BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030170
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 102/178 (57%), Gaps = 9/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L N+ + G L+ ++V +L+ D + G+ +AVT +ENIG+
Sbjct: 1 MFFHIVLERNMQLHPRYF---GRNLRDNLVSKLMKD-VEGTCSGRHGFVVAVTGIENIGK 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP- 119
G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +P
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
Query: 120 DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
D + + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 116 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana
GN=RPB19 PE=1 SV=1
Length = 176
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
G L+ ++V +L+ D + G+ +A+T ++ IG+G +R+ TG V FPV + + F
Sbjct: 19 GRNLKENLVSKLMKD-VEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN-PVF-LSEKNPKI 139
+ F+GE+L+ V V K G F + GPV+ I+++ +PD QA + P + S+ + KI
Sbjct: 78 RPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKI 136
Query: 140 EKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+K+ VR+ +IGT+ ++A F + +++ DFLG ++
Sbjct: 137 QKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>sp|Q54P04|RPB7_DICDI DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium
discoideum GN=polr2g PE=3 SV=1
Length = 172
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 7/157 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITF 81
GP L +I + L T G+ + +T+++ + +G+V E++G V+F V + I F
Sbjct: 19 GPNL-FTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIF 77
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN--PVFLSEK-NPK 138
K F+GEVLD V KV G F + GP+ +I+++ +P A++ P F+SE + K
Sbjct: 78 KPFKGEVLDAIVTKVTNLGFFAEAGPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSK 136
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
I KD VR+ + GT+ ++A F A+ S+ D+LG +
Sbjct: 137 ISKDDEVRLQIKGTR-VDATEIF-AIGSIREDYLGVI 171
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G
PE=2 SV=1
Length = 172
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
MF + L +++ GP L ++ +L + T G+ +AVTT++NIG
Sbjct: 1 MFYHISLEHEILLHPRYF---GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGA 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S +
Sbjct: 57 GVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSE 116
Query: 121 YRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 176
+ NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS
Sbjct: 117 MEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1
Length = 172
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 22 GPMLQRSIVVRLLDDFARRKATKDLGYFLAV--TTLENIGEGRVRENTGEVLFPVVFSGI 79
GP +Q + +LL D + GY + V + +I +GRV G F V + +
Sbjct: 20 GPRMQDYLKAKLLAD-VEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAV 78
Query: 80 TFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM-PDYRYVQAENPVFLSEKNPK 138
++ FRGEV+D V V K G F GP+ N++++ + PD ++ NP S ++
Sbjct: 79 LWRPFRGEVVDAIVTTVNKMGFFANIGPL-NVFVSSHLVPPDMKFDPTANPPNYSGEDQV 137
Query: 139 IEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLG 173
IEK VR+ ++GT+ E A+ +++ D+LG
Sbjct: 138 IEKGSNVRLKIVGTR--TDATEIFAIATMKEDYLG 170
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1
SV=1
Length = 171
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIG- 59
MF L N+ + GP +++ + +LL++ T GY L V +NI
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKTKLLEE-VEGSCTGKFGYILCVLDYDNIDI 56
Query: 60 -EGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKM 118
GR+ G F V + + FK F+GEV+DGTV +HG ++ GP++ +++T M
Sbjct: 57 QRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLM 115
Query: 119 P-DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 175
P D + NP I +RV + G + A+ S++ D+LG +
Sbjct: 116 PQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE 60
M+ +++ V VP E G L+ ++ L++ + R KD+G+ L++ +++IGE
Sbjct: 1 MYKILEIADVVKVPPEEF---GKDLKETVKKILMEKYEGR-LDKDVGFVLSIVDVKDIGE 56
Query: 61 GRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPD 120
G+V G PVVF + + E+++G V V++ G F++ GP++ + M D
Sbjct: 57 GKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDD 116
Query: 121 YRYVQAENPVFLSEKNPK---IEKDVVVRVIVIGTKWLEAEREFQALVSL 167
Y + + ++ K I V R++ I L+AER+ + ++L
Sbjct: 117 YVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS---LKAERKRGSKIAL 163
>sp|P39466|RPOE_SULAC DNA-directed RNA polymerase subunit E OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoE PE=1 SV=2
Length = 183
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
Query: 29 IVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEV 88
I +++L + K KD+G L + + EG + G V F + + EV
Sbjct: 25 IAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEV 84
Query: 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPK-IEKDVVVRV 147
++G V +V +GV++ GPV+ + D + + + EK+ K I+K VR
Sbjct: 85 IEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGEKSKKSIQKGDRVRA 144
Query: 148 IVIGTKWLEAEREFQALVSLEGDFLGPVSCEN 179
++I + + R + ++++ +LG + N
Sbjct: 145 MIISAS-MSSGRLPRIALTMKQPYLGKIEWIN 175
>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
discoideum GN=polr3h-1 PE=2 SV=1
Length = 252
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 31 VRLLDDFARRKATK----DLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRG 86
V+ ++D +K T + G F+A+ + G+ V G V F + FK F+G
Sbjct: 22 VQTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKG 81
Query: 87 EVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKN 136
EVL+G + K + + + G IYL ++P+ E ++ E N
Sbjct: 82 EVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEWN 131
>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1
Length = 203
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHG 100
K +++G + V IGEG ++ G VVF I F+ FRGEV+ G + + G
Sbjct: 37 KVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEG 96
Query: 101 VFLKCGPVENIYL-------TCSKMPDYR 122
+ + ++I++ C PD R
Sbjct: 97 IRVTISFFDDIFIPKDMLFDPCVFRPDER 125
>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1
SV=1
Length = 212
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 SIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGE 87
S + L++ K ++G + + L + EG+++ G V F + FK F GE
Sbjct: 24 SAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGE 83
Query: 88 VLDGTVHKVLKHGV 101
++ G + K G+
Sbjct: 84 IVTGWISKCTAEGI 97
>sp|B0C1M5|PNP_ACAM1 Polyribonucleotide nucleotidyltransferase OS=Acaryochloris marina
(strain MBIC 11017) GN=pnp PE=3 SV=2
Length = 716
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ +G+T K+ G+V G V +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 620 IIAGMTRKLAAGDVFLGKVTRIIPIGAFVEIAPSKEGMIHISQLADYRVGKVEDEVTVGD 679
Query: 135 K 135
+
Sbjct: 680 E 680
>sp|Q6GNX5|TM203_XENLA Transmembrane protein 203 OS=Xenopus laevis GN=tmem203 PE=2 SV=1
Length = 136
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 9 WNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE----GRVR 64
WNV +P D + VRL D +R+A L + L + +L+ I E ++
Sbjct: 47 WNVFIPFFTADGLSTYFTTIVTVRLFQDGEKRQAVLRLFWILTILSLKFIFEMLLCQKLV 106
Query: 65 ENTGEVLFPVVFSGI 79
E + E+ + ++ S I
Sbjct: 107 EQSRELWYGLIMSPI 121
>sp|Q5XH84|TM203_XENTR Transmembrane protein 203 OS=Xenopus tropicalis GN=tmem203 PE=2
SV=1
Length = 136
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 9 WNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE----GRVR 64
WN+ +P D + VRL D +R+A L + L + +L+ + E ++
Sbjct: 47 WNIFIPFFTADGLSTYFTTIVTVRLFQDGEKRQAVLRLFWILTILSLKFVFEMLLCQKLV 106
Query: 65 ENTGEVLFPVVFS 77
E + E+ F ++ S
Sbjct: 107 EQSRELWFGLIMS 119
>sp|A5GRD7|PNP_SYNR3 Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp.
(strain RCC307) GN=pnp PE=3 SV=1
Length = 719
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPV 130
+ G+T ++ GE DG V +V+ G F++ P + + S++ D R + E+ V
Sbjct: 620 IIEGLTRRVSEGEYFDGKVTRVIPIGAFVEILPGKEGMIHISQLSDQRVEKVEDVV 675
>sp|B2J2V3|PNP_NOSP7 Polyribonucleotide nucleotidyltransferase OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=pnp PE=3 SV=1
Length = 718
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ G+T K+ G+V G + +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 621 IIQGMTRKLHEGDVYAGRITRIIPIGAFVEFLPGKEGMIHISQLADYRVGKVEDEVAVGD 680
Query: 135 KNPKIEKDVVVRVIVIGTK 153
+V+++V I K
Sbjct: 681 -------EVIIKVREIDNK 692
>sp|Q3M7Z9|PNP_ANAVT Polyribonucleotide nucleotidyltransferase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=pnp PE=3 SV=1
Length = 718
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ G+T K+ G+V G V +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 621 IVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQLADYRVGKVEDEVAVGD 680
Query: 135 KNPKIEKDVVVRVIVIGTK 153
+V+V+V I K
Sbjct: 681 -------EVIVKVREIDNK 692
>sp|Q8YP11|PNP_NOSS1 Polyribonucleotide nucleotidyltransferase OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=pnp PE=1 SV=1
Length = 718
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ G+T K+ G+V G V +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 621 IVQGMTRKLNEGDVYAGRVTRIIPIGAFVEFLPGKEGMIHISQLADYRVGKVEDEVAVGD 680
Query: 135 KNPKIEKDVVVRVIVIGTK 153
+V+V+V I K
Sbjct: 681 -------EVIVKVREIDNK 692
>sp|B9JT86|CYSD_AGRVS Sulfate adenylyltransferase subunit 2 OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=cysD PE=3 SV=1
Length = 316
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 8/51 (15%)
Query: 96 VLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN----PVFLSEKNPKIEKD 142
+++ G ++ P+ N +++ +RY+QAEN P++ +EK P IE+D
Sbjct: 188 MIRRGESVRAFPLSN----WTEVDIWRYIQAENIPLVPLYFAEKRPFIERD 234
>sp|Q8DGW9|PNP_THEEB Polyribonucleotide nucleotidyltransferase OS=Thermosynechococcus
elongatus (strain BP-1) GN=pnp PE=3 SV=1
Length = 715
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 74 VVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS 133
G+T K+ G+V G V +++ G F++ P + + S++ +YR + E+ V
Sbjct: 619 AAIEGLTRKLNAGDVYLGRVTRIIPIGAFVELLPGKEGMIHISQLAEYRVGKVEDEV--- 675
Query: 134 EKNPKIEKDVVVRVIVIGTK 153
KI ++VV++ + +K
Sbjct: 676 ----KIGDEIVVKIREVDSK 691
>sp|Q969S6|TM203_HUMAN Transmembrane protein 203 OS=Homo sapiens GN=TMEM203 PE=2 SV=1
Length = 136
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 9 WNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGE----GRVR 64
WNV VP D + VRL D +R A L + L V +L+ + E ++
Sbjct: 47 WNVFVPFFAADGLSTYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLA 106
Query: 65 ENTGEVLFPVVFS 77
E T E+ F ++ S
Sbjct: 107 EQTRELWFGLITS 119
>sp|Q5N1G4|PNP_SYNP6 Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pnp PE=3
SV=1
Length = 716
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ G+T I G+V G V +++ G F++ P + + S++ DYR + E+ + + +
Sbjct: 620 IIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQIADYRVARVEDELTVGD 679
Query: 135 KNPKIEKDVVVRVIVIGTK 153
+VVV+V I K
Sbjct: 680 -------EVVVKVREIDQK 691
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 57 NIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCS 116
N EGRV + + P + G+ K+ +G+V++GTV ++ G F++ P + + S
Sbjct: 251 NEEEGRVSLSL-KATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309
Query: 117 KMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLE 168
++ R ENP ++ K+ ++V V+V+ + +AER ++ +LE
Sbjct: 310 QISHKRI---ENP----KEALKVGQEVQVKVLEVNA---DAERVSLSIKALE 351
>sp|A2BXQ9|PNP_PROM5 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9515) GN=pnp PE=3 SV=1
Length = 721
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPV 130
+ G+T K+ GE+ G V +++ G F++ P + + S++ + R + E+ V
Sbjct: 620 IIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQLSEARVERVEDVV 675
>sp|Q31KE9|PNP_SYNE7 Polyribonucleotide nucleotidyltransferase OS=Synechococcus
elongatus (strain PCC 7942) GN=pnp PE=3 SV=1
Length = 716
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ G+T I G+V G V +++ G F++ P + + S++ DYR + E+ + + +
Sbjct: 620 IIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIHISQIADYRVARVEDELTVGD 679
Query: 135 KNPKIEKDVVVRVIVIGTK 153
+VVV+V I K
Sbjct: 680 -------EVVVKVREIDQK 691
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
KI G +L+GTV + +G F+ G V+ + + D + + +P + E N K++
Sbjct: 204 KIKEGMILEGTVKNITDYGAFIDLGSVDGLL----HLTDISWARVNHPSEVLEFNQKVKV 259
Query: 142 DVV-----VRVIVIGTKWLE 156
V+ + I +G K L+
Sbjct: 260 MVIKFNEETKRISLGMKQLD 279
>sp|B8HXN3|PNP_CYAP4 Polyribonucleotide nucleotidyltransferase OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=pnp PE=3 SV=1
Length = 715
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSE 134
+ G+T K+ G+V G V +++ G F++ P + + S++ DYR + E+ V + +
Sbjct: 620 IIMGMTRKLSAGDVYVGKVTRIIPIGAFVEFLPGKEGMIHISQLADYRVNKVEDEVSVGD 679
Query: 135 K 135
+
Sbjct: 680 E 680
>sp|Q9RSR1|PNP_DEIRA Polyribonucleotide nucleotidyltransferase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=pnp PE=3 SV=2
Length = 779
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 41 KATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVV--FSGITFKIFRGEVLDGTVHKVLK 98
K ++L A T+E G R+ +GE V +T + GE +GTV K+
Sbjct: 578 KQVRELEAMGAQVTIEEDGTVRIFSASGESAEAVKARIEAVTKEAKVGEEFEGTVVKIAP 637
Query: 99 HGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEK 135
G F+ P ++ L S++ + R E+ + + +K
Sbjct: 638 FGAFVNLFPGQDGMLHISQLSEQRVENVEDVLTVGDK 674
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 82 KIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEK 141
KI G VL+GTV + +G F+ G V+ + + D + + +P + E N K++
Sbjct: 201 KIKEGMVLEGTVKNITDYGAFIDLGSVDGLL----HLTDISWGRVNHPSEVLEFNQKVKV 256
Query: 142 DVV-----VRVIVIGTKWLEA 157
V+ + I +G K L++
Sbjct: 257 MVIKFDEKTKRISLGIKQLDS 277
>sp|A8G5Y9|PNP_PROM2 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9215) GN=pnp PE=3 SV=1
Length = 721
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPV 130
+ G+T K+ GE+ G V +++ G F++ P + + S++ + R + E+ V
Sbjct: 620 IIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQLSEARVERVEDVV 675
>sp|A2BSA7|PNP_PROMS Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain AS9601) GN=pnp PE=3 SV=1
Length = 721
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPV 130
+ G+T K+ GE+ G V +++ G F++ P + + S++ + R + E+ V
Sbjct: 620 IIEGLTRKVHEGEIFSGVVTRIIPIGAFVEILPGKEGMVHISQLSEARVERVEDVV 675
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,712,540
Number of Sequences: 539616
Number of extensions: 2736863
Number of successful extensions: 6763
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6717
Number of HSP's gapped (non-prelim): 59
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)