Query 030170
Match_columns 182
No_of_seqs 160 out of 1404
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckz_B C25, DNA-directed RNA p 100.0 8.4E-51 2.9E-55 324.9 24.6 176 1-180 1-213 (218)
2 3ayh_B DNA-directed RNA polyme 100.0 1.7E-50 5.7E-55 320.6 22.5 175 1-179 1-203 (203)
3 4ayb_E DNA-directed RNA polyme 100.0 1.2E-49 4.3E-54 310.0 19.9 177 1-181 1-178 (180)
4 3h0g_G DNA-directed RNA polyme 100.0 6.3E-44 2.2E-48 276.2 16.9 169 1-175 1-172 (172)
5 1go3_E DNA-directed RNA polyme 100.0 2.5E-41 8.7E-46 264.5 20.8 176 1-180 1-178 (187)
6 2c35_B Human RPB7, DNA-directe 100.0 1.2E-39 4.2E-44 252.0 23.6 170 1-176 1-172 (172)
7 1y14_B B16, RPB7, DNA-directed 100.0 2.6E-39 8.9E-44 250.0 19.0 169 1-175 1-171 (171)
8 2b8k_G B16, DNA-directed RNA p 100.0 1E-38 3.5E-43 254.5 19.2 170 1-176 1-172 (215)
9 2rf4_A DNA-directed RNA polyme 99.9 9.5E-26 3.2E-30 179.6 17.1 157 1-168 37-213 (214)
10 1luz_A Protein K3, protein K2; 99.3 1E-12 3.5E-17 90.4 4.2 65 81-157 7-75 (88)
11 2k52_A Uncharacterized protein 99.3 1.7E-11 5.7E-16 82.6 8.7 62 81-156 1-63 (80)
12 1kl9_A Eukaryotic translation 99.3 1.5E-11 5.1E-16 95.3 9.1 84 77-174 4-93 (182)
13 2khi_A 30S ribosomal protein S 99.3 2E-11 6.8E-16 87.8 8.7 87 75-174 20-107 (115)
14 2cqo_A Nucleolar protein of 40 99.2 7.1E-12 2.4E-16 90.8 5.5 83 75-169 12-96 (119)
15 2a19_A EIF-2- alpha, eukaryoti 99.2 3.9E-11 1.3E-15 92.4 9.7 75 83-171 13-90 (175)
16 2eqs_A ATP-dependent RNA helic 99.2 1.9E-11 6.4E-16 86.3 5.6 75 80-169 7-85 (103)
17 2k4k_A GSP13, general stress p 99.2 9E-11 3.1E-15 86.2 8.5 65 82-156 4-69 (130)
18 1wi5_A RRP5 protein homolog; S 99.1 3.8E-11 1.3E-15 86.7 4.3 82 82-175 18-100 (119)
19 2khj_A 30S ribosomal protein S 99.1 1.6E-10 5.5E-15 82.2 7.6 75 81-169 27-102 (109)
20 3cdi_A Polynucleotide phosphor 99.0 4.7E-11 1.6E-15 109.3 0.0 91 54-154 594-687 (723)
21 3aev_A Translation initiation 99.0 1.7E-09 5.9E-14 88.7 9.2 73 83-169 9-84 (275)
22 2nn6_I 3'-5' exoribonuclease C 99.0 1.3E-09 4.5E-14 86.1 7.7 85 80-176 76-169 (209)
23 1q8k_A Eukaryotic translation 99.0 2.2E-09 7.7E-14 89.2 9.3 74 83-170 11-87 (308)
24 4aid_A Polyribonucleotide nucl 98.9 3.7E-11 1.3E-15 109.7 -3.3 90 55-154 605-697 (726)
25 2id0_A Exoribonuclease 2; RNAs 98.9 2.2E-09 7.6E-14 97.4 7.0 136 17-157 494-636 (644)
26 2je6_I RRP4, exosome complex R 98.8 7E-09 2.4E-13 84.0 7.7 84 80-175 69-153 (251)
27 2ba0_A Archeal exosome RNA bin 98.8 1.7E-08 5.8E-13 80.7 8.2 80 81-175 53-134 (229)
28 3m7n_A Putative uncharacterize 98.8 1E-08 3.4E-13 79.1 6.1 76 80-175 53-139 (179)
29 2z0s_A Probable exosome comple 98.7 1.3E-08 4.4E-13 81.7 6.0 84 81-175 62-146 (235)
30 2wp8_J Exosome complex exonucl 98.7 4.1E-09 1.4E-13 99.4 3.4 137 17-154 817-964 (977)
31 3bzc_A TEX; helix-turn-helix, 98.7 5.9E-09 2E-13 96.1 3.8 73 83-169 652-725 (785)
32 1e3p_A Guanosine pentaphosphat 98.7 1.6E-10 5.6E-15 106.1 -6.9 69 76-154 656-731 (757)
33 3cw2_C Translation initiation 98.7 5E-09 1.7E-13 85.6 2.6 65 82-156 8-75 (266)
34 3psi_A Transcription elongatio 98.7 3.8E-08 1.3E-12 94.3 8.5 74 83-169 900-974 (1219)
35 2vnu_D Exosome complex exonucl 98.6 1.6E-08 5.4E-13 93.3 3.3 138 17-155 600-748 (760)
36 3psf_A Transcription elongatio 98.5 1.3E-08 4.3E-13 96.2 0.0 76 83-171 903-979 (1030)
37 3go5_A Multidomain protein wit 98.4 9.1E-07 3.1E-11 72.8 9.3 67 84-172 151-219 (285)
38 2ja9_A Exosome complex exonucl 98.4 6.8E-07 2.3E-11 68.6 7.9 81 81-176 3-90 (175)
39 2bh8_A 1B11; transcription, mo 98.4 1.6E-07 5.5E-12 65.8 2.8 63 58-120 28-97 (101)
40 2nn6_H Exosome complex exonucl 98.4 2.9E-07 1E-11 76.5 4.5 87 81-175 91-181 (308)
41 1hh2_P NUSA, N utilization sub 98.2 4.6E-06 1.6E-10 70.2 8.5 59 83-157 132-190 (344)
42 2bx2_L Ribonuclease E, RNAse E 97.9 2.5E-05 8.5E-10 69.0 7.6 87 68-157 28-119 (517)
43 1k0r_A NUSA; two component arr 97.9 2.7E-05 9.2E-10 65.9 7.1 62 80-157 125-194 (366)
44 3go5_A Multidomain protein wit 97.9 3.9E-05 1.3E-09 63.0 7.8 36 84-119 68-106 (285)
45 2asb_A Transcription elongatio 97.7 0.0001 3.6E-09 59.2 7.1 62 80-157 2-71 (251)
46 2nn6_G Exosome complex exonucl 97.2 0.00092 3.1E-08 54.9 7.4 79 81-175 123-207 (289)
47 2r7d_A Ribonuclease II family 94.8 0.0049 1.7E-07 53.8 0.0 117 17-157 337-454 (469)
48 2bh8_A 1B11; transcription, mo 93.0 0.23 8E-06 34.0 5.8 56 85-153 13-73 (101)
49 1h95_A CSD, Y-box binding prot 70.1 16 0.00056 23.4 6.2 58 83-151 3-65 (79)
50 3d0f_A Penicillin-binding 1 tr 67.7 11 0.00036 25.5 5.1 61 83-148 31-93 (106)
51 3i2z_B RNA chaperone, negative 64.4 23 0.0008 22.1 6.7 50 89-152 6-59 (71)
52 1wfq_A UNR protein; beta-barre 62.4 30 0.001 22.7 6.9 52 86-152 16-69 (89)
53 2jk8_A BEPA, putative cell fil 61.0 11 0.00037 30.5 4.8 57 79-149 244-300 (302)
54 1g6p_A Cold shock protein TMCS 59.2 15 0.00053 22.6 4.3 48 90-151 2-52 (66)
55 1c9o_A CSPB, cold-shock protei 53.9 35 0.0012 20.8 6.0 49 90-152 3-54 (66)
56 3a0j_A Cold shock protein; OB- 53.5 38 0.0013 21.2 5.5 49 90-152 3-54 (73)
57 3cam_A Cold-shock domain famil 52.1 39 0.0013 20.8 5.8 49 90-152 3-55 (67)
58 3ts2_A Protein LIN-28 homolog 51.8 44 0.0015 24.0 6.3 50 89-152 10-70 (148)
59 2l55_A SILB,silver efflux prot 49.4 50 0.0017 21.3 5.9 54 89-153 6-62 (82)
60 2vb2_X Copper protein, cation 45.7 60 0.0021 21.1 5.8 54 88-152 17-75 (88)
61 2k5n_A Putative cold-shock pro 43.6 59 0.002 20.5 5.9 47 89-151 3-52 (74)
62 2qcp_X Cation efflux system pr 41.9 66 0.0023 20.5 5.8 53 89-152 10-67 (80)
63 2kcm_A Cold shock domain famil 40.3 33 0.0011 21.7 3.7 14 137-150 39-52 (74)
64 2ytx_A Cold shock domain-conta 37.3 46 0.0016 22.1 4.2 51 85-150 15-67 (97)
65 2p9r_A Alpha-2-M, alpha-2-macr 37.2 83 0.0028 20.4 5.5 20 136-155 10-29 (102)
66 2yty_A Cold shock domain-conta 34.9 84 0.0029 20.4 5.1 52 85-151 15-68 (88)
67 2dgy_A MGC11102 protein; EIF-1 34.3 1.1E+02 0.0038 20.9 6.1 52 83-150 12-65 (111)
68 3aqq_A Calcium-regulated heat 32.9 1.2E+02 0.0041 21.8 6.1 52 84-151 58-113 (147)
69 3i4o_A Translation initiation 31.4 61 0.0021 20.8 3.8 52 88-153 15-68 (79)
70 1d7q_A Translation initiation 29.8 1.2E+02 0.0042 21.8 5.6 37 82-119 27-65 (143)
71 4fxk_A Complement C4 beta chai 25.9 69 0.0024 28.0 4.4 26 131-156 123-148 (656)
72 2ytv_A Cold shock domain-conta 24.9 61 0.0021 20.6 3.0 47 89-151 9-58 (79)
73 2lss_A Cold shock-like protein 28.6 18 0.0006 22.6 0.0 50 89-152 5-58 (70)
74 3h8z_A FragIle X mental retard 21.7 2.1E+02 0.0072 20.0 5.7 58 84-151 13-73 (128)
75 3ie4_A GRAM-negative binding p 21.3 1.5E+02 0.0053 20.0 4.6 26 128-153 57-82 (107)
76 2l74_A Putative uncharacterize 20.5 1.1E+02 0.0037 21.6 3.9 21 86-106 46-66 (145)
No 1
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-51 Score=324.94 Aligned_cols=176 Identities=20% Similarity=0.343 Sum_probs=160.7
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEeeeeeCceEEecCCCceEEEEEEEEEE
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGIT 80 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i~~~~~g~i~~~~g~~~~~v~fk~~~ 80 (182)
||++++++|+|+|||++|++ +++++|.++|.++| +||+++++|+||+++++.++++|+|.+|||.++++|.|+|++
T Consensus 1 MF~l~~l~d~V~I~P~~f~~---~l~~~i~~~L~~ky-egkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~ 76 (218)
T 2ckz_B 1 MFILSKIADLVRIPPDQFHR---DTISAITHQLNNKF-ANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVV 76 (218)
T ss_dssp CEEEEEEEEEEEECGGGTTS---CHHHHHHHHHHHHH-TTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEE
T ss_pred CeEEEEEEEEEEECHHHcCc---hHHHHHHHHHHHHh-cCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEE
Confidence 99999999999999999988 89999998888877 899999999999999999999999999999999999999999
Q ss_pred eeecCCCEEEEEEEEEecceEEEEe-cCcceEEEcCCcCCCceeecCCCc-EEEc--CCC-ceEcCCCeEEEEEEEEEec
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKC-GPVENIYLTCSKMPDYRYVQAENP-VFLS--EKN-PKIEKDVVVRVIVIGTKWL 155 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~l-g~~~gl~~~s~~~~d~~~~~~~~~-~~~~--~~~-~~~~~Gd~VrvrV~~v~~~ 155 (182)
|+|++||+++|+|++++++|+||++ |+++|++|++++++|++.++++++ |.|. +++ ++|++||.|||||.++++.
T Consensus 77 f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~ 156 (218)
T 2ckz_B 77 FKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFV 156 (218)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEEC
T ss_pred ecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcc
Confidence 9999999999999999999999999 899999999999999877776555 5553 333 6999999999999999997
Q ss_pred cc--------------------------------ccceEEEEeccCCCccccCCCCC
Q 030170 156 EA--------------------------------EREFQALVSLEGDFLGPVSCENP 180 (182)
Q Consensus 156 ~~--------------------------------~~~~~i~gs~~~~gLG~i~w~~~ 180 (182)
++ .+||.++|||+++|||+++||.-
T Consensus 157 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~gs~~~~GLG~~~ww~~ 213 (218)
T 2ckz_B 157 DVKPKSPKERELEERAQLENEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWWEH 213 (218)
T ss_dssp CCCC-------------------------------CSEEEEEECCSTTCEEGGGCC-
T ss_pred cCCCCCccccccccccccccccccccccccccCCCCCeEEEEEecCCCCchhhhhhc
Confidence 63 13899999999999999999964
No 2
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-50 Score=320.56 Aligned_cols=175 Identities=19% Similarity=0.309 Sum_probs=160.2
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEeeeeeCceEEecCCCceEEEEEEEEEE
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGIT 80 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i~~~~~g~i~~~~g~~~~~v~fk~~~ 80 (182)
||++++++|+|+|||++|++ ++.++|.++|.++| +||+++++|+||+++++..+++|+|.+|||.++++|.|+|++
T Consensus 1 MF~l~~l~d~V~i~P~~f~~---~~~~~i~~~L~~~~-egkv~~~~Gl~I~v~di~~i~~g~I~~GdG~~~~~V~fk~~~ 76 (203)
T 3ayh_B 1 MFLLSRFSDIISIHPSNFWK---PTKEALAEEIHKKY-ANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLII 76 (203)
T ss_dssp CEEEEEEEEEEEECGGGTTS---CHHHHHHHHHHHHH-TTEEETTTEEEEEEEEEEEECCCEECTTTCCEEEEEEEEEEE
T ss_pred CeEEEEEEEEEEECHHHcCC---hHHHHHHHHhhhhh-CCEEeCCccEEEEEEEeeEecccEEeCCCCCEEEEEEEEEEE
Confidence 99999999999999999988 79999988887776 899999999999999999999999999999999999999999
Q ss_pred eeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCC-cEEEc-------CCC-ceEcCCCeEEEEEEE
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN-PVFLS-------EKN-PKIEKDVVVRVIVIG 151 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~-~~~~~-------~~~-~~~~~Gd~VrvrV~~ 151 (182)
|+|++||+++|+|++++++|+||++||++|++|+++++++++.+++++ .|+|. +++ .+|++||.|||||.+
T Consensus 77 f~p~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 77 FRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred EccCCCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 999999999999999999999999999999999999999987776654 56663 333 689999999999999
Q ss_pred EEeccc-------------------ccceEEEEeccCCCccccCCCC
Q 030170 152 TKWLEA-------------------EREFQALVSLEGDFLGPVSCEN 179 (182)
Q Consensus 152 v~~~~~-------------------~~~~~i~gs~~~~gLG~i~w~~ 179 (182)
+++.++ .++|.|+|||++||||+++||.
T Consensus 157 v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~~~Ww~ 203 (203)
T 3ayh_B 157 EDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIPAWWK 203 (203)
T ss_dssp EEECC--------------------CCSEEEEEEBCSTTCBCGGGGC
T ss_pred EEccccCCCCccccccccccccccCCCCeEEEEEecCCCCceeeecC
Confidence 999542 3589999999999999999995
No 3
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=100.00 E-value=1.2e-49 Score=310.05 Aligned_cols=177 Identities=24% Similarity=0.311 Sum_probs=159.4
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEeeeeeCceEEecCCCceEEEEEEEEEE
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGIT 80 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i~~~~~g~i~~~~g~~~~~v~fk~~~ 80 (182)
||++++++|+|+|||++|++ ++++++.+.|.+++ +|||+++.|+|++++++.++++|+|.++||.++++++|++++
T Consensus 1 Mf~l~~l~d~V~IpP~~f~~---~~~~~i~~~L~~k~-~~kv~~~~G~~I~v~di~~~~~g~I~~gdg~~~~~v~~~~iv 76 (180)
T 4ayb_E 1 MYKLIKARSIVRIPPNEFGK---PLNEIALNELRQQY-QEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMIT 76 (180)
T ss_dssp CEEEEEEEEEEEECGGGTTS---CHHHHHHHHHHHHT-TTCBCSSSCEEEEEEEEEEEEEEEECSSCSSEEEEEEEEEEE
T ss_pred CeEEEEEEEEEEECHHHhCc---cHHHHHHHHHHHHh-cCeEcCCCcEEEEeeeEeecCceeEccCchHHHHHHhhheee
Confidence 99999999999999999988 89998877776665 899999999999999999999999999999999999999999
Q ss_pred eeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCC-ceEcCCCeEEEEEEEEEeccccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKN-PKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~-~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
|+|++||+++|+|+++++||+||++||++|++|++++++|++.+++++++++++++ ++++.||+|||||++++...++.
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----
T ss_pred eeccCCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999988887776666555 79999999999999999865444
Q ss_pred ceEEEEeccCCCccccCCCCCC
Q 030170 160 EFQALVSLEGDFLGPVSCENPL 181 (182)
Q Consensus 160 ~~~i~gs~~~~gLG~i~w~~~~ 181 (182)
..+|.+||++||||+++||++.
T Consensus 157 ~~rI~ls~k~~gLG~~~W~~~~ 178 (180)
T 4ayb_E 157 LPRIALTMRQPYLGKLEWITQA 178 (180)
T ss_dssp --CEEEECCSTTCEEHHHHTTC
T ss_pred cCcEEEEcCCCCCCCChhHhhh
Confidence 5578999999999999999863
No 4
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-44 Score=276.16 Aligned_cols=169 Identities=27% Similarity=0.431 Sum_probs=150.1
Q ss_pred CeEEEEece-eEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEE--eeeeeCceEEecCCCceEEEEEEE
Q 030170 1 MFLKVKLPW-NVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVT--TLENIGEGRVRENTGEVLFPVVFS 77 (182)
Q Consensus 1 MF~~~~l~d-~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~--~i~~~~~g~i~~~~g~~~~~v~fk 77 (182)
||++.+++| +|++||++|++ ++++++.++|.+++ +|+|+++.|+||+++ ++.++++|+|.++||.++++|.|+
T Consensus 1 Mf~l~~l~d~~i~ipp~~~~~---~~~~~i~~~l~~~~-~g~vi~~~G~~I~i~~idi~~i~~G~I~~gdg~~~~~v~f~ 76 (172)
T 3h0g_G 1 MPFFLKELSLTISLHPSYFGP---RMQDYLKAKLLADV-EGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYR 76 (172)
T ss_dssp --CEEEEEEEEEECCGGGCTT---THHHHHHHHHHHHH-TTCEETTTEEEEEECTTTSEEECCCEECTTTCCEEEEEEEE
T ss_pred CeEEEEEecCeEEeCHHHhCc---cHHHHHHHHHHHHh-CCcCcCCccEEEEEEeeeeeEeeCCEEECCCCcEEEEEEEE
Confidence 999999999 99999999988 89999988888887 899999999999999 999999999999999999999999
Q ss_pred EEEeeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccc
Q 030170 78 GITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA 157 (182)
Q Consensus 78 ~~~f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 157 (182)
+++|+|++||+++|+|+++++||+||+++|+++++|++++.+.+.|+++++.|.|.+.++.+++||+|||||.+++++.+
T Consensus 77 ~ivf~p~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~ 156 (172)
T 3h0g_G 77 AVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDAT 156 (172)
T ss_dssp EEEECCCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSS
T ss_pred EeeeccCCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCC
Confidence 99999999999999999999999999999999999999984334444443455555445799999999999999999754
Q ss_pred ccceEEEEeccCCCcccc
Q 030170 158 EREFQALVSLEGDFLGPV 175 (182)
Q Consensus 158 ~~~~~i~gs~~~~gLG~i 175 (182)
.+.++|||++||||++
T Consensus 157 --~~~~Igtm~~~~LG~~ 172 (172)
T 3h0g_G 157 --EIFAIATMKEDYLGVL 172 (172)
T ss_dssp --CEEEEEECCSTTCEEC
T ss_pred --CceEEEEcCCCCCCCC
Confidence 5789999999999985
No 5
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=2.5e-41 Score=264.49 Aligned_cols=176 Identities=21% Similarity=0.430 Sum_probs=154.3
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEeeeeeCceEEecCCCceEEEEEEEEEE
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGIT 80 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i~~~~~g~i~~~~g~~~~~v~fk~~~ 80 (182)
||++++++++++|||++++. .+.+.|.+.|.+++ +||++++.|+|++++++.+.++|+|.++||.+++.+.|++++
T Consensus 1 Mf~~~~l~~~i~I~P~~~~~---~i~~~I~~~L~~~~-~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~~~~~~i~ 76 (187)
T 1go3_E 1 MYKILEIADVVKVPPEEFGK---DLKETVKKILMEKY-EGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLV 76 (187)
T ss_dssp CEEEEEEEEEEEECGGGTTS---CHHHHHHHHHHHHH-TTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEEEEEEEEE
T ss_pred CcEEEEEEEEEEECHHHhCc---cHHHHHHHHHHHHh-CCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEEEEEEEEE
Confidence 99999999999999999988 78875544456555 899999999999999999999999999999999999999999
Q ss_pred eeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCC-CceEcCCCeEEEEEEEEEeccccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEK-NPKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~-~~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
|+|++||+++|+|+++++||+||+++|++|++|+|+++++++.++++++.+.+.+ ...+++||.|||||.+++...+..
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p 156 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERK 156 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC---
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 9999999999999999999999999999999999999999887777665444444 479999999999999999865421
Q ss_pred -ceEEEEeccCCCccccCCCCC
Q 030170 160 -EFQALVSLEGDFLGPVSCENP 180 (182)
Q Consensus 160 -~~~i~gs~~~~gLG~i~w~~~ 180 (182)
.+++.+|++++|||+++||.+
T Consensus 157 ~~~~I~lS~k~~~LG~~~w~~~ 178 (187)
T 1go3_E 157 RGSKIALTMRQPYLGKLEWIEE 178 (187)
T ss_dssp --CEEEEECCSTTCEEHHHHHH
T ss_pred CccEEEEEEcCCCCCcHHHHhh
Confidence 467899999999999999953
No 6
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=1.2e-39 Score=251.99 Aligned_cols=170 Identities=29% Similarity=0.531 Sum_probs=151.9
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEeeeeeCceEEecCCCceEEEEEEEEEE
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGIT 80 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i~~~~~g~i~~~~g~~~~~v~fk~~~ 80 (182)
||++.+++++|++||++|++ ++++++..+|..++ .|+++++.|+|++++++.++++|++.++||.+++.+.|++++
T Consensus 1 mfil~~m~~~I~~~p~~~~~---~~~~~i~~~l~~~~-~~~vi~~~G~~I~~~di~~i~~g~i~~~d~~~~~~~~~~~~~ 76 (172)
T 2c35_B 1 MFYHISLEHEILLHPRYFGP---NLLNTVKQKLFTEV-EGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIV 76 (172)
T ss_dssp CEEEEEEEEEEEECGGGCCS---CHHHHHHHHHHHHH-TTCEETTTEEEEEEEEEEEECCCBCCTTCSSEEEEEEEEEEE
T ss_pred CcEEEEEeEEEEECHHHhCC---hHHHHHHHHHHHHH-cCcCcCCceEEEEEEEeeecCCeEEeCCCCCEEEEEEEEEEE
Confidence 99999999999999999988 79998888888787 799999999999999999999999999999999999999999
Q ss_pred eeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCc-EEEcCCC-ceEcCCCeEEEEEEEEEecccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENP-VFLSEKN-PKIEKDVVVRVIVIGTKWLEAE 158 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~-~~~~~~~-~~~~~Gd~VrvrV~~v~~~~~~ 158 (182)
|+|++||+++|+|+++++||+||+++|++|++|+|++.+.+.+++.++. ++.++++ ++++.||.|||||.+++++.+
T Consensus 77 ~~~~~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~- 155 (172)
T 2c35_B 77 FRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKN- 155 (172)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETT-
T ss_pred eeCCCCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCC-
Confidence 9999999999999999999999999999999999988444444444543 4445554 699999999999999999653
Q ss_pred cceEEEEeccCCCccccC
Q 030170 159 REFQALVSLEGDFLGPVS 176 (182)
Q Consensus 159 ~~~~i~gs~~~~gLG~i~ 176 (182)
++.++|||++||||+++
T Consensus 156 -~~~~igsm~~~~LG~~~ 172 (172)
T 2c35_B 156 -DIFAIGSLMDDYLGLVS 172 (172)
T ss_dssp -EEEEEEECCSTTCEEC-
T ss_pred -CcEEEEEecCCCCCCCC
Confidence 68899999999999985
No 7
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=100.00 E-value=2.6e-39 Score=250.00 Aligned_cols=169 Identities=25% Similarity=0.447 Sum_probs=137.9
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEeee--eeCceEEecCCCceEEEEEEEE
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NIGEGRVRENTGEVLFPVVFSG 78 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i~--~~~~g~i~~~~g~~~~~v~fk~ 78 (182)
||++.+++++|++||++|++ .+++.+..+|..++ .|+++++.|+++++++|. ++++|++.++||.+++++.|++
T Consensus 1 mfil~~m~~~i~~pp~~l~~---~~p~~i~~~i~~~~-i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~ 76 (171)
T 1y14_B 1 MFFIKDLSLNITLHPSFFGP---RMKQYLKTKLLEEV-EGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRA 76 (171)
T ss_dssp CEEEEEEEEECCCCTTSCST---THHHHHHHHHHHHH-TTEEETTTEEEEEECCGGGCBCC------------CEEEEEE
T ss_pred CeEEEEEEEEEEECHHHhCC---hHHHHHHHHHHHHH-cCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEE
Confidence 99999999999999999988 79998988988887 799999999999999999 9999999999999999999999
Q ss_pred EEeeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccc
Q 030170 79 ITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAE 158 (182)
Q Consensus 79 ~~f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~ 158 (182)
++|+|++||+++|+|+++++||+||+++|.||++|+|++.+.+.+++.++.|.|..+++.++.||.|||||.+++++.
T Consensus 77 ~~~~~~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~-- 154 (171)
T 1y14_B 77 VVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQV-- 154 (171)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEET--
T ss_pred EEccCCCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCC--
Confidence 999999999999999999999999999999999999988544455555565655444478999999999999999975
Q ss_pred cceEEEEeccCCCcccc
Q 030170 159 REFQALVSLEGDFLGPV 175 (182)
Q Consensus 159 ~~~~i~gs~~~~gLG~i 175 (182)
+++.++|||++||||++
T Consensus 155 ~~~~~igsm~~~~LG~~ 171 (171)
T 1y14_B 155 SSIHAIGSIKEDYLGAI 171 (171)
T ss_dssp TEEEEEEECCSTTCEEC
T ss_pred CCcEEEEEcCCCCCCCC
Confidence 37899999999999985
No 8
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=1e-38 Score=254.46 Aligned_cols=170 Identities=26% Similarity=0.448 Sum_probs=153.4
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEeee--eeCceEEecCCCceEEEEEEEE
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLE--NIGEGRVRENTGEVLFPVVFSG 78 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i~--~~~~g~i~~~~g~~~~~v~fk~ 78 (182)
||++.+++++|++||++|++ .+++.+..+|..++ .|+++++.|+||++++|. ++++|++.++||.+++.+.|++
T Consensus 1 MfiL~~m~~~I~ipp~~~~~---~~p~~i~~~I~~~~-ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~ 76 (215)
T 2b8k_G 1 MFFIKDLSLNITLHPSFFGP---RMKQYLKTKLLEEV-EGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRA 76 (215)
T ss_dssp CEEEECCEEEEEECGGGCSS---SHHHHHHHHHHHSS-TTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCE
T ss_pred CEEeHHHHhhhhcCHHHHCh---hHhHHHHhcCCHHH-CCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhh
Confidence 99999999999999999988 79998988988887 799999999999999999 8999999999999999999999
Q ss_pred EEeeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccc
Q 030170 79 ITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAE 158 (182)
Q Consensus 79 ~~f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~ 158 (182)
++|+|++||+++|+|+++++||+||++||.||++|+|++.+.+.+++.++.|.|..+.+.+++||.|||||.+++++.
T Consensus 77 i~~~p~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~-- 154 (215)
T 2b8k_G 77 VVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQV-- 154 (215)
T ss_dssp EEECCCTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEET--
T ss_pred heeccCCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCC--
Confidence 999999999999999999999999999999999999987544455555666655444478999999999999999965
Q ss_pred cceEEEEeccCCCccccC
Q 030170 159 REFQALVSLEGDFLGPVS 176 (182)
Q Consensus 159 ~~~~i~gs~~~~gLG~i~ 176 (182)
.++..+|||+++|||+++
T Consensus 155 ~~i~~IgSmk~~~LG~~~ 172 (215)
T 2b8k_G 155 SSIHAIGSIKEDYLGAIS 172 (215)
T ss_dssp TEEEEEEECCSTTCEEC-
T ss_pred CccEEEEEcCCCCCCCcc
Confidence 367899999999999984
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.5e-26 Score=179.63 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=119.9
Q ss_pred CeEEEEeceeEEEcCCCCCCCCCChHHHHHHHHHHhHhcCeeeCCc-cEEEEEEeeeeeCc------------eEEecCC
Q 030170 1 MFLKVKLPWNVVVPAENLDAKGPMLQRSIVVRLLDDFARRKATKDL-GYFLAVTTLENIGE------------GRVRENT 67 (182)
Q Consensus 1 MF~~~~l~d~v~i~P~~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~-G~~v~i~~i~~~~~------------g~i~~~~ 67 (182)
||+++++++.|+|+|++|++ .++. ++++.++.+ .+|+.++. |+|++++++...++ |+|.+++
T Consensus 37 mF~l~~~~~~V~L~P~~f~~---~~~~-i~~~~L~~l-l~ky~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~~~ 111 (214)
T 2rf4_A 37 CIVRVPIALYVSLAPMYLEN---PLQG-VMKQHLNPL-VMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDT 111 (214)
T ss_dssp CEEEEEEEEEEECCGGGTTC---HHHH-HHHHHHHHH-BTSEETTTTEEEEEEEEEETTSCCC-----------------
T ss_pred cEEEEEEEEEEEECHHHhCC---hhHH-HHHHHHHHH-HhcccCCCCEEEEEEECeEeccCCCcCccccccceeEEeCCC
Confidence 99999999999999999988 5555 555555566 57888885 89999999865554 7999999
Q ss_pred CceEEEEEEEEEEeeecCCCEEEEEEEEEecceEEE-EecCcceEEEcCCcCCCceeec-CC-----CcEEEcCCCceEc
Q 030170 68 GEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFL-KCGPVENIYLTCSKMPDYRYVQ-AE-----NPVFLSEKNPKIE 140 (182)
Q Consensus 68 g~~~~~v~fk~~~f~p~~gEv~~g~V~~v~~~Gifv-~lg~~~gl~~~s~~~~d~~~~~-~~-----~~~~~~~~~~~~~ 140 (182)
|.+++.|+|++++|||++||+++|+|+.+++.|+.+ .+|+|+ .+++++.+|+...++ ++ ..|.|... ..
T Consensus 112 g~~~~~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn-~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~-~~-- 187 (214)
T 2rf4_A 112 PFGFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFN-ASIKKNNIPVDWTFVHNDGNRSLGHWVDSNG-EP-- 187 (214)
T ss_dssp CCCEEEEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETTTEE-EEECSTTSCSSCBCCCCSCC-CCCCCBCSSC-CB--
T ss_pred ceEEEEEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeCCEE-EEEcHHHCCCcccccccccccCCCceEcCCC-CC--
Confidence 999999999999999999999999999999988887 469996 688887777654443 33 34544422 22
Q ss_pred CCCeEEEEEEEEEecccccceEEEEecc
Q 030170 141 KDVVVRVIVIGTKWLEAEREFQALVSLE 168 (182)
Q Consensus 141 ~Gd~VrvrV~~v~~~~~~~~~~i~gs~~ 168 (182)
+|++|||||.+++... ...++.|||.
T Consensus 188 ig~~IRFrV~~~~~~~--~~lsI~Gsll 213 (214)
T 2rf4_A 188 IDGKLRFTVRNVHTTG--RVVSVDGTLI 213 (214)
T ss_dssp CCSEEEEEEEEEECCS--SSCEEEEECC
T ss_pred CCCEEEEEEEEEEecC--CEEEEEEEec
Confidence 5999999999999742 4678999985
No 10
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.32 E-value=1e-12 Score=90.42 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=54.9
Q ss_pred eeecCCCEEEEEEEEEecceEEEEec---CcceEEEcC-CcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCG---PVENIYLTC-SKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLE 156 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg---~~~gl~~~s-~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 156 (182)
+.|.+|++++|+|+ +++||+||+++ ..+|++|+| ++.++++.++ .+.+ +||+|+|||.++|...
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~----------~~~~-~Gd~V~VkV~~vd~~~ 74 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEY----------RDKL-VGKTVKVKVIRVDYTK 74 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHH----------HHHH-TTCEEEEEEEEEETTT
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCH----------hHEe-CCCEEEEEEEEEECCC
Confidence 46899999999999 99999999995 489999999 9877665322 2456 9999999999999854
Q ss_pred c
Q 030170 157 A 157 (182)
Q Consensus 157 ~ 157 (182)
+
T Consensus 75 ~ 75 (88)
T 1luz_A 75 G 75 (88)
T ss_dssp T
T ss_pred C
Confidence 4
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.28 E-value=1.7e-11 Score=82.63 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=54.7
Q ss_pred eeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLE 156 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 156 (182)
+.+.+|++++|+|++++++|+||+++ ..+|++|.|++.+++. +.+++||.|+|+|.+++...
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~--------------~~~~~Gd~V~v~V~~vd~~~ 63 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL--------------ENLNVGDEIIVQAIDVRPEK 63 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG--------------GGCCTTCEEEEEEEEEETTT
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc--------------eeeCCCCEEEEEEEEEECCC
Confidence 45789999999999999999999999 6899999999865443 57999999999999999753
No 12
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.27 E-value=1.5e-11 Score=95.26 Aligned_cols=84 Identities=14% Similarity=0.008 Sum_probs=59.3
Q ss_pred EEEEee---ecCCCEEEEEEEEEecceEEEEe---cCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEE
Q 030170 77 SGITFK---IFRGEVLDGTVHKVLKHGVFLKC---GPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVI 150 (182)
Q Consensus 77 k~~~f~---p~~gEv~~g~V~~v~~~Gifv~l---g~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 150 (182)
+|.+++ |.+|+++.|+|+++++||+||++ +.++|++|+|++.++++. +..+.+++||.|+|+|+
T Consensus 4 ~~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~----------~~~~~~~vGd~V~VkVl 73 (182)
T 1kl9_A 4 SCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIR----------SINKLIRIGRNECVVVI 73 (182)
T ss_dssp CCCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC----------------------CTTCEEEEEEE
T ss_pred eeEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccC----------CHHHhcCCCCEEEEEEE
Confidence 344454 68999999999999999999999 569999999999877653 22369999999999999
Q ss_pred EEEecccccceEEEEeccCCCccc
Q 030170 151 GTKWLEAEREFQALVSLEGDFLGP 174 (182)
Q Consensus 151 ~v~~~~~~~~~~i~gs~~~~gLG~ 174 (182)
++|...+ .+.-|++..--.|
T Consensus 74 ~vD~~~~----rI~LSlk~~~~~p 93 (182)
T 1kl9_A 74 RVDKEKG----YIDLSKRRVSPEE 93 (182)
T ss_dssp EEETTTT----EEEEESTTCCHHH
T ss_pred EEECCCC----EEEEEEeecCcCh
Confidence 9997543 3566776654444
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.26 E-value=2e-11 Score=87.81 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=67.2
Q ss_pred EEEEEEeeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEE
Q 030170 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTK 153 (182)
Q Consensus 75 ~fk~~~f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 153 (182)
.|..+..++.+|++++|+|++++++|+||+++ ..+|++|.+++.++... .+..+.+++||.|+|+|.+++
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~---------~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKN---------IHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTT---------CSSTTTCCTTCEEEEEEEEEE
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccc---------cCcccEECCCCEEEEEEEEEE
Confidence 35566678899999999999999999999998 48999999998653210 122368999999999999999
Q ss_pred ecccccceEEEEeccCCCccc
Q 030170 154 WLEAEREFQALVSLEGDFLGP 174 (182)
Q Consensus 154 ~~~~~~~~~i~gs~~~~gLG~ 174 (182)
...+ .+..|++...-.|
T Consensus 91 ~~~~----rI~lslk~~~~~p 107 (115)
T 2khi_A 91 EERR----RISLGLKQCKANP 107 (115)
T ss_dssp TTTT----EEEECCCCCCSSC
T ss_pred CCCC----EEEEEEEecCcCH
Confidence 7543 4667777644444
No 14
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=7.1e-12 Score=90.78 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=66.1
Q ss_pred EEEEEEeeecCCCEEEEEEEEEecceEEEEecC--cceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 75 VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP--VENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 75 ~fk~~~f~p~~gEv~~g~V~~v~~~Gifv~lg~--~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
.++.+.+.|.+|+++.|+|+++++||+||+++. .+|++|++++.++++. +..+.+++||.|+|||+++
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~----------~~~~~~~~Gd~V~VkV~~v 81 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVD----------KPSEIVDVGDKVWVKLIGR 81 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCS----------CHHHHCCTTCEEEEEEEEE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCccccc----------ChhhcCCCCCEEEEEEEEE
Confidence 467778899999999999999999999999965 5999999999876541 1125899999999999999
Q ss_pred EecccccceEEEEeccC
Q 030170 153 KWLEAEREFQALVSLEG 169 (182)
Q Consensus 153 ~~~~~~~~~~i~gs~~~ 169 (182)
+...... .+.-||+.
T Consensus 82 d~~~~~~--~i~LSlk~ 96 (119)
T 2cqo_A 82 EMKNDRI--KVSLSMKV 96 (119)
T ss_dssp EECSSCE--EEEEESTT
T ss_pred eccccCc--eEEEEEee
Confidence 9853111 35566655
No 15
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.24 E-value=3.9e-11 Score=92.39 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=56.2
Q ss_pred ecCCCEEEEEEEEEecceEEEEe---cCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccccc
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKC---GPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~l---g~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
|.+|+++.|+|+++++||+||++ +.++|++|+|++.+++.. +..+.+++||.|+|+|+++|...+
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~----------~~~~~~~vGd~V~vkVl~vd~~~~-- 80 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIR----------SIQKLIRVGKNDVAVVLRVDKEKG-- 80 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC------------------CCCCCCCTTSEEEEEEEEEETTTT--
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccC----------CHHHcCCCCCEEEEEEEEEECCCC--
Confidence 45999999999999999999999 569999999999876642 234689999999999999997543
Q ss_pred ceEEEEeccCCC
Q 030170 160 EFQALVSLEGDF 171 (182)
Q Consensus 160 ~~~i~gs~~~~g 171 (182)
.+.-|++...
T Consensus 81 --~I~LSlk~~~ 90 (175)
T 2a19_A 81 --YIDLSKRRVS 90 (175)
T ss_dssp --EEEEESTTCC
T ss_pred --eEEEEEEecC
Confidence 3566776543
No 16
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.9e-11 Score=86.30 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=59.3
Q ss_pred EeeecCCCEEEEEEEEEecceEEEEec----CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEec
Q 030170 80 TFKIFRGEVLDGTVHKVLKHGVFLKCG----PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWL 155 (182)
Q Consensus 80 ~f~p~~gEv~~g~V~~v~~~Gifv~lg----~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~ 155 (182)
.+.+.+|+++.|+|+++++||+||+++ ..+|++|+|++.+++.. .+..+.+++||.|+|||.+++..
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~---------~~~~~~~~~Gd~V~VkV~~vd~~ 77 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRV---------ANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCC---------CCHHHHCCTTCEEEEEEEEEETT
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCccc---------CCcccEeCCCCEEEEEEEEEECC
Confidence 456899999999999999999999998 58999999998554321 11125899999999999999851
Q ss_pred ccccceEEEEeccC
Q 030170 156 EAEREFQALVSLEG 169 (182)
Q Consensus 156 ~~~~~~~i~gs~~~ 169 (182)
.+.-|+++
T Consensus 78 ------~i~LSlk~ 85 (103)
T 2eqs_A 78 ------KTSLSMKD 85 (103)
T ss_dssp ------EEEEESTT
T ss_pred ------eeEEEEee
Confidence 35556654
No 17
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.17 E-value=9e-11 Score=86.16 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=56.1
Q ss_pred eecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecc
Q 030170 82 KIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLE 156 (182)
Q Consensus 82 ~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 156 (182)
.+.+|+++.|+|++++++|+||+++ ..+|++|++++.+++.. +....+++||.|+|+|.+++...
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~----------~~~~~~~vGd~V~vkV~~vd~~~ 69 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVK----------DINEHLSVGDEVQVKVLAVDEEK 69 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCS----------CGGGTCCTTCEEEEEEEEEETTT
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCccccc----------CccccCCCCCEEEEEEEEEeCCC
Confidence 4689999999999999999999996 68999999999877642 12368999999999999999743
No 18
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.12 E-value=3.8e-11 Score=86.73 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=63.0
Q ss_pred eecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccccc
Q 030170 82 KIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAERE 160 (182)
Q Consensus 82 ~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~ 160 (182)
.+.+|++++|+|+++++||+||+++ .-.+.+|+++...+++.+++ ..+.+++||.|+|+|.+++...+
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~Gd~V~vkV~~vd~~~~--- 86 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKN--------KGAKLKVGQYLNCIVEKVKGNGG--- 86 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHS--------SSCCCCTTCEEEEEEEECCTTSC---
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccC--------ccCEeCCCCEEEEEEEEEeCCCC---
Confidence 4689999999999999999999999 44467777766544332211 23689999999999999997533
Q ss_pred eEEEEeccCCCcccc
Q 030170 161 FQALVSLEGDFLGPV 175 (182)
Q Consensus 161 ~~i~gs~~~~gLG~i 175 (182)
.+.-|+++..+|.-
T Consensus 87 -~i~Lslk~~~l~~~ 100 (119)
T 1wi5_A 87 -VVSLSVGHSEVSTA 100 (119)
T ss_dssp -EEEEECCCCCSCCC
T ss_pred -EEEEEEchhhcccc
Confidence 57778888888864
No 19
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.12 E-value=1.6e-10 Score=82.16 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=60.7
Q ss_pred eeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
..+.+|+++.|+|++++++|+||+++ .++|++|.+++.+++.. +....|++||.|+|+|.+++...+
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~----------~~~~~~~vGd~V~v~V~~vd~~~~-- 94 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVE----------DATLVLSVGDEVEAKFTGVDRKNR-- 94 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSS----------SGGGSCCTTCEEEEEEEEEETTTT--
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCccccc----------ChhhccCCCCEEEEEEEEEECCCC--
Confidence 35679999999999999999999998 58999999998776531 223689999999999999997432
Q ss_pred ceEEEEeccC
Q 030170 160 EFQALVSLEG 169 (182)
Q Consensus 160 ~~~i~gs~~~ 169 (182)
.+..|++.
T Consensus 95 --ki~LS~k~ 102 (109)
T 2khj_A 95 --AISLSVRA 102 (109)
T ss_dssp --EEEEETTS
T ss_pred --EEEEEEee
Confidence 35566654
No 20
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.98 E-value=4.7e-11 Score=109.28 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred eeeeeCceEEecCCCceEEEE--EEEEEEeeecCCCEEEEEEEEEecceEEEEecC-cceEEEcCCcCCCceeecCCCcE
Q 030170 54 TLENIGEGRVRENTGEVLFPV--VFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP-VENIYLTCSKMPDYRYVQAENPV 130 (182)
Q Consensus 54 ~i~~~~~g~i~~~~g~~~~~v--~fk~~~f~p~~gEv~~g~V~~v~~~Gifv~lg~-~~gl~~~s~~~~d~~~~~~~~~~ 130 (182)
||.+.+...|...+......+ .++.+...+.+|++++|+|+++++||+||++++ .+|++|+|++.++++.
T Consensus 594 dI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~------- 666 (723)
T 3cdi_A 594 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE------- 666 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCcccc-------
Confidence 344434444444454443333 467778899999999999999999999999975 8999999999876542
Q ss_pred EEcCCCceEcCCCeEEEEEEEEEe
Q 030170 131 FLSEKNPKIEKDVVVRVIVIGTKW 154 (182)
Q Consensus 131 ~~~~~~~~~~~Gd~VrvrV~~v~~ 154 (182)
+.++.+++||.|+|||++++.
T Consensus 667 ---~~~~~~~vGd~V~VkVi~vd~ 687 (723)
T 3cdi_A 667 ---KVTDYLQMGQEVPVKVLEVDR 687 (723)
T ss_dssp ------------------------
T ss_pred ---CcccccCCCCEEEEEEEEECC
Confidence 233689999999999999997
No 21
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.98 E-value=1.7e-09 Score=88.67 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=60.2
Q ss_pred ecCCCEEEEEEEEEecceEEEEec---CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccccc
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKCG---PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~lg---~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
|.+|+++.|+|+++++||+||+++ .++|++|+|++.+++..+ ..+.+++||.|+|+|.++|...+
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~----------~~~~~kvGd~V~vkVi~vD~~~~-- 76 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRN----------IRDYLKEGQKVVAKVIRVDPRKG-- 76 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSC----------GGGTCCTTCEEEEEEEEEETTTT--
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccC----------HHhccCCCCEEEEEEEEEECCCC--
Confidence 668999999999999999999996 589999999998766431 23689999999999999997543
Q ss_pred ceEEEEeccC
Q 030170 160 EFQALVSLEG 169 (182)
Q Consensus 160 ~~~i~gs~~~ 169 (182)
.+.-|++.
T Consensus 77 --~I~LSlk~ 84 (275)
T 3aev_A 77 --HIDLSLRR 84 (275)
T ss_dssp --EEEEESTT
T ss_pred --EEEEEEee
Confidence 35556654
No 22
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.97 E-value=1.3e-09 Score=86.07 Aligned_cols=85 Identities=12% Similarity=-0.025 Sum_probs=67.5
Q ss_pred EeeecCCCEEEEEEEEEecceEEEEec---------CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEE
Q 030170 80 TFKIFRGEVLDGTVHKVLKHGVFLKCG---------PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVI 150 (182)
Q Consensus 80 ~f~p~~gEv~~g~V~~v~~~Gifv~lg---------~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 150 (182)
.+.|.+|+++.|+|++++++|+||+++ +++|++|+++....+.... +-.+.|++||.|++||+
T Consensus 76 ~y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~--------~~~~~l~~GD~V~akVi 147 (209)
T 2nn6_I 76 QLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKV--------EIYKSFRPGDIVLAKVI 147 (209)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCC--------CGGGTCCSSSEEEEEEE
T ss_pred cCCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHccccccccc--------chhhhcCCCCEEEEEEE
Confidence 368999999999999999999999985 5789999998876443100 11258999999999999
Q ss_pred EEEecccccceEEEEeccCCCccccC
Q 030170 151 GTKWLEAEREFQALVSLEGDFLGPVS 176 (182)
Q Consensus 151 ~v~~~~~~~~~~i~gs~~~~gLG~i~ 176 (182)
+++-.. . .+.-|+++..||.+.
T Consensus 148 si~~~~--~--~i~LS~k~~~lGVv~ 169 (209)
T 2nn6_I 148 SLGDAQ--S--NYLLTTAENELGVVV 169 (209)
T ss_dssp EEETTT--T--EEEEECCSSSCEECC
T ss_pred EEeCCC--C--eEEEEEecCCCcEEE
Confidence 997422 2 478889999999873
No 23
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.96 E-value=2.2e-09 Score=89.23 Aligned_cols=74 Identities=14% Similarity=-0.046 Sum_probs=60.1
Q ss_pred ecCCCEEEEEEEEEecceEEEEec---CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccccc
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKCG---PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~lg---~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
|.+|+++.|+|+++++||+||+++ .++|++|+|++.+++.. +..+.+++||.|+|+|++++...+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~----------~~~~~~kvGd~V~VkVl~vD~~~~-- 78 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIR----------SINKLIRIGRNECVKVIRVDKEKG-- 78 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCS----------CCTTTCSSSCEEEEEEEEEETTTT--
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCccccc----------CHHHhcCCCCEEEEEEEEEeCCCC--
Confidence 569999999999999999999995 68999999999765431 233689999999999999997533
Q ss_pred ceEEEEeccCC
Q 030170 160 EFQALVSLEGD 170 (182)
Q Consensus 160 ~~~i~gs~~~~ 170 (182)
.+.-|++..
T Consensus 79 --rI~LSlK~~ 87 (308)
T 1q8k_A 79 --YIDLSKRRV 87 (308)
T ss_dssp --EEEEECSSC
T ss_pred --EEEEEEEec
Confidence 355566553
No 24
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.92 E-value=3.7e-11 Score=109.74 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=5.6
Q ss_pred eeeeCceEEecCCCceEEE--EEEEEEEeeecCCCEEEEEEEEEecceEEEEecC-cceEEEcCCcCCCceeecCCCcEE
Q 030170 55 LENIGEGRVRENTGEVLFP--VVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGP-VENIYLTCSKMPDYRYVQAENPVF 131 (182)
Q Consensus 55 i~~~~~g~i~~~~g~~~~~--v~fk~~~f~p~~gEv~~g~V~~v~~~Gifv~lg~-~~gl~~~s~~~~d~~~~~~~~~~~ 131 (182)
|.+.+...|.+.++.+... ..++.++..|.+|++++|+|+++++||+||++.+ .+|++|+|++.++++.
T Consensus 605 i~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~-------- 676 (726)
T 4aid_A 605 INDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVA-------- 676 (726)
T ss_dssp ---------CCSCHHHHHHHHHC---------------------------------------------------------
T ss_pred EECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCccccc--------
Confidence 3344444555656544333 2478888999999999999999999999999975 8999999999877653
Q ss_pred EcCCCceEcCCCeEEEEEEEEEe
Q 030170 132 LSEKNPKIEKDVVVRVIVIGTKW 154 (182)
Q Consensus 132 ~~~~~~~~~~Gd~VrvrV~~v~~ 154 (182)
+.++.+++||.|+|||.++|.
T Consensus 677 --~~~d~~kvGD~V~VkVi~iD~ 697 (726)
T 4aid_A 677 --KPSDVLKEGQMVKVKLLGFDD 697 (726)
T ss_dssp -----------------------
T ss_pred --CccccCCCCCEEEEEEEEECC
Confidence 233689999999999999996
No 25
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.88 E-value=2.2e-09 Score=97.36 Aligned_cols=136 Identities=11% Similarity=0.007 Sum_probs=91.0
Q ss_pred CCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEee-eeeCceEEecCCCceEEEEEEEEEEeeecCCC--EEEEEE
Q 030170 17 NLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL-ENIGEGRVRENTGEVLFPVVFSGITFKIFRGE--VLDGTV 93 (182)
Q Consensus 17 ~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i-~~~~~g~i~~~~g~~~~~v~fk~~~f~p~~gE--v~~g~V 93 (182)
||-+|-.+|.+.+.|++++.+..+.-....- .++ .++++..-...+.+....--+++.++++++|+ +++|+|
T Consensus 494 hfTSPIRRY~DLivHR~l~a~l~~~~~~~~~-----~~~~~~~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~~f~g~V 568 (644)
T 2id0_A 494 TWTSPIRKYGDMINHRLLKAVIKGETATRPQ-----DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEI 568 (644)
T ss_dssp CCSCTTTBHHHHHHHHHHHHHTTC----CCC-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCCCEEEEE
T ss_pred eeCChhhcchHHHHHHHHHHHHcCCCCCccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEE
Confidence 3444455899999999999997654221100 000 11111111111111100011566778899999 999999
Q ss_pred EEEecceEEEEec--CcceEEEcCCcCC--CceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccc
Q 030170 94 HKVLKHGVFLKCG--PVENIYLTCSKMP--DYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA 157 (182)
Q Consensus 94 ~~v~~~Gifv~lg--~~~gl~~~s~~~~--d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 157 (182)
++++++|+||++. .++|++|.|++.+ +++.+++++..+..+..+.|++||+|+|||.+++...+
T Consensus 569 ~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~ 636 (644)
T 2id0_A 569 VDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 (644)
T ss_dssp EEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTT
T ss_pred EEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCC
Confidence 9999999999995 4899999999974 77777777776633333799999999999999998643
No 26
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.84 E-value=7e-09 Score=84.01 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=67.4
Q ss_pred EeeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccc
Q 030170 80 TFKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAE 158 (182)
Q Consensus 80 ~f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~ 158 (182)
.|.|.+|+++.|+|++++++|+||+++ +++|++|.++....+...+ . +-.+.+++||.|++||++++-.
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~-~------~~~~~l~vGD~V~arVi~v~~~--- 138 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVG-E------DLRRYLDVGDYVIARIENFDRS--- 138 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTT-C------CCSSSCCTTCEEEEEEEEEETT---
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccc-c------chhhcCCCCCEEEEEEEEECCC---
Confidence 478999999999999999999999999 6999999999865332100 0 1125899999999999999842
Q ss_pred cceEEEEeccCCCcccc
Q 030170 159 REFQALVSLEGDFLGPV 175 (182)
Q Consensus 159 ~~~~i~gs~~~~gLG~i 175 (182)
. .+.-|+++.+||.+
T Consensus 139 ~--~i~LS~r~~~lG~L 153 (251)
T 2je6_I 139 I--DPVLSVKGKDLGRV 153 (251)
T ss_dssp E--EEEEECCSTTCEEC
T ss_pred C--cEEEEEccccCCcc
Confidence 2 46668999999975
No 27
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.78 E-value=1.7e-08 Score=80.69 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=65.5
Q ss_pred eeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCC-CceEcCCCeEEEEEEEEEecccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEK-NPKIEKDVVVRVIVIGTKWLEAE 158 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~-~~~~~~Gd~VrvrV~~v~~~~~~ 158 (182)
|.|.+|+++.|+|++++++|+||+++ +++|++|.++...+.. ..+ ...+++||.|++||++++-.
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~----------~~~~~~~l~~GD~V~arVi~v~~~--- 119 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKP----------NKKPNEVLDIGDAIIAKVLNIDPK--- 119 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCT----------TSCGGGTCCTTCEEEEEEEEECTT---
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHcccccc----------ccchhcccCCCCEEEEEEEEECCC---
Confidence 67999999999999999999999999 6999999999863211 011 15899999999999999742
Q ss_pred cceEEEEeccCCCcccc
Q 030170 159 REFQALVSLEGDFLGPV 175 (182)
Q Consensus 159 ~~~~i~gs~~~~gLG~i 175 (182)
. .+.-|+++++||.+
T Consensus 120 ~--~i~LS~r~~~lG~L 134 (229)
T 2ba0_A 120 M--KVTLTMKDRICRPI 134 (229)
T ss_dssp C--CEEEECCSSSCEEE
T ss_pred C--cEEEEEccccCCcc
Confidence 2 35668999999976
No 28
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.76 E-value=1e-08 Score=79.10 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=62.0
Q ss_pred EeeecCCCEEEEEEEEEecceEEEEec-----------CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEE
Q 030170 80 TFKIFRGEVLDGTVHKVLKHGVFLKCG-----------PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVI 148 (182)
Q Consensus 80 ~f~p~~gEv~~g~V~~v~~~Gifv~lg-----------~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~Vrvr 148 (182)
-+.|. |+++.|+|++++++|+||+++ +++|++|.+++.+++.. +-.+.|++||.|+++
T Consensus 53 ~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~----------~~~~~~~~GD~V~ak 121 (179)
T 3m7n_A 53 PEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVK----------EISEAVGYLDILKAR 121 (179)
T ss_dssp CCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCS----------SGGGTCCTTCEEEEE
T ss_pred cccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhh----------CHhhcCCCCCEEEEE
Confidence 36688 999999999999999999996 47999999998765431 112689999999999
Q ss_pred EEEEEecccccceEEEEeccCCCcccc
Q 030170 149 VIGTKWLEAEREFQALVSLEGDFLGPV 175 (182)
Q Consensus 149 V~~v~~~~~~~~~~i~gs~~~~gLG~i 175 (182)
|++ . . +.-|+++..||.+
T Consensus 122 Vi~-----~--~--i~LS~k~~~lGvv 139 (179)
T 3m7n_A 122 VIG-----D--N--LRLSTKEEEMGVL 139 (179)
T ss_dssp EEE-----T--T--TEEECCSTTCEEE
T ss_pred EEC-----C--e--EEEEEecCCCCEE
Confidence 998 1 2 4667888888876
No 29
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.73 E-value=1.3e-08 Score=81.70 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=66.1
Q ss_pred eeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
|.|.+|+++.|+|++++++|+||+++ +++|++|.+++......-+. .+-.+.+++||.|++||++++-. .
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~------~~~~~~l~~GD~V~a~Vi~v~~~---~ 132 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAV------DDMQSLLKVGDYIKAKVVAFDKT---R 132 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTT------TCCTTSSCTTCEEEEEEEEECTT---S
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccch------hhHhhcCCCCCEEEEEEEEECCC---C
Confidence 68999999999999999999999999 69999999998652111000 01125899999999999999842 2
Q ss_pred ceEEEEeccCCCcccc
Q 030170 160 EFQALVSLEGDFLGPV 175 (182)
Q Consensus 160 ~~~i~gs~~~~gLG~i 175 (182)
.+.-|+++++||.+
T Consensus 133 --~i~LS~k~~~lG~l 146 (235)
T 2z0s_A 133 --SPLLTVQGEGLGRI 146 (235)
T ss_dssp --CEEEECCSSSCEEC
T ss_pred --cEEEEEecccCccc
Confidence 35668999999965
No 30
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.73 E-value=4.1e-09 Score=99.38 Aligned_cols=137 Identities=12% Similarity=-0.022 Sum_probs=91.6
Q ss_pred CCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEE-EEEee-eeeCceEEecCCCceEEEEEEEEEEeeecCCCEEEEEEE
Q 030170 17 NLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFL-AVTTL-ENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVH 94 (182)
Q Consensus 17 ~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v-~i~~i-~~~~~g~i~~~~g~~~~~v~fk~~~f~p~~gEv~~g~V~ 94 (182)
||-+|-.+|.+.+.|++++..+.+.-.+..-+-. .+..+ .+++...-.....+....--+++.+|++. |++++|+|+
T Consensus 817 HfTSPIRRY~DLivHR~L~a~L~~~~~~~~~~~~~~l~~i~~~~s~~er~A~~aeR~~~~~~~~~~l~~~-ge~~~g~V~ 895 (977)
T 2wp8_J 817 HFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNN-ESTETGYVI 895 (977)
T ss_dssp CCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEEE
T ss_pred ccCchHhhHHHHHHHHHHHHHhcCCCCcccccCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhccc-ceEEEEEEE
Confidence 3444555899999999999986442211100000 00000 11111111111111000011566677888 999999999
Q ss_pred EEecceEEEEecC--cceEEEcCCcC--CCceeecCCCcEEEcCC-----CceEcCCCeEEEEEEEEEe
Q 030170 95 KVLKHGVFLKCGP--VENIYLTCSKM--PDYRYVQAENPVFLSEK-----NPKIEKDVVVRVIVIGTKW 154 (182)
Q Consensus 95 ~v~~~Gifv~lg~--~~gl~~~s~~~--~d~~~~~~~~~~~~~~~-----~~~~~~Gd~VrvrV~~v~~ 154 (182)
+++++|+||.+.. ++|++|.+++. ++++.+++.++.+.+.+ .+.|++||+|+|+|.+++.
T Consensus 896 ~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~ 964 (977)
T 2wp8_J 896 KVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMD 964 (977)
T ss_dssp EECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCC
T ss_pred EEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcC
Confidence 9999999999984 89999999997 67888888899998876 2799999999999999986
No 31
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.71 E-value=5.9e-09 Score=96.13 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=59.8
Q ss_pred ecCCCEEEEEEEEEecceEEEEecC-cceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccccce
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKCGP-VENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~lg~-~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~ 161 (182)
..+|++++|+|++|++||+||+++. .+|++|+|++.+++.++ ..+.|++||.|+|||++++....
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d----------~~~~~~vGd~V~VkVi~VD~~~~---- 717 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKD----------PYEVVKAGDIVKVKVMEVDIPRN---- 717 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSC----------HHHHCCTTCCCCCBEEEEETTTT----
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCC----------hhheeCCCCEEEEEEEEEECCCC----
Confidence 5799999999999999999999995 79999999998754432 12689999999999999998543
Q ss_pred EEEEeccC
Q 030170 162 QALVSLEG 169 (182)
Q Consensus 162 ~i~gs~~~ 169 (182)
.+--||+.
T Consensus 718 rI~LSlk~ 725 (785)
T 3bzc_A 718 RVGLSMRM 725 (785)
T ss_dssp EEEECCSS
T ss_pred EEEEEEec
Confidence 35556654
No 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.69 E-value=1.6e-10 Score=106.11 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=35.1
Q ss_pred EEEEE--eeecCCCEEEEEEEEEecceEEEEecC-cceEEEcCCc----CCCceeecCCCcEEEcCCCceEcCCCeEEEE
Q 030170 76 FSGIT--FKIFRGEVLDGTVHKVLKHGVFLKCGP-VENIYLTCSK----MPDYRYVQAENPVFLSEKNPKIEKDVVVRVI 148 (182)
Q Consensus 76 fk~~~--f~p~~gEv~~g~V~~v~~~Gifv~lg~-~~gl~~~s~~----~~d~~~~~~~~~~~~~~~~~~~~~Gd~Vrvr 148 (182)
++.+. ..+.+|++++|+|+++++||+||++.+ .+||+|+|++ .++++. +.++.+++||+|+||
T Consensus 656 i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~----------~~~~~~~vGd~V~Vk 725 (757)
T 1e3p_A 656 INGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVE----------NVEDVLGVGQKVQVE 725 (757)
T ss_dssp -----------------CBEEECC-CSCEECCC---CCCCC-----------------------------CCSSCBCCCC
T ss_pred HHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCccc----------CcccccCCCCEEEEE
Confidence 56666 789999999999999999999999975 8999999999 666542 233689999999999
Q ss_pred EEEEEe
Q 030170 149 VIGTKW 154 (182)
Q Consensus 149 V~~v~~ 154 (182)
|.++|.
T Consensus 726 Vi~vd~ 731 (757)
T 1e3p_A 726 IAEIDS 731 (757)
T ss_dssp CCCCCS
T ss_pred EEEECC
Confidence 999997
No 33
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.69 E-value=5e-09 Score=85.57 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=55.0
Q ss_pred eecCCCEEEEEEEEEecceEEEEec---CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecc
Q 030170 82 KIFRGEVLDGTVHKVLKHGVFLKCG---PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLE 156 (182)
Q Consensus 82 ~p~~gEv~~g~V~~v~~~Gifv~lg---~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~ 156 (182)
.|.+|+++.|+|+++++||+||+++ ..+|++|+|++.++++. +..+.+++||.|+|+|++++...
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~----------~~~~~~~vGd~V~VkVi~vd~~~ 75 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVK----------NIRDVLKENRKVIVKVIRVDRRK 75 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCC----------CHHHHSCTTCEEEEEECCCCSSS
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCccccc----------CHHHhCcCCCEEEEEEEEEeCCC
Confidence 4789999999999999999999995 58999999999766542 11258999999999999998643
No 34
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.8e-08 Score=94.28 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=60.3
Q ss_pred ecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccccce
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~ 161 (182)
..+|++++|+|++|++||+||+++ .++|++|+|++.++++.. +..+.+++||.|+|||+++|....
T Consensus 900 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~---------~p~~v~kvGd~V~vkVl~VD~~~~---- 966 (1219)
T 3psi_A 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRR---------PANEIYEIGKTYPAKVIYIDYANI---- 966 (1219)
T ss_dssp SCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCS---------CSTTTSCTTCEEEEEEEEEEGGGT----
T ss_pred CCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccC---------CHHHcCCCCCEEEEEEEEEECCCC----
Confidence 469999999999999999999998 589999999998876321 123689999999999999998533
Q ss_pred EEEEeccC
Q 030170 162 QALVSLEG 169 (182)
Q Consensus 162 ~i~gs~~~ 169 (182)
.+--||++
T Consensus 967 rI~LSlk~ 974 (1219)
T 3psi_A 967 TAEVSLLD 974 (1219)
T ss_dssp EEEEECCH
T ss_pred EEEEEecH
Confidence 35555543
No 35
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.60 E-value=1.6e-08 Score=93.32 Aligned_cols=138 Identities=12% Similarity=-0.025 Sum_probs=86.7
Q ss_pred CCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEE-EEEee-eeeCceEEecCCCceEEEEEEEEEEeeecCCCEEEEEEE
Q 030170 17 NLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFL-AVTTL-ENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVH 94 (182)
Q Consensus 17 ~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v-~i~~i-~~~~~g~i~~~~g~~~~~v~fk~~~f~p~~gEv~~g~V~ 94 (182)
||-+|-.+|.+.+.|++++.++.+.-.+..-+-- .+..+ .+++...-..........--+++.+++... ++++|+|+
T Consensus 600 HfTSPIRRY~DLivHR~L~~~l~~~~~~~~~~~~~~l~~~~~~~s~~er~A~~aer~~~~~~~~~~l~~~~-~~~~g~V~ 678 (760)
T 2vnu_D 600 HFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNE-STETGYVI 678 (760)
T ss_dssp CCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEE
T ss_pred ccCchHhhhHHHHHHHHHHHHHccCCCcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc-eEEEEEEE
Confidence 4444556899999999999986442111100000 00000 111111111101000000015566677777 99999999
Q ss_pred EEecceEEEEecC--cceEEEcCCcC--CCceeecCCCcEEEcCC-----CceEcCCCeEEEEEEEEEec
Q 030170 95 KVLKHGVFLKCGP--VENIYLTCSKM--PDYRYVQAENPVFLSEK-----NPKIEKDVVVRVIVIGTKWL 155 (182)
Q Consensus 95 ~v~~~Gifv~lg~--~~gl~~~s~~~--~d~~~~~~~~~~~~~~~-----~~~~~~Gd~VrvrV~~v~~~ 155 (182)
+++++|+||.+.. ++|++|.+++. ++++.+++.++.+.+.+ .+.|++||+|+|+|.+++..
T Consensus 679 ~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~ 748 (760)
T 2vnu_D 679 KVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDP 748 (760)
T ss_dssp EEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-----
T ss_pred EEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECc
Confidence 9999999999973 89999999997 67888888888888765 37999999999999999975
No 36
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.3e-08 Score=96.21 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred ecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccccce
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~ 161 (182)
..+|+++.|+|++|++||+||+++ .++|++|+|++.++++.. +..+.+++||.|+|||++++....
T Consensus 903 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~---------~~~~v~kvGd~V~vkVl~VD~~~~---- 969 (1030)
T 3psf_A 903 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRR---------PANEIYEIGKTYPAKVIYIDYANI---- 969 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccC---------CHHHcCCCCCEEEEEEEEEECCCC----
Confidence 468999999999999999999998 589999999998876321 123689999999999999997543
Q ss_pred EEEEeccCCC
Q 030170 162 QALVSLEGDF 171 (182)
Q Consensus 162 ~i~gs~~~~g 171 (182)
.+--||+.+.
T Consensus 970 rI~LSlk~~d 979 (1030)
T 3psf_A 970 TAEVSLLDHD 979 (1030)
T ss_dssp ----------
T ss_pred EEEEEechHH
Confidence 3444444433
No 37
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.43 E-value=9.1e-07 Score=72.80 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=56.6
Q ss_pred cCCCEEEEEEEEEecceEEE-Eec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEecccccce
Q 030170 84 FRGEVLDGTVHKVLKHGVFL-KCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAEREF 161 (182)
Q Consensus 84 ~~gEv~~g~V~~v~~~Gifv-~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~ 161 (182)
.+|++++|+|.+++++|+|| .++ .++|++|.|++. ..+++||+|+++|.+++.+++
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~------------------~~l~~Gd~v~~~V~~id~~d~---- 208 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY------------------AEPRLGQVLDARVIGFREVDR---- 208 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS------------------SCCCTTCEEEEEEEEEETTTT----
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc------------------ccCCCCCEEEEEEEEEECCCC----
Confidence 58999999999999999999 996 499999999874 257899999999999997443
Q ss_pred EEEEeccCCCc
Q 030170 162 QALVSLEGDFL 172 (182)
Q Consensus 162 ~i~gs~~~~gL 172 (182)
.+-.|++..+-
T Consensus 209 kI~LSlk~~~~ 219 (285)
T 3go5_A 209 TLNLSLKPRSF 219 (285)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEeChhhh
Confidence 46777776554
No 38
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.43 E-value=6.8e-07 Score=68.56 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=63.6
Q ss_pred eeecCCCEEEEEEEEEecceEEEEecC--cceEEEcCCcCCCceeecCCCcEEEcCCC-ceEcCCCeEEEEEEEEEeccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCGP--VENIYLTCSKMPDYRYVQAENPVFLSEKN-PKIEKDVVVRVIVIGTKWLEA 157 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg~--~~gl~~~s~~~~d~~~~~~~~~~~~~~~~-~~~~~Gd~VrvrV~~v~~~~~ 157 (182)
|.|.+|+++.|+|++++.++++|++++ .++++|.++.... + ++. ..+++||.|+.||.+++..
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~-------~-----k~~r~~l~~GDlV~ArV~~~~~~-- 68 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNA-------S-----KKNRPTLQVGDLVYARVCTAEKE-- 68 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTC-------C-----SSSCCCCCTTCEEEEEEEECCTT--
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCch-------h-----hhhhccCCCCCEEEEEEEEecCC--
Confidence 689999999999999999999999997 7999999865311 0 122 5899999999999999853
Q ss_pred ccceEEEE----eccCCCccccC
Q 030170 158 EREFQALV----SLEGDFLGPVS 176 (182)
Q Consensus 158 ~~~~~i~g----s~~~~gLG~i~ 176 (182)
..+.+.+ ++++++||.+.
T Consensus 69 -~~~~Ltc~~~~~~r~~~lG~L~ 90 (175)
T 2ja9_A 69 -LEAEIECFDSTTGRDAGFGILE 90 (175)
T ss_dssp -SCCEEESSCTTTCSCTTCEEEC
T ss_pred -CceEEEecccccccccCCcCcC
Confidence 2323321 38899999873
No 39
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.37 E-value=1.6e-07 Score=65.80 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=53.5
Q ss_pred eCceEEecCCCceEEEEEEEEEE------eeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCC
Q 030170 58 IGEGRVRENTGEVLFPVVFSGIT------FKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPD 120 (182)
Q Consensus 58 ~~~g~i~~~~g~~~~~v~fk~~~------f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d 120 (182)
.+-|.|.+.+|....-|.+.++. -+|.+|++++++|++++++|+||++. .++|++|+|++.++
T Consensus 28 kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 28 KGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp GTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccC
Confidence 45678888777777778888887 37899999999999999999999995 68999999998654
No 40
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.35 E-value=2.9e-07 Score=76.46 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=63.2
Q ss_pred eeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCC-ceeecCCCcEEEcCCC--ceEcCCCeEEEEEEEEEecc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPD-YRYVQAENPVFLSEKN--PKIEKDVVVRVIVIGTKWLE 156 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d-~~~~~~~~~~~~~~~~--~~~~~Gd~VrvrV~~v~~~~ 156 (182)
|.|.+|+++.|+|++++++|+||+++ +.++++|.+++..+ ...- .+. ...... ..|++||.|++||++++- +
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR-~~~--~~D~~~m~~~l~vGDlV~ArVisv~~-~ 166 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR-RRS--AEDELAMRGFLQEGDLISAEVQAVFS-D 166 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC----------------CHHHHHHSCSSCEECCEEEEEET-T
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceee-ccc--chhhhhhhccCCCCCEEEEEEEEcCC-C
Confidence 67999999999999999999999999 68899999887532 1110 000 000011 489999999999999993 1
Q ss_pred cccceEEEEeccCCCcccc
Q 030170 157 AEREFQALVSLEGDFLGPV 175 (182)
Q Consensus 157 ~~~~~~i~gs~~~~gLG~i 175 (182)
. .+.-|+++++||.+
T Consensus 167 --~--~i~LStr~~~LGkL 181 (308)
T 2nn6_H 167 --G--AVSLHTRSLKYGKL 181 (308)
T ss_dssp --T--EEEEECCSSTTCEE
T ss_pred --C--CEEEEecCcCCccc
Confidence 2 35668899999965
No 41
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.20 E-value=4.6e-06 Score=70.20 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=52.0
Q ss_pred ecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccc
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA 157 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 157 (182)
...|+++.|+|.+++++|+||++|..+|++|.+++.|. ..|++||+|+|.|.+++...+
T Consensus 132 ~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~ip~----------------E~~~vGD~Vkv~V~~V~~~~k 190 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPG----------------EEIKAGDLVKVYIIDVVKTTK 190 (344)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGSCTT----------------CCCCTTCEEEEEEEEEEEETT
T ss_pred hcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHcCCC----------------cCCCCCCEEEEEEEEEEcCCC
Confidence 35799999999999999999999999999999988632 478999999999999997543
No 42
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.89 E-value=2.5e-05 Score=68.97 Aligned_cols=87 Identities=10% Similarity=0.128 Sum_probs=59.9
Q ss_pred CceEEEEEEEEEEeeecCCCEEEEEEEEEecc--eEEEEecC-cceEEEcCCcCCCceeecCCCcEEEcCCC--ceEcCC
Q 030170 68 GEVLFPVVFSGITFKIFRGEVLDGTVHKVLKH--GVFLKCGP-VENIYLTCSKMPDYRYVQAENPVFLSEKN--PKIEKD 142 (182)
Q Consensus 68 g~~~~~v~fk~~~f~p~~gEv~~g~V~~v~~~--Gifv~lg~-~~gl~~~s~~~~d~~~~~~~~~~~~~~~~--~~~~~G 142 (182)
+....+..++--.-++.+|.+|.|+|+++.++ |+||++|+ -+|++|.+++.++++...... -+... +.++.|
T Consensus 28 ~~~L~el~iE~~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~---~~~~~i~d~lk~G 104 (517)
T 2bx2_L 28 GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSA---HGRPNIKDVLREG 104 (517)
T ss_dssp TTEEEEEEEECSSSCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC----------CCCGGGTCCTT
T ss_pred CCEEEEEEEecCCCcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhcccccc---ccccchhhhccCC
Confidence 33333333333333467999999999999999 99999995 789999999976653211000 01112 479999
Q ss_pred CeEEEEEEEEEeccc
Q 030170 143 VVVRVIVIGTKWLEA 157 (182)
Q Consensus 143 d~VrvrV~~v~~~~~ 157 (182)
|.|.|+|.......+
T Consensus 105 q~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 105 QEVIVQIDKEERGNK 119 (517)
T ss_dssp CEEEEEEEECCCTTC
T ss_pred CEEEEEEEeeccccC
Confidence 999999999876543
No 43
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.87 E-value=2.7e-05 Score=65.87 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=53.7
Q ss_pred EeeecCCCEEEEEEEE----EecceEEEEecC----cceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 80 TFKIFRGEVLDGTVHK----VLKHGVFLKCGP----VENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 80 ~f~p~~gEv~~g~V~~----v~~~Gifv~lg~----~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
.|+..+||++.|+|.+ +++.++||++|. .|++++.++++|. ..|+.||.|++-|.+
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~----------------E~~~~GDrVkvyV~~ 188 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG----------------ESYEHGNRLRCYVVG 188 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTT----------------CCCCTTCEEEEEEEE
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCC----------------ccCCCCCEEEEEEEE
Confidence 3567899999999999 999999999997 9999999998752 478999999999999
Q ss_pred EEeccc
Q 030170 152 TKWLEA 157 (182)
Q Consensus 152 v~~~~~ 157 (182)
++...+
T Consensus 189 V~~~~k 194 (366)
T 1k0r_A 189 VTRGAR 194 (366)
T ss_dssp EECCSS
T ss_pred EecCCC
Confidence 997543
No 44
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.86 E-value=3.9e-05 Score=63.01 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=32.6
Q ss_pred cCCCEEEEEEEEEe-cceEEEEecC--cceEEEcCCcCC
Q 030170 84 FRGEVLDGTVHKVL-KHGVFLKCGP--VENIYLTCSKMP 119 (182)
Q Consensus 84 ~~gEv~~g~V~~v~-~~Gifv~lg~--~~gl~~~s~~~~ 119 (182)
.+|++..|+|++++ ++|+||++|. .++++|.|++.+
T Consensus 68 ~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~ 106 (285)
T 3go5_A 68 TQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPE 106 (285)
T ss_dssp CSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCS
T ss_pred cCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCc
Confidence 58999999999999 7999999994 899999998754
No 45
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.66 E-value=0.0001 Score=59.22 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=53.3
Q ss_pred EeeecCCCEEEEEEEE----EecceEEEEecC----cceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 80 TFKIFRGEVLDGTVHK----VLKHGVFLKCGP----VENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 80 ~f~p~~gEv~~g~V~~----v~~~Gifv~lg~----~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
.|+..+||++.|+|.+ +++..++|++|. .|+++..++++|. ..|+.||.|++-|.+
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~----------------E~~~~GDrIkayV~~ 65 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG----------------ESYEHGNRLRCYVVG 65 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT----------------CCCCTTCEEEEEEEE
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCC----------------ccCCCCCEEEEEEEE
Confidence 3788999999999999 899999999996 8999999988652 578999999999999
Q ss_pred EEeccc
Q 030170 152 TKWLEA 157 (182)
Q Consensus 152 v~~~~~ 157 (182)
++...+
T Consensus 66 V~~~~~ 71 (251)
T 2asb_A 66 VTRGAR 71 (251)
T ss_dssp EECCSS
T ss_pred EEcCCC
Confidence 997543
No 46
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.19 E-value=0.00092 Score=54.91 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=60.2
Q ss_pred eeecCCCEEEEEEEEEecceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccccc
Q 030170 81 FKIFRGEVLDGTVHKVLKHGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEAER 159 (182)
Q Consensus 81 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 159 (182)
|.|.+|+++.|+|++++...+.|+++ +..++++.+++... . .+....|++||.|+.||.+++-. .
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Ga-t----------k~~r~~f~~GDlV~ArV~s~~~~---~ 188 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGA-T----------KRNRPNVQVGDLIYGQFVVANKD---M 188 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCC-S----------SCSSSSSCTTCEEEEEEEECCTT---S
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcc-h----------hhhhhhcCCCCEEEEEEEEcCCC---C
Confidence 67999999999999999999999998 57788888764311 0 01125899999999999987642 2
Q ss_pred ceEEEEec-----cCCCcccc
Q 030170 160 EFQALVSL-----EGDFLGPV 175 (182)
Q Consensus 160 ~~~i~gs~-----~~~gLG~i 175 (182)
.+.+ || ++.+||++
T Consensus 189 ~~eL--sc~~~~~k~~~lG~L 207 (289)
T 2nn6_G 189 EPEM--VCIDSCGRANGMGVI 207 (289)
T ss_dssp CCEE--ECSBTTTTBCCCCSC
T ss_pred ceEE--EecccccccccCCEe
Confidence 2222 55 88999987
No 47
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=94.83 E-value=0.0049 Score=53.83 Aligned_cols=117 Identities=10% Similarity=-0.041 Sum_probs=67.9
Q ss_pred CCCCCCCChHHHHHHHHHHhHhcCeeeCCccEEEEEEee-eeeCceEEecCCCceEEEEEEEEEEeeecCCCEEEEEEEE
Q 030170 17 NLDAKGPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTL-ENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHK 95 (182)
Q Consensus 17 ~l~~~~~~~~~~i~~~l~~~~~~~k~~~~~G~~v~i~~i-~~~~~g~i~~~~g~~~~~v~fk~~~f~p~~gEv~~g~V~~ 95 (182)
||-+|-.+|.+.+.|+++..+..|+..-...- +..+ .+.+...-...+.+....--+++.+++..+|++++|.|++
T Consensus 337 hfTSPIRRY~DLivHr~L~a~l~~~~~~~~~~---l~~~~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~ 413 (469)
T 2r7d_A 337 QATSPMRRYLDLVVHQQLRAFLAGRDPLSSKV---MAAHIAESQMNADATRQAERLSRRHHTLRFIAAQPERVWDAVVVD 413 (469)
T ss_dssp CCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEE
T ss_pred eECCcccccHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEE
Confidence 34444558999999999999976541000000 0000 0111111111010100001156667788999999999865
Q ss_pred EecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEEeccc
Q 030170 96 VLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTKWLEA 157 (182)
Q Consensus 96 v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~ 157 (182)
+. ..+++++++++..+ . +.+..|++||.|+|||.++|...+
T Consensus 414 l~---------~~~glV~v~~l~~d-~-----------~~~~~~~lGd~V~V~v~~vd~~~~ 454 (469)
T 2r7d_A 414 RR---------GAQATLLIPDLAFD-V-----------QVNTPAAPGTALQVQFADIDLPQM 454 (469)
T ss_dssp EE---------TTEEEEEEGGGTEE-E-----------EEECCCCTTCEEEEEEEEEETTTT
T ss_pred Ee---------CcEEEEEECCCCeE-E-----------ecCCcCCCCCEEEEEEEEEccCCC
Confidence 43 44678888887544 1 112589999999999999999765
No 48
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=93.03 E-value=0.23 Score=33.98 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=40.8
Q ss_pred CCCEEEEEEEEE---ecceEEEEe--cCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEE
Q 030170 85 RGEVLDGTVHKV---LKHGVFLKC--GPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTK 153 (182)
Q Consensus 85 ~gEv~~g~V~~v---~~~Gifv~l--g~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 153 (182)
.++...|+|+.. ..|| |+.. |..+.++|.+++..+.+ ..+.++.|+.|+++|..+.
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~------------~~~~l~~Ge~V~g~V~~i~ 73 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA------------VRGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC------------CCCCCCTTCEEEEEEEECC
T ss_pred ccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc------------cccCCCCCCEEEEEEEEeC
Confidence 567789999988 5589 7764 35789999999875432 0146788999999998876
No 49
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=70.07 E-value=16 Score=23.40 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=37.9
Q ss_pred ecCCCEEEEEEEEEec---ceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCC-ceEcCCCeEEEEEEE
Q 030170 83 IFRGEVLDGTVHKVLK---HGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKN-PKIEKDVVVRVIVIG 151 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~---~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~-~~~~~Gd~VrvrV~~ 151 (182)
+...+...|+|+.-++ ||+-..-+ .-|-++|.|++..+.. +.. +.++.||.|++.+..
T Consensus 3 ~~~~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~-----------~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 3 KVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP-----------RKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp SCCEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCC-----------SCCSCSCCSSCEEEEEEEE
T ss_pred cccccccceEEEEEECCCCcEEEecCCCCccEEEEhHHcccccc-----------ccccccCCCCCEEEEEEEE
Confidence 3445567899999876 56554433 3566888887753210 011 578899999999864
No 50
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=67.74 E-value=11 Score=25.48 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=39.4
Q ss_pred ecCCCEEEEEEEEEecceEEEEecC-cceEEEcCCcCCCceeecCCCcEEEcC-CCceEcCCCeEEEE
Q 030170 83 IFRGEVLDGTVHKVLKHGVFLKCGP-VENIYLTCSKMPDYRYVQAENPVFLSE-KNPKIEKDVVVRVI 148 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gifv~lg~-~~gl~~~s~~~~d~~~~~~~~~~~~~~-~~~~~~~Gd~Vrvr 148 (182)
|..|+.+-|.|+++++.++-+.+.. -.+-+....+-+...+.... .. .+..++.||.|+|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~-----~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSND-----PKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTC-----TTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhccccc-----ccchhccCCCCCEEEEE
Confidence 5568999999999999999998853 33333333433332111100 01 23579999999998
No 51
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=64.36 E-value=23 Score=22.10 Aligned_cols=50 Identities=8% Similarity=0.011 Sum_probs=31.6
Q ss_pred EEEEEEEEec---ceEEEEecC-cceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 89 LDGTVHKVLK---HGVFLKCGP-VENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 89 ~~g~V~~v~~---~Gifv~lg~-~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
..|+|+.-++ ||+-..-+. -|-++|.+++..+.+ +.++.||.|.+.+..-
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~--------------~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGF--------------KTLAEGQRVEFEITNG 59 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSC--------------CCCCTTCEEEEEEEEE
T ss_pred ccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccC--------------cCCCCCCEEEEEEEEC
Confidence 5688888765 464333322 455677777643211 4678899999998753
No 52
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=62.37 E-value=30 Score=22.72 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=33.3
Q ss_pred CCEEEEEEEEEec-ceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 86 GEVLDGTVHKVLK-HGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 86 gEv~~g~V~~v~~-~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
.....|+|+..++ ||+-..-+ .-|-++|.+.+..+ .+.++.||.|++.+..-
T Consensus 16 ~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~---------------~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 16 ALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN---------------LQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp CCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC---------------TTTCCTTCCEEEEEEEC
T ss_pred ccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc---------------cCCCCCCCEEEEEEEEC
Confidence 3567899988864 34433222 24667777776432 14677899999988653
No 53
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=61.02 E-value=11 Score=30.54 Aligned_cols=57 Identities=14% Similarity=0.002 Sum_probs=41.3
Q ss_pred EEeeecCCCEEEEEEEEEecceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEE
Q 030170 79 ITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIV 149 (182)
Q Consensus 79 ~~f~p~~gEv~~g~V~~v~~~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV 149 (182)
.+.-|..|..+.|...+.+..++-++....--+.+-..+.|+.. +.++.||++.|++
T Consensus 244 ~i~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~pe~~--------------~~l~~~~~~~~~~ 300 (302)
T 2jk8_A 244 PVMVAKEGETYTGTYRGAGLEGFALNVKGAYIIGNIDHLPPEQL--------------KILKPGDKITFTA 300 (302)
T ss_dssp CEEECCTTCEEEEEEEEECSSEEEEEBTTBEEEEEGGGSCHHHH--------------HTCCTTCEEEEEC
T ss_pred EEEeccCCCccceEEEecCCCeEEEEeCCcEEEEECCccCHHHH--------------hccCCCCEEEEEe
Confidence 55679999999999999999999888754312333333334333 5789999999875
No 54
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=59.20 E-value=15 Score=22.59 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=26.7
Q ss_pred EEEEEEEec---ceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 90 DGTVHKVLK---HGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 90 ~g~V~~v~~---~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
.|+|+.-++ ||+-..-+.-|-++|.+++..+-+ +.++.|+.|++.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~--------------~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGF--------------KTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSC--------------CCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCC--------------CCCCCCCEEEEEEEE
Confidence 477777664 344322223334555555432111 578889999998853
No 55
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=53.95 E-value=35 Score=20.85 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=29.9
Q ss_pred EEEEEEEec---ceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 90 DGTVHKVLK---HGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 90 ~g~V~~v~~---~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
.|+|+.-++ ||+-..-+.-|-++|.+++..+.. +.++.|+.|++.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~--------------~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGF--------------KTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSC--------------CCCCTTCEEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCccEEEEHHHccccCC--------------CCCCCCCEEEEEEEEC
Confidence 578888765 354332223445667766533211 4688899999998643
No 56
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=53.55 E-value=38 Score=21.20 Aligned_cols=49 Identities=12% Similarity=0.008 Sum_probs=28.4
Q ss_pred EEEEEEEec---ceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 90 DGTVHKVLK---HGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 90 ~g~V~~v~~---~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
.|+|+.-+. ||+-..-+.-|-++|.|++..+.+ +.++.|+.|.+.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~--------------~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGF--------------RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSC--------------SSCCTTCEEEEEEECC
T ss_pred CEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCC--------------CCCCCCCEEEEEEEEC
Confidence 578887765 344322223344666666532211 4678899999888543
No 57
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=52.15 E-value=39 Score=20.80 Aligned_cols=49 Identities=10% Similarity=-0.078 Sum_probs=30.7
Q ss_pred EEEEEEEec---ceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 90 DGTVHKVLK---HGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 90 ~g~V~~v~~---~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
.|+|+.-++ ||+-..-+ .-|-++|.|.+..+-+ +.++.|+.|++.+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~--------------~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGF--------------KTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGG--------------SSCCTTCEEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCC--------------CCCCCCCEEEEEEEEC
Confidence 577887765 45543333 3455677776632211 5788899999998653
No 58
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=51.82 E-value=44 Score=24.01 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=32.5
Q ss_pred EEEEEEEEec---ceEEEEe--------cCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 89 LDGTVHKVLK---HGVFLKC--------GPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 89 ~~g~V~~v~~---~Gifv~l--------g~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
..|+|+--+. ||+...- +.-|-++|.+.+..+.+ +.++.|+.|.|.+..-
T Consensus 10 ~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~--------------~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 10 GAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGF--------------RSLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSS--------------CCCCTTCEEEEEEEEE
T ss_pred ceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCC--------------ccCCCCCEEEEEEEEc
Confidence 4677777765 4554432 23456788887643322 5788899999998754
No 59
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=49.36 E-value=50 Score=21.26 Aligned_cols=54 Identities=6% Similarity=0.031 Sum_probs=34.4
Q ss_pred EEEEEEEEecceEEEEecCcceEEEcCCc-CCCc--eeecCCCcEEEcCCCceEcCCCeEEEEEEEEE
Q 030170 89 LDGTVHKVLKHGVFLKCGPVENIYLTCSK-MPDY--RYVQAENPVFLSEKNPKIEKDVVVRVIVIGTK 153 (182)
Q Consensus 89 ~~g~V~~v~~~Gifv~lg~~~gl~~~s~~-~~d~--~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 153 (182)
..|+|.+++...+-++-+++. ++ +|.. .|.-... ..-..++.||+|+|.+...+
T Consensus 6 ~~G~V~~vd~~~iTi~H~pI~------~l~wPaMTM~F~v~~~-----~~l~~lk~Gd~V~F~~~~~~ 62 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEAIP------SAQWGAMTMEFAAPPA-----GLPQGLKAGDRVAFSFRLDP 62 (82)
T ss_dssp EEEEEEECCSSEEEEEECCCT------TTTCCCEEEEEECCTT-----CCCSSCSTTCEEEEEEEEET
T ss_pred EeEEEEEEccccEEEecCCcc------ccCCCceEEEEEcCCh-----hHhhcCCCCCEEEEEEEECC
Confidence 489999999988777777763 33 2322 2211100 01158999999999996543
No 60
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=45.74 E-value=60 Score=21.14 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=32.8
Q ss_pred EEEEEEEEEecce--EEEEecCcceEEEcCCcC-CCc--eeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 88 VLDGTVHKVLKHG--VFLKCGPVENIYLTCSKM-PDY--RYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 88 v~~g~V~~v~~~G--ifv~lg~~~gl~~~s~~~-~d~--~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
..+|+|+++.... +-++-+++.. +. |.. .|.-..... -..++.||+|+|.+...
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~------l~wpaMTM~F~v~~~~~-----l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAA------VNWPEMTMRFTITPQTK-----MSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGG------GTBCSEEEEEECCTTCE-----ECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCccc------CCCCceEEEEEcCChhh-----hhcCCCCCEEEEEEEEe
Confidence 3789999999875 6666677632 22 111 121110000 15799999999999754
No 61
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=43.60 E-value=59 Score=20.45 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=30.1
Q ss_pred EEEEEEEEec---ceEEEEecCcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 89 LDGTVHKVLK---HGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 89 ~~g~V~~v~~---~Gifv~lg~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
..|+|+.-++ ||+-..-+.-+.++|.|++..+ . .++.||.|++.+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~~---------------g-~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNRYFHVIKVANP---------------D-LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEEEEEGGGBSSG---------------G-GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCceEEEHhHcccC---------------C-CCCCCCEEEEEEEe
Confidence 4688888765 4554433333338888776422 1 57789999998864
No 62
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=41.91 E-value=66 Score=20.51 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=32.4
Q ss_pred EEEEEEEEecce--EEEEecCcceEEEcCCcC-CCc--eeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 89 LDGTVHKVLKHG--VFLKCGPVENIYLTCSKM-PDY--RYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 89 ~~g~V~~v~~~G--ifv~lg~~~gl~~~s~~~-~d~--~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
..|+|+++.... +-++-+++.. +. |.. .|.-..... -..++.||+|+|.+...
T Consensus 10 ~~G~V~~id~~~~~iTi~H~pI~~------l~wpaMTM~F~v~~~~~-----l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 10 ATGVVKGIDLESKKITIHHDPIAA------VNWPEMTMRFTITPQTK-----MSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEETTTTEEEEEECCBGG------GTBCSEEEEEECCTTCE-----ECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCccc------CCCCceEEEEEccChhh-----hhcCCCCCEEEEEEEEe
Confidence 789999999875 6666677632 22 211 121110000 15799999999999754
No 63
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=40.27 E-value=33 Score=21.69 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=11.9
Q ss_pred ceEcCCCeEEEEEE
Q 030170 137 PKIEKDVVVRVIVI 150 (182)
Q Consensus 137 ~~~~~Gd~VrvrV~ 150 (182)
+.++.|+.|++.+.
T Consensus 39 ~~l~~G~~V~F~~~ 52 (74)
T 2kcm_A 39 GKLVKGSMVHFDPT 52 (74)
T ss_dssp TTCCTTSEEEEEEE
T ss_pred CCCCCCCEEEEEEE
Confidence 57889999999886
No 64
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=37.28 E-value=46 Score=22.14 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCCEEEEEEEEEec-ceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEE
Q 030170 85 RGEVLDGTVHKVLK-HGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVI 150 (182)
Q Consensus 85 ~gEv~~g~V~~v~~-~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 150 (182)
..+...|+|+...+ ||+-..-+ .-|-++|.+.+..+ .+.++.||.|++.+.
T Consensus 15 ~~~~~~G~Vkwf~KGfGFI~~ddg~~DvFvH~s~i~~~---------------~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGD---------------LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSC---------------TTSCCSCCEEEEEEC
T ss_pred CCcceeEEEEEEeCCceEEecCCCCceEEEEehHhccc---------------cCCCCCCCEEEEEEE
Confidence 35678899988732 34322222 24556676666432 157888999999985
No 65
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=37.17 E-value=83 Score=20.38 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=16.1
Q ss_pred CceEcCCCeEEEEEEEEEec
Q 030170 136 NPKIEKDVVVRVIVIGTKWL 155 (182)
Q Consensus 136 ~~~~~~Gd~VrvrV~~v~~~ 155 (182)
...|++||+|++|+...+..
T Consensus 10 r~iYrPGetV~~~~~~~~~~ 29 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMDEN 29 (102)
T ss_dssp CSEECTTCEEEEEEEEECGG
T ss_pred CcccCCCCEEEEEEEEECCC
Confidence 35899999999999877653
No 66
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=34.87 E-value=84 Score=20.42 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=32.9
Q ss_pred CCCEEEEEEEEEec-ceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 85 RGEVLDGTVHKVLK-HGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 85 ~gEv~~g~V~~v~~-~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
.++...|+|+.-++ ||+-..-+ .-|-++|.+.+..+ .+.++.||.|++.+..
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~---------------~~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD---------------VDSLELGDMVEYSLSK 68 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC---------------TTTCCTTCEEEECCCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc---------------cCcCCCCCEEEEEEEE
Confidence 46778999999885 34322222 24556776665432 1467788888887753
No 67
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.33 E-value=1.1e+02 Score=20.90 Aligned_cols=52 Identities=12% Similarity=-0.077 Sum_probs=35.9
Q ss_pred ecCCCEEEEEEEEEecceEE-EEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEE
Q 030170 83 IFRGEVLDGTVHKVLKHGVF-LKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVI 150 (182)
Q Consensus 83 p~~gEv~~g~V~~v~~~Gif-v~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 150 (182)
|..|| ..|+|+.....+.| |++. ...-+.|++.-+..+ ..+..||.|.|...
T Consensus 12 p~ege-~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~---------------IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 12 PSNQQ-QIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN---------------IWIKRGDFLIVDPI 65 (111)
T ss_dssp CCSSC-EEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSC---------------CCCCSSCEEEEEEC
T ss_pred CCCCe-EEEEEEEeCCCCEEEEEeCCCCEEEEEechhhccc---------------EEEcCCCEEEEEec
Confidence 44554 67899999999988 6665 466788887765432 25667887776643
No 68
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=32.90 E-value=1.2e+02 Score=21.82 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=34.6
Q ss_pred cCCCEEEEEEEEEec---ceEEEEecC-cceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 84 FRGEVLDGTVHKVLK---HGVFLKCGP-VENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 84 ~~gEv~~g~V~~v~~---~Gifv~lg~-~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
..|+...|+|+.-+. ||+...-+. -|-++|.+.+..+ ..++.||.|.|.+..
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~----------------~~L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE----------------YVPVEGDEVTYKMCS 113 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS----------------BCCCTTCEEEEEEEE
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC----------------CcCCCCCEEEEEEEe
Confidence 356778999998875 565443332 4567777765211 367889999999875
No 69
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=31.39 E-value=61 Score=20.85 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=31.7
Q ss_pred EEEEEEEEEecceEE-EEecC-cceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEEE
Q 030170 88 VLDGTVHKVLKHGVF-LKCGP-VENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGTK 153 (182)
Q Consensus 88 v~~g~V~~v~~~Gif-v~lg~-~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 153 (182)
.++|+|++..+.|.| |.+.. ..-+-|++-.+. .+...+.+||.|.|.+..-+
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~R--------------k~~I~Il~GD~V~ve~~~yd 68 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHISGKMR--------------QHYIRILPEDRVVVELSPYD 68 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEECHHHH--------------HTTCCCCTTCEEEEEEETTE
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeCccee--------------cCCccCCCCCEEEEEECccC
Confidence 478999999988877 66642 223444443211 01135788999988765444
No 70
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.84 E-value=1.2e+02 Score=21.75 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=27.3
Q ss_pred eecCCCEEEEEEEEEecceEE-EEec-CcceEEEcCCcCC
Q 030170 82 KIFRGEVLDGTVHKVLKHGVF-LKCG-PVENIYLTCSKMP 119 (182)
Q Consensus 82 ~p~~gEv~~g~V~~v~~~Gif-v~lg-~~~gl~~~s~~~~ 119 (182)
.|..| .+.|+|+.+...+.| |++. ...-+.|++.-+.
T Consensus 27 ~p~eg-e~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmR 65 (143)
T 1d7q_A 27 FKEDG-QEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLR 65 (143)
T ss_dssp CCCTT-EEEEEEEEECSSSEEEEEETTTEEEEEECCSGGG
T ss_pred CCCCC-EEEEEEEEEcCCCEEEEEeCCCCEEEEEecccce
Confidence 34444 578999999999998 6675 4667888877654
No 71
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=25.86 E-value=69 Score=27.96 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEcCCCceEcCCCeEEEEEEEEEecc
Q 030170 131 FLSEKNPKIEKDVVVRVIVIGTKWLE 156 (182)
Q Consensus 131 ~~~~~~~~~~~Gd~VrvrV~~v~~~~ 156 (182)
++..+.-.|++||+|++|+...+.+-
T Consensus 123 FIqTDr~iYrPGqtV~~r~i~~d~~~ 148 (656)
T 4fxk_A 123 FLQTDQPIYNPGQRVRYRVFALDQKM 148 (656)
T ss_dssp EEEESCSEECTTCEEEEEEEEECSSS
T ss_pred EEECCCCCcCCCCEEEEEEEEECCcc
Confidence 33344458999999999999887643
No 72
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=24.94 E-value=61 Score=20.63 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=26.5
Q ss_pred EEEEEEEEec-ceEEEEe-c-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 89 LDGTVHKVLK-HGVFLKC-G-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 89 ~~g~V~~v~~-~Gifv~l-g-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
..|+|....+ ||+...- | .-|-++|.+.+. + . +.++.||.|.+.+..
T Consensus 9 ~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~-~--------------g-~~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 9 RRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ-D--------------G-IELQAGDEVEFSVIL 58 (79)
T ss_dssp CCEEEEECCSSEEEESCCCSSSSSEEEETTTCC-S--------------S-CCCCTTCEEECBCEE
T ss_pred ccEEEEEecccceeEeCCCCCCCcEEEEhHHcC-C--------------C-CcCCCCCEEEEEEEE
Confidence 3577776643 3432222 2 144566666653 1 1 467789999988854
No 73
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=28.65 E-value=18 Score=22.62 Aligned_cols=50 Identities=10% Similarity=-0.063 Sum_probs=28.6
Q ss_pred EEEEEEEEec---ceEEEEec-CcceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEEE
Q 030170 89 LDGTVHKVLK---HGVFLKCG-PVENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIGT 152 (182)
Q Consensus 89 ~~g~V~~v~~---~Gifv~lg-~~~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 152 (182)
+.|+|+.-++ ||+-..-+ .-|-++|.+++..+.+ +.++.|+.|.+.+..-
T Consensus 5 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~--------------~~l~~G~~V~f~~~~~ 58 (70)
T 2lss_A 5 IVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGL--------------HSLEEGQDVIFDLEEK 58 (70)
Confidence 5677776654 45433222 2445666666532211 4678899998887543
No 74
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=21.74 E-value=2.1e+02 Score=19.99 Aligned_cols=58 Identities=17% Similarity=0.028 Sum_probs=35.5
Q ss_pred cCCCEEEEEEEEEecceEEEEecC-c--ceEEEcCCcCCCceeecCCCcEEEcCCCceEcCCCeEEEEEEE
Q 030170 84 FRGEVLDGTVHKVLKHGVFLKCGP-V--ENIYLTCSKMPDYRYVQAENPVFLSEKNPKIEKDVVVRVIVIG 151 (182)
Q Consensus 84 ~~gEv~~g~V~~v~~~Gifv~lg~-~--~gl~~~s~~~~d~~~~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 151 (182)
..|.-+.|+|+.+.+.+++|.... . +..++.+++-+-+.- .....|..||+|.|--.+
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~----------~~~~~f~~gd~VEV~~~~ 73 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPA----------DYNKEITEGDEVEVYSRA 73 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC--------------CCCTTCEEEEEECC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCc----------ccccCCCCCCEEEEEecC
Confidence 558899999999999999999853 1 234444443211100 001367888888875543
No 75
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=21.32 E-value=1.5e+02 Score=20.00 Aligned_cols=26 Identities=0% Similarity=-0.128 Sum_probs=20.1
Q ss_pred CcEEEcCCCceEcCCCeEEEEEEEEE
Q 030170 128 NPVFLSEKNPKIEKDVVVRVIVIGTK 153 (182)
Q Consensus 128 ~~~~~~~~~~~~~~Gd~VrvrV~~v~ 153 (182)
+.|...++...++.||+|...+.-..
T Consensus 57 GrW~~~d~~~~lk~GD~I~Ywv~V~~ 82 (107)
T 3ie4_A 57 GRWTFRDRITALKPGDTLYYWTYVIY 82 (107)
T ss_dssp TEEEEEESSCCCCTTCEEEEEEEEEE
T ss_pred CEEEEECCCceeCCCCEEEEEEEEEE
Confidence 35766666779999999998887653
No 76
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=20.47 E-value=1.1e+02 Score=21.57 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.9
Q ss_pred CCEEEEEEEEEecceEEEEec
Q 030170 86 GEVLDGTVHKVLKHGVFLKCG 106 (182)
Q Consensus 86 gEv~~g~V~~v~~~Gifv~lg 106 (182)
|..+.|++..++..|+++++.
T Consensus 46 g~~~~~~~~DiSl~G~~I~~~ 66 (145)
T 2l74_A 46 ERRWEVLLHDVSLHGILVGQP 66 (145)
T ss_dssp TEEEEEEEEEEETTEEEEECC
T ss_pred CEEEEEEEEEeccCCCEEEcC
Confidence 999999999999999999975
Done!