOG:NOG264504
HOGENOM:HOG000241228 InParanoid:A6QRA1 KO:K16253 OMA:KVQLPWN
PhylomeDB:A6QRA1 ProtClustDB:CLSN2688679 Genevestigator:A6QRA1
Uniprot:A6QRA1
Length = 178
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 120/178 (67%), Positives = 159/178 (89%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAEN+DAKG ML+R+I+V LL+ FA +KATK+LGY++AVTTL+ IGE
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++RE+TGEVLFPV+FSG+TFKIF+GE++ G VHKVLKHGVF++CGP+EN+YL+ +KMPD
Sbjct: 61 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
Y+Y+ ENP+F++EK +I+ + VRV+VIG KW+E EREFQAL SLEGD+LGP+S E
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSEE 178
>TAIR|locus:2084573 [details] [associations]
symbol:NRPD7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000418
"DNA-directed RNA polymerase IV complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000418
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000241228 KO:K16253
ProtClustDB:CLSN2688679 EMBL:AY085637 IPI:IPI00522501
RefSeq:NP_566719.1 UniGene:At.37797 ProteinModelPortal:Q8LE42
STRING:Q8LE42 PaxDb:Q8LE42 PRIDE:Q8LE42 EnsemblPlants:AT3G22900.1
GeneID:821862 KEGG:ath:AT3G22900 TAIR:At3g22900 eggNOG:NOG327805
InParanoid:Q8LE42 OMA:RIQIGAR PhylomeDB:Q8LE42
Genevestigator:Q8LE42 Uniprot:Q8LE42
Length = 174
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 99/174 (56%), Positives = 134/174 (77%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+KVKLPW+V +PAE++D G MLQR+IV+RLL+ F++ KATKDLGY + T LENIGE
Sbjct: 1 MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 59
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+++E TGE+ FPVVF+GI FK+F+GE++ G VHKV K GVFLK GP E IYL+ KMP
Sbjct: 60 GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 119
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
Y ++ ENP F+++ +I+ VR +V+ T+W EAE++F AL S++GD LGP
Sbjct: 120 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173
>TAIR|locus:2168514 [details] [associations]
symbol:NRPB7 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IPI] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB016890
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 EMBL:M90505 EMBL:BT005667 IPI:IPI00518175 PIR:A44457
RefSeq:NP_200726.1 UniGene:At.29242 ProteinModelPortal:P38421
SMR:P38421 STRING:P38421 PaxDb:P38421 PRIDE:P38421
EnsemblPlants:AT5G59180.1 GeneID:836036 KEGG:ath:AT5G59180
TAIR:At5g59180 eggNOG:COG1095 HOGENOM:HOG000158201
InParanoid:P38421 OMA:TRVDAND PhylomeDB:P38421
ProtClustDB:CLSN2686299 Genevestigator:P38421 GermOnline:AT5G59180
Gene3D:3.30.1490.120 SUPFAM:SSF88798 Uniprot:P38421
Length = 176
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 52/157 (33%), Positives = 96/157 (61%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ ++V +L+ D + + G+ +A+T ++ IG+G +R+ TG V FPV + + F
Sbjct: 19 GRNLKENLVSKLMKDVEGTCSGRH-GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQA-ENPVFL-SEKNPKI 139
+ F+GE+L+ V V K G F + GPV+ I+++ +PD QA + P + S+ + KI
Sbjct: 78 RPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+K+ VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 137 QKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171
>WB|WBGene00021845 [details] [associations]
symbol:rpb-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004601 "peroxidase activity"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0043652 "engulfment of apoptotic
cell" evidence=IMP] InterPro:IPR003029 InterPro:IPR005576
Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043652 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 GO:GO:0001703 KO:K03015 eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 GeneTree:ENSGT00390000008975 EMBL:FO081636
RefSeq:NP_491093.1 HSSP:Q57840 ProteinModelPortal:Q9N3C9 SMR:Q9N3C9
STRING:Q9N3C9 PaxDb:Q9N3C9 EnsemblMetazoa:Y54E10BR.6 GeneID:171877
KEGG:cel:CELE_Y54E10BR.6 UCSC:Y54E10BR.6 CTD:171877
WormBase:Y54E10BR.6 InParanoid:Q9N3C9 NextBio:873067 Uniprot:Q9N3C9
Length = 197
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 52/159 (32%), Positives = 84/159 (52%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L +I ++L ++ T G+ +AVTT++ IG G ++ G V++PV + I F
Sbjct: 42 GPNLNETIKMKLFNE-VEGTCTGKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVF 100
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPK-I 139
+ F+G+V+DG V +V K G+F GP+ PD + +E P + + I
Sbjct: 101 RPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEANVI 160
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
D +RV +IGT+ ++A F A+ +L DFLG E
Sbjct: 161 RNDDEIRVKLIGTR-VDANDIF-AIGTLMDDFLGLCQAE 197
>DICTYBASE|DDB_G0284891 [details] [associations]
symbol:rpb7 "DNA-directed RNA polymerase II subunit
7" species:44689 "Dictyostelium discoideum" [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IGI] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 dictyBase:DDB_G0284891 GenomeReviews:CM000153_GR
EMBL:AAFI02000073 GO:GO:0003723 GO:GO:0006366 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016591
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
RefSeq:XP_639913.1 HSSP:P62487 ProteinModelPortal:Q54P04 SMR:Q54P04
STRING:Q54P04 PRIDE:Q54P04 EnsemblProtists:DDB0216295
GeneID:8624825 KEGG:ddi:DDB_G0284891 OMA:HAIGSIK
ProtClustDB:PTZ00162 Uniprot:Q54P04
Length = 172
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 53/157 (33%), Positives = 89/157 (56%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L +I + L T G+ + +T+++ + +G+V E++G V+F V + I F
Sbjct: 19 GPNLF-TIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN--PVFLSEK-NPK 138
K F+GEVLD V KV G F + GP+ +I+++ +P A++ P F+SE + K
Sbjct: 78 KPFKGEVLDAIVTKVTNLGFFAEAGPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSK 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I KD VR+ + GT+ ++A F A+ S+ D+LG +
Sbjct: 137 ISKDDEVRLQIKGTR-VDATEIF-AIGSIREDYLGVI 171
>ZFIN|ZDB-GENE-030131-2808 [details] [associations]
symbol:polr2gl "polymerase (RNA) II (DNA directed)
polypeptide G-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
ZFIN:ZDB-GENE-030131-2808 GO:GO:0006468 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
HOVERGEN:HBG055233 OrthoDB:EOG451DRZ EMBL:BC045299 IPI:IPI00493928
RefSeq:NP_955963.1 UniGene:Dr.2883 ProteinModelPortal:Q7ZW41
SMR:Q7ZW41 STRING:Q7ZW41 PRIDE:Q7ZW41 Ensembl:ENSDART00000078557
GeneID:324088 KEGG:dre:324088 CTD:324088 InParanoid:Q7ZW41
NextBio:20808583 Bgee:Q7ZW41 Uniprot:Q7ZW41
Length = 172
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 49/158 (31%), Positives = 89/158 (56%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPK 138
+ F+GEV+D V +V K G+F + GP+ + +++ +P + + NP +++
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTVDEDVV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 137 IQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
>UNIPROTKB|Q5E9B8 [details] [associations]
symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 GO:GO:0003723
GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201
OMA:TRVDAND Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT021002
IPI:IPI00688959 RefSeq:NP_001015633.1 UniGene:Bt.9092
ProteinModelPortal:Q5E9B8 SMR:Q5E9B8 STRING:Q5E9B8
Ensembl:ENSBTAT00000012481 GeneID:526320 KEGG:bta:526320 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 InParanoid:Q5E9B8
OrthoDB:EOG451DRZ NextBio:20874346 Uniprot:Q5E9B8
Length = 172
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 49/158 (31%), Positives = 89/158 (56%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPK 138
+ F+GEV+D V +V K G+F + GP+ + +++ +P + + NP +++
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEDIV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 137 IQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
>UNIPROTKB|P62487 [details] [associations]
symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 Reactome:REACT_116125
GO:GO:0006915 GO:GO:0016032 EMBL:CH471076 Reactome:REACT_1675
GO:GO:0006468 GO:GO:0003723 GO:GO:0006368 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 PDB:2C35 PDBsum:2C35 eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 CTD:5436 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:U20659 EMBL:U52427 EMBL:AK312131 EMBL:BC112162 EMBL:BC112164
IPI:IPI00218895 RefSeq:NP_002687.1 UniGene:Hs.14839
ProteinModelPortal:P62487 SMR:P62487 DIP:DIP-32663N IntAct:P62487
MINT:MINT-1033626 STRING:P62487 PhosphoSite:P62487 DMDM:50403601
PaxDb:P62487 PeptideAtlas:P62487 PRIDE:P62487
Ensembl:ENST00000301788 GeneID:5436 KEGG:hsa:5436 UCSC:uc001nva.3
GeneCards:GC11P062529 HGNC:HGNC:9194 MIM:602013 neXtProt:NX_P62487
PharmGKB:PA33514 InParanoid:P62487 PhylomeDB:P62487
EvolutionaryTrace:P62487 GenomeRNAi:5436 NextBio:21033
ArrayExpress:P62487 Bgee:P62487 CleanEx:HS_POLR2G
Genevestigator:P62487 GermOnline:ENSG00000168002 Uniprot:P62487
Length = 172
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 49/158 (31%), Positives = 89/158 (56%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPK 138
+ F+GEV+D V +V K G+F + GP+ + +++ +P + + NP +++
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEDIV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 137 IQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
>UNIPROTKB|I3LJZ9 [details] [associations]
symbol:POLR2G "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
GO:GO:0003723 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
EMBL:FP312617 RefSeq:XP_003353863.1 ProteinModelPortal:I3LJZ9
SMR:I3LJZ9 Ensembl:ENSSSCT00000022560 GeneID:100620235
KEGG:ssc:100620235 Uniprot:I3LJZ9
Length = 172
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 49/158 (31%), Positives = 89/158 (56%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPK 138
+ F+GEV+D V +V K G+F + GP+ + +++ +P + + NP +++
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEDIV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 137 IQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
>MGI|MGI:1914960 [details] [associations]
symbol:Polr2g "polymerase (RNA) II (DNA directed)
polypeptide G" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
MGI:MGI:1914960 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:AK010687 EMBL:AK011627 EMBL:AK013134 EMBL:AK017473
EMBL:BC005580 EMBL:BC055278 IPI:IPI00263106 RefSeq:NP_080605.1
UniGene:Mm.22117 ProteinModelPortal:P62488 SMR:P62488 STRING:P62488
PhosphoSite:P62488 REPRODUCTION-2DPAGE:P62488 PaxDb:P62488
PRIDE:P62488 Ensembl:ENSMUST00000096261 GeneID:67710 KEGG:mmu:67710
UCSC:uc008gna.1 InParanoid:P62488 NextBio:325333 Bgee:P62488
CleanEx:MM_POLR2G Genevestigator:P62488
GermOnline:ENSMUSG00000071662 Uniprot:P62488
Length = 172
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 49/158 (31%), Positives = 89/158 (56%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPK 138
+ F+GEV+D V +V K G+F + GP+ + +++ +P + + NP +++
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEDIV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 137 IQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
>RGD|621284 [details] [associations]
symbol:Polr2g "polymerase (RNA) II (DNA directed) polypeptide G"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=ISO;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISO;ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=IEP] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 RGD:621284 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:Z71925 EMBL:BC060550 EMBL:BC060595 IPI:IPI00326378
RefSeq:NP_446400.1 UniGene:Rn.106248 ProteinModelPortal:P62489
SMR:P62489 STRING:P62489 PRIDE:P62489 Ensembl:ENSRNOT00000026313
GeneID:117017 KEGG:rno:117017 UCSC:RGD:621284 InParanoid:P62489
NextBio:619759 Genevestigator:P62489 GermOnline:ENSRNOG00000019439
Uniprot:P62489
Length = 172
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 49/158 (31%), Positives = 89/158 (56%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPK 138
+ F+GEV+D V +V K G+F + GP+ + +++ +P + + NP +++
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEDIV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 137 IQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
>FB|FBgn0051155 [details] [associations]
symbol:Rpb7 "Rpb7" species:7227 "Drosophila melanogaster"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS;IPI] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:AE014297
GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 eggNOG:COG1095 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
EMBL:BT023312 EMBL:BT029405 RefSeq:NP_731983.1 UniGene:Dm.35954
UniGene:Dm.4143 SMR:Q9VFB5 STRING:Q9VFB5 EnsemblMetazoa:FBtr0083137
GeneID:261631 KEGG:dme:Dmel_CG31155 UCSC:CG31155-RA CTD:261631
FlyBase:FBgn0051155 InParanoid:Q9VFB5 OrthoDB:EOG46Q58R
GenomeRNAi:261631 NextBio:843782 Uniprot:Q9VFB5
Length = 173
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 49/158 (31%), Positives = 88/158 (55%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++ IG G ++ G V++PV + I F
Sbjct: 19 GPQLLETVKQKLYSE-VEGTCTGKYGFVIAVTTIDQIGSGVIQPGQGFVVYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-- 138
+ F+GEVLD V ++ K G+F + GP+ + +++ +P D ++ NP K+
Sbjct: 78 RPFKGEVLDAVVKQINKVGMFAEIGPL-SCFISHHSIPADMQFCPNGNPPCYKSKDEDVV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I + +R+ ++GT+ ++A F A+ +L D+LG VS
Sbjct: 137 ISGEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLGLVS 172
>CGD|CAL0004143 [details] [associations]
symbol:RPB7 species:5476 "Candida albicans" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;IGI;ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IGI;ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IGI;ISS] [GO:0042493 "response to drug"
evidence=IMP] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0000291 "nuclear-transcribed
mRNA catabolic process, exonucleolytic" evidence=IEA] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
Length = 173
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 49/156 (31%), Positives = 81/156 (51%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ +TG F V + +
Sbjct: 19 GPQMDQYLREKLLSD-VEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>UNIPROTKB|Q5A8Y7 [details] [associations]
symbol:RPB7 "Likely RNA Pol II core complex subunit"
species:237561 "Candida albicans SC5314" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IGI] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IGI] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0042493 "response to drug" evidence=IMP] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
Length = 173
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 49/156 (31%), Positives = 81/156 (51%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ +TG F V + +
Sbjct: 19 GPQMDQYLREKLLSD-VEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>POMBASE|SPACUNK4.06c [details] [associations]
symbol:rpb7 "DNA-directed RNA polymerase complex II
subunit Rpb7" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=TAS] [GO:0016591 "DNA-directed
RNA polymerase II, holoenzyme" evidence=IC] [GO:0031123 "RNA 3'-end
processing" evidence=IPI] [GO:0097394 "telomeric RNA transcription
from RNA pol II promoter" evidence=IMP] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IDA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PomBase:SPACUNK4.06c
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
GO:GO:0016591 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0031123 PDB:3H0G PDBsum:3H0G eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 EMBL:D89594 EMBL:D86554 EMBL:AF027821 EMBL:AF055916
PIR:T39254 RefSeq:XP_001713072.1 ProteinModelPortal:O14459
IntAct:O14459 MINT:MINT-1213963 STRING:O14459
EnsemblFungi:SPACUNK4.06c.1 GeneID:2542097 KEGG:spo:SPACUNK4.06c
OrthoDB:EOG4JT3FQ EvolutionaryTrace:O14459 NextBio:20803169
GO:GO:0097394 Uniprot:O14459
Length = 172
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 49/156 (31%), Positives = 82/156 (52%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAV---TTLENIGEGRVRENTGEVLFPVVFSG 78
GP +Q + +LL D + GY + V T++ I +GRV G F V +
Sbjct: 20 GPRMQDYLKAKLLAD-VEGTCSGQYGYIICVLDSNTID-IDKGRVVPGQGFAEFEVKYRA 77
Query: 79 ITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNP 137
+ ++ FRGEV+D V V K G F GP+ N++++ +P D ++ NP S ++
Sbjct: 78 VLWRPFRGEVVDAIVTTVNKMGFFANIGPL-NVFVSSHLVPPDMKFDPTANPPNYSGEDQ 136
Query: 138 KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
IEK VR+ ++GT+ +A F A+ +++ D+LG
Sbjct: 137 VIEKGSNVRLKIVGTR-TDATEIF-AIATMKEDYLG 170
>SGD|S000002812 [details] [associations]
symbol:RPB7 "RNA polymerase II subunit B16" species:4932
"Saccharomyces cerevisiae" [GO:0003727 "single-stranded RNA
binding" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045948 "positive regulation of
translational initiation" evidence=IMP] [GO:0031369 "translation
initiation factor binding" evidence=IPI] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IGI] [GO:0003697
"single-stranded DNA binding" evidence=IMP;IDA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:0000291 "nuclear-transcribed mRNA catabolic process,
exonucleolytic" evidence=IGI] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IDA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 SGD:S000002812
GO:GO:0003727 EMBL:BK006938 GO:GO:0003697 GO:GO:0000932
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
EMBL:U32274 GO:GO:0045948 GO:GO:0060213 InterPro:IPR022967
SMART:SM00316 GO:GO:0003899 GO:GO:0000291 RefSeq:NP_010692.3
GeneID:852013 KEGG:sce:YDR404C KO:K03015 GO:GO:0005665 KO:K00601
RefSeq:NP_010696.3 GeneID:852017 KEGG:sce:YDR408C PDB:1NT9 PDB:1PQV
PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K
PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2R7Z PDB:2R92 PDB:2R93
PDB:2VUM PDB:3FKI PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3PO2 PDB:3PO3
PDB:3QT1 PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G
PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR
PDB:4BBS PDBsum:1NT9 PDBsum:1PQV PDBsum:1WCM PDBsum:1Y1V
PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:3FKI PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS PDB:1Y14 PDBsum:1Y14 eggNOG:COG1095
HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GeneTree:ENSGT00390000008975 OMA:HAIGSIK OrthoDB:EOG4JT3FQ
EMBL:S59775 PIR:S30140 ProteinModelPortal:P34087 SMR:P34087
DIP:DIP-725N IntAct:P34087 MINT:MINT-539630 STRING:P34087
PaxDb:P34087 PeptideAtlas:P34087 EnsemblFungi:YDR404C CYGD:YDR404c
EvolutionaryTrace:P34087 NextBio:970216 Genevestigator:P34087
GermOnline:YDR404C Uniprot:P34087
Length = 171
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 45/157 (28%), Positives = 75/157 (47%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGI 79
GP +++ + +LL++ T GY L V +NI GR+ G F V + +
Sbjct: 19 GPRMKQYLKTKLLEE-VEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
FK F+GEV+DGTV +HG ++ GP++ +++T MP D + NP
Sbjct: 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQDLTFNAGSNPPSYQSSEDV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I +RV + G + A+ S++ D+LG +
Sbjct: 137 ITIKSRIRVKIEGC--ISQVSSIHAIGSIKEDYLGAI 171
>ASPGD|ASPL0000041983 [details] [associations]
symbol:AN1521 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0031123 "RNA 3'-end
processing" evidence=IEA] [GO:0097394 "telomeric RNA transcription
from RNA pol II promoter" evidence=IEA] [GO:0000291
"nuclear-transcribed mRNA catabolic process, exonucleolytic"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:BN001307
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 eggNOG:COG1095 HOGENOM:HOG000158201 Gene3D:3.30.1490.120
SUPFAM:SSF88798 OMA:HAIGSIK OrthoDB:EOG4JT3FQ EMBL:AACD01000024
RefSeq:XP_659125.1 STRING:Q5BD59 EnsemblFungi:CADANIAT00008149
GeneID:2875079 KEGG:ani:AN1521.2 Uniprot:Q5BD59
Length = 169
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 44/156 (28%), Positives = 80/156 (51%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV G+ + + + I +
Sbjct: 19 GPNVREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPGNGQAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYV-QAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D R+ P + + I
Sbjct: 77 KPFRGETVDALVTSVKPTGIFTLAGPL-SVFIARKNIPSDIRWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
EK +R+ ++G K A A+ +++ D+LGP+
Sbjct: 136 EKGTSLRLKILGVKPDVAA--INAIGTIKEDYLGPL 169
>GENEDB_PFALCIPARUM|PF10_0269 [details] [associations]
symbol:PF10_0269 "DNA-directed RNA polymerase
II, putative" species:5833 "Plasmodium falciparum" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE014185 GO:GO:0003899
KO:K03015 GO:GO:0005665 HOGENOM:HOG000158201 Gene3D:3.30.1490.120
SUPFAM:SSF88798 OMA:HAIGSIK ProtClustDB:PTZ00162
RefSeq:XP_001347553.1 ProteinModelPortal:Q8IJC9
EnsemblProtists:PF10_0269:mRNA GeneID:810426 KEGG:pfa:PF10_0269
EuPathDB:PlasmoDB:PF3D7_1027400 Uniprot:Q8IJC9
Length = 177
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 49/168 (29%), Positives = 85/168 (50%)
Query: 9 W-NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENT 67
W NV++ L GP Q+ I L + + + K GY + V + + GRV++ T
Sbjct: 8 WKNVIIKPSQL---GPRYQQYIEDMLRNSVEGQCSVK-YGYVICVIRIIHSEPGRVQDGT 63
Query: 68 GEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY-RYVQ- 125
G ++ V + I FK F+ EVLD V V K G F + GP++ I+++ + +P Y Y +
Sbjct: 64 GMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLK-IFISRTAIPKYFEYSED 122
Query: 126 AENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
P F S + I+ VR+ + G ++ + F A+ ++ ++LG
Sbjct: 123 LHYPCF-SSGDYNIKPQTTVRIKLQGIRY-DLSNMF-AIATINNEYLG 167
>UNIPROTKB|Q8IJC9 [details] [associations]
symbol:PF10_0269 "DNA-directed RNA polymerase II, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AE014185 GO:GO:0003899 KO:K03015 GO:GO:0005665
HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
OMA:HAIGSIK ProtClustDB:PTZ00162 RefSeq:XP_001347553.1
ProteinModelPortal:Q8IJC9 EnsemblProtists:PF10_0269:mRNA
GeneID:810426 KEGG:pfa:PF10_0269 EuPathDB:PlasmoDB:PF3D7_1027400
Uniprot:Q8IJC9
Length = 177
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 49/168 (29%), Positives = 85/168 (50%)
Query: 9 W-NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENT 67
W NV++ L GP Q+ I L + + + K GY + V + + GRV++ T
Sbjct: 8 WKNVIIKPSQL---GPRYQQYIEDMLRNSVEGQCSVK-YGYVICVIRIIHSEPGRVQDGT 63
Query: 68 GEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY-RYVQ- 125
G ++ V + I FK F+ EVLD V V K G F + GP++ I+++ + +P Y Y +
Sbjct: 64 GMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLK-IFISRTAIPKYFEYSED 122
Query: 126 AENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
P F S + I+ VR+ + G ++ + F A+ ++ ++LG
Sbjct: 123 LHYPCF-SSGDYNIKPQTTVRIKLQGIRY-DLSNMF-AIATINNEYLG 167
>UNIPROTKB|G4NBQ8 [details] [associations]
symbol:MGG_17442 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 EMBL:CM001235 GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_003718550.1
ProteinModelPortal:G4NBQ8 EnsemblFungi:MGG_17442T0 GeneID:12984117
KEGG:mgr:MGG_17442 Uniprot:G4NBQ8
Length = 172
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G + +V RLL D D Y ++V +I G++ F V + + +
Sbjct: 19 GKNMHEIVVQRLLAD-TEGTCQGDF-YIISVMDAVDISPGKIVPGNAMAEFTVNYRAVVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
+ F+G+ +DG V V +HG F+ GP+ +++T P D Y A PVF + +
Sbjct: 77 RPFKGQTVDGIVDSVNQHGFFIAVGPLR-VFITKQMCPPDVIYDANASPPVFTDKDTWLV 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+ + R +IG + E + + A+ ++ DFLGP+
Sbjct: 136 DVGTLCRARIIGLR-SEVDTMW-AIGTVNEDFLGPL 169
>UNIPROTKB|F1PT38 [details] [associations]
symbol:POLR2G "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR005576 Pfam:PF03876 GO:GO:0006351
GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GeneTree:ENSGT00390000008975 EMBL:AAEX03011662
Ensembl:ENSCAFT00000024524 Uniprot:F1PT38
Length = 118
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLK 98
+ F+GEV+D V +V K
Sbjct: 78 RPFKGEVVDAVVTQVNK 94
>DICTYBASE|DDB_G0273523 [details] [associations]
symbol:rpc25-2 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 104 (41.7 bits), Expect = 0.00096, P = 0.00096
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 31 VRLLDDFARRKATKDL----GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
V+ ++D +K T + G F+A+ + G+ V G V F + FK F+G
Sbjct: 22 VQTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKG 81
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD-YRYVQAE 127
EVL+G + K + + + G IYL ++P+ Y Q E
Sbjct: 82 EVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQEE 123
>DICTYBASE|DDB_G0273425 [details] [associations]
symbol:rpc25-1 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 104 (41.7 bits), Expect = 0.00096, P = 0.00096
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 31 VRLLDDFARRKATKDL----GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
V+ ++D +K T + G F+A+ + G+ V G V F + FK F+G
Sbjct: 22 VQTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKG 81
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD-YRYVQAE 127
EVL+G + K + + + G IYL ++P+ Y Q E
Sbjct: 82 EVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQEE 123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.142 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 182 182 0.00098 109 3 11 22 0.41 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 590 (63 KB)
Total size of DFA: 152 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.95u 0.11s 16.06t Elapsed: 00:00:01
Total cpu time: 15.96u 0.11s 16.07t Elapsed: 00:00:01
Start: Fri May 10 11:35:44 2013 End: Fri May 10 11:35:45 2013