BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030171
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 192 bits (488), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 118/142 (83%), Gaps = 1/142 (0%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP D
Sbjct: 9 SVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
YP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN SPL
Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPL 127
Query: 154 NSYAAALLNNKEDYRKMVQKQY 175
N+ AA + +N+ +Y+K++ ++Y
Sbjct: 128 NAQAADMWSNQTEYKKVLHEKY 149
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 14 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG 73
AT+ A++++ V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G
Sbjct: 10 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHG 68
Query: 74 GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDC 133
GT+YE L YKLSL FP YP+ P VKF T C+HPNVD GNI LDIL++KWS+ YD
Sbjct: 69 AAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDV 128
Query: 134 RTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 175
RTILLSIQSLLGEPN +SPLN++AA L N ++K +Q+ Y
Sbjct: 129 RTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
TT +RL ++ L GVS P ++I TW I G + T +E ++KLSL F
Sbjct: 5 TTPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
+YP KPP VKF + FHPNV G+ICLDILQ++WS YD IL SIQSLL EPNP S
Sbjct: 64 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 123
Query: 152 PLNSYAAALLN-NKEDYRKMVQK 173
P NS AA L N+ +Y K VQ+
Sbjct: 124 PANSLAAQLYQENRREYEKRVQQ 146
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
TT +RL ++ L GVS P ++I TW I G + T +E ++KLSL F
Sbjct: 2 TTPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
+YP KPP VKF + FHPNV G+ICLDILQ++WS YD IL SIQSLL EPNP S
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 152 PLNSYAAALLN-NKEDYRKMVQK 173
P NS AA L N+ +Y K VQ+
Sbjct: 121 PANSLAAQLYQENRREYEKRVQQ 143
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+T +RL ++ L +GVS P +I W I G +GT +E ++KL + F
Sbjct: 2 STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
+YP KPP V+F + FHPNV G+ICLDILQ++WS YD +IL SIQSLL EPNP S
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 152 PLNSYAAALLN-NKEDYRKMV 171
P NS AA L NK +Y K V
Sbjct: 121 PANSQAAQLYQENKREYEKRV 141
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 119 bits (298), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 2/142 (1%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+T +RL ++ L G+S P+ +I W I G T ++G ++KLSL+F
Sbjct: 2 STPARKRLMRDFKRLQQDPP-AGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
DYP KPP V+F + FHPN+ G+ICLDILQ++WS YD IL SIQSLL +PNP S
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 152 PLNSYAAALLN-NKEDYRKMVQ 172
P NS AA + + +K +Y + V+
Sbjct: 121 PANSEAARMYSESKREYNRRVR 142
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL + SA P G+ IF W TI G + Y+G + L + FP+DYPF
Sbjct: 7 RRIQKELREIQQDPP-CNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
K P+V F T +HPN+++ G ICLDIL+D+WS A +LLSI SLL +PNP PL+
Sbjct: 66 KAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPE 125
Query: 157 AAALLN-NKEDYRKMVQK 173
A +L NK+ + ++
Sbjct: 126 VANVLRANKKQFEDTARE 143
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+ +R+ KE +L G+ A P E+ + I G GT YEG +YKL L P Y
Sbjct: 2 IPRRITKETQNLANEPPP-GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
P +PP+V+F T +HPN+D+ G ICLDIL+DKWS A RT+LLSIQ+LL P P+ PL+
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 155 SYAAALLNNKEDYRKMVQKQY 175
S A ++ + V +Q+
Sbjct: 121 SKVAEHFKQDKNDAEHVARQW 141
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+ +R+ KE +L G+ A P E+ + I G GT YEG +YKL L P Y
Sbjct: 2 IPRRITKETQNLANEPPP-GIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
P +PP+V+F T +HPN+D+ G ICLDIL+DKWS A RT+LLSIQ+LL P P+ PL+
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 155 SYAAALLNNKEDYRKMVQKQY 175
S A ++ + V +Q+
Sbjct: 121 SKVAEHFKQDKNDAEHVARQW 141
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+T +RL ++ M GVSA P +++ W I G T YE +++L L F
Sbjct: 2 STPARRRLMRDF-KRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
+YP KPP VKF + FHPNV G ICLDILQ++W+ YD +IL SIQSL +PNP S
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 120
Query: 152 PLNSYAAALL-NNKEDYRKMVQK 173
P N AA L ++K Y K V++
Sbjct: 121 PANVEAATLFKDHKSQYVKRVKE 143
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 9 KRIQKELQDLQRDPP-AQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 68 KPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 127
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++KE Y ++ ++
Sbjct: 128 IAHIYKSDKEKYNRLARE 145
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 5/119 (4%)
Query: 37 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+R+ +EL L G D SA P G+ +F W TI G + Y G + LS+ FP DY
Sbjct: 4 KRINRELADL---GKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
PFKPP+V F T +HPN++ G+ICLDIL+D+WS A +LLSI SLL +PNP+ PL
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPL 119
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP++ F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 65 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 124
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++KE Y + ++
Sbjct: 125 IAQIYKSDKEKYNRHARE 142
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL S + SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 22 KRIQKEL-SDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 80
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP++ F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 81 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 140
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++KE Y + ++
Sbjct: 141 IAQIYKSDKEKYNRHARE 158
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 10 KRIQKELSDLQRDPP-AHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP++ F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 128
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++KE Y + ++
Sbjct: 129 IAQIYKSDKEKYNRHARE 146
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
S +R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP D
Sbjct: 3 SALKRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
YPFKPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 62 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
Query: 154 NSYAAALLNNKEDYRKMVQKQY 175
A + D + +++
Sbjct: 122 VPEIARIYKTDRDKYNRISREW 143
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 6/140 (4%)
Query: 37 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
+R+QKEL L G D SA P G+ +F W TI G + Y+G + L++ FP DY
Sbjct: 7 KRIQKELQDL---GRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
PFKPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 155 SYAAALLN-NKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 124 PEIARIYKTDRERYNQLARE 143
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 3 KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 62 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 121
Query: 157 AAALLNNKEDYRKMVQKQY 175
A + D + +++
Sbjct: 122 IARIYKTDRDKYNRISREW 140
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL + + SA P+G++I+ W TI G G++YEG + L + F DYPF
Sbjct: 6 KRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NS 155
KPP+V F T +H N++ G ICLDIL+D WS A +LLSI SLL + NP PL S
Sbjct: 65 KPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 124
Query: 156 YAAALLNNKEDYRKMVQK 173
A + N+ ++ +M ++
Sbjct: 125 IATQYMTNRAEHDRMARQ 142
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL S + SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 14 KRINKEL-SDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 73 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 132
Query: 157 AAALLNNKEDYRKMVQKQY 175
A + D + +++
Sbjct: 133 IARIYKTDRDKYNRISREW 151
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 12 KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 71 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 130
Query: 157 AAALLNNKEDYRKMVQKQY 175
A + D + +++
Sbjct: 131 IARIYKTDRDKYNRISREW 149
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 14 KRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 73 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 132
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 133 IARIYQTDREKYNRIARE 150
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 4 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 123 IARIYKTDREKYNRIARE 140
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 125 IARIYKTDREKYNRIARE 142
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 125 IARIYKTDREKYNRIARE 142
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 9 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 68 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 127
Query: 157 AAALLN-NKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 128 IARIYKTDREKYNRIARE 145
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 22 KRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 81 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 140
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 141 IARIYKTDREKYNRIARE 158
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + + Y G + L++ FP DYPF
Sbjct: 24 KRINKELNDLS-KDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G ICLDIL+D+WS A +LLSI SLL +PNP+ PL
Sbjct: 83 KPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142
Query: 157 AAAL 160
A L
Sbjct: 143 IAHL 146
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Query: 26 SPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYK 85
S N+ ++ +R+QKEL + + SA P+G++I+ W TI G G++YEG +
Sbjct: 40 SKNSKLLSTSAKRIQKELADITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF 98
Query: 86 LSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145
L + F +YPFKPP+V F T +H N++ G ICLDIL+D WS A +LLSI SLL
Sbjct: 99 LDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLT 158
Query: 146 EPNPESPL-NSYAAALLNNKEDYRKMVQK 173
+ NP PL S A + N+ ++ +M ++
Sbjct: 159 DCNPADPLVGSIATQYMTNRAEHDRMARQ 187
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
RLQKEL + + A + + F W+G I+G +GT YEG + L++ P DYP+
Sbjct: 27 RLQKELKDIENENVQ-EIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 98 PPQVKFETMCFHPNV-DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
PP++KF T +HPN+ Q G ICLD+L+++WS A RT LLSIQ+LL +P P+ P ++
Sbjct: 86 PPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAE 145
Query: 157 AAALLNNKEDYRKMVQ 172
A + KE++ V+
Sbjct: 146 VAKMY--KENHALFVK 159
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +W A +LLSI SLL +PNP+ PL
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 125 IARIYKTDREKYNRIARE 142
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLD L+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 125 IARIYKTDREKYNRIARE 142
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W T G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+ICLDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 125 IARIYKTDREKYNRIARE 142
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
S ++R+ KEL L SA P G+ ++ W +I G + Y G + LS+ FP D
Sbjct: 2 SSSKRIAKELSDLERDPP-TSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
YPFKPP++ F T +HPN++ GNICLDIL+D+WS A +LLSI SLL + NP+ PL
Sbjct: 61 YPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Query: 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
++R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DY
Sbjct: 1 ASKRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 59
Query: 95 PFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
PFKPP+V F T +HPN++ G+I LDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 60 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLV 119
Query: 155 SYAAALLN-NKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 120 PEIARIYKTDREKYNRIARE 139
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 4 KRINKELSDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+I LDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 157 AAALLNNKEDYRKMVQKQY 175
A + D + +++
Sbjct: 123 IARIYKTDRDKYNRISREW 141
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 7 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+I LDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 66 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 125
Query: 157 AAALLN-NKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 126 IARIYKTDREKYNRIARE 143
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 22 KRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+I LDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 81 KPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 140
Query: 157 AAALLN-NKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 141 IARIYKTDREKYNRIARE 158
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+QKEL L A P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 10 KRIQKELSDLQRDP-PAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP++ F T +HPN++ G+I LDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 128
Query: 157 AAALL-NNKEDYRKMVQK 173
A + ++KE Y + ++
Sbjct: 129 IAQIYKSDKEKYNRHARE 146
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L SA P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 6 KRIHKELNDLARDPP-AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HPN++ G+I LDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 157 AAALLN-NKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 125 IARIYKTDREKYNRIARE 142
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 2 ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
DYP + P+V+F T +HPN+D+ G ICLD+L+ WS A RT+LLSIQ+LL PNP P
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 153 L-NSYAAALLNNKE 165
L N A + N++
Sbjct: 121 LANDVAEDWIKNEQ 134
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+ + +R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P
Sbjct: 3 SAGLPRRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
+YP P+V+F T +HPNVD+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+
Sbjct: 62 EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
Query: 152 PLNSYAA 158
PL + A
Sbjct: 122 PLANDVA 128
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 6 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 64
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL +
Sbjct: 65 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
Query: 157 AA 158
A
Sbjct: 125 VA 126
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 4 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL +
Sbjct: 63 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 122
Query: 157 AA 158
A
Sbjct: 123 VA 124
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 3 AASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
DYP + P+V+F T +HPN+D+ G ICLD+L+ WS A RT+LLSIQ+LL PNP
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 152 PL-NSYAAALLNNKE 165
PL N A + N++
Sbjct: 122 PLANDVAEDWIKNEQ 136
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 9 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 67
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL +
Sbjct: 68 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 127
Query: 157 AA 158
A
Sbjct: 128 VA 129
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KE L+ G+ A P+ + + I G + + +EG ++KL L P +YP
Sbjct: 11 RRIIKETQRLLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 69
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
P+V+F T +HPNVD+ G ICLDIL+DKWS A RT+LLSIQ+LL PNP+ PL +
Sbjct: 70 AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 129
Query: 157 AA 158
A
Sbjct: 130 VA 131
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96
+R+ KEL L A P G+ +F W TI G + Y+G + L++ FP DYPF
Sbjct: 4 KRIHKELNDLARDPP-AQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSY 156
KPP+V F T +HP ++ G+I LDIL+ +WS A +LLSI SLL +PNP+ PL
Sbjct: 63 KPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 157 AAALLN-NKEDYRKMVQK 173
A + ++E Y ++ ++
Sbjct: 123 IARIYKTDREKYNRIARE 140
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 54 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV- 112
GVSA G I W G I G GT YEG + L + P DYP+ PP++KF T +HPN+
Sbjct: 64 GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123
Query: 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 161
Q G ICLDIL+ +WS A RT LLSIQ++L +P P P ++ A ++
Sbjct: 124 SQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 2 ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
DYP + P+V+F T +HPN+D+ G I LD+L+ WS A RT+LLSIQ+LL PNP P
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 153 L-NSYAAALLNNKE 165
L N A + N++
Sbjct: 121 LANDVAEDWIKNEQ 134
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
S+ +R+ KE L+ S G++A P +++ + TIEG + + YE ++L L P
Sbjct: 2 ASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
DYP + P+V+F T +HP +D+ G I LD+L+ WS A RT+LLSIQ+LL PNP P
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 153 L-NSYAAALLNNKE 165
L N A + N++
Sbjct: 121 LANDVAEDWIKNEQ 134
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
+ + + KE+ +L D G+ FP E + TIEG +GT Y G +++ L D
Sbjct: 13 HIIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKD 71
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
+P PP+ F T FHPNV G IC+++L+ W++ R +LL+I+ LL PNPES L
Sbjct: 72 FPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESAL 131
Query: 154 NSYAAA-LLNNKEDY 167
N A LL N E+Y
Sbjct: 132 NEEAGRLLLENYEEY 146
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 15/148 (10%)
Query: 39 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98
L+K+L + D + + I+ W + G T+YEG +K L FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 99 PQVKFETMCFHPNVDQYGNICLDILQD-------------KWSSAYDCRTILLSIQSLLG 145
P++KF + +HPN+D+ GN+C+ IL D +W + TILLS+ S+L
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 146 EPNPESPLNSYAAALLNNKEDYRKMVQK 173
+PN ESP N AA + +E+Y + +K
Sbjct: 128 DPNFESPANVDAAKM--QRENYAEFKKK 153
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
+S +R+ KE+ ++ F I GT G GT YEG + + + P+
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 93 DYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151
+YPFKPP+++F+T +HPN+ G ICLDIL++ WS ++ L+S+Q+LL P P
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 152 PLNS-YAAALLNNKEDYRK 169
P ++ A L ++E + K
Sbjct: 121 PQDAEVAQHYLRDRESFNK 139
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
S +R+ KE+ ++ F I GT G GT YEG + + + P++
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 94 YPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152
YPFKPP+++F+T +HPN+ G ICLDIL++ WS ++ L+S+Q+LL P P P
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 153 LNS-YAAALLNNKEDYRK 169
++ A L ++E + K
Sbjct: 121 QDAEVAQHYLRDRESFNK 138
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 54 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113
G++A P E + W IEG + ++++GL ++L++ F +Y + PP VKF T+ FHPNVD
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 114 QY-GNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKM 170
+ G C+D L +KW++ Y +ILL++Q +L P E+P+N AA +L E +
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRT 161
Query: 171 VQKQY 175
+ + +
Sbjct: 162 ILRLF 166
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN +SP + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
RL++EL ++ + G++ + + + + I GG T YE +KL + P YPF+
Sbjct: 8 RLKREL-HMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFE 66
Query: 98 PPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 153
PPQ++F T +HPN+D G ICLD+L + W + + T+L SIQ L+ EPNP+ PL
Sbjct: 67 PPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN ++P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 33 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 93 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 152
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 21/148 (14%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114
V+ EG+ ++ W I G T YEG +K L+FP+DYP+ PP +F T +HPN+ +
Sbjct: 29 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87
Query: 115 YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 161
G++C+ IL ++W+ + RTILLS+ SLL EPN SP N A+ +
Sbjct: 88 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
Query: 162 N-------NKEDYRKMVQKQYFAGEFES 182
+Y +++KQ + ++
Sbjct: 148 RKWKESKGKDREYTDIIRKQVLGTKVDA 175
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 153
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 153
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 37 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 97 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 156
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 21/148 (14%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114
V+ EG+ ++ W I G T YEG +K L+FP+DYP+ PP +F T +HPN+ +
Sbjct: 26 VTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 84
Query: 115 YGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 161
G++C+ IL ++W+ + RTILLS+ SLL EPN SP N A+ +
Sbjct: 85 TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144
Query: 162 N-------NKEDYRKMVQKQYFAGEFES 182
+Y +++KQ + ++
Sbjct: 145 RKWKESKGKDREYTDIIRKQVLGTKVDA 172
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHP V G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+CL IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 154
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 39 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98
L+++L L + + + + ++ W I G T+YEG +K L FP DYP +P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 99 PQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLG 145
P++KF T +HPNVD+ G++C+ IL +++W + TI++S+ S+L
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141
Query: 146 EPNPESPLNSYAA 158
+PN +SP N AA
Sbjct: 142 DPNGDSPANVDAA 154
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 174
+ L IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 92 VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Query: 73 GGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAY 131
G +GT YEG +K+ + P YPFK P + F FHPN+D+ G +CLD++ W++ Y
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 132 DCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK--QYFAGE 179
D I S + LL PNP PLN AAA+ L+ E+Y++ +++ Q +A E
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 59 PEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
P+G ++ W I G KGT +EG +KL + F DYP PP+ KFE FHPNV G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 118 ICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQ 174
+ L IL++ W A + ILL IQ LL EPN + P + A + N+ +Y K V+ Q
Sbjct: 92 VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQ 151
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 61 GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICL 120
G + W I G T +EG YKL++ FP +YP +PP+ +F FHPNV G +CL
Sbjct: 41 GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCL 100
Query: 121 DILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQ 174
IL ++ W A + ILL IQ LL +PN SP + A + +K +Y K V+ Q
Sbjct: 101 SILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ 157
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 32 TTSVTQRLQKELMSLMM-SGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
++ R+QK++ L + D+ +F + + + + I +G Y+ + S +
Sbjct: 4 ASAAQLRIQKDINELNLPKTCDI---SFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKV 59
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150
YP PP+VK ET +HPN+D GN+CL+IL++ W +I+ +Q L EPNPE
Sbjct: 60 GQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPE 119
Query: 151 SPLNSYAAALL-NNKEDYRKMVQKQYFAG 178
PLN AA +L NN+ + + VQ+ G
Sbjct: 120 DPLNKEAAEVLQNNRRLFEQNVQRSXRGG 148
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 78 MYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTIL 137
Y+ + S + YP PP+VK ETM +HPN+D GN+ L+IL++ W +I+
Sbjct: 67 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSII 126
Query: 138 LSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 178
+Q L EPNPE PLN AA +L NN+ + + VQ+ G
Sbjct: 127 YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD- 125
W I G +GT + G Y +++ +P +YP KPP+VKF +HPNV G ICL IL +
Sbjct: 43 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 102
Query: 126 -KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA-AALLNNKEDYRKMV---QKQY 175
W A + I+L +Q LL PNP SP A + NK +Y K V KQY
Sbjct: 103 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLRF 90
+ + +RL KEL L+ G+ A P+ E+ IF W I+G T Y + L F
Sbjct: 2 SKTAQKRLLKELQQLIKDSPP-GIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTIL 137
P DYP PP++ F HPN+ G +C+ IL +++WS IL
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120
Query: 138 LSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 172
LS+ S+L EPN ES N A L +N+ ++ + V+
Sbjct: 121 LSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD- 125
W I G +GT + G Y +++ +P +YP KPP+VKF +HPNV G ICL IL +
Sbjct: 41 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 100
Query: 126 -KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA-AALLNNKEDYRKMV---QKQY 175
W A + I+L +Q LL PNP SP A + NK +Y K V KQY
Sbjct: 101 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
TS+T++ Q + L+M+G DL ++ S + G GT YEG +K+ + P
Sbjct: 2 TSLTRK-QCDFTKLIMAGYDLELN----NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPD 56
Query: 93 DYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPE 150
DYPF P + F HPNVD+ G++CLD++ W+ Y + + + LL PNP
Sbjct: 57 DYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPS 116
Query: 151 SPLNSYAAALLNNKEDYRKMVQKQY 175
PLNS AA+LL ++ + K+Y
Sbjct: 117 DPLNSDAASLLMKDKNIYEEKVKEY 141
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLD 93
+ ++RL KEL + G + + ++ TW G I Y+ ++++ + FP +
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPD-NPPYDKGAFRIEINFPAE 60
Query: 94 YPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESP 152
YPFKPP++ F+T +HPN+D+ G +CL ++ + W A ++ S+ +L+ +P PE P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 153 LNS 155
L +
Sbjct: 121 LRA 123
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFP 91
+ + ++RL KEL + G + + ++ TW G I Y+ ++++ + FP
Sbjct: 2 SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPD-NPPYDKGAFRIEINFP 60
Query: 92 LDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPE 150
+YPFKPP++ F+T +HPN+D+ G +CL ++ + W A ++ S+ +L+ +P PE
Sbjct: 61 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 120
Query: 151 SPLNS 155
PL +
Sbjct: 121 HPLRA 125
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 33 TSVTQRLQKELMSLM------MSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKL 86
S+ +RLQKEL++L M+ + V SI WI +EG GT+YEG ++L
Sbjct: 21 ASMQKRLQKELLALQNDPPPGMTLNEKSVQ-----NSITQWIVDMEGAPGTLYEGEKFQL 75
Query: 87 SLRFPLDYPFKPPQVKF--ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 144
+F YPF PQV F E + HP+V G+ICL IL + WS A +++ LSI S+L
Sbjct: 76 LFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 135
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
+ +RL E L ++ + G+ A P E + F W I G + T +E + L FPL
Sbjct: 3 TALKRLMAEYKQLTLNPPE-GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 61
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLS 139
DYP PP+++F FHPN+ G +C+ IL ++WS ILLS
Sbjct: 62 DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 121
Query: 140 IQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 173
+ S+L EPN ES N A+ + +++E + K+ ++
Sbjct: 122 VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 156
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
+ +RL E L ++ + G+ A P E + F W I G + T +E + L FPL
Sbjct: 7 TALKRLMAEYKQLTLNPPE-GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 65
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLS 139
DYP PP+++F FHPN+ G +C+ IL ++WS ILLS
Sbjct: 66 DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 125
Query: 140 IQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 173
+ S+L EPN ES N A+ + +++E + K+ ++
Sbjct: 126 VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 160
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
+ +RL E L ++ + G+ A P E + F W I G + T +E + L FPL
Sbjct: 6 TALKRLMAEYKQLTLNPPE-GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 64
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLS 139
DYP PP+++F FHPN+ G +C+ IL ++WS ILLS
Sbjct: 65 DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 124
Query: 140 IQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 173
+ S+L EPN ES N A+ + +++E + K+ ++
Sbjct: 125 VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 159
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
+ +RL E L ++ + G+ A P E + F W I G + T +E + L FPL
Sbjct: 9 TALKRLMAEYKQLTLNPPE-GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 67
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLS 139
DYP PP+++F FHPN+ G +C+ IL ++WS ILLS
Sbjct: 68 DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 127
Query: 140 IQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 173
+ S+L EPN ES N A+ + +++E + K+ ++
Sbjct: 128 VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 162
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 9/130 (6%)
Query: 35 VTQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLR 89
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 58 AVQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIK 114
Query: 90 FPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPN 148
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT+LLS+Q+LL
Sbjct: 115 IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAE 174
Query: 149 PESPLNSYAA 158
P+ P ++ A
Sbjct: 175 PDDPQDAVVA 184
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 36 TQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRF 90
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 7 VQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKI 63
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 149
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT+LLS+Q+LL P
Sbjct: 64 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 123
Query: 150 ESPLNSYAA 158
+ P ++ A
Sbjct: 124 DDPQDAVVA 132
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 36 TQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRF 90
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 8 VQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKI 64
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 149
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT+LLS+Q+LL P
Sbjct: 65 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 124
Query: 150 ESPLNSYAA 158
+ P ++ A
Sbjct: 125 DDPQDAVVA 133
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 36 TQRLQKELMSLM----MSGGDLGVSAFPEGESIFTWI-GTIEGGKGTMYEGLSYKLSLRF 90
QR+++E ++ S + V E FT + G I G T YEG Y+L ++
Sbjct: 10 VQRIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKI 66
Query: 91 PLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 149
P YPF PP+V+F T +HPN+ G ICLDIL+D+W++A RT+LLS+Q+LL P
Sbjct: 67 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 126
Query: 150 ESPLNSYAA 158
+ P ++ A
Sbjct: 127 DDPQDAVVA 135
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 69 GTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKW 127
G I G T YEG Y+L ++ P YPF PP+V+F T +HPN+ G ICLDIL+D+W
Sbjct: 58 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW 117
Query: 128 SSAYDCRTILLSIQSLLGEPNPESPLNSYAA 158
++A RT+LLS+Q+LL P+ P ++ A
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 148
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQD 125
W+ +G +GT YE ++ L ++ P DYPFK P + F HPNVD+ G++CLD++
Sbjct: 41 WV-EFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
Query: 126 KWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAALLN 162
W+ Y I + + LL PNP PLN AA LL+
Sbjct: 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 137
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 87 SLRFPLD----YPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQS 142
S+ F LD YP +PP+V FHPN+D GN+CL+IL++ WS A D ++I+ +
Sbjct: 81 SINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLF 140
Query: 143 LLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAGEFE 181
L EPNP PLN AA LL ++++ + V+ G E
Sbjct: 141 LFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIE 180
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
+ R+ KEL L + + ++ W + + Y ++ L + FP +YP
Sbjct: 3 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYP 61
Query: 96 FKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
FKPP +KF T +HPNVD+ G ICL I+ + W +L ++ L+ PN PL
Sbjct: 62 FKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLR 121
Query: 155 SYAAALL-NNKEDYRK 169
A LL N E +RK
Sbjct: 122 MDLADLLTQNPELFRK 137
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95
+ R+ KEL L + + ++ W + + Y ++ L + FP +YP
Sbjct: 6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPP-YHLKAFNLRISFPPEYP 64
Query: 96 FKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLN 154
FKPP +KF T +HPNVD+ G ICL I+ + W +L ++ L+ PN PL
Sbjct: 65 FKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLR 124
Query: 155 SYAAALL-NNKEDYRK 169
A LL N E +RK
Sbjct: 125 MDLADLLTQNPELFRK 140
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
R+QKEL + + + + + +I WI G + T+Y YKL + FP DYP K
Sbjct: 10 RIQKELHNFL-NNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 68
Query: 98 PPQVKF-ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145
PP V F + H +V G+ICL +L D ++ + ++LSI S+L
Sbjct: 69 PPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 117
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 125 -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 181
++W+ +D + ++ LL EP +SPL+ A++ + Y+ +V +YF E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIV--KYFLAERE 167
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 125 -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 181
++W+ +D + ++ LL EP +SPL+ ++ + Y+ +V +YF E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQGIV--KYFLAERE 167
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97
R+QKEL + + + + +I WI G + T+Y YK+ + FP +YP K
Sbjct: 24 RIQKELNNFL-KNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLK 82
Query: 98 PPQVKF-ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145
PP V F + H +V G+ICL +L D ++ + ++LSI S+L
Sbjct: 83 PPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF-ETMCFHPNVDQY-GNICLDILQ 124
W I G T YE +++ + P YP PP++ F + H NV G ICL+IL+
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 125 -DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN--NKEDYRKMVQKQYFAGEFE 181
++W+ +D + ++ LL EP +SPL+ ++ + Y+ +V +YF E E
Sbjct: 110 PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV--KYFLAERE 167
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 58 FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
FP+ + + T+ +G Y+G ++ P Y PP+VK T +HPN+ + G
Sbjct: 38 FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 118 ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAA-ALLNNKEDYRK 169
ICL +L++ W+ + ++ + SL + N + PLN AA L +KED+R
Sbjct: 97 ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRN 156
Query: 170 MVQ 172
V
Sbjct: 157 KVD 159
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 58 FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
FP+ + + T+ +G Y+G ++ P Y PP+VK T +HPN+ + G
Sbjct: 38 FPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGE 96
Query: 118 ICLDILQDK------WSSAYDCRTILLSIQSLLGE-PNPESPLNSYAA-ALLNNKEDYRK 169
ICL +L++ W+ + ++ + SL + N + PLN AA L +KED+R
Sbjct: 97 ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRN 156
Query: 170 MVQ 172
V
Sbjct: 157 KVD 159
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPL 92
T+ TQRL+++ + + + A P +I W + G + T YEG Y L FP
Sbjct: 13 TTATQRLKQDYLRIKKDPVPY-ICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71
Query: 93 DYPFKPPQVKFETMCFHPNVDQYGN--ICL---DILQDKWSSAYDCRTILLSIQSLLGEP 147
++PFKPP + T PN N +CL D D W+ A+ TIL + S + E
Sbjct: 72 EFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 127
Query: 148 NP 149
P
Sbjct: 128 GP 129
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 60 EGESIFTWIGTIEGGKGTMYEGL--SYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117
+ ++I+ WI ++ ++Y G +Y+LS+ F DYP +PP V+F T + P V G
Sbjct: 45 DTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGG 104
Query: 118 ICLDILQDKWS 128
IC ++ D W+
Sbjct: 105 ICDRMVNDFWT 115
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 119
++ W TI G GT++E Y L++ +YP PP VKF+T VD G +
Sbjct: 57 TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 116
Query: 120 LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESP 152
L IL++ W+ Y TIL+S+ Q +L N P
Sbjct: 117 LHILKN-WNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNIC--- 119
++ W TI G GT++E Y L++ +YP PP VKF+T VD G +
Sbjct: 53 TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNN 112
Query: 120 LDILQDKWSSAYDCRTILLSI-QSLLGEPNPESP 152
L IL++ W+ Y TIL+S+ Q +L N P
Sbjct: 113 LHILKN-WNRNYTIETILISLRQEMLSSANKRLP 145
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 71 IEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET-----MCFHPNVDQYGNICLDIL-- 123
I G T Y ++ + FP DYP PP V ET + F+PN+ G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 124 -----QDKWS-SAYDCRTILLSIQSLL 144
++KW+ +L+S+QSL+
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLI 202
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T+YE Y L + Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 95 PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLL 144
P PP V+F T V+ + + +L KW ++Y + +L ++ L+
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T+YE Y L + Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 95 PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLL 144
P PP V+F T V+ + + +L KW ++Y + +L ++ L+
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T+YE Y L + Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 95 PFKPPQVKFETMCFHPNVDQYGNI----CLDILQDKWSSAYDCRTILLSIQSLL 144
P PP V+F T V+ + + +L KW ++Y + +L ++ L+
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 86 LSLRFPLDYPFKPPQVKFETMCFHPN-VDQYGNICLDILQDK-WSSAYDCRTILLSIQSL 143
L+ F ++PF PP V+ + V G IC+++L + WSSAY ++++ I +
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISAT 131
Query: 144 L--GEPNPESPLNSYAAALLNNKEDYRKMVQ 172
L G+ + N +L ++ Y+ +VQ
Sbjct: 132 LVKGKARVQFGANKSQYSLTRAQQSYKSLVQ 162
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 63 SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLD 121
++ W GTI G + +E Y LS+ +YP PP+V F + P V+ G + D
Sbjct: 37 TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 96
Query: 122 I--LQDKWSSAYDCRTILLSIQSLLGEP 147
L+D W AY T+LL ++ + P
Sbjct: 97 FHTLRD-WKRAYTMETLLLDLRKEMATP 123
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 67 WIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDI--L 123
W GTI G + +E Y LS+ +YP PP+V F + P V+ G + D L
Sbjct: 42 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 101
Query: 124 QDKWSSAYDCRTILLSIQSLLGEP 147
+D W AY T+LL ++ + P
Sbjct: 102 RD-WKRAYTMETLLLDLRKEMATP 124
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRTILLSIQSLL 144
P PP V+F T ++ + + +L KW ++Y + +L ++ L+
Sbjct: 68 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRTILLSIQSLL 144
P PP V+F T ++ + + +L KW ++Y + +L ++ L+
Sbjct: 74 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRTILLSIQSLL 144
P PP V+F T ++ + + +L KW ++Y + +L ++ L+
Sbjct: 79 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 38 RLQKELMSLMMSGGDLGVSAFPEGESIFT---WIGTIEGGKGTMYEGLSYKLSLRFPLDY 94
RL +EL GD VS E + T W G I G T YE Y L + Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 95 PFKPPQVKFETMCFHPNVDQYGNIC----LDILQDKWSSAYDCRTILLSIQSLL 144
P PP V+F T ++ + + +L KW ++Y + +L ++ L+
Sbjct: 69 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 80 EGLSYKL-SLRFPLDYPFKPPQVKFETMCFHPN-VDQYGNICLDILQDK-WSSAYDCRTI 136
EG+ Y L + F ++PF PP V+ V G +C+++L + WSSAY ++
Sbjct: 86 EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV 145
Query: 137 LLSIQSLL--GEPNPESPLNSYAAALLNNKEDYRKMVQ 172
++ I + L G+ + N L ++ Y +VQ
Sbjct: 146 IMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 183
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 72 EGGKG---TMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH-------PNVDQYGNICLD 121
GG G T +G Y L+ F L YP+ PQV + FH PNV + N L+
Sbjct: 269 HGGAGNVITFEDGRLYDLANVFMLAYPYGYPQV-MSSYDFHGDTDAGGPNVPVHNNGNLE 327
Query: 122 ILQDKW 127
W
Sbjct: 328 CFASNW 333
>pdb|1OCC|A Chain A, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|N Chain N, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|A Chain A, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|N Chain N, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|A Chain A, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|N Chain N, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|2Y69|A Chain A, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|N Chain N, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2YBB|L Chain L, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 514
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
+ A P G +F+W+ T+ GG + + L F
Sbjct: 311 IIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIF 346
>pdb|1V54|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|A Chain A, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|N Chain N, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|A Chain A, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|N Chain N, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|A Chain A, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|N Chain N, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|A Chain A, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|N Chain N, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|A Chain A, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|N Chain N, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|A Chain A, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|N Chain N, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|A Chain A, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|N Chain N, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
Length = 514
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 55 VSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRF 90
+ A P G +F+W+ T+ GG + + L F
Sbjct: 311 IIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIF 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,613,616
Number of Sequences: 62578
Number of extensions: 220870
Number of successful extensions: 752
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 125
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 48 (23.1 bits)