BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030170
(182 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224102153|ref|XP_002312568.1| predicted protein [Populus trichocarpa]
gi|222852388|gb|EEE89935.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/176 (82%), Positives = 166/176 (94%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAENLDAKG MLQRSIVVRLLDDFA++ ATKDLGY+LAV+TLE+IGE
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVFSGITFKIFRGE+LDG VHKVLKHGV L+CGP+ENIYL+C KMPD
Sbjct: 61 GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
YRYV ENPVFL++K KIEKDVVVR +V+GTKWLEAEREFQALVSLEGD+LGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176
>gi|255563208|ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223538083|gb|EEF39694.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/176 (80%), Positives = 165/176 (93%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+LKV+LPWNV++ AE+LDAKG MLQRSI++RLL+DFA +KATKDLGY+LAVTTLE+IGE
Sbjct: 1 MYLKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VRE+TG+VLFPVVF+GITFKIFRGE+L+G VHKVLKHGVF++CGP+ENIYL+C KMPD
Sbjct: 61 GKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Y YV ENPVFL++K KIEKDVVVR IVIGTKWLEAEREFQALVSLEGD+LGPVS
Sbjct: 121 YHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
>gi|449465372|ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449522228|ref|XP_004168129.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 175
Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 145/176 (82%), Positives = 165/176 (93%), Gaps = 1/176 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAENLDAKG MLQRSI++RLLD+FA +KATKDLGYFLAVTTLENIGE
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR+ TG+VLFPV+FSGITFK++RGE+L+G VHKVLKHGVFL+CGPVENIYL+ KMPD
Sbjct: 61 GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 119
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
YRYV ENPVFL++K KIEKDVVVR IVIGTKWLEAEREFQALVSLEGD+LGPVS
Sbjct: 120 YRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175
>gi|297737162|emb|CBI26363.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/176 (79%), Positives = 163/176 (92%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAE LDAKG MLQRSI++RLLD F+ +KAT++LGYFLAVTTLENIGE
Sbjct: 66 MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 125
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR+++G+VLFPVVFS +TFK+FRGE+LDG VHKVLKHGV L+CGPVENIYL+C KMPD
Sbjct: 126 GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 185
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
YRYV ENPVFL+EK KIEKDVVVR IV+GTKWLEAEREFQALVSLEGD+LGP+S
Sbjct: 186 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPLS 241
>gi|225432916|ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147822056|emb|CAN61549.1| hypothetical protein VITISV_043525 [Vitis vinifera]
Length = 177
Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 140/176 (79%), Positives = 163/176 (92%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAE LDAKG MLQRSI++RLLD F+ +KAT++LGYFLAVTTLENIGE
Sbjct: 1 MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR+++G+VLFPVVFS +TFK+FRGE+LDG VHKVLKHGV L+CGPVENIYL+C KMPD
Sbjct: 61 GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
YRYV ENPVFL+EK KIEKDVVVR IV+GTKWLEAEREFQALVSLEGD+LGP+S
Sbjct: 121 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPLS 176
>gi|118487294|gb|ABK95475.1| unknown [Populus trichocarpa]
Length = 176
Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 139/176 (78%), Positives = 163/176 (92%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAENLDAKG MLQRSIVV LL DFA+++ATKDLGY+LAV+TLE+IGE
Sbjct: 1 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVFSGITFKIF+GE+L+G VHKVLKHGV L+CGP+ENIYL+ KM D
Sbjct: 61 GKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
YRYV ENPVFL++K KIEKDVVVR +V+GTKWLEAEREFQALVSLEGD+LGPVS
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176
>gi|224107923|ref|XP_002314654.1| predicted protein [Populus trichocarpa]
gi|222863694|gb|EEF00825.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 139/176 (78%), Positives = 163/176 (92%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAENLDAKG MLQRSIVV LL DFA+++ATKDLGY+LAV+TLE+IGE
Sbjct: 18 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGE 77
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVFSGITFKIF+GE+L+G VHKVLKHGV L+CGP+ENIYL+ KM D
Sbjct: 78 GKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLD 137
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
YRYV ENPVFL++K KIEKDVVVR +V+GTKWLEAEREFQALVSLEGD+LGPVS
Sbjct: 138 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 193
>gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 278 bits (711), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 160/178 (89%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAEN+DAKG +L+R+I+V LLD FA +KATK+LGY++AVTTL+ IGE
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGLILKRAILVELLDAFASKKATKELGYYVAVTTLDKIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++RE+TGEVLFPV+FSG+TFKIF+GE++ G VHKVLKHGVF++CGP+EN+YL+ +KMPD
Sbjct: 61 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
Y+YV ENP+F++EK +I+ + VRV+VIG KW+EAEREFQAL SLEGD+LGP+S E
Sbjct: 121 YKYVPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEAEREFQALASLEGDYLGPLSEE 178
>gi|42566796|ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana]
gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 178
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 159/178 (89%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++PAEN+DAKG ML+R+I+V LL+ FA +KATK+LGY++AVTTL+ IGE
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++RE+TGEVLFPV+FSG+TFKIF+GE++ G VHKVLKHGVF++CGP+EN+YL+ +KMPD
Sbjct: 61 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
Y+Y+ ENP+F++EK +I+ + VRV+VIG KW+E EREFQAL SLEGD+LGP+S E
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSEE 178
>gi|388498028|gb|AFK37080.1| unknown [Medicago truncatula]
Length = 180
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/179 (69%), Positives = 154/179 (86%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++ AENL MLQR+I++RLL DFA +KATKD+GYFLAVTTL+ IGE
Sbjct: 1 MFLKVQLPWNVIIAAENLKPGSLMLQRAILIRLLSDFAAKKATKDMGYFLAVTTLDKIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVF+ +TFKIF+GEVL+G VHKVLKHGVF++ GP+EN YL+ SKMP
Sbjct: 61 GKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPG 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
Y YV ENP F+++K PKI KDV VRV+VIGTKW+EAEREFQALV LEGD+LGP+S +
Sbjct: 121 YVYVLGENPYFMNQKMPKIAKDVKVRVVVIGTKWMEAEREFQALVGLEGDYLGPISSPD 179
>gi|217074784|gb|ACJ85752.1| unknown [Medicago truncatula]
Length = 180
Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 153/179 (85%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++ AENL MLQR+I++RLL DFA +KATKD+GYFLAVTTL+ IGE
Sbjct: 1 MFLKVQLPWNVIIAAENLKPGSLMLQRAILIRLLSDFAAKKATKDMGYFLAVTTLDKIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVF+ +TFKIF+GEVL+G VHKVLKHGVF++ GP+EN YL+ SKMP
Sbjct: 61 GKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPG 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
Y YV ENP F+++K PKI KDV RV+VIGTKW+EAEREFQALV LEGD+LGP+S +
Sbjct: 121 YVYVLGENPYFMNQKMPKIAKDVKARVVVIGTKWMEAEREFQALVGLEGDYLGPISSPD 179
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 126/176 (71%), Positives = 152/176 (86%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+L WNV++ AENL +G ML R+I+VRLL DFA +KATKDLGYFLAVTTLE IGE
Sbjct: 1 MFLKVQLHWNVIIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVF+ ITFK F+GE+L+G VHKVLKHGVF++CGP+EN+YL+ KMPD
Sbjct: 61 GKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMPD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
YRYV EN F+++K KI KDV VR VIGTKW+EAEREFQALVSLEGD+LGP+S
Sbjct: 121 YRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPIS 176
>gi|388504534|gb|AFK40333.1| unknown [Lotus japonicus]
Length = 180
Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 118/177 (66%), Positives = 151/177 (85%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+L WNV++ AENL MLQR+I++RLL DFA ++ATKDLGYF AVTTL+ +GE
Sbjct: 1 MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVF+G+TFK+F+GE+L+G VHKVLKHGVFL+CGP+E++YL+ KM D
Sbjct: 61 GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSC 177
YRY EN F++EK KI KDV +R +VIGTKW+EAEREFQALVSLEGD+LGP++
Sbjct: 121 YRYFPGENAYFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIAS 177
>gi|357441001|ref|XP_003590778.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|355479826|gb|AES61029.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
Length = 173
Score = 244 bits (624), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 117/179 (65%), Positives = 142/179 (79%), Gaps = 14/179 (7%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MFLKV+LPWNV++ AENL MLQR ATKD+GYFLAVTTL+ IGE
Sbjct: 8 MFLKVQLPWNVIIAAENLKPGSLMLQR--------------ATKDMGYFLAVTTLDKIGE 53
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VR++TG+VLFPVVF+ +TFKIF+GEVL+G VHKVLKHGVF++ GP+EN YL+ SKMP
Sbjct: 54 GKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPG 113
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
Y YV ENP F+++K PKI KDV VRV+VIGTKW+EAEREFQALV LEGD+LGP+S +
Sbjct: 114 YVYVLGENPYFMNQKMPKIAKDVKVRVVVIGTKWMEAEREFQALVGLEGDYLGPISSPD 172
>gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 106/161 (65%), Positives = 142/161 (88%)
Query: 18 LDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
+DAKG ML+R+I+V LL+ FA +KATK+LGY++AVTTL+ IGEG++RE+TGEVLFPV+FS
Sbjct: 1 MDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFS 60
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP 137
G+TFKIF+GE++ G VHKVLKHGVF++CGP+EN+YL+ +KMPDY+Y+ ENP+F++EK
Sbjct: 61 GMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTS 120
Query: 138 KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
+I+ + VRV+VIG KW+E EREFQAL SLEGD+LGP+S E
Sbjct: 121 RIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSEE 161
>gi|18403570|ref|NP_566719.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 174
Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 134/174 (77%), Gaps = 1/174 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+KVKLPW+V +PAE++D G MLQR+IV+RLL+ F++ KATKDLGY + T LENIGE
Sbjct: 1 MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 59
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+++E TGE+ FPVVF+GI FK+F+GE++ G VHKV K GVFLK GP E IYL+ KMP
Sbjct: 60 GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 119
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
Y ++ ENP F+++ +I+ VR +V+ T+W EAE++F AL S++GD LGP
Sbjct: 120 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173
>gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 174
Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 132/174 (75%), Gaps = 1/174 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+KVKLPW+V +PAE++D G MLQR+IV+RLL+ F +KATKDLGY + T LENIGE
Sbjct: 1 MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFGTKKATKDLGYLITPTILENIGE 59
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+++E TGE+ FPVVF+GI FK+F+GEV+ G V KV K GVFL+ GP E IYL+ KMP
Sbjct: 60 GKIKEQTGEIQFPVVFNGICFKMFKGEVVHGVVQKVHKSGVFLRSGPYEIIYLSHVKMPG 119
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
Y ++ E P+F+++ +I+ VR IV+ T+W EAE++F AL S++GD LGP
Sbjct: 120 YEFIPGEKPIFMNQNMSRIQIGARVRFIVLDTEWREAEKDFMALASIDGDNLGP 173
>gi|357134557|ref|XP_003568883.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 175
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 132/174 (75%), Gaps = 1/174 (0%)
Query: 2 FLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEG 61
FL + WNV++ + L +KG +L++SI+VRLL+D A RKA+K+ GY++AV L+ I EG
Sbjct: 3 FLLADMSWNVLISPDQLSSKGLLLRKSILVRLLEDIANRKASKEHGYYIAVNELKEISEG 62
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
+VRE TG+VLFPV F+ IT K +GE+L G+V K+LKHGVFLK GP+EN++L+ M DY
Sbjct: 63 KVRELTGDVLFPVTFTCITLKPMKGEILVGSVEKILKHGVFLKSGPIENVFLSEKTMNDY 122
Query: 122 RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+Y+ ENP+F+ + + K+EKD V+R +G +W+EA+R+FQ L +L GDFLGP+
Sbjct: 123 KYIGGENPMFMKD-HSKLEKDTVLRFKAMGFRWMEADRQFQLLATLAGDFLGPL 175
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 131/174 (75%), Gaps = 1/174 (0%)
Query: 2 FLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEG 61
FL ++ WNV++ + L AKG +L++ I+VRLL+D RKA+K+ GY++AV L+ I EG
Sbjct: 3 FLLTEMSWNVLISPDQLSAKGLLLRKFIIVRLLEDVTNRKASKEHGYYIAVNELKEISEG 62
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
+VRE TG+VLFPV F+ IT K +GE+L G+V K+LKHG+FLK GP+ENI+L+ M DY
Sbjct: 63 KVRELTGDVLFPVTFTCITLKPMKGEILVGSVDKILKHGMFLKSGPIENIFLSEKTMNDY 122
Query: 122 RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+Y+ ENP+F+ + + K+EKD +VR V+G +W+E +R+FQ L +L GDFLGP+
Sbjct: 123 KYIGGENPMFMKD-HSKLEKDTIVRFRVMGFRWMEGDRQFQLLATLAGDFLGPL 175
>gi|326527317|dbj|BAK04600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 131/174 (75%), Gaps = 1/174 (0%)
Query: 2 FLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEG 61
FL+ ++ WNV++ + L KG +L++SI+VRLL+D RKA+ + GY++AV L+ I EG
Sbjct: 3 FLQEEMSWNVLISPDQLSPKGLLLRKSIIVRLLEDITNRKASNEHGYYIAVNELKTISEG 62
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
+VRE TG+VLFPV F+ IT + +GE+L G+V K+LKHGVFLK GP+E+I+L+ M DY
Sbjct: 63 KVRELTGDVLFPVTFTCITQRPMKGEILVGSVEKILKHGVFLKSGPIESIFLSEKSMSDY 122
Query: 122 RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+Y+ ENP+F+ + + K+E+D VR V+G +W+EAER+FQ L SL GDFLGP+
Sbjct: 123 KYMGGENPMFMKD-HSKLERDTAVRFKVMGFRWMEAERQFQLLASLAGDFLGPL 175
>gi|115462207|ref|NP_001054703.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|45267865|gb|AAS55764.1| putative RNA polymerase II [Oryza sativa Japonica Group]
gi|113578254|dbj|BAF16617.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|125550915|gb|EAY96624.1| hypothetical protein OsI_18537 [Oryza sativa Indica Group]
gi|215692867|dbj|BAG88287.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630264|gb|EEE62396.1| hypothetical protein OsJ_17187 [Oryza sativa Japonica Group]
Length = 175
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 135/175 (77%), Gaps = 1/175 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
+FLKV++ NV++ L +G +L+++++VRLL+D A RKA+KD GY++AV+ L+ I E
Sbjct: 2 VFLKVEMSLNVLISPSQLSPQGLLLRKAVIVRLLEDIANRKASKDHGYYIAVSELKAISE 61
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VRE TG+VLFPV F+ IT K +GEVL G+V K+LKHG+FLK GP+E+I+L+ M D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTMSD 121
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
++Y+ EN VF++E + K+EKD VVR V+G +W+EA+R+FQ L +L GD+LGP+
Sbjct: 122 FKYIGGENAVFMNE-HSKLEKDTVVRFKVMGFRWMEADRQFQLLATLAGDYLGPL 175
>gi|218196310|gb|EEC78737.1| hypothetical protein OsI_18944 [Oryza sativa Indica Group]
Length = 175
Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 134/175 (76%), Gaps = 1/175 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
+FLKV + WNV++ L KG +L+++++V LL++ A RKA+KD GY++AV+ L+ I E
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VRE TG+VLFPV F+ IT K +GE+L G+V K+LKHGVFLK GP+E+I+L+ + D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 121
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
Y+Y+ ENP+F+++ + K+EKD VR V+G +W+EA+R+FQ L +L GD+LGP+
Sbjct: 122 YKYIGGENPMFMND-HSKLEKDTAVRFKVMGFRWMEADRQFQILATLAGDYLGPL 175
>gi|242086985|ref|XP_002439325.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
gi|241944610|gb|EES17755.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
Length = 175
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 131/174 (75%), Gaps = 1/174 (0%)
Query: 2 FLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEG 61
FL+ ++ WNV++ LD KG +L+++I+VRLL+D R+A+K+ GY++AV+ L+ I EG
Sbjct: 3 FLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYVAVSQLKAISEG 62
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
+VRE TG+VLFPV F+ IT K +GEV+ G V ++LKHGVFLK GPVE+I+L M DY
Sbjct: 63 KVRELTGDVLFPVSFTCITLKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSDY 122
Query: 122 RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+Y+ EN +F+++ + K+EKD VR V+G +W+EA+R+FQ L ++ GDFLGP+
Sbjct: 123 KYIGGENAMFMND-HSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 175
>gi|226493930|ref|NP_001150375.1| LOC100284005 [Zea mays]
gi|194705372|gb|ACF86770.1| unknown [Zea mays]
gi|195638760|gb|ACG38848.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|195658229|gb|ACG48582.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|413944600|gb|AFW77249.1| DNA-directed RNA polymerase II polypeptide isoform 1 [Zea mays]
gi|413944601|gb|AFW77250.1| DNA-directed RNA polymerase II polypeptide isoform 2 [Zea mays]
gi|413944602|gb|AFW77251.1| DNA-directed RNA polymerase II polypeptide isoform 3 [Zea mays]
Length = 175
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 130/174 (74%), Gaps = 1/174 (0%)
Query: 2 FLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEG 61
FL+ ++ WNV++ LD KG +L+++I+VRLL+D R+A+K+ GY++AV L+ I EG
Sbjct: 3 FLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYIAVNQLKAISEG 62
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
+VRE TG+VLFPV F+ IT K +GEV+ G V ++LKHGVFLK GPVE+I+L M +Y
Sbjct: 63 KVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNY 122
Query: 122 RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+Y+ EN +F+++ + K+EKD VR V+G +W+EA+R+FQ L ++ GDFLGP+
Sbjct: 123 KYIGGENAMFMND-HSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 175
>gi|57863806|gb|AAS98454.2| putative receptor kinase [Oryza sativa Japonica Group]
Length = 715
Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 85/171 (49%), Positives = 128/171 (74%), Gaps = 1/171 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
+FLKV + WNV++ L KG +L+++++V LL++ A RKA+KD GY++AV+ L+ I E
Sbjct: 37 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 96
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VRE TG+VLFPV F+ IT K +GE+L G+V K+LKHGVFLK GP+E+I+L+ + D
Sbjct: 97 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 156
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDF 171
Y+Y+ ENP+F+++ + K+EKD VR V+G +W+EA+R+FQ L +L F
Sbjct: 157 YKYIGGENPMFMNDHS-KLEKDTAVRFKVMGFRWMEADRQFQILATLAAMF 206
>gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 116/153 (75%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G MLQR+IV+RLL+ F++ KATKDLGY + T LENIGEG+++E TGE+ FPVVF+GI F
Sbjct: 4 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 63
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K+F+GE++ G VHKV K GVFLK GP E IYL+ KMP Y ++ ENP F+++ +I+
Sbjct: 64 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQI 123
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
VR +V+ T+W EAE++F AL S++GD LGP
Sbjct: 124 GARVRFVVLDTEWREAEKDFMALASIDGDNLGP 156
>gi|222630667|gb|EEE62799.1| hypothetical protein OsJ_17602 [Oryza sativa Japonica Group]
Length = 796
Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 127/167 (76%), Gaps = 1/167 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
+FLKV + WNV++ L KG +L+++++V LL++ A RKA+KD GY++AV+ L+ I E
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VRE TG+VLFPV F+ IT K +GE+L G+V K+LKHGVFLK GP+E+I+L+ + D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 121
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSL 167
Y+Y+ ENP+F+++ + K+EKD VR V+G +W+EA+R+FQ L +L
Sbjct: 122 YKYIGGENPMFMNDHS-KLEKDTAVRFKVMGFRWMEADRQFQILATL 167
>gi|224107919|ref|XP_002314653.1| predicted protein [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 120/180 (66%), Gaps = 4/180 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +V++ V + AENLD G + QRSIV LL D KA+KD GYFLAVT L++IG+
Sbjct: 1 MFGEVEVCSTVRIIAENLDRNGLVPQRSIVTHLLKDLLSMKASKDHGYFLAVTNLKSIGK 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V +G+VLF V F TF +GE+L G VH+ +HGV L+CGPV+ I+L+ KMP+
Sbjct: 61 GEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHGVLLRCGPVKYIFLSARKMPN 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLE----AEREFQALVSLEGDFLGPVS 176
Y+Y ENPVFL+++ +IE +V+VR V+ +W+E R+F L SL GD LGP+S
Sbjct: 121 YQYTSEENPVFLNDELARIENNVLVRFSVLDVRWIEKMWDMRRDFMMLASLVGDSLGPIS 180
>gi|115462713|ref|NP_001054956.1| Os05g0224700 [Oryza sativa Japonica Group]
gi|113578507|dbj|BAF16870.1| Os05g0224700 [Oryza sativa Japonica Group]
Length = 782
Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 111/146 (76%), Gaps = 1/146 (0%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
+FLKV + WNV++ L KG +L+++++V LL++ A RKA+KD GY++AV+ L+ I E
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+VRE TG+VLFPV F+ IT K +GE+L G+V K+LKHGVFLK GP+E+I+L+ + D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 121
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVR 146
Y+Y+ ENP+F+++ + K+EKD VR
Sbjct: 122 YKYIGGENPMFMNDHS-KLEKDTAVR 146
>gi|449432628|ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449432630|ref|XP_004134102.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 190
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 112/181 (61%), Gaps = 5/181 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +V+L +V + E QR I+ LL++ + KA KD GYFL+VT+L +IG+
Sbjct: 1 MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V+ + V FP+ F TF F GE+L G V + + G+ LKCGP++ ++L+ KMP
Sbjct: 61 GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA----EREFQALVSLEG-DFLGPV 175
Y+YV ENPVF S++ I DVVVR V+G +W+E ++EF L SLEG + LGP+
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
Query: 176 S 176
S
Sbjct: 181 S 181
>gi|30682881|ref|NP_193188.2| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|30682886|ref|NP_849385.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|334186527|ref|NP_001190729.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|38603938|gb|AAR24714.1| At4g14520 [Arabidopsis thaliana]
gi|44681416|gb|AAS47648.1| At4g14520 [Arabidopsis thaliana]
gi|110741153|dbj|BAE98669.1| hypothetical protein [Arabidopsis thaliana]
gi|332658054|gb|AEE83454.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|332658055|gb|AEE83455.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|332658056|gb|AEE83456.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
Length = 200
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 19/193 (9%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +V++ +V + A++L+ + P + I+ RLL D KA ++ G++L +T L++IG
Sbjct: 1 MFSEVEMARDVAICAKHLNGQSP--HQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 58
Query: 61 GRVRE------NTGEVL-FPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYL 113
+ + ++L FPV F+ TF RG++L GTV KVL +G F++ GP+ YL
Sbjct: 59 NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 118
Query: 114 TCSKMPDYRYVQA-----ENPVFLSEKNPKIEKDVVVRVIVIGTKWLE----AEREFQAL 164
+ KMP Y YV + E P F + KI VVVR V+ ++ E ++ L
Sbjct: 119 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 178
Query: 165 VSLEGD-FLGPVS 176
+LEG+ GP+S
Sbjct: 179 ATLEGNGSFGPIS 191
>gi|297804848|ref|XP_002870308.1| hypothetical protein ARALYDRAFT_493454 [Arabidopsis lyrata subsp.
lyrata]
gi|297316144|gb|EFH46567.1| hypothetical protein ARALYDRAFT_493454 [Arabidopsis lyrata subsp.
lyrata]
Length = 194
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 19/184 (10%)
Query: 10 NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVR----- 64
+V + A +L+ + P Q I+ RLL D KA ++ G++L +T L++IG +
Sbjct: 4 DVAICANHLNGQAPHHQ--ILGRLLKDLIHEKACREHGFYLGITALKSIGNNKNNNDENK 61
Query: 65 --ENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYR 122
+ FPV F+ TF RG++L GTV KVL +G F++ GP+ YL+ KMPDY
Sbjct: 62 DNHQAHLLTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSFLKMPDYH 121
Query: 123 YVQA-----ENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA----EREFQALVSLE-GDFL 172
YV + E P F + KI VVVR V+ ++ E ++ L +LE D
Sbjct: 122 YVHSPLLEDEKPYFQKDDLSKIAVGVVVRFGVLAVRFKEKPHKRRNDYYVLATLERNDSF 181
Query: 173 GPVS 176
GP+S
Sbjct: 182 GPIS 185
>gi|2244808|emb|CAB10231.1| hypothetical protein [Arabidopsis thaliana]
gi|7268158|emb|CAB78494.1| hypothetical protein [Arabidopsis thaliana]
Length = 194
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 19/184 (10%)
Query: 10 NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRE---- 65
+V + A++L+ + P + I+ RLL D KA ++ G++L +T L++IG +
Sbjct: 4 DVAICAKHLNGQSP--HQPILCRLLQDLIHEKACREHGFYLGITALKSIGNNKNNNIDNE 61
Query: 66 --NTGEVL-FPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYR 122
+ ++L FPV F+ TF RG++L GTV KVL +G F++ GP+ YL+ KMP Y
Sbjct: 62 NNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHYH 121
Query: 123 YVQA-----ENPVFLSEKNPKIEKDVVVRVIVIGTKWLE----AEREFQALVSLEGD-FL 172
YV + E P F + KI VVVR V+ ++ E ++ L +LEG+
Sbjct: 122 YVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEGNGSF 181
Query: 173 GPVS 176
GP+S
Sbjct: 182 GPIS 185
>gi|168006688|ref|XP_001756041.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692971|gb|EDQ79326.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +V+L VVV + L + +R+++ RLL DF + +++ G+ + VTTLE++
Sbjct: 1 MFFEVELRRLVVVEPQELGDE-LHTRRAMIRRLLKDFDAERCSEEHGFHVTVTTLEDVSP 59
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++R TG V+F V F I F+ R E+L+ V VL+ G CG I++ +M
Sbjct: 60 GKIRSGTGSVIFWVTFKCIVFRPIRNEILEAEVTDVLERGFLAACG-ASRIFVPRKEMDG 118
Query: 121 YRY---VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+ + E + I+ + R+ V+GT+W ER A +L GD LG V
Sbjct: 119 FEFRPGASLEYNEWHDSSGSVIKPKSMARLKVVGTRWEPKERTIMAAGTLNGDLLGRV 176
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|50878367|gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa Japonica Group]
gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|125552268|gb|EAY97977.1| hypothetical protein OsI_19896 [Oryza sativa Indica Group]
gi|215704281|dbj|BAG93121.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196761|gb|EEC79188.1| hypothetical protein OsI_19893 [Oryza sativa Indica Group]
gi|222631528|gb|EEE63660.1| hypothetical protein OsJ_18478 [Oryza sativa Japonica Group]
Length = 177
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + GP L+ +V +L+ D + + G+ +A+T +E++G+
Sbjct: 1 MFFHIVLERNMQLHPRHF---GPHLRDKLVSKLIKDVEGTCSGRH-GFVVAITGVEDVGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +RE TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD
Sbjct: 57 GLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Q+ + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG +S
Sbjct: 116 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIS 171
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + GP L+ +V +L+ D + + G+ +A+T +E+IG+
Sbjct: 1 MFFHIVLERNMQLHPRHF---GPHLRDKLVAKLMKDVEGTCSGRH-GFVVAITGVEDIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +RE TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD
Sbjct: 57 GLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Q+ + P + S+ + KI+K+ VR+ +IGT+ ++A F + +++ DFLG +S
Sbjct: 116 DMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIS 171
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + GP L+ +V +L+ D + + G+ +A+T +E+IG+
Sbjct: 60 MFFHIVLERNMQLHPRHF---GPHLRDKLVAKLMKDVEGTCSGRH-GFVVAITGVEDIGK 115
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +RE TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD
Sbjct: 116 GLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 174
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Q+ + P + S+ + KI+K+ VR+ +IGT+ ++A F + +++ DFLG +S
Sbjct: 175 DMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIS 230
>gi|357133761|ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 177
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + GP L+ +V +L+ D + + G+ +A+T +E+IG+
Sbjct: 1 MFFHIVLERNMQLHPRHF---GPHLRDKLVAKLMKDVEGTCSGRH-GFVVAITGVEDIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +RE TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD
Sbjct: 57 GLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Q+ + P + S+ + KI+K+ VR+ +IGT+ ++A F + +++ DFLG +S
Sbjct: 116 DMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIS 171
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|194708012|gb|ACF88090.1| unknown [Zea mays]
gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 177
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 105/178 (58%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + GP L+ +V +L+ D + + G+ +A+T +E+IG+
Sbjct: 1 MFFHIVLERNMQLHPRHF---GPHLRDKLVSKLIKDVEGTCSGRH-GFVVAITGVEDIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +RE TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD
Sbjct: 57 GLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Q+ + P + S+ + KI+K+ VR+ +IGT+ ++A F + +++ DFLG +S
Sbjct: 116 DMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIS 171
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668556|gb|EDQ55161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 102/175 (58%), Gaps = 9/175 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + GP L+ ++ +L+ D + + G+ +AVT +E IG
Sbjct: 1 MFFHIYLDRNLQLHPRHF---GPHLRDKLIAKLIQDVEGTCSGRH-GFVVAVTAVETIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILESVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
Q+++ P + S+ + +I+KD VR+ ++GT+ ++A F + +++ DFLG
Sbjct: 116 DMAFQSDDVPNYKTSDGSVRIQKDSEVRLKIVGTR-VDATEIF-CIGTIKDDFLG 168
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
gi|302767440|ref|XP_002967140.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300165131|gb|EFJ31739.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300171811|gb|EFJ38411.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
Length = 177
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF ++L N+ + GP L+ +V +L+ D + + G+ +AVT ++ IG+
Sbjct: 1 MFFHIRLERNLQLHPRFF---GPQLRDKLVEKLIHDVEGTCSGRH-GFVVAVTGVDTIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +R+ TG V FP+ + + F+ F+GE+L+G V V K G F + GPV+ I+++ +PD
Sbjct: 57 GLIRDGTGYVTFPIHYQCVVFRPFKGEILEGVVTLVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
Q+ + P + S+ + +I+KD VR+ ++GT+ ++A F + +++ DFLG
Sbjct: 116 DMSFQSGDVPCYETSDSSVRIQKDSEVRLKIVGTR-VDATEIF-CIGTIKDDFLG 168
>gi|328871329|gb|EGG19700.1| RFT1 family protein [Dictyostelium fasciculatum]
Length = 662
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 78/130 (60%), Gaps = 3/130 (2%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
G+ + +T+++ + +G+V E++G V+F V + I FK F+GEV+D V KV G F + G
Sbjct: 534 GFIITITSVDFVSKGKVLESSGYVVFQVKYKAIIFKPFKGEVMDAVVTKVTNLGFFAEAG 593
Query: 107 PVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
P+ T PD ++ Q+ NP F+SE KI KD VR+ + GT+ ++A F A+
Sbjct: 594 PLTIFVSTHLIPPDMQFDAQSANPCFVSEDGSKISKDDEVRLQIKGTR-VDATEIF-AIG 651
Query: 166 SLEGDFLGPV 175
S+ D+LG +
Sbjct: 652 SIREDYLGVI 661
>gi|449466050|ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 176
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + G L+ ++V +L+ D + G+ +A+T +ENIG+
Sbjct: 1 MFFHIVLERNMQLHPRHF---GRNLRENLVSKLMKD-VEGTCSGRHGFVVAITGIENIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 121 YRYVQAEN-PVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Q+ + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 116 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
gi|222846170|gb|EEE83717.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ +IV +L+ D + G+ +A+T +ENIG+G +R+ TG V FPV + + F
Sbjct: 19 GRNLRENIVSKLMKD-VEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVF-LSEKNPKI 139
+ F+GE+L+ V V K G F + GPV+ I+++ +P D + + P + S+ + KI
Sbjct: 78 RPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQTGDMPNYTTSDGSVKI 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 137 QKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>gi|225434800|ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147841138|emb|CAN75204.1| hypothetical protein VITISV_042914 [Vitis vinifera]
gi|297745997|emb|CBI16053.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 104/178 (58%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + + G L+ ++V +L+ D + + G+ +A+T +EN+G+
Sbjct: 1 MFFHIVLERNMQLHPRHF---GRHLRDNLVAKLVKDVEGTCSGRH-GFVVAITGIENVGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +P
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 120 DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 116 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>gi|351722267|ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Glycine max]
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
gi|255626843|gb|ACU13766.1| unknown [Glycine max]
Length = 176
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 102/178 (57%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + G L+ ++V +L+ D + G+ +AVT +ENIG+
Sbjct: 1 MFFHIVLERNMQLHPRYF---GRNLRDNLVSKLMKD-VEGTCSGRHGFVVAVTGIENIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +P
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 120 DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 116 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>gi|388502464|gb|AFK39298.1| unknown [Lotus japonicus]
Length = 176
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + G L+ ++V +L+ D + + G+ +AVT +EN+G+
Sbjct: 1 MFFHIVLERNMQLHPRYF---GRNLRDNLVAKLMKDVEGTCSGRH-GFVVAVTGIENVGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +P
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 120 DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 116 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>gi|357476433|ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
gi|355509557|gb|AES90699.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|388514911|gb|AFK45517.1| unknown [Medicago truncatula]
Length = 176
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 102/178 (57%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + G L+ ++V +L+ D + G+ +AVT +ENIG+
Sbjct: 1 MFFHIVLERNMQLHPRYF---GRNLRDNLVSKLMKD-VEGTCSGRHGFVVAVTGIENIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +P
Sbjct: 57 GIIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 120 DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 116 DMEFQTGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>gi|281204945|gb|EFA79139.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1025
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 81/130 (62%), Gaps = 6/130 (4%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
G+ + +T+++ + G+V E+TG V+ PV + I FK F+GEVLD V KV G F + G
Sbjct: 788 GFIITITSVDFVSRGKVLESTGYVVLPVKYRAIIFKPFKGEVLDAVVTKVTNLGFFAEAG 847
Query: 107 PVENIYLTCSKMP-DYRY-VQAENPVFLSEK-NPKIEKDVVVRVIVIGTKWLEAEREFQA 163
P+ I+++ +P D ++ Q+ NP F+S+ + KI KD VR+ + GT+ ++A F A
Sbjct: 848 PL-TIFVSTHLIPTDMQFDAQSANPCFISDDGSSKISKDNEVRLQIKGTR-VDATEIF-A 904
Query: 164 LVSLEGDFLG 173
+ S+ D+LG
Sbjct: 905 IGSIREDYLG 914
>gi|302783046|ref|XP_002973296.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
gi|302789680|ref|XP_002976608.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300155646|gb|EFJ22277.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300159049|gb|EFJ25670.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
Length = 175
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 4/179 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ L +V+V ++D G +R I+ LL+D + +++ GY++A TTL +
Sbjct: 1 MWWEISLRRDVIVHPRHMDPSGGH-RRWIIQTLLEDMEDLQCSREHGYYVAPTTLSKVSG 59
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +RE +G V + V F + FK+ + E+++ + V + G CGP I+L S M
Sbjct: 60 GMIRE-SGGVSYKVDFKCMVFKLIKNEIVELEIENVKQSGAEASCGPYTAIFLHHSLMTG 118
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
+ Y P F + I K VR ++G +++ F+ L ++ LG ++ E
Sbjct: 119 FVYSNENGPCFKNSDGVVISKGCAVRAKILGGQFM--GDGFRCLATINDAHLGVINPEG 175
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223540340|gb|EEF41911.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 102/178 (57%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + G L+ ++V +L+ D + G+ +A+T +E++G+
Sbjct: 1 MFFHIVLERNMQLHPRYF---GRNLRENLVSKLMKD-VEGTCSGRHGFVVAITGIESVGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +P
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 120 DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 116 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>gi|291222602|ref|XP_002731309.1| PREDICTED: DNA directed RNA polymerase II polypeptide G-like
[Saccoglossus kowalevskii]
Length = 172
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR++ + G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S D
Sbjct: 57 GRIQPSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPLSCFVSRHSIPSD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP ++ I++D +R+ ++GT+ ++A F A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTQDEDVVIQQDDEIRLKIVGTR-VDASDIF-AIGSLMDDYLGLVS 172
>gi|391343700|ref|XP_003746144.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Metaseiulus occidentalis]
Length = 174
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVT +++IG+
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLMETVKQKLFTE-VEGTCTGKYGFVIAVTAIDSIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ N G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S PD
Sbjct: 57 GLIQPNRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGIFTEIGPLSCFISRHSIPPD 116
Query: 121 YRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++ + P + + ++ I+ D +R+ ++GT+ ++A F A+ +L D+LG +
Sbjct: 117 MQFDPNSTPPCYKNAEDDCIQADDDIRLKIVGTR-VDATDIF-AIGTLMDDYLGAIG 171
>gi|326426973|gb|EGD72543.1| hypothetical protein PTSG_00566 [Salpingoeca sp. ATCC 50818]
Length = 171
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF K+ L +V++P L GP L SI +L +D K GY ++V + IGE
Sbjct: 1 MFFKLTLEHDVLLPPRFL---GPQLAESIRRKLYED-VESKCIGKHGYIVSVIEIVKIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + GE LFPV + + F+ + EV+D V V K G+F + GP+ +++ +P+
Sbjct: 57 GEILVARGETLFPVTYRALVFRPVKNEVVDAIVSTVTKMGIFAEVGPL-RVFIHFQWIPN 115
Query: 121 YRYVQAENPVFLSEKN--PKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP + KI+ + +R+ ++G + + A SL GDFLG
Sbjct: 116 MVFDDTANPPCFRTDDFAEKIQPEDSIRIRILGVRVQAS--SIAATGSLAGDFLG 168
>gi|255730463|ref|XP_002550156.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132113|gb|EER31671.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 173
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAV--TTLENIGEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V ++ ++G+GR+ TG F V + +
Sbjct: 19 GPQMDQYLRDKLLSD-VEGTCTGQFGYIVCVLDSSHIDVGKGRIIPGTGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D VH V K G F GP+ +++++ +P D +Y + NP S +
Sbjct: 78 VWKPFKGEVVDAVVHTVNKMGFFADVGPL-SVFVSTHLIPSDMKYNSSANPPSYSSNDEH 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|156378584|ref|XP_001631222.1| predicted protein [Nematostella vectensis]
gi|156218258|gb|EDO39159.1| predicted protein [Nematostella vectensis]
Length = 172
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L +++ +L + + K G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLQTVKQKLFTEVEGTCSGK-YGFIIAVTTIDNIGV 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD + +V K G+F + GP+ S PD
Sbjct: 57 GHIQPGRGFVVYPVKYKAIVFRPFKGEVLDAVITQVNKLGLFTEIGPLSCFVSRHSIPPD 116
Query: 121 YRYVQAENPVFLSEKNPKI--EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP K+ + ++D +R+ V+GT+ ++A F A+ SL D+LG
Sbjct: 117 MEFDPNSNPPCYKTKDEDVVYQQDDEIRLRVVGTR-VDANDIF-AIGSLMDDYLG 169
>gi|339522289|gb|AEJ84309.1| DNA-directed RNA polymerase II subunit G [Capra hircus]
Length = 172
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++P GP L ++ +L + A T G+ +AVTT++NIG
Sbjct: 1 MFYHISLGPEILLPPRYF---GPNLLNTVKQKLFTE-AEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ + +++ +P
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPS 115
Query: 121 YR--YVQAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Y + P + + +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 116 EMGFYPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
gi|297312149|gb|EFH42573.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 96/157 (61%), Gaps = 6/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ ++V +L+ D + G+ +A+T +E+IG+G +R+ TG V FPV + + F
Sbjct: 19 GRNLRENLVSKLMKD-VEGTCSGRHGFVVAITGIESIGKGLIRDGTGFVTFPVKYQCVVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN-PVF-LSEKNPKI 139
+ F+GE+L+ V V K G F + GPV+ I+++ +PD QA + P + S+ + KI
Sbjct: 78 RPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+K+ VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 137 QKECEVRLKIIGTR-VDATEIF-CVGTIKDDFLGVIN 171
>gi|17510349|ref|NP_491093.1| Protein RPB-7 [Caenorhabditis elegans]
gi|351064549|emb|CCD72992.1| Protein RPB-7 [Caenorhabditis elegans]
Length = 197
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L V + + GP L +I ++L ++ T G+ +AVTT++ IG
Sbjct: 24 MFFHLSLDHEVCLHPKYF---GPNLNETIKMKLFNE-VEGTCTGKYGFVIAVTTIDTIGH 79
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+G+V+DG V +V K G+F GP+ PD
Sbjct: 80 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPD 139
Query: 121 YRY-VQAENPVFLSEKNPK-IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
+ +E P + + I D +RV +IGT+ ++A F A+ +L DFLG E
Sbjct: 140 MEFDPNSEKPCYKTNDEANVIRNDDEIRVKLIGTR-VDANDIF-AIGTLMDDFLGLCQAE 197
>gi|443718113|gb|ELU08859.1| hypothetical protein CAPTEDRAFT_177843 [Capitella teleta]
Length = 172
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF V L +++ + GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHVSLEHEILLHPQYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEVLD V +V K G+F + GP+ S +
Sbjct: 57 GIIQPGRGFVLYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
Y + NP K+ I+ D +R+ ++GT+ ++A F A+ +L D+LG V
Sbjct: 117 YEFDPNNNPPCYKTKDEDILIQTDNEIRLKIVGTR-VDASDIF-AIGTLMDDYLGVV 171
>gi|268565845|ref|XP_002639564.1| C. briggsae CBR-RPB-7 protein [Caenorhabditis briggsae]
Length = 197
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L V + + GP L +I +L ++ T G+ +AVTT++ IG
Sbjct: 24 MFFHLSLDHEVCLHPKYF---GPNLNETIKAKLFNE-VEGTCTGKYGFVIAVTTIDTIGH 79
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+G+V+DG V +V K G+F GP+ PD
Sbjct: 80 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPD 139
Query: 121 YRY-VQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ +E P + +++ I D +RV +IGT+ ++A F A+ +L DFLG
Sbjct: 140 MEFDPNSEKPCYKTNDEATVIRNDDEIRVKLIGTR-VDANDIF-AIGTLMDDFLG 192
>gi|260787962|ref|XP_002589020.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
gi|229274193|gb|EEN45031.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
Length = 172
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGV 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S D
Sbjct: 57 GAIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEVGPMSCFVSRHSIPSD 116
Query: 121 YRYVQAENPVFL--SEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP ++++ I++D +R+ ++GT+ ++A F A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTADEDVVIQQDDEIRIKIVGTR-IDANDIF-AIGSLMDDYLGLVS 172
>gi|290975310|ref|XP_002670386.1| predicted protein [Naegleria gruberi]
gi|284083944|gb|EFC37642.1| predicted protein [Naegleria gruberi]
Length = 161
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF V L N+ + + GP L R++ RL +D + +D GY ++VT + IG+
Sbjct: 1 MFFLVDLDKNIRLHPKFF---GPDLTRTLRARLQNDVEGQCTGRD-GYIVSVTEITKIGQ 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++ E++G FP+ + I FK F+GEV D V+KV G F GP+ N++++ +PD
Sbjct: 57 GKIGESSGYATFPINYKAIVFKPFKGEVCDAVVYKVTPVGFFASVGPL-NVFVSSHAVPD 115
Query: 121 YRYVQAEN--PVFLSEK 135
+ P F+SE+
Sbjct: 116 DMKYDGHHTPPRFISEE 132
>gi|321258118|ref|XP_003193819.1| hypothetical protein CGB_D7770C [Cryptococcus gattii WM276]
gi|317460289|gb|ADV22032.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 172
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 24 MLQRSIVVRLLDDFARRKATKDL--------GYFLAVTTLENIGEGRVRENTGEVLFPVV 75
+L S L+D+ R+K +D+ GY ++V T+ +IGEG++ +TG+ F
Sbjct: 12 LLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKIIPSTGQAKFKTR 71
Query: 76 FSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS-KMPDYRYVQAENPVFLSE 134
++ I K F+GEV+D V V K G F GP++ ++++C D ++ + +P
Sbjct: 72 YTAIVMKPFKGEVVDAKVANVNKMGFFAMVGPLQ-VFVSCHLTHSDMKFDPSVSPPCYRS 130
Query: 135 KNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
+ I+KD VR+ ++G + +EA F A+ +++ D+LG + E
Sbjct: 131 NDEIIQKDTKVRIQIVGCR-VEANDMF-AIGTIKKDYLGQIRDE 172
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
gi|585917|sp|P38421.1|RPB7_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|166854|gb|AAA32861.1| RNA polymerase II [Arabidopsis thaliana]
gi|9759239|dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase II
subunit 5) [Arabidopsis thaliana]
gi|26452908|dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|28973525|gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|332009771|gb|AED97154.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
Length = 176
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ ++V +L+ D + G+ +A+T ++ IG+G +R+ TG V FPV + + F
Sbjct: 19 GRNLKENLVSKLMKD-VEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN-PVF-LSEKNPKI 139
+ F+GE+L+ V V K G F + GPV+ I+++ +PD QA + P + S+ + KI
Sbjct: 78 RPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+K+ VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 137 QKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171
>gi|72013666|ref|XP_780458.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
gi|115911735|ref|XP_001175504.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
Length = 172
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF V L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHVSLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ + G VL+PV + I F+ F+GEV+D V +V K G+F GP+ S D
Sbjct: 57 GMIQPSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTDIGPLSCFISRHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ +P K+ I++D +R+ ++GT+ ++A F A+ +L DFLG VS
Sbjct: 117 MEFDPNSSPPCYKTKDEDIVIQQDDEIRLKIVGTR-VDASDIF-AIGTLMDDFLGLVS 172
>gi|308473109|ref|XP_003098780.1| CRE-RPB-7 protein [Caenorhabditis remanei]
gi|308268076|gb|EFP12029.1| CRE-RPB-7 protein [Caenorhabditis remanei]
Length = 174
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L V + + GP L +I ++L ++ T G+ +AVTT++ IG
Sbjct: 1 MFFHLSLDHEVCLHPKYF---GPNLNETIKMKLFNE-VEGTCTGKYGFVIAVTTIDTIGH 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+G+V+DG V +V K G+F GP+ PD
Sbjct: 57 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPD 116
Query: 121 YRY-VQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ +E P + +++ I D +RV +IGT+ ++A F A+ +L D+LG
Sbjct: 117 MEFDPNSEKPCYKTNDEATIIRNDDEIRVKLIGTR-VDANDIF-AIGTLMDDYLG 169
>gi|219879810|ref|NP_001137380.1| RNA polymerase II subunit 7 [Nasonia vitripennis]
Length = 173
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLDTVKQKLYTE-VEGNCTGKYGFVVAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLDG V +V K G+F + GP+ S D
Sbjct: 57 GIIQPGQGFVVYPVKYKAIVFRPFKGEVLDGIVTQVNKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++ NP K+ I+ D +R+ ++GT+ ++A F A+ +L D+LG V
Sbjct: 117 MQFCPNVNPPCYKSKDEDVVIQADDEIRLKIVGTR-VDATGIF-AIGTLMDDYLGLVC 172
>gi|221102923|ref|XP_002157143.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Hydra
magnipapillata]
Length = 172
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L +++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLQTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ + G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GYIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKAGLFTEVGPLSCFISRHSIPTD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ +P + + I++D +R+ ++GT+ ++A F A+ +L DFLG VS
Sbjct: 117 MEFDPNSSPPCYKTHDEEVVIQQDDEIRLKIVGTR-VDANDIF-AIGTLMDDFLGLVS 172
>gi|393248136|gb|EJD55643.1| hypothetical protein AURDEDRAFT_78882 [Auricularia delicata
TFB-10046 SS5]
Length = 170
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP +Q + +L D + GY +AV L +IG G V +G+ F + I F
Sbjct: 19 GPRMQEFLEKKLYAD-VEGTCSGQFGYIIAVIDLVDIGRGIVLPGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V VLK G F GP+ PD R+ NP + + IEK
Sbjct: 78 KPFKGEVVDGVVSSVLKMGFFADVGPLSVFVSAQLIHPDMRFDPNSNPPSFASEEQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTHVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|341885978|gb|EGT41913.1| CBN-RPB-7 protein [Caenorhabditis brenneri]
gi|341897170|gb|EGT53105.1| hypothetical protein CAEBREN_28990 [Caenorhabditis brenneri]
Length = 174
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L V + + GP L +I +L ++ T G+ +AVTT++ IG
Sbjct: 1 MFFHLSLDHEVCLHPKYF---GPNLNETIKQKLFNE-VEGTCTGKYGFVIAVTTIDTIGH 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+G+V+DG V +V K G+F GP+ PD
Sbjct: 57 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVSQVNKVGIFCDIGPLSCFISRHCIPPD 116
Query: 121 YRY-VQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ +E P + +++ I D +RV +IGT+ ++A F A+ +L D+LG
Sbjct: 117 MEFDPNSEKPCYKTNDEATVIRNDDEIRVKLIGTR-VDANDIF-AIGTLMDDYLG 169
>gi|58266678|ref|XP_570495.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226728|gb|AAW43188.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 172
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 24 MLQRSIVVRLLDDFARRKATKDL--------GYFLAVTTLENIGEGRVRENTGEVLFPVV 75
+L S L+D+ R+K +D+ GY ++V T+ +IGEG++ +TG+ F
Sbjct: 12 LLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKIIPSTGQAKFKTR 71
Query: 76 FSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS-KMPDYRYVQAENPVFLSE 134
++ I K F+GEV+D V V K G F GP++ ++++C D ++ + +P
Sbjct: 72 YTAIVMKPFKGEVVDAKVVNVNKMGFFAMVGPLQ-VFVSCHLTHSDMKFDPSVSPPCYRS 130
Query: 135 KNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
+ I+KD VR+ ++G + +EA F A+ +++ D+LG + E
Sbjct: 131 NDEIIQKDTKVRIQIVGCR-VEANDMF-AIGTIKKDYLGQIRDE 172
>gi|448519863|ref|XP_003868179.1| Rpb7 protein [Candida orthopsilosis Co 90-125]
gi|354544173|emb|CCE40896.1| hypothetical protein CPAR2_109340 [Candida parapsilosis]
gi|380352518|emb|CCG22744.1| Rpb7 protein [Candida orthopsilosis]
Length = 173
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ TG F V + +
Sbjct: 19 GPQMDQFLRDKLLSD-VEGTCTGQFGYIVCVLDSMNIDVGKGRIIPTTGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+DG V V K G F GP+ +++++ +P D ++ + NP S +
Sbjct: 78 VWKPFKGEVVDGVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYSSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSKVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|312072366|ref|XP_003139033.1| polymerase [Loa loa]
gi|307765805|gb|EFO25039.1| DNA-directed RNA polymerase II subunit RPB7 [Loa loa]
Length = 174
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L ++ T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPDLLETVKRKLFNE-VEGTCTGKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFL--SEKNPKI 139
+ F+G+V+D V++V K G+F GP+ PD + NP ++++ I
Sbjct: 78 RPFKGQVVDAVVNQVNKVGLFCDIGPLSCFVSRHCIPPDMEFEPNSNPPCYKTADESVVI 137
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++D +RV +IGT+ ++A F A+ +L D+LG
Sbjct: 138 KQDDEIRVKLIGTR-VDASDIF-AIGTLMDDYLG 169
>gi|403341587|gb|EJY70102.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
gi|403342420|gb|EJY70530.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
Length = 174
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Query: 34 LDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDG 91
++D + GY + + + ++I +GR+++ TG+V++ V F + F+ FRGEVLDG
Sbjct: 30 IEDITVGTCSGTYGYIIQIIQMKPQDISDGRIQDTTGDVIYKVKFKALVFRPFRGEVLDG 89
Query: 92 TVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDV--VVRVIV 149
V + +G ++ GP+++ T Y Y ++ N F+S+ +P + V +R +
Sbjct: 90 EVIDITDNGFMIESGPLKSFISTMRIQNQYAYDKSHNQ-FISKDDPNLRITVGSNIRYKI 148
Query: 150 IGTKWLEAEREFQALVSLEGDFLGPVS 176
K+ + E+ A+ SLE +LGP+S
Sbjct: 149 DQIKYDKG--EYTAVSSLEDGYLGPLS 173
>gi|149244114|ref|XP_001526600.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448994|gb|EDK43250.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 173
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ ++G F V + +
Sbjct: 19 GPQMDQYLRDKLLSD-VEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSSGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+DG V V K G F GP+ +++++ +P D ++ + NP S +
Sbjct: 78 VWKPFKGEVVDGVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYSSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSKVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|198430459|ref|XP_002120172.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide G
[Ciona intestinalis]
Length = 172
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 95/178 (53%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG+
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLETVKQKLFTE-VEGTCTGKHGFVIAVTTIDNIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+P+ + I F+ F+GEV+D V +V K G+F + GP+ S D
Sbjct: 57 GLIQPGRGFVLYPIKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPAD 116
Query: 121 YRYVQAENPVFL--SEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++ +P +++ I++D +R+ ++GT+ ++A F A+ SL D+LG +S
Sbjct: 117 MKFDPESHPPCYKTDDEDVVIQQDDEIRLKIVGTR-VDANDIF-AIGSLMDDYLGLIS 172
>gi|324530828|gb|ADY49116.1| DNA-directed RNA polymerase II subunit RPB7 [Ascaris suum]
Length = 174
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L + + + GP L ++ +L ++ T G+ +AVTT++NIG
Sbjct: 1 MFYHIPLEHEICLHPKYF---GPELLETVKRKLFNE-VEGTCTGKYGFVIAVTTIDNIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+G+V+D V +V K G+F GP+ PD
Sbjct: 57 GLIQPGRGFVVYPVKYKAIVFRPFKGQVVDAVVSQVNKVGIFCDIGPMSCFVSRHCIPPD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP ++ I++D +RV +IGT+ A + A+ +L D+LG
Sbjct: 117 MEFEPNANPPCYKTQDESVVIKQDDEIRVKLIGTRVDAA--DIFAIGTLMDDYLG 169
>gi|353236768|emb|CCA68756.1| probable DNA-directed RNA polymerase II chain Rpb7 [Piriformospora
indica DSM 11827]
Length = 170
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + I +L D + T G+ +AV + ++G G V G+ F + I F
Sbjct: 19 GPRMLEIIEAKLHSD-VQGTCTGQYGFIIAVLEIIDVGPGIVLPGNGQAEFKTRYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GEVLDG V VL+ G F++ GP+ PD R+ A P F S ++ IE
Sbjct: 78 KPFKGEVLDGVVTNVLRAGFFVEVGPLRCFVSQQLVHPDMRFDANAAVPSF-SSQDQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
KD VR+ V+GT+ + E A+ +++ D LG
Sbjct: 137 KDTKVRLKVVGTRV--DQTEIFAIATIKEDHLG 167
>gi|225709388|gb|ACO10540.1| DNA-directed RNA polymerase II subunit RPB7 [Caligus rogercresseyi]
Length = 172
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L + +L + T G+ +AVTT++NIG G ++ G V++PV + I F
Sbjct: 19 GPTLLDRVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGIIQPGNGFVIYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-- 138
+ F+GEVLD V +V K G+F + GP + +++ +P D + NP N +
Sbjct: 78 RPFKGEVLDAVVTQVNKVGLFTEIGP-PSCFISRHSIPADMTFDPNSNPPCYKTNNEEVT 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I +D +R+ ++GT+ ++A F A+ +L D+LG VS
Sbjct: 137 IHQDDDIRLKIVGTR-VDASDIF-AIGTLMDDYLGLVS 172
>gi|442759309|gb|JAA71813.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 171
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L+ ++ +L + T G+ +AV T++NIG
Sbjct: 1 MFYHISLDHEILLHPRYF---GPQLEETVKQKLYAE-VEGTCTGKYGFVVAVMTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV ++ I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GLIQPGRGFVVYPVRYTAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP ++ I++D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFDPNSNPPCYRTQDEDVIIQQDDEIRLKIVGTR-VDASDIF-AIGTLMDDYLG 169
>gi|307201488|gb|EFN81256.1| DNA-directed RNA polymerase II subunit RPB7 [Harpegnathos saltator]
Length = 179
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLDTVKQKLYTE-VEGTCTGKYGFVVAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ + +++ +P
Sbjct: 57 GIIQPGQGFVIYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPL-SCFISHHSIPE 115
Query: 120 DYRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
D ++ NP K I+ D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 116 DMQFCPNVNPACYKSKEEDVIIQADDEIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gi|328852061|gb|EGG01210.1| hypothetical protein MELLADRAFT_50187 [Melampsora larici-populina
98AG31]
Length = 172
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP Q + +L D T GY +AV ++ +I G ++ TG F + +S I
Sbjct: 19 GPRTQSFLEDKLNRD-VEGTCTGRFGYIIAVLSIRSISAGTIQPGTGMAEFVIKYSAIVL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPK 138
K F+GEV+DG V +V K G F++ GP++ +++ +P D R+ NP S E
Sbjct: 78 KPFKGEVVDGIVGQVNKMGFFVEVGPLQA-FVSSHLIPSDLRFDPNANPPCFSSDEDQAT 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
IEK +R+ ++GT+ ++A F A+ +++ D+LGP+
Sbjct: 137 IEKGTRIRLKIVGTR-VDATEIF-AIGTIKEDYLGPI 171
>gi|307183360|gb|EFN70218.1| DNA-directed RNA polymerase II subunit RPB7 [Camponotus floridanus]
Length = 249
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G V++PV + I F
Sbjct: 95 GPQLLDTVKQKLYTE-VEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVF 153
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-- 138
+ F+GEVLD V +V K G+F + GP+ + +++ +P D ++ NP K
Sbjct: 154 RPFKGEVLDAIVTQVNKVGMFAEIGPL-SCFISHHSIPEDMQFCPNVNPACYKSKEEDVV 212
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I+ D +R+ ++GT+ ++A F A+ +L D+LG V
Sbjct: 213 IQADDEIRLKIVGTR-VDATGIF-AIGTLMDDYLGLV 247
>gi|238879354|gb|EEQ42992.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida albicans
WO-1]
Length = 173
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ +TG+V F V + +
Sbjct: 19 GPQMDQYLREKLLSD-VEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSTGKVEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|357630895|gb|EHJ78714.1| putative mixed-lineage leukemia protein, mll [Danaus plexippus]
Length = 173
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 97/179 (54%), Gaps = 10/179 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT+++IG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLDTVKQKLYTE-VEGTCTGKYGFVIAVTTIDSIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ + +++ +P
Sbjct: 57 GLIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAQIGPL-SCFISHHSIPT 115
Query: 120 DYRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + NP K I+++ V+R+ ++GT+ ++A F A+ +L D+LG V+
Sbjct: 116 DMEFCPNVNPPCYKSKQEDNVIQEEDVIRLKIVGTR-VDATGIF-AIGTLMDDYLGLVT 172
>gi|332024088|gb|EGI64305.1| DNA-directed RNA polymerase II subunit RPB7 [Acromyrmex echinatior]
Length = 267
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G V++PV + I F
Sbjct: 105 GPQLLDTVKQKLYTE-VEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVF 163
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-- 138
+ F+GEVLD V +V K G+F + GP+ + +++ +P D ++ NP K
Sbjct: 164 RPFKGEVLDAIVTQVNKVGMFAEIGPL-SCFISHHSIPEDMQFCPNVNPACYKSKEEDVV 222
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
I+ D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 223 IQADDEIRLKIVGTR-VDATGIF-AIGTLMDDYLG 255
>gi|322791340|gb|EFZ15830.1| hypothetical protein SINV_10601 [Solenopsis invicta]
Length = 169
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G V++PV + I F
Sbjct: 15 GPQLLDTVKQKLYTE-VEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVF 73
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-- 138
+ F+GEVLD V +V K G+F + GP+ + +++ +P D ++ NP K
Sbjct: 74 RPFKGEVLDAIVTQVNKVGMFAEIGPL-SCFISHHSIPEDMQFCPNVNPACYKSKEEDVV 132
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
I+ D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 133 IQADDEIRLKIVGTR-VDATGIF-AIGTLMDDYLG 165
>gi|427786803|gb|JAA58853.1| Putative polymerase rna ii dna directed polypeptide g
[Rhipicephalus pulchellus]
Length = 171
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ + GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLDHEILLHPKYF---GPQLVETVKQKLYAE-VEGTCTGKYGFVVAVTTIDNIGG 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GLIQPGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP ++ I++D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFDPNSNPPCYRTQDEDIIIQQDDEIRLKIVGTR-VDASDIF-AIGTLMDDYLG 169
>gi|259089327|ref|NP_001158701.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|209737754|gb|ACI69746.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
gi|225705948|gb|ACO08820.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|225717052|gb|ACO14372.1| DNA-directed RNA polymerase II subunit RPB7 [Esox lucius]
gi|303664575|gb|ADM16147.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFL--SEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP ++++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|325304060|tpg|DAA34731.1| TPA_inf: DNA-directed RNA polymerase subunit E' [Amblyomma
variegatum]
gi|346469865|gb|AEO34777.1| hypothetical protein [Amblyomma maculatum]
Length = 171
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLDHEILLHPRYF---GPQLVETVKQKLYAE-VEGTCTGKYGFVVAVTTIDNIGG 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GLIQPGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP ++ I++D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFDPNSNPPCYRTQDEDIIIQQDDEIRLKIVGTR-VDASDIF-AIGTLMDDYLG 169
>gi|383865506|ref|XP_003708214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Megachile rotundata]
Length = 173
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLDTVKQKLYTE-VEGTCTGKYGFVVAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP K I+ D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFCPNVNPPCYKSKEEDVIIQPDDEIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gi|4505947|ref|NP_002687.1| DNA-directed RNA polymerase II subunit RPB7 [Homo sapiens]
gi|13385826|ref|NP_080605.1| DNA-directed RNA polymerase II subunit RPB7 [Mus musculus]
gi|16758826|ref|NP_446400.1| DNA-directed RNA polymerase II subunit RPB7 [Rattus norvegicus]
gi|62752835|ref|NP_001015633.1| DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|388452830|ref|NP_001253453.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|57099729|ref|XP_533260.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Canis lupus
familiaris]
gi|291409522|ref|XP_002721043.1| PREDICTED: DNA directed RNA polymerase II polypeptide G
[Oryctolagus cuniculus]
gi|296218536|ref|XP_002755481.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Callithrix
jacchus]
gi|301779986|ref|XP_002925403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ailuropoda melanoleuca]
gi|332836746|ref|XP_001142605.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
troglodytes]
gi|335281668|ref|XP_003353863.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Sus
scrofa]
gi|338712501|ref|XP_001495008.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Equus
caballus]
gi|354504568|ref|XP_003514346.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
gi|397516683|ref|XP_003828553.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
paniscus]
gi|402893073|ref|XP_003909728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Papio anubis]
gi|402893075|ref|XP_003909729.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Papio anubis]
gi|403255132|ref|XP_003920301.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Saimiri boliviensis boliviensis]
gi|403255134|ref|XP_003920302.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Saimiri boliviensis boliviensis]
gi|410974282|ref|XP_003993576.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Felis
catus]
gi|426368868|ref|XP_004051423.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Gorilla
gorilla gorilla]
gi|50403597|sp|P62489.1|RPB7_RAT RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|50403601|sp|P62487.1|RPB7_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G; AltName:
Full=RNA polymerase II 19 kDa subunit; Short=RPB19
gi|50403602|sp|P62488.1|RPB7_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|73917870|sp|Q5E9B8.1|RPB7_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|83754529|pdb|2C35|B Chain B, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754531|pdb|2C35|D Chain D, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754533|pdb|2C35|F Chain F, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754535|pdb|2C35|H Chain H, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|929921|gb|AAA86500.1| RNA polymerase II subunit hsRPB7 [Homo sapiens]
gi|1360132|emb|CAA96468.1| RNA polymerase II RPB7 subunit-like protein [Rattus norvegicus]
gi|1924974|gb|AAB96827.1| RNA polymerase II seventh subunit [Homo sapiens]
gi|12846312|dbj|BAB27119.1| unnamed protein product [Mus musculus]
gi|12847875|dbj|BAB27743.1| unnamed protein product [Mus musculus]
gi|12850308|dbj|BAB28670.1| unnamed protein product [Mus musculus]
gi|12856725|dbj|BAB30760.1| unnamed protein product [Mus musculus]
gi|33243991|gb|AAH55278.1| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|37514866|gb|AAH05580.3| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|38014576|gb|AAH60595.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|38051973|gb|AAH60550.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|59858369|gb|AAX09019.1| DNA directed RNA polymerase II polypeptide G [Bos taurus]
gi|85566845|gb|AAI12163.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|85567601|gb|AAI12165.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|119594498|gb|EAW74092.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Homo sapiens]
gi|148701424|gb|EDL33371.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Mus musculus]
gi|149062299|gb|EDM12722.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Rattus norvegicus]
gi|189053261|dbj|BAG35067.1| unnamed protein product [Homo sapiens]
gi|208967084|dbj|BAG73556.1| polymerase (RNA) II (DNA directed) polypeptide G [synthetic
construct]
gi|296471655|tpg|DAA13770.1| TPA: DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|380785401|gb|AFE64576.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|383414681|gb|AFH30554.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|384947774|gb|AFI37492.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|410267352|gb|JAA21642.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410294946|gb|JAA26073.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410351171|gb|JAA42189.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|1098305|prf||2115374A RNA polymerase II
Length = 172
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|66811466|ref|XP_639913.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
gi|74854071|sp|Q54P04.1|RPB7_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|60466865|gb|EAL64909.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
Length = 172
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L +I + L T G+ + +T+++ + +G+V E++G V+F V + I F
Sbjct: 19 GPNL-FTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN--PVFLSEK-NPK 138
K F+GEVLD V KV G F + GP+ +I+++ +P A++ P F+SE + K
Sbjct: 78 KPFKGEVLDAIVTKVTNLGFFAEAGPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSK 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I KD VR+ + GT+ ++A F A+ S+ D+LG +
Sbjct: 137 ISKDDEVRLQIKGTR-VDATEIF-AIGSIREDYLGVI 171
>gi|41054447|ref|NP_955963.1| DNA-directed RNA polymerase II subunit RPB7 [Danio rerio]
gi|62858849|ref|NP_001017065.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|147900153|ref|NP_001091291.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus laevis]
gi|50401534|sp|Q7ZW41.1|RPB7_DANRE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|28278826|gb|AAH45299.1| Polymerase (RNA) II (DNA directed) polypeptide G-like [Danio rerio]
gi|89266814|emb|CAJ83494.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|123959696|gb|AAI28969.1| LOC100037112 protein [Xenopus laevis]
gi|134025964|gb|AAI35153.1| hypothetical protein LOC549819 [Xenopus (Silurana) tropicalis]
gi|182890184|gb|AAI64883.1| Polr2gl protein [Danio rerio]
Length = 172
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|340711605|ref|XP_003394365.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
terrestris]
gi|350416078|ref|XP_003490834.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
impatiens]
Length = 173
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLDTVKQKLYTE-VEGTCTGKYGFVVAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP K I+ D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFCPNINPPCYKSKEEDVIIQPDDEIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gi|149641280|ref|XP_001511485.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ornithorhynchus anatinus]
gi|348514213|ref|XP_003444635.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oreochromis niloticus]
gi|395544392|ref|XP_003774094.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sarcophilus
harrisii]
gi|410913687|ref|XP_003970320.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Takifugu rubripes]
gi|229367270|gb|ACQ58615.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|229367494|gb|ACQ58727.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGGGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|328789158|ref|XP_624976.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
mellifera]
gi|380030530|ref|XP_003698899.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
florea]
Length = 173
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLDTVKQKLYTE-VEGTCTGKYGFVVAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFL--SEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP E++ I+ D +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFCPNINPPCYKTKEEDVIIQPDDEIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gi|242005679|ref|XP_002423690.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
gi|212506866|gb|EEB10952.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
Length = 3311
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVT ++NIG G + G V++PV + I F
Sbjct: 17 GPQLLETVKQKLYAE-VEGTCTGKYGFVIAVTLIDNIGAGLILPGQGFVVYPVKYRAIVF 75
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-- 138
+ F+GEVLD V +V K G+F + GP+ + +++ +P D ++ NP K+
Sbjct: 76 RPFKGEVLDAVVTQVNKVGMFAEIGPL-SCFISHHSIPADMQFCPNFNPPCYKSKDEDVV 134
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I+ D +R+ ++GT+ ++A F A+ +L D+LG V
Sbjct: 135 IQADDEIRLKIVGTR-VDASGIF-AIGTLMDDYLGLV 169
>gi|24647020|ref|NP_731983.1| Rpb7 [Drosophila melanogaster]
gi|195328827|ref|XP_002031113.1| GM25797 [Drosophila sechellia]
gi|195570746|ref|XP_002103365.1| GD20374 [Drosophila simulans]
gi|23171325|gb|AAF55145.2| Rpb7 [Drosophila melanogaster]
gi|66772833|gb|AAY55728.1| IP02321p [Drosophila melanogaster]
gi|117935442|gb|ABK57062.1| IP02323p [Drosophila melanogaster]
gi|194120056|gb|EDW42099.1| GM25797 [Drosophila sechellia]
gi|194199292|gb|EDX12868.1| GD20374 [Drosophila simulans]
gi|220951186|gb|ACL88136.1| Rpb7-PA [synthetic construct]
gi|220960522|gb|ACL92797.1| Rpb7-PA [synthetic construct]
Length = 173
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++ IG
Sbjct: 1 MFYHISLEQEILLHPRYF---GPQLLETVKQKLYSE-VEGTCTGKYGFVIAVTTIDQIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V ++ K G+F + GP+ S D
Sbjct: 57 GVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++ NP K+ I + +R+ ++GT+ ++A F A+ +L D+LG VS
Sbjct: 117 MQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLGLVS 172
>gi|344304448|gb|EGW34680.1| RNA polymerase II subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 173
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ +G F V + +
Sbjct: 19 GPQMDQYLRDKLLSD-VEGTCTGQFGYIVCVLDCMNIDVGKGRIIPGSGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+DG V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDGVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|403418884|emb|CCM05584.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLQFLESKLYSD-VEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD ++ NP + + IEK
Sbjct: 78 KPFKGEVVDGVVNNVTKMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEEQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ +R+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTKIRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|229365728|gb|ACQ57844.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKI 139
+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEVGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVI 137
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 138 QQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|134110566|ref|XP_776110.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258778|gb|EAL21463.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 169
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 15/164 (9%)
Query: 24 MLQRSIVVRLLDDFARRKATKDL--------GYFLAVTTLENIGEGRVRENTGEVLFPVV 75
+L S L+D+ R+K +D+ GY ++V T+ +IGEG++ +TG+ F
Sbjct: 12 LLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKIIPSTGQAKFKTR 71
Query: 76 FSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS-KMPDYRYVQAENPVFLSE 134
++ I K F+GEV+D KV+ G F GP++ ++++C D ++ + +P
Sbjct: 72 YTAIVMKPFKGEVVDA---KVVNMGFFAMVGPLQ-VFVSCHLTHSDMKFDPSVSPPCYRS 127
Query: 135 KNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
+ I+KD VR+ ++G + +EA F A+ +++ D+LG + E
Sbjct: 128 NDEIIQKDTKVRIQIVGCR-VEANDMF-AIGTIKKDYLGQIRDE 169
>gi|90081264|dbj|BAE90112.1| unnamed protein product [Macaca fascicularis]
Length = 221
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 68 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 126
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKI 139
+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I
Sbjct: 127 RPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 186
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 187 QQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 221
>gi|255073033|ref|XP_002500191.1| predicted protein [Micromonas sp. RCC299]
gi|226515453|gb|ACO61449.1| predicted protein [Micromonas sp. RCC299]
Length = 185
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +KL N+V+ G ++ +++ RL + T GY + VT NI E
Sbjct: 1 MFWHIKLERNIVLEPRFF---GRNMRDTLMQRLKHE-VEGSCTGKHGYIVMVTDFTNISE 56
Query: 61 GRVREN-TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
G V ++ T F V F I F+ F+G+VLD V +V K G F + GP+ N++++ +
Sbjct: 57 GMVTDDGTARAKFRVEFDAIAFRPFKGQVLDAVVTEVNKFGFFAEAGPM-NLFVSNQLIS 115
Query: 120 D---YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + + N S+K+ ++K+ VRV V+G + ++A+ F + +++ D+LG +
Sbjct: 116 DDMKFESIDNANRYVSSDKSVSVQKNGEVRVRVVGMR-IDAQEIF-CVATMKEDYLGAID 173
Query: 177 CENPLD 182
+ D
Sbjct: 174 QDAGAD 179
>gi|405952867|gb|EKC20626.1| DNA-directed RNA polymerase II subunit RPB7 [Crassostrea gigas]
Length = 191
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF V L +++ GP L + +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHVSLEHEILLHPRYF---GPNLLNIVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ + G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S +
Sbjct: 57 GTIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFVSRHSIPAN 116
Query: 121 YRYVQAENPVFL--SEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP E++ I++D +R+ ++GT+ ++A+ F A+ +L D+LG
Sbjct: 117 MEFDPNSNPPCYKNKEEDEVIQQDDEIRLKIVGTR-VDAKDIF-AIGTLMDDYLG 169
>gi|388582123|gb|EIM22429.1| hypothetical protein WALSEDRAFT_60067 [Wallemia sebi CBS 633.66]
Length = 171
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP I +L D T GY +AV ++ + G G V G F V ++ I +
Sbjct: 20 GPQTMDFINNKLYAD-VEGTCTGRYGYIIAVLSISDPGSGTVLPGVGTAEFVVKYTAIVY 78
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIE 140
K F+GEV+DG V V K G F GP++ ++++ +P D ++ + NP S ++ IE
Sbjct: 79 KPFKGEVVDGQVASVNKMGFFADVGPLQ-VFVSSHLIPQDIKFDPSSNPACFSSEDQVIE 137
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
K VR+ ++GT+ ++A F A+ +++ D+LG
Sbjct: 138 KGSKVRLKIVGTR-VDATEIF-AIGTIKEDYLG 168
>gi|327289535|ref|XP_003229480.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Anolis
carolinensis]
Length = 202
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 49 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 107
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKI 139
+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I
Sbjct: 108 RPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTIDEDVVI 167
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 168 QQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 202
>gi|405954685|gb|EKC22056.1| DNA-directed RNA polymerase II subunit RPB7, partial [Crassostrea
gigas]
Length = 167
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L + +L + T G+ +AVTT++NIG G ++ + G V++PV + I F
Sbjct: 15 GPNLLNIVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGTIQPSRGFVVYPVKYKAIVF 73
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFL--SEKNPKI 139
+ F+GEVLD V +V K G+F + GP+ S + + NP E++ I
Sbjct: 74 RPFKGEVLDAVVTQVNKVGLFTEIGPLSCFVSRHSIPANMEFDPNSNPPCYKNKEEDEVI 133
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++D +R+ ++GT+ ++A+ F A+ +L D+LG
Sbjct: 134 QQDDEIRLKIVGTR-VDAKDIF-AIGTLMDDYLG 165
>gi|321461059|gb|EFX72094.1| hypothetical protein DAPPUDRAFT_308561 [Daphnia pulex]
Length = 172
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHIALEHEILLHPRYF---GPQLMETVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+G+VLD V +V K G+F + GP+ S D
Sbjct: 57 GIIQPGQGFVVYPVKYKAIVFRPFKGQVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++ P ++ I++D +R+ ++G + ++A F A+ +L D+LG VS
Sbjct: 117 MQFDPNSTPPCYKTQDEDVVIQQDDEIRIKIVGLR-VDATDIF-AIGTLMDDYLGLVS 172
>gi|448117713|ref|XP_004203323.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|448120153|ref|XP_004203906.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384191|emb|CCE78895.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384774|emb|CCE78309.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
Length = 173
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+G + TG F V + +
Sbjct: 19 GPQMDQYLRDKLLSD-VEGTCTGQFGYIVCVLDCMNIDVGKGTIIPGTGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+DG V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDGVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYMSSDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSKVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|417408664|gb|JAA50874.1| Putative dna-directed rna polymerase ii subunit rpb7-like protein,
partial [Desmodus rotundus]
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 56 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 114
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKI 139
+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I
Sbjct: 115 RPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 174
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 175 QQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 209
>gi|452819737|gb|EME26790.1| DNA-directed RNA polymerase II subunit G [Galdieria sulphuraria]
Length = 173
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 97/175 (55%), Gaps = 10/175 (5%)
Query: 2 FLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAV-TTLENIGE 60
F +V+L NV V + +K L+ +++ L+D+ + G+ ++V L+ + +
Sbjct: 3 FFQVELTKNVRVHPRHFHSK---LKETLIQTLMDE-VEGTVSGRFGFVVSVLEVLQPLPK 58
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G +RE G ++P+ + + F+ F+GEVLD V V +HG+F + GP+ I+++ ++P
Sbjct: 59 GILREGFGFAVYPLKYKALVFRPFKGEVLDAVVTNVTRHGIFAQVGPL-TIFVSRHQIPS 117
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
E ++S EK +I++D +R+ V G K ++A F A+ ++ D+LG
Sbjct: 118 DMTHDEETASYISVVEKAERIQRDSAIRLRVNGIK-IDAS-SFTAVGTILDDYLG 170
>gi|444711067|gb|ELW52021.1| TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L [Tupaia chinensis]
Length = 820
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN--PVFLSEKNPKI 139
+ F+GEV+D V +V K G+F + GP+ + +++ +P + P + + +
Sbjct: 78 RPFKGEVVDAIVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEVRH 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++D +R+ ++GT+ + + A+ SL D+LG
Sbjct: 137 QQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLG 168
>gi|68475103|ref|XP_718437.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|68475644|ref|XP_718170.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|241948197|ref|XP_002416821.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative;
DNA-directed RNA polymerase II core complex subunit,
putative [Candida dubliniensis CD36]
gi|12655858|gb|AAK00627.1| RNA polymerase II subunit 7 [Candida albicans]
gi|46439926|gb|EAK99238.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|46440202|gb|EAK99511.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|223640159|emb|CAX44406.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative
[Candida dubliniensis CD36]
Length = 173
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ +TG F V + +
Sbjct: 19 GPQMDQYLREKLLSD-VEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|392564925|gb|EIW58102.1| hypothetical protein TRAVEDRAFT_167523 [Trametes versicolor
FP-101664 SS1]
Length = 170
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L D + + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLNFLESKLYSD-VEGTCSGEFGYIIAVVSILDIGKGMVLAGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+G+V+DG V+ V K G F GP+ PD ++ NP + + IEK
Sbjct: 78 KPFKGQVVDGVVNNVTKMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEEQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTRVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|344234578|gb|EGV66446.1| hypothetical protein CANTEDRAFT_112179 [Candida tenuis ATCC 10573]
Length = 173
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ ++G F V + +
Sbjct: 19 GPQMDQYLRDKLLSD-VEGTCTGQFGYIVCVLDCMNIDVGKGRIIPSSGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP ++
Sbjct: 78 VWKPFKGEVVDAIVTTVNKMGFFADVGPL-SVFVSTHLIPSDMQFNPSANPPAYVSQDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSKVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|340373532|ref|XP_003385295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Amphimedon queenslandica]
Length = 172
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFFHIPLEHEILLHPRYF---GPNLLETVKKKLFTE-VEGTCTGKHGFVIAVTTIDNIGL 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G L+PV + I F+ F+GEVLD V +V K G+F + GP+ S P+
Sbjct: 57 GMLQTGRGVALYPVKYKAIVFRPFKGEVLDALVIQVNKLGLFTQIGPLTCFISRHSIPPE 116
Query: 121 YRYVQAENP--VFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ P SE + I++ +RV ++GT+ ++A F A+ SL D+LG +S
Sbjct: 117 MEFDPNSTPHCYRTSESDVLIQEGNYLRVRIVGTR-VDANDIF-AVGSLMEDYLGLIS 172
>gi|328773740|gb|EGF83777.1| hypothetical protein BATDEDRAFT_29094 [Batrachochytrium
dendrobatidis JAM81]
Length = 180
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + R+ + R L + + GY ++V + ++G+G ++ NTG F +++ I F
Sbjct: 19 GPQI-RAFLTRRLYEEVEGICSGQFGYIISVVDIVDVGKGVLQSNTGFAQFEILYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY--VQAENPVFLSEKNP-- 137
K F+ +V+DG V V K G + GP++ ++++ +P Y A P ++ E
Sbjct: 78 KPFKNQVVDGLVTTVNKIGFWADVGPLQ-VFVSSHLIPGYLKFDANANPPAYVGEGQEFG 136
Query: 138 ----KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSC 177
++EK VVR+ ++GT+ ++A F A+ +++ DFLGP
Sbjct: 137 EAALRVEKGAVVRLRIVGTR-VDATEIF-AIGTIKEDFLGPAQS 178
>gi|355566390|gb|EHH22769.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
mulatta]
gi|355752017|gb|EHH56137.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
fascicularis]
Length = 169
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLG 169
>gi|332374930|gb|AEE62606.1| unknown [Dendroctonus ponderosae]
Length = 173
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 18/183 (9%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ + GP L + +L + T G+ +AVTT+++IG
Sbjct: 1 MFYHISLEHEILLHPQYF---GPQLLEKVKTKLYTE-VEGTCTGKYGFVIAVTTIDHIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G + G V++PV + I F+ F+GEVLD V +V K G+F + GP+ + +++ +P
Sbjct: 57 GLILPGQGFVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGMFAEIGPL-SCFISHHSIPA 115
Query: 120 DYRYVQAENPVFLSEKNPKIEKDVV------VRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ + NP K E+D+V +R+ ++GT+ ++A F A+ +L DFLG
Sbjct: 116 EMEFCPNVNPQCYKTK----EEDIVIHAEGEIRLKIVGTR-VDASGIF-AIGTLMDDFLG 169
Query: 174 PVS 176
+S
Sbjct: 170 LIS 172
>gi|334332599|ref|XP_001362540.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Monodelphis domestica]
Length = 201
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG
Sbjct: 117 MEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLG 169
>gi|167517525|ref|XP_001743103.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778202|gb|EDQ91817.1| predicted protein [Monosiga brevicollis MX1]
Length = 174
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K + GY LAV ++ I EGR+ N GE+LF V ++ + + +V+D V V G
Sbjct: 37 KVHRSHGYVLAVIKIDRISEGRILFNRGEILFNVTYTAVILRPVPKQVIDTMVTSVNNRG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAEN-PVFLSEKNP-KIEKDVVVRVIVIGTKWLEAE 158
+F+ GP+ +++ S +PD + N P ++S K+ IE + VRV +I + A
Sbjct: 97 IFVSIGPL-TAFVSNSWIPDMTFDSDANPPRYISAKDGITIEPNDGVRVKIIAVRI--AA 153
Query: 159 REFQALVSLEGDFLGP 174
++ SL GD+LGP
Sbjct: 154 QDIFITASLTGDYLGP 169
>gi|432878328|ref|XP_004073303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oryzias latipes]
Length = 171
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG
Sbjct: 117 MEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLG 169
>gi|355712735|gb|AES04448.1| polymerase II polypeptide G [Mustela putorius furo]
Length = 183
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 13 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 68
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 69 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 128
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG
Sbjct: 129 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLG 181
>gi|125777779|ref|XP_001359725.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|194767707|ref|XP_001965956.1| GF11824 [Drosophila ananassae]
gi|194900932|ref|XP_001980009.1| GG20814 [Drosophila erecta]
gi|195157158|ref|XP_002019463.1| GL12210 [Drosophila persimilis]
gi|195444928|ref|XP_002070093.1| GK11212 [Drosophila willistoni]
gi|195501415|ref|XP_002097786.1| GE26402 [Drosophila yakuba]
gi|198477563|ref|XP_002136553.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
gi|54639475|gb|EAL28877.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|190619799|gb|EDV35323.1| GF11824 [Drosophila ananassae]
gi|190651712|gb|EDV48967.1| GG20814 [Drosophila erecta]
gi|194116054|gb|EDW38097.1| GL12210 [Drosophila persimilis]
gi|194166178|gb|EDW81079.1| GK11212 [Drosophila willistoni]
gi|194183887|gb|EDW97498.1| GE26402 [Drosophila yakuba]
gi|198142841|gb|EDY71554.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
Length = 173
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++ IG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLETVKQKLYSE-VEGTCTGKYGFVIAVTTIDQIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V ++ K G+F + GP+ S D
Sbjct: 57 GVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP K+ I + +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gi|281352567|gb|EFB28151.1| hypothetical protein PANDA_014914 [Ailuropoda melanoleuca]
Length = 165
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 15 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 73
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKI 139
+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I
Sbjct: 74 RPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 133
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++D +R+ ++GT+ + + A+ SL D+LG
Sbjct: 134 QQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLG 165
>gi|213972531|ref|NP_001135427.1| DNA-directed RNA polymerase II subunit RPB7 [Ovis aries]
gi|212378988|gb|ACJ24821.1| DNA-directed RNA polymerase II polypeptide G [Ovis aries]
Length = 172
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKSKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|170030019|ref|XP_001842888.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
gi|167865348|gb|EDS28731.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
Length = 173
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT+++IG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLIETVKQKLYTE-VEGTCTGKYGFVIAVTTIDDIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPKIEKDVV------VRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP K+ +DVV +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 117 MQFCPNGNPPCYKSKD----EDVVIALEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gi|209733032|gb|ACI67385.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + G + S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGSMSCFISRHSIPSE 116
Query: 121 YRYVQAENP--VFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP ++++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|170592835|ref|XP_001901170.1| polymerase [Brugia malayi]
gi|158591237|gb|EDP29850.1| polymerase, putative [Brugia malayi]
Length = 171
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L + + + GP L ++ +L ++ T G+ +AVTT++NIG
Sbjct: 1 MFYHIPLDHEICLHPKYF---GPDLLETVKRKLFNE-VEGTCTGKYGFVVAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+G+V+D V++V G+F GP+ PD
Sbjct: 57 GLIQPGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQV---GLFCDIGPLSCFVSRHCIPPD 113
Query: 121 YRYVQAENPVFL--SEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ NP ++++ I++D +RV +IGT+ ++A F A+ +L D+LG
Sbjct: 114 MEFEPNSNPPCYKTADESVVIKQDDEIRVKLIGTR-VDASDIF-AIGTLMDDYLG 166
>gi|126273978|ref|XP_001387367.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
gi|126213237|gb|EAZ63344.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
Length = 173
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ +G F V + +
Sbjct: 19 GPQMDQYLRDKLLSD-VEGTCTGQFGYIVCVLDCMNIDVGKGRIIPGSGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|50426557|ref|XP_461875.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
gi|49657545|emb|CAG90338.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
Length = 173
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GRV +G F V + +
Sbjct: 19 GPQMDQYLRDKLLSD-VEGTCTGQFGYIVCVLDCMNIDVGKGRVIPGSGVAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gi|226372376|gb|ACO51813.1| DNA-directed RNA polymerase II subunit RPB7 [Rana catesbeiana]
Length = 172
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVSQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++ +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTVDEDVVIQQGDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|332249762|ref|XP_003274027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nomascus
leucogenys]
Length = 134
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
G+ +AVTT++NIG G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + G
Sbjct: 5 GFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIG 64
Query: 107 PVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQAL 164
P+ S + + NP +++ I++D +R+ ++GT+ + + A+
Sbjct: 65 PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAI 122
Query: 165 VSLEGDFLGPVS 176
SL D+LG VS
Sbjct: 123 GSLMDDYLGLVS 134
>gi|91082423|ref|XP_970313.1| PREDICTED: similar to GA16051-PA [Tribolium castaneum]
gi|270007516|gb|EFA03964.1| hypothetical protein TcasGA2_TC014109 [Tribolium castaneum]
Length = 173
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ + GP L + +L + T G+ +AVTT+++IG
Sbjct: 1 MFYHISLEHEILLHPQYF---GPQLLEKVKTKLYTE-VEGTCTGKYGFVIAVTTIDSIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G + G V++PV + I F+ F+GEVLD V +V K G+F + GP+ + +++ +P
Sbjct: 57 GLILPGQGYVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGMFAEIGPL-SCFISHHSIPA 115
Query: 120 DYRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ + NP K+ I + +R+ ++GT+ ++A F A+ +L D+LG +S
Sbjct: 116 EMEFCPNVNPQCYKTKDEDVVIHAEGEIRLKIVGTR-VDATGIF-AIGTLMDDYLGLIS 172
>gi|388856504|emb|CCF49810.1| probable DNA-directed RNA polymerase II chain Rpb7 [Ustilago
hordei]
Length = 170
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L DD T GY + V + ++G+G+V +G F + +
Sbjct: 19 GPSMVEFLNQKLRDD-VEGTCTGKYGYIIKVVGMIDVGQGKVIPGSGLAEFNSTYQAVVL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIE 140
K F+GEV+D + V K G F + GP+ NI+++ +P +YR+ NP + ++
Sbjct: 78 KPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYRFQPESNPPEFVSASDRLV 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
K VR+ ++GT+ ++A F A+ +++ D+LGP
Sbjct: 137 KGRKVRIKIVGTR-VDANEIF-AIGTMKEDYLGP 168
>gi|384247619|gb|EIE21105.1| RNA polymerase II subunit B7 [Coccomyxa subellipsoidea C-169]
Length = 176
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L+ + +L+ + + G+ + VT + ++G+G +RE +G LF V +S +
Sbjct: 19 GPRLREVLEQKLISE-VEGTCSGKYGFIICVTGMGHVGKGSIREGSGTALFKVQYSCVVL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLS-EKNPKI 139
+ F+GEVLD V V K G F GP++ ++++ +P D+ + P F+S ++ ++
Sbjct: 78 RPFKGEVLDCVVSSVNKVGFFADAGPLQ-LFVSNHLIPEDFEFNATGEPAFVSTDEAVRV 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ VR+ ++GT+ ++A F + +++ D+LG +S
Sbjct: 137 QAGAEVRLRIVGTR-MDASEIF-CVGTIKEDYLGVIS 171
>gi|312378597|gb|EFR25129.1| hypothetical protein AND_09806 [Anopheles darlingi]
Length = 983
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT+++IG G ++ G V++PV + I F
Sbjct: 829 GPQLIETVKQKLYTE-VEGTCTGKYGFVIAVTTIDDIGSGTIQPGQGFVVYPVKYKAIVF 887
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-- 138
+ F+GEVLD TV +V K G+F + GP+ + +++ +P D ++ P N +
Sbjct: 888 RPFKGEVLDATVKQVNKVGMFAEIGPL-SCFISHHSIPADMQFCPNGAPPCYRAMNGESV 946
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I + +R+ ++GT+ ++A F A+ +L D+LG V
Sbjct: 947 IAAEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLGLV 981
>gi|73586691|gb|AAI03081.1| Polymerase (RNA) II (DNA directed) polypeptide G [Bos taurus]
Length = 172
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T + +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYCFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>gi|325185644|emb|CCA20126.1| DNAdirected RNA polymerase II 19 kDa polypeptide pu [Albugo
laibachii Nc14]
Length = 179
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGI 79
GP L I +RL+++ K GY + VT + E+IG+G +++N+G V F + + I
Sbjct: 19 GPKLHDIIRLRLIEEVEGTSMGK-YGYVITVTEVRDEDIGKGVIQDNSGYVCFNIRYRAI 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP---DYRYVQAENPVFLSEKN 136
F+ F+ EVLD V V + G F GP++ ++++ MP + Y N ++
Sbjct: 78 LFRPFKNEVLDAVVSVVNQLGFFADVGPLQ-VFVSRHAMPTDLNNGYDHENNAWISDDRE 136
Query: 137 PKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
+I K VR+ ++G E A+ +++ D+LG +S EN
Sbjct: 137 VEIRKGCGVRLRIMGVSI--DVTEINAIGTIKDDYLGLISSEN 177
>gi|387018224|gb|AFJ51230.1| DNA-directed RNA polymerase II subunit RPB7-like [Crotalus
adamanteus]
Length = 172
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
Y NP +++ I+ + +R+ ++GT+ + + A+ SL D+LG
Sbjct: 117 MEYDTNSNPPCYKTVDEDIVIQPEDNIRLKIVGTRV--DKNDIFAIGSLMDDYLG 169
>gi|58394731|ref|XP_320916.2| AGAP002121-PA [Anopheles gambiae str. PEST]
gi|55233251|gb|EAA00949.2| AGAP002121-PA [Anopheles gambiae str. PEST]
Length = 173
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT+++IG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLIETVKQKLYTE-VEGTCTGKYGFVIAVTTIDDIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G ++ G V++PV + I F+ F+GEVLD TV +V K G+F + GP+ + +++ +P
Sbjct: 57 GTIQPGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAEIGPL-SCFISHHSIPA 115
Query: 120 DYRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D ++ P N + I + +R+ ++GT+ ++A F A+ +L D+LG V
Sbjct: 116 DMQFCPNGAPPCYRAINGESVIAAEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLGLVG 172
>gi|343426584|emb|CBQ70113.1| probable DNA-directed RNA polymerase II chain Rpb7 [Sporisorium
reilianum SRZ2]
Length = 170
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L DD T GY + V + ++G+GRV +G F + +
Sbjct: 19 GPSMVEFLNQKLRDD-VEGTCTGKHGYIIKVIGMVDVGQGRVIPGSGLAEFNSTYQAVVL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIE 140
K F+GEV+D + V K G F + GP+ NI+++ +P +Y++ NP + ++
Sbjct: 78 KPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYKFQPESNPPEFVSASDRLV 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
K VR+ ++GT+ ++A F A+ +++ D+LGP
Sbjct: 137 KGRKVRIKIVGTR-VDANEIF-AIGTMKEDYLGP 168
>gi|157136015|ref|XP_001656728.1| DNA-directed RNA polymerase II 19 kDa polypeptide rpb7 [Aedes
aegypti]
gi|108881096|gb|EAT45321.1| AAEL003401-PA [Aedes aegypti]
Length = 173
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT+++IG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLIETVKQKLYTE-VEGTCTGKYGFVIAVTTIDDIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V++PV + I F+ F+GEVLD V +V K G+F + GP+ S D
Sbjct: 57 GLILPGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFAQIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPKIEKDVV------VRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++ NP + ++DVV +R+ ++GT+ ++A F A+ +L DFLG
Sbjct: 117 MQFCPNGNPPCYKSQ----DEDVVIALEDKIRLKIVGTR-VDATGIF-AIGTLMDDFLG 169
>gi|402223848|gb|EJU03912.1| hypothetical protein DACRYDRAFT_49099, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 166
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G + + I +L D + + GY +AV + ++G G V G F + I F
Sbjct: 15 GARMHQHIESKLHAD-VEGTCSGEYGYIIAVLDVIDVGVGLVSVGAGHAEFTTTYRAIVF 73
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GEVLD V V K G F + GP++ PD R+ A NP F S + IE
Sbjct: 74 KPFKGEVLDSVVTSVNKMGFFAEVGPLQVFVSAHLIHPDMRFDSAAANPCFAS-SDQVIE 132
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
KD VR+ ++GT+ ++A F A+ +++ D LG +
Sbjct: 133 KDTHVRLKLVGTR-VDATEIF-AIGTIKEDHLGVI 165
>gi|195036122|ref|XP_001989520.1| GH18755 [Drosophila grimshawi]
gi|195111302|ref|XP_002000218.1| GI22645 [Drosophila mojavensis]
gi|195389416|ref|XP_002053373.1| GJ23373 [Drosophila virilis]
gi|193893716|gb|EDV92582.1| GH18755 [Drosophila grimshawi]
gi|193916812|gb|EDW15679.1| GI22645 [Drosophila mojavensis]
gi|194151459|gb|EDW66893.1| GJ23373 [Drosophila virilis]
Length = 173
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 8/177 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++ IG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLETVKQKLYSE-VEGTCTGKYGFVIAVTTIDLIGS 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G V++PV + I F+ F+GEVLD V ++ K G+F + GP+ S D
Sbjct: 57 GVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPAD 116
Query: 121 YRYVQAENPVFLSEKNPK--IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
++ NP K+ I + +R+ ++GT+ ++A F A+ +L D+LG V
Sbjct: 117 MQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLGLV 171
>gi|440898152|gb|ELR49707.1| DNA-directed RNA polymerase II subunit RPB7, partial [Bos grunniens
mutus]
Length = 163
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 15 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 73
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
+ F+GEV+D V +V K G+F + GP+ S + + NP + I
Sbjct: 74 RPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 133
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+R+ ++GT+ + + A+ SL D+LG
Sbjct: 134 HDEIRLKIVGTRV--DKNDIFAIGSLMDDYLG 163
>gi|344295631|ref|XP_003419515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Loxodonta africana]
Length = 232
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFL--GPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+L GP++
Sbjct: 117 MEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLVRGPIT 174
>gi|190346607|gb|EDK38733.2| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + +LL D T GY + V NI G+G++ +G F V + +
Sbjct: 19 GPQMDSYLRSKLLSD-VEGTCTGQFGYIVCVLDCMNIDVGKGKIIPGSGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTRM--DVNEIYAIGSIKEDYLGP 170
>gi|71022503|ref|XP_761481.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
gi|46101350|gb|EAK86583.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
Length = 170
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L DD T GY + V L ++G+G+V +G F + +
Sbjct: 19 GPSMVEFLNQKLRDD-VEGTCTGKHGYIIKVIGLVDVGQGKVIPGSGLAEFNSTYQAVVL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIE 140
K F+GEV+D + V K G F + GP+ NI+++ +P +Y++ NP + ++
Sbjct: 78 KPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYKFQPESNPPEFVSASDRLV 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
K VR+ ++GT+ ++A F A+ +++ D+LGP
Sbjct: 137 KGRKVRIKIVGTR-VDANEIF-AIGTMKEDYLGP 168
>gi|406694604|gb|EKC97928.1| hypothetical protein A1Q2_07725 [Trichosporon asahii var. asahii
CBS 8904]
Length = 171
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 24 MLQRSIVVRLLDDFARRKATKDL--------GYFLAVTTLENIGEGRVRENTGEVLFPVV 75
+L S L+D+ ++K +D+ GY ++V + +IGEG++ +TG+ F
Sbjct: 12 LLHPSYFGAQLEDYLKQKLYEDVEGTCSGKHGYIISVVNVTDIGEGKIMPSTGQARFKCS 71
Query: 76 FSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEK 135
++ I K F+GEV+DG V V K G F GP++ + D ++ +P
Sbjct: 72 YTAIVMKPFKGEVVDGKVSNVNKMGFFAHVGPLQVFVSSHLVHADMKFDPNASPPCYRSA 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+ I+ VR+ ++G + +EA F A+ +++ D+LG +
Sbjct: 132 DETIQAGSRVRMEIVGCR-IEANDIF-AIGTIKKDYLGQI 169
>gi|159467891|ref|XP_001692125.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158278852|gb|EDP04615.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 82/140 (58%), Gaps = 6/140 (4%)
Query: 42 ATKDLGYFLAVTTLENIGEGRVREN-TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
T GY +AVT +++IG GR+R++ +G F V + I + ++GEVLD V V K G
Sbjct: 38 CTGKYGYVVAVTKVDDIGRGRIRQDQSGYATFEVSYGCIVCRPYKGEVLDAVVTSVNKMG 97
Query: 101 VFLKCGPVENIYLTCSKMPD-YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAE 158
F + GP++ +++T +PD + + +++ ++S ++ +I+ VR+ ++G K+ +
Sbjct: 98 FFAQAGPLQ-LFVTQHLIPDEFEFDTSDDNSWISMDQTTRIQGGTHVRIRIVGIKYDPS- 155
Query: 159 REFQALVSLEGDFLGPVSCE 178
E + +++ D+LG + E
Sbjct: 156 -EVFCIATMKEDYLGVIGSE 174
>gi|399216595|emb|CCF73282.1| unnamed protein product [Babesia microti strain RI]
Length = 178
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP Q+ I +L + T GY + V + + GRV++ TG ++ V + I F
Sbjct: 19 GPNYQQCIE-EMLRNEVEGHCTAKFGYVVCVIRIVHCESGRVQDGTGMIIVSVKYQAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYV-QAENPVFLSEKNPKIE 140
K F+ EVLD V V K G F + GP++ S P Y Y A P F S+ I
Sbjct: 78 KPFKDEVLDAIVTDVNKLGFFAQAGPLKVFVSKSSIAPGYAYQDDASQPCF-SDGTSVIR 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+R+ + G ++ + A+ +++ D+LGPV
Sbjct: 137 SQTEIRMRLQGIRYDNS--NMFAIATIKADYLGPV 169
>gi|401408717|ref|XP_003883807.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
gi|325118224|emb|CBZ53775.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
Length = 209
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +LGY + V + ++ GRV++ TG V+ + I FK F+ EVLD + V K G
Sbjct: 37 KCLHNLGYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAERE 160
+F +CGP++ S P + Y +++ ++ D +R+ ++G ++
Sbjct: 97 LFAQCGPLKVFVSRASLPPSFVYQDDSAVGCMTDGEVELRVDSDIRLRLLGVRY--DSMN 154
Query: 161 FQALVSLEGDFLGPVSCEN 179
A+ ++ FLGP+ N
Sbjct: 155 LFAIATINESFLGPIHHSN 173
>gi|431910359|gb|ELK13432.1| DNA-directed RNA polymerase II subunit RPB7 [Pteropus alecto]
Length = 223
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKI 139
+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I
Sbjct: 78 RPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVI 137
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
++D +R+ ++GT+ + + A+ SL D+L
Sbjct: 138 KQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLA 169
>gi|146418273|ref|XP_001485102.1| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + +LL D T GY + V NI G+G++ +G F V + +
Sbjct: 19 GPQMDLYLRSKLLSD-VEGTCTGQFGYIVCVLDCMNIDVGKGKIIPGSGMAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+D V V K G F GP+ +++++ +P D ++ + NP +
Sbjct: 78 VWKPFKGEVVDAVVTTVNKMGFFADVGPL-SVFVSTHLIPSDMKFNPSANPPAYVSPDEN 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
IEK VR+ ++GT+ E A+ S++ D+LGP
Sbjct: 137 IEKGSRVRLKIVGTRM--DVNEIYAIGSIKEDYLGP 170
>gi|390596943|gb|EIN06344.1| hypothetical protein PUNSTDRAFT_73661 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 186
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + K GY ++V TL +IG G + +G+ F + I F
Sbjct: 28 GPRMLQYLESKLHADVEGTCSGK-YGYIISVVTLMDIGRGTILPGSGQAEFVARYRAIVF 86
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN-PVFLSEKNPK-- 138
K F+GEV+DG V+ V K G F + GPV PD ++ + N P F SE
Sbjct: 87 KPFKGEVVDGIVNNVNKMGFFCEVGPVTCFVSQQLIHPDMKFDPSSNTPSFASEDQACTT 146
Query: 139 ----IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
IEK VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 147 LPAVIEKGTHVRLKIVGTR-VDATEIF-AIGTIKEDHLG 183
>gi|429963922|gb|ELA45920.1| hypothetical protein VCUG_02589 [Vavraia culicis 'floridensis']
Length = 155
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 21/175 (12%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +L + + D LQ ++ LL++ + D G+ LAV +++N+GE
Sbjct: 1 MFFISELSHTIHLSPNYFDTN---LQYAVRSHLLEE-VEGACSSDHGFILAVISIQNVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
V + G VLF V ++ IT K R EV++ V +V K G+F GP+ +I+++ ++P+
Sbjct: 57 A-VLNHMGSVLFKVKYTAITLKPVRNEVIEAKVDEVNKMGLFAHIGPL-SIFVSNYQIPN 114
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I+KD +VR+ +IGTK + E A+ ++ +FLG +
Sbjct: 115 -------------NLQESIKKDTLVRLKIIGTKI--DKNEIYAVGTINEEFLGVI 154
>gi|331246804|ref|XP_003336033.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309315023|gb|EFP91614.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 172
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 6/136 (4%)
Query: 43 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVF 102
T GY +AV +I G ++ TG F + +S I K F+GEV+DG V +V K G F
Sbjct: 39 TGRFGYIIAVLRTLSISAGTIQPGTGMAEFVMKYSAIVLKPFKGEVVDGIVGQVNKMGFF 98
Query: 103 LKCGPVENIYLTCSKMP-DYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAER 159
++ GP++ +++ +P D ++ NP S E IEK +R+ ++GT+ ++A
Sbjct: 99 VEVGPLQA-FVSSHLIPSDLKFDPNANPPCFSSDEDQATIEKGTRIRLKIVGTR-VDATE 156
Query: 160 EFQALVSLEGDFLGPV 175
F A+ +++ D+LGP+
Sbjct: 157 IF-AIGTIKEDYLGPI 171
>gi|401885038|gb|EJT49169.1| hypothetical protein A1Q1_01650 [Trichosporon asahii var. asahii
CBS 2479]
Length = 171
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ + ++L +D + K GY ++V + +IGEG++ +TG+ F ++ I
Sbjct: 19 GAQLEDYLKLKLYEDVEGTCSGKH-GYIISVVNVTDIGEGKIMPSTGQARFKCSYTAIVM 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V V K G F GP++ + D ++ +P + I+
Sbjct: 78 KPFKGEVVDGKVSNVNKMGFFAHVGPLQVFVSSHLVHADMKFDPNASPPCYRSADETIQA 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
VR+ ++G + +EA F A+ +++ D+LG +
Sbjct: 138 GSRVRMEIVGCR-IEANDIF-AIGTIKKDYLGQI 169
>gi|443898054|dbj|GAC75392.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 170
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L DD T GY + V + ++G+G+V +G F + +
Sbjct: 19 GPSMVEFLNQKLRDD-VEGTCTGKYGYIIKVVGMIDVGQGKVIPGSGLAEFNSTYQAVVL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIE 140
K F+GEV+D + V K G F + GP+ NI+++ +P +Y++ NP ++
Sbjct: 78 KPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYKFQPEANPPEFVSAADRLV 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
K VR+ ++GT+ ++A F A+ +++ D+LGP
Sbjct: 137 KGRKVRIKIVGTR-VDANEIF-AIGTMKEDYLGP 168
>gi|209882951|ref|XP_002142910.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209558516|gb|EEA08561.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 176
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKA----TKDLGYFLAVTTLE 56
MF V+L N+ + L GP I DD R + GY + V +
Sbjct: 1 MFFFVELWKNISLSPNQL---GPRYDEHI-----DDILRSQVEGQWITSFGYVVCVVRIL 52
Query: 57 NIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
GR+++ TG ++ P+ + I ++ +GEV+DGTV V + G+ + CGP++ ++++ S
Sbjct: 53 LRQPGRIQDGTGLIIVPIKYQAIVYRPMKGEVIDGTVESVNELGIIVNCGPLKRVFVSQS 112
Query: 117 KMP-DYRYVQ----AENPVFLSEKNP-KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGD 170
+P + Y + +L K+ +I+++ VRV + G A+ + D
Sbjct: 113 ALPENISYSSGVDGSTARAYLDSKSQLQIKQNTEVRVRLRGVN----HETLSAVAEMNSD 168
Query: 171 FLGPV 175
+LGPV
Sbjct: 169 YLGPV 173
>gi|358054534|dbj|GAA99460.1| hypothetical protein E5Q_06159 [Mixia osmundae IAM 14324]
Length = 207
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 75/122 (61%), Gaps = 6/122 (4%)
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+G ++ TG F V + + F+ F+GEVLDG V V K G F++ G + ++++ MP
Sbjct: 61 QGTIQPGTGMAEFEVPYLAVVFRPFKGEVLDGVVTTVNKMGFFVEVGAL-TVFVSAHLMP 119
Query: 120 -DYRYVQAENPVF--LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D ++ + P F + + + I+KDVVVRV ++GT+ ++A F A+ +++ D+LGP++
Sbjct: 120 GDMKFSEDSPPRFSRMGDDSMAIQKDVVVRVKIVGTR-IDATEIF-AIGTIKEDYLGPLA 177
Query: 177 CE 178
+
Sbjct: 178 AD 179
>gi|297688430|ref|XP_002821689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB7 [Pongo abelii]
Length = 229
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGE-VLFPVVFSGIT 80
GP L ++ +L + T G+ +AVTT++NIG G + G VL+PV + I
Sbjct: 75 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGGSSQGRGLLVLYPVKYKAIV 133
Query: 81 FKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPK 138
F+ F+GEV+D V +V K G+F + GP+ S + + NP +++
Sbjct: 134 FRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIV 193
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 194 IQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 229
>gi|237832997|ref|XP_002365796.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
gi|211963460|gb|EEA98655.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
Length = 207
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +LGY + V + ++ GRV++ TG V+ + I FK F+ EVLD + V K G
Sbjct: 37 KCLHNLGYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAERE 160
+F +CGP++ S P + Y +++ ++ D +R+ ++G ++
Sbjct: 97 LFAQCGPLKVFVSRASLPPSFVYQDDSAVGCMTDGEVELRVDSDIRLRLLGVRY--DSMN 154
Query: 161 FQALVSLEGDFLGPVSCEN 179
A+ ++ +LGP+ N
Sbjct: 155 LFAIATINESYLGPIHHSN 173
>gi|221488256|gb|EEE26470.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221508765|gb|EEE34334.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 207
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +LGY + V + ++ GRV++ TG V+ + I FK F+ EVLD + V K G
Sbjct: 37 KCLHNLGYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAERE 160
+F +CGP++ S P + Y +++ ++ D +R+ ++G ++
Sbjct: 97 LFAQCGPLKVFVSRASLPPSFVYQDDSAVGCMTDGEVELRVDSDIRLRLLGVRY--DSMN 154
Query: 161 FQALVSLEGDFLGPVSCEN 179
A+ ++ +LGP+ N
Sbjct: 155 LFAIATINESYLGPIHHSN 173
>gi|126644185|ref|XP_001388228.1| DNA-directed RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117301|gb|EAZ51401.1| DNA-directed RNA polymerase II, putative [Cryptosporidium parvum
Iowa II]
Length = 178
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 22/185 (11%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKD----LGYFLAVTTLE 56
MF V+L N+ V L GP I DD R + GY + V +
Sbjct: 1 MFFFVELWRNISVKPSQL---GPRYNEHI-----DDILRSQVEGQRAPPYGYVVCVIKII 52
Query: 57 NIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
GRV+++TG ++ PV + I ++ +GEV+DG V V + GV + CGP++ ++++ S
Sbjct: 53 LKQPGRVQDSTGLIIVPVKYQAIVYRPIKGEVVDGVVESVNELGVIVDCGPLKRVFVSQS 112
Query: 117 KMPDYRYVQA-----ENPVFLSEKNP-KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGD 170
+P+ ++ + +++ K +I+++ VR+ + G A+ + D
Sbjct: 113 ALPENMVYKSGIDGQSSRIYIDTKTQIQIKQNSQVRLRLRGVN----NETLSAVAEMNSD 168
Query: 171 FLGPV 175
FLGP+
Sbjct: 169 FLGPI 173
>gi|302687740|ref|XP_003033550.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
gi|300107244|gb|EFI98647.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
Length = 167
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPQMTSFLEAKLYAD-VEGTCSGRFGYIIAVVSILDIGKGMVMSGSGQAEFITRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ + G F GP+ PD ++ NP + ++ IEK
Sbjct: 78 KPFKGEVVDGVVNNM---GFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEDAIIEK 134
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 135 NTKVRLKIVGTR-VDATEIF-AIGTIKEDHLG 164
>gi|149062301|gb|EDM12724.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Rattus norvegicus]
Length = 159
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTK 153
+ NP +++ I++D +R+ ++GT+
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR 151
>gi|148701426|gb|EDL33373.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Mus musculus]
Length = 159
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTK 153
+ NP +++ I++D +R+ ++GT+
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR 151
>gi|226468572|emb|CAX69963.1| polymerase (RNA) II (DNA directed) polypeptide G [Schistosoma
japonicum]
Length = 175
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +KL +++ + GP L ++ +L D + K G+ +AVT +E+IG
Sbjct: 1 MFYHIKLEHEILLHPK---YSGPNLTETVKTKLFSDVEGTCSGK-YGFIIAVTNIEHIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
G ++ N G V + +V+ I ++ F+GEV+D V +V K GVF + GP+ I+++ +P
Sbjct: 57 GIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPL-TIFISKYSVP 114
>gi|56757637|gb|AAW26970.1| SJCHGC02592 protein [Schistosoma japonicum]
Length = 175
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +KL +++ + GP L ++ +L D + K G+ +AVT +E+IG
Sbjct: 1 MFYHIKLEHEILLHPKYF---GPNLTETVKTKLFSDVEGTCSGK-YGFIIAVTNIEHIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
G ++ N G V + +V+ I ++ F+GEV+D V +V K GVF + GP+ I+++ +P
Sbjct: 57 GIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPL-TIFISKYSVP 114
>gi|56757344|gb|AAW26843.1| unknown [Schistosoma japonicum]
Length = 157
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +KL +++ + GP L ++ +L D + G+ +AVT +E+IG
Sbjct: 1 MFYHIKLEHEILLHPKYF---GPNLTETVKTKLFSD-VEGTCSGKYGFIIAVTNIEHIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ N G V + +V+ I ++ F+GEV+D V +V K GVF + GP+ I+++ +P
Sbjct: 57 GIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPL-TIFISKYSVPS 115
>gi|110590860|pdb|2B8K|G Chain G, 12-Subunit Rna Polymerase Ii
Length = 215
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGI 79
GP +++ + +LL++ T GY L V +NI GR+ G F V + +
Sbjct: 19 GPRMKQYLKTKLLEE-VEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
FK F+GEV+DGTV +HG ++ GP++ +++T MP D + NP
Sbjct: 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQDLTFNAGSNPPSYQSSEDV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
I +RV + G + A+ S++ D+LG +S E
Sbjct: 137 ITIKSRIRVKIEGC--ISQVSSIHAIGSIKEDYLGAISHE 174
>gi|301099953|ref|XP_002899067.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262104379|gb|EEY62431.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 177
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGI 79
GP L I +RL+++ K GY + VT + E+IG+G +++N+G V F + + I
Sbjct: 19 GPKLHDIIRLRLIEEVEGTSMGK-YGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAI 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP---DYRYVQAENPVFLSEKN 136
F+ F+ +VLD V V + G F GP++ ++++ MP + Y N ++
Sbjct: 78 LFRPFKNQVLDAVVTVVNQLGFFADVGPLQ-VFVSRHAMPTDLNNGYDHESNAWISDDRE 136
Query: 137 PKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
+I K VR+ ++G E A+ +++ D+LG +S +N
Sbjct: 137 VEIRKGCGVRLKIMGVSV--DVTEINAIGTIKDDYLGLISSDN 177
>gi|313230246|emb|CBY07950.1| unnamed protein product [Oikopleura dioica]
Length = 172
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
T + G+ + VT + +IG+G + G LFP+ ++ I F+ F+GEV+DG V +V K G
Sbjct: 37 SCTGEHGFVIGVTNIHSIGDGDILAGRGFCLFPIKYAAIVFRPFKGEVVDGVVTQVNKVG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEK--NPKIEKDVVVRVIVIGTKWLEAE 158
+ + GP+ S D + NP K + I++D +R+ ++GT+
Sbjct: 97 LMVDVGPMACFISKHSIPSDMEFDPDSNPPCYKTKDEDTAIKQDDEIRLKIVGTRV--DV 154
Query: 159 REFQALVSLEGDFLGPVS 176
E ++ SL D+LG V
Sbjct: 155 NEIFSIGSLMDDYLGRVD 172
>gi|413944603|gb|AFW77252.1| hypothetical protein ZEAMMB73_465202 [Zea mays]
Length = 82
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 46/62 (74%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
+FL+ ++ WNV++ LD KG +L+++I+VRLL+D R+A+K+ GY++AV L+ I E
Sbjct: 2 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYIAVNQLKAISE 61
Query: 61 GR 62
G+
Sbjct: 62 GK 63
>gi|164657466|ref|XP_001729859.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
gi|159103753|gb|EDP42645.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
Length = 186
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
GY + V ++ ++G+G+V TG F + I K F GEV+D + V K G F + G
Sbjct: 59 GYIIKVVSVLDVGQGKVMPGTGLAEFRSRYQAIVLKPFNGEVVDAKITNVNKMGFFAEVG 118
Query: 107 PVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
P+ +I+++ +P DY++ NP + + K VRV ++GT+ ++A F A+
Sbjct: 119 PL-SIFVSSHLLPIDYKFHPDSNPPEFTSPTDSLVKGRRVRVRIVGTR-VDANEIF-AIG 175
Query: 166 SLEGDFLGP 174
+++ D+LGP
Sbjct: 176 TMKEDYLGP 184
>gi|196007472|ref|XP_002113602.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
gi|190584006|gb|EDV24076.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
Length = 172
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF V L + + GP L ++ +L + + K G+ +AVT ++ +G
Sbjct: 1 MFFHVTLEHEITLHPRYF---GPNLLDTVRRKLFSEVEGTCSGKH-GFVIAVTIIDKVGV 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++ N+G V++PV + I FK F GEV+DG V ++ K G+F++ GP+ +++ +P
Sbjct: 57 GKILPNSGFVVYPVRYKAIVFKPFPGEVVDGIVTQLNKVGLFVEVGPL-TCFISKYSIPR 115
Query: 121 YRYVQAEN--PVFLSEKNPKI-EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ P F +E I + VR+ ++GT+ ++ A+ SL+ D+LG ++
Sbjct: 116 DMFFDPNGNPPCFRTEDEDMIVQTGDEVRLKIVGTRV--DVKDIFAVGSLDQDYLGKIN 172
>gi|116207108|ref|XP_001229363.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183444|gb|EAQ90912.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 202
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +A+ ++ EGR+ +G F V + + ++ F+GEV+D V HG F + GP
Sbjct: 43 YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGP 102
Query: 108 VENIYLTCSKMPD-YRYVQAENPV-FLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
+ ++++ MPD +Y + P F + + IE+ VRV +IG + E A+
Sbjct: 103 LR-LFVSSHLMPDEIQYDASATPAQFTNNADIVIEQGTHVRVKIIGLR--TEVGEMWAIG 159
Query: 166 SLEGDFLGPV 175
S+ GDFLG V
Sbjct: 160 SINGDFLGYV 169
>gi|440491704|gb|ELQ74318.1| DNA-directed RNA polymerase subunit E' [Trachipleistophora hominis]
Length = 155
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 21/175 (12%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +L + + D LQ ++ LL++ + D G+ LAV +++N+GE
Sbjct: 1 MFFISELSHTIHLSPNYFDTN---LQYAVRSHLLEE-VEGACSSDHGFILAVLSIQNVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
V + G VLF V ++ IT K R EV++ V +V G+F GP+ +I+++ ++P
Sbjct: 57 A-VLNHMGSVLFKVKYTAITLKPVRNEVIEVKVDEVNTMGLFAHIGPL-SIFVSNYQIP- 113
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
S I+KD +VR+ +IGTK + E A+ ++ +FLG +
Sbjct: 114 ------------SNLQESIKKDTLVRLKIIGTKI--DKNEIYAVGTINEEFLGVI 154
>gi|162312460|ref|XP_001713072.1| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe 972h-]
gi|3334317|sp|O14459.1|RPB7_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|256599721|pdb|3H0G|G Chain G, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599733|pdb|3H0G|S Chain S, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529241|dbj|BAA22802.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2529245|dbj|BAA22804.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2708528|gb|AAB92516.1| Rpb7 [Schizosaccharomyces pombe]
gi|4091821|gb|AAC99317.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|159883968|emb|CAA20136.2| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe]
Length = 172
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAV--TTLENIGEGRVRENTGEVLFPVVFSGI 79
GP +Q + +LL D + GY + V + +I +GRV G F V + +
Sbjct: 20 GPRMQDYLKAKLLAD-VEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAV 78
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM-PDYRYVQAENPVFLSEKNPK 138
++ FRGEV+D V V K G F GP+ N++++ + PD ++ NP S ++
Sbjct: 79 LWRPFRGEVVDAIVTTVNKMGFFANIGPL-NVFVSSHLVPPDMKFDPTANPPNYSGEDQV 137
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
IEK VR+ ++GT+ E A+ +++ D+LG
Sbjct: 138 IEKGSNVRLKIVGTR--TDATEIFAIATMKEDYLG 170
>gi|448319540|ref|ZP_21509036.1| DNA-directed RNA polymerase subunit E' [Natronococcus amylolyticus
DSM 10524]
gi|445607533|gb|ELY61413.1| DNA-directed RNA polymerase subunit E' [Natronococcus amylolyticus
DSM 10524]
Length = 189
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +VKL V VP + L P L V +LL D + + +G ++VT + +IGE
Sbjct: 1 MYKRVKLKDTVEVPPKALGDVSPKL----VKQLLQDKLEGRMDEQVGSVVSVTQVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGT+ +V++ G F+ GPV+ + +
Sbjct: 57 GAVLPNKPGVYYEAEFDAVTFDPDMQEVVDGTIVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAFDGENQQLASNESNRTLGVDDAVRARIV 147
>gi|367020616|ref|XP_003659593.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
gi|347006860|gb|AEO54348.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
Length = 171
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +A+ ++ EGR+ +G F V + + ++ F+GEV+D V HG F + GP
Sbjct: 43 YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGP 102
Query: 108 VENIYLTCSKMPD-YRYVQAENPV-FLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
+ ++++ MPD +Y + P F + + IE+ VRV +IG + E A+
Sbjct: 103 LR-LFVSSHLMPDEIQYDASATPAQFTNNADIVIEQGTHVRVRIIGLR--TEVGEMWAIG 159
Query: 166 SLEGDFLG 173
S+ GDFLG
Sbjct: 160 SINGDFLG 167
>gi|392575439|gb|EIW68572.1| hypothetical protein TREMEDRAFT_71846 [Tremella mesenterica DSM
1558]
Length = 172
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 24 MLQRSIVVRLLDDFARRKATKDL--------GYFLAVTTLENIGEGRVRENTGEVLFPVV 75
+L S L+++ R+K +D+ GY ++V T+ +IGEG+V TG+ F
Sbjct: 12 LLHPSYFGSQLEEYLRQKLYEDVEGTCSGKYGYIISVITITSIGEGKVLPGTGQARFKTT 71
Query: 76 FSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEK 135
++ I K F+GEV+DG V V K G F GP++ + D ++ +P
Sbjct: 72 YTAIVMKPFKGEVVDGQVVNVNKMGFFAMVGPLQVFVSSHLVHADMKFDPNASPPCYRSA 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+ I+KD VR+ ++G + +EA F A+ +++ DFLG +
Sbjct: 132 DEVIQKDSKVRMQIVGCR-IEANDIF-AIGTIKKDFLGQI 169
>gi|448315453|ref|ZP_21505101.1| DNA-directed RNA polymerase subunit E' [Natronococcus jeotgali DSM
18795]
gi|445611626|gb|ELY65373.1| DNA-directed RNA polymerase subunit E' [Natronococcus jeotgali DSM
18795]
Length = 189
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP + L P L V +LL D + +++G +++T + +IGE
Sbjct: 1 MYKRVRLTDTVEVPPKALGDVSPKL----VKQLLQDKLEGRMDEEVGSVVSITEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGT+ +V++ G F+ GPV+ + +
Sbjct: 57 GAVLPNQPGVYYEAEFDAVTFDPDMQEVVDGTIVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAFDGENQQLASNESNRTLGVDDAVRARIV 147
>gi|367042626|ref|XP_003651693.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
gi|346998955|gb|AEO65357.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +A+ ++ EGR+ +G F V + + ++ F+GEV+D V HG F + GP
Sbjct: 43 YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGP 102
Query: 108 VENIYLTCSKMPD-YRYVQAENPV-FLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
+ ++++ MPD +Y + P F + + IE VRV +IG + E A+
Sbjct: 103 LR-LFVSSQLMPDEIQYDASATPAQFTNNADIVIEHGTHVRVKIIGLR--TEVGEMWAIG 159
Query: 166 SLEGDFLG 173
S+ GDFLG
Sbjct: 160 SINGDFLG 167
>gi|254574492|ref|XP_002494355.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|238034154|emb|CAY72176.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|328353828|emb|CCA40225.1| DNA-directed RNA polymerase II subunit G [Komagataella pastoris CBS
7435]
Length = 171
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGI 79
GP + + + +LL D T GY + V NI G+GR+ +G F V + +
Sbjct: 19 GPQMNQYLREKLLTD-VEGTCTGQFGYIVTVLDGMNIDVGKGRIIPGSGSAEFEVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN--PVFLSEKNP 137
+K F+GEV+D V V G F GP+ N++++ +PD N P ++S +
Sbjct: 78 VWKPFKGEVVDAIVSNVSPIGFFADVGPL-NVFVSTRLIPDNLVYNPSNSPPAYMS-NDE 135
Query: 138 KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I K VR+ V+GT+ E A+ S++ DFLG +
Sbjct: 136 LITKGSKVRLKVVGTR--TDVNEIYAIGSIKEDFLGAI 171
>gi|449015716|dbj|BAM79118.1| RNA polymerase II subunit G [Cyanidioschyzon merolae strain 10D]
Length = 174
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 2 FLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLEN-IGE 60
F ++L +V V + AK P ++ RLL + GY LAV +E +
Sbjct: 3 FFILELTKSVTVHPRHFHAKLP---DHVINRLLT-LTEGTTSGLYGYLLAVVEVERPLPP 58
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
GR+ TG +F + + + ++ F GEVLDG + V +HGVF+ GP+ +++++ +P
Sbjct: 59 GRILPGTGHAIFRLRYKALVYRPFLGEVLDGVIASVTRHGVFVAVGPL-SVFVSARNVPS 117
Query: 120 DYRYVQAEN--PVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
D + +E + ++E +VR+ ++G + E A+ +L D+LG
Sbjct: 118 DMEFDDSEQCFASVVQGSEDRLEVGTMVRLRIVGMR--RDATEIAAVGTLRADYLG 171
>gi|260944176|ref|XP_002616386.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
gi|238850035|gb|EEQ39499.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
Length = 141
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 39 RRKATKDLGYFLAVTTLENI--GEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKV 96
+ T GY + V NI G GR+ +G F V + + +K F+GEV+D V V
Sbjct: 3 KGTCTGQFGYIVCVLDCMNIDVGRGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTV 62
Query: 97 LKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLE 156
K G F GP+ T D ++ + NP + IEK VR+ ++GT+
Sbjct: 63 NKMGFFADVGPLSVFVSTHLISSDMKFNPSANPPAYVSPDETIEKGSRVRLKIVGTR--T 120
Query: 157 AEREFQALVSLEGDFLGP 174
E A+ S++ D+LGP
Sbjct: 121 DVNEIYAIGSIKEDYLGP 138
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ ++V +L+ D + G+ +A+T +ENIG+G +R+ TG V FP+ + + F
Sbjct: 15 GRNLRENLVSKLMKD-VEGTCSGQHGFVVAITGIENIGKGMIRDGTGFVSFPMKYQCVVF 73
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+ F+GE+L+ V V K G F + GPV+ I+++ +P
Sbjct: 74 RPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIP 110
>gi|171684353|ref|XP_001907118.1| hypothetical protein [Podospora anserina S mat+]
gi|170942137|emb|CAP67789.1| unnamed protein product [Podospora anserina S mat+]
Length = 249
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +A+ ++ EGR+ +G F V + + ++ F+GEV+D V +HG F GP
Sbjct: 43 YIIAIMDTFDLSEGRILPGSGMAEFTVGYRAVVWRPFKGEVVDAICTSVNQHGFFSNAGP 102
Query: 108 VENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVS 166
+ T S PD +Y A P F + + IE VR+ ++G + E A+
Sbjct: 103 LSIFVSTHSIPPDIQYDANATPPQFTNHSDIVIEPGTHVRIKIMGLR--TGVGEMFAIGK 160
Query: 167 LEGDFLG 173
++GD+LG
Sbjct: 161 IDGDYLG 167
>gi|430814255|emb|CCJ28493.1| unnamed protein product [Pneumocystis jirovecii]
Length = 150
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Query: 31 VRLLDDFARRKATKDLGYFLAV--TTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
+LL D + + GY + V + +IG+GR+ GE F V + + ++ FRGEV
Sbjct: 7 AKLLSD-VEGTCSGNYGYIICVLDSNKIDIGKGRIVPGKGEAEFEVGYKAVVWRPFRGEV 65
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKDVVVRV 147
LD V V K G F GP +I+++ +P D ++ NP + ++ +EK VR+
Sbjct: 66 LDAIVSTVNKMGFFADVGPF-SIFVSSHLIPSDLKFDPTSNPPSYASEDQLVEKGAKVRL 124
Query: 148 IVIGTKWLEAEREFQALVSLEGDFLG 173
++GT+ E A+ +++ D+LG
Sbjct: 125 KIVGTR--NDATEIFAIGTIKEDYLG 148
>gi|401827167|ref|XP_003887676.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
gi|392998682|gb|AFM98695.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
Length = 155
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 18/155 (11%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP +Q I LL ++ GY + V +++ I E R+ TGE +F V + +T
Sbjct: 19 GPNIQTLIEEYLLTKVEGSCSSS--GYVVMVLSIDEISESRIIL-TGETIFTVKYKALTL 75
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GE++D V + K GVF GP+ ++++ ++P+ FL E +I K
Sbjct: 76 KPFKGEIIDANVVETNKMGVFASVGPL-TVFISNHQIPN----------FLLEN--EITK 122
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
DV++R+ +IGTK + A+ +L D LG +S
Sbjct: 123 DVMIRLKIIGTKI--DSTKIYAVGTLNDDSLGIIS 155
>gi|435847673|ref|YP_007309923.1| DNA-directed RNA polymerase subunit E' [Natronococcus occultus SP4]
gi|433673941|gb|AGB38133.1| DNA-directed RNA polymerase subunit E' [Natronococcus occultus SP4]
Length = 189
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L + VP + L P L V +LL D + +++G +++T + +IGE
Sbjct: 1 MYKRVRLTDTIEVPPKALGDVSPKL----VKQLLQDKLEGRMDEEVGSVVSITEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGT+ +V++ G F+ GPV+ + +
Sbjct: 57 GAVLPNKPGVYYEAEFDAVTFDPDMQEVVDGTIVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAFDGENQQLASNESNRTLGVDDAVRARIV 147
>gi|50287313|ref|XP_446086.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525393|emb|CAG59010.1| unnamed protein product [Candida glabrata]
gi|114049595|emb|CAL07955.1| hypothetical protein [Candida glabrata]
Length = 171
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L NV + GP +++ I +LL + T GY L V +NI
Sbjct: 1 MFFIKDLSLNVTLHPSFF---GPRMKQYIKTKLLQE-VEGSCTGKFGYILCVLDYDNIEI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 ERGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLTFNAGSNPPSYQSSEDIITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|398366567|ref|NP_010692.3| Rpb7p [Saccharomyces cerevisiae S288c]
gi|464672|sp|P34087.1|RPB7_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName: Full=B16
gi|30749743|pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
gi|34810559|pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
gi|58177170|pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679450|pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
gi|61679467|pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679508|pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-tfiis Complex
gi|61679521|pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|61679566|pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679568|pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|83754249|pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|134104680|pdb|2JA5|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104695|pdb|2JA6|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104716|pdb|2JA7|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104728|pdb|2JA7|S Chain S, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104740|pdb|2JA8|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877779|pdb|2R7Z|G Chain G, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172233|pdb|2R92|G Chain G, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172246|pdb|2R93|G Chain G, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613468|pdb|2VUM|G Chain G, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983596|pdb|3FKI|G Chain G, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104517|pdb|3H3V|H Chain H, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839447|pdb|3HOU|G Chain G, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839462|pdb|3HOU|S Chain S, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839477|pdb|3HOV|G Chain G, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839492|pdb|3HOW|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839507|pdb|3HOX|G Chain G, Complete Rna Polymerase Ii Elongation Complex V
gi|254839522|pdb|3HOY|G Chain G, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839537|pdb|3HOZ|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471952|pdb|3I4M|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471967|pdb|3I4N|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618771|pdb|3K1F|G Chain G, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053969|pdb|3PO2|G Chain G, Arrested Rna Polymerase Ii Elongation Complex
gi|325053984|pdb|3PO3|G Chain G, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634544|pdb|3QT1|G Chain G, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|353251639|pdb|3J0K|G Chain G, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380842|pdb|4A3C|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546296|pdb|4A3B|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546314|pdb|4A3D|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546331|pdb|4A3E|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546348|pdb|4A3F|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546365|pdb|4A3J|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546382|pdb|4A3K|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546398|pdb|4A3L|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546415|pdb|4A3M|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977885|pdb|4A3G|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977900|pdb|4A3I|G Chain G, Rna Polymerase Ii Binary Complex With Dna
gi|380764985|pdb|4A93|G Chain G, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145452|pdb|4BBR|G Chain G, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145465|pdb|4BBS|G Chain G, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|300239|gb|AAC60558.1| RNA polymerase II subunit RPB7 [Saccharomyces cerevisiae]
gi|927335|gb|AAB64844.1| Rpb7p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|151942377|gb|EDN60733.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190404660|gb|EDV07927.1| RNA polymerase II dissociable subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256271208|gb|EEU06290.1| Rpb7p [Saccharomyces cerevisiae JAY291]
gi|259145642|emb|CAY78906.1| Rpb7p [Saccharomyces cerevisiae EC1118]
gi|285811422|tpg|DAA12246.1| TPA: Rpb7p [Saccharomyces cerevisiae S288c]
gi|323305480|gb|EGA59224.1| Rpb7p [Saccharomyces cerevisiae FostersB]
gi|323334047|gb|EGA75432.1| Rpb7p [Saccharomyces cerevisiae AWRI796]
gi|323349147|gb|EGA83378.1| Rpb7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355561|gb|EGA87382.1| Rpb7p [Saccharomyces cerevisiae VL3]
gi|349577455|dbj|GAA22624.1| K7_Rpb7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766199|gb|EHN07698.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP +++ + +LL++ T GY L V +NI
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKTKLLEE-VEGSCTGKFGYILCVLDYDNIDI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 QRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|401838577|gb|EJT42119.1| RPB7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP +++ + +LL++ T GY L V +NI
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKAKLLEE-VEGSCTGKFGYILCVLDYDNIDI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 QRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|302837432|ref|XP_002950275.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
gi|300264280|gb|EFJ48476.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
Length = 176
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 96/181 (53%), Gaps = 10/181 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L ++ + ++ GP L+ I +L+ + T GY +AVT +++IG
Sbjct: 1 MFYYLTLNKSIDIHPKHF---GPKLREVIREKLIAE-TEGTCTGKYGYVVAVTKVDDIGR 56
Query: 61 GRVREN-TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
GR+R++ +G F V + I + ++ EVLD V V K G F + GP++ +++T +P
Sbjct: 57 GRIRQDQSGFATFDVTYGCIVCRPYKKEVLDAVVTSVNKMGFFAQAGPLQ-LFVTQHLIP 115
Query: 120 -DYRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSC 177
++ + + + ++S ++ I+ VRV ++G K+ E + +++ D+LG +
Sbjct: 116 EEFEFDSSGDSSWVSVDQTTHIQPGTHVRVRILGIKY--DPTEVFCIATMKDDYLGVIGS 173
Query: 178 E 178
+
Sbjct: 174 D 174
>gi|401624138|gb|EJS42207.1| rpb7p [Saccharomyces arboricola H-6]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP +++ + +LL++ T GY L V +NI
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKAKLLEE-VEGSCTGKFGYILCVLDYDNIDI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 QRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLAFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|409045255|gb|EKM54736.1| hypothetical protein PHACADRAFT_175251 [Phanerochaete carnosa
HHB-10118-sp]
Length = 170
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV T+ NIGEG V +G+ F + I F
Sbjct: 19 GPRMLQYLESKLYAD-VEGTCSGQFGYIIAVVTILNIGEGMVLPGSGQAEFITRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD ++ NP + IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASDEQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTKVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|68075119|ref|XP_679476.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|70932637|ref|XP_737810.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56500233|emb|CAI04363.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
gi|56513506|emb|CAH85055.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 177
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ NV++ L GP Q+ I +L + + T+ GY + V + +
Sbjct: 1 MYFVIEEWKNVIIKPSQL---GPKYQQYIE-DMLRNSIEGQCTEKYGYIICVIRIMHSEP 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GRV++ TG ++ V + I FK F+ EVLD V V K G F + GP++ I+++ + +P
Sbjct: 57 GRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLK-IFISRTAIPK 115
Query: 121 Y-RYVQ-AENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
Y Y + A P F S + I+ VR+ + G ++ + F A+ ++ ++LG +
Sbjct: 116 YFEYTEDAHYPCF-SSGSHNIKPQTTVRLKLQGIRY-DLSNMF-AIATINNEYLGCI 169
>gi|256072766|ref|XP_002572705.1| DNA-directed rna polymerase II 19 kD polypeptide rpb7 [Schistosoma
mansoni]
gi|353231053|emb|CCD77471.1| putative dna-directed rna polymerase II 19 kD polypeptide rpb7
[Schistosoma mansoni]
Length = 194
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L D + K G+ +AVT +E+IG G ++ N G V + +V+ I +
Sbjct: 42 GPNLTETVKTKLFSDVEGTCSGK-YGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVY 100
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
+ F+GEV+D V +V K GVF + GP+ I+++ +P
Sbjct: 101 RPFKGEVVDAIVTQVTKVGVFAEAGPL-TIFISKYSVPS 138
>gi|224110118|ref|XP_002198109.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like,
partial [Taeniopygia guttata]
Length = 133
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++N+G
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNVGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVE 109
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+
Sbjct: 57 GVIQPGRGFVLYPVRYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS 105
>gi|378733137|gb|EHY59596.1| DNA-directed RNA polymerase II subunit G [Exophiala dermatitidis
NIH/UT8656]
Length = 169
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y + + + NI GRVR +G+ F +++ I +K F+GE +D V + GVF + GP
Sbjct: 43 YIVCIMDIYNISAGRVRPGSGDAHFTILYRAILWKPFKGETIDCAVSSIKPQGVFCEAGP 102
Query: 108 VENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVS 166
+ PD R+ A P + + IEK VRV +IG + A+
Sbjct: 103 LTVFVSKLHLPPDMRHNPDATPPQYSNNAGDVIEKGSAVRVQLIGLR--SDVGNMYAIGK 160
Query: 167 LEGDFLGPV 175
+ + GP+
Sbjct: 161 MSSQWFGPI 169
>gi|407929414|gb|EKG22244.1| hypothetical protein MPH_00423 [Macrophomina phaseolina MS6]
Length = 171
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + I RL D + Y + V ++ EGRV TG + + V F I +
Sbjct: 19 GPNVHEYIEDRLKQDVEGIQIENY--YIICVMDSQDKSEGRVLPGTGYIEYTVHFKAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY-RY-VQAENPVFLSEKNPKI 139
+ F+GE+LDG V V+ G F+ GP+ N+++ S +P +Y A P + + I
Sbjct: 77 RPFKGEILDGIVSAVVDSGFFVDVGPL-NVFVASSMIPSSIKYDGNATPPQWTDNADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
EK +RV + G + A+ +++ D+LGP+
Sbjct: 136 EKGTHIRVKIKGIR--TELGNMYAIATIKEDYLGPLG 170
>gi|354610170|ref|ZP_09028126.1| DNA-directed RNA polymerase [Halobacterium sp. DL1]
gi|353194990|gb|EHB60492.1| DNA-directed RNA polymerase [Halobacterium sp. DL1]
Length = 190
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ + +L V VP ++L GP L V RLL D + +D+G + VT + ++G+
Sbjct: 1 MYKRARLKDTVEVPPQHLGDVGPDL----VKRLLQDKLEGRMDEDIGSIVTVTEVHDLGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V + V + F +TF EV+DG + +V+ G F+ GPV+ + +
Sbjct: 57 GAVLPSRPGVYYDAEFDAVTFDPEMQEVVDGEIVEVVSFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSL 167
Y EN S E N I VR ++ TK ++ ++ + L
Sbjct: 117 YLAFDEENQQLASRESNSVIGTGDAVRARIV-TKSIDERNPRESKIGL 163
>gi|169846764|ref|XP_001830096.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
gi|116508866|gb|EAU91761.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
Length = 170
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L +D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPQMLSYLETKLYND-VEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD ++ NP + ++ IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADVGPLSVFVSHQLIHPDMKFDPNSNPPSFASEDQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTKVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|240848959|ref|NP_001155524.1| DNA-directed RNA polymerase II subunit RPB7 [Acyrthosiphon pisum]
gi|239792200|dbj|BAH72468.1| ACYPI003367 [Acyrthosiphon pisum]
Length = 172
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 10/176 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +V++ GP L ++ +L + T G+ +AVT ++NIG
Sbjct: 1 MFYHIALEHDVLLHPRYF---GPQLLDTVKQKLYRE-VEGTCTGKYGFVIAVTHIDNIGC 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G + G V++ V + I F+ F+GEVL+ V ++ K G+F + GP+ + +++ +P
Sbjct: 57 GLILPGQGFVVYTVKYKAIVFRPFKGEVLEAVVTQLNKVGMFAEIGPL-SCFISHHSIPS 115
Query: 120 DYRYV-QAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ ++ P + S E+N I+ + +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 116 ELQFCPNTSPPCYKSKEENIAIQPEDTIRLKIVGTR-VDASGIF-AIGTLMDDYLG 169
>gi|50305083|ref|XP_452500.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641633|emb|CAH01351.1| KLLA0C06787p [Kluyveromyces lactis]
Length = 171
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGI 79
GP ++R ++ +LL + T GY L V ENI GR+ G F V + +
Sbjct: 19 GPQMKRYLMTKLLQE-VEGTCTGKFGYILCVLDCENIEIERGRILPTDGSAEFTVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEVLDG V G ++ GP+ +++++ MP D + NP
Sbjct: 78 VWKPFKGEVLDGIVSSCTNLGFEVEVGPL-SVFVSPFLMPEDLTFNSGSNPPSYQSSEQI 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
I K VR+ ++G + A+ S++ D+LG
Sbjct: 137 ITKGSRVRLKIVGAR--SEVNSIYAIGSIKEDYLG 169
>gi|213403826|ref|XP_002172685.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
gi|212000732|gb|EEB06392.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
Length = 172
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAV--TTLENIGEGRVRENTGEVLFPVVFSGI 79
GP ++ + +LL D + GY + V + +I +G+V G F V + I
Sbjct: 20 GPHMRDYLKAKLLAD-VEGTCSGQYGYIICVLDSNTIDIDKGKVIPGQGFAEFEVKYRAI 78
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI 139
++ FRGEV+D V V K G F GP+ + PD + A NP S ++ I
Sbjct: 79 LWRPFRGEVVDAVVTTVNKMGFFADVGPLSVFVSSHLVPPDMTFDPAANPPNYSGEDQVI 138
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
EK VR+ ++GT+ E A+ +++ D+LG
Sbjct: 139 EKGSNVRLKIVGTR--TDATEIFAIATMKEDYLG 170
>gi|402585420|gb|EJW79360.1| DNA-directed RNA polymerase II subunit RPB7 [Wuchereria bancrofti]
Length = 107
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L ++ T G+ +AVTT++NIG G ++ G VL+PV + I F
Sbjct: 19 GPDLLETVKRKLFNE-VEGTCTGKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPV 108
+ F+G+V+D V++V K G+F GP+
Sbjct: 78 RPFKGQVVDAVVNQVNKVGLFCDIGPL 104
>gi|19074596|ref|NP_586102.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069238|emb|CAD25706.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329612|gb|AGE95883.1| DNA-directed RNA polymerase II 19kDa subunit [Encephalitozoon
cuniculi]
Length = 155
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 18/155 (11%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP +Q I LL ++ GY + V +++ I E R+ TGE +F V + +T
Sbjct: 19 GPNIQALIEEYLLSKVEGSCSSS--GYVVMVLSIDEISESRIIL-TGETIFTVKYKALTL 75
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K +GEV+D V + K GVF GP+ ++++ ++P+ FL E +I K
Sbjct: 76 KPLKGEVIDANVVETNKMGVFASVGPL-TVFISNHQIPN----------FLLEN--EITK 122
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+V++R+ +IGTK +++ R + A+ +L D LG +S
Sbjct: 123 NVMIRLKIIGTK-IDSTRIY-AVGTLNDDSLGIIS 155
>gi|396081803|gb|AFN83418.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon romaleae
SJ-2008]
Length = 155
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP +Q I LL ++ GY + V +++ + E R+ TGE +F V + +T
Sbjct: 19 GPNIQTLIEEYLLSKVEGSCSSS--GYVVMVLSIDEVSESRIIL-TGETIFTVKYKALTL 75
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GE++D V + K GVF GP+ ++++ ++P+ FL E +I K
Sbjct: 76 KPFKGEIIDANVVETNKMGVFASVGPL-TVFISNHQIPN----------FLLEN--EITK 122
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
D+++R+ +IGTK + A+ +L D LG +
Sbjct: 123 DIMIRLKIIGTKI--DSTKIYAVGTLNDDSLGII 154
>gi|444319100|ref|XP_004180207.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
gi|387513249|emb|CCH60688.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NI 58
MF L N+ + GP +++ + +LL + T GY L V + +I
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKTKLLQE-VEGSCTGKFGYILCVLDYDKIDI 56
Query: 59 GEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 ERGRIIPTDGSAEFTVRYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D ++ NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLQFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|340992705|gb|EGS23260.1| hypothetical protein CTHT_0009270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +A+ +I EGR+ +G F V + + ++ F+ EV+D V V HG F + GP
Sbjct: 43 YVIAIMDTFDISEGRILPGSGLAEFTVGYRAVVWRPFKNEVIDAIVTTVNPHGFFAQAGP 102
Query: 108 VENIYLTCSKMPD-YRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
+ ++++ +PD +Y A P F + + IE+ VRV +IG + E A+
Sbjct: 103 LR-LFVSTHLIPDEIKYDASATPPQFTNNADIVIEQGTHVRVKIIGLR--TEVGEMWAIG 159
Query: 166 SLEGDFLG 173
++ GDFLG
Sbjct: 160 TINGDFLG 167
>gi|336272519|ref|XP_003351016.1| hypothetical protein SMAC_04320 [Sordaria macrospora k-hell]
gi|336464760|gb|EGO53000.1| hypothetical protein NEUTE1DRAFT_150414 [Neurospora tetrasperma
FGSC 2508]
gi|350296863|gb|EGZ77840.1| putative DNA-directed RNA polymerase II chain Rpb7 [Neurospora
tetrasperma FGSC 2509]
gi|380090783|emb|CCC04953.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDLG-------YFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
L S R + + K KD+ Y +A+ ++ EGR+ G F V +
Sbjct: 13 LHPSYFGRNMHELVTTKLVKDVEGTCAGDYYIIAIMDAFDVSEGRILPGNGLAEFTVKYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYV--QAENPVFLSEK 135
+ ++ F+GEV+D V + HG F + GP+ +I+++ MP+ + A P F +
Sbjct: 73 AVVWRPFKGEVVDAIVFSINPHGFFCQAGPL-SIFVSSHLMPEEIHFDPNATPPQFTNNA 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV + G + E A+ S+ GDFLG
Sbjct: 132 DMVIEPGTHVRVKIGGLR--TELGEMYAIGSINGDFLG 167
>gi|448725121|ref|ZP_21707607.1| DNA-directed RNA polymerase subunit E' [Halococcus morrhuae DSM
1307]
gi|445801029|gb|EMA51374.1| DNA-directed RNA polymerase subunit E' [Halococcus morrhuae DSM
1307]
Length = 191
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP + L + +V RLL D + +++G ++VT + +IG+
Sbjct: 1 MYKRVRLTDTVEVPPQLL----ADVSAGMVKRLLQDKLEGRLDEEVGSIVSVTEVHDIGD 56
Query: 61 GRV----RENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
GRV R++ G V + F +TF EV+DG V +++ G F+ GP++ + L S
Sbjct: 57 GRVPPGRRDHEGSVYYEAEFDAVTFDPQMQEVIDGEVVEIVNFGAFVGIGPIDGL-LHVS 115
Query: 117 KMPDYRYVQAENPVFLSEKN 136
++ D E+ L+ +
Sbjct: 116 QISDEYLAYDEDGQMLASRE 135
>gi|440790049|gb|ELR11338.1| DNAdirected RNA polymerase II subunit RPB7, putative, partial
[Acanthamoeba castellanii str. Neff]
Length = 153
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
R+ +++ L + G+ + VT++ +G G++ + TG V FPV + I F+ F+G
Sbjct: 21 RNTIIQKLHTEVEGTCSGRYGFIIMVTSIATVGLGKINDGTGMVTFPVAYRAIVFRPFKG 80
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKDVVV 145
EV+D V +V K G + GP++ ++++ +P D + E+ +++ KI KD
Sbjct: 81 EVVDAVVTQVNKMGFMAEVGPLQ-VFVSKHLIPTDMTFDPTEHCFASEDESVKISKD--- 136
Query: 146 RVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
EF A+ S++ D+LG +S
Sbjct: 137 -------------DEF-AIGSIKEDYLGLIS 153
>gi|38567178|emb|CAE76471.1| probable DNA-directed RNA polymerase II chain Rpb7 [Neurospora
crassa]
Length = 167
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDLG-------YFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
L S R + + K KD+ Y +A+ ++ EGR+ G F V +
Sbjct: 13 LHPSYFGRNMHELVTTKLVKDVEGTCAGDYYIIAIMDAFDVSEGRILPGNGLAEFTVKYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYV--QAENPVFLSEK 135
+ ++ F+GEV+D V + HG F + GP+ +I+++ MP+ + A P F +
Sbjct: 73 AVVWRPFKGEVVDAIVFSINPHGFFCQAGPL-SIFVSSHLMPEEIHFDPNATPPQFTNNA 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV + G + E A+ S+ GDFLG
Sbjct: 132 DMVIEPGTHVRVKIGGLR--TELGEMYAIGSINGDFLG 167
>gi|148642257|ref|YP_001272770.1| DNA-directed RNA polymerase subunit E' [Methanobrevibacter smithii
ATCC 35061]
gi|222444570|ref|ZP_03607085.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
DSM 2375]
gi|261350890|ref|ZP_05976307.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
gi|148551274|gb|ABQ86402.1| DNA-dependent RNA polymerase, subunit E, RpoE [Methanobrevibacter
smithii ATCC 35061]
gi|222434135|gb|EEE41300.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2375]
gi|288860228|gb|EFC92526.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
Length = 185
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
+ ++ L+D + K LG + V +E IGEGR+ G VVF+ I FK + EV
Sbjct: 22 VAIQTLNDTYNGRLDKKLGLLICVNEIEEIGEGRLIMGDGASYHNVVFNAIFFKPEQQEV 81
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY-RYVQAENPVFLSEKNPKIEKDVVVRV 147
+DG V ++ + G F++ GP++ + DY Y + E N +++ +VR
Sbjct: 82 IDGEVIEIAEFGAFVRIGPMDGLVHVSQVTDDYINYDSKRGALLAKESNKTLDEGDLVRT 141
Query: 148 IVIG 151
++
Sbjct: 142 RIVA 145
>gi|307105977|gb|EFN54224.1| hypothetical protein CHLNCDRAFT_36106 [Chlorella variabilis]
Length = 174
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L+ I RL + G+ L+V + + G+G +RE +G +F + + I
Sbjct: 19 GPKLREEIERRLRQE-VEGTCNGRYGFILSVMGVLDTGKGLIREGSGSAVFNLKYKCICM 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD-YRYVQAENPVF-LSEKNPKI 139
K F+G+V+D V V K G F + GP++ ++++ +P+ + + A P + ++ KI
Sbjct: 78 KPFKGQVMDVVVTSVNKMGFFAEAGPLQ-VFVSNHLIPEGFEFNTAHEPCYQTADGEQKI 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
VR+ ++GT+ ++A F A+ S++ D+LG VS
Sbjct: 137 VPGSEVRLRIVGTR-VDASDIF-AVGSIKEDYLGVVS 171
>gi|406604823|emb|CCH43698.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 150
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 41 KATKDLGYFLAVTTLE--NIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLK 98
T GY + V +IG+G++ + G F V + + +K F+GEV+DG +V K
Sbjct: 16 SCTGKFGYIMCVLDCMSIDIGKGKIIPSDGSAEFEVKYRAVVWKPFKGEVVDGVCSQVSK 75
Query: 99 HGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA 157
G F+ GP+ +++++ +P D + + NP + IEK VR+ ++GT+
Sbjct: 76 LGFFVDVGPL-SVFVSTHLIPSDMSFNPSSNPPAYQSDDQVIEKGSRVRLKIVGTR--AD 132
Query: 158 EREFQALVSLEGDFLG 173
A+ S++ DFLG
Sbjct: 133 VNAIYAIGSIKEDFLG 148
>gi|164427822|ref|XP_965434.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
gi|157071898|gb|EAA36198.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
Length = 150
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +A+ ++ EGR+ G F V + + ++ F+GEV+D V + HG F + GP
Sbjct: 22 YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGP 81
Query: 108 VENIYLTCSKMPDYRYV--QAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
+ +I+++ MP+ + A P F + + IE VRV + G + E A+
Sbjct: 82 L-SIFVSSHLMPEEIHFDPNATPPQFTNNADMVIEPGTHVRVKIGGLR--TELGEMYAIG 138
Query: 166 SLEGDFLG 173
S+ GDFLG
Sbjct: 139 SINGDFLG 146
>gi|402086572|gb|EJT81470.1| hypothetical protein GGTG_01448 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 170
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G +Q + RLL D + + Y +++ +I G++ G F V + + +
Sbjct: 19 GKNMQELVTTRLLQDV--EGSCQGNYYIISIMDTFDISPGKILPGNGLAEFTVGYRAVVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY-RY-VQAENPVFLSEKNPKI 139
+ F+GE +D V V HG F GP+ ++++ +P + +Y A P F +++ ++
Sbjct: 77 RPFKGETVDAIVDSVNPHGFFANAGPLR-LFVSEHMIPHHVKYDPNASPPQFTDKEDYRV 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
E VRV ++GT+ A+ ++ DFLGP+S
Sbjct: 136 EPGTHVRVKIVGTR--SEVTNMWAIGTVNEDFLGPLS 170
>gi|210075719|ref|XP_002143054.1| YALI0D11627p [Yarrowia lipolytica]
gi|199425798|emb|CAR64319.1| YALI0D11627p [Yarrowia lipolytica CLIB122]
Length = 190
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE-NIGEGRVRENTGEVLFPVVFSGIT 80
GP + + + +LL D T + GY L V +IG+GRV + G F V + I
Sbjct: 39 GPQMGQYLRSKLLAD-VEGTCTGEFGYILCVLDQPFDIGKGRVVPSNGSAEFTVNYRAIV 97
Query: 81 FKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIE 140
++ F+ EV+D V V K G F GP+ + PD ++ + NP ++ IE
Sbjct: 98 WRPFKNEVVDAIVTNVNKMGFFGDVGPLSVFVSSHLIPPDMKFNPSANPPAYVSEDQVIE 157
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
K VR+ ++G + E A+ +++ D+LG V
Sbjct: 158 KGSRVRLKIVGVR--ADVGEMFAIGTIKEDYLGLV 190
>gi|395646854|ref|ZP_10434714.1| DNA-directed RNA polymerase [Methanofollis liminatans DSM 4140]
gi|395443594|gb|EJG08351.1| DNA-directed RNA polymerase [Methanofollis liminatans DSM 4140]
Length = 191
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 6/175 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V L V VP L G L R++++ L K++G F+AVT + N+GE
Sbjct: 1 MYYRVTLDDKVRVPPHRL---GEDL-RNVILDELQKQLEGSIDKEIGIFIAVTKINNVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F + ++ EV++G V + G F+ GP++ + D
Sbjct: 57 GEIVHGDGAVYYDVTFEALVLRLVLQEVIEGEVVETTSFGAFVSLGPIDAMLHVSQISDD 116
Query: 121 Y-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLG 173
Y Y + N + E I+ +R V+ E E RE + +++ LG
Sbjct: 117 YIAYDEKNNTLNCQETKRSIQVGEAIRCRVVTLSLNEREPRESKIGLTMRQAGLG 171
>gi|366988751|ref|XP_003674143.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
gi|342300006|emb|CCC67762.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
Length = 171
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP +++ + +LL + T GY L V + I
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQFLKTKLLQE-VEGSCTGKFGYILCVLDYDKIEI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + I FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 ERGRILPTDGSAEFQVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PSDLNFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|145351559|ref|XP_001420140.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580373|gb|ABO98433.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 179
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF V L N+ + + A+ ++++ L + G+ + VT L + E
Sbjct: 1 MFFHVNLERNITLEPRHFGAR----MKAVLEEKLRHEVEGTCSGRYGFIVMVTRLAEVSE 56
Query: 61 GRVREN-TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
G V ++ T F + + + F+ F+GEV+D V +V K G F + GP++
Sbjct: 57 GVVTDDGTARAKFHIKYDCVVFRPFKGEVMDAVVTQVNKFGFFAEAGPLQLFVSNALITE 116
Query: 120 DYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
D ++ EN ++ +I++D VRV ++G + ++A F + +++ D+LG +
Sbjct: 117 DMQFDSSGENCYVSDDQQIRIQRDASVRVRIVGMR-IDANDIF-CIATIKDDYLGLI 171
>gi|410080111|ref|XP_003957636.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
gi|372464222|emb|CCF58501.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
Length = 171
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGI 79
GP +++ + +LL + T GY L V + I GR+ G F V + +
Sbjct: 19 GPRMKQYLKTKLLQE-VEGSCTGKFGYILCVLNYDQIEIERGRILPTDGSAEFKVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
FK F+GEV+DGTV +HG ++ GP++ +++T MP D + NP
Sbjct: 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQDLTFNAGSNPPSYQSSEDV 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I +RV + G + A+ S++ D+LG +
Sbjct: 137 ITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|303390119|ref|XP_003073291.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
gi|303302436|gb|ADM11931.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
Length = 155
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP +Q I LL ++ GY + V +++ I E R+ TGE +F V + +T
Sbjct: 19 GPNIQTLIEEYLLSKVEGSCSSS--GYVIMVLSIDEISESRIIL-TGETIFTVKYKALTL 75
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K +GE++D V + K GVF GP+ ++++ ++P+ FL E +I K
Sbjct: 76 KPLKGEIVDANVVETNKMGVFASVGPL-TVFISNHQIPN----------FLLEN--EITK 122
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
DV++R+ +IGTK + A+ +L D LG +
Sbjct: 123 DVMIRLKIIGTKI--DSTKIYAVGTLNDDSLGII 154
>gi|336368539|gb|EGN96882.1| hypothetical protein SERLA73DRAFT_185108 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381330|gb|EGO22482.1| hypothetical protein SERLADRAFT_473371 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLQFLESKLYSD-VEGTCSGAFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F + GP+ PD ++ NP + ++ IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFAEVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEDQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTRVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|254581916|ref|XP_002496943.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
gi|238939835|emb|CAR28010.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
Length = 171
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NI 58
MF L N+ + GP ++ + +LL + T GY L V + +I
Sbjct: 1 MFFIKDLSLNITLHPSYF---GPRMKDFLKTKLLQE-VEGSCTGKFGYILCVLDYDRIDI 56
Query: 59 GEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + I FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 ERGRILPTDGSAEFTVRYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLMFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|242210404|ref|XP_002471045.1| predicted protein [Postia placenta Mad-698-R]
gi|220729947|gb|EED83813.1| predicted protein [Postia placenta Mad-698-R]
Length = 170
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLQFLESKLYSD-VEGTCSGQFGYIIAVVSILDIGKGMVISGSGQAEFITRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD ++ NP + ++ IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDLKFDPNSNPPSFASEDQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTKVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|412992538|emb|CCO18518.1| predicted protein [Bathycoccus prasinos]
Length = 149
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 47 GYFLAVTTLENIGEGRVREN-TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKC 105
G+ + +T +EN+ EG + ++ T F V + + ++ F+ EVLD V +V K G F +
Sbjct: 10 GFIVCITHIENVSEGIITDDGTARAKFAVEYDCVAYRPFKNEVLDAVVTQVNKFGFFAEA 69
Query: 106 GPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQAL 164
GP++ ++++ S +P D +YV EN + I D VRV ++G + ++A F +
Sbjct: 70 GPLQ-LFVSNSLVPDDVKYVTDENCYKSDDGQITIGVDCEVRVKIVGMR-IDANDIF-CI 126
Query: 165 VSLEGDFLGPVS 176
+++ D+LG +
Sbjct: 127 ATIKEDYLGLIG 138
>gi|367005626|ref|XP_003687545.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
gi|357525849|emb|CCE65111.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
Length = 171
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+++ GP +++ + +LL + T GY L V + I
Sbjct: 1 MFFIKDLSLNIILHPSFF---GPRMKQYLKTKLLQE-VEGSCTGKFGYILCVLDYDKIEI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK F+GEV+DGTV +HG + GP++ +++T M
Sbjct: 57 ERGRILATDGSAEFTVKYRAVVFKPFKGEVVDGTVVSCSQHGFEAQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I VRV + G + A+ S++ D+LG +
Sbjct: 116 PQDLVFNAGSNPPSYQSAEDVITIKSRVRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|392585942|gb|EIW75280.1| hypothetical protein CONPUDRAFT_132203 [Coniophora puteana
RWD-64-598 SS2]
Length = 170
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV ++ +IG G V +G+ F + I F
Sbjct: 19 GPRMTQFLESKLYAD-VEGTCSGQFGYIIAVVSILDIGRGMVLSGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD ++ NP + + IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDLKFDPNSNPPSFASDDQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VRV ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTRVRVKLVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|170106467|ref|XP_001884445.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640791|gb|EDR05055.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 170
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLNFLESKLYSD-VEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD R+ NP + IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMRFDPNSNPPSFASDEQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTRVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|409081234|gb|EKM81593.1| hypothetical protein AGABI1DRAFT_111877 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196468|gb|EKV46396.1| hypothetical protein AGABI2DRAFT_193120 [Agaricus bisporus var.
bisporus H97]
Length = 170
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLSFLESKLYSD-VEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ P+ R+ NP + ++ IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADAGPLTVFISHQLIHPNMRFDPNSNPPSFASEDQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTRVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|156835988|ref|XP_001642239.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112712|gb|EDO14381.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 171
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP +++ + +LL + T GY L V + I
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKTKLLQE-VEGSCTGKFGYILCVLDYDKIEI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + I FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 ERGRILPTDGSAEFTVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLIFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|365981979|ref|XP_003667823.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
gi|343766589|emb|CCD22580.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
Length = 171
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP +++ + +LL + T GY L V + I
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQFLKTKLLQE-VEGSCTGKFGYILCVLDYDKIEI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + I FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 ERGRILPTDGSAEFNVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PSDLMFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|448730672|ref|ZP_21712977.1| DNA-directed RNA polymerase subunit E' [Halococcus saccharolyticus
DSM 5350]
gi|445793113|gb|EMA43703.1| DNA-directed RNA polymerase subunit E' [Halococcus saccharolyticus
DSM 5350]
Length = 190
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L + VP L P L V RLL D + +D+G ++V + +IG+
Sbjct: 1 MYKRVELTDTIEVPPPLLGDVSPGL----VKRLLQDKLEGRLDEDVGSVVSVIDVHDIGD 56
Query: 61 GRV----RENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
GRV R + G V + F +TF EV+DG V +++ G F+ GPV+ +
Sbjct: 57 GRVLPGRRGHEGSVYYEATFDAVTFDPQMQEVVDGEVVEIVNFGAFVGIGPVDGLLHVSQ 116
Query: 117 KMPDYRYVQAENPVFLSEKN 136
+Y EN S ++
Sbjct: 117 ISDEYLAFDEENQQLASRES 136
>gi|367008802|ref|XP_003678902.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
gi|359746559|emb|CCE89691.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
Length = 171
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NI 58
MF L N+ + GP ++ + +LL + T GY L V + +I
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPHMKDYLKTKLLQE-VEGSCTGKFGYILCVLDYDKIDI 56
Query: 59 GEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK FRGEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 ERGRILPTDGSADFIVRYRAVVFKPFRGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLIFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>gi|389739088|gb|EIM80282.1| hypothetical protein STEHIDRAFT_105350 [Stereum hirsutum FP-91666
SS1]
Length = 170
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLQFLESKLYSD-VEGTCSGQFGYIIAVVSILDIGKGMVLGGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD ++ NP + + IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDMKFDPTSNPPSFASEEQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTKVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|296423748|ref|XP_002841415.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637653|emb|CAZ85606.1| unnamed protein product [Tuber melanosporum]
Length = 180
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFL-AVTTLENIGEGRVRENTGEVLFPVVFSGIT 80
GP ++ ++ +L +D + YF+ V ENI GR+ G+ F + + +
Sbjct: 19 GPHMRDYLIHKLHEDVEGSCTGR---YFIICVIEYENITLGRIIPGKGDAEFTITYKAVV 75
Query: 81 FKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK- 138
++ F+GE +DG V V K G F + GP+ ++++ +P D ++ NP S+ +
Sbjct: 76 WRPFKGETVDGVVSSVNKMGFFAEVGPL-TVFVSSHLIPRDIKFDPTSNPPQFSDNGDQI 134
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
I K +R+ ++GT+ + A+ S++ D+LG
Sbjct: 135 INKGAHIRIKLMGTR--SDVGKMHAIGSIKEDYLG 167
>gi|255717771|ref|XP_002555166.1| KLTH0G02926p [Lachancea thermotolerans]
gi|238936550|emb|CAR24729.1| KLTH0G02926p [Lachancea thermotolerans CBS 6340]
Length = 171
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLEN--IGEGRVRENTGEVLFPVVFSGI 79
GP +++ + +LL + T GY L V EN I GR+ G F V + +
Sbjct: 19 GPQMKQYLRTKLLQE-VEGTCTGKFGYILCVLDCENVEIERGRILPGDGSAEFTVKYRAV 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK 138
+K F+GEV+DG V G + GP+ +++++ MP D Y NP
Sbjct: 78 VWKPFKGEVVDGVVSSCTNLGFEVDVGPL-SVFVSPFLMPEDLSYNSGSNPPSYQSSEQI 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
I K VR+ ++G + A+ S++ D+LG
Sbjct: 137 ITKGSRVRLKIVGAR--SEVNSIYAIGSIKEDYLG 169
>gi|448732371|ref|ZP_21714652.1| DNA-directed RNA polymerase subunit E' [Halococcus salifodinae DSM
8989]
gi|445804944|gb|EMA55174.1| DNA-directed RNA polymerase subunit E' [Halococcus salifodinae DSM
8989]
Length = 190
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L + VP L P L V +LL D + +D+G ++V +++IG+
Sbjct: 1 MYKRVELTDTIEVPPPLLGDVSPAL----VKQLLQDKLEGRLDEDVGSVVSVIDVQDIGD 56
Query: 61 GRV----RENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
GRV R + G V + F +TF EV+DG V +++ G F+ GP++ +
Sbjct: 57 GRVLPGRRGHEGSVYYEATFDAVTFDPQMQEVVDGEVVEIVNFGAFVGIGPIDGLLHVSQ 116
Query: 117 KMPDYRYVQAENPVFLSEKNPK 138
+Y EN S ++ +
Sbjct: 117 ISDEYLAFDEENQQLASRESDQ 138
>gi|154149792|ref|YP_001403410.1| DNA-directed RNA polymerase subunit E' [Methanoregula boonei 6A8]
gi|153998344|gb|ABS54767.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 213
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+ L V VP L G L + +++ +L + K+LG F+AVT +E++GE
Sbjct: 1 MYYKMTLEDKVRVPPNRL---GEKLDK-VILEVLQEQLEGSIDKELGVFIAVTKVEHVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F G+ ++ EV++G V + G F+ GP++ + L S++ D
Sbjct: 57 GEIVPGDGGVYYDVKFEGLVLRLALQEVIEGIVVETTSFGAFISLGPIDAM-LHVSQISD 115
>gi|320582151|gb|EFW96369.1| RNA polymerase II subunit [Ogataea parapolymorpha DL-1]
Length = 172
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAV--TTLENIGEGR-VRENTGEVLFPVVFSG 78
GP + + + +LL D T GY + V + ++G+G+ V G F V +
Sbjct: 19 GPQMNQYLQQKLLTD-VEGTCTGQFGYIICVLDSMSIDVGKGKIVPGQQGYAEFEVKYRA 77
Query: 79 ITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNP 137
+ +K F+GEV+D V V G F GP+ +++++ +P D +Y + P ++
Sbjct: 78 VVWKPFKGEVVDAIVSSVNNMGFFADVGPL-SVFISKHLIPKDMKYTPSHTPPAYISEDQ 136
Query: 138 KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I K VR+ +IGT+ A+ S++ D+LGP+
Sbjct: 137 VIMKGSKVRIKIIGTR--SDVNSISAIGSIKEDYLGPL 172
>gi|358395852|gb|EHK45239.1| hypothetical protein TRIATDRAFT_299936 [Trichoderma atroviride IMI
206040]
Length = 171
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDLG-------YFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
L S R + D K KD+ Y +++ +I EGR+ + G F V +
Sbjct: 13 LHPSYFGRNMHDLVTSKLLKDVEGTCAGSYYIISIMDTFDISEGRILPSNGLAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V+ + G F + GP+ ++++ +P D ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDIKWDPNATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV +IGT+ E A+ S++ D+LG
Sbjct: 132 DTVIEPGTHVRVKIIGTR--TEVGEMWAIGSIKEDYLG 167
>gi|449548439|gb|EMD39406.1| hypothetical protein CERSUDRAFT_113038 [Ceriporiopsis subvermispora
B]
Length = 170
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLQFLESKLYSD-VEGTCSGQFGYIIAVVSILDIGKGMVLPGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F GP+ PD ++ NP + + IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPDLKFDPNSNPPSFASDDQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ +R+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTRIRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|354469798|ref|XP_003497310.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
Length = 172
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L ++ +L + K + +AVTT++NIG G ++ G L V F I F
Sbjct: 19 GPNLLNTVKQKLFTEVEGTCKGK-YDFVIAVTTIDNIGAGEIQPGQGFDLHTVKFKAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK--I 139
+ F+GEV+D V +V K G+F + GP+ S + + NP I
Sbjct: 78 QPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMGEDIVI 137
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
++D +R+ ++GT+ + + A+ S D+LG VS
Sbjct: 138 QQDDEIRLKIVGTRV--DKNDIFAIGSPMDDYLGLVS 172
>gi|67522128|ref|XP_659125.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|40744621|gb|EAA63777.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|259486847|tpe|CBF85037.1| TPA: RNA polymerase II subunit 7 (AFU_orthologue; AFUA_8G05300)
[Aspergillus nidulans FGSC A4]
Length = 169
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV G+ + + + I +
Sbjct: 19 GPNVREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPGNGQAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D R+ P + + I
Sbjct: 77 KPFRGETVDALVTSVKPTGIFTLAGPL-SVFIARKNIPSDIRWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
EK +R+ ++G K A A+ +++ D+LGP+
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLGPL 169
>gi|393221726|gb|EJD07210.1| hypothetical protein FOMMEDRAFT_137613 [Fomitiporia mediterranea
MF3/22]
Length = 170
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLQFLETKLYAD-VEGTCSGQFGYIIAVVSVLDIGKGMVLPGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+GEV+DG V+ V K G F + GP+ PD ++ NP + IEK
Sbjct: 78 KPFKGEVVDGVVNNVNKMGFFAEVGPLTVFVSHQLIHPDMKFDPNSNPPSFASDEQIIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTKVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|83765518|dbj|BAE55661.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864670|gb|EIT73964.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 169
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV ++G+ + + + I +
Sbjct: 19 GPNVREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
EK +R+ ++G K A A+ +++ D+LGP+
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLGPL 169
>gi|365761292|gb|EHN02956.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 150
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 25 LQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGITFK 82
+++ + +LL++ T GY L V +NI GR+ G F V + + FK
Sbjct: 1 MKQYLKAKLLEE-VEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 59
Query: 83 IFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEK 141
F+GEV+DGTV +HG ++ GP++ +++T MP D + NP I
Sbjct: 60 PFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQDLTFNAGSNPPSYQSSEDVITI 118
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+RV + G + A+ S++ D+LG +
Sbjct: 119 KSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 150
>gi|124802663|ref|XP_001347553.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23495135|gb|AAN35466.1|AE014833_37 DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 177
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 8/176 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ NV++ L GP Q+ I +L + + + GY + V + +
Sbjct: 1 MYFVIEEWKNVIIKPSQL---GPRYQQYIE-DMLRNSVEGQCSVKYGYVICVIRIIHSEP 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GRV++ TG ++ V + I FK F+ EVLD V V K G F + GP++ I+++ + +P
Sbjct: 57 GRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLK-IFISRTAIPK 115
Query: 121 Y-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
Y Y + + S + I+ VR+ + G ++ + F A+ ++ ++LG +
Sbjct: 116 YFEYSEDLHYPCFSSGDYNIKPQTTVRIKLQGIRY-DLSNMF-AIATINNEYLGCI 169
>gi|358388804|gb|EHK26397.1| hypothetical protein TRIVIDRAFT_86417 [Trichoderma virens Gv29-8]
Length = 171
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDLG-------YFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
L S R + D K KD+ Y +++ +I EGR+ G F V +
Sbjct: 13 LHPSYFGRNMHDLVTSKLLKDVEGTCAGSYYIISIMDTFDISEGRILPGNGLAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V+ + G F + GP+ ++++ +P D ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDIKWDPNATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV +IGT+ E A+ S++ D+LG
Sbjct: 132 DTVIEPGTHVRVKIIGTR--TEVGEMWAIGSIKEDYLG 167
>gi|323309699|gb|EGA62907.1| Rpb7p [Saccharomyces cerevisiae FostersO]
gi|323338133|gb|EGA79367.1| Rpb7p [Saccharomyces cerevisiae Vin13]
gi|392300523|gb|EIW11614.1| Rpb7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 150
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 25 LQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGITFK 82
+++ + +LL++ T GY L V +NI GR+ G F V + + FK
Sbjct: 1 MKQYLKTKLLEE-VEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 59
Query: 83 IFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEK 141
F+GEV+DGTV +HG ++ GP++ +++T MP D + NP I
Sbjct: 60 PFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQDLTFNAGSNPPSYQSSEDVITI 118
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+RV + G + A+ S++ D+LG +
Sbjct: 119 KSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 150
>gi|156086074|ref|XP_001610446.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154797699|gb|EDO06878.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 175
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP Q++I +L + + GY + V + GRV++ TG ++ V + I F
Sbjct: 19 GPSYQQNIE-EMLRNQVEGHCSSKYGYVVCVIRIIQNEVGRVQDGTGMIVVNVKYQAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+ EVLD V V K G F + GP++ + P + Y A NP + ++ I+
Sbjct: 78 KPFKDEVLDAIVTDVNKLGFFAQAGPLKAFVSRTAIQPSFVYDSDAANPCY-TDGTISIK 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
VR+ + G ++ + A+ ++ D+LG
Sbjct: 137 PQTEVRMRIQGIRYDNS--NMFAIATVNADYLG 167
>gi|308808622|ref|XP_003081621.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
gi|116060086|emb|CAL56145.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
Length = 1353
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 47 GYFLAVTTLENIGEGRVREN-TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKC 105
G+ + VT ++++ EG V ++ T F V + + F+ F+GEV+D V +V K G F +
Sbjct: 1218 GFIVMVTRVDDVSEGVVVDDGTARAKFHVKYDCVVFRPFKGEVVDAVVTQVNKFGFFAEA 1277
Query: 106 GPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQAL 164
GP++ D ++ EN ++ +I++D VRV ++G + ++A F +
Sbjct: 1278 GPLQLFVSNALITEDMQFDSSGENCYVSDDQQIRIQRDASVRVRIVGMR-IDANDIF-CI 1335
Query: 165 VSLEGDFLG 173
+++ D+LG
Sbjct: 1336 ATIKDDYLG 1344
>gi|241176966|ref|XP_002399817.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215495205|gb|EEC04846.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
Length = 173
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L+ ++ +L + T G+ +AV T++NIG G ++ G V++PV ++ I F
Sbjct: 17 GPQLEETVKQKLYAE-VEGTCTGKYGFVVAVMTIDNIGAGLIQPGRGFVVYPVRYTAIVF 75
Query: 82 KIFRGEVLDGTVHKVLK-HGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK- 138
+ F+GEVLD V +V K GV +++ ++ +P D ++ NP ++
Sbjct: 76 RPFKGEVLDAVVTQVNKVSGV--GAPDTDSVCISFQSIPSDMQFDPNSNPPCYRTQDEDV 133
Query: 139 -IEKDVVVRVIVIGTK 153
I++D +R+ ++GT+
Sbjct: 134 IIQQDDEIRLKIVGTR 149
>gi|408398876|gb|EKJ78002.1| hypothetical protein FPSE_01790 [Fusarium pseudograminearum CS3096]
Length = 172
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDL-----GYFLAVTTLE--NIGEGRVRENTGEVLFPVVFS 77
L S + R + + K KD+ G + ++ ++ I EGR+ G F V +
Sbjct: 13 LHPSFMGRNMHELVTGKLLKDVEGTCAGSYFIISIMDAFEISEGRILPGLGMAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D VH + G F GP+ ++++ +P D ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAVVHSINPQGFFAHAGPLR-LFVSAHLIPNDVKWDPNATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV +IGT+ E A+ S++ D+LG
Sbjct: 132 DTVIEPQTHVRVKIIGTR--TEVGEMWAIGSIKEDYLG 167
>gi|400601274|gb|EJP68917.1| RNA polymerase Rpb7-like domain-containing protein [Beauveria
bassiana ARSEF 2860]
Length = 219
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDLG-------YFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
L S R + D K KD+ Y +++ +I EG++ + G F V +
Sbjct: 13 LHPSYFGRNMHDLVTSKLLKDVEGTCAGSYYIISIMDTFDISEGKILPSNGLAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V+ + G F + GP+ ++++ +P D ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDTKWDPNATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCENPLD 182
+ IE VRV +IGT+ E A+ S++ D+LG D
Sbjct: 132 DTVIEPSTHVRVKIIGTR--TEVGEMWAIGSIKEDYLGQSGSTESTD 176
>gi|160330989|ref|XP_001712202.1| rpb7 [Hemiselmis andersenii]
gi|159765649|gb|ABW97877.1| rpb7 [Hemiselmis andersenii]
Length = 175
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLEN-IG 59
MF L N+ + A+ +++++V LL + A G + +T + N G
Sbjct: 1 MFFITTLNQNIYISAKYFKKN---IKKNLVSTLLGNVEGSYAG-PFGNIVIITEICNKWG 56
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+G++ T +F V F ITF+ F+GEV D + + G F + G ++ I+++ +++P
Sbjct: 57 KGKLIIGTPSAMFNVTFRAITFRPFKGEVFDSIITNLTNVGFFSEAGALQ-IFVSKNQLP 115
Query: 120 -DYRYVQAENPVFLSEKNP--KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
D++Y ++ VF + +P K KD ++R+ +I K + + +++G FLG
Sbjct: 116 NDFQY-NGKDKVFFNTMSPEEKFCKDSLIRIKIISVK--NEKNSNHVIGTIKGPFLG 169
>gi|407041447|gb|EKE40735.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
nuttalli P19]
Length = 180
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
R+ E TG V+F V F I KI R EV+DG + V K GV + G +NI++T SK+ D
Sbjct: 67 RIAEGTGNVVFSVKFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWKNIHVTASKVADC 126
Query: 122 RYVQ 125
YV+
Sbjct: 127 EYVE 130
>gi|395323800|gb|EJF56256.1| hypothetical protein DICSQDRAFT_175060 [Dichomitus squalens
LYAD-421 SS1]
Length = 170
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP + + + +L D + + GY +AV ++ +IG+G V +G+ F + I F
Sbjct: 19 GPRMLQFLESKLYSD-VEGTCSGEFGYIIAVVSILDIGKGMVMPGSGQAEFVTRYRAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+G+V+DG V+ V K G F GP+ P+ ++ NP + ++ IEK
Sbjct: 78 KPFKGQVVDGVVNNVNKMGFFADVGPLTVFVSHQLIHPELKFDPNSNPPSFASEDQVIEK 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ VR+ ++GT+ ++A F A+ +++ D LG
Sbjct: 138 NTRVRLKIVGTR-VDATEIF-AIGTIKEDHLG 167
>gi|46108676|ref|XP_381396.1| hypothetical protein FG01220.1 [Gibberella zeae PH-1]
Length = 248
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 25 LQRSIVVRLLDDFARRKATKDL-----GYFLAVTTLE--NIGEGRVRENTGEVLFPVVFS 77
L S + R + + K KD+ G + ++ ++ I EGR+ G F V +
Sbjct: 13 LHPSFMGRNMHELVTGKLLKDVEGTCAGSYFIISIMDAFEISEGRILPGLGMAEFTVGYR 72
Query: 78 GITFKIFRGEV------LDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENP 129
+ ++ F+GE +D VH + G F GP+ ++++ +P D ++ A P
Sbjct: 73 AVVWRPFKGETESDLTQVDAVVHSINPQGFFAHAGPLR-LFVSAHLIPNDVKWDPNATPP 131
Query: 130 VFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS---CENP 180
F + ++ IE VRV +IGT+ E A+ S++ D+LGP+S ENP
Sbjct: 132 QFTNNEDTVIEPQTHVRVKIIGTR--TEVGEMWAIGSIKEDYLGPLSNRYWENP 183
>gi|425765811|gb|EKV04459.1| RNA polymerase II subunit 7 [Penicillium digitatum PHI26]
gi|425783900|gb|EKV21717.1| RNA polymerase II subunit 7 [Penicillium digitatum Pd1]
Length = 169
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV G+ + + + I +
Sbjct: 19 GPNMREYLIGRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
EK +R+ ++G K A A+ +++ D+LGP+
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLGPL 169
>gi|386002591|ref|YP_005920890.1| DNA-directed RNA polymerase subunit E' [Methanosaeta harundinacea
6Ac]
gi|357210647|gb|AET65267.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta harundinacea
6Ac]
Length = 190
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 6/177 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+KL V +P + G L+ ++ + L + + R K LG +AV +++IGE
Sbjct: 1 MYKKMKLEGIVRIPPGQM---GDPLEEAVEMALRNKYEAR-VDKTLGTVVAVLGVDDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ G V + F I FK E+++G V +++K G F+ GP + + +
Sbjct: 57 GRILAGDGAVYYDANFDAIVFKPEMQEIVEGEVVEIVKFGAFIGIGPFDGLLHVSQITNE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLGPV 175
Y +N S + N + + VR +I E E RE + +++ LG +
Sbjct: 117 YISYDEKNSRLASKDSNKSLGEGDRVRARIIAISLNEKEPRESKIGLTMRQTGLGKI 173
>gi|307352259|ref|YP_003893310.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307155492|gb|ADN34872.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 189
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 29/187 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+KL V VP L G L S+V+ L KD+G F+AVT + +IGE
Sbjct: 1 MYYKMKLIDKVRVPPNRL---GEDLS-SVVLDELQQQLEGSIDKDIGIFIAVTEIHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F + ++ EV++G V + G F+ GP++ + D
Sbjct: 57 GDIIPGDGAVYYHVEFDAVVLRLAMQEVIEGEVVETTSFGAFVSLGPIDAMLHVSQISDD 116
Query: 121 YRYVQAEN-----------------------PVFLSEKNPKIEK-DVVVRVIVIGT-KWL 155
+ +N + LSE++P+ K + +R +GT +WL
Sbjct: 117 FINYDEKNGRLVCQETRRQISVGDIVRGRVVSLSLSERDPRESKIGLTMRQAGLGTGQWL 176
Query: 156 EAEREFQ 162
E E +
Sbjct: 177 TEEMEAE 183
>gi|189203085|ref|XP_001937878.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|330945443|ref|XP_003306557.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
gi|187984977|gb|EDU50465.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|311315891|gb|EFQ85355.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NIGEGRVRENTGEVLFPVVFSGI 79
GP++++ I LL +++ G + V L+ +I +G+V TG + V + +
Sbjct: 19 GPLIRQHIHRELL----QKEEGSSTGKYTIVCILDSFDISDGKVMPGTGSAEYVVHYKAV 74
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNP 137
++ ++GEV+DG V VL+ G F+ CG ++ ++ S +P + ++ A P + +
Sbjct: 75 VWRPYKGEVMDGIVTSVLRTGFFVDCGSLQA-FVGRSMIPAEIKFDANATPPQWTDDGEQ 133
Query: 138 KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
IEK +R+ + G + E ++ + A+ +++ D+LGP+
Sbjct: 134 VIEKGTNIRIKIKGLR-SEVDKMY-AVGTMKEDYLGPL 169
>gi|71032221|ref|XP_765752.1| DNA-directed RNA polymerase II subunit Rpb7 [Theileria parva strain
Muguga]
gi|84999556|ref|XP_954499.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305497|emb|CAI73822.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
gi|68352709|gb|EAN33469.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Theileria
parva]
Length = 175
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP Q++I +L D T GY + V + GRV++ T ++ V + I F
Sbjct: 19 GPNYQQNIE-EMLRDQVEGHCTNKYGYVVCVIRIVQNDMGRVQDGTAMIVVNVKYQAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+ EVLD V V K G F + GP++ S P++ Y S+ I+
Sbjct: 78 KPFKDEVLDAIVTDVNKLGFFAQAGPLKAFVSRNSIHPNFVYDSDSAYPCYSDGTISIKP 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
VR+ + G K+ + A+ ++ D LG
Sbjct: 138 QSEVRMRLQGIKYDNS--NLFAIATINADHLG 167
>gi|348674301|gb|EGZ14120.1| hypothetical protein PHYSODRAFT_303395 [Phytophthora sojae]
Length = 168
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGI 79
GP L I +RL+++ K GY + VT + E+IG+G +++N+G V F + + I
Sbjct: 19 GPKLHDIIRLRLIEEVEGTSMGK-YGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAI 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP---DYRYVQAENPVFLSEKN 136
F+ F+ +VLD V V + G F GP++ ++++ MP + Y N ++
Sbjct: 78 LFRPFKNQVLDAVVTVVNQLGFFADVGPLQ-VFVSRHAMPTDLNNGYDHESNAWISDDRE 136
Query: 137 PKIEKDVVVRVIVIGTK 153
+I K VR+ ++G
Sbjct: 137 VEIRKGCGVRLKIMGVS 153
>gi|121719878|ref|XP_001276637.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
gi|119404849|gb|EAW15211.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
Length = 169
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV +G + + + I +
Sbjct: 19 GPNVREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPGSGSAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
EK +R+ ++G K A A+ +++ D+LGP+
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLGPL 169
>gi|183231195|ref|XP_655527.2| DNA-directed RNA polymerase II subunit [Entamoeba histolytica
HM-1:IMSS]
gi|169802591|gb|EAL50138.2| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702520|gb|EMD43146.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica KU27]
Length = 180
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
R+ E TG V+F V F I KI R EV+DG + V K GV + G +NI++T SK+ D
Sbjct: 67 RIAEGTGNVVFSVKFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWKNIHVTASKVADC 126
Query: 122 RYVQ 125
YV+
Sbjct: 127 EYVE 130
>gi|167385847|ref|XP_001737514.1| DNA-directed RNA polymerase II subunit RPB7 [Entamoeba dispar
SAW760]
gi|165899670|gb|EDR26214.1| DNA-directed RNA polymerase II subunit RPB7, putative [Entamoeba
dispar SAW760]
Length = 180
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 62 RVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY 121
R+ E TG V+F V F I KI R EV+DG + V K GV + G +NI++T SK+ D
Sbjct: 67 RIAEGTGNVVFSVKFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWKNIHVTASKVADC 126
Query: 122 RYVQ 125
YV+
Sbjct: 127 EYVE 130
>gi|345566807|gb|EGX49749.1| hypothetical protein AOL_s00078g238 [Arthrobotrys oligospora ATCC
24927]
Length = 169
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ +LL D + Y + V NI G++ +G F + + + +
Sbjct: 19 GPHMREYLINKLLTDVEGTCTGRY--YIICVLDAYNISMGKILPGSGLAEFTISYRAVVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPK-I 139
+ F+GE +DG V V K G F GP+ ++++ +P D ++ NP S+ + I
Sbjct: 77 RPFKGETVDGVVTAVSKLGFFANVGPLP-VFVSTHLIPADVKFDPTANPPQFSDNEGQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
EK VR+ ++GT+ + A+ S++ D+LG
Sbjct: 136 EKGAHVRLKLVGTR--SDVGKMSAIGSIKEDYLG 167
>gi|169602421|ref|XP_001794632.1| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
gi|160706165|gb|EAT87969.2| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
Length = 188
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NIGEGRVRENTGEVLFPVVFSGI 79
GP+++ I LL +++ G + V L+ +I +G+V +G + V + I
Sbjct: 19 GPLIRSHIHRELL----QKEEGSSTGKYTIVCILDAFDISDGKVLPGSGHAEYIVHYKAI 74
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVE-----NIYLTCS--KMPDYRYVQ------- 125
++ ++GEV+DG V VL+ G F+ CG ++ N+ + C+ + P Q
Sbjct: 75 VWRPYKGEVMDGVVTSVLRTGFFVDCGSLQAFVGRNVRMPCASCRYPSTNTTQMIPSDIT 134
Query: 126 ----AENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
A P + IEK +R+ + G + E ++ F A+ +++ D+LGP+
Sbjct: 135 FDANATPPQWTDNGEQVIEKGTNIRIKIKGLR-SEVDKMF-AVGTMKEDYLGPL 186
>gi|221054089|ref|XP_002261792.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808252|emb|CAQ38955.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi
strain H]
Length = 177
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ NV++ L GP Q+ + +L + + GY + V + +
Sbjct: 1 MYFVIEEWKNVIIKPSQL---GPRYQQ-FIEDMLRNSVEGQCNAKYGYIICVIRIIHCEP 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GRV++ T ++ V + I FK F+ EVLD V V K G F + GP++ I+++ + +P
Sbjct: 57 GRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKLGFFAQAGPLK-IFISRTAIPK 115
Query: 121 Y-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
Y Y + + S I+ VR+ + G ++ + F A+ ++ ++LG +
Sbjct: 116 YFEYSEDSHYPCFSSGVYNIKPQTTVRIKLQGIRY-DLSNMF-AIATINNEYLGCI 169
>gi|303276905|ref|XP_003057746.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460403|gb|EEH57697.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 174
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 47 GYFLAVTTLENIGEGRVREN-TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKC 105
GY + VT + +I EG + ++ T F V +S I F+ F+ EVLD V +V K G F +
Sbjct: 43 GYIVMVTNIVHISEGMITDDGTARAKFHVKYSAIAFRPFKNEVLDCVVVQVTKFGFFAEA 102
Query: 106 GPVENIYLTCSKMPD---YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQ 162
GP++ ++++ +P+ + V V ++ + +I KD+ VRV V+G + E
Sbjct: 103 GPLK-LFVSNQLVPEEMVFESVDENAYVDKTDISHRIVKDIEVRVKVVGLRI--DHNEIF 159
Query: 163 ALVSLEGDFLGP 174
+ +++ +LGP
Sbjct: 160 CVATMKEPYLGP 171
>gi|406866054|gb|EKD19094.1| RNA polymerase Rpb7-like domain-containing protein [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 172
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 14/159 (8%)
Query: 25 LQRSIVVRLLDDFARRKATKDL-----GYFLAVTTLE--NIGEGRVRENTGEVLFPVVFS 77
L S R + + K KD+ G + +T ++ NI EGR+ +G F V +
Sbjct: 13 LHPSYFGRNMHELVTGKLLKDVEGTCTGRYFIITIMDTFNISEGRILPGSGLAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM-PDYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V V + G F GP+ I+++ + PD ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAIVTSVNQVGFFADAGPLP-IFVSAHLIPPDIKFDPNATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLG 173
+ IE VRV +IGT+ AE E A+ S++ D+LG
Sbjct: 132 DSVIEVGTHVRVKLIGTR---AEVGEMYAIASIKEDYLG 167
>gi|374629103|ref|ZP_09701488.1| DNA-directed RNA polymerase, subunit E' [Methanoplanus limicola DSM
2279]
gi|373907216|gb|EHQ35320.1| DNA-directed RNA polymerase, subunit E' [Methanoplanus limicola DSM
2279]
Length = 190
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARR---KATKDLGYFLAVTTLEN 57
M+ ++ L V VP + L G L+ IVV +D+ ++ KD+G F+AVT ++
Sbjct: 1 MYFRMTLEDKVRVPPDRL---GEDLE--IVV--MDELQKQLEGSIDKDIGIFIAVTEIKE 53
Query: 58 IGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSK 117
IGEG + + G V + V+F + ++ E+++G V + G F+ GP++ + L S+
Sbjct: 54 IGEGDIIPSDGAVYYSVIFDSVVMRLSMQEIIEGEVVETTSFGAFVSLGPIDAM-LHVSQ 112
Query: 118 MPD 120
+ D
Sbjct: 113 ISD 115
>gi|409721676|ref|ZP_11269840.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
gi|448724828|ref|ZP_21707333.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
gi|445785037|gb|EMA35833.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
Length = 191
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L + VP L + ++V LL D + +++G ++VT + +IG+
Sbjct: 1 MYKRVRLTDTIEVPPHLL----ADVSSTMVKHLLQDKLEGRLDEEVGSIVSVTEVHDIGD 56
Query: 61 GRV----RENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
GRV R + G V + F ITF EV+DG V +++ G F+ GP++ + L S
Sbjct: 57 GRVLPGRRGHEGSVYYEADFDAITFDPQMQEVIDGEVVEIVSFGAFVGIGPIDGL-LHVS 115
Query: 117 KMPDYRYVQAENPVFLSEK 135
++ D E L+ +
Sbjct: 116 QISDEYLAYDEEGQMLASR 134
>gi|448737484|ref|ZP_21719524.1| DNA-directed RNA polymerase subunit E' [Halococcus thailandensis
JCM 13552]
gi|445803628|gb|EMA53911.1| DNA-directed RNA polymerase subunit E' [Halococcus thailandensis
JCM 13552]
Length = 167
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRV----RENTGEVLFPVVFSGITFKIF 84
+V RLL D + +++G ++VT + +IG+GRV R++ G V + F +TF
Sbjct: 1 MVKRLLQDKLEGRLDEEVGSIVSVTEVHDIGDGRVPPGRRDHEGSVYYEAEFDAVTFDPQ 60
Query: 85 RGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEK 135
EV+DG V +++ G F+ GP++ + L S++ D E+ L+ +
Sbjct: 61 MQEVIDGEVVEIVNFGAFVGIGPIDGL-LHVSQISDEYLAYDEDGQMLASR 110
>gi|403220608|dbj|BAM38741.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 180
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP Q++I +L D T GY + V + + GRV++ T ++ V + I F
Sbjct: 19 GPNYQQNIE-EMLRDQVEGHCTAKYGYVVCVIRIVHNDMGRVQDGTAMIVVNVKYQAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
K F+ EVLD V V K G F + GP++ S P++ Y ++ I
Sbjct: 78 KPFKDEVLDAIVTDVNKLGFFAQAGPLKAFVSRNSIHPNFVYDNDGAYPCYTDGTINIRA 137
Query: 142 DVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
VR+ + G K+ A A+ ++ D LG ++
Sbjct: 138 QSEVRMRLQGIKYDNA--NMFAIATINADHLGAFESDS 173
>gi|223479016|ref|YP_002582922.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
gi|214034242|gb|EEB75068.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
Length = 186
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LAV +E + EG + G VVF+ + ++ F EV++G V V +G F+
Sbjct: 40 RDEGVVLAVLDVEEVSEGVIVPGDGATYHEVVFNVLVWQPFMHEVVEGEVIDVAPYGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK---DVVVRVIVIGTK 153
+ GP++ + M DY +N FL ++ +I K +V RVI I K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILKLGDEVRARVIAISVK 152
>gi|240102556|ref|YP_002958865.1| DNA-directed RNA polymerase subunit E' [Thermococcus gammatolerans
EJ3]
gi|239910110|gb|ACS33001.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Thermococcus
gammatolerans EJ3]
Length = 186
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LAV +E + EG + G VVF+ + ++ F EV++G V V +G F+
Sbjct: 40 RDEGVVLAVLDVEEVSEGVIVPGDGATYHEVVFNVLVWQPFMHEVVEGEVIDVAPYGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK---DVVVRVIVIGTK 153
+ GP++ + M DY +N FL ++ +I K +V RVI I K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILKLGDEVRARVIAISVK 152
>gi|322697943|gb|EFY89717.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
acridum CQMa 102]
Length = 174
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +++ +I EGR+ G F V + + ++ F+GE +D V+ + G F + GP
Sbjct: 43 YIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGP 102
Query: 108 VENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
+ ++++ +P D ++ A P F + ++ IE VRV +IGT+ E A+
Sbjct: 103 LR-LFVSAHLIPSDIKWDPNATPPQFTNNEDTVIEPGTHVRVKIIGTR--TEVGEMWAIG 159
Query: 166 SLEGDFLG 173
S++ D+LG
Sbjct: 160 SIKEDYLG 167
>gi|346979502|gb|EGY22954.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium dahliae
VdLs.17]
Length = 171
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 25 LQRSIVVRLLDDFARRKATKDL-----GYFLAVTTLE--NIGEGRVRENTGEVLFPVVFS 77
L S R + D K KD+ G + ++ ++ +I EG++ +G F V +
Sbjct: 13 LHPSYFGRNMHDLVTSKLLKDVEGTFAGSYYVISIMDTFDISEGKILPGSGLAEFNVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V+ V G F + GP+ ++++ +P + ++ A P F
Sbjct: 73 AVVWRPFKGETVDAVVYSVNHQGFFAQAGPLR-LFVSAHLIPSEIKWDPNATPPQFTDND 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLG 173
+ IE VRV VIGT+ AE E A+ S++ D+LG
Sbjct: 132 DTIIEPGTHVRVKVIGTR---AEVSEMWAIGSIKEDYLG 167
>gi|451849958|gb|EMD63261.1| hypothetical protein COCSADRAFT_38126 [Cochliobolus sativus ND90Pr]
gi|452001764|gb|EMD94223.1| hypothetical protein COCHEDRAFT_1202004 [Cochliobolus
heterostrophus C5]
Length = 171
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NIGEGRVRENTGEVLFPVVFSGI 79
GP++++ I LL +++ G + V L+ +I +G+V +G + V + +
Sbjct: 19 GPLIRQHIHRELL----QKEEGSSTGKYTIVCILDSFDISDGKVMPGSGSAEYVVHYKAV 74
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNP 137
++ ++GEV+DG V VL+ G F+ CG ++ ++ S +P + ++ A P + +
Sbjct: 75 VWRPYKGEVMDGIVTSVLRTGFFVDCGSLQA-FVGRSMIPAEIKFDANATPPQWTDDGEQ 133
Query: 138 KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
IEK +R+ + G + E ++ + A+ +++ D+LGP+
Sbjct: 134 VIEKGTNIRIKIKGLR-SEVDKMY-AVGTMKEDYLGPL 169
>gi|389582746|dbj|GAB65483.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 177
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ NV++ L GP Q+ + +L + + GY + V + +
Sbjct: 1 MYFVIEEWKNVIIKPSQL---GPRYQQ-FIEDMLRNSVEGQCNAKYGYIICVIRIIHSEP 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GRV++ T ++ V + I FK F+ EVLD V V K G F + GP++ I+++ + +P
Sbjct: 57 GRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKLGFFAQAGPLK-IFISRTAIPK 115
Query: 121 Y-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
Y Y + + S I+ VR+ + G ++ + F A+ ++ ++LG +
Sbjct: 116 YFEYSEDSHYPCFSSGVYNIKPQTTVRIKLQGIRY-DLSNMF-AIATINNEYLGCI 169
>gi|310790921|gb|EFQ26454.1| RNA polymerase Rpb7-like domain-containing protein [Glomerella
graminicola M1.001]
gi|380484883|emb|CCF39716.1| DNA-directed RNA polymerase II subunit RPB7 [Colletotrichum
higginsianum]
gi|429860547|gb|ELA35279.1| RNA polymerase ii subunit 7 [Colletotrichum gloeosporioides Nara
gc5]
Length = 171
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP 107
Y +++ +I EGR+ +G F V + + ++ F+GE +D V+ V G F + GP
Sbjct: 43 YIISIMDTFDISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGP 102
Query: 108 VENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV 165
+ ++++ +P + ++ A P F + ++ IE VRV VIGT+ E A+
Sbjct: 103 LR-LFVSAHLIPSEIKWDPNATPPQFTNNEDTIIEPGTHVRVKVIGTR--TEVGEMWAIG 159
Query: 166 SLEGDFLG 173
S++ D+LG
Sbjct: 160 SIKEDYLG 167
>gi|302414828|ref|XP_003005246.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
gi|261356315|gb|EEY18743.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
Length = 177
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 25 LQRSIVVRLLDDFARRKATKDL-----GYFLAVTTLE--NIGEGRVRENTGEVLFPVVFS 77
L S R + D K KD+ G + ++ ++ +I EG++ +G F V +
Sbjct: 13 LHPSYFGRNMHDLVTSKLLKDVEGTFAGSYYVISIMDTFDISEGKILPGSGLAEFNVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V+ V G F + GP+ ++++ +P + ++ A P F
Sbjct: 73 AVVWRPFKGETVDAVVYSVNHQGFFAQAGPLR-LFVSAHLIPSEIKWDPNATPPQFTDND 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLG 173
+ IE VRV VIGT+ AE E A+ S++ D+LG
Sbjct: 132 DTIIEPGTHVRVKVIGTR---AEVSEMWAIGSIKEDYLG 167
>gi|363752353|ref|XP_003646393.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890028|gb|AET39576.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
Length = 171
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP ++ + +LL + T GY L V ENI
Sbjct: 1 MFFFKDLSLNITLHPSYF---GPRMREYLKTKLLQE-VEGTCTGKFGYILCVLDCENIEI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + +K F+GEV+DG V G + GP+ +++++ M
Sbjct: 57 ERGRILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPL-SVFVSPFLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
P D + NP I K VR+ ++G + A+ S++ D+LG
Sbjct: 116 PDDLTFNSGSNPPSYQSSEQIITKGSRVRLKIVGAR--SEVNSIYAIGSIKEDYLG 169
>gi|15668573|ref|NP_247371.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
jannaschii DSM 2661]
gi|2500642|sp|Q57840.1|RPOE1_METJA RecName: Full=DNA-directed RNA polymerase subunit E'
gi|17943304|pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|17943306|pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|1591102|gb|AAB98387.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Methanocaldococcus
jannaschii DSM 2661]
Length = 187
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +++ V VP E G L+ ++ L++ + R KD+G+ L++ +++IGE
Sbjct: 1 MYKILEIADVVKVPPEEF---GKDLKETVKKILMEKYEGR-LDKDVGFVLSIVDVKDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G PVVF + + E+++G V V++ G F++ GP++ + M D
Sbjct: 57 GKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDD 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIVIGTKWLEAEREFQALVSL 167
Y + + ++ K I V R++ I L+AER+ + ++L
Sbjct: 117 YVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS---LKAERKRGSKIAL 163
>gi|238483091|ref|XP_002372784.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
gi|317139645|ref|XP_001817663.2| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus oryzae
RIB40]
gi|220700834|gb|EED57172.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
Length = 191
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV ++G+ + + + I +
Sbjct: 19 GPNVREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
EK +R+ ++G K A A+ +++ D+LG V+
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLGYVA 170
>gi|295665476|ref|XP_002793289.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278203|gb|EEH33769.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 202
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGRV +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGVCTGDY-YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + IE
Sbjct: 77 KPFKGETVDAVVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCENP 180
K +R+ +IG + R A+ S++ D+LG V C +P
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLGCV-CYSP 173
>gi|119484588|ref|XP_001262073.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
gi|119410229|gb|EAW20176.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
Length = 167
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV +G+ + + + I +
Sbjct: 19 GPNMREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
EK +R+ ++G K A A+ +++ D+LG
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLG 167
>gi|145253060|ref|XP_001398043.1| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus niger CBS
513.88]
gi|134083601|emb|CAL00516.1| unnamed protein product [Aspergillus niger]
gi|350633119|gb|EHA21485.1| DNA-directed RNA polymerase II [Aspergillus niger ATCC 1015]
gi|358372658|dbj|GAA89260.1| RNA polymerase II subunit 7 [Aspergillus kawachii IFO 4308]
Length = 167
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV +G+ + + + I +
Sbjct: 19 GPNMREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
EK +R+ ++G K A A+ +++ D+LG
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLG 167
>gi|288932566|ref|YP_003436626.1| DNA-directed RNA polymerase [Ferroglobus placidus DSM 10642]
gi|288894814|gb|ADC66351.1| DNA-directed RNA polymerase [Ferroglobus placidus DSM 10642]
Length = 188
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +VK+ V VP L G ++ I L + F K ++ G + + ++E IGE
Sbjct: 1 MYARVKIRDTVRVPPNRL---GEDMEEVINELLWEQF-EGKLDREYGMIVGIESIEEIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ E G V F V+F+ ITFK EV++G V ++++ G F+ GP++ + M D
Sbjct: 57 GRIIEGDGGVYFDVIFNAITFKPLLQEVVEGEVVEIVEFGAFVSIGPMDGLLHMSQIMDD 116
Query: 121 YRYVQAENPVFLSEKNPK-IEKDVVVRVIVI 150
Y +N + ++ + +E+ VRV ++
Sbjct: 117 YIVYDEKNKRLVGKETKRSLEEGDAVRVRIV 147
>gi|397780584|ref|YP_006545057.1| DNA-directed RNA polymerase subunit E' [Methanoculleus bourgensis
MS2]
gi|396939086|emb|CCJ36341.1| DNA-directed RNA polymerase subunit E' [Methanoculleus bourgensis
MS2]
Length = 189
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 1 MFLKVKLPWNVVVP----AENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE 56
M+ K+ L V VP E+LDA +++ +L + K++G F+AVT +
Sbjct: 1 MYFKMTLEDKVRVPPHRLGEDLDA--------VILNVLQEQLEGSIAKEIGIFIAVTKVL 52
Query: 57 NIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
+IGEG + G V + V F + ++ EV++G V + G F+ GP++ + L S
Sbjct: 53 DIGEGELIPGDGAVYYDVRFEAVVLRLALQEVIEGEVVETTSFGAFISLGPIDAM-LHVS 111
Query: 117 KMPD 120
++ D
Sbjct: 112 QISD 115
>gi|289192398|ref|YP_003458339.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
gi|288938848|gb|ADC69603.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
Length = 187
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 11 VVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEV 70
V VP E G L+ ++ L++ + R KD+G+ L++ +++IG G+V G
Sbjct: 11 VKVPPEEF---GKDLKETVKKILMEKYEGR-LDKDIGFILSIVDVKDIGNGKVVHGDGSA 66
Query: 71 LFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDY-RYVQAENP 129
PVVF + + E+++G V V++ G F++ GP++ + M DY Y
Sbjct: 67 YHPVVFETLVYMPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREA 126
Query: 130 VFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSL 167
+ E +E VR ++ L+AER+ + ++L
Sbjct: 127 IIGKETGKVLEIGDYVRARIVAIS-LKAERKRGSKIAL 163
>gi|449297101|gb|EMC93119.1| hypothetical protein BAUCODRAFT_228826 [Baudoinia compniacensis
UAMH 10762]
Length = 171
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 35 DDFARRKATKDLGYFL--AVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGT 92
+ R + K+ G L A+ +E++ E +V +G + V F I ++ FRGEV+DG
Sbjct: 28 EQLYREQEGKNTGTMLIIAIIDIEDVSEPKVVPGSGLAQYDVSFRAIVWRPFRGEVVDGL 87
Query: 93 VHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIG 151
V V+ G F+ G + P ++ V+ P + + IE+ VR+ +
Sbjct: 88 VSSVISGGFFVDVGGLAVFVSKALIPPQLKFSVEGSAPSYTDNVDQTIERGTQVRLRI-- 145
Query: 152 TKWLEAER-EFQALVSLEGDFLGPV 175
K + AE + A+ S+ D+LGP+
Sbjct: 146 -KGIRAEMGQMYAIGSIREDYLGPL 169
>gi|390960923|ref|YP_006424757.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
gi|390519231|gb|AFL94963.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
Length = 185
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LAV +E IG+G + G VVF+ + +K EV+DG V V +G F+
Sbjct: 40 RDEGVVLAVMDVEEIGQGVIVPGDGATYHEVVFNVLVWKPEMHEVVDGEVIDVAPYGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK---DVVVRVIVIGTK 153
+ GP++ + M DY +N F+ ++ +I K + R+I I K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNKQFIGKETNRILKLGDEARARIIAISIK 152
>gi|298710882|emb|CBJ26391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 177
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL--ENI 58
MF +L ++VP + GP L+ +I +L+++ + LG+ + VT + + I
Sbjct: 1 MFYLKELRRPMLVPPSDF---GPKLKDTIRRKLIEE-VEGTSVGSLGFVITVTNVSDDQI 56
Query: 59 GEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
G + +TG VV+ I F+ F EVLD V V + G F + GP+E ++++ M
Sbjct: 57 QMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLE-VFVSRLGM 115
Query: 119 PDYRYVQAENP-----VFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
PD +P V + + +I+ VR+ +IG + E +A+ S++ DFLG
Sbjct: 116 PD-DIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIG---VTVGAELKAVGSIKDDFLG 171
Query: 174 PVS 176
VS
Sbjct: 172 LVS 174
>gi|239607718|gb|EEQ84705.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ER-3]
gi|327355593|gb|EGE84450.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ATCC 18188]
Length = 169
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGRV +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGVCTGDY-YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + IE
Sbjct: 77 KPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
K +R+ +IG + R A+ S++ D+LG V
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLGSV 169
>gi|45198920|ref|NP_985949.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|44984949|gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|374109179|gb|AEY98085.1| FAFR402Cp [Ashbya gossypii FDAG1]
Length = 171
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP ++ + +LL + T GY L V ENI
Sbjct: 1 MFFFKDLSLNITLHPSYF---GPRMREYLKTKLLQE-VEGTCTGKFGYILCVLDSENIEI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + +K F+GEV+DG V G + GP+ +++++ M
Sbjct: 57 ERGRILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPL-SVFVSPFLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
P D + NP I K VR+ ++G + A+ S++ D+LG
Sbjct: 116 PEDLTFNSGSNPPSYQSSEQIITKGSRVRLKIVGAR--SEVNSIYAIGSIKEDYLG 169
>gi|296805993|ref|XP_002843816.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
gi|238845118|gb|EEQ34780.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
Length = 169
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V + +I EG++ +G + +V+ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGVCTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + + IE
Sbjct: 77 KPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNADQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
K +R+ +IG + R A+ S+ D+LG
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIREDYLG 167
>gi|399950026|gb|AFP65682.1| RNA polymerase II RPB7 subunit-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 174
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 12/177 (6%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL-ENIG 59
M+ L N+ V + + K +++S+V LL KA G + +T + +N G
Sbjct: 1 MYFLCTLNQNLYVSPKLFNKK---IKKSLVGNLLSSVEGTKAG-PFGLIIMITEIFDNWG 56
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
EG+ L+ + + +TF+ F+GEV D V +V G F + G ++ I+++ ++P
Sbjct: 57 EGKFLIGCPSALYCLTYKALTFRAFKGEVFDAVVTQVTNLGFFSEAGFLQ-IFVSKKQIP 115
Query: 120 D-YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAEREF-QALVSLEGDFLG 173
++Y Q + F E+ I + +RV V+ K E F QAL S++G LG
Sbjct: 116 IFFKYNQNKRTFFNQLEQKESISTNSTIRVRVVSIK---EESSFNQALGSIKGKKLG 169
>gi|440294233|gb|ELP87250.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Entamoeba invadens IP1]
Length = 158
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 32 RLLDDFARRKATKDLGYFLAVTTLENIGEG---RVRENTGEVLFPVVFSGITFKIFRGEV 88
R +DD +K + Y +V + + + R+ E TG V+F V + I K+ EV
Sbjct: 14 RYIDDIINQKTGYNKDYECSVICVTRVIDRKPLRIAEGTGNVVFSVKYEAIVQKLINKEV 73
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP 137
+DG + V GV + G +NI+++ K+ D ++ +A N ++KN
Sbjct: 74 VDGVISNVSNDGVIVDAGAWKNIHVSFKKVADCQFDEANNCYVDTDKNS 122
>gi|340517390|gb|EGR47634.1| predicted protein [Trichoderma reesei QM6a]
Length = 170
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDLG-------YFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
L S R + + K KD+ Y +++ +I EG++ G F V +
Sbjct: 13 LHPSYFGRNMHELVTSKLLKDVEGTCAGSYYIISIMDTFDISEGKILPGNGLAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V+ + G F + GP+ ++++ +P D ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDIKWDPNATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV +IGT+ E A+ S++ D+LG
Sbjct: 132 DTVIEPGTHVRVKIIGTR--TEVGEMWAIGSIKEDYLG 167
>gi|330508866|ref|YP_004385294.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
gi|328929674|gb|AEB69476.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
Length = 194
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 6/184 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+KL + ++L G L+ + V R L D K LG +AV ++IGE
Sbjct: 1 MYKKMKLKGVARIEPDHL---GDPLE-AAVERALRDKYEGVVDKSLGTIVAVLGADDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G + + V F + FK E+++G V +++K G FL GP + + +
Sbjct: 57 GHILAGDGSIYYEVNFDTLVFKPEMQEIIEGEVVEIVKFGAFLSLGPFDGLLHVSQITNE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTKWLEAE-REFQALVSLEGDFLGPVSCE 178
Y +N +S E N + + VR VI E E RE + +++ LG +
Sbjct: 117 YISYDEKNARLVSKESNKSLGEGDRVRARVIAVSLNEKEPRESKIGLTMRQTGLGKLEWL 176
Query: 179 NPLD 182
+ D
Sbjct: 177 DAAD 180
>gi|156082005|ref|XP_001608495.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148801066|gb|EDL42471.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 177
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ NV++ L GP Q+ + +L + + GY + V + +
Sbjct: 1 MYFVIEEWKNVIIKPSQL---GPRYQQ-FIEDMLRNSVEGQCNAKYGYIICVIRIIHSEP 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GRV++ T ++ V + I FK F+ EVLD V V K G F + GP++ I+++ + +P
Sbjct: 57 GRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTDVNKLGFFAQAGPLK-IFISRTAIPK 115
Query: 121 -YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+ Y + + S I+ VR+ + G ++ + F A+ ++ ++LG +
Sbjct: 116 FFEYSEDSHYPCFSSGVHNIKPQTTVRIKLQGIRY-DLSNMF-AIATINSEYLGCI 169
>gi|119188519|ref|XP_001244866.1| hypothetical protein CIMG_04307 [Coccidioides immitis RS]
Length = 180
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGR+ +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGICTGDY-YIVCVMDTYDISEGRIIPGSGMAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + + IE
Sbjct: 77 KPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNADQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
K +R+ +IG + R A+ S++ D+LG
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLG 167
>gi|313125280|ref|YP_004035544.1| DNA-directed RNA polymerase subunit e' [Halogeometricum borinquense
DSM 11551]
gi|448287123|ref|ZP_21478339.1| DNA-directed RNA polymerase subunit E' [Halogeometricum borinquense
DSM 11551]
gi|312291645|gb|ADQ66105.1| DNA-directed RNA polymerase, subunit E' [Halogeometricum
borinquense DSM 11551]
gi|445572869|gb|ELY27399.1| DNA-directed RNA polymerase subunit E' [Halogeometricum borinquense
DSM 11551]
Length = 192
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E+L P QR V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEHLADVTP--QR--VKRLLQDKLEGRMDEDVGSVVSVVNVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V V + F +TF EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPGRAGVYYEAEFDAVTFDPDMQEVIDGEVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + VRV V+
Sbjct: 117 YLAYDGENQQLASTESNRTLAVGDSVRVRVV 147
>gi|126180182|ref|YP_001048147.1| DNA-directed RNA polymerase subunit E' [Methanoculleus marisnigri
JR1]
gi|125862976|gb|ABN58165.1| DNA-directed RNA polymerase, subunit E' [Methanoculleus marisnigri
JR1]
Length = 188
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+ L V VP L G L++ +++ +L + K++G F+AVT + N+GE
Sbjct: 1 MYYKMTLEDKVRVPPHRL---GEDLEK-VILNVLQEQLEGSIAKEIGIFIAVTNILNVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F ++ EV++G V + G F+ GP++ + L S++ D
Sbjct: 57 GELIPGDGAVYYDVRFEAAVLRLALQEVIEGQVVETTSFGAFVSLGPIDAM-LHVSQISD 115
Query: 121 YRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151
Y+ + EKN ++ R I +G
Sbjct: 116 -EYINYD------EKNGRLVCQDSKRAITVG 139
>gi|303323777|ref|XP_003071880.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240111582|gb|EER29735.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320031834|gb|EFW13792.1| RNA polymerase II subunit 7 [Coccidioides posadasii str. Silveira]
gi|392867774|gb|EAS33470.2| RNA polymerase II subunit 7 [Coccidioides immitis RS]
Length = 169
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGR+ +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGICTGDY-YIVCVMDTYDISEGRIIPGSGMAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + + IE
Sbjct: 77 KPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNADQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
K +R+ +IG + R A+ S++ D+LG
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLG 167
>gi|255931335|ref|XP_002557224.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581843|emb|CAP79966.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 167
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV G+ + + + I +
Sbjct: 19 GPNMREYLIGRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
EK +R+ ++G K A A+ +++ D+LG
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLG 167
>gi|389641835|ref|XP_003718550.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|351641103|gb|EHA48966.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|440469750|gb|ELQ38847.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
Y34]
gi|440482256|gb|ELQ62763.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
P131]
Length = 172
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G + +V RLL D D Y ++V +I G++ F V + + +
Sbjct: 19 GKNMHEIVVQRLLAD-TEGTCQGDF-YIISVMDAVDISPGKIVPGNAMAEFTVNYRAVVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
+ F+G+ +DG V V +HG F+ GP+ PD Y A PVF + ++
Sbjct: 77 RPFKGQTVDGIVDSVNQHGFFIAVGPLRVFITKQMCPPDVIYDANASPPVFTDKDTWLVD 136
Query: 141 KDVVVRVIVIGTKWLEAERE-FQALVSLEGDFLGPV 175
+ R +IG L +E + A+ ++ DFLGP+
Sbjct: 137 VGTLCRARIIG---LRSEVDTMWAIGTVNEDFLGPL 169
>gi|288560738|ref|YP_003424224.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
gi|288543448|gb|ADC47332.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
Length = 189
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
+ + L++ + K+LG + VT++E +GEG + G V+F+ I FK + EV
Sbjct: 22 VAIETLNESYNGQLDKNLGLIVGVTSIEEMGEGVLIMGDGAAYHNVIFNAIFFKPEQQEV 81
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI 139
++G V + + G F++ GP++ + DY N +++++ KI
Sbjct: 82 VEGEVIDIAEFGAFVRIGPMDGLVHVSQVTDDYINYDPRNASLIAKESKKI 132
>gi|320166538|gb|EFW43437.1| RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864]
Length = 176
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 12/182 (6%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL--ENI 58
MF + L +V+ + GP L+++++ +L + + G+ +A+T+L E++
Sbjct: 1 MFFYMTLDKEIVLHPKYF---GPRLRQALMEKLYTE-VEGTCDGERGFIVAITSLSEEHL 56
Query: 59 GEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
G GR+ G V + V + + F+ +GEV+D V V K G F + GP+ M
Sbjct: 57 GRGRLMAGKGLVSYHVQYQAVVFRPVKGEVMDAIVTVVNKMGFFAEAGPISIFVSQVGGM 116
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVV---VRVIVIGTKWLEAEREFQALVSLEGDFLGP 174
P +Y + NP + I V VR+ + G + ++AE + +++ D+LG
Sbjct: 117 PSEYSFDVTSNPPCFKSADMTIGAITVGSQVRLRIAGMR-IDAE-SITTVGTIKDDYLGF 174
Query: 175 VS 176
++
Sbjct: 175 IA 176
>gi|374635070|ref|ZP_09706675.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373563472|gb|EHP89666.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 187
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD+G+ L++ L+ IGEG+V G PVVF + + EV++G + +++ G F+
Sbjct: 40 KDIGFILSIVDLKEIGEGKVIHGDGAAYHPVVFDTLIYVPELHEVVEGEIVDIVEFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDY 121
+ GP++ + M DY
Sbjct: 100 RLGPLDGLIHISQIMDDY 117
>gi|115396608|ref|XP_001213943.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193512|gb|EAU35212.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 174
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV ++G + + + I +
Sbjct: 19 GPNVREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPSSGHAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ +++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPLA-VFIARKNIPSDIKWEPNTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
EK +R+ ++G K A A+ +++ D+LG
Sbjct: 136 EKGTSLRLKILGVKPDVA--AINAIGTIKEDYLG 167
>gi|15790905|ref|NP_280729.1| DNA-directed RNA polymerase subunit E' [Halobacterium sp. NRC-1]
gi|169236650|ref|YP_001689850.1| DNA-directed RNA polymerase subunit E' [Halobacterium salinarum R1]
gi|10581476|gb|AAG20209.1| DNA-directed RNA polymerase subunit E' [Halobacterium sp. NRC-1]
gi|167727716|emb|CAP14504.1| DNA-directed RNA polymerase subunit E [Halobacterium salinarum R1]
Length = 190
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 30/195 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ + +L + VP E L A GP L V RLL D + +D+G + VT + ++GE
Sbjct: 1 MYKRARLKDTIEVPPEYLGAVGPDL----VKRLLQDKLEGRMDEDVGSIVTVTEVHDLGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF+ EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVLPNRPGVYYEAEFDAVTFEPEMQEVVDGEVVEVVSFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + +G WL
Sbjct: 117 YLAFDEENQQLASRESNQVLGTGDSVRARIVTKSIDERNPRESKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
+A+RE QA + EG+
Sbjct: 177 QADRE-QADAASEGE 190
>gi|212225065|ref|YP_002308301.1| DNA-directed RNA polymerase subunit E' [Thermococcus onnurineus
NA1]
gi|212010022|gb|ACJ17404.1| DNA-directed RNA polymerase, subunit E' [Thermococcus onnurineus
NA1]
Length = 188
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LAV +E I +G V G VVF + +K EV++G V V +G F+
Sbjct: 40 RDEGVILAVMDVEEISQGVVVPGDGATYHEVVFDVLVWKPEMHEVVEGEVIDVAPYGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK---DVVVRVIVIGTK 153
+ GP++ + M DY +N FL ++ +I K +V R+I I K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRILKLGDEVKARIIAISIK 152
>gi|355571472|ref|ZP_09042724.1| DNA-directed RNA polymerase [Methanolinea tarda NOBI-1]
gi|354825860|gb|EHF10082.1| DNA-directed RNA polymerase [Methanolinea tarda NOBI-1]
Length = 196
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 31/184 (16%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+++ V VP + G L R +++ +L + K++G F+AVT + IGE
Sbjct: 1 MYYKMEMSDKVRVPPHRM---GEELSR-VILDVLQEHLEGSIDKEIGIFIAVTRVITIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G + + V F + ++ EV++G V + G F+ GP++ + L S++ D
Sbjct: 57 GEIVPGDGAIYYDVDFEAVVLRLSLQEVIEGLVVETTSFGAFVSLGPIDAM-LHVSQISD 115
Query: 121 -----------------YRYVQAENPV-------FLSEKNPKIEK-DVVVRVIVIGT-KW 154
R++ PV L+E+ P+ K + +R +GT +W
Sbjct: 116 EYINYDEKNARLICQDSKRFIGVGEPVRVRVVTLSLNEREPRDSKIGLTMRQAGLGTARW 175
Query: 155 LEAE 158
LE +
Sbjct: 176 LEED 179
>gi|429328615|gb|AFZ80375.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Babesia
equi]
Length = 175
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP Q++I +L D T GY + V + + GRV++ T ++ V + I F
Sbjct: 19 GPNYQQNIE-EMLRDQVEGHCTAKYGYVVCVIRIVHNEIGRVQDGTAMIVVNVKYQAIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQ-AENPVFLSEKNPKIE 140
K F+ EVLD V V K G F + GP++ S P++ Y A P + S+ I+
Sbjct: 78 KPFKDEVLDAIVTDVNKLGFFAQAGPLKVFVSRTSIDPNFVYDNDAAYPCY-SDGTISIK 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
VR+ + G + E F A+ ++ D LG
Sbjct: 137 PQSEVRMRIQGISY-ENSNIF-AVATINADHLG 167
>gi|154283689|ref|XP_001542640.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|150410820|gb|EDN06208.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|225561964|gb|EEH10244.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus G186AR]
gi|240275577|gb|EER39091.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H143]
gi|325091406|gb|EGC44716.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H88]
Length = 169
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGRV +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGVCTGDY-YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + IE
Sbjct: 77 KPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
K +R+ +IG + R A+ S++ D+LG
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLG 167
>gi|448426344|ref|ZP_21583290.1| DNA-directed RNA polymerase subunit E' [Halorubrum terrestre JCM
10247]
gi|448452225|ref|ZP_21593208.1| DNA-directed RNA polymerase subunit E' [Halorubrum litoreum JCM
13561]
gi|448484472|ref|ZP_21606105.1| DNA-directed RNA polymerase subunit E' [Halorubrum arcis JCM 13916]
gi|448508407|ref|ZP_21615513.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
9100]
gi|448518030|ref|ZP_21617329.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
10118]
gi|445679835|gb|ELZ32295.1| DNA-directed RNA polymerase subunit E' [Halorubrum terrestre JCM
10247]
gi|445697473|gb|ELZ49537.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
9100]
gi|445705566|gb|ELZ57460.1| DNA-directed RNA polymerase subunit E' [Halorubrum distributum JCM
10118]
gi|445809492|gb|EMA59533.1| DNA-directed RNA polymerase subunit E' [Halorubrum litoreum JCM
13561]
gi|445819974|gb|EMA69806.1| DNA-directed RNA polymerase subunit E' [Halorubrum arcis JCM 13916]
Length = 191
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP ++L + V LL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPKHL----ADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV DGTV + ++ G F+ GPV+ + +
Sbjct: 57 GAVLHNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGT-KWL 155
Y N S E+NP+ K + + +G +WL
Sbjct: 117 YLTFDGANQQLASSDSDKTLGVDDAVRVRVVTKSIDERNPRDSKIGLTAKQPGLGKHEWL 176
Query: 156 EAEREFQALVSLEGD 170
E +R+ + E D
Sbjct: 177 EGQRKHREQTGEEAD 191
>gi|448436590|ref|ZP_21587170.1| DNA-directed RNA polymerase subunit E' [Halorubrum tebenquichense
DSM 14210]
gi|448503642|ref|ZP_21613271.1| DNA-directed RNA polymerase subunit E' [Halorubrum coriense DSM
10284]
gi|448535645|ref|ZP_21622165.1| DNA-directed RNA polymerase subunit E' [Halorubrum hochstenium ATCC
700873]
gi|445682371|gb|ELZ34789.1| DNA-directed RNA polymerase subunit E' [Halorubrum tebenquichense
DSM 14210]
gi|445691843|gb|ELZ44026.1| DNA-directed RNA polymerase subunit E' [Halorubrum coriense DSM
10284]
gi|445703146|gb|ELZ55081.1| DNA-directed RNA polymerase subunit E' [Halorubrum hochstenium ATCC
700873]
Length = 191
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP ++L + V LL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPKHL----ADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV DGTV + ++ G F+ GPV+ + +
Sbjct: 57 GAVLHNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLSEKNPK 138
Y N S + K
Sbjct: 117 YLTFDGANQQLASSDSDK 134
>gi|395852612|ref|XP_003798829.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Otolemur
garnettii]
Length = 170
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLK 98
G ++ G VL+PV + I F+ F+GEV+D V +V K
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNK 94
>gi|387594745|gb|EIJ89769.1| hypothetical protein NEQG_00539 [Nematocida parisii ERTm3]
gi|387596407|gb|EIJ94028.1| hypothetical protein NEPG_00693 [Nematocida parisii ERTm1]
Length = 170
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ ++ RL+ + K D GY +++ +++N+ V +G F +S +T
Sbjct: 19 GKKIEETVRKRLMSE-VEGKCKADCGYIISIISIDNLYTTEVDSTSGSATFLAEYSALTL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIE 140
+ EV + VH++ K G+F GP +++++ ++ + A + + + I
Sbjct: 78 FPKKNEVANAVVHEINKMGIFCFIGPF-SVFISIHQLSGQFIEAGAHSSIIQHDGGSVIV 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
KD +VR+ +IG K +E + F + ++ D+LG +
Sbjct: 137 KDSIVRLRLIGVK-IEPTKIF-GVATINDDYLGNI 169
>gi|225679312|gb|EEH17596.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb03]
Length = 195
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGRV +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGVCTGDY-YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + IE
Sbjct: 77 KPFKGETVDAVVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCENPL 181
K +R+ +IG + R A+ S++ D+LG E PL
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLG---GEGPL 172
>gi|448489632|ref|ZP_21607728.1| DNA-directed RNA polymerase subunit E' [Halorubrum californiensis
DSM 19288]
gi|445694598|gb|ELZ46722.1| DNA-directed RNA polymerase subunit E' [Halorubrum californiensis
DSM 19288]
Length = 191
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP ++L + V LL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPKHL----ADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV DGTV + ++ G F+ GPV+ + +
Sbjct: 57 GAVLHNRPGVYYEAEFDALTYDPEMQEVADGTVVETVEFGAFVGIGPVDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLSEKNPK 138
Y N S + K
Sbjct: 117 YLTFDGANQQLASSDSDK 134
>gi|226291032|gb|EEH46460.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb18]
Length = 169
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGRV +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGVCTGDY-YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ A P + IE
Sbjct: 77 KPFKGETVDAVVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
K +R+ +IG + R A+ S++ D+LG
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLG 167
>gi|448304425|ref|ZP_21494363.1| DNA-directed RNA polymerase subunit E' [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590858|gb|ELY45070.1| DNA-directed RNA polymerase subunit E' [Natronorubrum
sulfidifaciens JCM 14089]
Length = 189
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +D+G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKRLLQDKLEGRMDEDVGSVVSVTDVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFL-SEKNPKIEKDVVVRVIVI 150
Y EN SE N + D VR ++
Sbjct: 117 YLAFDGENQQLASSESNQTLGVDDAVRARIV 147
>gi|156050367|ref|XP_001591145.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980]
gi|154692171|gb|EDN91909.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 167
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKD-------LGYFLAVTTLENIGEGRVRENTGEVLFPVVFS 77
L S R + + K KD L Y + + NI EGR+ +G F V +
Sbjct: 13 LHPSYFGRNMHELVTGKLLKDVEGTCTGLYYIITIMDTFNISEGRILPGSGLAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V V G F GP+ ++++ +P D ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAIVTSVNAVGFFADAGPLP-LFVSAHLIPRDIKFDANATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV +IGT+ E F A+ S++ D+LG
Sbjct: 132 DSVIEPGTHVRVKIIGTR-PEVGAMF-AIGSIKEDYLG 167
>gi|339252426|ref|XP_003371436.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
gi|316968324|gb|EFV52617.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
Length = 172
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +V++ GP L ++ +L+ + + G+ + VT + +IG
Sbjct: 1 MFFLMNLEHDVLLHPRYF---GPHLYNTVRQKLILE-VEGQCMGKYGFIITVTGILSIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G V+ G V FP+ + + ++ + EV++G V V K G+F GP+ ++++ +P
Sbjct: 57 GLVQSGCGFVRFPIKYQAVVYRPIKNEVVEGRVENVSKLGLFCLVGPL-TVFISRHCIPH 115
Query: 120 DYRYVQAENPVFLSEKNPKIEKDV--VVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
D + P+ ++ IE V +R+ ++GT+ ++A F A+ +L D+LG
Sbjct: 116 DLIFRPTAQPMSYCNEDESIEITVNMNLRLKILGTR-VDANNIF-AIGTLMDDYLG 169
>gi|242820484|ref|XP_002487519.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
gi|218713984|gb|EED13408.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
Length = 169
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ +V RL ++ R T D + + V + +IGEGRV +G + + + I +
Sbjct: 19 GPNVKEYLVNRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVIPGSGHAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAE-NPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPGTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
E+ +R+ ++G K A+ +++ D+LG
Sbjct: 136 ERGTSLRLKILGVK--PDVSAINAIGTIKEDYLG 167
>gi|154295091|ref|XP_001547983.1| hypothetical protein BC1G_13674 [Botryotinia fuckeliana B05.10]
gi|347831716|emb|CCD47413.1| similar to DNA-directed RNA polymerase II subunit rpb7 [Botryotinia
fuckeliana]
Length = 172
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 12/158 (7%)
Query: 25 LQRSIVVRLLDDFARRKATKDL-----GYFLAVTTLE--NIGEGRVRENTGEVLFPVVFS 77
L S R + + K KD+ G + +T ++ NI EGR+ +G F V +
Sbjct: 13 LHPSYFGRNMHELVTGKLLKDVEGTCTGLYYIITIMDTFNISEGRILPGSGLAEFTVGYR 72
Query: 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEK 135
+ ++ F+GE +D V V G F GP+ ++++ +P D ++ A P F + +
Sbjct: 73 AVVWRPFKGETVDAIVTSVNAVGFFADAGPLP-LFVSAHLIPRDIKFDANATPPQFTNNE 131
Query: 136 NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IE VRV +IGT+ E F A+ S++ D+LG
Sbjct: 132 DSVIEPGTHVRVKIIGTR-PEVGAMF-AIGSIKEDYLG 167
>gi|378756379|gb|EHY66403.1| hypothetical protein NERG_00043 [Nematocida sp. 1 ERTm2]
Length = 170
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ ++ RL+ + K + GY +++ +++N+ + TG F +S +T
Sbjct: 19 GKKIEETVRKRLVSE-VEGKCMAECGYIISIISIDNLYTTEIDSATGSGTFLAEYSALTL 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIE 140
+ EV + VH++ K GVF GP+ +++++ ++ + A + + + I
Sbjct: 78 FPKKNEVANAVVHEINKMGVFCYIGPL-SVFISIHQLSGQFIEAGAHSSIIQHDGGSAIV 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
KD +VR+ +IG K +E + F + ++ D+LG +
Sbjct: 137 KDSIVRLKLIGVK-IEPTKIF-GVATINDDYLGNI 169
>gi|448460022|ref|ZP_21596942.1| DNA-directed RNA polymerase subunit E' [Halorubrum lipolyticum DSM
21995]
gi|448463284|ref|ZP_21598062.1| DNA-directed RNA polymerase subunit E' [Halorubrum kocurii JCM
14978]
gi|445807740|gb|EMA57821.1| DNA-directed RNA polymerase subunit E' [Halorubrum lipolyticum DSM
21995]
gi|445817279|gb|EMA67155.1| DNA-directed RNA polymerase subunit E' [Halorubrum kocurii JCM
14978]
Length = 191
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP ++L + V LL D + +D+G ++V + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPKHL----ADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV DGTV + ++ G F+ GPV+ + +
Sbjct: 57 GAVLHNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGT-KWL 155
Y N S E+NP+ K + + +G +WL
Sbjct: 117 YLTFDGANQQLASSDSDKTLGVDDAVRVRVVTKSIDERNPRDSKIGLTAKQPGLGKHEWL 176
Query: 156 EAEREFQALVSLEGD 170
E +R+ + E D
Sbjct: 177 EGQRQHREQTGEEAD 191
>gi|398411600|ref|XP_003857138.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
gi|339477023|gb|EGP92114.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
Length = 167
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 50 LAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVE 109
+ + +E+I E +++ TG ++ + + I ++ FRGEV+DG V V+ +G F+ G +
Sbjct: 45 IRIVDVEDISEPKLQPGTGMAVYHLHYRAIVWRPFRGEVVDGLVSSVVNNGFFVDVGAL- 103
Query: 110 NIYLTCSKMPD-YRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSL 167
+++++ + +P +Y ++ P F ++ +E+ VR+ + G + A+ S+
Sbjct: 104 SVFVSKAMIPSTLKYTMEGSTPAFTDNQDQSVERGTQVRLRIKGIRGEMG--SMYAIGSI 161
Query: 168 EGDFLG 173
D+LG
Sbjct: 162 REDYLG 167
>gi|147919758|ref|YP_686496.1| DNA-directed RNA polymerase subunit E' [Methanocella arvoryzae
MRE50]
gi|110621892|emb|CAJ37170.1| DNA-directed RNA polymerase, subunit E [Methanocella arvoryzae
MRE50]
Length = 194
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ KV+L + +P + L+ L++ I L + R K LG +AVT + IGE
Sbjct: 1 MYRKVRLVDIIRIPPQRLEED---LEKVISETLREKLEGR-IDKTLGSIVAVTDVVEIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVE 109
G + G V + V F I +K + E+++G+V +++ G F+ GPV+
Sbjct: 57 GHILVGDGAVYYEVTFDAIAYKPEQQEIIEGSVVEIVAFGAFIAVGPVD 105
>gi|448475243|ref|ZP_21602961.1| DNA-directed RNA polymerase subunit E' [Halorubrum aidingense JCM
13560]
gi|445816714|gb|EMA66601.1| DNA-directed RNA polymerase subunit E' [Halorubrum aidingense JCM
13560]
Length = 191
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP ++L + V LL D + +D+G ++V + ++GE
Sbjct: 1 MYKRVRLKDTVEVPPKHL----ADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV DGTV + ++ G F+ GPV+ + +
Sbjct: 57 GAVLHNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLSEKNPK 138
Y N S + K
Sbjct: 117 YLTFDGANQQLASSDSDK 134
>gi|300706401|ref|XP_002995470.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
gi|239604588|gb|EEQ81799.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
Length = 155
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 26/159 (16%)
Query: 22 GPMLQRSIVVRLLDDFARRK---ATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSG 78
GP +Q L+ D+ + + D GY ++V ++++ EG V N G F + +
Sbjct: 19 GPKIQS-----LIKDYLYKTIEGSCNDSGYVISVLEIDDVSEGTVSLN-GATSFKIKYKA 72
Query: 79 ITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE-KNP 137
+ K F+GE ++ +V ++ K GVF GP+ ++++ ++P SE +
Sbjct: 73 LVLKPFKGETMEASVVEINKMGVFASVGPL-TVFVSNHQIP-------------SEIQEG 118
Query: 138 KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ KD +VR+ +IGTK + A+ +L ++LG +S
Sbjct: 119 GLLKDSIVRLKIIGTKI--DSSKIYAVGTLNDEYLGILS 155
>gi|448441290|ref|ZP_21589041.1| DNA-directed RNA polymerase subunit E' [Halorubrum saccharovorum
DSM 1137]
gi|445689173|gb|ELZ41414.1| DNA-directed RNA polymerase subunit E' [Halorubrum saccharovorum
DSM 1137]
Length = 191
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP ++L + V LL D + +D+G ++V + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPKHL----ADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV DGTV + ++ G F+ GPV+ + +
Sbjct: 57 GAVLHNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y N S E+NP+ K + + +G WL
Sbjct: 117 YLTFDGANQQLASSDSDKTLGVDDAVRVRVVTKSIDERNPRDSKIGLTAKQPGLGKHDWL 176
Query: 156 EAEREFQALVSLEGD 170
E +R+ + E D
Sbjct: 177 EGQRQHREQTGEEAD 191
>gi|448349273|ref|ZP_21538115.1| DNA-directed RNA polymerase subunit E' [Natrialba taiwanensis DSM
12281]
gi|448361201|ref|ZP_21549823.1| DNA-directed RNA polymerase subunit E' [Natrialba asiatica DSM
12278]
gi|448368350|ref|ZP_21555302.1| DNA-directed RNA polymerase subunit E' [Natrialba aegyptia DSM
13077]
gi|445640516|gb|ELY93603.1| DNA-directed RNA polymerase subunit E' [Natrialba taiwanensis DSM
12281]
gi|445651791|gb|ELZ04698.1| DNA-directed RNA polymerase subunit E' [Natrialba asiatica DSM
12278]
gi|445652180|gb|ELZ05080.1| DNA-directed RNA polymerase subunit E' [Natrialba aegyptia DSM
13077]
Length = 189
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTL----VKRLLQDKLEGRMDEEVGSIVSVTEVRDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y AEN S E N + D +R ++
Sbjct: 117 YLAFDAENQQLASNESNRTLGVDDAIRARIV 147
>gi|424813921|ref|ZP_18239099.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalina sp.
J07AB43]
gi|339757537|gb|EGQ42794.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalina sp.
J07AB43]
Length = 189
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ + ++ VP +NL G L+ SI + L D +K+ G L+V T+ +I
Sbjct: 1 MYNRLDVADSIRVPPKNL---GEDLEESIK-QALKDNVEGTISKEAGVVLSVDTINSIEG 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + V + + + ++ EV++G V + G F++ GP++ + M +
Sbjct: 57 GEIEPEDAGVHYETEYEAVVYEPEMKEVVNGEVVDITSFGAFIRIGPLDGLCHVSQIMDE 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIVI 150
Y + EN + +S++ K I V R+I +
Sbjct: 117 YVNLDEENNMLVSDEGDKTLEIGDKVTARIIAV 149
>gi|448414921|ref|ZP_21577870.1| DNA-directed RNA polymerase subunit E' [Halosarcina pallida JCM
14848]
gi|445681618|gb|ELZ34048.1| DNA-directed RNA polymerase subunit E' [Halosarcina pallida JCM
14848]
Length = 192
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E+L P+ R RLL D + +++G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEHLADVTPLRVR----RLLQDKLEGRMDEEVGSVVSVVDVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V V + F +TF EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPGRAGVYYEAEFDALTFDPDMQEVIDGQVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + VRV V+
Sbjct: 117 YLAYDGENQQLASTESNRTLGVGDSVRVRVV 147
>gi|333910904|ref|YP_004484637.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751493|gb|AEF96572.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 188
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D+G+ L++ ++ IGEG++ G PVVF + + EV++G + +++ G F+
Sbjct: 40 RDIGFILSIVDVKEIGEGKIIHGDGAAYHPVVFDALIYIPELHEVVEGEIVDIVEFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDY 121
+ GP++ + M DY
Sbjct: 100 RLGPLDGLIHISQIMDDY 117
>gi|268323238|emb|CBH36826.1| DNA-directed RNA polymerase subunit E' [uncultured archaeon]
Length = 201
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ KV V VP E L G L R +V +L D + K LG F+A+ + ++ E
Sbjct: 1 MYTKVSAIDVVRVPPERL---GDDL-RVVVKEMLQDRLEGRMDKKLGMFIAIQDIVDVKE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ V + +F + F+ E+++G V ++++ G F++ GP++ + L S++ D
Sbjct: 57 GRIMIGDAGVYYETIFDALVFRPKMQEIVEGAVVEIVEFGAFVEIGPLDGL-LHISQITD 115
>gi|222480804|ref|YP_002567041.1| DNA-directed RNA polymerase subunit E' [Halorubrum lacusprofundi
ATCC 49239]
gi|222453706|gb|ACM57971.1| DNA-directed RNA polymerase [Halorubrum lacusprofundi ATCC 49239]
Length = 191
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP ++L + V LL D + +D+G ++V + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPKHL----ADVTDERVKALLQDKLEGRMDEDVGSVVSVIEVHDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV DGTV + ++ G F+ GPV+ + +
Sbjct: 57 GAVLHNRPGVYYEAEFDALTYDPDMQEVADGTVVETVEFGAFVGIGPVDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGT-KWL 155
Y N S E+NP+ K + + +G +WL
Sbjct: 117 YLTFDGVNQQLASSDSDKTLGVDDAVRVRVVTKSIDERNPRDSKIGLTAKQPGLGKHEWL 176
Query: 156 EAEREFQALVSLEGD 170
E +R+ + E D
Sbjct: 177 EGQRQHREQTGEEAD 191
>gi|124485482|ref|YP_001030098.1| DNA-directed RNA polymerase subunit E' [Methanocorpusculum
labreanum Z]
gi|124363023|gb|ABN06831.1| DNA-directed RNA polymerase, subunit E' [Methanocorpusculum
labreanum Z]
Length = 190
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+KL V VP E + G L ++++ +L + K++G F+AVT + +G+
Sbjct: 1 MYYKLKLNDKVRVPPERM---GEDLN-TVILDVLQEQFEGSVDKEMGIFIAVTGVNRVGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + + G + V F + ++ E+++G V + G F+ GP++ + L S++ D
Sbjct: 57 GEIIYSDGGAYYDVDFEAVVLRLSLQEIIEGVVVETTSFGAFVSLGPIDAM-LHMSQISD 115
>gi|448313091|ref|ZP_21502817.1| DNA-directed RNA polymerase subunit E' [Natronolimnobius
innermongolicus JCM 12255]
gi|445599168|gb|ELY53206.1| DNA-directed RNA polymerase subunit E' [Natronolimnobius
innermongolicus JCM 12255]
Length = 191
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V +LL D + +++G ++VT +E+IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKKLLQDKLEGRMDEEVGSVVSVTNVEDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAFDGENQQLASNESNRTLGVDDAVRARIV 147
>gi|428178976|gb|EKX47849.1| DNA-directed RNA polymerase II subunit RPB7 [Guillardia theta
CCMP2712]
Length = 183
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NIGEGRVRENT----GEVLFPVV 75
GP L I RL D+ ++ G L V ++ N+ EG++ G +F V
Sbjct: 20 GPSLAVVIKQRLQDE-VENSCSERYGIVLKVFNIDVDNL-EGKIMPTGMHPGGTAVFTVP 77
Query: 76 FSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY---VQAEN--PV 130
+ I FK F+GEVL+G V G+F++CGP++ +++ + + D + +N P
Sbjct: 78 YDAIVFKPFKGEVLNGVVKSSAAQGLFVQCGPLQ-VFIAKANLADDNNGLEWRGDNTPPC 136
Query: 131 FLSEKNPKIEKDVV-VRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
++S + D +R+ ++GT+ + A+ ++ D+LGP+
Sbjct: 137 WMSRDERIVIGDKTHLRLRILGTRIQNDISQCSAVGTILDDYLGPI 182
>gi|448720127|ref|ZP_21703184.1| DNA-directed RNA polymerase subunit E' [Halobiforma nitratireducens
JCM 10879]
gi|445782495|gb|EMA33337.1| DNA-directed RNA polymerase subunit E' [Halobiforma nitratireducens
JCM 10879]
Length = 191
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G +++T + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKRLLQDKLEGRMDEEVGSVVSITEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFIGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTK------------------------WL 155
Y EN S E N + D VR ++ WL
Sbjct: 117 YLAFDGENQQLASNESNRTLAVDDAVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
E E E + + EG+
Sbjct: 177 EQEHEKREATATEGE 191
>gi|308804628|ref|XP_003079626.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
gi|116058082|emb|CAL53271.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
Length = 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
G + + + NI G V G V F V F + FK F GEVL+G + +HG + G
Sbjct: 53 GLCVTLYEITNISGGAVLSGEGCVCFEVEFKLVLFKPFTGEVLEGKLESSDEHGAHVSIG 112
Query: 107 PVENIYLTCSKMPDYRYVQAENPVFLSEKNP---KIEKDVVVRVIVIGTKWLEAEREFQA 163
+++++ S M D + ++ + N K+E VR V+G+++ ++ + +
Sbjct: 113 FFDDVFIPPSNMQDPSEWDEDEKAWIWDYNGERIKLEVGEKVRFRVVGSRFPDSPKTAEE 172
Query: 164 LVSLEGD 170
L SL D
Sbjct: 173 LASLTAD 179
>gi|452848074|gb|EME50006.1| hypothetical protein DOTSEDRAFT_122159 [Dothistroma septosporum
NZE10]
Length = 167
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 50 LAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVE 109
+ + ++ + E + TG + V + + ++ FRGEV+DG V V+ +G F++ G +
Sbjct: 45 IQIIEIDEVSEPMLVPGTGMAKYTVSYRALVWRPFRGEVVDGLVTSVVSNGFFVEVGGM- 103
Query: 110 NIYLTCSKMP-DYRY-VQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSL 167
++++ + +P + +Y V+ P F IEKD VRV + G + E + F A+ S+
Sbjct: 104 SVFVARAMIPSNLKYTVEGSTPSFTDNSEQNIEKDTQVRVRIKGIRG-EIGQMF-AIGSI 161
Query: 168 EGDFLG 173
D+LG
Sbjct: 162 REDYLG 167
>gi|336476432|ref|YP_004615573.1| DNA-directed RNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929813|gb|AEH60354.1| DNA-directed RNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 188
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ K +G +AVT +E IGEG + G + + V F ITF EV++G V ++++ G
Sbjct: 37 RVDKKIGAIVAVTNVEKIGEGHILVGDGAIYYDVTFEAITFLPQIQEVIEGQVVEIVEFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
F+ GP++ + ++ +N +S+ + K
Sbjct: 97 AFVSIGPMDGLLHVSQITDEFMSYDGKNGRLISKNSGK 134
>gi|282163022|ref|YP_003355407.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
SANAE]
gi|282155336|dbj|BAI60424.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
SANAE]
Length = 195
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ KV+L + +P + L+ L++ I + D R K LG +AV + +IGE
Sbjct: 1 MYRKVRLVDIIRIPPQRLEED---LEQVITETIRDKLEGR-IDKALGSIVAVLDIVDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F I+++ E+++G V +++ G F+ GP++ + +
Sbjct: 57 GHILVGDGAVYYEVTFDAISYRPELQEIVEGQVVEIVAFGAFVSVGPIDCLVHVSQVADE 116
Query: 121 YRYVQAENPVFLSEKNPK 138
+ +N +S+++ K
Sbjct: 117 FMSYDEKNSRLVSKESSK 134
>gi|212545789|ref|XP_002153048.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
gi|210064568|gb|EEA18663.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
Length = 169
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IG+GRV +G + + + I +
Sbjct: 19 GPNVKEYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGDGRVIPGSGHAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAE-NPVFLSEKNPKI 139
K FRGE +D V V G+F GP+ ++++ +P D ++ P + + I
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIPSDIKWEPGTVPPQYTDHADQVI 135
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
E+ +R+ ++G K A+ +++ D+LG
Sbjct: 136 ERGTSLRLKILGVK--PDVSAINAIGTIKEDYLG 167
>gi|88604096|ref|YP_504274.1| DNA-directed RNA polymerase subunit E' [Methanospirillum hungatei
JF-1]
gi|88189558|gb|ABD42555.1| DNA-directed RNA polymerase, subunit E' [Methanospirillum hungatei
JF-1]
Length = 190
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +++L V VP L G L ++++ +L + K++G F+AVT + IGE
Sbjct: 1 MYYRLELIDKVRVPPHRL---GEDLT-TVILDVLQEQLEGSIDKEIGIFIAVTKVLRIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F G+ ++ E+++G V + G F+ GP++ + L S++ D
Sbjct: 57 GEMVPGDGAVYYDVDFEGLALRLSLQEIIEGIVVETTSFGAFVSLGPIDAM-LHVSQISD 115
>gi|289581160|ref|YP_003479626.1| DNA-directed RNA polymerase [Natrialba magadii ATCC 43099]
gi|448284828|ref|ZP_21476083.1| DNA-directed RNA polymerase subunit E' [Natrialba magadii ATCC
43099]
gi|289530713|gb|ADD05064.1| DNA-directed RNA polymerase [Natrialba magadii ATCC 43099]
gi|445568861|gb|ELY23437.1| DNA-directed RNA polymerase subunit E' [Natrialba magadii ATCC
43099]
Length = 189
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTL----VKRLLQDKLEGRMDEEVGSIVSVTEVRDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y AEN S E+NP+ K + + +G WL
Sbjct: 117 YLAFDAENQQLASNESNRTLGVGDPIRARIVTKSIDERNPRDSKIGLTAKQPGLGKHDWL 176
Query: 156 EAEREFQALVSLE 168
++E E Q + E
Sbjct: 177 KSEHEHQEATAGE 189
>gi|383621109|ref|ZP_09947515.1| DNA-directed RNA polymerase subunit E' [Halobiforma lacisalsi AJ5]
gi|448693438|ref|ZP_21696807.1| DNA-directed RNA polymerase subunit E' [Halobiforma lacisalsi AJ5]
gi|445786297|gb|EMA37067.1| DNA-directed RNA polymerase subunit E' [Halobiforma lacisalsi AJ5]
Length = 191
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKRLLQDKLEGRMDEEVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTK------------------------WL 155
Y EN S E N + D VR ++ WL
Sbjct: 117 YLAFDGENQQLASNESNRTLAVDDAVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
E E E + + EG+
Sbjct: 177 EEEHEKREATATEGE 191
>gi|409096803|ref|ZP_11216827.1| DNA-directed RNA polymerase subunit E' [Thermococcus zilligii AN1]
Length = 186
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LAV +E I EG + G VVF+ + ++ E+++G V V +G F+
Sbjct: 40 RDEGVVLAVMDVEEISEGVIVPGDGATYHEVVFNVLVWQPHMHEIVEGEVIDVAPYGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFL---SEKNPKIEKDVVVRVIVIGTK 153
+ GP++ + M DY +N FL +++ K+ + R+I I K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNKQFLGKETKRTLKLGDEARARIIAISVK 152
>gi|261197854|ref|XP_002625329.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
gi|239595292|gb|EEQ77873.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
Length = 169
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V +I EGRV +G + +++ I +
Sbjct: 19 GSHVKEYLTQKLLDD-VEGVCTGDY-YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + G + P+ ++ A P + IE
Sbjct: 77 KPFKGETVDAIVTSVKNQGIFAEVGQLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
K +R+ +IG + R A+ S++ D+LG V
Sbjct: 137 KGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLGSV 169
>gi|268325739|emb|CBH39327.1| DNA-directed RNA polymerase, subunit E [uncultured archaeon]
Length = 207
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ KV V VP E L G L R +V +L D + K LG F+A+ + ++ E
Sbjct: 1 MYTKVSAIDVVRVPPERL---GDDL-RVVVKEMLQDRLEGRMDKKLGMFIAIQDIVDVKE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ V + +F + F+ E+++G V ++++ G F++ GP++ + L S++ D
Sbjct: 57 GRIMIGDAGVYYETIFDALVFRPKMQEIVEGGVVEIVEFGAFVEIGPLDGL-LHISQITD 115
>gi|448357498|ref|ZP_21546196.1| DNA-directed RNA polymerase subunit E' [Natrialba chahannaoensis
JCM 10990]
gi|445648675|gb|ELZ01624.1| DNA-directed RNA polymerase subunit E' [Natrialba chahannaoensis
JCM 10990]
Length = 189
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +D+G ++VT + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTL----VKRLLQDKLEGRMDEDVGSIVSVTEVRDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKN 136
Y AEN S ++
Sbjct: 117 YLAFDAENQQLASNES 132
>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 188
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
G +A+T +E+IGEG + G V + V F I F EV++G V +++ G F+ G
Sbjct: 43 GSIVAITDIESIGEGHIIMGDGAVYYDVTFKAIVFMPMMQEVIEGKVVEIVDFGAFISFG 102
Query: 107 PVENIYLTCSKMPDYRYVQAEN-----------------------PVFLSEKNPKIEK-D 142
++ + D+ +N V ++E++P+ K
Sbjct: 103 AMDGLLHVSQITDDFMSYDGKNARLISKNSNRALAEGDYLRARIVAVSINERDPRESKIG 162
Query: 143 VVVRVIVIGT-KWLEAEREFQA 163
+ +R + +G +WLE ER+ A
Sbjct: 163 LTMRQVGLGQFQWLEEERQATA 184
>gi|162605728|ref|XP_001713379.1| RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
gi|13794311|gb|AAK39688.1|AF083031_45 RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
Length = 196
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
M+ + L N+ +PA+ L+ + L+ +++ +L+ ++G + + ++N
Sbjct: 27 MYAIMTLNQNLFIPAKLLNNQ---LKSTLIAQLIT-LTEGLPFGNVGSIIMIINIDNQKL 82
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
G++ VLF V F + KIF+GE++D V + G+F G + NI+++ +K
Sbjct: 83 YGKILPGFSSVLFKVNFQAVVLKIFKGEIIDAIVKNITSFGIFASAG-ILNIFIS-NKFI 140
Query: 120 DYRYVQAENPVFLSEKNP--KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ ++ + KN I+K+ ++R ++ K+ QA+ ++ +LG
Sbjct: 141 SQDLISQQSQTLFNFKNSTINIKKNDIIRCKILNLKY--NTGSIQAIGCIDDKYLG 194
>gi|327305241|ref|XP_003237312.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
gi|326460310|gb|EGD85763.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
Length = 191
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V + +I EG++ +G + +V+ I +
Sbjct: 19 GSHVKEYLSQKLLDD-VEGICTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE +D V V G+F + GP+ P+ ++ + P + + IE
Sbjct: 77 KPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDSTPPQYTDNADQVIE 136
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+R+ +IG + R A+ S+ D+LG
Sbjct: 137 TGTNLRIKLIGLR--NDVRNMFAIGSIREDYLG 167
>gi|82596806|ref|XP_726413.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii 17XNL]
gi|23481815|gb|EAA17978.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii]
Length = 193
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 26/193 (13%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ NV++ L GP Q+ I +L + + T+ GY + V + +
Sbjct: 1 MYFVIEEWKNVIIKPSQL---GPKYQQYIE-DMLRNSIEGQCTEKYGYIICVIRIMHSEP 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGE----------------VLDGTVHKVLKHGVFLK 104
GRV++ TG ++ V + I FK F+ E VLD V V K G F +
Sbjct: 57 GRVQDGTGMIVVKVKYQAIVFKPFKDEVLFKINKLINKLIKSFVLDAIVTDVNKLGFFAQ 116
Query: 105 CGPVENIYLTCSKMPDY-RYVQ-AENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQ 162
GP++ I+++ + +P Y Y + A P F S + I+ VR+ + G ++ + F
Sbjct: 117 AGPLK-IFISRTAIPKYFEYNEDAHYPCF-SSGSHNIKPQTTVRLKLQGIRY-DLSNMF- 172
Query: 163 ALVSLEGDFLGPV 175
A+ ++ ++LG +
Sbjct: 173 AIATINNEYLGCI 185
>gi|330038755|ref|XP_003239691.1| RNA polymerase II RPB7 subunit-like protein [Cryptomonas
paramecium]
gi|327206615|gb|AEA38793.1| RNA polymerase II RPB7 subunit-like protein [Cryptomonas
paramecium]
Length = 175
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+G++ + +L+ + + ITFK+F+GEVLD + V + G F + GP++ I+++ +P
Sbjct: 57 KGKIITGSPFILYNISYKAITFKVFKGEVLDSILTNVTELGFFCESGPLQ-IFVSKQFIP 115
Query: 120 DYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
D N F + + I+ D +VRV +IG ++ + Q L S++ LG
Sbjct: 116 DEYEYDNLNRCFQNRFSRIKIIKNDTIVRVRIIGLRYDSSYT--QGLGSIKEPHLG 169
>gi|341582210|ref|YP_004762702.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
gi|340809868|gb|AEK73025.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
Length = 186
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LA+ ++ IG+G + G VVF+ + +K EV++G V V +G F+
Sbjct: 40 RDEGVVLAILDVDEIGQGVIVPGDGATYHEVVFNVLVWKPEMHEVVEGEVIDVAPYGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK---DVVVRVIVIGTK 153
+ GP++ + M DY +N F+ ++ +I K + R+I + K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNKQFIGKETNRILKLGDEARARIIAVSVK 152
>gi|307107725|gb|EFN55967.1| hypothetical protein CHLNCDRAFT_145291 [Chlorella variabilis]
Length = 221
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ L NV + ++L K P + +I L F KA LG + + + +IG+
Sbjct: 1 MFILSTLEDNVRIAPQDL-GKPPAV--AITTALEKSFLD-KAVAGLGLVVTLYDILSIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V + G + V F + F+ FR E+L G VHK+ K G+++ G +++ + MP+
Sbjct: 57 GYVYPSDGGAHYKVCFRVVVFRPFRDELLVGKVHKMTKEGMYVDLGFFKDVIIPPHGMPE 116
Query: 121 YRYVQAEN 128
+ + ++
Sbjct: 117 PSFWKGDD 124
>gi|432332214|ref|YP_007250357.1| DNA-directed RNA polymerase subunit E' [Methanoregula formicicum
SMSP]
gi|432138923|gb|AGB03850.1| DNA-directed RNA polymerase subunit E' [Methanoregula formicicum
SMSP]
Length = 213
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+ L V VP + L G L++ +++ +L + K++G F+ VT + ++GE
Sbjct: 1 MYHKLMLEDKVRVPPQRL---GENLEK-VILDVLQEQLEGSIDKEIGIFICVTKVTDVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F + ++ EV++G V + G F+ GP++ + L S++ D
Sbjct: 57 GELVPGDGGVYYDVKFEALVLRLALQEVIEGVVVETTSFGAFVSLGPIDAM-LHVSQISD 115
>gi|242398022|ref|YP_002993446.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
739]
gi|242264415|gb|ACS89097.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
739]
Length = 187
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 43 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVF 102
KD G LAV + I EG + G VVF + +K EV++G V V+ +G F
Sbjct: 39 NKDEGVVLAVLEVHEISEGVIIPGDGATYHDVVFDVLVWKPEMHEVVEGEVIDVVPYGAF 98
Query: 103 LKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK--DVV-VRVIVIGTK 153
++ GP++ + M DY +N F+ ++ + K DVV R+I I K
Sbjct: 99 IRIGPMDGLVHISQLMDDYVVFDEKNAQFVGKEKGHVLKLGDVVRARIIAISEK 152
>gi|315046352|ref|XP_003172551.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
gi|311342937|gb|EFR02140.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
Length = 175
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V + +I EGR+ +G + +V+ I +
Sbjct: 19 GSHVKEYLSQKLLDD-VEGVCTGDY-YIVCVMDMYDISEGRIIPGSGLAEYTIVYRAIVW 76
Query: 82 KIFRGEVL------DGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSE 134
K F+GE L D V V G+F + GP+ P+ ++ A P +
Sbjct: 77 KPFKGETLTAGEKVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDN 136
Query: 135 KNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IEK +R+ +IG + R A+ S+ D+LG
Sbjct: 137 ADQVIEKGTNLRIKLIGLR--NDVRNMFAIGSIREDYLG 173
>gi|384486857|gb|EIE79037.1| hypothetical protein RO3G_03742 [Rhizopus delemar RA 99-880]
Length = 134
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 25/135 (18%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDG---TVHKVLKHGVFL 103
GY + V ++ + +G+V +G F V + I FK F+GEVLDG TV+K++ +
Sbjct: 22 GYVVTVVSVSRLEKGKVLPGSGLAEFKVSYQAILFKPFKGEVLDGLVTTVNKLIPN---- 77
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQA 163
++++ NP S ++ I+KDV VR+ ++GT+ ++A F A
Sbjct: 78 ----------------EFKFDVNGNPPCYSSEDQVIQKDVRVRLKLVGTR-VDATEIF-A 119
Query: 164 LVSLEGDFLGPVSCE 178
+ +++ D+LG ++ +
Sbjct: 120 IGTIKEDYLGVITGQ 134
>gi|429192262|ref|YP_007177940.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
gi|448325661|ref|ZP_21515046.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
gi|429136480|gb|AFZ73491.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
gi|445614676|gb|ELY68344.1| DNA-directed RNA polymerase subunit E' [Natronobacterium gregoryi
SP2]
Length = 191
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G +++T + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKRLLQDKLEGQMDEEVGSVVSITNVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIV------------IG----------TKWL 155
Y EN S ++ + ++ V R++ IG +WL
Sbjct: 117 YLAFDGENQQLASNESSRTLTVDDAVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHEWL 176
Query: 156 EAEREFQALVSLEGD 170
E E E + + EG+
Sbjct: 177 EDEHEKREATATEGE 191
>gi|432328391|ref|YP_007246535.1| DNA-directed RNA polymerase subunit E' [Aciduliprofundum sp.
MAR08-339]
gi|432135100|gb|AGB04369.1| DNA-directed RNA polymerase subunit E' [Aciduliprofundum sp.
MAR08-339]
Length = 196
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 19/146 (13%)
Query: 23 PMLQRSIVVRLLDDFARRKATKDLGYF---------------LAVTTLENIGEGRVRENT 67
PML + R+++D AR K ++ F + + +LE +GEG +
Sbjct: 16 PMLGEDLD-RVVEDLAREKIEGNVYSFPREEVSDPAERKYIIVLILSLEKVGEGIIVPGD 74
Query: 68 GEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAE 127
G V V F + F EV+ G V VLK G F++ GP++ + M D V +
Sbjct: 75 GAVYQKVRFKALAFHPELQEVVIGDVVDVLKFGAFVRFGPIDGLLHISQIMDDVIDVDLD 134
Query: 128 NPVFL---SEKNPKIEKDVVVRVIVI 150
N F+ S++N K++ V+ RV+ +
Sbjct: 135 NKRFVGKESKRNLKVKDKVLARVVAL 160
>gi|448390028|ref|ZP_21565886.1| DNA-directed RNA polymerase subunit E' [Haloterrigena salina JCM
13891]
gi|445667848|gb|ELZ20486.1| DNA-directed RNA polymerase subunit E' [Haloterrigena salina JCM
13891]
Length = 191
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKRLLQDKLEGRMDEEVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIV------------IG----------TKWL 155
Y EN S ++ + +E V R++ IG WL
Sbjct: 117 YLAFDGENQRLSSNESDRALGVEDAVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
E E E + + EG+
Sbjct: 177 EEEHEKREATTAEGE 191
>gi|335440067|ref|ZP_08561790.1| DNA-directed RNA polymerase subunit E [Halorhabdus tiamatea SARL4B]
gi|334889091|gb|EGM27384.1| DNA-directed RNA polymerase subunit E [Halorhabdus tiamatea SARL4B]
Length = 189
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E+L P L V RLL D + +D+G ++VT + +IGE
Sbjct: 1 MYKRVRLRDTVEVPPEHLADVTPGL----VKRLLQDKLEGQMDEDVGSIVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +T+ EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVVPNEPGVYYVAEFDALTYDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + + +G WL
Sbjct: 117 YLAYDGENQQLASRDSNRTLTVGDSVRARIVTKSIDERNPRDSKIGLTAKQVGLGKHGWL 176
Query: 156 EAEREFQA 163
E ER+ +A
Sbjct: 177 EEERKARA 184
>gi|453089186|gb|EMF17226.1| DNA-directed RNA polymerase II subunit RPB7 [Mycosphaerella
populorum SO2202]
Length = 171
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 32 RLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDG 91
RL +D + ++ + + ++ I E + TG + + + I ++ FRGEV+DG
Sbjct: 29 RLYEDMEGKVEGTEM--IVQIIEIDEISEPVLVPGTGMAKYTLSYRAIVWRPFRGEVVDG 86
Query: 92 TVHKVLKHGVFLKCGPVENIYLTCSKMPD-YRY-VQAENPVFLSEKNPKIEKDVVVRVIV 149
V V+ +G F+ G + +++++ + +P +Y V+ P F + IE+ VR+ +
Sbjct: 87 MVTSVVNNGFFVDVGAL-SVFVSKAMIPGALKYTVEGSTPSFTDNSDQTIERGTQVRLRI 145
Query: 150 IGTKWLEAEREFQALVSLEGDFLGPV 175
G + A+ S+ D+LGP+
Sbjct: 146 KGIRGEMG--SMYAIGSIREDYLGPL 169
>gi|448308111|ref|ZP_21497992.1| DNA-directed RNA polymerase subunit E' [Natronorubrum bangense JCM
10635]
gi|445594523|gb|ELY48677.1| DNA-directed RNA polymerase subunit E' [Natronorubrum bangense JCM
10635]
Length = 189
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKRLLQDKLEGRMDEEVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNQPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIV 149
Y EN S ++ + +E V R++
Sbjct: 117 YLAFDGENQQLASSESNQTLGVEDAVRARIVT 148
>gi|448299589|ref|ZP_21489598.1| DNA-directed RNA polymerase subunit E' [Natronorubrum tibetense
GA33]
gi|445587564|gb|ELY41822.1| DNA-directed RNA polymerase subunit E' [Natronorubrum tibetense
GA33]
Length = 189
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V L V VP E L P L V RLL D + + +G ++VT + +IGE
Sbjct: 1 MYKRVTLTDTVEVPPEELGDVSPNL----VKRLLQDKLEGRMDEQVGSVVSVTNVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAYDGENQQLASNESNRTLGVDDAVRARIV 147
>gi|294875732|ref|XP_002767446.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239869032|gb|EER00164.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 143
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GPM + +L + + G + + + + + ++++ TG L VVF GI F
Sbjct: 19 GPMFDIRLDTQLRVELEGNLSKNHDGTIVHIINIVDKSKPKIQDGTGMALVNVVFQGIIF 78
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKI 139
+ F+ EV+D V +V K G F GP++ ++++ S MP D + + PV S+ + +
Sbjct: 79 RPFKNEVMDCWVSEVSKLGFFAYFGPMK-VFVSRSSMPDDVIFRETATPVCYSDADQTV 136
>gi|294939334|ref|XP_002782418.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239894024|gb|EER14213.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GPM + +L + + G + + + + + ++++ TG L VVF GI F
Sbjct: 19 GPMFDIRLDTQLRVELEGNLSKNHDGTIVHIINIVDKSKPKIQDGTGMALVNVVFQGIIF 78
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKI 139
+ F+ EV+D V +V K G F GP++ ++++ S MP D + + PV S+ + +
Sbjct: 79 RPFKNEVMDCWVSEVSKLGFFAYFGPMK-VFVSRSSMPDDVIFRETATPVCYSDADQTV 136
>gi|327400738|ref|YP_004341577.1| DNA-directed RNA polymerase [Archaeoglobus veneficus SNP6]
gi|327316246|gb|AEA46862.1| DNA-directed RNA polymerase [Archaeoglobus veneficus SNP6]
Length = 189
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++++ V VP L G ++ I L + F R ++ G + + +E+IGE
Sbjct: 1 MYARIRVRDTVRVPPTRL---GEDIEEVIRDLLWEQFEGR-LDREYGMLIGIENIEDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ E G V F V F+ I FK EV++G V +V++ G F+ GP++ + D
Sbjct: 57 GRIIEGDGAVYFDVEFTAIVFKPLLQEVIEGEVVEVVEFGAFVSIGPLDALLHMSQITDD 116
Query: 121 YRYVQAENPVFLSEKNPKI--EKDVV-VRVIVIGTKWLEAER 159
+ +N + + K E D+V R++ + K E ER
Sbjct: 117 FMVYDEKNKKLIGRETKKSLGEGDLVRARIVALSLKEREPER 158
>gi|284166710|ref|YP_003404989.1| DNA-directed RNA polymerase [Haloterrigena turkmenica DSM 5511]
gi|284016365|gb|ADB62316.1| DNA-directed RNA polymerase [Haloterrigena turkmenica DSM 5511]
Length = 191
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPDL----VKRLLQDKLEGRMDEEVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + +G WL
Sbjct: 117 YLAFDGENQRLSSNESDRALGVDDAVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
E E E + + EG+
Sbjct: 177 EEEHEKREATTAEGE 191
>gi|448399137|ref|ZP_21570452.1| DNA-directed RNA polymerase subunit E' [Haloterrigena limicola JCM
13563]
gi|445669482|gb|ELZ22092.1| DNA-directed RNA polymerase subunit E' [Haloterrigena limicola JCM
13563]
Length = 189
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPGL----VKRLLQDKLEGRMDEEVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GAVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGT-KWL 155
Y EN S E+NP+ K + + +G +WL
Sbjct: 117 YLAFDGENQQLSSNESDRTLGVDDAVRTRIVTKSIDERNPRDSKIGLTAKQPGLGKHQWL 176
Query: 156 EAEREFQALVSLE 168
E ERE + + E
Sbjct: 177 EEEREKREATAGE 189
>gi|219118585|ref|XP_002180062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408319|gb|EEC48253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 181
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGI 79
GP L+ +IV RLL + A + GY + V + + I G + +TG V+F V ++ +
Sbjct: 19 GPKLKATIV-RLLKEHVEGLALANYGYVVNVIEVPEDQIRSGIIEYDTGNVVFTVKYTAL 77
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
+ F EVLD V + G F CGP+ I+++ MP+
Sbjct: 78 LLRPFLNEVLDAVVTQCNALGFFAFCGPLR-IFVSKHSMPE 117
>gi|429961557|gb|ELA41102.1| hypothetical protein VICG_01895 [Vittaforma corneae ATCC 50505]
Length = 154
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 17/130 (13%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
GY ++V ++ I EG+V TG + F V + + K GE++D + K G F G
Sbjct: 42 GYIISVLGIDGISEGKVLL-TGHISFDVEYQAVVLKPTSGEIVDAPIVSSTKMGYFASVG 100
Query: 107 PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVS 166
P+ +I+++ ++P+ + N + VVR+ +IGTK +++ + + A+ +
Sbjct: 101 PL-SIFISNYQIPNTTLEELGN-------------NSVVRLKIIGTK-IDSTKVY-AIGT 144
Query: 167 LEGDFLGPVS 176
L DFLG +S
Sbjct: 145 LNDDFLGVIS 154
>gi|16082590|ref|NP_394548.1| DNA-directed RNA polymerase subunit E' [Thermoplasma acidophilum
DSM 1728]
Length = 192
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLD----DFARRKATKDLGYFLAVTTL- 55
M++ V+ + VP E L + R + R L+ D K +++ G +L ++ L
Sbjct: 1 MYMLVEDKYIARVPPEMLGEDYDVAVREVTKRSLEGRLVDVINEKTSQNEGKYLVISVLY 60
Query: 56 -ENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLT 114
E+IGEG + G V V + + + E++DG V V K G F+K E +
Sbjct: 61 TESIGEGTIVHGDGGVYQEVKYRALVYYPEMQEIVDGEVVSVQKFGAFIKFSSFEGLLHI 120
Query: 115 CSKMPDYRYVQAENPVFL---SEKNPKIEKDVVVRVIVI 150
M D + EN F+ ++++ K+ V VR++ +
Sbjct: 121 SQIMDDRIDIDLENKRFIGKETKRDLKVGDRVRVRIVAM 159
>gi|448353799|ref|ZP_21542572.1| DNA-directed RNA polymerase subunit E' [Natrialba hulunbeirensis
JCM 10989]
gi|445639650|gb|ELY92753.1| DNA-directed RNA polymerase subunit E' [Natrialba hulunbeirensis
JCM 10989]
Length = 189
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSPTL----VKRLLQDKLEGRMDEEVGSIVSVTKVRDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISNE 116
Query: 121 YRYVQAENPVFLSEKN 136
Y AEN S ++
Sbjct: 117 YLAFDAENQQLASNES 132
>gi|11498717|ref|NP_069946.1| DNA-directed RNA polymerase subunit E' [Archaeoglobus fulgidus DSM
4304]
gi|2649472|gb|AAB90126.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Archaeoglobus
fulgidus DSM 4304]
Length = 189
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++KL V VP L G +++ I L + F R ++ G + + ++E IGE
Sbjct: 1 MYARIKLRDTVRVPPSKL---GEDIEKVINSLLWEQFEGR-LDREYGMIIGIESIEEIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ E G V F VVF+ I F+ EV++G V ++++ G F+ GP + + D
Sbjct: 57 GRIIEGDGGVYFDVVFNAICFRPLHQEVVEGEVIEIVEFGAFVSIGPFDALLHMSQVTDD 116
Query: 121 YRYVQAENPVFLSEKNPKIEKD---VVVRVIVIGTKWLEAER 159
Y +N + + K+ ++ V R++ + K E E+
Sbjct: 117 YMVFDEKNKRLVGRETKKVLQEGDKVRARIVSLSLKEREPEK 158
>gi|410720722|ref|ZP_11360075.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
gi|410600433|gb|EKQ54961.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
Length = 194
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+L K+ V +P + P+ + + +L++ K K +G + V +E IG
Sbjct: 1 MYLISKIEDTVRIPPSRFEE--PL--NDVAIEILNEGYVGKIDKKMGLMVTVKDIEEIGV 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G VVF+ + FK E+++G V +V + G F++ GP++ + D
Sbjct: 57 GKVIMGDGAAYHEVVFTALFFKPELHEIVEGEVIEVTEFGAFIRIGPMDGLVHVSQVTDD 116
Query: 121 YRYVQAENPVFLSEKNPK 138
Y + + +++ K
Sbjct: 117 YINYDGKRGALIGKESKK 134
>gi|48477938|ref|YP_023644.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
gi|48430586|gb|AAT43451.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
Length = 195
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 1 MFLKVKLPWNVVVPAENL--DAKGPMLQ---RSIVVRLLD--DFARRKATKDLGYFLAVT 53
M++ ++ + VP E L D + +L+ R++V +L+D D R K + +++
Sbjct: 1 MYISLENDYVARVPPELLGDDYREAVLEITKRNLVGKLVDINDSTGRNMGK--CFIVSIE 58
Query: 54 TLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYL 113
+E +G+G + G V VV++ I + EV+DG V + K G F+K GP E +
Sbjct: 59 NIELVGDGTIVHGDGGVYQDVVYTAIAYYPKMHEVVDGVVISIQKFGAFVKFGPFEGLLH 118
Query: 114 TCSKMPDYRYVQAENPVFL---SEKNPKIEKDVVVRVIVI 150
M D + N F+ ++++ KI + VR++ +
Sbjct: 119 ISQIMDDIINIDMANQRFVGRDTKEDLKIGDKIRVRIVAM 158
>gi|116754621|ref|YP_843739.1| DNA-directed RNA polymerase subunit E' [Methanosaeta thermophila
PT]
gi|116666072|gb|ABK15099.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta thermophila
PT]
Length = 206
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++KL V +P E++ G L ++ + L + + R + LG +A+ +++IGE
Sbjct: 1 MYKRMKLEGVVRIPPEDM---GNPLNDAVEMALRNKYEAR-VDRTLGAIVAILGVDSIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ G V + V+F + FK EV++G V +++K G F+ GP + + +
Sbjct: 57 GRIIAGDGAVYYDVIFDAVVFKPEMQEVVEGEVVEIVKFGAFVSIGPFDGLLHVSQITDE 116
Query: 121 YRYVQAENPVFLSEKNPKI--EKD-VVVRVIVI 150
Y +N +S+ K E D V R+I +
Sbjct: 117 YMAYDEKNARLVSKDTNKFLAEGDRVRARIIAV 149
>gi|14521883|ref|NP_127359.1| DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
gi|5459103|emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit E' [Pyrococcus abyssi
GE5]
gi|380742519|tpe|CCE71153.1| TPA: DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
Length = 188
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K KD G L++ ++ +G+G + G VVF + ++ + EV++GTV + G
Sbjct: 37 KYDKDEGVILSIVEVKEVGDGIIVPGDGATYHEVVFDVLVWEPKQQEVVEGTVVDAVPFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP---KIEKDVVVRVIVIGTK 153
F++ GP++ + M DY N F+ ++ KI V R+I + K
Sbjct: 97 AFVRIGPMDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDAVRARIITVSAK 152
>gi|448338403|ref|ZP_21527450.1| DNA-directed RNA polymerase subunit E' [Natrinema pallidum DSM
3751]
gi|445622717|gb|ELY76162.1| DNA-directed RNA polymerase subunit E' [Natrinema pallidum DSM
3751]
Length = 189
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSP----DRVKRLLQDKLEGRMDEEVGSIVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIV 149
Y EN S ++ + +E V R++
Sbjct: 117 YLAFDGENQQLASNESARSLGVEDAVRARIVT 148
>gi|297618529|ref|YP_003706634.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
gi|297377506|gb|ADI35661.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
Length = 189
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KDLG+ LA+ ++ I EG + G F+ +T++ E+++G + +++ G F+
Sbjct: 40 KDLGFILAIEDIDQISEGDIIYGDGAAYHDTTFNILTYEPEVHEMIEGEIVDIVEFGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI-EKDVVVRVIVIGTKWLEAEREFQ 162
+ GP++ + M DY + + ++ K+ EK VR ++ L+ +R+
Sbjct: 100 RLGPLDGLIHISQVMDDYVAFDPQREAIIGKETGKVLEKGDKVRARIVAVS-LKEDRKRG 158
Query: 163 ALVSL 167
+ ++L
Sbjct: 159 SKIAL 163
>gi|76803168|ref|YP_331263.1| DNA-directed RNA polymerase subunit E' [Natronomonas pharaonis DSM
2160]
gi|76559033|emb|CAI50631.1| DNA-directed RNA polymerase subunit E [Natronomonas pharaonis DSM
2160]
Length = 189
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P L V RLL D + +D+G ++VT + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPRHLADVSPEL----VKRLLQDKLEGQMDEDVGSIVSVTAVHDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVLPNRPGVYYEAEFDAVTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPKI 139
Y EN S + ++
Sbjct: 117 YLAYDEENQQLASRDSNRV 135
>gi|452206398|ref|YP_007486520.1| DNA-directed RNA polymerase subunit E [Natronomonas moolapensis
8.8.11]
gi|452082498|emb|CCQ35756.1| DNA-directed RNA polymerase subunit E [Natronomonas moolapensis
8.8.11]
Length = 189
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P L R RLL D + +D+G ++VT + IG+
Sbjct: 1 MYKRVRLKDTVEVPPRHLADVSPELVR----RLLQDKLEGQMDEDIGSIVSVTNVHEIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVLPNRPGVYYEADFDAVTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPKI 139
Y EN S + ++
Sbjct: 117 YLAYDGENQQLASRDSNRV 135
>gi|448341704|ref|ZP_21530661.1| DNA-directed RNA polymerase subunit E' [Natrinema gari JCM 14663]
gi|448347386|ref|ZP_21536258.1| DNA-directed RNA polymerase subunit E' [Natrinema altunense JCM
12890]
gi|445627118|gb|ELY80444.1| DNA-directed RNA polymerase subunit E' [Natrinema gari JCM 14663]
gi|445630787|gb|ELY84047.1| DNA-directed RNA polymerase subunit E' [Natrinema altunense JCM
12890]
Length = 189
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSP----DRVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIV 149
Y EN S ++ + +E V R++
Sbjct: 117 YLAFDGENQQLASNESARSLGVEDAVRARIVT 148
>gi|219851265|ref|YP_002465697.1| DNA-directed RNA polymerase subunit E' [Methanosphaerula palustris
E1-9c]
gi|219545524|gb|ACL15974.1| DNA-directed RNA polymerase [Methanosphaerula palustris E1-9c]
Length = 199
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+ L V VP L G L + +++ +L + K++G F+AVT + +GE
Sbjct: 1 MYYKLLLEDKVRVPPHRL---GEDLIK-VILDVLQEQLEGSIDKEIGIFIAVTKVIEVGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F + ++ EVL+G V + G F+ GP++ + L S++ D
Sbjct: 57 GEMVPGDGAVYYDVKFEALGLRLSLQEVLEGVVVETTTFGAFVSLGPIDAM-LHVSQISD 115
>gi|15678292|ref|NP_275407.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621314|gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 184
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+ V +P + + P+ + V +L++ + K+LG + V +E+IG
Sbjct: 1 MYYVTKIVDTVRIPPDRFEE--PL--EEVAVEVLNETYVGRMDKNLGQLITVKEIEDIGI 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G V F+ + FK E+++G V ++ + G F++ GPV+ + D
Sbjct: 57 GKVIMGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFGAFVRIGPVDGLVHVSQVTDD 116
Query: 121 Y 121
Y
Sbjct: 117 Y 117
>gi|221505857|gb|EEE31502.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1221
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 12 VVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVL 71
V+P + +G +L+++I + L+ K + G +A L I +R G
Sbjct: 1034 VLPETQMKNQGEVLRKAIEEKYLN-----KVVVNCGLAVAFYELRRIQSATIRSGDGSAR 1088
Query: 72 FPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
+ V FS + F+ F+GE+L+GT+ HG+ + G ++Y+ + +
Sbjct: 1089 YKVEFSLVFFRPFQGEILEGTLMHSDNHGLRISLGFFHDVYIPAAAL 1135
>gi|237838547|ref|XP_002368571.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
gi|211966235|gb|EEB01431.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
Length = 1215
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 12 VVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVL 71
V+P + +G +L+++I + L+ K + G +A L I +R G
Sbjct: 1028 VLPETQMKNQGEVLRKAIEEKYLN-----KVVVNCGLAVAFYELRRIQSATIRSGDGSAR 1082
Query: 72 FPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
+ V FS + F+ F+GE+L+GT+ HG+ + G ++Y+ + +
Sbjct: 1083 YKVEFSLVFFRPFQGEILEGTLMHSDNHGLRISLGFFHDVYIPAAAL 1129
>gi|221484160|gb|EEE22456.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1214
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 12 VVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVL 71
V+P + +G +L+++I + L+ K + G +A L I +R G
Sbjct: 1027 VLPETQMKNQGEVLRKAIEEKYLN-----KVVVNCGLAVAFYELRRIQSATIRSGDGSAR 1081
Query: 72 FPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
+ V FS + F+ F+GE+L+GT+ HG+ + G ++Y+ + +
Sbjct: 1082 YKVEFSLVFFRPFQGEILEGTLMHSDSHGLRISLGFFHDVYIPAAAL 1128
>gi|375082560|ref|ZP_09729616.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis DSM
5473]
gi|374742780|gb|EHR79162.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis DSM
5473]
Length = 187
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD G LA+ + I EG + G VF + +K EV++G V V+ +G F+
Sbjct: 40 KDEGVILAILDVHEISEGVIIHGDGATYHEAVFDVLVWKPEMHEVVEGEVIDVVPYGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK---DVVVRVIVIGTK 153
+ GP++ + M DY +N F+ ++ I K V R+I + K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNAQFVGKEKGYILKLGDAVRARIIAVSEK 152
>gi|408382504|ref|ZP_11180048.1| DNA-directed RNA polymerase subunit E' [Methanobacterium formicicum
DSM 3637]
gi|407814859|gb|EKF85482.1| DNA-directed RNA polymerase subunit E' [Methanobacterium formicicum
DSM 3637]
Length = 194
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+L K+ V +P + P+ + + ++++ K K +G + V +E IG
Sbjct: 1 MYLISKIEDTVRIPPSRFEE--PL--NEVAIEIINESYVGKIDKKMGLMVTVKDIEEIGV 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G VVF+ + FK E+++G V +V + G F++ GP++ + D
Sbjct: 57 GKVIMGDGAAYHEVVFNALFFKPELHEIVEGEVIEVTEFGAFIRIGPMDGLVHVSQVTDD 116
Query: 121 YRYVQAENPVFLSEKNPK 138
Y + + +++ K
Sbjct: 117 YINYDGKRGALIGKESKK 134
>gi|296109734|ref|YP_003616683.1| DNA-directed RNA polymerase [methanocaldococcus infernus ME]
gi|295434548|gb|ADG13719.1| DNA-directed RNA polymerase [Methanocaldococcus infernus ME]
Length = 184
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
K+LG+ L++ ++ IGEGRV G PVVF + +K E+++G V V+ G+F+
Sbjct: 40 KNLGFVLSIIDVKEIGEGRVIHGDGSAYHPVVFEALIYKPEIYELVEGEVVDVVDFGLFV 99
Query: 104 KCGPVENIYLTCSKMPDY-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQ 162
+ GP++ + M DY Y + +E +E VR ++ L+++R+
Sbjct: 100 RLGPLDGLVHVSQIMDDYVSYDPKREAIIGNETKKVVEVGDTVRARIVAIS-LKSDRKRG 158
Query: 163 ALVSL 167
+ ++L
Sbjct: 159 SKIAL 163
>gi|21226698|ref|NP_632620.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
gi|20904984|gb|AAM30292.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
Length = 194
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
K LG +AV ++ +GEG + G V + V F I F E+++G V + + GVF+
Sbjct: 40 KKLGSLVAVYNIDEVGEGHILVGDGAVYYDVTFEAIMFYPDLQEIIEGEVVEAVGFGVFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
GP++ + D+ A+N +++ K
Sbjct: 100 GMGPMDGLLHVSQITDDFISYDAKNARLVTKSGGK 134
>gi|452987401|gb|EME87156.1| hypothetical protein MYCFIDRAFT_89029 [Pseudocercospora fijiensis
CIRAD86]
Length = 170
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
I+ +L DD ++ + + +++I E + TG + + + I ++ FRGEV
Sbjct: 26 IIAKLYDDMQGNIEGTEI--VIQIIGVDDISEPVLVPGTGMAKYVLSYRAIIWRPFRGEV 83
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNPKIEKDVVVR 146
+DG V V+ +G F++ G + ++++ S +P + +Y V+ P F ++ N +IE+ +R
Sbjct: 84 VDGLVTTVVSNGFFVEVGAM-TVFVSRSMIPSNLKYTVEGSTPSF-TDNNDQIERGTQIR 141
Query: 147 VIVIGTKWLEAEREFQALVSLEGDFLGPV 175
+ + G + E F A+ S+ D+LG +
Sbjct: 142 LRLKGIRG-EIGSMF-AVGSIAEDYLGAL 168
>gi|257053274|ref|YP_003131107.1| DNA-directed RNA polymerase subunit E' [Halorhabdus utahensis DSM
12940]
gi|256692037|gb|ACV12374.1| DNA-directed RNA polymerase [Halorhabdus utahensis DSM 12940]
Length = 189
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E+L P L V RLL + + +D+G ++VT + +IGE
Sbjct: 1 MYKRVRLRDTVEVPPEHLADVTPGL----VKRLLQEKLEGRMDEDVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVVPNEPGVYYVAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + + +G WL
Sbjct: 117 YLAYDGENQQLASRDSNRTLTVGDSVRARIVTKSIDERNPRDSKIGLTAKQVGLGKHGWL 176
Query: 156 EAEREFQA 163
+ ER+ +A
Sbjct: 177 DEERKARA 184
>gi|452209179|ref|YP_007489293.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Tuc01]
gi|452099081|gb|AGF96021.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Tuc01]
Length = 190
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
K LG +AV ++ +GEG + G V + V F I F E+++G V + + GVF+
Sbjct: 36 KKLGSLVAVYNIDEVGEGHILVGDGAVYYDVTFEAIMFYPDLQEIIEGEVVEAVGFGVFI 95
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
GP++ + D+ A+N +++ K
Sbjct: 96 GMGPMDGLLHVSQITDDFISYDAKNARLVTKNGGK 130
>gi|167042994|gb|ABZ07707.1| putative RNA polymerase Rpb7, N-terminal domain protein [uncultured
marine microorganism HF4000_ANIW137P11]
Length = 182
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARR----KATKDLGYFLAVTTLE 56
M+ V L + +PAE + +G L+ I D+ A + +D Y L E
Sbjct: 1 MYSLVTLEDTIRIPAEYI-RRGRKLEDHI-----DELAHAAFEGRFDEDENYTLLTFNHE 54
Query: 57 NIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVE 109
+G G++ G + V F + F++ EV+DG V ++ ++G F++ GP+E
Sbjct: 55 TVGRGKIIHGDGAIYQRVRFKALHFRMEANEVVDGAVSEISEYGAFIRIGPIE 107
>gi|70983610|ref|XP_747332.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|66844958|gb|EAL85294.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|159123662|gb|EDP48781.1| RNA polymerase II subunit 7 [Aspergillus fumigatus A1163]
Length = 139
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP ++ ++ RL ++ R T D + + V + +IGEGRV +G+ + + + I +
Sbjct: 19 GPNMREYLINRLNEEEEGR-CTGD-HFVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGP----VENIYLTCSKMPDYRYVQAENPVFLSEKN 136
K FRGE +D V V G+F GP + YL +++ R + PV+ S+ +
Sbjct: 77 KPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKYLLSTRIMPTRSSK-RGPVYGSKSS 134
>gi|91774198|ref|YP_566890.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
DSM 6242]
gi|91713213|gb|ABE53140.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
DSM 6242]
Length = 192
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ K LG +A+T +E +GEG + G V + V+F I F EV++G V + ++ G
Sbjct: 37 RVDKALGSIVAITDIEEVGEGHILVGDGAVYYDVIFEAIIFIPQLQEVIEGLVVETVEFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI--EKDVV-VRVIVIGTKWLE 156
F+ G ++ + D+ +N +S+ + E D V R++ + T E
Sbjct: 97 AFVSIGAMDGLLHVSQITDDFMSYDGKNGRLISKVGNRTLSEGDKVRARIVAVSTNERE 155
>gi|257386793|ref|YP_003176566.1| DNA-directed RNA polymerase subunit E' [Halomicrobium mukohataei
DSM 12286]
gi|257169100|gb|ACV46859.1| DNA-directed RNA polymerase [Halomicrobium mukohataei DSM 12286]
Length = 192
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P L V +LL D + +D+G ++V +++IGE
Sbjct: 1 MYKRVRLRDTVEVPPRHLADVSPDL----VKKLLQDKLEGRMDEDVGSIVSVIDVKDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVLPNKPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y E S E+NP+ K + + + +G WL
Sbjct: 117 YLAYDEEGQALASRESNRTLGTGDAVRARIVTKSIDERNPRDSKIGLTAKQVGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
+ ERE +A + GD
Sbjct: 177 QEEREKRAAEAEAGD 191
>gi|304314475|ref|YP_003849622.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
marburgensis str. Marburg]
gi|302587934|gb|ADL58309.1| predicted DNA-directed RNA polymerase subunit E'
[Methanothermobacter marburgensis str. Marburg]
Length = 184
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ K+ V +P + + P+ + + +L++ + ++LG + V +E+IG
Sbjct: 1 MYYITKIVDTVRIPPDRFEE--PL--EEVAIEVLNETYVGRMDRNLGQMITVKEIEDIGI 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G V F+ + FK E+++G V ++ + G F++ GPV+ + D
Sbjct: 57 GKVIMGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFGAFVRIGPVDGLVHVSQVTDD 116
Query: 121 Y-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAERE 160
Y Y + + E ++++ +VR ++ L+ RE
Sbjct: 117 YITYDAKKGSLTGKETGKRLDEGDLVRARIVALS-LKGRRE 156
>gi|257076915|ref|ZP_05571276.1| DNA-directed RNA polymerase subunit E' [Ferroplasma acidarmanus
fer1]
Length = 191
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 1 MFLKVKLPWNVVVPAENL-----DAKGPMLQRSIVVRLLDDFARRKATKDLG--YFLAVT 53
M++ ++ + + VP E L DA + ++ +L+D ++ K++G Y ++V
Sbjct: 1 MYILLEDEYVIRVPPELLNDNYSDAVAEASKSTLEGKLVD---IQEGQKNIGKSYIVSVN 57
Query: 54 TLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYL 113
++E GEG + G V + +S + + EV+DG V V K G F+K GP E +
Sbjct: 58 SIEMKGEGTIVHGDGGVYQSIKYSALAYFPKMHEVVDGIVVAVQKFGAFIKFGPFEGLLH 117
Query: 114 TCSKMPDYRYVQAENPVFLSEKNPKIE 140
M D + EN + K+ K+E
Sbjct: 118 ISQIMDDAINIDMENQRIVG-KDSKME 143
>gi|433589883|ref|YP_007279379.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|448333095|ref|ZP_21522309.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|448378798|ref|ZP_21560830.1| DNA-directed RNA polymerase subunit E' [Haloterrigena
thermotolerans DSM 11522]
gi|433304663|gb|AGB30475.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|445623979|gb|ELY77374.1| DNA-directed RNA polymerase subunit E' [Natrinema pellirubrum DSM
15624]
gi|445666254|gb|ELZ18922.1| DNA-directed RNA polymerase subunit E' [Haloterrigena
thermotolerans DSM 11522]
Length = 189
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSP----DRVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E + + D VR ++
Sbjct: 117 YLAFDGENQRLSSNESDRALGVDDAVRARIV 147
>gi|336254874|ref|YP_004597981.1| DNA-directed RNA polymerase [Halopiger xanaduensis SH-6]
gi|335338863|gb|AEH38102.1| DNA-directed RNA polymerase [Halopiger xanaduensis SH-6]
Length = 192
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++VT + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPEALGDVSPDL----VKRLLQDKLEGRMDEEVGSIVSVTEVHDIGQ 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNEPGVYYEADFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E + + D +R ++
Sbjct: 117 YLAFDGENQRLSSNESDRALGVDDAIRTRIV 147
>gi|448329047|ref|ZP_21518349.1| DNA-directed RNA polymerase subunit E' [Natrinema versiforme JCM
10478]
gi|445614507|gb|ELY68181.1| DNA-directed RNA polymerase subunit E' [Natrinema versiforme JCM
10478]
Length = 189
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 29/193 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P V RLL D + +++G ++VT + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPEELGDVSP----DRVKRLLQDKLEGRMDEEVGSVVSVTDVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAVTFDPEMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + +G WL
Sbjct: 117 YLAFDGENQRLASNESARSLGVDDAVRTRIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLE 168
E ERE + + E
Sbjct: 177 EEEREKREATAGE 189
>gi|388579438|gb|EIM19762.1| hypothetical protein WALSEDRAFT_55467 [Wallemia sebi CBS 633.66]
Length = 223
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ +L + V NL+ L SIV + ++ K +DLG L + +L + E
Sbjct: 1 MFILTELKDTIAVKPSNLNKD---LLDSIVDSINYKYSN-KIIQDLGLALCLHSLLDSSE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ + G V + F+ I F+ F GE+L V + G+ G ++I++ +P
Sbjct: 57 GFIQHSNGNVYYKCKFNLIIFRPFVGEILIAKVKSTSEEGITASVGFFDDIFIPIYNLPP 116
Query: 121 Y-RYVQAENPVF 131
+Y +AE+ F
Sbjct: 117 ITQYDKAESTFF 128
>gi|84489433|ref|YP_447665.1| DNA-directed RNA polymerase subunit E' [Methanosphaera stadtmanae
DSM 3091]
gi|84372752|gb|ABC57022.1| RpoE1 [Methanosphaera stadtmanae DSM 3091]
Length = 185
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K K LG + VT + + EG+V G + V F+ + +K EV+DG V ++++ G
Sbjct: 37 KLDKKLGILVMVTEVIDHSEGKVVIGDGAAFYHVKFNALFYKPMLHEVIDGEVIEIIEFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDY-RYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151
F++ GP++ + DY Y + E N +++ VR ++
Sbjct: 97 AFVRIGPMDGLVHVSQITNDYINYDVKRGALLAKESNKSLDETDFVRARIVA 148
>gi|156936879|ref|YP_001434675.1| DNA-directed RNA polymerase subunit E' [Ignicoccus hospitalis
KIN4/I]
gi|156565863|gb|ABU81268.1| DNA-directed RNA polymerase, subunit E' [Ignicoccus hospitalis
KIN4/I]
Length = 177
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
++LG L VT ++ EG + G F+ + FK R EV++G V V K+G+++
Sbjct: 40 EELGIILTVTDVDISPEGYIVPGDGGTYHEATFTLLAFKPLRNEVVEGIVVNVTKNGIYV 99
Query: 104 KCGPVENIYLTCSKMPDYR--YVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161
GP++ + + +++ D R Y A + + I++ +VR ++ + R
Sbjct: 100 NIGPIDGM-VHKAQLGDERFEYDAATGSMVGTSTKTVIKRGDLVRARIV---QISTRRGL 155
Query: 162 QALVSLEGDFLGPV 175
+ +S++G +LG +
Sbjct: 156 KVGMSMKGPYLGKI 169
>gi|20092492|ref|NP_618567.1| DNA-directed RNA polymerase subunit E' [Methanosarcina acetivorans
C2A]
gi|19917756|gb|AAM07047.1| DNA-directed RNA polymerase, subunit E [Methanosarcina acetivorans
C2A]
Length = 194
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
K LG +AV ++ +GEG + G V + V F I F E+++G V + + GVF+
Sbjct: 40 KKLGSLVAVYNIDEVGEGHILVGDGAVYYDVTFEAIMFIPELQEIIEGEVVEAVGFGVFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
GP++ + D+ A+N +++ K
Sbjct: 100 GMGPMDGLLHVSQITDDFISYDAKNARLVTKNGGK 134
>gi|10640403|emb|CAC12217.1| DNA-directed RNA polymerase, subunit E related protein
[Thermoplasma acidophilum]
Length = 189
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGITFKI 83
+RS+ RL+D K +++ G +L ++ L E+IGEG + G V V + + +
Sbjct: 28 KRSLEGRLVD-VINEKTSQNEGKYLVISVLYTESIGEGTIVHGDGGVYQEVKYRALVYYP 86
Query: 84 FRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFL---SEKNPKIE 140
E++DG V V K G F+K E + M D + EN F+ ++++ K+
Sbjct: 87 EMQEIVDGEVVSVQKFGAFIKFSSFEGLLHISQIMDDRIDIDLENKRFIGKETKRDLKVG 146
Query: 141 KDVVVRVIVI 150
V VR++ +
Sbjct: 147 DRVRVRIVAM 156
>gi|433639500|ref|YP_007285260.1| DNA-directed RNA polymerase subunit E' [Halovivax ruber XH-70]
gi|448376929|ref|ZP_21559929.1| DNA-directed RNA polymerase subunit E' [Halovivax asiaticus JCM
14624]
gi|433291304|gb|AGB17127.1| DNA-directed RNA polymerase subunit E' [Halovivax ruber XH-70]
gi|445656665|gb|ELZ09499.1| DNA-directed RNA polymerase subunit E' [Halovivax asiaticus JCM
14624]
Length = 189
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP E L P L V RLL D + +++G ++V +++IGE
Sbjct: 1 MYKRVRLKDTVEVPPEALGDVSPDL----VKRLLQDKLEGRMDEEVGSIVSVVDVDDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNEPGVYYEAEFDAVTFDPKMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIV 149
Y EN S ++ + +E + R++
Sbjct: 117 YLAFDRENQRLSSSESDQALGVEDAIRTRIVT 148
>gi|284161716|ref|YP_003400339.1| DNA-directed RNA polymerase [Archaeoglobus profundus DSM 5631]
gi|284011713|gb|ADB57666.1| DNA-directed RNA polymerase [Archaeoglobus profundus DSM 5631]
Length = 187
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K + G + + ++++IGEG++ E G V F V F+ +TFK EV++G V +V++ G
Sbjct: 37 KLDTEYGMVIGIESVDSIGEGKIVEGDGGVYFDVEFTALTFKPLLQEVVEGEVVEVVEFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK-IEKDVVVRVIVI 150
F+ GP++ + M DY +N + ++ + IEK +VR ++
Sbjct: 97 AFVSIGPLDALLHRSQIMDDYIVYDEKNERLIGKETKRTIEKGDLVRARIV 147
>gi|150403357|ref|YP_001330651.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C7]
gi|150034387|gb|ABR66500.1| DNA-directed RNA polymerase [Methanococcus maripaludis C7]
Length = 187
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD+G+ L++ ++N+ EG + G F+ +T+ EV+DG + V++ G F+
Sbjct: 40 KDVGFILSIVDVDNVSEGSIIYGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI-EKDVVVRVIVIGTKWLEAER 159
+ GP++ + M D+ + + ++ K+ EK VR ++ E ++
Sbjct: 100 RLGPLDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAVSLREEKK 156
>gi|393221996|gb|EJD07480.1| hypothetical protein FOMMEDRAFT_143872 [Fomitiporia mediterranea
MF3/22]
Length = 243
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
+++I+ L +A R D+G + V + GEG+VR G + VVF + F+ F
Sbjct: 23 EQAIINELNKKYANR-VLHDVGLCICVFDIAQAGEGKVRYGDGCLWHRVVFRMVVFRPFS 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKD 142
GEV+ V + G+ L G +++++ S +P + +E F K+ +E+D
Sbjct: 82 GEVILAKVKSSDEEGIRLSIGFFDDMHIPPSYLPAPSAFDPSERAYFWIAKHAPLEED 139
>gi|392564956|gb|EIW58133.1| polymerase III polypeptide H [Trametes versicolor FP-101664 SS1]
Length = 220
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
Q+++ L +A R D+G + V L +GEG+VR G + + VVF + F+ F
Sbjct: 23 QQAVTNELNKKYANR-VLHDVGLCICVFDLSEVGEGKVRYGDGCLWYKVVFRLVVFRPFA 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
EVL V + G+ L G ++IY+ +P+
Sbjct: 82 SEVLLARVKSSDEDGIRLTVGFFDDIYVPLVYLPE 116
>gi|428178891|gb|EKX47764.1| DNA-directed RNA polymerase III subunit RPC25 [Guillardia theta
CCMP2712]
Length = 187
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDL---GYFLAVTTLEN 57
MF+ VK+ V +PA L RS+ V + ++ + + L G + + +E
Sbjct: 1 MFVLVKMKDAVPIPASELSKP-----RSLAVS--NQIEKKYSNRVLLGTGLCVCLYEIEE 53
Query: 58 IGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSK 117
+GEG + + V V FS + F+ F GEV+ G++H+ G+++ G ++I++
Sbjct: 54 LGEGLIYPSDSAVHVRVTFSLVVFRPFIGEVITGSIHRSTPEGLWISLGFFQDIFVPPHF 113
Query: 118 MPDYRYVQAENPVFL 132
M D E+ +++
Sbjct: 114 MQDGSEWDEEHQLWV 128
>gi|449548373|gb|EMD39340.1| hypothetical protein CERSUDRAFT_134380 [Ceriporiopsis subvermispora
B]
Length = 234
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
+++I L +A R D+G + V L +GEG+VR G + + VVF + F+ F
Sbjct: 23 EQAITNELNKKYANR-VLHDVGLCVCVFDLSEVGEGKVRYGDGFLWYKVVFRLVVFRPFA 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
EVL V + G+ L G ++IY++ +P+
Sbjct: 82 SEVLLAKVKSSDEDGIRLTLGFFDDIYVSQMFLPE 116
>gi|357517541|ref|XP_003629059.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523081|gb|AET03535.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 220
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
R + L+ K + LG ++V + +I G + G + VVF+ I F+ F G
Sbjct: 50 REAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIFPGAGAPTYQVVFNLIMFRPFPG 109
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN 128
E++ V + GV L G E+IY+ MP Y ++N
Sbjct: 110 EIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYYISKN 151
>gi|45358003|ref|NP_987560.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|340623628|ref|YP_004742081.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
gi|44920760|emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|339903896|gb|AEK19338.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
Length = 187
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD+G+ L++ ++N+ +G + G F+ +T+ EV+DG + V++ G F+
Sbjct: 40 KDIGFILSIVDVDNVSDGSIIYGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI-EKDVVVRVIVIGTKWLEAER 159
+ GP++ + M D+ + + ++ K+ EK VR ++ E ++
Sbjct: 100 RLGPLDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAVSLREEKK 156
>gi|159904859|ref|YP_001548521.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C6]
gi|159886352|gb|ABX01289.1| DNA-directed RNA polymerase [Methanococcus maripaludis C6]
Length = 187
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD+G+ L++ ++N+ +G + G F+ +T+ EV+DG + V++ G F+
Sbjct: 40 KDIGFILSIVDVDNVSDGSIIYGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI-EKDVVVRVIVIGTKWLEAER 159
+ GP++ + M D+ + + ++ K+ EK VR ++ E ++
Sbjct: 100 RLGPLDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAVSLREEKK 156
>gi|110667301|ref|YP_657112.1| DNA-directed RNA polymerase subunit E' [Haloquadratum walsbyi DSM
16790]
gi|385802723|ref|YP_005839123.1| DNA-directed RNA polymerase subunit E [Haloquadratum walsbyi C23]
gi|109625048|emb|CAJ51465.1| DNA-directed RNA polymerase subunit E [Haloquadratum walsbyi DSM
16790]
gi|339728215|emb|CCC39351.1| DNA-directed RNA polymerase subunit E [Haloquadratum walsbyi C23]
Length = 194
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P QR V RLL D + +D+G ++V ++ +IGE
Sbjct: 1 MYKRVQLTDTVEVPPRHLADVTP--QR--VKRLLQDKLEGRMDEDIGSVVSVISVLDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V V + F ITF EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GAVLPGRAGVYYEAKFDAITFDPAMQEVVDGEVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + +G WL
Sbjct: 117 YLAYDGENQQLASTESNRTLGVGDSVRVRVVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEG 169
+A+R+ A + G
Sbjct: 177 QADRQANAATTEAG 190
>gi|325958359|ref|YP_004289825.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
gi|325329791|gb|ADZ08853.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
Length = 195
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+L K+ V +P + P+ + V +L++ K LG + V +E +G
Sbjct: 1 MYLISKIEDTVRIPPNRFED--PL--EDVAVEILNESYVGTIDKKLGLMVTVKEIEELGI 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G VVF+ + FK E+++G V ++ + G F++ GP++ + D
Sbjct: 57 GKVIMGDGAAYHDVVFNALFFKPELHEIVEGEVIEITEFGAFIRIGPMDGLVHVSQVTDD 116
Query: 121 YRYVQAENPVFLSEKNPK 138
Y + + +++ K
Sbjct: 117 YINYDGKRGALMGKESKK 134
>gi|357517543|ref|XP_003629060.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523082|gb|AET03536.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 187
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
R + L+ K + LG ++V + +I G + G + VVF+ I F+ F G
Sbjct: 50 REAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIFPGAGAPTYQVVFNLIMFRPFPG 109
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN 128
E++ V + GV L G E+IY+ MP Y ++N
Sbjct: 110 EIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYYISKN 151
>gi|410670177|ref|YP_006922548.1| DNA-directed RNA polymerase subunit E' [Methanolobus psychrophilus
R15]
gi|409169305|gb|AFV23180.1| DNA-directed RNA polymerase subunit E' [Methanolobus psychrophilus
R15]
Length = 188
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
R+ V L D + K LG +A+T ++ IGEG + G V + F I F
Sbjct: 23 RANVKNALRDKLEGRIDKALGAIVAITEIDAIGEGHILVGDGAVYYDATFDAIVFVPVIQ 82
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
EV++G V + + G F+ G ++ + D+ +N +S+ +
Sbjct: 83 EVIEGEVVETVDFGAFISIGAMDGLLHVSQITDDFMSYDGKNGRLVSKSGGR 134
>gi|261403582|ref|YP_003247806.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
vulcanius M7]
gi|261370575|gb|ACX73324.1| DNA-directed RNA polymerase [Methanocaldococcus vulcanius M7]
Length = 189
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +K+ V VP E G L+ +I L++ + R KD+G+ L++ +++IG+
Sbjct: 1 MYKILKIADVVKVPPEEF---GKDLKETIKKILMEKYEGR-LDKDIGFVLSIVDIKDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G PV+F + + E+++G V V++ G F++ GP++ + M D
Sbjct: 57 GKVVHGDGSAYHPVIFETLVYLPEMYELVEGEVVDVVEFGSFVRLGPLDGLVHVSQIMDD 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIVIGTKWLEAEREFQALVSL 167
Y + + ++ K I V R++ I L+AER+ + ++L
Sbjct: 117 YVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS---LKAERKRGSKIAL 163
>gi|300710150|ref|YP_003735964.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
gi|448297078|ref|ZP_21487126.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
gi|299123833|gb|ADJ14172.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
gi|445580260|gb|ELY34646.1| DNA-directed RNA polymerase subunit E' [Halalkalicoccus jeotgali
B3]
Length = 194
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V L V VPA L + + + RLL D + ++G + VT + ++GE
Sbjct: 1 MYKRVTLTDTVEVPARELGS----VTTDQIQRLLQDKLEGRMDSEVGSVVTVTEVRDVGE 56
Query: 61 GRV---RE-NTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
G V RE + G V + F +TF EV+DGTV +V++ G F+ GPV+ +
Sbjct: 57 GVVLPERERHEGSVFYEAEFDAVTFDPRMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQ 116
Query: 117 KMPDYRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
+Y AEN S E N + D VR ++
Sbjct: 117 ISDEYLSYDAENQQLASTESNRTLGVDDAVRARIV 151
>gi|405120013|gb|AFR94784.1| RNA polymerase II subunit 7 [Cryptococcus neoformans var. grubii
H99]
Length = 83
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 48 YFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVF 102
Y ++V T+ +IGEG++ +TG+ F ++ I K F+GEV+D V V K +F
Sbjct: 5 YIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNKASLF 59
>gi|337284806|ref|YP_004624280.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
gi|334900740|gb|AEH25008.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
Length = 188
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LA+ ++ +G+G + G VF + +K EV++G V G F+
Sbjct: 40 RDDGVILAILEVKEVGDGIIVPGDGATYHEAVFDVLVWKPEMHEVVEGIVVDAAPFGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP---KIEKDVVVRVIVIGTK 153
+ GP++ + M DY N F+ ++ K+ +V R+I I K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDERNKQFVGKEKKYLLKVGDEVRARIIAISDK 152
>gi|70606624|ref|YP_255494.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
DSM 639]
gi|449066846|ref|YP_007433928.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449069118|ref|YP_007436199.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920767|sp|P39466.2|RPOE_SULAC RecName: Full=DNA-directed RNA polymerase subunit E
gi|68567272|gb|AAY80201.1| DNA-directed RNA polymerase subunit E [Sulfolobus acidocaldarius
DSM 639]
gi|449035354|gb|AGE70780.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449037626|gb|AGE73051.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
Length = 183
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
I +++L + K KD+G L + + EG + G V F + + EV
Sbjct: 25 IAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEV 84
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK-IEKDVVVRV 147
++G V +V +GV++ GPV+ + D + + + EK+ K I+K VR
Sbjct: 85 IEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGEKSKKSIQKGDRVRA 144
Query: 148 IVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
++I + + R + ++++ +LG + N
Sbjct: 145 MIISAS-MSSGRLPRIALTMKQPYLGKIEWIN 175
>gi|73667834|ref|YP_303849.1| DNA-directed RNA polymerase subunit E' [Methanosarcina barkeri str.
Fusaro]
gi|72394996|gb|AAZ69269.1| DNA-directed RNA polymerase, subunit E' [Methanosarcina barkeri
str. Fusaro]
Length = 194
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
K LG +A+ + IGEG + G V + V F I F E+++G V + + GVF+
Sbjct: 40 KKLGSLVAICKIVEIGEGHILVGDGAVYYDVTFEAIMFVPELQEIIEGEVVETVGFGVFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
GP++ + D+ A+N +++ K
Sbjct: 100 GMGPMDGLLHVSQITDDFISYDAKNARLVTKNGGK 134
>gi|409081111|gb|EKM81470.1| hypothetical protein AGABI1DRAFT_35937 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196321|gb|EKV46249.1| hypothetical protein AGABI2DRAFT_70931 [Agaricus bisporus var.
bisporus H97]
Length = 227
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
+I L +A R D+G + V L +GEG+VR G + + VF + F+ F E
Sbjct: 25 AITAELNKKYANR-VLHDVGLCICVFDLTQVGEGKVRYGDGCLWYKTVFRMVIFRPFISE 83
Query: 88 VLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
V+ V + G+ L G ++IY+ + +P
Sbjct: 84 VVIAKVKSSDEDGIRLTMGFFDDIYIPTAYLP 115
>gi|401402842|ref|XP_003881348.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
gi|325115760|emb|CBZ51315.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
Length = 200
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 12 VVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVL 71
V+P + + + +L+R+I + L+ K + G +A L I +R G
Sbjct: 13 VLPEDQMKNQEEVLRRAIEEKYLN-----KVVANCGLAVAFYELRRIQSATIRSGDGSAR 67
Query: 72 FPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYR 122
+ V F+ + F+ F+GE+L+GT+ G+ + G +++Y+ + + + R
Sbjct: 68 YKVEFALVFFRPFQGEILEGTLMHSDTQGLRISLGFFQDVYVPAAALREPR 118
>gi|312136667|ref|YP_004004004.1| DNA-directed RNA polymerase, subunit e' [Methanothermus fervidus
DSM 2088]
gi|311224386|gb|ADP77242.1| DNA-directed RNA polymerase, subunit E' [Methanothermus fervidus
DSM 2088]
Length = 193
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
K LG+ +A+ +E+IG G+V G + V F+ + FK E+++G V ++ + G F+
Sbjct: 40 KKLGFMIAIKNIEDIGVGKVIIGDGAAYYDVTFNALFFKPELHEIIEGEVIEITEFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKD---VVVRVIVIGTKWL 155
+ GPV+ + DY +N + + ++ ++ K+ V R++ I TK L
Sbjct: 100 RIGPVDGLVHISQITDDYIDYDPKNCILVGKETKRVLKEGDKVRARIVAISTKQL 154
>gi|294495170|ref|YP_003541663.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
DSM 5219]
gi|292666169|gb|ADE36018.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
DSM 5219]
Length = 187
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ K +G +A+T ++ IGEG + G V + F I F EV++G V + ++ G
Sbjct: 37 RVDKKIGSVVAITDIDEIGEGHILVGDGAVYYDATFEAIMFIPTLQEVIEGEVVETVEFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI 139
F+ G ++ + D+ +N +S+ K+
Sbjct: 97 AFVSIGAMDGLLHVSQITDDFMSYDGKNGRLISKNVNKV 135
>gi|390596833|gb|EIN06234.1| hypothetical protein PUNSTDRAFT_106452 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 226
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++++++ L +A R D+G + V + GEG+VR G + + VVF + F
Sbjct: 19 GTPVEQALIAELNKKYANR-VLHDVGLCVCVFDISEAGEGKVRYGDGMLWYKVVFRLVVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+ F EV+ V + G+ + G ++IY+ +P
Sbjct: 78 RPFASEVILAKVKSSDEDGIRVSVGFFDDIYIPVMYLP 115
>gi|224002987|ref|XP_002291165.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220972941|gb|EED91272.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 183
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGITFKIF 84
R+ +VRLL + A + G+ + V + E I G + +TG V+F V ++ + + F
Sbjct: 23 RATIVRLLKEEVEGLALANYGFVVNVIEVPEEQIRSGIIEYDTGNVVFYVKYTALLLRPF 82
Query: 85 RGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
EV+D TV + + G F GP+ I+++ MP+
Sbjct: 83 INEVVDATVAQCNELGFFAYVGPL-RIFVSKHSMPE 117
>gi|66822507|ref|XP_644608.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|66822575|ref|XP_644642.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|122057759|sp|Q557J3.1|RPC8_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H
gi|60472717|gb|EAL70667.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60472766|gb|EAL70716.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 252
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 31 VRLLDDFARRKATK----DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
V+ ++D +K T + G F+A+ + G+ V G V F + FK F+G
Sbjct: 22 VQTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKG 81
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKN 136
EVL+G + K + + + G IYL ++P+ E ++ E N
Sbjct: 82 EVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEWN 131
>gi|14324700|dbj|BAB59627.1| DNA-directed RNA polymerase E' [Thermoplasma volcanium GSS1]
Length = 195
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 1 MFLKVKLPWNVVVP----AENLD-AKGPMLQRSIVVRLLDDFARRKATKDLGYF-LAVTT 54
M++ V+ + +P E+ D A + +RS+ +L+D + + Y +++ +
Sbjct: 4 MYMMVEDKYIARIPPDMLGEDYDKAVEEVTKRSLEGKLVDVVNEKTGVNEGKYLVISIIS 63
Query: 55 LENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLT 114
+ +GEG + G V V +S + F E++DG V V K G F+K E +
Sbjct: 64 TKAVGEGSIVHGDGGVYQEVKYSALVFYPEMQEIVDGEVVSVQKFGAFVKFSSFEGLLHI 123
Query: 115 CSKMPDYRYVQAENPVFL---SEKNPKIEKDVVVRVIVI 150
M D V EN F+ ++++ K+ V VR++ +
Sbjct: 124 SQIMDDRIDVDLENKRFIGKDTKRDLKVGDKVRVRIVAL 162
>gi|449436395|ref|XP_004135978.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
gi|449523449|ref|XP_004168736.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
Length = 226
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +LG ++V + ++ G + + G + VVF+ I F+ F GEV+ G V + ++G
Sbjct: 37 KVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENG 96
Query: 101 VFLKCGPVENIYLTCSKMP 119
+ + G E+IY+ MP
Sbjct: 97 LRISLGFFEDIYVPVELMP 115
>gi|409041829|gb|EKM51314.1| hypothetical protein PHACADRAFT_263362 [Phanerochaete carnosa
HHB-10118-sp]
Length = 226
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
Q++I L +A R D+G ++V L +GEG+VR G + + VVF + F+ F
Sbjct: 23 QQAITNELNKKYANR-VLHDVGLCVSVFDLAEVGEGKVRYGDGFLWYKVVFRLVVFRPFP 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
EV+ V + G+ L G +++Y+ +P+
Sbjct: 82 SEVILAKVKSSDEDGIRLTLGFFDDVYIPRIFLPE 116
>gi|13541317|ref|NP_111005.1| DNA-directed RNA polymerase subunit E' [Thermoplasma volcanium
GSS1]
Length = 192
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 1 MFLKVKLPWNVVVP----AENLD-AKGPMLQRSIVVRLLDDFARRKATKDLGYF-LAVTT 54
M++ V+ + +P E+ D A + +RS+ +L+D + + Y +++ +
Sbjct: 1 MYMMVEDKYIARIPPDMLGEDYDKAVEEVTKRSLEGKLVDVVNEKTGVNEGKYLVISIIS 60
Query: 55 LENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLT 114
+ +GEG + G V V +S + F E++DG V V K G F+K E +
Sbjct: 61 TKAVGEGSIVHGDGGVYQEVKYSALVFYPEMQEIVDGEVVSVQKFGAFVKFSSFEGLLHI 120
Query: 115 CSKMPDYRYVQAENPVFL---SEKNPKIEKDVVVRVIVI 150
M D V EN F+ ++++ K+ V VR++ +
Sbjct: 121 SQIMDDRIDVDLENKRFIGKDTKRDLKVGDKVRVRIVAL 159
>gi|395325654|gb|EJF58073.1| polymerase III polypeptide H [Dichomitus squalens LYAD-421 SS1]
Length = 220
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
+++I L +A R D+G + V L +GEG+VR G + + VVF F+ F
Sbjct: 23 EQAITNELNKKYANR-VLHDVGLCICVFDLAEVGEGKVRYGDGCLWYKVVFRLTVFRPFA 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
EV+ V + GV L G ++IY+ +P+
Sbjct: 82 SEVIIAKVKSSDEDGVRLTVGFFDDIYVPLVYLPE 116
>gi|336368541|gb|EGN96884.1| hypothetical protein SERLA73DRAFT_185115 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381332|gb|EGO22484.1| hypothetical protein SERLADRAFT_473379 [Serpula lacrymans var.
lacrymans S7.9]
Length = 222
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G + +++++ + +A R D+G + V L EG+VR G + + V+F + F
Sbjct: 19 GVLPEQALISEINKKYANR-VLHDVGMCICVFDLTEASEGKVRYGDGCLWYKVIFRMVVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+ F EV+ V + G+ L G +++Y+ S +P
Sbjct: 78 RPFASEVILAKVKSSDEDGIRLSVGFFDDMYIPLSYLP 115
>gi|402223542|gb|EJU03606.1| polymerase III polypeptide H [Dacryopinax sp. DJM-731 SS1]
Length = 238
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ D+G + + + EGRVR G + V F + F+ F GEVL G V + G
Sbjct: 37 RVLHDVGLCIVLFDILECSEGRVRFGDGCLWHKVTFRMVVFRPFVGEVLVGEVKGCAEEG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVF-----LSEKN-----PKIEKDVV-----V 145
V + G ++I++ +P + E+ VF LS+ PK E+ V +
Sbjct: 97 VQVSLGFFDDIHVPTRLLPPHTTWDPEDQVFFWAPQLSDGQDPLDIPKEERFTVDVGAKI 156
Query: 146 RVIVIGTKWLEAE 158
RV V G +++E E
Sbjct: 157 RVCVDGDEFVEEE 169
>gi|255073311|ref|XP_002500330.1| predicted protein [Micromonas sp. RCC299]
gi|226515593|gb|ACO61588.1| predicted protein [Micromonas sp. RCC299]
Length = 201
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 10 NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGE 69
NV + ENL P L+ + + ++ K KDLG + + + +I G V G
Sbjct: 11 NVKILPENLGK--PRLEA--ITQEIESLYIDKVIKDLGLVITLYEIVSIEGGTVYPGEGS 66
Query: 70 VLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD--------- 120
F V F + F+ F GE+++GT+ K K G+++ G +I++ M +
Sbjct: 67 AHFKVEFRVVVFRPFVGEIIEGTLKKADKTGLYVDIGFFSDIFVPEHLMQEPSVFDEDEQ 126
Query: 121 -YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALV---SLEG 169
+ ++ + +F+ + P VR+ + G K+ + R LV +LEG
Sbjct: 127 LWVWMYEDAKMFMDLEEP-------VRIRIQGIKFPDQPRTSDELVGRTALEG 172
>gi|18976628|ref|NP_577985.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus DSM
3638]
gi|397650754|ref|YP_006491335.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
gi|18892197|gb|AAL80380.1| DNA-directed RNA polymerase, subunit e' [Pyrococcus furiosus DSM
3638]
gi|393188345|gb|AFN03043.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
Length = 189
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD G L++ +++I +G + G VVF + ++ EV++G V V+ G F+
Sbjct: 40 KDEGVILSILEVKDIKDGIIIPGDGATYHEVVFDVLVWEPKIHEVVEGYVADVMPFGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP---KIEKDVVVRVIVIGTK 153
+ GP++ + M DY N F+ ++ KI V R+I I K
Sbjct: 100 RIGPIDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDLVRARIINISAK 152
>gi|336121222|ref|YP_004575997.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334855743|gb|AEH06219.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 189
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD+G+ L++ ++ IGEG+V G P +F + + EV++G V V++ GVF+
Sbjct: 40 KDMGFILSIGEIKEIGEGKVIYGDGAAYHPAIFDVLCYMPELYEVVEGEVVDVVEFGVFI 99
Query: 104 KCGPVENIYLTCSKMPDY-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159
+ GP++ + M DY Y + E IEK VR ++ EA++
Sbjct: 100 RLGPLDGLIHISQIMDDYVSYDPKREAIIGKETGRVIEKGDRVRARIVAVSLREAKK 156
>gi|145347797|ref|XP_001418348.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578577|gb|ABO96641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 208
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 47 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG 106
G + + ++ NI G V G V F V F + FK F GEV++GT+ HG + G
Sbjct: 45 GLCVTLYSITNISGGTVLAGEGCVCFEVTFKVVLFKPFAGEVIEGTLLSADAHGAHVSIG 104
Query: 107 PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVV---VRVIVIGTKWLEAEREFQA 163
++I++ + M ++ V++ + + ++ + V R V+ ++ E+ + +
Sbjct: 105 FFKDIFVPPTNMQAPSEYDDDSKVWMWDYDGELMEMKVGERFRFKVVAVRFPESPKTAEE 164
Query: 164 LVSL 167
L SL
Sbjct: 165 LASL 168
>gi|15920582|ref|NP_376251.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
gi|15621365|dbj|BAB65360.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
Length = 183
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
I +++L + K KDLG LAV + EG + G V F + F EV
Sbjct: 25 IALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYIIFGDGATYHEVSFEMLAFVPIIQEV 84
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKD---VVV 145
++G V++V +GV++ GPV+ + D + + E++ KI + V
Sbjct: 85 VEGEVNQVDNYGVYVNIGPVDGLAHISQITDDNLKFDQNRGILIGERSKKIIQKGDRVRA 144
Query: 146 RVIVIGT 152
R+I + T
Sbjct: 145 RIISVST 151
>gi|330804580|ref|XP_003290271.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
gi|325079597|gb|EGC33189.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
Length = 234
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 35 DDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDG 91
D+ ++ +K D G F+A+ + G+ V G V F + FK F+GE+++G
Sbjct: 27 DEIEKKYVSKVVLDGGLFIALYDILGTGDSYVYSGDGAAHLMVRFRMVVFKPFKGEIMEG 86
Query: 92 TVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+ K K V + G + IYL ++P
Sbjct: 87 VIKKSTKDQVQITIGFYDEIYLNPIELP 114
>gi|322368285|ref|ZP_08042854.1| DNA-directed RNA polymerase subunit E' [Haladaptatus
paucihalophilus DX253]
gi|320552301|gb|EFW93946.1| DNA-directed RNA polymerase subunit E' [Haladaptatus
paucihalophilus DX253]
Length = 190
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ + +L V VP + L P L V RLL D + +D+G ++VT + +IGE
Sbjct: 1 MYKRARLKDTVEVPPQFLADVTPEL----VKRLLQDKLEGRMDEDVGSVVSVTEVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DG V +V+ G F+ GPV+ + L S++ D
Sbjct: 57 GAVLPNRPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGL-LHVSQISD 115
>gi|397575684|gb|EJK49830.1| hypothetical protein THAOC_31253 [Thalassiosira oceanica]
Length = 183
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTL--ENIGEGRVRENTGEVLFPVVFSGITFKIF 84
+ +VRLL + A + G+ + V + E I G + +TG V+F V ++ + + F
Sbjct: 23 KDTIVRLLKEEVEGLALANYGFVVNVIEVPEEQIRSGVIEYDTGNVVFYVKYTALMLRPF 82
Query: 85 RGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
EV+D TV + + G F GP+ I+++ MP+
Sbjct: 83 VNEVIDATVAQCNELGFFAYVGPL-RIFVSKHSMPE 117
>gi|415999|emb|CAA53164.1| DNA-directed RNA polymerase [Sulfolobus acidocaldarius]
Length = 248
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
I +++L + K KD+G L + + EG + G V F + + EV
Sbjct: 25 IAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEV 84
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK-IEKDVVVRV 147
++G V +V +GV++ GPV+ + D + + + EK+ K I K VR
Sbjct: 85 IEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGEKSKKSITKGDRVRA 144
Query: 148 IVIGTKWLEAEREFQALVSLEGDFLG 173
++I + + + R + ++++ +LG
Sbjct: 145 MII-SASMSSGRLPRIALTMKQPYLG 169
>gi|392585924|gb|EIW75262.1| hypothetical protein CONPUDRAFT_169647 [Coniophora puteana
RWD-64-598 SS2]
Length = 229
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ ++G +AV L + G GRVR G + + V F + F+ F GEV+ V + G
Sbjct: 37 RVLHNVGLCVAVFDLVSAGSGRVRYGDGLLYYKVAFRMVVFRPFVGEVVIARVRSADEEG 96
Query: 101 VFLKCGPVENIYLTCSKMP 119
V L G +++Y+ + +P
Sbjct: 97 VRLTMGFFDDMYVPLAYLP 115
>gi|389745440|gb|EIM86621.1| polymerase III polypeptide H [Stereum hirsutum FP-91666 SS1]
Length = 220
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
+++++ L +A K D+G + V + GEG+VR G + + VVF F+ F
Sbjct: 23 EQALITELNKKYAN-KVLHDVGLCICVFDIAEAGEGKVRYGDGFLWYAVVFRLTVFRPFP 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
EV+ V + G+ L G E++++ + +P
Sbjct: 82 SEVILAKVKSSDEDGIHLSVGFFEDMWIPLNYLP 115
>gi|448406868|ref|ZP_21573300.1| DNA-directed RNA polymerase subunit E' [Halosimplex carlsbadense
2-9-1]
gi|445676674|gb|ELZ29191.1| DNA-directed RNA polymerase subunit E' [Halosimplex carlsbadense
2-9-1]
Length = 192
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 31/186 (16%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V L V VP +L P L V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVTLRDTVEVPPAHLAEVTPGL----VKRLLQDKLEGRMDEDVGSVVSVIDVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V V F F +TF EV+DG V +V+ G F+ GPV+ + L S++ D
Sbjct: 57 GAVVPGQEGVYFTAEFDALTFDPQMQEVVDGEVVEVVNFGAFVGIGPVDGL-LHVSQISD 115
Query: 121 YRYVQAENPVFLS------------------------EKNPKIEK-DVVVRVIVIGTK-W 154
E LS E+NP+ K + + + +G W
Sbjct: 116 EYLAYDEEGQMLSSRDSNRTLGVGDAVRARIVTKSIDERNPRDSKIGLTAKQVGLGKHGW 175
Query: 155 LEAERE 160
LE ER+
Sbjct: 176 LEEERQ 181
>gi|134046224|ref|YP_001097709.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C5]
gi|132663849|gb|ABO35495.1| DNA-directed RNA polymerase, subunit E' [Methanococcus maripaludis
C5]
Length = 187
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD+G+ L++ ++ + +G + G F+ +T+ EV+DG + V++ G F+
Sbjct: 40 KDIGFILSIVDVDEVSDGSIIYGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI-EKDVVVRVIVIGTKWLEAER 159
+ GP++ + M D+ + + ++ K+ EK VR ++ E ++
Sbjct: 100 RLGPLDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAVSLREEKK 156
>gi|169868152|ref|XP_001840650.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
gi|116498254|gb|EAU81149.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
Length = 227
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
+ +I L +A R D+G + V L +G+GRVR G + + V F F+ F
Sbjct: 23 EEAITAELNKKYANR-VLHDVGLCICVFDLTEVGDGRVRYGDGFLWYKVTFRMTVFRPFV 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
EV+ V + G+ L G ++IY+ +P
Sbjct: 82 SEVVVAKVKSSDERGIRLTMGFFDDIYIPAIYLP 115
>gi|74025878|ref|XP_829505.1| RNA polymerase-like protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834891|gb|EAN80393.1| RNA polymerase-like protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261335510|emb|CBH18504.1| RNA polymerase subunit, putative [Trypanosoma brucei gambiense
DAL972]
Length = 190
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Query: 1 MFLKVKLPWNVVVPAENLD--------------AKGPMLQRSIVVRLLDDFARRKATKDL 46
MF K+KL N+ V L+ +G L S+ L AR
Sbjct: 1 MFYKMKLERNIKVEPHLLERTLHRHLEEYLRKAVEGTPLHLSLGNALRSGLARTNQNSS- 59
Query: 47 GYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLK 104
+AV + N EGRV ++ G V F V + G+ FK+ RGEV+D V V + G +
Sbjct: 60 AVIIAVLDILNTSSLEGRVLDD-GSVSFFVKYEGLVFKLHRGEVIDVIVSSVEREGWWGD 118
Query: 105 CGPVENIYLTCSKMPDYRYVQAEN--PVFLSEKNPK-IEKDVVVRVIVIGTKWLEAEREF 161
V +Y++ +M + +++ +++++ + +++ +VRV V+
Sbjct: 119 VMGVGRMYISRGQMGNEWVYESDGMRGIWITKDGARSVKEGEIVRVRVVAET--PQSEGV 176
Query: 162 QALVSLEGDFLGPV 175
A+ S+ G++LGP+
Sbjct: 177 LAVGSMVGNYLGPL 190
>gi|389860871|ref|YP_006363111.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
gi|388525775|gb|AFK50973.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
Length = 175
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 43 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVF 102
T + G +A+ ++ GR+ G V F+ +TF F EV++G V V + G+F
Sbjct: 39 TSNAGLVVAILDVKVSEYGRIIHGDGATYHDVEFTALTFDPFLKEVVEGEVLNVTESGIF 98
Query: 103 LKCGPVENIYLTCSKMPDYR--YVQAENPVFLSEKNPKIEKDVVVRV 147
+ GP++ ++ ++ D R Y + + L IEK VV+
Sbjct: 99 IDLGPLDG-FIYIGQVSDERAEYDSSRQALLLKGGKKTIEKGDVVKA 144
>gi|345005890|ref|YP_004808743.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
gi|344321516|gb|AEN06370.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
Length = 193
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP NL + V LL D + +D+G ++V + +IG+
Sbjct: 1 MYKRVRLKDTVEVPPRNL----ADVTEERVQALLQDKLEGRMDEDVGSVVSVVKIHDIGD 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F IT+ EV+DGTV +V++ G F+ GP++ + +
Sbjct: 57 GAVLPNRPGVYYEADFDAITYDPDMQEVVDGTVVEVVEFGAFVGIGPIDGLLHVSQISDE 116
Query: 121 YRYVQAEN-PVFLSEKNPKIEKDVVVRVIVI 150
Y EN + SE + + D VRV ++
Sbjct: 117 YLAYDGENQQLSSSESSDTLGVDDAVRVRIV 147
>gi|41615160|ref|NP_963658.1| DNA-directed RNA polymerase subunit E' [Nanoarchaeum equitans
Kin4-M]
gi|40068884|gb|AAR39219.1| NEQ370 [Nanoarchaeum equitans Kin4-M]
Length = 181
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 19 DAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSG 78
D K ++ +I LL + K K LG+ L++ + + EG + N G + + V F
Sbjct: 17 DLKEKTIEEAIKNALLKQY-EGKINKQLGWVLSILDILDKSEGYLGYNDGGIYYKVRFKV 75
Query: 79 ITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
+T+K EV G + ++ G ++ GP + + + S++ D +++ V K K
Sbjct: 76 LTWKPILKEVTLGIISNIVDFGAYVNIGPTDGL-IHISQIMDDIVDYSKDKVLAGRKTKK 134
Query: 139 IEK--DVVVRVIV------IGTK 153
I K D+V IV IGTK
Sbjct: 135 ILKIEDIVKAKIVGISIKPIGTK 157
>gi|341899564|gb|EGT55499.1| hypothetical protein CAEBREN_06283 [Caenorhabditis brenneri]
Length = 214
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
Q+ ++ + L++ + DLG + V + IG+ + G+ V F I F+ F
Sbjct: 22 QQMVIKKRLNERLANRVVPDLGLCICVYDISEIGDSYILPGEGDCRARVTFRMIVFRPFV 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
EV++ V + G+ L E+I++ K+P+ + E V+ E
Sbjct: 82 DEVIEAKVIGSSRQGLTLSIEFFEDIFVPAEKLPEPHVFEEEGQVWYWE 130
>gi|150400166|ref|YP_001323933.1| DNA-directed RNA polymerase subunit E' [Methanococcus vannielii SB]
gi|150012869|gb|ABR55321.1| DNA-directed RNA polymerase [Methanococcus vannielii SB]
Length = 188
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 30 VVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVL 89
V R+L D KD+GY L++ + + +G + G F +T+ EV+
Sbjct: 26 VKRVLMDKYEGILDKDVGYVLSIVDINQVSDGSIIYGDGAAYHETKFDVLTYVPELHEVV 85
Query: 90 DGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI-EKDVVVRVI 148
+G + V++ G F++ GP++ + M D+ + + ++ K+ EK VR
Sbjct: 86 EGEIVDVVEFGAFIRLGPLDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDFVRAR 145
Query: 149 VIGTKWLEAER 159
++ E ++
Sbjct: 146 IVAVSLKEEKK 156
>gi|332796396|ref|YP_004457896.1| DNA-directed RNA polymerase RpoE [Acidianus hospitalis W1]
gi|332694131|gb|AEE93598.1| DNA-directed RNA polymerase, RpoE [Acidianus hospitalis W1]
Length = 175
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +K V +P E G L + I + +L + K KDLG L V + + E
Sbjct: 1 MFKIIKAKGVVRIPPEYF---GEELDK-IALEILKSEYQDKIFKDLGLVLGVLSAKASEE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++ G V F + + EV++GTV +V +G+++ GP++ + D
Sbjct: 57 GQIIFGDGATYHEVEFELLAYVPALQEVVEGTVAEVDNYGIYVNLGPMDGLVHISQIADD 116
Query: 121 YRYVQAENPVFLSEKNPKI-EKDVVVRVIVI 150
+ V + EK+ K+ +K +VR ++
Sbjct: 117 TFKFDSTRGVLIGEKSKKVLQKGDLVRARIV 147
>gi|55379439|ref|YP_137289.1| DNA-directed RNA polymerase subunit E' [Haloarcula marismortui ATCC
43049]
gi|344210409|ref|YP_004794729.1| DNA-directed RNA polymerase subunit E' [Haloarcula hispanica ATCC
33960]
gi|448628572|ref|ZP_21672341.1| DNA-directed RNA polymerase subunit E' [Haloarcula vallismortis
ATCC 29715]
gi|448638902|ref|ZP_21676572.1| DNA-directed RNA polymerase subunit E' [Haloarcula sinaiiensis ATCC
33800]
gi|448648753|ref|ZP_21679818.1| DNA-directed RNA polymerase subunit E' [Haloarcula californiae ATCC
33799]
gi|448679971|ref|ZP_21690410.1| DNA-directed RNA polymerase subunit E' [Haloarcula argentinensis
DSM 12282]
gi|448683330|ref|ZP_21692219.1| DNA-directed RNA polymerase subunit E' [Haloarcula japonica DSM
6131]
gi|55232164|gb|AAV47583.1| DNA-directed RNA polymerase subunit E' [Haloarcula marismortui ATCC
43049]
gi|343781764|gb|AEM55741.1| DNA-directed RNA polymerase subunit E' [Haloarcula hispanica ATCC
33960]
gi|445758103|gb|EMA09428.1| DNA-directed RNA polymerase subunit E' [Haloarcula vallismortis
ATCC 29715]
gi|445763234|gb|EMA14437.1| DNA-directed RNA polymerase subunit E' [Haloarcula sinaiiensis ATCC
33800]
gi|445769619|gb|EMA20692.1| DNA-directed RNA polymerase subunit E' [Haloarcula argentinensis
DSM 12282]
gi|445774497|gb|EMA25513.1| DNA-directed RNA polymerase subunit E' [Haloarcula californiae ATCC
33799]
gi|445784003|gb|EMA34825.1| DNA-directed RNA polymerase subunit E' [Haloarcula japonica DSM
6131]
Length = 192
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP L P L V RLL + + +D+G ++V + +IG
Sbjct: 1 MYKRVRLRDTVEVPPRFLAEVSPGL----VKRLLQEKLEGRMDEDVGSVVSVIEVHDIGT 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVLPNKPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFIGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + + +G WL
Sbjct: 117 YLAYDEENQQLASRESNRTLTVGDAVRARIVTKSIDERNPRDSKIGLTAKQVGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
+ ERE + + GD
Sbjct: 177 QEERERREGTAEAGD 191
>gi|336273894|ref|XP_003351701.1| hypothetical protein SMAC_00243 [Sordaria macrospora k-hell]
gi|380095980|emb|CCC06027.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 193
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K + +G F+ + + EG++ TG V V F + F+ F+ EV+ + +
Sbjct: 36 NKVVQKVGLFICLWDVTWTSEGQIGHGTGLVNVNVEFEMVVFRPFKHEVMLARITHQTEE 95
Query: 100 GVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK---IEKDVVVRVIVIGTKW 154
G++L +I++ +++PD V++ ++ + + + +VR VIG +W
Sbjct: 96 GIYLGMDFFNDIFVPAAELPDNSEFDTTEKVWVWKEEGQELYYDNNEMVRFRVIGEEW 153
>gi|255513911|gb|EET90176.1| DNA-directed RNA polymerase [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 195
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K KD+G +A+ +++I +G + V + +T+ GEV+ G V ++++ G
Sbjct: 37 KIDKDIGLIVAIFGIKDITDGTIYPGDPSTHHGVEYDALTYMPKVGEVVAGDVSEMVEFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK---DVVVRVIVIGTKWLEA 157
F++ GP++ + D+ + F+S+K+ K K V +V + K +
Sbjct: 97 AFVRMGPMDGLVHVSQIAGDFLSFDRKTQTFVSKKSGKTLKKGDSVYAKVSTVSIK--SS 154
Query: 158 EREFQALVSLEGDFLG 173
++ + +++ D LG
Sbjct: 155 VKDSKIALTMRSDGLG 170
>gi|221055818|ref|XP_002259047.1| RNA polymerase Rpb7 [Plasmodium knowlesi strain H]
gi|193809118|emb|CAQ39820.1| RNA polymerase Rpb7, putative [Plasmodium knowlesi strain H]
Length = 186
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +++G + + + + + + TGE+ F V+F + F+ F E+++G V +G
Sbjct: 37 KVLQNVGLCVGLYDILEVKNREILKGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNG 96
Query: 101 VFLKCGPVENIYLTCSKMPD 120
+ + G ENI + C+ + +
Sbjct: 97 IIISIGFFENIRVNCANLKE 116
>gi|374633213|ref|ZP_09705580.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
gi|373524697|gb|EHP69574.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
Length = 176
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF V+ V +P + GP+ I + +L + + + KDLG L VT + E
Sbjct: 1 MFKLVRARGVVRIPPDQFG--GPL--DVIALDILKNEYQERLFKDLGLVLTVTKAKVSEE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V F +TF EV++G + +V +GV++ GP++ + + S++ D
Sbjct: 57 GMIVFGDGATYHEVEFELLTFSPIIQEVIEGDITQVDNYGVYVNMGPMDGL-VHVSQIGD 115
Query: 121 --YRYVQAENPVFLSEKNPKIEKD---VVVRVIVIGT 152
YR+ Q + E++ K+ + V R++ I T
Sbjct: 116 DNYRFDQIRG-TLVGERSKKVFQKGDFVRARIMTIST 151
>gi|256810821|ref|YP_003128190.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus fervens
AG86]
gi|256794021|gb|ACV24690.1| DNA-directed RNA polymerase [Methanocaldococcus fervens AG86]
Length = 187
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 11 VVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEV 70
V VP E G L+ +I L++ + R KD+G+ L++ ++ +G+G+V G
Sbjct: 11 VRVPPEEF---GKDLKETIKKILIEKYEGR-LDKDVGFILSIVDVKEVGDGKVVHGDGSA 66
Query: 71 LFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPV 130
PVVF + + E+++G V V++ G F++ GP++ + M DY +
Sbjct: 67 YHPVVFETLVYVPEMYELVEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREA 126
Query: 131 FLSEKNPK---IEKDVVVRVIVIGTKWLEAEREFQALVSL 167
+ ++ K I V R++ I L+AER+ + ++L
Sbjct: 127 IIGKETGKVLEIGDYVRARIVAIS---LKAERKRGSKIAL 163
>gi|389583597|dbj|GAB66331.1| RNA polymerase Rpb7 N-terminal domain containing protein, partial
[Plasmodium cynomolgi strain B]
Length = 186
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +++G + + + + + + TGE+ F V+F + F F E+++G V +G
Sbjct: 37 KVLQNVGLCVGLYDILEVKNREILKGTGEIRFDVIFRLVYFHPFENEIIEGFVKNSDSNG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENP-VFLSEKNPKI--EKDVVVRVIVIGT 152
+ + G ENI + C+ + + + E F + + K KD ++RV V+ T
Sbjct: 97 IIISIGFFENIRVNCANLREPKEFDMEKKEWFWTYEGIKFFYTKDELIRVRVLDT 151
>gi|17566938|ref|NP_505625.1| Protein RPC-25 [Caenorhabditis elegans]
gi|3881812|emb|CAA94858.1| Protein RPC-25 [Caenorhabditis elegans]
Length = 239
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
Q+ ++ + L++ K DLG + V + IG+ + G+ V F I F+ F
Sbjct: 22 QQIVIKKRLNERLANKIIPDLGLCICVYDINEIGDSYILPGEGDCRARVKFRMIVFRPFV 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
EV++ V + G+ L E+I++ K+P+ + E V+ E
Sbjct: 82 DEVIEAKVIGSSRQGLCLTIQFFEDIFVPAEKLPEPHVFEEEGQVWYWE 130
>gi|397774282|ref|YP_006541828.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|397683375|gb|AFO57752.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
Length = 179
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 13 VPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLF 72
VP E L P V RLL D + +++G ++VT + +IGEG V N V +
Sbjct: 3 VPPEELGDVSP----DRVKRLLQDKLEGRMDEEVGSVVSVTEVHDIGEGTVLPNRPGVYY 58
Query: 73 PVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFL 132
F +TF EV+DGTV +V++ G F+ GPV+ + +Y EN
Sbjct: 59 EAEFDAVTFDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDEYLAFDGENQQLA 118
Query: 133 SEKNPK---IEKDVVVRVIV 149
S ++ + +E V R++
Sbjct: 119 SNESARSLGVEDAVRARIVT 138
>gi|156098288|ref|XP_001615176.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax Sal-1]
gi|148804050|gb|EDL45449.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax]
Length = 186
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +++G + + + + + + TGE+ F V+F + F+ F E+++G V +G
Sbjct: 37 KVLQNVGLCVGLYDILEVKNREILKGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNG 96
Query: 101 VFLKCGPVENIYLTCSKM 118
+ + G ENI + C+ +
Sbjct: 97 IIISIGFFENIRVNCANL 114
>gi|302686598|ref|XP_003032979.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
gi|300106673|gb|EFI98076.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
Length = 228
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
Q +I+ L +A R ++G + V L EG+VR G + + VVF + F+ F
Sbjct: 23 QEAIITELNKKYANR-VLHNVGLGICVFDLSQASEGKVRYGDGMLWYKVVFRLVVFRPFT 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
EV+ G V + G+ + +++Y+ +P
Sbjct: 82 SEVVLGKVKSSDEDGIRVSLNFFDDVYIPAMYLP 115
>gi|448664157|ref|ZP_21683960.1| DNA-directed RNA polymerase subunit E' [Haloarcula amylolytica JCM
13557]
gi|445774802|gb|EMA25816.1| DNA-directed RNA polymerase subunit E' [Haloarcula amylolytica JCM
13557]
Length = 192
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 29/195 (14%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP L P L V RLL + + +D+G ++V + +IG
Sbjct: 1 MYKRVRLRDTVEVPPRFLAEVSPGL----VKRLLQEKLEGRMDEDVGSVVSVIEVHDIGT 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F +TF EV+DG V +V+ G F+ GPV+ + +
Sbjct: 57 GAVLPNKPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFIGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + + +G WL
Sbjct: 117 YLAYDEENQQLASRESNRTLTVGDAVRARIVTKSIDERNPRDSKIGLTAKQVGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
+ ERE + + GD
Sbjct: 177 QEERERREGTAEVGD 191
>gi|145505393|ref|XP_001438663.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405835|emb|CAK71266.1| unnamed protein product [Paramecium tetraurelia]
Length = 184
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 45 DLGYFLAVTTLENIGE------GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLK 98
D+GY + +T N + + E G V + F I FK+ E++D V K
Sbjct: 43 DVGYIICITKCMNYNQHMDEQIDALIEEDGTVRVVIKFEAIVFKLQEKEIVDVEVSKCEA 102
Query: 99 HGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA 157
VF K GP++ I + K+P ++ Y N + E I++ +RV V T + +
Sbjct: 103 QAVFAKLGPIDFI-IPRDKLPANFTY---SNESYKEEDEEVIKQGTKLRVQVQKTNYKQG 158
Query: 158 EREFQALVSLEGDFLGPV 175
+ +A L GD L +
Sbjct: 159 --KLRAFAHLTGDNLDNI 174
>gi|374724743|gb|EHR76823.1| DNA-directed RNA polymerase subunit E [uncultured marine group II
euryarchaeote]
Length = 183
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ V + +PAE + KG L I + F R ++ + L T E +G
Sbjct: 1 MYKIVSREDTIRIPAEYM-RKGASLNDHIDRLSMTAFEGRFDEENR-FILLTTNHEPLGR 58
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
GR+ G + V F + F + EV++G V +V + G F++ GP+E + M D
Sbjct: 59 GRIIHGDGAIYQRVRFDAVLFCMEDYEVVEGAVSEVNEFGAFVRIGPMEALLHKSQIMDD 118
>gi|424812204|ref|ZP_18237444.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756426|gb|EGQ40009.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
Length = 185
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 10 NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGE 69
V +P E+L G LQ S+ L A R D+G F+AV + + G +R
Sbjct: 6 TVRIPPEHL---GDDLQSSVEDGLRSTLAGR-IEPDVGVFVAVEEVNTVEGGEIRPEDAG 61
Query: 70 VLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENP 129
V + V F + F+ EV+ G + G F++ GP + + M +Y E
Sbjct: 62 VHYDVEFQALVFEPELHEVVRGESVDLTSFGAFIRIGPFDGLCHVSQVMDEYVDFDEEAT 121
Query: 130 VFLSEKNPK---IEKDVVVRVIVI 150
+ +E++ VV R+I +
Sbjct: 122 MLKAEESGHSLATGDTVVTRIIAV 145
>gi|291333476|gb|ADD93176.1| putative RNA polymerase Rpb7 N terminal domain protein [uncultured
archaeon MedDCM-OCT-S06-C18]
Length = 184
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ V + +PAE + KG L + I +D F K + + L + IG
Sbjct: 1 MYKVVTKEDTIRIPAEYM-RKGQSLDQHIDRLSMDAF-EGKFDDENRFVLVTNNHKTIGR 58
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVE 109
GR+ G + V F + F + EV++G V +V + G F++ GP+E
Sbjct: 59 GRIIHGDGAIYQRVQFDAVLFCMDDQEVVEGAVSEVNEFGAFVRIGPME 107
>gi|320165968|gb|EFW42867.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 207
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 15/133 (11%)
Query: 33 LLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVL 89
+ D+ R A K ++G + + L +G+ + + G VVF I F+ F GEV+
Sbjct: 26 IADEINRLYANKVVLNIGLCICLYDLTEVGDAYIVSSDGSTRTEVVFRLIVFRPFEGEVV 85
Query: 90 DGTVHKVLKHGVFLKCG--------PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
GT+ + + G+ + G P EN+ PD + E +E+ ++E
Sbjct: 86 SGTIRRSIPSGIIVNIGTFFDDVFIPAENLQPGTIFNPDLQ----EFVWTFAEQELRMEA 141
Query: 142 DVVVRVIVIGTKW 154
D +R V+ ++
Sbjct: 142 DSRIRFRVVADRF 154
>gi|170101368|ref|XP_001881901.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643256|gb|EDR07509.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 238
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
+++ + +A R DLG + + L GEG+VR G + + VVF + F+ F E
Sbjct: 25 ALIAEINKKYANR-VLHDLGLCVCLFDLVQAGEGKVRYGDGFLWYKVVFRMVVFRPFTSE 83
Query: 88 VLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
V+ V + G+ L G +++++ + +P
Sbjct: 84 VIIAKVKSSDEDGIRLTIGFFDDMHIPAAYLP 115
>gi|348564204|ref|XP_003467895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cavia
porcellus]
Length = 209
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 63 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 118
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV G+F + GP+ S +
Sbjct: 119 GVIQPGRGFVLYPV-------------------------GLFTEIGPMSCFISRHSIPSE 153
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 154 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 209
>gi|258575729|ref|XP_002542046.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237902312|gb|EEP76713.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 199
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLS 133
++ I +K F+GE +D V V G+F + GP+ P+ ++ A P +
Sbjct: 1 MYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTD 60
Query: 134 EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+ IEK +R+ +IG + R A+ S++ D+LG
Sbjct: 61 NADQVIEKGTNLRIKLIGLR--NDVRNMFAIGSIKEDYLG 98
>gi|302814541|ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 23/154 (14%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K KDLG +++ +++I G V G + V F + F+ F GE+L + K K+G
Sbjct: 37 KVVKDLGLCVSLYDIQSIEGGFVFPGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNG 96
Query: 101 VFLKCGPVENIYLTCSKMPD----------YRYVQAENPVFLSEKNPKIEKDVVVRVIVI 150
+ L G E+I + ++ + + EN +F+ +E++V RV+ +
Sbjct: 97 LVLSMGFFEDIIVPHHQLQQPSKFDENEKLWVWNYQENEMFMD-----LEEEVRFRVLKV 151
Query: 151 GTK--WLEAEREFQALVSLE------GDFLGPVS 176
LE ER+ Q +E D LG VS
Sbjct: 152 RYPPIPLEQERDAQPFAPMEVIGDINSDGLGLVS 185
>gi|150400715|ref|YP_001324481.1| DNA-directed RNA polymerase subunit E' [Methanococcus aeolicus
Nankai-3]
gi|150013418|gb|ABR55869.1| DNA-directed RNA polymerase [Methanococcus aeolicus Nankai-3]
Length = 195
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD G+ +++ + IG G+V G P +F + ++ E+++G + V++ G+F+
Sbjct: 40 KDFGFIMSIGDIGEIGGGKVVYGDGAAYHPAIFDLLCYEPELYEIIEGEIVDVVEFGLFV 99
Query: 104 KCGPVENIYLTCSKMPDY-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159
+ GP++ + M D+ Y + E IEK VR ++ EA+R
Sbjct: 100 RLGPLDGLIHISQIMDDFVSYDPQRGAIIGKESGKVIEKGDKVRARIVAISLREAKR 156
>gi|350296038|gb|EGZ77015.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
[Neurospora tetrasperma FGSC 2509]
Length = 193
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K + +G F+ + + EG++ +G V V F + F+ F+ EV+ + +
Sbjct: 36 NKVVQKVGLFVCLWDVTWTSEGQIGHGSGLVNVNVEFEMVVFRPFKHEVILARITHQTEE 95
Query: 100 GVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK---IEKDVVVRVIVIGTKW 154
G++L +I++ +++PD V++ ++ + + + +VR VIG +W
Sbjct: 96 GIYLGMDFFNDIFVPAAELPDNSEFDTTEKVWVWKEEGQELYFDNNEMVRFRVIGEEW 153
>gi|254574134|ref|XP_002494176.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|238033975|emb|CAY71997.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|328354004|emb|CCA40401.1| DNA-directed RNA polymerase III subunit C25 [Komagataella pastoris
CBS 7435]
Length = 200
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K LG F++V L I +G ++ G V F GI +K F GEVL G + K
Sbjct: 36 NKVIPKLGLFVSVWDLIEIQDGLLKPGDGATFITVKFRGIIWKPFVGEVLTGWIKKNTPE 95
Query: 100 GVFLKCGPVENIYLTCS 116
G+ + E+I++ S
Sbjct: 96 GIKVTMEFFEDIFIPKS 112
>gi|146304987|ref|YP_001192303.1| DNA-directed RNA polymerase subunit E' [Metallosphaera sedula DSM
5348]
gi|145703237|gb|ABP96379.1| DNA-directed RNA polymerase, subunit E' [Metallosphaera sedula DSM
5348]
Length = 176
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 7/181 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF VK V +P E G L ++ + +L++ + + KDLG L+V + E
Sbjct: 1 MFKVVKARGVVRIPPELF---GEPLNKT-AIEILNNEYKERLFKDLGLVLSVIRADVNEE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V F +TF EV++G + +V +G+++ GP++ + + S++ D
Sbjct: 57 GMIIFGDGATYHEVEFELLTFSPMIQEVIEGDITQVDNYGIYVNMGPMDGL-VHVSQIGD 115
Query: 121 YRY-VQAENPVFLSEKNPK-IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVSCE 178
Y + + + EK+ K +K +VR ++ + R + +++ LG V
Sbjct: 116 DNYKFDSVRGILIGEKSKKTFQKGDMVRARIMTISSTASNRLPRIGLTMRQMGLGKVERR 175
Query: 179 N 179
N
Sbjct: 176 N 176
>gi|429216710|ref|YP_007174700.1| DNA-directed RNA polymerase subunit E' [Caldisphaera lagunensis DSM
15908]
gi|429133239|gb|AFZ70251.1| DNA-directed RNA polymerase subunit E' [Caldisphaera lagunensis DSM
15908]
Length = 190
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
+ V+ L +A DLG +AV E G+G + + FPV ++ I+++ +
Sbjct: 24 KKAVIETLRSELEGQADPDLGIIIAVLDAEIEGDGILLSEDPNIYFPVKYTLISYEPMQL 83
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM-PDYRYVQAENPVFLSEKNPKIEKDVVV 145
EV G V G+F+ GP++ M D Y+Q E IE +V
Sbjct: 84 EVSKGIVRDARDFGLFVSLGPIDGFVHRSQIMDEDIEYIQERRGFKGKETGRLIEAGDIV 143
Query: 146 RV 147
V
Sbjct: 144 NV 145
>gi|385805487|ref|YP_005841885.1| DNA-directed RNA polymerase subunit E' [Fervidicoccus fontis
Kam940]
gi|383795350|gb|AFH42433.1| DNA-directed RNA polymerase subunit E' [Fervidicoccus fontis
Kam940]
Length = 158
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G++ G V S I+ K EV++G V V +G+F++ GP++ +
Sbjct: 40 GKIVHGDGASYHNVEASIISMKPLMHEVVEGFVTDVKDYGLFIRIGPIDGFVHKSQISDE 99
Query: 121 Y-RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
Y Y + L N IE+ +VR +I + ++E + +++ +LG
Sbjct: 100 YVEYDSSREAFILKNSNRIIERGDIVRARIIALSFSTEKKEIRVQLTMRQPYLG 153
>gi|353240426|emb|CCA72296.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Piriformospora indica DSM 11827]
Length = 227
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
++ R L+ + +D+G ++V L GEG+VR G + + V F F+ F EV
Sbjct: 25 VIARELNKKYANRILQDIGLVISVFDLTKCGEGKVRYGDGCLWYKVEFRLAVFRPFISEV 84
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
L G V + G+ + + +++ S++P
Sbjct: 85 LIGKVKSQDEDGIRVTLTFFDEVHIDKSQLP 115
>gi|393236166|gb|EJD43716.1| hypothetical protein AURDEDRAFT_145291 [Auricularia delicata
TFB-10046 SS5]
Length = 223
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 7 LPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVREN 66
LP +PAE +++ L +A R D+G + V L + GEG+VR
Sbjct: 14 LPATFSIPAE----------QALKFELNKKYANR-VLHDVGLCVCVFDLIHAGEGKVRYG 62
Query: 67 TGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQA 126
G + V F + F+ F+ EVL TV + G+ L +++++ +P Y A
Sbjct: 63 DGCLWHKVTFRLVVFRPFKSEVLLATVQSSSEDGIRLSVEFFDDMFIPLEYLP---YPSA 119
Query: 127 ENP 129
+P
Sbjct: 120 FDP 122
>gi|365984895|ref|XP_003669280.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
gi|343768048|emb|CCD24037.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K +G + V + + EG+++ G V+F G+ FK F GE
Sbjct: 24 SCITHELNNKYANKIVPHIGLCITVYDILEVDEGQLKPGDGASYISVIFRGLIFKPFVGE 83
Query: 88 VLDGTVHKVLKHGVFLK-CGPVENIYLTCSKMPDYRYVQAENPVFL 132
++ G + K G+ + G E+I++ + + Y E+ ++
Sbjct: 84 IITGWISKCTAEGIKVSLLGMFEDIFIPKKMLFEGCYYSPEDSAWV 129
>gi|402467510|gb|EJW02798.1| hypothetical protein EDEG_00255 [Edhazardia aedis USNM 41457]
Length = 157
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 72/135 (53%), Gaps = 15/135 (11%)
Query: 42 ATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGV 101
+++ G + V + I G++ TG V+F V + + K + E++D + V GV
Sbjct: 38 CSQENGLIIMVLDILTIDGGKI-STTGHVVFKVNYKALLLKPIKSEIIDAPIVDVNAMGV 96
Query: 102 FLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161
F + GP+ I+++ + + + KN +++K+ +R+ +IGTK ++++R +
Sbjct: 97 FCEAGPL-TIFVSSFHIKEKIW-----------KNNELKKNDKLRIKIIGTK-IDSKRPY 143
Query: 162 QALVSLEGDFLGPVS 176
A+ +++ + LG ++
Sbjct: 144 -AIGTIQEEHLGKIA 157
>gi|308162256|gb|EFO64663.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia P15]
Length = 215
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ +++ V VP ++ L+ ++ L F R T + G L + + N+ E
Sbjct: 1 MFVSLQIIDTVRVPP---SSQTRYLESKLLEILTASFCGRVLT-NCGICLLIERITNLSE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDG-TVHKVLKHGVFLKCGPVENIYLTCSKMP 119
R+ N V FS I F+ + GE+ V + HG+ L G + I + S +P
Sbjct: 57 QRIIHNDCNTYVTVCFSIIAFRPYIGEIFTTFLVSQHPMHGLALSTGFCDTIIVPPSNLP 116
Query: 120 DYRYVQAEN------PVFLSEKNPKIEKDVVVRVI 148
+Y E P F SE + ++ ++ ++V+
Sbjct: 117 EYLMWNTERQGFTNLPDFESELDFELGGEIKIKVM 151
>gi|213406069|ref|XP_002173806.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
gi|212001853|gb|EEB07513.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
Length = 205
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 33 LLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVL 89
L D+ ++ A K +G +A+ IGEG ++ G V F + F+ FRGEV+
Sbjct: 26 LSDEINKKYANKVIQQVGLAIAIFDFLTIGEGIIKFGDGCSYMNVKFRLLVFRPFRGEVM 85
Query: 90 DGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAE 127
G + + G+ + G ++I++ +PD A+
Sbjct: 86 LGRIKSCTELGIRVTLGFFDDIFVPKEMLPDPSVYNAQ 123
>gi|154343111|ref|XP_001567501.1| putative RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064833|emb|CAM42939.1| putative RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 199
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 42 ATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
A+K +AV + N +G+V ++ G V F + + + K+ RGEVLD V V +
Sbjct: 55 ASKSSAVVIAVLDILNAETLQGKVLDD-GSVTFRLTYEALVLKLHRGEVLDLLVSDVDET 113
Query: 100 GVFLKCGPVENIYLTCSKM-PDYR------YVQAENPVFLSEKN-PKIEKDVVVRVIVIG 151
G + V +++ ++M D + +AE ++S + I+KD +VRV VI
Sbjct: 114 GFWASVYGVNKLFVNRNQMGEDVKTGALEWSFEAETAAWVSNDDRHSIKKDTMVRVRVIA 173
Query: 152 TKWLEAEREFQALVSLEGDFLGP 174
++ER A+ ++ FLGP
Sbjct: 174 ET-PQSERGM-AVGTIGAPFLGP 194
>gi|326472096|gb|EGD96105.1| RNA polymerase II subunit 7 [Trichophyton tonsurans CBS 112818]
gi|326477039|gb|EGE01049.1| RNA polymerase II subunit 7 [Trichophyton equinum CBS 127.97]
Length = 160
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V + +I EG++ +G + +V+ I +
Sbjct: 19 GSHVKEYLSQKLLDD-VEGICTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE G+F + GP+ P+ ++ + P + + IE
Sbjct: 77 KPFKGET---------NQGIFAEVGPLTVFVSKHLIPPEIKWDPDSTPPQYTDNADQVIE 127
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+R+ +IG + R A+ S+ D+LG
Sbjct: 128 TGTNLRIKLIGLR--NDVRNMFAIGSIREDYLG 158
>gi|448577214|ref|ZP_21642844.1| DNA-directed RNA polymerase subunit E' [Haloferax larsenii JCM
13917]
gi|445727859|gb|ELZ79468.1| DNA-directed RNA polymerase subunit E' [Haloferax larsenii JCM
13917]
Length = 190
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTP----ERVKRLLQDKLEGRMDEDVGSVVSVVNVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F IT+ EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEAEFDAITYDPDMQEVVDGIVVEVVEFGAFIGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTK------------------------WL 155
Y EN S E N + D VR ++ WL
Sbjct: 117 YLAYDGENQQLASTESNQTLAVDDEVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
EA+R+ Q+ S EG+
Sbjct: 177 EAKRQ-QSEASAEGN 190
>gi|356572779|ref|XP_003554543.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like
[Glycine max]
Length = 212
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +LG ++V + +I G + G + VVF+ I F+ F E++ + G
Sbjct: 37 KVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENP 129
+ L G ++IY+ S++PD + P
Sbjct: 97 LRLTIGFYDDIYIPASRLPDPNHFVETEP 125
>gi|302506941|ref|XP_003015427.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
gi|291178999|gb|EFE34787.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
Length = 297
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G ++ + +LLDD T D Y + V + +I EG++ +G + +V+ I +
Sbjct: 19 GSHVKEYLSQKLLDD-VEGICTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVW 76
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRY-VQAENPVFLSEKNPKIE 140
K F+GE G+F + GP+ P+ ++ + P + + IE
Sbjct: 77 KPFKGET---------NQGIFAEVGPLTVFVSKHLIPPEIKWDPDSTPPQYTDNADQVIE 127
Query: 141 KDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+R+ +IG + R A+ S+ D+LG
Sbjct: 128 TGTNLRIKLIGLR--NDVRNMFAIGSIREDYLG 158
>gi|146096465|ref|XP_001467814.1| putative RNA polymerase-like protein [Leishmania infantum JPCM5]
gi|398020774|ref|XP_003863550.1| RNA polymerase-like protein, putative [Leishmania donovani]
gi|134072180|emb|CAM70881.1| putative RNA polymerase-like protein [Leishmania infantum JPCM5]
gi|322501783|emb|CBZ36865.1| RNA polymerase-like protein, putative [Leishmania donovani]
Length = 199
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 42 ATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
A+K +AV + N +G+V ++ G V F + + + K+ RGEVLD V V +
Sbjct: 55 ASKSSAVVIAVLDILNAETLQGKVLDD-GSVSFRLTYEAMVLKLHRGEVLDLLVSDVDET 113
Query: 100 GVFLKCGPVENIYLTCSKM--------PDYRYVQAENPVFLSEKNPK-IEKDVVVRVIVI 150
G + V +++ ++M ++ + +AE ++S + + I+KD +VR+ VI
Sbjct: 114 GFWASVYGVNKLFVNRNQMGEDLKTGRSEWSF-EAETAAWVSNDDRRSIKKDTMVRLRVI 172
Query: 151 GTKWLEAEREFQALVSLEGDFLGP 174
++ER A+ ++ FLGP
Sbjct: 173 AET-PQSERGM-AVGTIGAPFLGP 194
>gi|19112860|ref|NP_596068.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe 972h-]
gi|74582844|sp|O94285.1|RPC8_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName: Full=RNA
polymerase III subunit C25
gi|339961228|pdb|3AYH|B Chain B, Crystal Structure Of The C1725 SUBCOMPLEX FROM S. POMBE
RNA Polymerase Iii
gi|3850072|emb|CAA21883.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe]
gi|76782157|gb|ABA54849.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces pombe]
Length = 203
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +++G + V IGEG ++ G VVF I F+ FRGEV+ G + + G
Sbjct: 37 KVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEG 96
Query: 101 VFLKCGPVENIYL-------TCSKMPDYR 122
+ + ++I++ C PD R
Sbjct: 97 IRVTISFFDDIFIPKDMLFDPCVFRPDER 125
>gi|50550449|ref|XP_502697.1| YALI0D11396p [Yarrowia lipolytica]
gi|49648565|emb|CAG80885.1| YALI0D11396p [Yarrowia lipolytica CLIB122]
Length = 202
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 30 VVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVL 89
+V +++ K +G + V L +GEG+V G + F + F+ F GEVL
Sbjct: 26 IVDEINNCYANKIIDGVGLCICVYDLITVGEGQVMSGDGAAFVKITFRMVVFRPFVGEVL 85
Query: 90 DGTVHKVLKHGVFLKCGPVENIYL 113
+G + G+ +K ++I++
Sbjct: 86 EGWISSCTAEGIKVKMEFFDDIFI 109
>gi|157873888|ref|XP_001685444.1| putative RNA polymerase-like protein [Leishmania major strain
Friedlin]
gi|68128516|emb|CAJ08648.1| putative RNA polymerase-like protein [Leishmania major strain
Friedlin]
Length = 199
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 42 ATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
A+K +AV + N +G+V ++ G V F + + + K+ RGEVLD V V +
Sbjct: 55 ASKSSAVVIAVLDILNAETLQGKVLDD-GSVSFRLTYEAMVLKLHRGEVLDLLVSDVDET 113
Query: 100 GVFLKCGPVENIYLTCSKM--------PDYRYVQAENPVFLSEKNPK-IEKDVVVRVIVI 150
G + V +++ ++M ++ + +AE ++S + + I+KD +VR+ VI
Sbjct: 114 GFWASVYGVNKLFVNRNQMGEDMKTGKSEWSF-EAETAAWVSNDDRRSIKKDTMVRLRVI 172
Query: 151 GTKWLEAEREFQALVSLEGDFLGP 174
++ER A+ ++ FLGP
Sbjct: 173 AET-PQSERGM-AVGTIGAPFLGP 194
>gi|363807592|ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycine max]
gi|255644932|gb|ACU22966.1| unknown [Glycine max]
Length = 214
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +LG ++V + +I G + G + VVF+ I F+ F E++ + G
Sbjct: 37 KVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADG 96
Query: 101 VFLKCGPVENIYLTCSKMPD-YRYVQAEN 128
+ L G ++IY+ S++PD +V+ E
Sbjct: 97 LRLTIGFFDDIYIPASRLPDPNHFVETEQ 125
>gi|164656000|ref|XP_001729128.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
gi|159103018|gb|EDP41914.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
Length = 232
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +D+G + V + EGRVR G + + VVF + F+ F EVL G +
Sbjct: 37 KVLQDIGLCICVHDILRSSEGRVRWGDGCLYYTVVFRLVVFRPFTNEVLVGRISSSTSES 96
Query: 101 VFLKCGPVENIYLTCSKMP 119
+ + G ++I++ +P
Sbjct: 97 IRISVGFFDDIFIPPHFLP 115
>gi|359415612|ref|ZP_09208044.1| DNA-directed RNA polymerase subunit E' [Candidatus Haloredivivus
sp. G17]
gi|358034031|gb|EHK02504.1| DNA-directed RNA polymerase subunit E' [Candidatus Haloredivivus
sp. G17]
Length = 189
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ ++ + +V VP E+L G ++ S++ L + + D+G + + ++ I
Sbjct: 1 MYKRLTIEDSVRVPPEHL---GGDVEESVLNGLKE--KEGEIHSDIGVIIGIEEVKEIEG 55
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + V + V+ + F+ EV+ G V + + G F++ GP + + D
Sbjct: 56 GDIEPEDAGVHYNAVYKALVFEPELHEVVTGEVVDLTEFGAFVRIGPFDGLCHISQVTDD 115
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIVIGTKWLEAER 159
Y + E + +S++ K + V R+I + E+ +
Sbjct: 116 YMNLDEEAQMLVSDEQDKSLGVNDLVTTRIIAVSLGNQESNK 157
>gi|315231773|ref|YP_004072209.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus MP]
gi|315184801|gb|ADT84986.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus MP]
Length = 186
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
KD G LAV + + EG + G VVF + +K EV++G V V +G F+
Sbjct: 40 KDEGVILAVLDVHEVSEGVIVPGDGATYHEVVFDVLVWKPEMHEVVEGEVVDVAPYGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP---KIEKDVVVRVIVIGTK 153
+ GP++ + M DY +N FL ++ K+ +V R+I I K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNKQFLGKEKKYLLKLGDEVRARIIAISVK 152
>gi|253743778|gb|EET00085.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia intestinalis ATCC 50581]
Length = 214
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ +++ V VP ++ L+ ++ L F R + G L + + N+ E
Sbjct: 1 MFISLQIVDTVRVPPS---SQTRYLESKLLEILTASFCGR-VLANCGICLLIEKITNLSE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDG-TVHKVLKHGVFLKCGPVENIYLTCSKMP 119
R+ +N V FS I F+ + GE+ V + HG+ L G + I + S +P
Sbjct: 57 QRIVQNDCNTYVTVHFSVIAFRPYIGEIFTTFLVSQHPMHGLALSTGFCDTILVPPSNLP 116
Query: 120 DYRYVQAE------NPVFLSEKNPKIEKDVVVRVI 148
+Y E P F +E + ++ ++ +RV+
Sbjct: 117 EYLIWDNECQGFINTPDFDTELDFELGGEIKIRVV 151
>gi|159117083|ref|XP_001708762.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia ATCC 50803]
gi|157436875|gb|EDO81088.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia ATCC 50803]
Length = 215
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ +++ V VP ++ L+ ++ L F R + G L + + N+ E
Sbjct: 1 MFISLQVIDTVRVPPS---SQTRYLESKLLEILTASFCGR-VLANCGICLLIERITNLSE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDG-TVHKVLKHGVFLKCGPVENIYLTCSKMP 119
R+ N V FS I F+ + GE+ V + HG+ L G + I + S +P
Sbjct: 57 QRIVHNDCNTYVTVCFSIIAFRPYIGEIFTAFLVSQHPMHGLALSTGFCDTIIVPPSNLP 116
Query: 120 DYRYVQAEN------PVFLSEKNPKIEKDVVVRVI 148
+Y E P F SE + ++ ++ ++V+
Sbjct: 117 EYLMWNNERQGFTNLPDFESELDFELGGEIKIKVV 151
>gi|451992730|gb|EMD85209.1| hypothetical protein COCHEDRAFT_1229156 [Cochliobolus
heterostrophus C5]
Length = 213
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 33 LLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGT 92
+++D + ++G L + L + EG + TG V V F F+ FRGE++ G
Sbjct: 29 VINDKYSNRIIPNIGLCLCMWDLLSASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGR 88
Query: 93 VHKVLKHGVFLKCGPVENIYLTCSKMPD-YRYVQAEN 128
+ + G+ + I++ +P+ + QAEN
Sbjct: 89 IKSSNQEGIIIDLEFTSEIFIPYQNLPENSSFSQAEN 125
>gi|367014661|ref|XP_003681830.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
gi|359749491|emb|CCE92619.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
Length = 210
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S V L++ K +G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAVTHQLNNKFANKVIPHVGLCITIYDLLEVDEGQLKPGDGASYIYVTFRALVFKPFAGE 83
Query: 88 VLDGTVHKVLKHGVFLK-CGPVENIYL 113
VL G + K G+ + G E+I+L
Sbjct: 84 VLTGWISKCTAEGIKVSLMGVFEDIFL 110
>gi|408404449|ref|YP_006862432.1| DNA-directed RNA polymerase, subunit E` [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365045|gb|AFU58775.1| DNA-directed RNA polymerase, subunit E` [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 196
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 27 RSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
+ +++L + + D+GY + +T + G++ G V F +TF
Sbjct: 23 KDAAIQILKEKYESMISPDVGYVIMITDADTSSVGKLVAGDGATYHKVTFKALTFYPKLQ 82
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVR 146
E+++G V ++ G F++ GP + + DY + V ++ + R
Sbjct: 83 EIVEGEVVEITDFGAFVRIGPTDALLHLSQITDDYLKSDVKQGVIVANQT--------AR 134
Query: 147 VIVIGTKWLEAEREFQALVSL-EGDFLGP--VSCENPL 181
+ IG+K R VSL +G +G ++C P
Sbjct: 135 SLKIGSKL----RARITAVSLGKGAGMGKIGITCRQPF 168
>gi|367042650|ref|XP_003651705.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
gi|346998967|gb|AEO65369.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
Length = 199
Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K + +G + + + EG + + G V V F + F+ F+GEV+ +
Sbjct: 36 NKVVQKIGLCICLWDILWTSEGLIGQGDGMVNVNVEFRMVVFRPFKGEVIVARITDQSSE 95
Query: 100 GVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI---EKDVVVRVIVIGTKW 154
G++L +NI++ +++P+ + +++ ++ ++ + + +VRV VI +W
Sbjct: 96 GIYLATDFFDNIFVPWTELPEGSEFEPNENLWVWKEEDQVMYFDNNEMVRVKVISEEW 153
>gi|389847431|ref|YP_006349670.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
gi|448617209|ref|ZP_21665864.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
gi|388244737|gb|AFK19683.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
gi|445748558|gb|EMA00005.1| DNA-directed RNA polymerase subunit E' [Haloferax mediterranei ATCC
33500]
Length = 190
Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTP----ERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F IT+ EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTK------------------------WL 155
Y EN S E N + D VR ++ WL
Sbjct: 117 YLAYDGENQQLASTESNQTLAVDDEVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
EA+R+ Q+ S EG+
Sbjct: 177 EAKRQ-QSEASAEGN 190
>gi|333987965|ref|YP_004520572.1| DNA-directed RNA polymerase [Methanobacterium sp. SWAN-1]
gi|333826109|gb|AEG18771.1| DNA-directed RNA polymerase [Methanobacterium sp. SWAN-1]
Length = 197
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+L K+ V +P + P+ + V LL++ K LG + V +E+IG
Sbjct: 1 MYLISKIEDTVRIPPSRFEE--PL--NDVAVELLNESYVGTVDKKLGLMVTVKEIEDIGV 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V G VVF+ ++FK E+++G V ++ + G F++ GP++ + D
Sbjct: 57 GNVIMGDGAAYHDVVFTALSFKPELHEIIEGEVIEITEFGAFVRMGPMDGLVHVSQVTDD 116
Query: 121 YRYVQAENPVFLSEKNPK 138
Y + L +++ K
Sbjct: 117 YINYDGKRGALLGKESKK 134
>gi|66362138|ref|XP_628033.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
gi|46227635|gb|EAK88570.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
Length = 209
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 47/98 (47%)
Query: 34 LDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTV 93
++D K K+ G + +++ + + G +LF V F I+F+ + GEV++G V
Sbjct: 56 INDKYLNKVVKNAGLMIYFVGFDDVDHADIDNDEGGLLFCVTFKMISFRPYVGEVIEGVV 115
Query: 94 HKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVF 131
G+ + G +I + C+ + + + + + ++
Sbjct: 116 IDSDSTGLTVSLGFFSDIKIPCNDLREPKSIDSNTKIW 153
>gi|90018178|gb|ABD83902.1| DNA directed RNA polymerase II polypeptide G [Ictalurus punctatus]
Length = 86
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 71 LFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPV 108
L+PV + I F+ F+GEV+D V +V K G+F + GP+
Sbjct: 4 LYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM 41
>gi|126465733|ref|YP_001040842.1| DNA-directed RNA polymerase subunit E' [Staphylothermus marinus F1]
gi|126014556|gb|ABN69934.1| DNA-directed RNA polymerase, subunit E' [Staphylothermus marinus
F1]
Length = 185
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 43 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVF 102
TK+LG + V ++ +G+V G F+ + F F EV++G ++ VL HG F
Sbjct: 40 TKNLGIIVTVLDVKVDPQGKVIPGDGATYHKAEFTVLAFYPFIKEVVEGRINTVLAHGAF 99
Query: 103 LKCGPVEN-IYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161
+ G + IY+ Y + L E +E+ VR V L +
Sbjct: 100 VDLGASDGFIYINQISDEKIDYDPTRPALILRESRRMLERGDAVRARVYNVAPLPG-KGL 158
Query: 162 QALVSLEGDFLGPVS 176
+ +++ FLG +
Sbjct: 159 RVQLTMRQPFLGKIE 173
>gi|352681821|ref|YP_004892345.1| DNA-directed RNA polymerase subunit E' [Thermoproteus tenax Kra 1]
gi|350274620|emb|CCC81265.1| DNA-directed RNA polymerase, subunit E' [Thermoproteus tenax Kra 1]
Length = 189
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K+ +DLGY +AV + EG + G +F +TF GEV+ G V + G
Sbjct: 38 KSFRDLGYVVAVLDAKVNREGVIIFGDGATYHKAIFHILTFMPLDGEVVHGIVESAREVG 97
Query: 101 VFLKCGPVENIYLTCSKMPDYRYV-QAENPVFLSEKN-PKIEKDVVVRVIVIGTKWLEAE 158
V ++ GPV M + + A F+ E+ K+ VVR + G ++ A+
Sbjct: 98 VMVRIGPVLGFINKIHLMDEPNVLFDASTKSFIGERTKKKLSIGDVVRARITGISYV-AQ 156
Query: 159 RE 160
+E
Sbjct: 157 KE 158
>gi|119872434|ref|YP_930441.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum islandicum DSM
4184]
gi|119673842|gb|ABL88098.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum islandicum DSM
4184]
Length = 195
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ +++GY +AV T + EGR+ G VF+ + + GE+++G V V + G
Sbjct: 42 RVLREVGYVVAVLTAKVGREGRIVFGDGGTYHRAVFTMLAYMPLDGEIIEGVVENVREMG 101
Query: 101 VFLKCGPV 108
+ ++ GP+
Sbjct: 102 MLVRIGPI 109
>gi|440632844|gb|ELR02763.1| hypothetical protein GMDG_05707 [Geomyces destructans 20631-21]
Length = 207
Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K + +G + + L + EG + TG V V F + F+ FR EVL G + G
Sbjct: 37 KVIQKIGLCICLYDLLSSSEGLIGHGTGLVNVNVEFRLVVFRPFRHEVLHGRITSASPEG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKI 139
+ L+ +I++ + +P + VF+ ++P I
Sbjct: 97 IHLRTTFFSDIFVPATSLPAGTFFDHSQGVFIY-RHPHI 134
>gi|159041701|ref|YP_001540953.1| DNA-directed RNA polymerase subunit E' [Caldivirga maquilingensis
IC-167]
gi|157920536|gb|ABW01963.1| DNA-directed RNA polymerase [Caldivirga maquilingensis IC-167]
Length = 211
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K ++LG F+AV ++ G + G V F + F E+++G V V ++G
Sbjct: 53 KVDRELGVFIAVFDVKVDKRGVIVYGDGATYHKVSFKALVFVPLINEIVEGDVVDVKEYG 112
Query: 101 VFLKCGPVENIYLTCSKMPDYRYV--QAENPVFLSEKN--PKIEKDVVVRVIVIGTKWLE 156
++ G + ++ S++ D V ++ VF+ EKN K+ + VVR ++G ++
Sbjct: 113 AHVRIGAL-TAFIHRSQVMDENVVLFDRQSGVFMGEKNRQKKVGRGDVVRARIVGVSYVS 171
Query: 157 AEREFQALVS--LEGDFLGPV 175
+ VS + FLG +
Sbjct: 172 TANGIRLNVSMTMRQPFLGKI 192
>gi|401426977|ref|XP_003877972.1| putative RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494219|emb|CBZ29516.1| putative RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 199
Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 42 ATKDLGYFLAVTTLENIG--EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
A+K +AV + N +G+V ++ G V F + + + K+ RGEVLD V V +
Sbjct: 55 ASKSSAVVIAVLDILNAETLQGKVLDD-GSVSFRLTYEAMVLKLHRGEVLDLLVSDVDET 113
Query: 100 GVFLKCGPVENIYLTCSKM--------PDYRYVQAENPVFLSEKNPK-IEKDVVVRVIVI 150
G + V +++ ++M ++ + +AE ++S + + I+KD +VR+ V+
Sbjct: 114 GFWASVYGVNKLFVNRNQMGEDMKTGRSEWSF-EAETAAWVSNDDRRSIKKDTMVRLRVL 172
Query: 151 GTKWLEAEREFQALVSLEGDFLGP 174
++ER A+ ++ FLGP
Sbjct: 173 AET-PQSERGM-AVGTIGAPFLGP 194
>gi|399577887|ref|ZP_10771639.1| DNA-directed RNA polymerase, subunit e' [Halogranum salarium B-1]
gi|399237329|gb|EJN58261.1| DNA-directed RNA polymerase, subunit e' [Halogranum salarium B-1]
Length = 189
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ KV+L V VP ++L P QR V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKKVRLKDTVEVPPKHLADVTP--QR--VKRLLQDKLEGRMDEDVGSVVSVVNVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F IT+ EV+DGTV +V++ G F+ GPV+ + +
Sbjct: 57 GSVLPNRPGVYYQAEFDAITYDPQMQEVVDGTVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-----------------------EKNPKIEK-DVVVRVIVIGTK-WL 155
Y EN S E+NP+ K + + +G WL
Sbjct: 117 YLAYDGENQQLASTDSNDTLGVDDAVRVRVVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEG 169
E +RE + S EG
Sbjct: 177 EQKRE-ERQASTEG 189
>gi|67607603|ref|XP_666822.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657887|gb|EAL36594.1| hypothetical protein Chro.10225 [Cryptosporidium hominis]
Length = 200
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%)
Query: 34 LDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTV 93
++D K K+ G + + + + + G +LF V F I+F+ + GEV++G V
Sbjct: 47 INDKYLNKVVKNAGLMIYFVGFDGVDHADIDNDEGGLLFCVTFKMISFRPYVGEVIEGVV 106
Query: 94 HKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVF 131
G+ + G +I + C+ + + + + + ++
Sbjct: 107 IDSDSTGLTVSLGFFSDIKIPCNDLREPKSIDSNTKIW 144
>gi|402311535|ref|ZP_10830476.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium ICM7]
gi|400371707|gb|EJP24657.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
bacterium ICM7]
Length = 700
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ GIT +I G V+ GTV ++L+ G F++ P ++ + SK+ D R + E+ V
Sbjct: 615 IIRGITIEIETGMVMRGTVVRMLEFGAFVELAPGKDGMVHISKLSDKRVEKVEDVV---- 670
Query: 135 KNPKIEKDVVVRVIVI 150
KI +V V+V+ +
Sbjct: 671 ---KIGDEVTVKVVKV 683
>gi|145592427|ref|YP_001154429.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum arsenaticum DSM
13514]
gi|379005594|ref|YP_005261266.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
gi|145284195|gb|ABP51777.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum arsenaticum
DSM 13514]
gi|375161047|gb|AFA40659.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
Length = 191
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ + +++L + + R +++GY +AV + EG++ G VF+ + F
Sbjct: 20 GKPLEETALLQLKNRYEGR-VLREVGYVVAVLNTKVSREGKIVFGDGGTYHKAVFTMLAF 78
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPV 108
GE+++G V V + G+ ++ GPV
Sbjct: 79 MPLDGEIVEGVVENVREMGMLVRIGPV 105
>gi|403217141|emb|CCK71636.1| hypothetical protein KNAG_0H02220 [Kazachstania naganishii CBS
8797]
Length = 206
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ K+ V VP + K V L+ K +LG ++V L + E
Sbjct: 1 MFILSKIKELVRVPPDQFQRKTAF----AVTHQLNTKYANKVIPNLGLCISVYDLLEVDE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG--VFLKCGPVENIYLTCSKM 118
G+++ G V F + FK F GE+L G + +G V LK ++I++ + +
Sbjct: 57 GQLKPGDGATYTNVTFRALIFKPFVGEILTGWITNCNANGMQVTLKGQMFQDIFIPANML 116
Query: 119 PDYRY 123
D Y
Sbjct: 117 FDNCY 121
>gi|297527594|ref|YP_003669618.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM 12710]
gi|297256510|gb|ADI32719.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM 12710]
Length = 185
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Query: 43 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVF 102
TK+LG + V + +G++ G F+ + F F EV++G ++ VL HG F
Sbjct: 40 TKNLGIIVTVLDVNVDPQGKIIPGDGATYHKAEFTVLAFYPFIKEVVEGRINTVLAHGAF 99
Query: 103 LKCGPVEN-IYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161
+ G + IY+ Y + L E +E+ VR V L +
Sbjct: 100 VDLGASDGFIYINQISDEKIDYDPTRPALILRESRRMLERGDAVRARVYNVAPLPG-KGL 158
Query: 162 QALVSLEGDFLGPV 175
+ +++ FLG +
Sbjct: 159 RVQLTMRQPFLGKI 172
>gi|254577683|ref|XP_002494828.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
gi|238937717|emb|CAR25895.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
Length = 209
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K +G + V + + EG++R G V F + FK F GE
Sbjct: 24 SSITHELNNAYANKVIPHIGLCITVYDILEVDEGQLRPGDGASYINVTFRALVFKPFVGE 83
Query: 88 VLDGTVHKVLKHGVFLK-CGPVENIYLT-------CSKMPD 120
V+ G + K G+ + G +I++ CS PD
Sbjct: 84 VITGWISKCTAEGIKVSLLGLFNDIFIPQNMLFEGCSYSPD 124
>gi|14591652|ref|NP_143736.1| DNA-directed RNA polymerase subunit E' [Pyrococcus horikoshii OT3]
gi|3258350|dbj|BAA31033.1| 188aa long hypothetical DNA-directed RNA polymerase subunit E
[Pyrococcus horikoshii OT3]
Length = 188
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G L++ ++ +G+G + G VVF + ++ R EV++GTV V+ G F+
Sbjct: 40 RDEGVILSIVEVKEVGDGIIVPGDGATYHEVVFDVLVWEPKRDEVVEGTVVDVVPFGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP---KIEKDVVVRVIVIGTK 153
+ GP++ + M DY N F+ ++ KI V R+I + K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDAVRARIITVSPK 152
>gi|448593403|ref|ZP_21652401.1| DNA-directed RNA polymerase subunit E' [Haloferax elongans ATCC
BAA-1513]
gi|445730311|gb|ELZ81901.1| DNA-directed RNA polymerase subunit E' [Haloferax elongans ATCC
BAA-1513]
Length = 190
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTP----ERVKRLLQDKLEGRMDEDVGSVVSVVNVHDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V + V + F IT+ EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPSRPGVYYEAEFDAITYDPDMQEVVDGIVVEVVEFGAFIGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVIGTK------------------------WL 155
Y EN S E N + D VR ++ WL
Sbjct: 117 YLAYDGENQQLASTESNQTLAVDDEVRARIVTKSIDERNPRDSKIGLTAKQPGLGKHGWL 176
Query: 156 EAEREFQALVSLEGD 170
EA+R+ Q+ S EG+
Sbjct: 177 EAKRQ-QSEASAEGN 190
>gi|404482412|ref|ZP_11017639.1| polyribonucleotide nucleotidyltransferase [Clostridiales bacterium
OBRC5-5]
gi|404344573|gb|EJZ70930.1| polyribonucleotide nucleotidyltransferase [Clostridiales bacterium
OBRC5-5]
Length = 700
Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ GIT +I G ++ GTV ++L+ G F++ P ++ + SK+ D R + E+ V
Sbjct: 615 IIRGITIEIETGMIMRGTVVRMLEFGAFVELAPGKDGMVHISKLSDKRVEKVEDVV---- 670
Query: 135 KNPKIEKDVVVRVIVI 150
KI +V V+V+ +
Sbjct: 671 ---KIGDEVTVKVVKV 683
>gi|292656032|ref|YP_003535929.1| DNA-directed RNA polymerase subunit E [Haloferax volcanii DS2]
gi|433418787|ref|ZP_20405085.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. BAB2207]
gi|448290021|ref|ZP_21481177.1| DNA-directed RNA polymerase subunit E' [Haloferax volcanii DS2]
gi|448544947|ref|ZP_21625760.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-646]
gi|448547324|ref|ZP_21626802.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-645]
gi|448556202|ref|ZP_21631927.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-644]
gi|448570176|ref|ZP_21639170.1| DNA-directed RNA polymerase subunit E' [Haloferax lucentense DSM
14919]
gi|448584804|ref|ZP_21647547.1| DNA-directed RNA polymerase subunit E' [Haloferax gibbonsii ATCC
33959]
gi|448599417|ref|ZP_21655321.1| DNA-directed RNA polymerase subunit E' [Haloferax alexandrinus JCM
10717]
gi|448607770|ref|ZP_21659723.1| DNA-directed RNA polymerase subunit E' [Haloferax sulfurifontis
ATCC BAA-897]
gi|448620323|ref|ZP_21667671.1| DNA-directed RNA polymerase subunit E' [Haloferax denitrificans
ATCC 35960]
gi|291370707|gb|ADE02934.1| DNA-directed RNA polymerase subunit E [Haloferax volcanii DS2]
gi|432199629|gb|ELK55786.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. BAB2207]
gi|445580413|gb|ELY34792.1| DNA-directed RNA polymerase subunit E' [Haloferax volcanii DS2]
gi|445704725|gb|ELZ56634.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-646]
gi|445716335|gb|ELZ68079.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-645]
gi|445716954|gb|ELZ68683.1| DNA-directed RNA polymerase subunit E' [Haloferax sp. ATCC BAA-644]
gi|445723477|gb|ELZ75119.1| DNA-directed RNA polymerase subunit E' [Haloferax lucentense DSM
14919]
gi|445727658|gb|ELZ79268.1| DNA-directed RNA polymerase subunit E' [Haloferax gibbonsii ATCC
33959]
gi|445736878|gb|ELZ88418.1| DNA-directed RNA polymerase subunit E' [Haloferax alexandrinus JCM
10717]
gi|445737707|gb|ELZ89239.1| DNA-directed RNA polymerase subunit E' [Haloferax sulfurifontis
ATCC BAA-897]
gi|445757111|gb|EMA08467.1| DNA-directed RNA polymerase subunit E' [Haloferax denitrificans
ATCC 35960]
Length = 190
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTP----ERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F IT+ EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAYDGENQQLASTESNQTLAVDDEVRARIV 147
>gi|396472452|ref|XP_003839119.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
gi|312215688|emb|CBX95640.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
Length = 1244
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NIGEGRVRENTGEVLFPVVFSGI 79
GP++++ I LL +++ G + V L+ I +G+V +G + V + I
Sbjct: 19 GPLIRQHIHRELL----QKEEGSSTGKYAIVCILDAFEISDGKVMPGSGSAEYVVHYKAI 74
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRY-VQAENPVFLSEKNP 137
++ ++GEV+DG V VL+ G F+ CG ++ +++ +P + ++ A P + +
Sbjct: 75 VWRPYKGEVVDGVVVSVLRTGFFVDCGSLQ-VFVGRHMIPSEVKFDANATPPQWTDDGEQ 133
Query: 138 KIEKDVVVRVIVIGTK 153
IEK +R+ + G +
Sbjct: 134 VIEKGTNIRIKIKGLR 149
>gi|255730589|ref|XP_002550219.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132176|gb|EER31734.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 197
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 29 IVVRLLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
I V L D+ ++ + K +LG ++V L +I +G ++ G V F + +K FR
Sbjct: 22 IRVSLSDELHKKYSNKIIANLGLAISVWDLLDIKDGLLKPGDGGSYVEVKFRALVWKPFR 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYL 113
GE+L G V + G+ ++ + I++
Sbjct: 82 GEILTGWVTECTAKGIKVRLEFFDEIWI 109
>gi|156846922|ref|XP_001646347.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
gi|156117022|gb|EDO18489.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
Length = 222
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ K+ V +P + SI +L + FA K +G + V L + E
Sbjct: 1 MFMLTKIKDLVRIPPDQFHRDSA---SSITHQLNNKFAN-KVIPHVGLCITVYDLLEVDE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLK-CGPVENIYL 113
G+++ G V F + FK F GE++ G + K G+ + G +++I++
Sbjct: 57 GQLKPGDGSSYIYVTFRAVVFKPFVGEIVTGWITKCTAEGIKVSLSGMMDDIFI 110
>gi|448612515|ref|ZP_21662537.1| DNA-directed RNA polymerase subunit E' [Haloferax mucosum ATCC
BAA-1512]
gi|445741363|gb|ELZ92865.1| DNA-directed RNA polymerase subunit E' [Haloferax mucosum ATCC
BAA-1512]
Length = 190
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTP----ERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V N V + F IT+ EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPNRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAYDGENQQLASTESNQTLAVDDEVRARIV 147
>gi|259147697|emb|CAY80947.1| Rpc25p [Saccharomyces cerevisiae EC1118]
Length = 212
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGVFLK-CGPVENIYLTCSKMPDYRYVQAENPVFLSEKNP--------- 137
++ G + K G+ + G ++I++ + + + Y E V++ +
Sbjct: 84 IVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESVWIWPMDEETKLYFDVN 143
Query: 138 -----KIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
+IE++V V V K ERE + LE + G
Sbjct: 144 EKIRFRIEREVFVDVKPKSPK----ERELEERAQLENEIEG 180
>gi|18314155|ref|NP_560822.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum aerophilum str.
IM2]
gi|18161744|gb|AAL65004.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Pyrobaculum
aerophilum str. IM2]
Length = 191
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +++GY +AV ++ EG++ G VF+ + F GEV++G V + G
Sbjct: 38 KVLREVGYIVAVLNVKVGREGKIVFGDGGTYHRAVFTMLAFMPLDGEVVEGVVENAREMG 97
Query: 101 VFLKCGPVENIYLTCSKMPDYR-YVQAENPVFLSEKNP-KIEKDVVVRVIVIGTKW 154
+ ++ GP+ M D + A ++ E+ ++ VVR + G +
Sbjct: 98 MLVRIGPILGFINKIHIMDDPNIFFDASTKSYIGERTKRRVSVGDVVRARITGVSF 153
>gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
Length = 718
Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 51 AVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVEN 110
+ T+ I EGR + + G+T K+ G+V G V +++ G F++ P +
Sbjct: 603 GIVTISAIDEGRAKRAKS------IIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKE 656
Query: 111 IYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTK 153
+ S++ DYR + E+ V + E +V+V+V I +K
Sbjct: 657 GMIHISQLADYRVGKVEDEVAVGE-------EVIVKVREIDSK 692
>gi|315651726|ref|ZP_07904731.1| polyribonucleotide nucleotidyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315485981|gb|EFU76358.1| polyribonucleotide nucleotidyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 717
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ GIT +I G ++ G V ++L+ G F++ P ++ + SK+ D R + E+ V
Sbjct: 632 IIRGITIEIEAGMIMQGKVVRILEFGAFVELAPGKDGMVHISKLSDRRVEKVEDVV---- 687
Query: 135 KNPKIEKDVVVRVIVI 150
KI +V V+VI +
Sbjct: 688 ---KIGDEVTVKVIKV 700
>gi|240848647|ref|NP_001155474.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)-like
[Acyrthosiphon pisum]
gi|239788882|dbj|BAH71098.1| ACYPI002394 [Acyrthosiphon pisum]
gi|239788884|dbj|BAH71099.1| ACYPI002394 [Acyrthosiphon pisum]
Length = 203
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 26 QRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFR 85
Q S ++ L+ K D+G L++ + IG+ + + G V F + F+ F
Sbjct: 22 QMSRIIIHLNSMLANKVVMDVGLCLSLFDILEIGDSIIYPSEGAYFSKVRFRFVVFRPFV 81
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKN 136
E+L G V G L G E+I++ + M + ++ V++ E +
Sbjct: 82 EEILIGKVKSSSSDGAVLTTGFFEDIFVPAANMQNPSRFDTKDKVWVWEYD 132
>gi|315425802|dbj|BAJ47456.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|315425826|dbj|BAJ47479.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|315427684|dbj|BAJ49280.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|343484641|dbj|BAJ50295.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
Length = 187
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
++LGY + V + GR+ G F+ +T+ EV+ G V ++ G F+
Sbjct: 40 EELGYIIMVIDAKVDKVGRILPRDGSTYHRSTFTLLTYMPLLNEVVLGEVVEITDFGCFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK 138
+ GP++ + M DY +N + + K+ +
Sbjct: 100 RIGPIDGLIHISQIMDDYITYDEKNNMLVGRKSGR 134
>gi|323456227|gb|EGB12094.1| hypothetical protein AURANDRAFT_59851 [Aureococcus anophagefferens]
Length = 179
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G V +TG V +S I + F+ EVLD V V + G F + GP+ ++++ MP
Sbjct: 61 GIVDYDTGCVSVNARYSAILLRPFKNEVLDAVVTHVNELGFFTEAGPL-TVFVSRHAMPP 119
Query: 120 --DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
Y + +K +I+ VVR+ ++G + + A+ +++ D+LG +S
Sbjct: 120 DLQEGYDADVDSWVSDDKEVEIKTKCVVRLRLLGV--MCDATQITAVGTIKDDYLGLIS 176
>gi|297843474|ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K DLG ++V +++I G V G + V F + F+ F GEV+ + +G
Sbjct: 37 KVLADLGLCVSVYDIKSIEGGFVLPGDGAATYKVGFRIVVFRPFVGEVIAAKFKESDSNG 96
Query: 101 VFLKCGPVENIYLTCSKMP 119
+ L G ++IY+ MP
Sbjct: 97 LRLTLGFFDDIYVPAPLMP 115
>gi|451849514|gb|EMD62817.1| hypothetical protein COCSADRAFT_144644 [Cochliobolus sativus
ND90Pr]
Length = 214
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 33 LLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGT 92
+++D + ++G L + L + EG + TG V V F F+ FRGE++ G
Sbjct: 29 VINDKYSNRIIPNIGLCLCMWDLLSASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGR 88
Query: 93 VHKVLKHGVFLKCGPVENIYLTCSKMPD-YRYVQAEN 128
+ + G+ + ++ +P+ + QAEN
Sbjct: 89 IKSSNQEGIIIDLEFTSETFIPYQNLPENSSFSQAEN 125
>gi|255559937|ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
gi|223539824|gb|EEF41404.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
Length = 194
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +LG ++V + +I G + G + V F + F+ F GE++ + + G
Sbjct: 37 KVIANLGLCISVYDVTHIDGGFIFPGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYVQAE 127
+ L G ++IY+ ++P Y Q +
Sbjct: 97 LRLSLGFFDDIYIPSHRLPKPSYSQQD 123
>gi|68480238|ref|XP_715928.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|68480354|ref|XP_715878.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437521|gb|EAK96866.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437573|gb|EAK96917.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|238879020|gb|EEQ42658.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
albicans WO-1]
Length = 195
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 25 LQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIF 84
+Q SI L +A K +LG + + + +I +G ++ G V F I +K F
Sbjct: 22 IQHSISDELNKKYAN-KIIANLGLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPF 80
Query: 85 RGEVLDGTVHKVLKHGVFLKCGPVENIYL 113
RGE+L G V + G+ ++ + I++
Sbjct: 81 RGEILTGWVTECTAKGIKVRMEFFDEIWI 109
>gi|385302410|gb|EIF46542.1| rna polymerase iii subunit required for transcription initiation
[Dekkera bruxellensis AWRI1499]
Length = 189
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K LG +AV + + +G ++ G + VVF + FK F GEVL G + +
Sbjct: 20 NKVIPKLGLVIAVWDVLKVDDGMLKPGDGSIYIKVVFRCVVFKPFVGEVLTGWIESCSEE 79
Query: 100 GV 101
G+
Sbjct: 80 GI 81
>gi|388853764|emb|CCF52485.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Ustilago hordei]
Length = 234
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 45 DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLK 104
D+G +++ + + EG+VR G + V F I F+ F EVL G + + G+ +
Sbjct: 41 DVGLCISLFDILSCSEGKVRFGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIHIT 100
Query: 105 CGPVENIYLTCSKMP 119
G ++IY+ +P
Sbjct: 101 VGFFDDIYVPSHLIP 115
>gi|402074868|gb|EJT70339.1| DNA-directed RNA polymerase III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 209
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K + LG + V L EG + TG V V + F+ F+GEVL + + +K
Sbjct: 36 NKVIQKLGLCICVYDLLWASEGLIGHGTGVVNVNVECRLVVFRPFKGEVLFARISRCVKD 95
Query: 100 GVFLKCGPVENIYLTCSKMPDYRYVQAENPVFL 132
G+ L+ ++I++ ++P+ E +++
Sbjct: 96 GIHLRTDFFDDIFIPFDELPEGATFNHEQSLWV 128
>gi|323304205|gb|EGA57981.1| Rpc25p [Saccharomyces cerevisiae FostersB]
Length = 212
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSFINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>gi|171185361|ref|YP_001794280.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum neutrophilum
V24Sta]
gi|170934573|gb|ACB39834.1| RNA polymerase Rpb7 domain protein [Pyrobaculum neutrophilum
V24Sta]
Length = 191
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ +++GY +AV T + EG++ G +F+ + + GE+++G V V + G
Sbjct: 38 RVLREVGYVVAVLTAKVSREGKIVFGDGGTYHKALFTMLAYMPLDGEIVEGVVENVREMG 97
Query: 101 VFLKCGPV 108
+ ++ GPV
Sbjct: 98 MLVRIGPV 105
>gi|350561194|ref|ZP_08930033.1| transcription-repair coupling factor [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781301|gb|EGZ35609.1| transcription-repair coupling factor [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 1156
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 7 LPWNVVVPAENLDA-------KGPMLQRSIVVRLLDDFARRKATKD--LGYFLAVTTLEN 57
LP++V P E + + + P L+R IVV + +R + LG LA+T ++
Sbjct: 82 LPFDVFSPHEEIVSERLRTLYRLPSLKRGIVVVPVATLMQRVTPRQWLLGQCLALTAGQD 141
Query: 58 IGEGRVRENTGEVLFPVVFSGITFKIF--RGEVLD 90
+ GR+RE+ + + V +T F RGE+LD
Sbjct: 142 LDRGRLRESLADAGYQSVHQVLTHGEFALRGEILD 176
>gi|241948883|ref|XP_002417164.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
gi|223640502|emb|CAX44756.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
Length = 195
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 25 LQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIF 84
+Q SI L +A K +LG + + + +I +G ++ G V F I +K F
Sbjct: 22 IQHSISDELNKKYAN-KIIANLGLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPF 80
Query: 85 RGEVLDGTVHKVLKHGVFLKCGPVENIYL 113
RGE+L G V + G+ ++ + I++
Sbjct: 81 RGEILTGWVTECTPKGIKVRMEFFDEIWI 109
>gi|305662653|ref|YP_003858941.1| DNA-directed RNA polymerase [Ignisphaera aggregans DSM 17230]
gi|304377222|gb|ADM27061.1| DNA-directed RNA polymerase [Ignisphaera aggregans DSM 17230]
Length = 182
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
++LG LA+T ++ G + G V F +T+ GE+++G V + + G+ +
Sbjct: 40 RNLGIVLAITNIKVDPIGYIPMGDGAPYHRVEFDVLTYVPIVGEIVEGIVETIGRMGITI 99
Query: 104 KCGPVENIYLTCSKMPD--YRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161
+ GP+E ++ S++ D RY N + I + +VR + +R
Sbjct: 100 RIGPIEG-FVHISQISDDEVRYDPVSNTLICKNTKRVISQGDIVRARITTVSLGPQQRLP 158
Query: 162 QALVSLEGDFLG 173
+ ++++ +LG
Sbjct: 159 RINMTMKQPYLG 170
>gi|419720425|ref|ZP_14247658.1| polyribonucleotide nucleotidyltransferase [Lachnoanaerobaculum
saburreum F0468]
gi|383303378|gb|EIC94830.1| polyribonucleotide nucleotidyltransferase [Lachnoanaerobaculum
saburreum F0468]
Length = 700
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ GIT +I G ++ G V ++L+ G F++ P ++ + SK+ D R + E+ V
Sbjct: 615 IIRGITIEIEAGMIMQGKVVRLLEFGAFVELAPGKDGMVHISKLSDRRVEKVEDVV---- 670
Query: 135 KNPKIEKDVVVRVIVI 150
KI +V V+VI +
Sbjct: 671 ---KIGDEVTVKVIKV 683
>gi|307594773|ref|YP_003901090.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
gi|307549974|gb|ADN50039.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
Length = 196
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
+ +D+G ++A+ +E G V G V F + + EV++G V + G
Sbjct: 37 RVERDVGVYVAIFDVEVSKRGVVIFGDGATYNRVRFKALVYTPLINEVVEGEVVRTEDFG 96
Query: 101 VFLKCGPVENIYLTCSKMPDYRYV-QAENPVFLSEKN-PKIEKDVVVRVIVIGTKWLEA 157
F++ GP++ + M D + ++ F+ E++ ++ + VVR V+G ++ A
Sbjct: 97 AFVRIGPIDALIHRTQMMEDNVVLYDKQSGAFVGERSRRRLGRGDVVRARVVGVSYVTA 155
>gi|403177922|ref|XP_003336364.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173264|gb|EFP91945.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 238
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S++ ++ K DLG +A+ L + EG+V G + V F+ + F+ F GE
Sbjct: 24 SVITAEINRKYSNKVLPDLGLCIALFDLLDASEGKVLYGDGCLYHRVEFTLVVFRPFIGE 83
Query: 88 VLDGTVHKVLKHGVFLKCGPVENIYLTC 115
+ GTV GV + ++I++ C
Sbjct: 84 HMIGTVKSSTPSGVRVSLKFFDDIHIPC 111
>gi|429854331|gb|ELA29351.1| DNA-directed RNA polymerase iii polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 197
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAK-GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG 59
MF+ K+ V + E+ K G ++ +I + + K + +G + + L
Sbjct: 1 MFILTKIADLVEIAPEDFRKKSGTAIEDNINAKYAN-----KVIQKIGLCICLYDLLWTS 55
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
EG + TG V V F I F+ F+GEV+ G + G+ L+ ++I++ ++P
Sbjct: 56 EGLIGHGTGLVNVNVEFRMIVFRPFKGEVMIGRIRSSTPAGINLRTDFFDDIFIPFDELP 115
Query: 120 D-YRYVQAENPVFLSEKNPKI--EKDVVVRVIVIGTKW 154
+ Y +E + + ++ + +VR VI +W
Sbjct: 116 EGAEYNHSEQLWIWNIEGDRLFYDNHEMVRFQVIDEEW 153
>gi|330833934|ref|YP_004408662.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
gi|329566073|gb|AEB94178.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
Length = 176
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 7/177 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF +K V +P E G L ++ + +L++ + + KDLG L V E
Sbjct: 1 MFKVIKAKGVVRIPPELF---GEPLSKT-ALDILNNEYKERLFKDLGLVLTVIKANVSEE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V F +TF EV++G + +V +G+++ GP++ + + S++ D
Sbjct: 57 GMIVFGDGATYHEVEFELLTFLPIIQEVVEGDITQVDNYGIYVNMGPMDGL-VHVSQIGD 115
Query: 121 YRY-VQAENPVFLSEKNPK-IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
Y + + + EK+ K +K +VR V+ + R + ++++ LG +
Sbjct: 116 DNYKFDSVRGILVGEKSKKSFQKGDLVRARVMTVSSTASNRPPRIGLTMKQTGLGKI 172
>gi|358379479|gb|EHK17159.1| hypothetical protein TRIVIDRAFT_66115 [Trichoderma virens Gv29-8]
Length = 193
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 25 LQRSIVVRLLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
+ +V + D+ + A K +G +++ + EG + TG V V F I F
Sbjct: 18 FSKHSIVAIEDNINAKYANKVVQKIGLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP---DYRYVQAENPVFLSEKNPK 138
+ F+GEV+ G + G+ L+ ++I++ ++P +Y + + E+
Sbjct: 78 RPFKGEVMLGRIRSSTPSGIHLRTDFFDDIFIPYEELPQGAEYNHSEQIWIWNFDEERLF 137
Query: 139 IEKDVVVRVIVIGTKW 154
+ +VR VI +W
Sbjct: 138 YDNHEMVRFQVIDEEW 153
>gi|408394367|gb|EKJ73575.1| hypothetical protein FPSE_06193 [Fusarium pseudograminearum CS3096]
Length = 193
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K + +G + + L EG + TG V F + F+ F+GEV+ G + G
Sbjct: 37 KVIQKIGLCICLYDLHWASEGLIGHGTGLVNVNAEFRMVVFRPFKGEVMIGRIRSSTPAG 96
Query: 101 VFLKCGPVENIYLTCSKMP---DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKW 154
+ L+ ++I++ ++P +Y + + L E + +VR VI +W
Sbjct: 97 INLRTDFFDDIFVPFEELPEGAEYNHSEQLWIWNLEEDRLFYDNHEMVRFQVIDEEW 153
>gi|323336829|gb|EGA78092.1| Rpc25p [Saccharomyces cerevisiae Vin13]
Length = 212
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>gi|167042375|gb|ABZ07103.1| putative RNA polymerase Rpb7, N-terminal domain protein [uncultured
marine crenarchaeote HF4000_ANIW97M7]
Length = 213
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 41/98 (41%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
DLGY + + + G++ G V F +TF E++ G + + G F+
Sbjct: 40 SDLGYIIMILDADVEPMGKIIAGDGATFHRVTFDALTFYPKLQEIIYGELVDITDFGAFV 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
+ GP + + M DY + V L+ ++ + K
Sbjct: 100 RIGPTDALLHLSQVMDDYLKSNIASGVILANQSGRTLK 137
>gi|112490174|pdb|2CKZ|B Chain B, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25.
gi|112490176|pdb|2CKZ|D Chain D, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 218
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>gi|6322705|ref|NP_012778.1| Rpc25p [Saccharomyces cerevisiae S288c]
gi|549722|sp|P35718.1|RPC8_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III 25 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C25
gi|396435|emb|CAA80954.1| unknown function [Saccharomyces cerevisiae]
gi|486247|emb|CAA81985.1| RPC25 [Saccharomyces cerevisiae]
gi|516561|gb|AAA20241.1| RNA polymerase III C25 subunit [Saccharomyces cerevisiae]
gi|151941663|gb|EDN60025.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190409694|gb|EDV12959.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
gi|256271085|gb|EEU06184.1| Rpc25p [Saccharomyces cerevisiae JAY291]
gi|285813121|tpg|DAA09018.1| TPA: Rpc25p [Saccharomyces cerevisiae S288c]
gi|323308337|gb|EGA61583.1| Rpc25p [Saccharomyces cerevisiae FostersO]
gi|349579425|dbj|GAA24587.1| K7_Rpc25p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764539|gb|EHN06061.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298294|gb|EIW09392.1| Rpc25p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 212
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>gi|158339001|ref|YP_001520178.1| polynucleotide phosphorylase/polyadenylase [Acaryochloris marina
MBIC11017]
gi|158309242|gb|ABW30859.1| polyribonucleotide nucleotidyltransferase [Acaryochloris marina
MBIC11017]
Length = 646
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ +G+T K+ G+V G V +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 550 IIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRVGKVEDEVTVGD 609
Query: 135 K 135
+
Sbjct: 610 E 610
>gi|359461386|ref|ZP_09249949.1| polynucleotide phosphorylase/polyadenylase [Acaryochloris sp. CCMEE
5410]
Length = 646
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ +G+T K+ G+V G V +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 550 IIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRVGKVEDEVTVGD 609
Query: 135 K 135
+
Sbjct: 610 E 610
>gi|187471099|sp|B0C1M5.2|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 716
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ +G+T K+ G+V G V +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 620 IIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRVGKVEDEVTVGD 679
Query: 135 K 135
+
Sbjct: 680 E 680
>gi|427786869|gb|JAA58886.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 198
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 33 LLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVL 89
+++ RR A K ++G +A+ + I + R+ G V F + F+ F EVL
Sbjct: 26 IVEQLNRRLANKVVINVGLCIALYDITKIEDSRILPGDGSFHTTVQFRYVVFRPFMDEVL 85
Query: 90 DGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
G + + G+++ G E+I +T M
Sbjct: 86 IGKIRSSSQEGIYVSMGFFEDILVTPDGM 114
>gi|401624904|gb|EJS42941.1| rpc25p [Saccharomyces arboricola H-6]
Length = 213
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>gi|358398243|gb|EHK47601.1| hypothetical protein TRIATDRAFT_83183 [Trichoderma atroviride IMI
206040]
Length = 193
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 25 LQRSIVVRLLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
+ +V + D+ + A K +G +++ + EG + TG V V F I F
Sbjct: 18 FSKHSIVAIEDNINAKYANKVVQKIGLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP---DYRYVQAENPVFLSEKNPK 138
+ F+GEV+ G + G+ L+ ++I++ ++P +Y + + E+
Sbjct: 78 RPFKGEVMLGRIRSSTPSGIHLRTDFFDDIFVPYEELPQGAEYNHSEQIWIWNFDEERLF 137
Query: 139 IEKDVVVRVIVIGTKW 154
+ +VR VI +W
Sbjct: 138 YDNHEMVRFQVIDEEW 153
>gi|342186474|emb|CCC95960.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 190
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
EGRV ++ G V F + + + FK+ RGEV+D V V + G + V +Y++ +M
Sbjct: 75 EGRVLDD-GSVSFLIQYEALVFKLHRGEVVDVMVLSVEREGWWGDVMGVGRMYISRGQM- 132
Query: 120 DYRYVQAENPV----FLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
D +V + V + + +++ +VRV V+ A+ S+ G LGP+
Sbjct: 133 DSDWVYESDGVKGIWITKDGSRSVKEGEIVRVRVVAET--PQSEGVLAVGSMVGKHLGPL 190
>gi|320580456|gb|EFW94678.1| RNA polymerase III subunit C25 [Ogataea parapolymorpha DL-1]
Length = 206
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K LG +AV L + +G ++ G V V F + FK GEVL G +
Sbjct: 36 NKVIHKLGLVVAVWDLLQVDDGLLKPGDGAVFINVRFRIVVFKPVVGEVLTGWIESCSDE 95
Query: 100 GVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
G+ + +I++ + M + Y A++ ++ +
Sbjct: 96 GIKVNMNFFNDIFIPKNYMFEGSYYSADDNAWIWQ 130
>gi|145507598|ref|XP_001439754.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406949|emb|CAK72357.1| unnamed protein product [Paramecium tetraurelia]
Length = 410
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 45 DLGYFLAVTTLENIGEGRVR------ENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLK 98
D+GY + + N + + E G V + F I FK+ E++D V K
Sbjct: 43 DVGYIICINKCMNYNQNQDEQIDALIEEDGTVKVVIKFEAIVFKVQEKEIVDVEVIKCEA 102
Query: 99 HGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKW-LE 156
V+ K GP++ I + K+P +Y + + V+LS + KD VI GTK ++
Sbjct: 103 QAVYAKLGPIDFI-IPRDKLPTNYTF----SNVYLSLLTQESYKDQDEEVIKQGTKLRVQ 157
Query: 157 AER------EFQALVSLEGDFLGPV 175
++ + +A L GD L +
Sbjct: 158 VQKTHYKQGKLRAFAHLTGDNLDNI 182
>gi|340515872|gb|EGR46123.1| predicted protein [Trichoderma reesei QM6a]
Length = 193
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 25 LQRSIVVRLLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
+ +V + D+ + A K +G +++ + EG + TG V V F I F
Sbjct: 18 FSKHSIVAIEDNINAKYANKVVQKIGLCISLFDVLWTSEGLIGHGTGLVNVNVEFRMIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP---DYRYVQAENPVFLSEKNPK 138
+ F+GEV+ G + G+ L+ ++I++ ++P +Y + + E+
Sbjct: 78 RPFKGEVMLGRIRSSTPSGIHLRTDFFDDIFVPYEELPQGAEYNHSEQIWIWNFDEERLF 137
Query: 139 IEKDVVVRVIVIGTKW 154
+ +VR VI +W
Sbjct: 138 YDNHEMVRFQVIDEEW 153
>gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
ATCC 49989]
gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
ATCC 49989]
Length = 696
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 86 GEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEK 135
GEV +G V +++ G F++ P + L SKM DYR + E+ + L +K
Sbjct: 628 GEVYEGEVKRIMAFGAFIEVLPGKEGLLHISKMADYRVDKVEDVMNLGDK 677
>gi|383318512|ref|YP_005379353.1| DNA-directed RNA polymerase subunit E' [Methanocella conradii
HZ254]
gi|379319882|gb|AFC98834.1| DNA-directed RNA polymerase, subunit E' [Methanocella conradii
HZ254]
Length = 194
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ KV+L + +P + L+ L++ I + D R K LG +AV + +IGE
Sbjct: 1 MYRKVRLVDIIRIPPQRLEED---LEQVINETIRDKLEGR-IDKALGSIVAVLDIVDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G + G V + V F I ++ E+++G V +++ G F+ GP++ + +
Sbjct: 57 GHILIGDGAVYYEVTFDAIAYRPELQEIVEGVVVEIVAFGAFVSVGPIDCLVHVSQVADE 116
Query: 121 YRYVQAENPVFLSEKNPK 138
+ +N +S++ K
Sbjct: 117 FMSYDEKNARLVSKETNK 134
>gi|448566865|ref|ZP_21637120.1| DNA-directed RNA polymerase subunit E' [Haloferax prahovense DSM
18310]
gi|445713454|gb|ELZ65231.1| DNA-directed RNA polymerase subunit E' [Haloferax prahovense DSM
18310]
Length = 190
Score = 36.2 bits (82), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +V+L V VP +L P V RLL D + +D+G ++V + +IGE
Sbjct: 1 MYKRVRLKDTVEVPPRHLGDVTP----ERVKRLLQDKLEGRMDEDVGSVVSVVNVNDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G V + V + F IT+ EV+DG V +V++ G F+ GPV+ + +
Sbjct: 57 GTVLPSRPGVYYEADFDAITYDPDMQEVVDGIVVEVVEFGAFVGIGPVDGLLHVSQISDE 116
Query: 121 YRYVQAENPVFLS-EKNPKIEKDVVVRVIVI 150
Y EN S E N + D VR ++
Sbjct: 117 YLAYDGENQQLASTESNQTLAVDDEVRARIV 147
>gi|57641634|ref|YP_184112.1| DNA-directed RNA polymerase subunit E' [Thermococcus kodakarensis
KOD1]
gi|57159958|dbj|BAD85888.1| DNA-directed RNA polymerase, subunit E' [Thermococcus kodakarensis
KOD1]
Length = 190
Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%)
Query: 44 KDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL 103
+D G LA+ +E I EG + G +F+ + ++ EV++G V +++ +G F+
Sbjct: 40 RDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFI 99
Query: 104 KCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
+ GP++ + M DY +N F+ ++ ++ K
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLK 137
>gi|427418910|ref|ZP_18909093.1| polyribonucleotide nucleotidyltransferase [Leptolyngbya sp. PCC
7375]
gi|425761623|gb|EKV02476.1| polyribonucleotide nucleotidyltransferase [Leptolyngbya sp. PCC
7375]
Length = 719
Score = 36.2 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ GITFK G+V G V +++ G F++ P + + S++ DYR + E+ V + E
Sbjct: 621 IIEGITFKPSAGDVYVGKVTRIIPIGAFVEYRPGKEGMIHISQLADYRVNKVEDEVTVGE 680
Query: 135 K 135
+
Sbjct: 681 E 681
>gi|386874922|ref|ZP_10117141.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
gi|386807285|gb|EIJ66685.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
Length = 198
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+++ V +L + DLGY + + + G++ G V F +TF
Sbjct: 19 GTTLKKA-AVNILKEKYESMINADLGYIIMILDAKVDEMGKMIAGDGGTFHKVEFEALTF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
E++ G + + G F++ GP + + M DY ++ + L+ ++ + K
Sbjct: 78 YPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDDYLKSDVKSGMILANQSGRTLK 137
>gi|327310158|ref|YP_004337055.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
gi|326946637|gb|AEA11743.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
Length = 189
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K+ +DLG+ +AV + EG + G VF +T+ GEV+ G V + G
Sbjct: 38 KSFRDLGFVVAVLGAKVAREGVILFGDGATYHRAVFDLLTYVPLDGEVVYGIVESAREVG 97
Query: 101 VFLKCGPVENIYLTCSKMPDYRYV-QAENPVFLSEKNP-KIEKDVVVRVIVIGTKWLEAE 158
V ++ GPV M + + A F+ E++ K+ +VR + G ++ +
Sbjct: 98 VMVRIGPVLGFINKIHLMEEPNILFDASTKSFIGERSKRKVGVGDMVRARITGVSYVAQK 157
Query: 159 REFQALVSLEGDFLGP 174
V + GP
Sbjct: 158 EGLDLAVRITMTMRGP 173
>gi|407465243|ref|YP_006776125.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
gi|407048431|gb|AFS83183.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
Length = 198
Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+++ V +L + DLGY + + + G++ G V F +TF
Sbjct: 19 GTTLKKA-AVNILKEKYESMINADLGYIIMILDAKVDEMGKMIAGDGGTFHKVEFEALTF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
E++ G + + G F++ GP + + M DY ++ + L+ ++ + K
Sbjct: 78 YPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDDYLKSDVKSGMILANQSGRTLK 137
>gi|71017639|ref|XP_759050.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
gi|46098719|gb|EAK83952.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
Length = 249
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 45 DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLK 104
D+G +++ + + EG+VR G + V F I F+ F EVL G + + G+ +
Sbjct: 41 DVGLCISLFDILSCSEGKVRFGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIRVS 100
Query: 105 CGPVENIYLTCSKMP 119
G ++IY+ +P
Sbjct: 101 MGFFDDIYIPYHLIP 115
>gi|407462897|ref|YP_006774214.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046519|gb|AFS81272.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
koreensis AR1]
Length = 198
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+++ V +L + DLGY + + + G++ G V F +TF
Sbjct: 19 GTTLKKA-AVNILKEKYESMINADLGYIIMILDAKVDEMGKMIAGDGGTFHRVQFEALTF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
E++ G + + G F++ GP + + M DY ++ + L+ ++ + K
Sbjct: 78 YPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDDYLKSDVKSGMILANQSGRTLK 137
>gi|50290635|ref|XP_447750.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527061|emb|CAG60697.1| unnamed protein product [Candida glabrata]
Length = 216
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF+ KL V +P + S + L+ K +G ++V L + E
Sbjct: 1 MFILTKLKDLVRIPPDQFHRDA----VSAITHELNVKYSNKVVPHVGLSVSVYDLLEVDE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLK-CGPVENIYLTCSKMP 119
G++R G V F + FK F GE+L G + + G+ + G ++I++ +
Sbjct: 57 GQLRPGDGASYINVTFRCVVFKPFAGEILTGWIKRCDGEGIQVSMMGLFDDIFIPKKMLF 116
Query: 120 DYRYVQAEN 128
+ Y E+
Sbjct: 117 EGSYYSPED 125
>gi|443898780|dbj|GAC76114.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 326
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 45 DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLK 104
D+G +++ + + EG+VR G + V F + F+ F EVL G + + G+ +
Sbjct: 125 DVGLCVSLFDILSCSEGKVRFGDGCLYHHVTFRLVVFRPFTQEVLTGKIKSSDEAGIRIT 184
Query: 105 CGPVENIYLTCSKMP 119
G ++IY+ +P
Sbjct: 185 MGFFDDIYVPAHLIP 199
>gi|161528743|ref|YP_001582569.1| DNA-directed RNA polymerase subunit E' [Nitrosopumilus maritimus
SCM1]
gi|160340044|gb|ABX13131.1| DNA-directed RNA polymerase [Nitrosopumilus maritimus SCM1]
Length = 198
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+++ V +L + DLGY + + + G++ G V F +TF
Sbjct: 19 GTTLKKA-AVNILKEKYESMINADLGYIIMILDAKVDEMGKMIAGDGGTFHRVQFEALTF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
E++ G + + G F++ GP + + M DY ++ + L+ ++ + K
Sbjct: 78 YPKLQEIVQGEIVDITDFGAFVRIGPTDALLHLSQVMDDYLKSDVKSGMILANQSGRTLK 137
>gi|401840255|gb|EJT43152.1| RPC25-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 212
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>gi|365759736|gb|EHN01510.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 212
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>gi|343429728|emb|CBQ73300.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Sporisorium reilianum SRZ2]
Length = 244
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 45 DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLK 104
D+G +++ + + EG+VR G + V F I F+ F EVL G + + G+ +
Sbjct: 41 DVGLCISLFDILSCSEGKVRFGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIRIT 100
Query: 105 CGPVENIYLTCSKMP 119
G ++IY+ +P
Sbjct: 101 LGFFDDIYVPFHLIP 115
>gi|296422646|ref|XP_002840870.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637096|emb|CAZ85061.1| unnamed protein product [Tuber melanosporum]
Length = 194
Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 23 PMLQRSIVVRLLDDFARRKATK---DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGI 79
P L D + A K ++G +++ L ++ EG + ++ G + V F I
Sbjct: 16 PTFAHPTATALEDQINEKYANKVVHNIGLCISLYDLSSVSEGMIGQDGGAHV-NVEFRMI 74
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFL---SEKN 136
F+ F+GEVL G + GV ++ + +++ + + + + V++ +++
Sbjct: 75 VFRPFKGEVLTGRISSATAAGVKVRTDFFDEVFVPAAALFEGSRFDGKEQVWIWRNDDQD 134
Query: 137 PKIEKDVVVRVIVIG 151
++K+ V+R V G
Sbjct: 135 FYMDKNEVIRFRVEG 149
>gi|310793419|gb|EFQ28880.1| RNA polymerase III subunit Rpc25 [Glomerella graminicola M1.001]
Length = 197
Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 40 RKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH 99
K + +G + + L EG + TG V V F I F+ F+GEV+ G +
Sbjct: 36 NKVIQKIGLCICLYDLLWTSEGLIGHGTGLVNVNVEFRLIVFRPFKGEVMFGRIRSSTPA 95
Query: 100 GVFLKCGPVENIYLTCSKMPD 120
G+ L+ ++I++ ++P+
Sbjct: 96 GINLRTDFFDDIFIPFDELPE 116
>gi|71409692|ref|XP_807177.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70871122|gb|EAN85326.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 125
Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 10 NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENT 67
N+ P+ +L+ K L ++ +DD+A + A +DLG E G GRVRENT
Sbjct: 37 NLRTPSPSLEDKIGQLLGALRSNGVDDWAGKPAQEDLGVRFFSQPREGAGNGRVRENT 94
>gi|221113754|ref|XP_002163071.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Hydra
magnipapillata]
Length = 202
Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G + S+ L FA K ++G + + + +IG+ + G PV F I F
Sbjct: 19 GHDFKSSLEFSLNKKFAN-KVVHNVGLCIVLFDITHIGDSYILPGNGASHTPVTFRFIVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD-YRYVQAENPVFLSEKNPKIE 140
+ F EVL V + GV + G ++I++ + ++V AE + +
Sbjct: 78 RPFIDEVLVAKVKSCTREGVQVSLGFFDDIFIPYEYLQQKSKFVDAEQLWVWQYETEEGS 137
Query: 141 KDVV------VRVIVIGTKWLEAEREFQALVSLEGD 170
D+ +R+ VI ++L+ E A ++EG+
Sbjct: 138 HDLYMDINEEIRIRVIDEEFLDLTPEGPAPPTIEGE 173
>gi|282897293|ref|ZP_06305295.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
gi|281197945|gb|EFA72839.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
Length = 458
Score = 35.4 bits (80), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 51 AVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVEN 110
+ T+ I E R + + G+T K+ G+V G V +++ G F++ P +
Sbjct: 343 GIVTISAIDESRAKRAKS------IIQGMTRKLHEGDVYLGRVTRIIPIGAFVEFLPGKE 396
Query: 111 IYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKW 154
+ S++ DYR + E+ V + E +V+V+V I +K
Sbjct: 397 GMIHISQLADYRVGKVEDEVAVGE-------EVIVKVREIDSKG 433
>gi|312077201|ref|XP_003141199.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
gi|307763636|gb|EFO22870.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
Length = 225
Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 1 MFLKVKLPWNV-VVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG 59
MF+ L NV + P + + PML + RL + FA K LG + + L +IG
Sbjct: 1 MFVLAMLEDNVRIKPHQFGEPFEPMLMK----RLNEQFAN-KIVPGLGLCIIIYDLVDIG 55
Query: 60 EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP 119
+ G V F + F+ F EV++ V G+ L E+I++ ++P
Sbjct: 56 ASYILPGDGSTHTKVKFRFVVFRPFIDEVIEAKVLSSNAEGLMLSVIFFEDIFIPAHRLP 115
Query: 120 DYRYVQAENPVFLSEKNPK 138
+ E ++ + P+
Sbjct: 116 QPSVFEEEEQIWYWDYQPE 134
>gi|71650000|ref|XP_813707.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878617|gb|EAN91856.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 125
Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 10 NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENT 67
N+ P+ +L+ K L ++ +DD+A + A +DLG E G GRVRENT
Sbjct: 37 NLRTPSPSLEDKIGQLLGALRSNGVDDWAGKPAQEDLGVRFFSQPREGAGNGRVRENT 94
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.142 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,855,104,277
Number of Sequences: 23463169
Number of extensions: 112336785
Number of successful extensions: 223301
Number of sequences better than 100.0: 685
Number of HSP's better than 100.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 222560
Number of HSP's gapped (non-prelim): 686
length of query: 182
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 49
effective length of database: 9,238,593,890
effective search space: 452691100610
effective search space used: 452691100610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)