Query 030171
Match_columns 182
No_of_seqs 156 out of 1139
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 4.9E-54 1.1E-58 319.0 14.3 146 35-181 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.4E-53 9.5E-58 320.1 16.9 146 34-180 5-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.3E-49 2.7E-54 303.5 18.0 146 35-181 3-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 2.1E-49 4.6E-54 300.9 17.4 144 35-179 2-146 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 3.2E-49 6.9E-54 286.1 13.9 144 33-177 3-147 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 6.7E-45 1.5E-49 270.7 15.9 143 34-177 5-162 (171)
7 KOG0421 Ubiquitin-protein liga 100.0 8.1E-45 1.8E-49 266.8 14.6 159 18-178 13-172 (175)
8 KOG0424 Ubiquitin-protein liga 100.0 1.3E-43 2.9E-48 260.3 14.8 147 33-180 3-157 (158)
9 KOG0418 Ubiquitin-protein liga 100.0 8E-44 1.7E-48 272.3 13.7 146 35-181 4-154 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 2.5E-43 5.5E-48 265.3 14.0 137 38-175 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-42 2.5E-47 262.1 15.8 138 37-175 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 5.8E-42 1.3E-46 259.4 16.8 142 37-179 1-145 (145)
13 KOG0426 Ubiquitin-protein liga 100.0 3E-42 6.5E-47 249.9 14.1 144 33-177 3-161 (165)
14 KOG0422 Ubiquitin-protein liga 100.0 9.5E-39 2.1E-43 233.6 13.2 145 34-180 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 1E-38 2.3E-43 240.5 11.6 143 35-181 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 8.1E-38 1.8E-42 236.1 12.0 150 28-181 22-176 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 2E-36 4.4E-41 228.7 7.0 148 33-181 9-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 2.7E-31 5.8E-36 192.7 12.3 120 32-153 13-134 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 3.3E-28 7.2E-33 190.0 14.7 111 31-146 2-117 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.8E-24 4E-29 169.6 13.2 145 31-177 16-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 1.5E-21 3.2E-26 155.5 10.1 112 33-148 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 6.2E-18 1.3E-22 156.7 6.9 118 34-152 851-979 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1.3E-15 2.8E-20 141.5 11.5 114 32-146 280-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 1.4E-13 3E-18 100.8 7.4 111 35-145 6-122 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 7.8E-09 1.7E-13 73.9 5.9 92 83-175 12-110 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 1.1E-07 2.4E-12 70.9 7.1 67 80-146 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 2.7E-06 6E-11 62.5 8.4 84 61-145 25-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.4 3.2E-07 6.8E-12 68.3 3.2 97 29-137 19-135 (161)
29 KOG3357 Uncharacterized conser 97.9 3.1E-05 6.8E-10 56.9 6.0 104 27-137 20-138 (167)
30 KOG2391 Vacuolar sorting prote 97.7 0.00036 7.9E-09 59.0 9.2 112 34-148 20-139 (365)
31 PF05773 RWD: RWD domain; Int 96.5 0.011 2.4E-07 41.7 6.2 70 37-108 4-75 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.4 0.038 8.3E-07 40.6 8.8 90 53-145 12-120 (122)
33 smart00591 RWD domain in RING 95.9 0.058 1.3E-06 37.6 7.5 26 80-105 39-64 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.4 0.028 6.1E-07 43.3 4.6 61 85-145 56-125 (162)
35 PF09765 WD-3: WD-repeat regio 85.6 2 4.2E-05 36.3 5.4 88 33-144 98-186 (291)
36 KOG0309 Conserved WD40 repeat- 82.7 5.5 0.00012 37.8 7.3 70 35-106 421-491 (1081)
37 PF14460 Prok-E2_D: Prokaryoti 81.7 2.1 4.6E-05 33.2 3.8 45 105-152 90-137 (175)
38 KOG4018 Uncharacterized conser 76.9 7 0.00015 31.4 5.4 60 39-102 7-69 (215)
39 PF06113 BRE: Brain and reprod 67.7 15 0.00032 31.6 5.6 66 64-141 53-121 (333)
40 TIGR03737 PRTRC_B PRTRC system 66.3 9.8 0.00021 31.0 4.1 39 110-152 139-178 (228)
41 cd00421 intradiol_dioxygenase 54.0 18 0.00039 27.0 3.5 26 80-105 64-90 (146)
42 cd03457 intradiol_dioxygenase_ 51.0 21 0.00046 28.1 3.5 26 80-105 85-110 (188)
43 smart00340 HALZ homeobox assoc 50.9 16 0.00034 21.7 2.1 14 35-48 20-33 (44)
44 PF09606 Med15: ARC105 or Med1 46.0 6.8 0.00015 37.5 0.0 28 81-108 713-740 (799)
45 PF03366 YEATS: YEATS family; 43.0 81 0.0017 21.4 5.0 42 65-108 2-43 (84)
46 cd03459 3,4-PCD Protocatechuat 41.9 37 0.00079 25.9 3.5 25 81-105 72-101 (158)
47 KOG0177 20S proteasome, regula 41.4 14 0.0003 29.3 1.1 31 115-145 135-165 (200)
48 KOG4274 Positive cofactor 2 (P 37.1 2.9E+02 0.0063 25.9 8.8 89 31-151 616-708 (742)
49 PF00845 Gemini_BL1: Geminivir 35.8 74 0.0016 26.3 4.5 47 63-109 101-155 (276)
50 cd07981 TAF12 TATA Binding Pro 35.0 99 0.0021 20.1 4.3 42 139-180 6-48 (72)
51 PF14135 DUF4302: Domain of un 33.6 96 0.0021 25.0 4.9 70 34-115 9-102 (235)
52 PF14282 FlxA: FlxA-like prote 32.8 83 0.0018 22.2 3.9 21 28-48 13-33 (106)
53 TIGR02423 protocat_alph protoc 32.7 57 0.0012 25.8 3.4 25 80-104 95-124 (193)
54 KOG1047 Bifunctional leukotrie 31.9 43 0.00093 30.9 2.8 29 77-106 248-279 (613)
55 KOG0662 Cyclin-dependent kinas 31.7 39 0.00084 27.1 2.2 56 96-151 167-226 (292)
56 cd03463 3,4-PCD_alpha Protocat 30.2 68 0.0015 25.2 3.4 24 81-104 92-120 (185)
57 PF06113 BRE: Brain and reprod 29.6 71 0.0015 27.6 3.6 25 81-105 305-329 (333)
58 PF08203 RNA_polI_A14: Yeast R 28.6 44 0.00096 22.5 1.8 15 32-46 57-71 (76)
59 KOG2851 Eukaryotic-type DNA pr 28.2 1.2E+02 0.0027 26.5 4.8 33 111-143 331-369 (412)
60 KOG4445 Uncharacterized conser 28.1 71 0.0015 27.3 3.3 25 82-106 45-69 (368)
61 PF12652 CotJB: CotJB protein; 26.9 1.1E+02 0.0024 20.5 3.5 30 150-179 24-54 (78)
62 cd05845 Ig2_L1-CAM_like Second 26.6 1.4E+02 0.003 20.6 4.1 26 79-106 16-41 (95)
63 smart00803 TAF TATA box bindin 26.0 1.8E+02 0.0038 18.7 4.2 28 152-179 19-47 (65)
64 KOG3285 Spindle assembly check 25.3 2E+02 0.0043 22.7 5.1 58 31-100 116-173 (203)
65 PF03847 TFIID_20kDa: Transcri 24.8 2E+02 0.0043 18.7 4.4 41 139-179 4-45 (68)
66 COG0544 Tig FKBP-type peptidyl 23.6 2.1E+02 0.0045 25.7 5.6 16 82-97 209-224 (441)
67 PHA03200 uracil DNA glycosylas 22.7 94 0.002 25.8 3.0 37 63-102 81-118 (255)
68 PF13950 Epimerase_Csub: UDP-g 22.5 84 0.0018 19.9 2.2 19 126-144 37-55 (62)
69 PF04881 Adeno_GP19K: Adenovir 22.3 1.4E+02 0.0031 22.2 3.6 30 61-90 44-74 (139)
70 COG4079 Uncharacterized protei 21.3 1.7E+02 0.0037 24.3 4.2 57 122-179 137-211 (293)
71 PF12065 DUF3545: Protein of u 20.0 71 0.0015 20.4 1.4 12 37-48 37-48 (59)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-54 Score=319.01 Aligned_cols=146 Identities=42% Similarity=0.752 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeC
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 114 (182)
+.+||.|||++|++ ++++||++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~-dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLR-DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhc-CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 45699999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+|.||+|+|++.|+|+++|..||++|++||.+|++++|++.+++++|+.| .+|+++||+|++|||+.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999973
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-53 Score=320.09 Aligned_cols=146 Identities=51% Similarity=0.817 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
.+.+||++|++.|++ ++++++++.+.++ |+++|+++|.||.+|||+||.|++.|.||++||++||+|+|.++||||||
T Consensus 5 ~a~~RL~kE~~~l~~-~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 5 SALKRLLKELKKLQK-DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred hHHHHHHHHHHHHhc-CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 389999999999999 9999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
+.+|+||+++|+++|+|+++|++||.+|+++|.+||.++|+|.|||++|++| ++|.++||+++++||.
T Consensus 84 ~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 84 DPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999985
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-49 Score=303.54 Aligned_cols=146 Identities=40% Similarity=0.680 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeC
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 114 (182)
+.|||++|+++|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~kRl~~E~~~l~~-~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLAN-DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHh-CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 57999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+|.||+++|.++|+|++||.+||.+|+++|.+|++++|+|.+||++|++| ++|+++||+|+++||..
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999963
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.1e-49 Score=300.89 Aligned_cols=144 Identities=40% Similarity=0.713 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeC
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 114 (182)
+.+||++|+++|++ ++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~Rl~kE~~~l~~-~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLK-DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHh-CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 46999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|.+| ++|.++||+|+++||
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999 999999999999998
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-49 Score=286.06 Aligned_cols=144 Identities=44% Similarity=0.749 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
+.|-|||++|++.|++ +++.||+..|.++|+++|+++|+||.+|||+||+|++.|.|+++||.+||.|+|++++|||||
T Consensus 3 tpArrrLmrDfkrlqe-dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNv 81 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQE-DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNV 81 (152)
T ss_pred chHHHHHHHHHHHhhc-CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCc
Confidence 4678999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 030171 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 177 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~ 177 (182)
|.+|.+|+|+|...|+|.|++..||.+||+||.+|++++|+|.|||++|++| .+|.++|++.+.+
T Consensus 82 ya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 82 YADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred CCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999998765
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-45 Score=270.72 Aligned_cols=143 Identities=37% Similarity=0.614 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
.+..-|+++|++|++ ++..|+++..+++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.++||||||
T Consensus 5 ~a~~ll~~qlk~L~~-~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 5 QASLLLLKQLKELQE-EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred hhHHHHHHHHHHHhc-CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 366789999999999 9999999988755 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccC-------------CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 030171 113 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 177 (182)
Q Consensus 113 ~~~G~icl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~ 177 (182)
|++|++|++||. +.|.|.+|+++||++|.+||.+||.++|+|-|||+.|+++ ++|.++|++++.+
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 999999999994 4699999999999999999999999999999999999999 9999999999865
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-45 Score=266.76 Aligned_cols=159 Identities=62% Similarity=1.014 Sum_probs=150.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCC
Q 030171 18 ASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK 97 (182)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~ 97 (182)
.++++.+.+........+.|||++||-.|+. ...+||+++|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++
T Consensus 13 ~~sk~~a~~m~v~~~~~V~KRLq~ELm~Lmm-s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~ 91 (175)
T KOG0421|consen 13 NGSKQSAAPMAVVDGHSVTKRLQSELMGLMM-SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYK 91 (175)
T ss_pred CcccCCCCCcccccCchHHHHHHHHHHHHHh-cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCC
Confidence 4556666666777789999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred CCeeeEeccccccceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHH
Q 030171 98 PPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYF 176 (182)
Q Consensus 98 pP~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~ 176 (182)
||.|+|+|++||||||..|.||+|||++.|+..|.++.||++||+||-+||.++|+|..||+++. | ++|++.+.+..+
T Consensus 92 pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~ 170 (175)
T KOG0421|consen 92 PPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYK 170 (175)
T ss_pred CCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 6 999999999887
Q ss_pred hh
Q 030171 177 AG 178 (182)
Q Consensus 177 ~~ 178 (182)
+.
T Consensus 171 ~~ 172 (175)
T KOG0421|consen 171 EI 172 (175)
T ss_pred cc
Confidence 64
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=260.31 Aligned_cols=147 Identities=37% Similarity=0.576 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~-----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (182)
..++.||+.|-+.+.+ +.+-|+++.|.. .|+..|.|.|.|+++|+||||.|.+.+.||++||++||+++|.++.
T Consensus 3 ~~~~~rl~eErk~wrk-~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 3 GIALNRLAEERKKWRK-DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred chHHHHHHHHHHHHhh-cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 4568999999999999 999999998873 3799999999999999999999999999999999999999999999
Q ss_pred cccceeCCCcEEeeccCCc--cCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 108 FHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 108 ~HPnV~~~G~icl~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
||||||++|.|||++|.++ |+|+.||.+||..||.||.+||..+|+|.||..+|.+| .+|+++||.++++||-
T Consensus 82 ~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred cCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999765 99999999999999999999999999999999999999 9999999999999984
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-44 Score=272.26 Aligned_cols=146 Identities=34% Similarity=0.573 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 35 VTQRLQKELMSLMMSGG---DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~---~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+.+||++|++++.+ ++ ..||.+...++|+.+..+.|.||+|||||||.|.+.|++|++|||+||+|+|.|+|||||
T Consensus 4 ~~~ri~~e~k~v~~-~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn 82 (200)
T KOG0418|consen 4 AFKRINREQKEVLD-DPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN 82 (200)
T ss_pred HHHHHHHHHHHhcc-ChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence 78999999999998 76 689999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 112 VDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 112 V~~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
|.+ +|.||+|+|++.|.+++|++.+|++||++|+.|++.+|.+.++|+.|.++ +.|.+.||.|+..||-.
T Consensus 83 VSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 83 VSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 999 99999999999999999999999999999999999999999999999999 99999999999999853
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.5e-43 Score=265.34 Aligned_cols=137 Identities=51% Similarity=0.864 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeCCC
Q 030171 38 RLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116 (182)
Q Consensus 38 RL~~El~~l~~~~~~~gi~~~~~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G 116 (182)
||++||++|++ +++.|+.+.+.++ |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.+|
T Consensus 1 Rl~~E~~~l~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQK-NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHH-SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred CHHHHHHHHhh-CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence 99999999999 9999999999886 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeeccCC-ccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 030171 117 NICLDILQD-KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY 175 (182)
Q Consensus 117 ~icl~~l~~-~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~ 175 (182)
.||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++| ++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 599999999999999999999999999999999999999 99999999983
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.2e-42 Score=262.15 Aligned_cols=138 Identities=51% Similarity=0.880 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeCCC
Q 030171 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116 (182)
Q Consensus 37 kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G 116 (182)
|||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+.+|
T Consensus 2 ~Rl~~E~~~l~~-~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKK-DPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHh-CCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 799999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeeccCCc-cCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHH
Q 030171 117 NICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQY 175 (182)
Q Consensus 117 ~icl~~l~~~-W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~ 175 (182)
.||+++|... |+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++| ++|+++||+|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999876 99999999999999999999999999999999999999 99999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=5.8e-42 Score=259.43 Aligned_cols=142 Identities=52% Similarity=0.875 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeCC
Q 030171 37 QRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 115 (182)
Q Consensus 37 kRL~~El~~l~~~~~~~gi~~~~~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 115 (182)
+||++|++++++ +.++|+.+.+.++ |+.+|+++|.||++|||+||.|+|.|.||++||++||+|+|.+++|||||+++
T Consensus 1 ~Rl~~E~~~~~~-~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLK-DPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHh-CCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence 599999999999 9999999988865 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeeccC-CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 116 GNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 116 G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
|.||+++|. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+++|+++ ++|.++|+++++||+
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 8999999999999999999999999999999999999999 999999999999985
No 13
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-42 Score=249.94 Aligned_cols=144 Identities=34% Similarity=0.646 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
..++|||++||++|-. ++++||.+.|. ++|+++|.+.|.||++|+|+||+|..++.||.|||.+||+++|...+||||
T Consensus 3 ~~AlkRLm~EykqLt~-~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN 81 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTL-NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN 81 (165)
T ss_pred hhHHHHHHHHHHHHcc-CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence 4689999999999999 99999999887 789999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeeccC-------------CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 030171 112 VDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 177 (182)
Q Consensus 112 V~~~G~icl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~ 177 (182)
|+.+|+||+++|. +.|+|.++++.||+++.+||.+||.++++|.+|+.++++| ++|.+.||..+.|
T Consensus 82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999993 5799999999999999999999999999999999999999 9999999999876
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-39 Score=233.58 Aligned_cols=145 Identities=28% Similarity=0.553 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeE-EEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVS-AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~-~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
.+.+||.+||.+|++ +....+. +...+.|++.|++.|. |++-||..|.|++.|.||.+|||+||+|.|.|+||||||
T Consensus 2 ~a~~Rl~kEL~dl~~-~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV 79 (153)
T KOG0422|consen 2 AAPRRLRKELADLQK-NKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV 79 (153)
T ss_pred chhHHHHHHHHHHHh-ccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence 367999999999999 7776553 4445789999999999 999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccC-CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 113 DQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 113 ~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
|+.|.+|+.++. ++|+|+..+++||+.|..++.+|+++.|++.|+|..|.+| ..|.++|.++++||+-
T Consensus 80 De~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 80 DEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 999999999984 8999999999999999999999999999999999999999 9999999999999974
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=240.49 Aligned_cols=143 Identities=32% Similarity=0.596 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeC
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 114 (182)
.-|||..|+..|.. .+..|...++++.+++|.+.||.+|||+||++++++.+|++||++.|.|.|+++||||||++
T Consensus 4 ~~rRid~Dv~KL~~----s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM----SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred cccchhhHHHHHHh----cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 45899999988876 23456767888999999999999999999999999999999999999999999999999999
Q ss_pred -CCcEEeeccCCccCCccCHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 115 -YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 115 -~G~icl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+|.|||+.+.+.|+|.+.+..|+.. |-.||..||+.||+|.|||.+|.++ ++|+++||++++|||.+
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999866 5788999999999999999999999 99999999999999986
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-38 Score=236.10 Aligned_cols=150 Identities=31% Similarity=0.595 Sum_probs=133.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCCeEEE-ec-CCCCc--eEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeE
Q 030171 28 NTVDTTSVTQRLQKELMSLMMSGGDLGVSAF-PE-GESIF--TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKF 103 (182)
Q Consensus 28 ~~~~~~~~~kRL~~El~~l~~~~~~~gi~~~-~~-~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 103 (182)
...+.+.+.-||++|+.++.- ++++++. +. .++++ ++.++|. |+++.|.||.|+|.+.+|+.||+.||+|+|
T Consensus 22 ~~~~~s~a~lrl~~di~elnL---p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkC 97 (184)
T KOG0420|consen 22 TRKKVSAALLRLKKDILELNL---PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKC 97 (184)
T ss_pred ccccccHHHHHHHhhhhhccC---CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeee
Confidence 344455678899999888854 6666532 12 34444 5999999 999999999999999999999999999999
Q ss_pred eccccccceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 104 ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 104 ~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+|++|||||+.+|.|||+||+++|+|+.+|.+|+.+|+.||.+|+++||+|.|||.++++| +.|+.+||+.++.|+.+
T Consensus 98 ltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 98 LTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVG 176 (184)
T ss_pred eeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999988754
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=228.72 Aligned_cols=148 Identities=33% Similarity=0.523 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
.-.+|.|.+|++.|.. .++.||.|.+.++|+....+.|.||.||||++|+|+..+.+..|||.+||+-.|+|+||||||
T Consensus 9 p~vik~~~kEl~~l~~-~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNV 87 (223)
T KOG0423|consen 9 PNVIKQLAKELKSLDE-SPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNV 87 (223)
T ss_pred hHHHHHHHHHHHhccc-CCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCc
Confidence 3578999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
..+|.||++.|+.+|+|.++|.+||..|+.||..|++++.+|.+|.+++.++ ++|.+.||-++.-||..
T Consensus 88 aaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 88 AANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred ccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999 99999999999888753
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-31 Score=192.66 Aligned_cols=120 Identities=36% Similarity=0.635 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc-cccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM-CFHP 110 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-i~HP 110 (182)
+..+.+||+|||.+++. +++.|+... +.+|+..|.+.+.|.+||.|+|.+|.+++.||+.||+..|.|.|+.+ ..||
T Consensus 13 s~~at~RLqKEl~e~q~-~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQN-NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 56789999999999999 999999887 78999999999999999999999999999999999999999999987 5799
Q ss_pred ceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCC-CCCCCcc
Q 030171 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE-PNPESPL 153 (182)
Q Consensus 111 nV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~-p~~~~p~ 153 (182)
+|+.||.|||++|.++|+|++++.+|+++|.+||+. +....|.
T Consensus 91 HiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 91 HIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred ceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 999999999999999999999999999999999984 4444554
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-28 Score=189.98 Aligned_cols=111 Identities=32% Similarity=0.557 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc--cc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CF 108 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 108 (182)
++..+.|||+|||+.|.+ ++.++|.+.|..+|+.+||.+|.||++|||+||.|+.+|.||.+||++||.|+++|+ .|
T Consensus 2 a~k~a~kRl~keY~~l~k-~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCK-DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred cchHHHHHHHHHHHHHHh-CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 456799999999999999 999999999999999999999999999999999999999999999999999999997 45
Q ss_pred ccceeCCCcEEeeccC---CccCCccCHHHHHHHHHHhhCC
Q 030171 109 HPNVDQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLGE 146 (182)
Q Consensus 109 HPnV~~~G~icl~~l~---~~W~p~~~i~~iL~~i~~ll~~ 146 (182)
.+ +-++||++.. +.|+|+++|.+||.+|.++|.+
T Consensus 81 kt----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 81 KT----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTE 117 (244)
T ss_pred ec----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhc
Confidence 44 4699998874 8899999999999999999974
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=169.56 Aligned_cols=145 Identities=21% Similarity=0.355 Sum_probs=131.2
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCC--CCCeeeEecccc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF--KPPQVKFETMCF 108 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~ 108 (182)
..-.....|..||..+.+ .+.+||+|.|+-.|-..|.++|++. .++|.||+|+|.|.+|++||. ..|.|.|.+.+|
T Consensus 16 g~i~qey~llAEf~lV~~-ekL~gIyviPSyan~l~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vf 93 (258)
T KOG0429|consen 16 GNILQEYALLAEFVLVCR-EKLDGIYVIPSYANKLLWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVF 93 (258)
T ss_pred hHHHHHHHHHHHHHHHHh-ccCCceEEcccccccceEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeecccc
Confidence 334455689999999999 9999999999999999999999955 458999999999999999995 689999999999
Q ss_pred ccceeC-CCcEEeeccCCccCCc-cCHHHHHHHHHHhhCCCCCCCc--ccHHHHHHhhch-HHHHHHHHHHHHh
Q 030171 109 HPNVDQ-YGNICLDILQDKWSSA-YDCRTILLSIQSLLGEPNPESP--LNSYAAALLNNK-EDYRKMVQKQYFA 177 (182)
Q Consensus 109 HPnV~~-~G~icl~~l~~~W~p~-~~i~~iL~~i~~ll~~p~~~~p--~N~ea~~~~~~~-~~f~~~~~~~~~~ 177 (182)
||+|.+ ++.+|+......|+-. .+|++||..||.+|.+|+..-+ .|+||+.+|+++ ++|+++|+++++.
T Consensus 94 HP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 94 HPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999 9999999888789755 5899999999999999998765 599999999999 9999999999874
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.5e-21 Score=155.49 Aligned_cols=112 Identities=30% Similarity=0.515 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
..+.|||++|.++|+ ++...+...|.++|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+-. .+
T Consensus 10 npaVkRlmkEa~El~--~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--RF 85 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK--DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--RF 85 (314)
T ss_pred CHHHHHHHHHHHHhc--CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--ce
Confidence 458899999999998 57777888999999999999999999999999999999999999999999999998744 33
Q ss_pred eCCCcEEeeccC---CccCCccCHHHHHHHHHHhhC-CCC
Q 030171 113 DQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLG-EPN 148 (182)
Q Consensus 113 ~~~G~icl~~l~---~~W~p~~~i~~iL~~i~~ll~-~p~ 148 (182)
..+.+|||++.. +.|.|+++|+..|+.|..+|- .|+
T Consensus 86 E~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 86 EVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 346799999984 789999999999999999886 454
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.2e-18 Score=156.70 Aligned_cols=118 Identities=26% Similarity=0.463 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc--ccccc
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CFHPN 111 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 111 (182)
...+..+.|++-|.. +.+.||.|...++.+..+.++|.|+.+|||..|+|.|.|.||.+||..||.+...+. .++||
T Consensus 851 ~~~~~~~~~~~~~~~-~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPL-SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHhhhc-cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 566677778888888 889999999999999999999999999999999999999999999999999999985 78999
Q ss_pred eeCCCcEEeeccC-------CccCCccCHHHHHHHHHHhhC--CCCCCCc
Q 030171 112 VDQYGNICLDILQ-------DKWSSAYDCRTILLSIQSLLG--EPNPESP 152 (182)
Q Consensus 112 V~~~G~icl~~l~-------~~W~p~~~i~~iL~~i~~ll~--~p~~~~p 152 (182)
.|+.|+||+++|. +.|+|+-+|.+||.+||.|+- +|.++.+
T Consensus 930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 9999999999994 569999999999999999986 5655443
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-15 Score=141.51 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc---cc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM---CF 108 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~ 108 (182)
+....+|+++|++-+.+ +.+.|+.+.+.+......++.|.|+.+|||++|+|.|.|.||..||..||.+.+.+. .+
T Consensus 280 s~~~skrv~ke~~llsk-dlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~ 358 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSK-DLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL 358 (1101)
T ss_pred chhhHHHHHHHhhhhcc-cCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence 44578899999999999 999999999999999999999999999999999999999999999999999999986 78
Q ss_pred ccceeCCCcEEeeccC-------CccCCc-cCHHHHHHHHHHhhCC
Q 030171 109 HPNVDQYGNICLDILQ-------DKWSSA-YDCRTILLSIQSLLGE 146 (182)
Q Consensus 109 HPnV~~~G~icl~~l~-------~~W~p~-~~i~~iL~~i~~ll~~ 146 (182)
.||.|.+|+||+++|. +.|+|. .++.++|.+||.++.+
T Consensus 359 nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 359 NPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred cCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 9999999999999983 679999 7999999999999973
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-13 Score=100.85 Aligned_cols=111 Identities=29% Similarity=0.377 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecC-CC--CceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEG-ES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~-~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+.-||.+|+.+-+++..+..++.-..+ +| +..|...|.||+.|+||+-+|.++|.+.++||..||+|+|.+++--+.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 345788888877763344444544433 33 568999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEeecc--CCccCCccCHHHHHHHHHHhhC
Q 030171 112 VDQ-YGNICLDIL--QDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 112 V~~-~G~icl~~l--~~~W~p~~~i~~iL~~i~~ll~ 145 (182)
|+. +|.+.-..+ -.+|+-.+++..+|..++.+|.
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 988 777765333 2699999999999999987665
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.8e-09 Score=73.90 Aligned_cols=92 Identities=25% Similarity=0.445 Sum_probs=71.8
Q ss_pred EEEEEEEcCCCCCCCCCeeeEecccc-ccceeCCCcEEeeccC-CccCCccCHHHHHHHHHHhhCCCCC--CCcccHHHH
Q 030171 83 SYKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNP--ESPLNSYAA 158 (182)
Q Consensus 83 ~f~~~i~fp~~YP~~pP~v~f~t~i~-HPnV~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~--~~p~N~ea~ 158 (182)
..-+.+.|+++||+.||.+|...|+. ..-|-.+|.||+.+|. ++|+.+++|+.++.+|-.++..... ..+++.+-.
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh
Confidence 34577889999999999999887744 3445559999999995 7899999999999999999986553 556666554
Q ss_pred HHhhch---HHHHHHHHHHH
Q 030171 159 ALLNNK---EDYRKMVQKQY 175 (182)
Q Consensus 159 ~~~~~~---~~f~~~~~~~~ 175 (182)
+|... +.|+..++.+-
T Consensus 92 -~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 -LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred -HhhHHHHHHHHHHHHHHHH
Confidence 55433 78888888774
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.64 E-value=1.1e-07 Score=70.94 Aligned_cols=67 Identities=31% Similarity=0.607 Sum_probs=61.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeEeccc---cccceeCCCcEEe---eccCCccCCccCHHHHHHHHHHhhCC
Q 030171 80 EGLSYKLSLRFPLDYPFKPPQVKFETMC---FHPNVDQYGNICL---DILQDKWSSAYDCRTILLSIQSLLGE 146 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~G~icl---~~l~~~W~p~~~i~~iL~~i~~ll~~ 146 (182)
.|+.+.++|.||++||..||.|....+. +-|||+.+|.+|+ ...-+.|.|...+.++|...+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6899999999999 77778999999999999999999983
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.37 E-value=2.7e-06 Score=62.50 Aligned_cols=84 Identities=21% Similarity=0.460 Sum_probs=56.7
Q ss_pred CCCCceEEEEEecCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeEeccc-----cccceeCCCcEEeeccCCccCC-ccC
Q 030171 61 GESIFTWIGTIEGGKGTMYEGLSYK--LSLRFPLDYPFKPPQVKFETMC-----FHPNVDQYGNICLDILQDKWSS-AYD 132 (182)
Q Consensus 61 ~~n~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~G~icl~~l~~~W~p-~~~ 132 (182)
++.-.+--+.+.|--.-.|.|..|. +.|-+|.+||..||.+...... -+.+|+.+|+|.+..|. +|.+ ..+
T Consensus 25 ~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~ 103 (121)
T PF05743_consen 25 NDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSN 103 (121)
T ss_dssp TTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-
T ss_pred CCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCC
Confidence 4433444445555333358888885 5666899999999999887532 24499999999999885 8987 779
Q ss_pred HHHHHHHHHHhhC
Q 030171 133 CRTILLSIQSLLG 145 (182)
Q Consensus 133 i~~iL~~i~~ll~ 145 (182)
+.+++..+...|.
T Consensus 104 L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 104 LVDLVQELQAVFS 116 (121)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998887
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.36 E-value=3.2e-07 Score=68.26 Aligned_cols=97 Identities=23% Similarity=0.405 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCE----------EEEEEEcCCCCCCCC
Q 030171 29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLS----------YKLSLRFPLDYPFKP 98 (182)
Q Consensus 29 ~~~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~p 98 (182)
+.+......||+.||+.|.+ ++....++-..|.-.=..+.||-|.|.+ |.+++.+|..||..|
T Consensus 19 Prd~~~W~~RLKEEy~aLI~-------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~ 91 (161)
T PF08694_consen 19 PRDGDLWVQRLKEEYQALIK-------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTA 91 (161)
T ss_dssp TTSCHHHHHHHHHHHHHHHH-------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS-
T ss_pred CCCHHHHHHHHHHHHHHHHH-------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCC
Confidence 34447789999999999877 4444433444554333446677666654 556777899999999
Q ss_pred CeeeEec------cccccceeCCCcEEeeccC-Ccc---CCccCHHHHH
Q 030171 99 PQVKFET------MCFHPNVDQYGNICLDILQ-DKW---SSAYDCRTIL 137 (182)
Q Consensus 99 P~v~f~t------~i~HPnV~~~G~icl~~l~-~~W---~p~~~i~~iL 137 (182)
|.|.... ++|+ .|+||++.-. .-| .|.++|.+.|
T Consensus 92 pEi~lPeLdGKTaKMYR-----GGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 92 PEIALPELDGKTAKMYR-----GGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp ---B-GGGTTT-SSBCC-----CCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred cceeccccCCchhhhhc-----CceEeeecccchhhhhcCCchhHHHHH
Confidence 9998764 4554 8999998763 456 4778887765
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=3.1e-05 Score=56.90 Aligned_cols=104 Identities=19% Similarity=0.384 Sum_probs=71.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCE----------EEEEEEcCCCCCC
Q 030171 27 PNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLS----------YKLSLRFPLDYPF 96 (182)
Q Consensus 27 ~~~~~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~ 96 (182)
..+.......+||+.||+.|.. +++-..++-..|.-.-..+.||-|-|.+ |.+++.+|-.||.
T Consensus 20 agprd~~~wvqrlkeey~sli~-------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~ 92 (167)
T KOG3357|consen 20 AGPRDGDLWVQRLKEEYQSLIA-------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPT 92 (167)
T ss_pred CCCccchHHHHHHHHHHHHHHH-------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCC
Confidence 3445566789999999999987 5554555555665555668889888865 5566777999999
Q ss_pred CCCeeeEecccc-ccceeCCCcEEee-ccCCccC---CccCHHHHH
Q 030171 97 KPPQVKFETMCF-HPNVDQYGNICLD-ILQDKWS---SAYDCRTIL 137 (182)
Q Consensus 97 ~pP~v~f~t~i~-HPnV~~~G~icl~-~l~~~W~---p~~~i~~iL 137 (182)
.+|.|....--. .--.+..|.||+. ..+.-|. |..+|.+.+
T Consensus 93 tapeialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 93 TAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CCccccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 999987653100 1122348999985 4456673 666776654
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00036 Score=59.01 Aligned_cols=112 Identities=19% Similarity=0.318 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEE--EcCCCCCCCCCeeeEecc-----
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSL--RFPLDYPFKPPQVKFETM----- 106 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i--~fp~~YP~~pP~v~f~t~----- 106 (182)
.+.+.+...+.......+..-..+.. |.-..--..+.|---.+|.|.+|.+=| =+.+.||..||.+.....
T Consensus 20 ~~~~~~l~lls~~~sL~P~t~tf~~~--Dg~s~~ll~~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~i 97 (365)
T KOG2391|consen 20 LTRQDLLNLLSSFKSLRPKTDTFTHN--DGRSRLLLQLDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMII 97 (365)
T ss_pred hHHHHHHHHHHhccccCcccceEEec--CCCccchhhccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhh
Confidence 34445555555554411222223332 322222233455445689998887554 479999999999877642
Q ss_pred ccccceeCCCcEEeeccCCccC-CccCHHHHHHHHHHhhCCCC
Q 030171 107 CFHPNVDQYGNICLDILQDKWS-SAYDCRTILLSIQSLLGEPN 148 (182)
Q Consensus 107 i~HPnV~~~G~icl~~l~~~W~-p~~~i~~iL~~i~~ll~~p~ 148 (182)
-.|-+|+.+|.|.|..|. +|. |+..+..++..|...|.++.
T Consensus 98 k~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 98 KVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred HHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCC
Confidence 238999999999999996 897 55689999999999997543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.46 E-value=0.011 Score=41.72 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEec--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 37 kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
.+...|+..|+. .-+..+ ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|.+.....
T Consensus 4 e~~~~EieaL~s-Iy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~ 75 (113)
T PF05773_consen 4 EQQEEEIEALQS-IYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKN 75 (113)
T ss_dssp HHHHHHHHHHHH-HSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESS
T ss_pred HHHHHHHHHHHH-HcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCC
Confidence 467788888887 544444 22223445566666632 23334456689999999999999999998776543
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.40 E-value=0.038 Score=40.58 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCeEEEecCCCCceEEEEEec--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeCCCcE--Eeecc-----
Q 030171 53 LGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI--CLDIL----- 123 (182)
Q Consensus 53 ~gi~~~~~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~i--cl~~l----- 123 (182)
.|+..+.+.+.-..|.+ |.| -+.++|.+..-.+-|.+|..||..+|.+.+..+-.... ..|.| |-+..
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 46667766666666755 666 55667999999999999999999999887776533211 12233 32211
Q ss_pred ---------CCccCCcc-CHHHHHHHHHHhhC
Q 030171 124 ---------QDKWSSAY-DCRTILLSIQSLLG 145 (182)
Q Consensus 124 ---------~~~W~p~~-~i~~iL~~i~~ll~ 145 (182)
...|.|.. +|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 24688877 78888888877664
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.90 E-value=0.058 Score=37.64 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=22.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeEec
Q 030171 80 EGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
..-.+.+.+.||++||..+|.|.+..
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568999999999999999998765
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.41 E-value=0.028 Score=43.34 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=49.9
Q ss_pred EEEEEcCCCCCCCCCeeeEecccc---ccceeCC-----CcEEeeccC-CccCCccCHHHHHHHHHHhhC
Q 030171 85 KLSLRFPLDYPFKPPQVKFETMCF---HPNVDQY-----GNICLDILQ-DKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 85 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~-----G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~ 145 (182)
.+.|.|+.+||..+|.|.+..+.| +||++.. ..+|+.--. ..|.+..++..+|..|...|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 356899999999999888776543 5888776 789986543 579999999999999999885
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=85.55 E-value=2 Score=36.26 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
.....+|.+|+.++.. +.. +.+. .++++....+.+... .-...++|.++.+||.++|.+...-++ .
T Consensus 98 ~~~ys~ll~EIe~IGW-~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-~--- 163 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGW-DKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-P--- 163 (291)
T ss_dssp -GGC-CHHHHHHHHHC-GCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS-----
T ss_pred cHHHHHHHHHHHHhcc-ccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc-c---
Confidence 3456789999998876 332 2221 368888888888722 257889999999999999976433221 1
Q ss_pred eCCCcEEeeccCCccCC-ccCHHHHHHHHHHhh
Q 030171 113 DQYGNICLDILQDKWSS-AYDCRTILLSIQSLL 144 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p-~~~i~~iL~~i~~ll 144 (182)
+...|.+ ..++.+++...+..+
T Consensus 164 ----------~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 164 ----------FSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ----------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred ----------hhhhhcccccCHHHHHHHHHHHH
Confidence 1136777 567777666655554
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.65 E-value=5.5 Score=37.84 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCC-CCeeeEecc
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFK-PPQVKFETM 106 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~-pP~v~f~t~ 106 (182)
..+-|..|+.-|-. ..+.+.++..+-.-..-.+.+.||-----.....++.|.||.+||.+ +|++.|..+
T Consensus 421 ~pQnLgeE~S~Ig~--k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGV--KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhc--cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 45567777776643 44555555444444566777776543322224458899999999995 789998853
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=81.67 E-value=2.1 Score=33.20 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=27.7
Q ss_pred ccccc---cceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCc
Q 030171 105 TMCFH---PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152 (182)
Q Consensus 105 t~i~H---PnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p 152 (182)
|+.|| +||+.+|.||+.... .|.......+..+...|.+-...++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 34555 599999999997643 3444445557777655553333343
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.94 E-value=7 Score=31.41 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCCe-EEEecCCCCceEEEEEecCCCC--CCCCCEEEEEEEcCCCCCCCCCeee
Q 030171 39 LQKELMSLMMSGGDLGV-SAFPEGESIFTWIGTIEGGKGT--MYEGLSYKLSLRFPLDYPFKPPQVK 102 (182)
Q Consensus 39 L~~El~~l~~~~~~~gi-~~~~~~~n~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~ 102 (182)
...|+..|.. ..+.-+ .+. +.++..+.+.|.-..+. -|.| .+.+.+.++++||..+|.|.
T Consensus 7 Qe~E~EaLeS-IY~de~~~i~--~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 7 QEEELEALES-IYPDEFKHIN--SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred HHHHHHHHHH-hccchhhhhh--ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCccee
Confidence 3456666666 444333 222 22333355666522211 1222 78899999999999999993
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=67.73 E-value=15 Score=31.61 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=45.4
Q ss_pred CceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEe-ccccccceeCCCcEEeeccCCccCCcc--CHHHHHHHH
Q 030171 64 IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE-TMCFHPNVDQYGNICLDILQDKWSSAY--DCRTILLSI 140 (182)
Q Consensus 64 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnV~~~G~icl~~l~~~W~p~~--~i~~iL~~i 140 (182)
...+.+.| ||.|...+-+|.|...||..||-+.|. ..-|+|.... +..| .+|.+.- .+..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHH
Confidence 44566555 599999999999999999999999997 3458884321 1222 3787653 444555444
Q ss_pred H
Q 030171 141 Q 141 (182)
Q Consensus 141 ~ 141 (182)
.
T Consensus 121 ~ 121 (333)
T PF06113_consen 121 R 121 (333)
T ss_pred H
Confidence 4
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=66.28 E-value=9.8 Score=30.98 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=26.8
Q ss_pred cceeCCCcEEeeccCCccCCcc-CHHHHHHHHHHhhCCCCCCCc
Q 030171 110 PNVDQYGNICLDILQDKWSSAY-DCRTILLSIQSLLGEPNPESP 152 (182)
Q Consensus 110 PnV~~~G~icl~~l~~~W~p~~-~i~~iL~~i~~ll~~p~~~~p 152 (182)
+||+.+|+||+.... .|.. ++.+ +......|..-.+.++
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 499999999997664 4554 5666 7787777765444333
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=54.03 E-value=18 Score=27.03 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=22.9
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeeeEec
Q 030171 80 EGLSYKLSLRFPLDYP-FKPPQVKFET 105 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 105 (182)
+.|.|.|.-.+|-.|| .+||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3589999999999999 9999998863
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=50.96 E-value=21 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeEec
Q 030171 80 EGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
+.|.|.|.=.+|--||.++|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998874
No 43
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.91 E-value=16 Score=21.72 Aligned_cols=14 Identities=43% Similarity=0.498 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHh
Q 030171 35 VTQRLQKELMSLMM 48 (182)
Q Consensus 35 ~~kRL~~El~~l~~ 48 (182)
-.+||++|+++|..
T Consensus 20 eNrRL~ke~~eLra 33 (44)
T smart00340 20 ENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHh
Confidence 46899999999987
No 44
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=45.97 E-value=6.8 Score=37.55 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 81 GLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 81 gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
=.+=-++|.+|.|||..+|.+.+.+.-|
T Consensus 713 P~VPPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 713 PSVPPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp ----------------------------
T ss_pred CCCCCeeEeCCCCCCccCCcCcccHHHh
Confidence 3455688999999999999987765433
No 45
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=43.01 E-value=81 Score=21.38 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.8
Q ss_pred ceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 65 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 65 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
+.|.+-+.|+.+.--..-+=++.+.+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988765555677888999999986 7766666655
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=41.85 E-value=37 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeeeEec
Q 030171 81 GLSYKLSLRFPLDYP-----FKPPQVKFET 105 (182)
Q Consensus 81 gg~f~~~i~fp~~YP-----~~pP~v~f~t 105 (182)
.|.|.|.-.+|--|| .+||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998874
No 47
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.43 E-value=14 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.6
Q ss_pred CCcEEeeccCCccCCccCHHHHHHHHHHhhC
Q 030171 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~ 145 (182)
.+.+|++++..-|+|.+|++..+.-++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999887766665554
No 48
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=37.11 E-value=2.9e+02 Score=25.89 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEec----CCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPE----GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~----~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
.++..-.-|++|+..|.. .+.|.++ ++|--.+.|.|. -+.-| -+++.+|.+||..
T Consensus 616 ~rq~lp~vlqgElarLD~-----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq--------- 674 (742)
T KOG4274|consen 616 QRQNLPEVLQGELARLDA-----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQ--------- 674 (742)
T ss_pred hhhhhhHHHHHHHHhhcc-----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeecccccccc---------
Confidence 355566688899988754 4444443 334223334443 22223 4899999999973
Q ss_pred ccccceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCC
Q 030171 107 CFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151 (182)
Q Consensus 107 i~HPnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~ 151 (182)
.+|.+--- .+..++-+.+|=.++++-|+.|...+
T Consensus 675 ----------~~~vdr~~-~y~a~pflq~vq~s~~~RlsrP~~~S 708 (742)
T KOG4274|consen 675 ----------NVTVDRAV-IYLAAPFLQDVQNSVYERLSRPGLSS 708 (742)
T ss_pred ----------chhhhhHH-HhhhcHHHHHHHHHHHHHHccCCcch
Confidence 35543211 12344556667777777777776554
No 49
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=35.84 E-value=74 Score=26.30 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=29.9
Q ss_pred CCceEEEEEecCCCCCCCC---CEEEEEEEcC-----CCCCCCCCeeeEeccccc
Q 030171 63 SIFTWIGTIEGGKGTMYEG---LSYKLSLRFP-----LDYPFKPPQVKFETMCFH 109 (182)
Q Consensus 63 n~~~w~~~i~Gp~~tpy~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 109 (182)
|..-|.+.....+.-.-.| ..|+.++++. .|-||+||+|..+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 4445666665322222222 3466677664 789999999999988653
No 50
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=35.04 E-value=99 Score=20.12 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 139 SIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 139 ~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
.|+.++..-++...+..+|...+.+- +.|...+-+-+.++|-
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556655555677899999999988 9999888877777663
No 51
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=33.59 E-value=96 Score=25.00 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCC-------------------
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDY------------------- 94 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~Y------------------- 94 (182)
++..||...++++++ .+ .+..+-|.+.+....+.-| || |.|.++|.++=
T Consensus 9 s~~eR~~e~~~~~k~-------~L---~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y 76 (235)
T PF14135_consen 9 SPAERINEALAEYKK-------IL---TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSY 76 (235)
T ss_pred CHHHHHHHHHHHHHH-------HH---hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEE
Confidence 456788887777776 11 2334457777773333224 33 77777776443
Q ss_pred CC---CCCeeeEec--cccccceeCC
Q 030171 95 PF---KPPQVKFET--MCFHPNVDQY 115 (182)
Q Consensus 95 P~---~pP~v~f~t--~i~HPnV~~~ 115 (182)
-. .-|.+.|.| +++|-..++.
T Consensus 77 ~~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 77 RLKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred EEecCCceEEEEEeCCceEEEccCCC
Confidence 22 338888887 3678666663
No 52
>PF14282 FlxA: FlxA-like protein
Probab=32.78 E-value=83 Score=22.21 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 030171 28 NTVDTTSVTQRLQKELMSLMM 48 (182)
Q Consensus 28 ~~~~~~~~~kRL~~El~~l~~ 48 (182)
...+....+++|.+.++.|+.
T Consensus 13 s~~~~~~~I~~L~~Qi~~Lq~ 33 (106)
T PF14282_consen 13 SSGSSDSQIEQLQKQIKQLQE 33 (106)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 344446777777777777655
No 53
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.71 E-value=57 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeeEe
Q 030171 80 EGLSYKLSLRFPLDYPF-----KPPQVKFE 104 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 104 (182)
+.|.|.|+-.+|-.||. +||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999998 88888766
No 54
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=31.90 E-value=43 Score=30.93 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeeeEecc
Q 030171 77 TMYEGLSYKLSLRFPLDYPF---KPPQVKFETM 106 (182)
Q Consensus 77 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 106 (182)
+||.=|.|.+ +.+|+.||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4687788887 567999999 6799999997
No 55
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=31.75 E-value=39 Score=27.14 Aligned_cols=56 Identities=25% Similarity=0.450 Sum_probs=43.5
Q ss_pred CCCCeeeEeccccccceeC--CCcEEeeccCCcc--CCccCHHHHHHHHHHhhCCCCCCC
Q 030171 96 FKPPQVKFETMCFHPNVDQ--YGNICLDILQDKW--SSAYDCRTILLSIQSLLGEPNPES 151 (182)
Q Consensus 96 ~~pP~v~f~t~i~HPnV~~--~G~icl~~l~~~W--~p~~~i~~iL~~i~~ll~~p~~~~ 151 (182)
.+||.|.|-.+.|...|+- -|-|--.+...+| -|+..+.+-|..|..+|-.|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4799999999999988877 4544445555667 588899999999999998777543
No 56
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.24 E-value=68 Score=25.17 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.8
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeeEe
Q 030171 81 GLSYKLSLRFPLDYPF-----KPPQVKFE 104 (182)
Q Consensus 81 gg~f~~~i~fp~~YP~-----~pP~v~f~ 104 (182)
.|.|.|.-.+|--||. +||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 77777665
No 57
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=29.62 E-value=71 Score=27.55 Aligned_cols=25 Identities=12% Similarity=0.650 Sum_probs=21.7
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeEec
Q 030171 81 GLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 81 gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
+-.|-++|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3458888999999999999999876
No 58
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=28.57 E-value=44 Score=22.46 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHH
Q 030171 32 TTSVTQRLQKELMSL 46 (182)
Q Consensus 32 ~~~~~kRL~~El~~l 46 (182)
.-+-+|||++||+-|
T Consensus 57 ~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 57 VLSQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCC
Confidence 344678999999865
No 59
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=28.21 E-value=1.2e+02 Score=26.52 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=25.2
Q ss_pred ceeC-CCcEEeeccC---CccCCcc--CHHHHHHHHHHh
Q 030171 111 NVDQ-YGNICLDILQ---DKWSSAY--DCRTILLSIQSL 143 (182)
Q Consensus 111 nV~~-~G~icl~~l~---~~W~p~~--~i~~iL~~i~~l 143 (182)
.|++ +|+||..+=- +...|.. +|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 3445 9999987652 5677665 899999999888
No 60
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=28.07 E-value=71 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.5
Q ss_pred CEEEEEEEcCCCCCCCCCeeeEecc
Q 030171 82 LSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 82 g~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
-++.+.+..++.||...|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5788999999999999999998865
No 61
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=26.91 E-value=1.1e+02 Score=20.53 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=24.5
Q ss_pred CCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 150 ESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 150 ~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
.+|-|.+|-..|+.- ....+..+++.++|+
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999988 888888888877775
No 62
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=26.59 E-value=1.4e+02 Score=20.63 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=20.3
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeeEecc
Q 030171 79 YEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 79 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
-+|..+.|.-.-|..|| .|.|.+...
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888889999 588888854
No 63
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=25.96 E-value=1.8e+02 Score=18.66 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=23.5
Q ss_pred cccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 152 PLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 152 p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
.++.+++..+..+ +.|.+.+-+-+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999 888888877777765
No 64
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.34 E-value=2e+02 Score=22.71 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCe
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQ 100 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~ 100 (182)
...-..+||++|++.+.+ .-...++..|.-+....+.+.++--+++ ..|.++-.+-|+
T Consensus 116 ~~~k~~~~iq~EIraviR-QItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~ 173 (203)
T KOG3285|consen 116 TRVKDLKRIQNEIRAVIR-QITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPK 173 (203)
T ss_pred cchhHHHHHHHHHHHHHH-HHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCe
Confidence 345678999999999999 7677777777777777888888754443 456556555554
No 65
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=24.80 E-value=2e+02 Score=18.67 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 139 SIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 139 ~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
.|+.|+..-++..-+++++..++.+= +.|...|=..+-+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777677788899999888888 999888766654443
No 66
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=23.59 E-value=2.1e+02 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.8
Q ss_pred CEEEEEEEcCCCCCCC
Q 030171 82 LSYKLSLRFPLDYPFK 97 (182)
Q Consensus 82 g~f~~~i~fp~~YP~~ 97 (182)
-...+.+.||.+|+..
T Consensus 209 e~k~i~vtFP~dy~a~ 224 (441)
T COG0544 209 EEKDIKVTFPEDYHAE 224 (441)
T ss_pred CeeEEEEEcccccchh
Confidence 3466889999999983
No 67
>PHA03200 uracil DNA glycosylase; Provisional
Probab=22.67 E-value=94 Score=25.79 Aligned_cols=37 Identities=24% Similarity=0.104 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCCCCCCCEEE-EEEEcCCCCCCCCCeee
Q 030171 63 SIFTWIGTIEGGKGTMYEGLSYK-LSLRFPLDYPFKPPQVK 102 (182)
Q Consensus 63 n~~~w~~~i~Gp~~tpy~gg~f~-~~i~fp~~YP~~pP~v~ 102 (182)
.+....|+|.|-+ ||.||.=+ +-+..+.+++. ||..+
T Consensus 81 p~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~ 118 (255)
T PHA03200 81 SPEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLK 118 (255)
T ss_pred ChhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHH
Confidence 3456799999865 78764422 33455677764 77654
No 68
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=22.51 E-value=84 Score=19.91 Aligned_cols=19 Identities=11% Similarity=0.337 Sum_probs=11.9
Q ss_pred ccCCccCHHHHHHHHHHhh
Q 030171 126 KWSSAYDCRTILLSIQSLL 144 (182)
Q Consensus 126 ~W~p~~~i~~iL~~i~~ll 144 (182)
+|.|.++|.++|...-...
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998765543
No 69
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=22.26 E-value=1.4e+02 Score=22.16 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=20.7
Q ss_pred CCCCceEEEEEecCCCCCCC-CCEEEEEEEc
Q 030171 61 GESIFTWIGTIEGGKGTMYE-GLSYKLSLRF 90 (182)
Q Consensus 61 ~~n~~~w~~~i~Gp~~tpy~-gg~f~~~i~f 90 (182)
..|...|.|++.|++|++.. ...|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 46778899999999988764 3444444443
No 70
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.29 E-value=1.7e+02 Score=24.29 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=37.4
Q ss_pred ccCCccCCccCHHHHHHHHHHhhCC-----CCCC---------CcccHHHHHHhhch----HHHHHHHHHHHHhhh
Q 030171 122 ILQDKWSSAYDCRTILLSIQSLLGE-----PNPE---------SPLNSYAAALLNNK----EDYRKMVQKQYFAGE 179 (182)
Q Consensus 122 ~l~~~W~p~~~i~~iL~~i~~ll~~-----p~~~---------~p~N~ea~~~~~~~----~~f~~~~~~~~~~~a 179 (182)
.|+++|.+...++++...|..+|.. |... .-+++ +.++.++| ..|+++.++.+.+|.
T Consensus 137 flk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~-~~rl~kkDie~L~k~R~~L~~emld~~ 211 (293)
T COG4079 137 FLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDP-VLRLVKKDIETLRKHRRRLAEEMLDHI 211 (293)
T ss_pred HHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999998888888852 2211 11233 77777777 556666666666553
No 71
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=20.01 E-value=71 Score=20.38 Aligned_cols=12 Identities=58% Similarity=0.758 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHh
Q 030171 37 QRLQKELMSLMM 48 (182)
Q Consensus 37 kRL~~El~~l~~ 48 (182)
+||++||+++.-
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 399999998754
Done!