Query 030171
Match_columns 182
No_of_seqs 156 out of 1139
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 9.6E-52 3.3E-56 314.1 19.0 149 32-181 2-151 (151)
2 1zdn_A Ubiquitin-conjugating e 100.0 5.1E-51 1.8E-55 312.3 17.2 148 31-179 10-158 (158)
3 2ayv_A Ubiquitin-conjugating e 100.0 7.6E-51 2.6E-55 313.5 18.2 147 32-179 19-166 (166)
4 1z2u_A Ubiquitin-conjugating e 100.0 8.3E-51 2.8E-55 308.7 17.7 148 32-180 2-150 (150)
5 2c2v_B Ubiquitin-conjugating e 100.0 3.3E-51 1.1E-55 312.1 15.3 146 35-181 6-152 (154)
6 2c4o_A Ubiquitin-conjugating e 100.0 2.8E-50 9.7E-55 310.1 18.9 148 32-180 17-165 (165)
7 2e2c_A Ubiquitin conjugating e 100.0 2.8E-50 9.4E-55 307.6 18.1 146 34-181 9-155 (156)
8 2aak_A UBC1, ubiquitin conjuga 100.0 3E-50 1E-54 306.2 18.0 147 34-181 4-151 (152)
9 1yh2_A HSPC150 protein similar 100.0 5.2E-50 1.8E-54 309.7 19.4 149 32-181 2-155 (169)
10 2r0j_A Ubiquitin carrier prote 100.0 2.2E-50 7.7E-55 306.0 16.7 145 36-181 3-148 (149)
11 1ayz_A UBC2, ubiquitin-conjuga 100.0 3.8E-50 1.3E-54 310.4 18.1 147 34-181 4-151 (169)
12 1i7k_A Ubiquitin-conjugating e 100.0 2.5E-50 8.6E-55 313.8 16.1 148 31-180 27-175 (179)
13 1fxt_A Ubiquitin-conjugating e 100.0 1.8E-50 6.1E-55 306.5 14.5 145 35-180 2-149 (149)
14 1jat_A Ubiquitin-conjugating e 100.0 1.2E-50 4.2E-55 309.3 13.1 146 35-181 6-152 (155)
15 3bzh_A Ubiquitin-conjugating e 100.0 1.7E-49 5.9E-54 312.7 19.4 147 33-180 47-194 (194)
16 3rcz_B SUMO-conjugating enzyme 100.0 1.1E-49 3.7E-54 306.2 17.2 148 31-179 7-162 (163)
17 3h8k_A Ubiquitin-conjugating e 100.0 1.9E-49 6.6E-54 305.2 18.5 145 34-179 3-162 (164)
18 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1E-49 3.4E-54 313.7 16.6 149 32-181 30-193 (193)
19 2ucz_A UBC7, ubiquitin conjuga 100.0 2.8E-49 9.5E-54 304.6 18.4 147 33-180 3-164 (165)
20 2bep_A Ubiquitin-conjugating e 100.0 4.3E-49 1.5E-53 301.9 18.2 147 33-180 7-158 (159)
21 2pwq_A Ubiquitin conjugating e 100.0 2.9E-49 9.9E-54 315.8 16.8 149 32-181 21-171 (216)
22 2gjd_A Ubiquitin-conjugating e 100.0 4.8E-49 1.6E-53 301.0 17.1 146 34-180 4-157 (157)
23 3fn1_B NEDD8-conjugating enzym 100.0 1.3E-48 4.4E-53 301.4 17.2 148 31-180 11-167 (167)
24 2grr_A Ubiquitin-conjugating e 100.0 1.8E-48 6.2E-53 299.0 17.0 147 33-180 6-160 (161)
25 1wzv_A Ubiquitin-conjugating e 100.0 1.5E-48 5E-53 297.7 15.9 146 34-181 4-152 (155)
26 3k9o_A Ubiquitin-conjugating e 100.0 2E-48 6.7E-53 308.5 16.6 147 34-181 5-156 (201)
27 3rz3_A Ubiquitin-conjugating e 100.0 5.3E-48 1.8E-52 302.0 17.4 150 30-180 3-173 (183)
28 3e46_A Ubiquitin-conjugating e 100.0 2.1E-47 7E-52 311.3 18.5 149 32-181 55-208 (253)
29 1tte_A Ubiquitin-conjugating e 100.0 2E-48 6.7E-53 310.8 11.1 147 34-181 2-151 (215)
30 1yrv_A Ubiquitin-conjugating l 100.0 1.8E-47 6.2E-52 295.4 15.7 142 34-177 23-168 (169)
31 2awf_A Ubiquitin-conjugating e 100.0 1.2E-47 4.1E-52 297.2 14.5 143 31-174 14-172 (172)
32 2onu_A Ubiquitin-conjugating e 100.0 3.7E-48 1.3E-52 294.6 9.9 143 35-181 3-148 (152)
33 2y9m_A Ubiquitin-conjugating e 100.0 2.2E-46 7.4E-51 290.2 17.6 148 33-180 5-168 (172)
34 1c4z_D UBCH7, ubiquitin conjug 100.0 1.7E-47 6E-52 291.5 10.9 145 35-181 3-150 (154)
35 2z5d_A Ubiquitin-conjugating e 100.0 2.9E-47 1E-51 296.3 11.9 143 34-181 25-170 (179)
36 1y8x_A Ubiquitin-conjugating e 100.0 2.6E-46 9E-51 286.6 16.7 142 33-178 5-148 (160)
37 2nvu_C NEDD8-conjugating enzym 100.0 5.2E-46 1.8E-50 289.8 16.9 145 30-178 22-168 (180)
38 1yf9_A Ubiquitin carrier prote 100.0 2.9E-46 9.8E-51 289.1 12.2 143 34-181 12-157 (171)
39 4ddg_A Ubiquitin-conjugating e 100.0 2E-45 6.9E-50 317.6 18.3 148 33-181 2-150 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 2.8E-45 9.7E-50 287.9 15.6 148 29-180 24-179 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 6.3E-44 2.2E-48 275.2 10.6 139 34-173 8-164 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 9.6E-42 3.3E-46 285.4 15.8 152 29-181 71-244 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 2.3E-42 7.7E-47 263.6 10.4 131 32-164 19-156 (156)
44 2fo3_A Ubiquitin-conjugating e 100.0 1.2E-41 4E-46 251.0 13.8 120 31-151 3-123 (125)
45 2h2y_A Ubiquitin-conjugating e 100.0 6.3E-41 2.2E-45 250.4 16.8 118 31-149 17-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 7.3E-41 2.5E-45 256.0 13.2 126 32-158 23-156 (160)
47 1jat_B Ubiquitin-conjugating e 100.0 7.3E-42 2.5E-46 256.1 6.5 128 32-161 4-138 (138)
48 2hlw_A Ubiquitin-conjugating e 100.0 5.2E-41 1.8E-45 259.3 11.3 152 6-158 4-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 7.7E-40 2.6E-44 244.4 11.2 109 36-145 24-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 6.1E-39 2.1E-43 251.3 15.1 137 31-170 11-154 (187)
51 1zuo_A Hypothetical protein LO 100.0 2.4E-39 8.2E-44 253.3 4.4 145 26-179 19-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.9E-28 6.4E-33 185.8 4.2 124 24-162 22-160 (172)
53 3r3q_A Suppressor protein STP2 99.8 6.2E-20 2.1E-24 139.9 10.1 114 37-151 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 2.3E-20 7.7E-25 138.6 2.7 103 28-137 28-145 (168)
55 3obq_A Tumor susceptibility ge 99.5 3.1E-14 1.1E-18 106.6 9.9 101 39-145 25-137 (146)
56 2ebm_A RWD domain-containing p 96.8 0.0078 2.7E-07 43.0 8.4 68 35-105 11-78 (128)
57 2day_A Ring finger protein 25; 96.0 0.046 1.6E-06 38.8 8.8 67 38-105 12-82 (128)
58 2daw_A RWD domain containing p 95.9 0.18 6.3E-06 37.1 11.8 67 34-105 14-98 (154)
59 2yz0_A Serine/threonine-protei 95.8 0.1 3.5E-06 37.5 10.1 70 34-105 10-85 (138)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.3 0.11 3.7E-06 37.2 8.6 69 34-104 10-85 (137)
61 2ebk_A RWD domain-containing p 94.2 0.12 4E-06 36.7 6.2 65 38-104 11-78 (128)
62 3zqs_A E3 ubiquitin-protein li 94.0 0.63 2.1E-05 35.6 10.3 80 38-145 5-87 (186)
63 2dax_A Protein C21ORF6; RWD do 89.0 0.28 9.7E-06 35.9 3.1 24 83-106 74-97 (152)
64 2cwb_A Chimera of immunoglobul 71.4 0.82 2.8E-05 31.9 0.0 32 148-179 22-54 (108)
65 3u3c_B Paxillin LD2 peptide; 4 51.2 15 0.00052 18.1 2.5 21 34-55 5-25 (26)
66 2bum_A Protocatechuate 3,4-dio 30.6 41 0.0014 25.8 3.4 26 80-105 109-139 (209)
67 2jrw_A Cyclic extended PEP.1; 30.2 21 0.00071 17.6 1.0 17 95-111 4-20 (26)
68 3rls_A YAF9, protein AF-9 homo 29.1 1.3E+02 0.0043 22.5 5.7 45 62-108 30-74 (175)
69 3qrl_A Transcription initiatio 27.1 1.6E+02 0.0055 21.1 5.8 43 64-108 32-77 (140)
70 2rf4_B DNA-directed RNA polyme 23.8 38 0.0013 22.3 1.8 15 32-46 60-74 (87)
71 2j3t_C Trafficking protein par 20.5 1.3E+02 0.0044 21.3 4.3 41 131-180 91-139 (145)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=9.6e-52 Score=314.15 Aligned_cols=149 Identities=38% Similarity=0.684 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+..+.+||++||++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++||||
T Consensus 2 a~~a~~RL~kEl~~l~~-~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 80 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQ-DPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN 80 (151)
T ss_dssp CHHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence 45789999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 112 V~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
|+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+|+++||++
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 81 INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred ECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999974
No 2
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.1e-51 Score=312.26 Aligned_cols=148 Identities=34% Similarity=0.550 Sum_probs=144.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+..+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||
T Consensus 10 ~s~~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 88 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTA-DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHP 88 (158)
T ss_dssp SCHHHHHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred cCHHHHHHHHHHHHHHHh-CCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccC
Confidence 445789999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 111 nV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+|+++||
T Consensus 89 nv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 89 NVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999 999999999999998
No 3
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=7.6e-51 Score=313.50 Aligned_cols=147 Identities=39% Similarity=0.689 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
...+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||||
T Consensus 19 ~~~~~~RL~kEl~~l~~-~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 97 (166)
T 2ayv_A 19 FQGALKRINKELNDLSK-DPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPN 97 (166)
T ss_dssp CTTHHHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred CcHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCc
Confidence 34588999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 112 V~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
|+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+++++||
T Consensus 98 I~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 98 INSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999 999999999999997
No 4
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=8.3e-51 Score=308.66 Aligned_cols=148 Identities=39% Similarity=0.693 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+..+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||||
T Consensus 2 s~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGR-DPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 80 (150)
T ss_dssp CCHHHHHHHHHHHHHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence 34688999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 112 V~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
|+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+++++||+
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999995
No 5
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-51 Score=312.15 Aligned_cols=146 Identities=36% Similarity=0.600 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeC
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 114 (182)
+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.
T Consensus 6 ~~~RL~kEl~~l~~-~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (154)
T 2c2v_B 6 LPRRIIKETQRLLA-EPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 84 (154)
T ss_dssp CCHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHh-CCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc
Confidence 45999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp TCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999975
No 6
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=2.8e-50 Score=310.06 Aligned_cols=148 Identities=39% Similarity=0.700 Sum_probs=144.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
...+.+||++||++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||||
T Consensus 17 ~~~~~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn 95 (165)
T 2c4o_A 17 GSMALKRIHKELNDLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 95 (165)
T ss_dssp CHHHHHHHHHHHHHHHS-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred CcHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence 34688999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 112 V~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
|+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+++++||+
T Consensus 96 V~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 96 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999995
No 7
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-50 Score=307.62 Aligned_cols=146 Identities=56% Similarity=1.088 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccee
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 113 (182)
.+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 9 ~~~~RL~kEl~~l~~-~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 9 SVSKRLQQELRTLLM-SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CHHHHHHHHHHHHHH-HCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 478999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++| +| ++|+++||+++++||..
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 88 QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred cCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999 78 99999999999999864
No 8
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=3e-50 Score=306.19 Aligned_cols=147 Identities=41% Similarity=0.694 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccee
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 113 (182)
.+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 4 ~a~~RL~~E~~~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (152)
T 2aak_A 4 PARKRLMRDFKRLQQ-DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY 82 (152)
T ss_dssp HHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCC
Confidence 578999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+++++||.+
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999999 99999999999999975
No 9
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-50 Score=309.74 Aligned_cols=149 Identities=32% Similarity=0.564 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+..+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||||
T Consensus 2 s~~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (169)
T 1yh2_A 2 SMQRASRLKRELHMLAT-EPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN 80 (169)
T ss_dssp CHHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence 35788999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeeccC----CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 112 VDQYGNICLDILQ----DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 112 V~~~G~icl~~l~----~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
|+.+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+|+++||+.
T Consensus 81 v~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 81 IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 9999999999998 8999999999999999999999999999999999999999 99999999999999975
No 10
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.2e-50 Score=305.97 Aligned_cols=145 Identities=41% Similarity=0.667 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeCC
Q 030171 36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 115 (182)
Q Consensus 36 ~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 115 (182)
.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~RL~kEl~~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 3 PRRITKETQNLAN-EPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHh-CCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 4899999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 116 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 116 G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+++++||+.
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999 99999999999999975
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-50 Score=310.42 Aligned_cols=147 Identities=40% Similarity=0.675 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccee
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 113 (182)
.+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus 4 ~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~ 82 (169)
T 1ayz_A 4 PARRRLMRDFKRMKE-DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY 82 (169)
T ss_dssp HHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCC
Confidence 578999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++||..
T Consensus 83 ~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~ 151 (169)
T 1ayz_A 83 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED 151 (169)
T ss_dssp TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999 99999999999999964
No 12
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-50 Score=313.80 Aligned_cols=148 Identities=58% Similarity=1.002 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+..+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 105 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMM-SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP 105 (179)
T ss_dssp ---CHHHHHHHHHHHHHH-HCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred cChHHHHHHHHHHHHHHh-CCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccC
Confidence 566788999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 111 nV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++| +| ++|.++|++++++++.
T Consensus 106 NV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~ 175 (179)
T 1i7k_A 106 NVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT 175 (179)
T ss_dssp TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred ccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999 88 9999999999999875
No 13
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.8e-50 Score=306.50 Aligned_cols=145 Identities=31% Similarity=0.558 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccee
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 113 (182)
+.+||++||++|++ ++++||++.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus 2 ~~~RL~~El~~l~~-~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 80 (149)
T 1fxt_A 2 RAKRIMKEIQAVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80 (149)
T ss_dssp CHHHHHHHHHHHHH-CGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHh-CCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence 56999999999999 9999999999877 999999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 114 Q-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 114 ~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+|+++||.
T Consensus 81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9 99999999999999999999999999999999999999999999999999 9999999999999985
No 14
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.2e-50 Score=309.26 Aligned_cols=146 Identities=35% Similarity=0.574 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeC
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 114 (182)
+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.
T Consensus 6 ~~~RL~kE~~~l~~-~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 6 LPKRIIKETEKLVS-DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp CCHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHh-CCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 56999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+|+++||.+
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999974
No 15
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.7e-49 Score=312.65 Aligned_cols=147 Identities=37% Similarity=0.637 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
..+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||
T Consensus 47 s~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 125 (194)
T 3bzh_A 47 STSAKRIQKELADITL-DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI 125 (194)
T ss_dssp HHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred cHHHHHHHHHHHHHHh-CCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence 5688999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+|+++||+
T Consensus 126 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 126 NSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999985
No 16
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-49 Score=306.19 Aligned_cols=148 Identities=34% Similarity=0.600 Sum_probs=141.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEec
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
.+..+.+||++||++|++ ++++||++.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|
T Consensus 7 ~~~~~~~RL~kEl~~l~~-~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRR-DHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp --CHHHHHHHHHHHHHHH-SCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CcHHHHHHHHHHHHHHHh-CCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 345789999999999999 9999999999865 9999999999999999999999999999999999999999999
Q ss_pred cccccceeCCCcEEeeccCCc--cCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 106 MCFHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 106 ~i~HPnV~~~G~icl~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
+||||||+.+|.||+++|... |+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+|+++||
T Consensus 86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999764 99999999999999999999999999999999999999 999999999999998
No 17
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.9e-49 Score=305.16 Aligned_cols=145 Identities=34% Similarity=0.605 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
.+.+||++||++|++ ++++||++.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||
T Consensus 3 ~a~~RL~kEl~~l~~-~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 3 TALKRLMAEYKQLTL-NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp HHHHHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 688999999999999 9999999998865 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccC-------------CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 030171 113 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 178 (182)
Q Consensus 113 ~~~G~icl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~ 178 (182)
+.+|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+|+++|++| ++|.++||++++++
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s 161 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999999997 7899999999999999999999999999999999999999 99999999999998
Q ss_pred h
Q 030171 179 E 179 (182)
Q Consensus 179 a 179 (182)
+
T Consensus 162 ~ 162 (164)
T 3h8k_A 162 L 162 (164)
T ss_dssp H
T ss_pred h
Confidence 6
No 18
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1e-49 Score=313.67 Aligned_cols=149 Identities=38% Similarity=0.607 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCC-------------CCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCC
Q 030171 32 TTSVTQRLQKELMSLMMSGGD-------------LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~-------------~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~p 98 (182)
...+.+||++||++|++ +++ .||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++|
T Consensus 30 ~~~a~~RL~kEl~~l~k-~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P 108 (193)
T 2f4z_A 30 TPREQARLLKELADIQQ-LQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 108 (193)
T ss_dssp --CHHHHHHHHHHHHHH-C----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCHHHHHHHHHHHHHHh-CCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence 34578999999999999 766 7999999999999999999999999999999999999999999999
Q ss_pred CeeeEeccccccceeC-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHH
Q 030171 99 PQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYF 176 (182)
Q Consensus 99 P~v~f~t~i~HPnV~~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~ 176 (182)
|+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|++
T Consensus 109 P~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~ 188 (193)
T 2f4z_A 109 PKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE 188 (193)
T ss_dssp CEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999995 99999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhcC
Q 030171 177 AGEFE 181 (182)
Q Consensus 177 ~~a~~ 181 (182)
+||.+
T Consensus 189 ~ya~~ 193 (193)
T 2f4z_A 189 TFAKE 193 (193)
T ss_dssp HHCC-
T ss_pred HHccC
Confidence 99975
No 19
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-49 Score=304.60 Aligned_cols=147 Identities=33% Similarity=0.605 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~-~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+.+.+||++||++|++ ++++||++.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++||||
T Consensus 3 ~~a~~RL~kEl~~l~~-~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 81 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIK-DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN 81 (165)
T ss_dssp HHHHHHHHHHHHHHHH-SCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred hHHHHHHHHHHHHHHh-CCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence 4688999999999999 999999999875 79999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecc-------------CCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 030171 112 VDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 177 (182)
Q Consensus 112 V~~~G~icl~~l-------------~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~ 177 (182)
|+.+|.||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++
T Consensus 82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~ 161 (165)
T 2ucz_A 82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK 161 (165)
T ss_dssp BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999 67899999999999999999999999999999999999999 9999999999999
Q ss_pred hhc
Q 030171 178 GEF 180 (182)
Q Consensus 178 ~a~ 180 (182)
++-
T Consensus 162 ~~~ 164 (165)
T 2ucz_A 162 SLG 164 (165)
T ss_dssp HTT
T ss_pred Hhh
Confidence 874
No 20
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.3e-49 Score=301.88 Aligned_cols=147 Identities=32% Similarity=0.581 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccc
Q 030171 33 TSVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH 109 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~---~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 109 (182)
..+.+||++||++|++ + ++.|+++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus 7 ~~a~~RL~kEl~~l~~-~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 85 (159)
T 2bep_A 7 NIAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred HHHHHHHHHHHHHHHh-cCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCc
Confidence 4688999999999998 5 57899999999999999999999999999999999999999999999999999999999
Q ss_pred cceeC-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 110 PNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 110 PnV~~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
|||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+|+++||.
T Consensus 86 Pni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 86 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp TTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99996 99999999999999999999999999999999999999999999999999 9999999999999995
No 21
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=2.9e-49 Score=315.81 Aligned_cols=149 Identities=36% Similarity=0.641 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
.+.+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||||
T Consensus 21 ~s~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN 99 (216)
T 2pwq_A 21 GSKELLRLQKELKDIEN-ENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN 99 (216)
T ss_dssp SCHHHHHHHHHHHHHHH-SCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cCHHHHHHHHHHHHHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence 44688999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 112 VDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 112 V~~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
|+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++||..
T Consensus 100 I~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 100 ISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp BCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 995 99999999999999999999999999999999999999999999999999 99999999999999974
No 22
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=4.8e-49 Score=301.04 Aligned_cols=146 Identities=35% Similarity=0.564 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~-----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
.+.+||++||++|++ ++++|+++.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|
T Consensus 4 ~a~~RL~kE~~~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (157)
T 2gjd_A 4 LCLQRLQEERKKWRK-DHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82 (157)
T ss_dssp HHHHHHHHHHHHHHH-CCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence 578999999999999 999999998874 48999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCcEEeeccCC--ccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 109 HPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 109 HPnV~~~G~icl~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+++++||+
T Consensus 83 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 83 HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred cCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999999987 799999999999999999999999999999999999999 9999999999999995
No 23
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.3e-48 Score=301.42 Aligned_cols=148 Identities=24% Similarity=0.366 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH 109 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 109 (182)
..+.+.+||++||++|++ ++++||++.+. ++|++.|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus 11 ~~s~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (167)
T 3fn1_B 11 RVSVRDKLLVKEVAELEA-NLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH 88 (167)
T ss_dssp CCCHHHHHHHHHHHHHGG-GSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred chhHHHHHHHHHHHHHHh-CCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence 445799999999999999 99999999865 67899999998 8999999999999999999999999999999999999
Q ss_pred cceeCCCcEEeeccCC------ccCCccCHHHHHHHHHHhhCC-CCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 110 PNVDQYGNICLDILQD------KWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 110 PnV~~~G~icl~~l~~------~W~p~~~i~~iL~~i~~ll~~-p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
|||+.+|.||+++|.. +|+|+++|.+||.+|++||.+ |++++|+|.||+++|++| ++|.++||+|+++||.
T Consensus 89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999975 799999999999999999999 799999999999999999 9999999999999995
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.8e-48 Score=298.96 Aligned_cols=147 Identities=37% Similarity=0.574 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~-----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (182)
..+.+||++|+++|++ ++++|+++.+.. +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++
T Consensus 6 ~~a~~RL~kE~~~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 84 (161)
T 2grr_A 6 GIALSRLAQERKAWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL 84 (161)
T ss_dssp HHHHHHHHHHHHHHHH-SCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred HHHHHHHHHHHHHHHh-CCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCc
Confidence 4688999999999999 999999998863 6899999999999999999999999999999999999999999999
Q ss_pred cccceeCCCcEEeeccCC--ccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 108 FHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 108 ~HPnV~~~G~icl~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
|||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+++++||.
T Consensus 85 ~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 85 FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999986 899999999999999999999999999999999999999 9999999999999995
No 25
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.5e-48 Score=297.74 Aligned_cols=146 Identities=29% Similarity=0.529 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEE-EecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSA-FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~-~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
.+.+||++||++|++ ++++||++ .+.++|+++|+++|. |++|||+||.|+|+|.||++||++||+|+|.|++|||||
T Consensus 4 ~~~~RL~kEl~~l~~-~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 81 (155)
T 1wzv_A 4 MASMRVVKELEDLQK-KPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81 (155)
T ss_dssp -CHHHHHHHHHHHHH-SCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHHh-CCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence 367999999999999 99999999 788899999999999 999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecc-CCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 113 DQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 113 ~~~G~icl~~l-~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+.+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+++++||.+
T Consensus 82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 82 DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp CTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred CCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 89999999999999999999999999999999999999999 99999999999999974
No 26
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2e-48 Score=308.54 Aligned_cols=147 Identities=32% Similarity=0.580 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccc
Q 030171 34 SVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~---~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+.+||++||++|++ + ++.||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||
T Consensus 5 ~a~~Rl~kEl~~l~~-~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 83 (201)
T 3k9o_A 5 IAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 83 (201)
T ss_dssp TTHHHHHHHHHHHHT-CHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHh-CCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccC
Confidence 478999999999998 6 368999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeC-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 111 NVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 111 nV~~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+|+++||..
T Consensus 84 nv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 84 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp TBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9996 99999999999999999999999999999999999999999999999999 99999999999999964
No 27
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=5.3e-48 Score=301.97 Aligned_cols=150 Identities=35% Similarity=0.650 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 30 ~~~~~~~kRL~~El~~l~~~~~~~gi~~~-~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
+++..+.|||++||++|++ +++.||++. +.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|
T Consensus 3 m~~~~a~kRL~kEl~~l~~-~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 81 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQE-EPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW 81 (183)
T ss_dssp --CCHHHHHHHHHHHHHHH-SCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CcchHHHHHHHHHHHHHHh-CCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence 4456789999999999999 999999998 66789999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCcEEeeccC-------------CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc------h-HHHH
Q 030171 109 HPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN------K-EDYR 168 (182)
Q Consensus 109 HPnV~~~G~icl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~------~-~~f~ 168 (182)
||||+.+|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.||+++|++ + ++|.
T Consensus 82 HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~ 161 (183)
T 3rz3_A 82 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT 161 (183)
T ss_dssp CTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence 9999999999999996 789999999999999999999999999999999999998 7 9999
Q ss_pred HHHHHHHHhhhc
Q 030171 169 KMVQKQYFAGEF 180 (182)
Q Consensus 169 ~~~~~~~~~~a~ 180 (182)
++||++++++.-
T Consensus 162 ~~v~~~v~~s~~ 173 (183)
T 3rz3_A 162 DIIRKQVLGTKV 173 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 28
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.1e-47 Score=311.32 Aligned_cols=149 Identities=32% Similarity=0.575 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 32 TTSVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~---~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
+..+.+||++||++|++ + ++.||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||
T Consensus 55 s~~a~~RL~kEl~~l~~-~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 55 ANIAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CHHHHHHHHHHHHHHHH-CHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred cHHHHHHHHHHHHHHHh-CCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 46789999999999998 6 4789999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeC-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 109 HPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 109 HPnV~~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||+|+++||..
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 999996 99999999999999999999999999999999999999999999999999 99999999999999963
No 29
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=2e-48 Score=310.83 Aligned_cols=147 Identities=32% Similarity=0.563 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
++.+||++||++|++ ++++||++.+.++ ++++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||
T Consensus 2 ~a~~RL~kEl~~l~~-~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 2 SRAKRIMKEIQAVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp TTHHHHHHHHHHHHT-TTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred hHHHHHHHHHHHHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 367999999999999 9999999999876 56799999999999999999999999999999999999999999999999
Q ss_pred eC-CCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 113 DQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 113 ~~-~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+|+++||..
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99 99999999999999999999999999999999999999999999999999 99999999999999974
No 30
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-47 Score=295.36 Aligned_cols=142 Identities=33% Similarity=0.650 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce-
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV- 112 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV- 112 (182)
.+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||
T Consensus 23 ~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 101 (169)
T 1yrv_A 23 RAYLLLHRDFCDLKE-NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101 (169)
T ss_dssp HHHHHHHHHHHHHHH-HCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCccc
Confidence 588999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccC--CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHh
Q 030171 113 DQYGNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFA 177 (182)
Q Consensus 113 ~~~G~icl~~l~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~ 177 (182)
+.+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++ |+++++
T Consensus 102 ~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 779999999998 8999999999999999999999999999999999999999 999999 988864
No 31
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.2e-47 Score=297.23 Aligned_cols=143 Identities=34% Similarity=0.605 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH 109 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~-~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 109 (182)
+++.+.+||++||++|++ ++++||++.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus 14 ~~~~~~~rL~kEl~~l~~-~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~H 92 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNK-NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWH 92 (172)
T ss_dssp CCCTTHHHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred ChHHHHHHHHHHHHHHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCcc
Confidence 455688999999999999 999999999875 799999999999999999999999999999999999999999999999
Q ss_pred cceeCCCcEEeeccC-------------CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-H-HHHHHHHHH
Q 030171 110 PNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-E-DYRKMVQKQ 174 (182)
Q Consensus 110 PnV~~~G~icl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~-~f~~~~~~~ 174 (182)
|||+.+|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++| + +|+++||+|
T Consensus 93 PNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 93 PNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 999999999999996 6899999999999999999999999999999999999999 9 999999986
No 32
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=3.7e-48 Score=294.62 Aligned_cols=143 Identities=32% Similarity=0.543 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccceeC
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 114 (182)
+.+||++||++|++ . |+++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.
T Consensus 3 a~~Rl~kEl~~l~~-~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 3 SLTRKQCDFTKLIM-A---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp CCCHHHHTHHHHHH-H---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHhcCc-C---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 45899999999988 4 7888888999999999999999999999999999999999999999999999999999996
Q ss_pred -CCcEEeeccCCccCCccCHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 115 -YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 115 -~G~icl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++| ++|.++||+++++||..
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999 6899999999999999999999999 99999999999999974
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2.2e-46 Score=290.20 Aligned_cols=148 Identities=26% Similarity=0.488 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHhhC-C------CC---CeEEEe-cCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCee
Q 030171 33 TSVTQRLQKELMSLMMSG-G------DL---GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQV 101 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~-~------~~---gi~~~~-~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 101 (182)
..+.+||++||++|++++ + +. ++.+.+ .++|+++|+++|.||++|||+||.|+|+|.||++||++||+|
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v 84 (172)
T 2y9m_A 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI 84 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEE
Confidence 468899999999999822 2 33 467778 788999999999999999999999999999999999999999
Q ss_pred eEec-ccccccee-CCCcEEeeccC-CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhc-h-HHHHHHHHHHHH
Q 030171 102 KFET-MCFHPNVD-QYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN-K-EDYRKMVQKQYF 176 (182)
Q Consensus 102 ~f~t-~i~HPnV~-~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~-~-~~f~~~~~~~~~ 176 (182)
+|.| +||||||+ .+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++ | ++|.++||+|++
T Consensus 85 ~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~ 164 (172)
T 2y9m_A 85 SFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLA 164 (172)
T ss_dssp EECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred EEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999 99999996 69999999998 899999999999999999999999999999999999999 9 999999999999
Q ss_pred hhhc
Q 030171 177 AGEF 180 (182)
Q Consensus 177 ~~a~ 180 (182)
+++.
T Consensus 165 ~~~~ 168 (172)
T 2y9m_A 165 ERER 168 (172)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9874
No 34
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.7e-47 Score=291.51 Aligned_cols=145 Identities=27% Similarity=0.590 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccee
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~-~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 113 (182)
+.+||++||++|++ ++++|+.+.+ .++|+++|+++|. |++|||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~RL~kEl~~l~~-~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 3 ASRRLMKELEEIRK-CGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp -CTTHHHHHTTCSS-SCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHh-CCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 56899999999999 8999998655 5789999999998 9999999999999999999999999999999999999999
Q ss_pred CCCcEEeeccC-CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 114 QYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 114 ~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
.+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+++++||..
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 99999999996 8999999999999999999999999999999999999999 99999999999999974
No 35
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-47 Score=296.33 Aligned_cols=143 Identities=31% Similarity=0.594 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccee
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 113 (182)
.+.+||++||++|+. .|+++.+. +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus 25 ~a~~RL~kEl~~l~~----~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~ 99 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE----SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID 99 (179)
T ss_dssp HHHHHHHHHHHHHHH----SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHhcCc----CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence 588999999999986 37888876 6789999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeeccCCccCCccCHHHHHHH-HHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 114 Q-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 114 ~-~G~icl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++| ++|.++||+++++||.+
T Consensus 100 ~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 100 EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170 (179)
T ss_dssp TTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred CCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 9 9999999999999999999999999 9999999999999999999999999 99999999999999963
No 36
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-46 Score=286.63 Aligned_cols=142 Identities=32% Similarity=0.585 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccc
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~-~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+.+.+||++||++| ++++|+++. +.++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|++||||
T Consensus 5 ~~~~~RL~kEl~~l---~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (160)
T 1y8x_A 5 SAAQLRIQKDINEL---NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 80 (160)
T ss_dssp CHHHHHHHHHHHTC---CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred cHHHHHHHHHHHhc---CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence 46889999999999 457899998 7889999999998 999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 030171 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 178 (182)
Q Consensus 112 V~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~ 178 (182)
|+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||++++..
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~ 148 (160)
T 1y8x_A 81 IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 148 (160)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred CCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999 99999999998864
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-46 Score=289.83 Aligned_cols=145 Identities=30% Similarity=0.546 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 30 ~~~~~~~kRL~~El~~l~~~~~~~gi~~~-~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
...+.+.+||++||++| ++++|+++. +.++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+||
T Consensus 22 ~~~~~~~~RL~kEl~~l---~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~ 97 (180)
T 2nvu_C 22 KKASAAQLRIQKDINEL---NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY 97 (180)
T ss_dssp CSCCHHHHHHHHHHHTC---CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred CCccHHHHHHHHHHHhc---CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc
Confidence 34557899999999999 467899998 7889999999998 999999999999999999999999999999999999
Q ss_pred ccceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhh
Q 030171 109 HPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAG 178 (182)
Q Consensus 109 HPnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~ 178 (182)
||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++| ++|.++||++++..
T Consensus 98 HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~ 168 (180)
T 2nvu_C 98 HPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168 (180)
T ss_dssp BTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSE
T ss_pred cCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999864
No 38
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-46 Score=289.15 Aligned_cols=143 Identities=29% Similarity=0.562 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccccee
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 113 (182)
.+.+||++||++|++ ++. ++ +.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus 12 ~~~~RL~~El~~l~~-~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~ 86 (171)
T 1yf9_A 12 RSNRRREMDYMRLCN-STR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD 86 (171)
T ss_dssp -CCHHHHHHHHHHHS-SSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHh-CCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCc
Confidence 456999999999998 663 44 3578999999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeeccCCccCCccCHHHHHHHH-HHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 114 Q-YGNICLDILQDKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 114 ~-~G~icl~~l~~~W~p~~~i~~iL~~i-~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
. +|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+|+++|++| ++|.++||+++++||..
T Consensus 87 ~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 87 ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp TTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred ccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 6 99999999999999999999999997 799999999999999999999999 99999999999999963
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2e-45 Score=317.57 Aligned_cols=148 Identities=38% Similarity=0.673 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccccccce
Q 030171 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 112 (182)
+.+.|||++||++|++ ++++|+++.|.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus 2 s~a~~RL~kEl~~l~~-~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 80 (399)
T 4ddg_A 2 AMALKRIHKELNDLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80 (399)
T ss_dssp HHHHHHHHHHHHHHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHh-CCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence 4689999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhcC
Q 030171 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEFE 181 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~~ 181 (182)
+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+|+++|++| ++|.++||+|+++||..
T Consensus 81 ~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 81 NSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp CTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999975
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=2.8e-45 Score=287.89 Aligned_cols=148 Identities=31% Similarity=0.492 Sum_probs=139.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCCeEEE----ecCCCCc---eEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCee
Q 030171 29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAF----PEGESIF---TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQV 101 (182)
Q Consensus 29 ~~~~~~~~kRL~~El~~l~~~~~~~gi~~~----~~~~n~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 101 (182)
+...+.+.+||++||++|+ .++|+++. +.++|++ +|+++|. |++|||+||.|+|+|.||++||++||+|
T Consensus 24 ~~~~s~a~~RL~kEl~~l~---~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v 99 (190)
T 3o2u_A 24 QPNLSAARIRLKRDLDSLD---LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKV 99 (190)
T ss_dssp SCCCCHHHHHHHHHHHTCC---CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEE
T ss_pred CCCccHHHHHHHHHHHhcc---CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCcee
Confidence 3344578999999999996 57899997 7889999 9999997 8889999999999999999999999999
Q ss_pred eEeccccccceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHHHHHHHHHHHhhhc
Q 030171 102 KFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRKMVQKQYFAGEF 180 (182)
Q Consensus 102 ~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a~ 180 (182)
+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|++.+..
T Consensus 100 ~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~ 179 (190)
T 3o2u_A 100 VCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179 (190)
T ss_dssp EECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEE
T ss_pred EEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999987754
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=6.3e-44 Score=275.18 Aligned_cols=139 Identities=24% Similarity=0.496 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhhCC------------CCCeEEEecCCCCceEEEEEecCCCCCCC--CCEEEEEEEcCCCCCCCCC
Q 030171 34 SVTQRLQKELMSLMMSGG------------DLGVSAFPEGESIFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPP 99 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~------------~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~pP 99 (182)
.+.|||++||++|++ ++ +.++.+.+.++|+++|+++|.||++|||+ ||.|+|.|.||++||++||
T Consensus 8 ~a~kRL~kEl~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP 86 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLE-EVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPP 86 (167)
T ss_dssp CCCHHHHHHHHHHHH-HHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCC
T ss_pred HHHHHHHHHHHHHHh-CcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCC
Confidence 467999999999998 66 67899999999999999999999999999 9999999999999999999
Q ss_pred eeeEeccccccceeCCCcEEeeccCCccCCccCHHHHH-HHHHHhhCC--CCCCCcccHHHHHHhhch-HHHHHHHHH
Q 030171 100 QVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTIL-LSIQSLLGE--PNPESPLNSYAAALLNNK-EDYRKMVQK 173 (182)
Q Consensus 100 ~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~iL-~~i~~ll~~--p~~~~p~N~ea~~~~~~~-~~f~~~~~~ 173 (182)
+|+|.|++|||||+.+|.||+++|.++|+|++++.++| ..|++|+.. |++++|+|.||+++|++| ++|.++||+
T Consensus 87 ~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 87 TVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp EEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred EEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 99999999999999999999999999999999999975 467778874 899999999999999999 999999983
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=9.6e-42 Score=285.40 Aligned_cols=152 Identities=26% Similarity=0.412 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCC----CeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEe
Q 030171 29 TVDTTSVTQRLQKELMSLMMSGGDL----GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 104 (182)
Q Consensus 29 ~~~~~~~~kRL~~El~~l~~~~~~~----gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 104 (182)
+..+..+.+||++||++|++ ++++ ++.+.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k-~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~ 149 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLST-SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE 149 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHH-HCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence 34567899999999999999 7666 456777899999999999999999999999999999999999999999999
Q ss_pred cc-----ccccceeCCCcEEeeccC-------CccCCcc-CHHHHHHHHHHhhC--CCCCCCcccHHH--HHHhhch-HH
Q 030171 105 TM-----CFHPNVDQYGNICLDILQ-------DKWSSAY-DCRTILLSIQSLLG--EPNPESPLNSYA--AALLNNK-ED 166 (182)
Q Consensus 105 t~-----i~HPnV~~~G~icl~~l~-------~~W~p~~-~i~~iL~~i~~ll~--~p~~~~p~N~ea--~~~~~~~-~~ 166 (182)
|+ ||||||+.+|.||+++|. ++|+|++ +|.+||.+|++||. +|++++|+|.++ +.++.+| ++
T Consensus 150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~ 229 (323)
T 3ceg_A 150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE 229 (323)
T ss_dssp CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence 98 999999999999999997 6899999 89999999999996 788899999987 6789999 99
Q ss_pred HHHHHHHHHHhhhcC
Q 030171 167 YRKMVQKQYFAGEFE 181 (182)
Q Consensus 167 f~~~~~~~~~~~a~~ 181 (182)
|.++||+++++||+.
T Consensus 230 Y~~~vr~~t~k~A~~ 244 (323)
T 3ceg_A 230 YDGNIRQATVKWAML 244 (323)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhhH
Confidence 999999999999973
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=2.3e-42 Score=263.62 Aligned_cols=131 Identities=30% Similarity=0.424 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc
Q 030171 32 TTSVTQRLQKELMSLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~-~~~gi~~~~~~-~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (182)
...+.+||++||++|++ + ++.|+++.+.+ + |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|
T Consensus 19 ~~~~~~RL~kEl~~l~~-~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 19 IVPRSFRLLDELERGQK-GNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp CCCHHHHHHHHHHHHHC-C-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred cchHHHHHHHHHHHHHh-CCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 34578999999999999 7 78899998853 3 599999999999999999999999999999999999999999999
Q ss_pred cccceeCCCcE---EeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch
Q 030171 108 FHPNVDQYGNI---CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 164 (182)
Q Consensus 108 ~HPnV~~~G~i---cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~ 164 (182)
|||||+.+|.| |+++|+ +|+|+++|++||.+|++||.+|++++|+|.+|+.+|++|
T Consensus 98 ~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 98 EMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred ccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 99999999999 899997 599999999999999999999999999999999999875
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-41 Score=251.04 Aligned_cols=120 Identities=31% Similarity=0.509 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc-cc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FH 109 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 109 (182)
+++.+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus 3 ~m~~a~~RL~kEl~~l~~-~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H 81 (125)
T 2fo3_A 3 NMGNANYRIQKELHNFLN-NPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH 81 (125)
T ss_dssp ------CHHHHHHHHHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred CchHHHHHHHHHHHHHHh-CCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence 345678999999999999 9999999999999999999999999999999999999999999999999999999996 99
Q ss_pred cceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCCCC
Q 030171 110 PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPES 151 (182)
Q Consensus 110 PnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~ 151 (182)
|||+.+|.||+++|.++|+|+++|.+||.+|++||.+|+.+.
T Consensus 82 Pnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 82 THVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp TTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred CcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 999999999999999999999999999999999999998653
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=6.3e-41 Score=250.42 Aligned_cols=118 Identities=30% Similarity=0.504 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc-cc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FH 109 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 109 (182)
+...+.+||++||++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus 17 ~~~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H 95 (136)
T 2h2y_A 17 NLGNANYRIQKELNNFLK-NPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKH 95 (136)
T ss_dssp CTTSHHHHHHHHHHHHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCC
T ss_pred cchHHHHHHHHHHHHHHh-CCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCC
Confidence 344588999999999999 9999999999999999999999999999999999999999999999999999999996 99
Q ss_pred cceeCCCcEEeeccCCccCCccCHHHHHHHHHHhhCCCCC
Q 030171 110 PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 149 (182)
Q Consensus 110 PnV~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~ 149 (182)
|||+.+|.||+++|.++|+|+++|.+||.+|++||.+|+.
T Consensus 96 Pnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 96 THVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999999999999999999999875
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=7.3e-41 Score=256.02 Aligned_cols=126 Identities=28% Similarity=0.386 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCC-eEEEec-CCC--CceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc
Q 030171 32 TTSVTQRLQKELMSLMMSGGDLG-VSAFPE-GES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~~~~g-i~~~~~-~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (182)
...+.+||++||++|++ ++++| +++.+. ++| +++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|
T Consensus 23 ~~p~~~RL~kEl~~l~~-~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 101 (160)
T 2a4d_A 23 KVPRNFRLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101 (160)
T ss_dssp CHHHHHHHHHHHHHHHS-CCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred echHHHHHHHHHHHHHh-CCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCc
Confidence 46789999999999999 88888 778774 454 89999999999999999999999999999999999999999999
Q ss_pred ccccee-CCCcEEeeccC--CccCCccCHHHHHHHHHHhhC-CCCCCCcccHHHH
Q 030171 108 FHPNVD-QYGNICLDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA 158 (182)
Q Consensus 108 ~HPnV~-~~G~icl~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~N~ea~ 158 (182)
|||||+ .+|.||+++|. ++|+|+++|++||.+|++||. +|+.++|+|.|||
T Consensus 102 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 102 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp CCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred eeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 999999 59999999997 899999999999999999996 7999999999987
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=7.3e-42 Score=256.09 Aligned_cols=128 Identities=26% Similarity=0.380 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc
Q 030171 32 TTSVTQRLQKELMSLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (182)
Q Consensus 32 ~~~~~kRL~~El~~l~~~~-~~~gi~~~~~~-~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (182)
...+.+||++||++|++ + ++.|+++.+.+ + |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|
T Consensus 4 ~~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 82 (138)
T 1jat_B 4 KVPRNFRLLEELEKGEK-GFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKI 82 (138)
T ss_dssp CCCHHHHHHHHHHHHHC-----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred hHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccc
Confidence 34577999999999999 7 78999998853 3 589999999999999999999999999999999999999999999
Q ss_pred cccceeCC-CcE--EeeccCCccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHh
Q 030171 108 FHPNVDQY-GNI--CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 161 (182)
Q Consensus 108 ~HPnV~~~-G~i--cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~ 161 (182)
|||||+.+ |.| |+++|+ +|+|+++|++||.+|+++|.+|++++|+|.+|+.+|
T Consensus 83 ~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 83 NLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred ccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 99999995 999 999986 899999999999999999999999999999988654
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=5.2e-41 Score=259.30 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=129.2
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHhhCCCCC-eEEEec-CCC--CceEEEEEecCCCCC
Q 030171 6 NPTVENLRATAAASSKQPVSSPNTVD---TTSVTQRLQKELMSLMMSGGDLG-VSAFPE-GES--IFTWIGTIEGGKGTM 78 (182)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~kRL~~El~~l~~~~~~~g-i~~~~~-~~n--~~~w~~~i~Gp~~tp 78 (182)
+.|.+-.+..|..+............ ...+.+||++||++|++ ++++| +++.+. ++| +++|+++|.||++||
T Consensus 4 ~~~~~~~~~~s~~~~~~~~~p~~~~~~~v~~p~~~RL~kEl~~l~~-~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~Tp 82 (170)
T 2hlw_A 4 EVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTI 82 (170)
T ss_dssp SCSSCCCCCSCSSSCSSCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCGGGCEEEEESSTTCSSCCBEEEEECCCSSST
T ss_pred hhhhhhhccccccccccccCCccccCCcccCHHHHHHHHHHHHHHh-CCCCCcEEEEecCcccccceeeEEEEeCCCCCC
Confidence 44555555555555555544443332 34578999999999999 88888 677763 454 899999999999999
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeeEecccccccee-CCCcEEeeccC--CccCCccCHHHHHHHHHHhhC-CCCCCCccc
Q 030171 79 YEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLN 154 (182)
Q Consensus 79 y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~-~~G~icl~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~N 154 (182)
|+||.|+|+|.||++||++||+|+|.|+||||||+ .+|.||+++|. ++|+|+++|++||.+|++||. .|+.++|+|
T Consensus 83 YegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n 162 (170)
T 2hlw_A 83 YENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQP 162 (170)
T ss_dssp TSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCC
T ss_pred cCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCC
Confidence 99999999999999999999999999999999999 69999999997 899999999999999999997 599999999
Q ss_pred HHHH
Q 030171 155 SYAA 158 (182)
Q Consensus 155 ~ea~ 158 (182)
.||+
T Consensus 163 ~eaa 166 (170)
T 2hlw_A 163 PEGQ 166 (170)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9986
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-40 Score=244.40 Aligned_cols=109 Identities=41% Similarity=0.729 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEE--ecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc--ccc
Q 030171 36 TQRLQKELMSLMMSGGDLGVSAF--PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF--HPN 111 (182)
Q Consensus 36 ~kRL~~El~~l~~~~~~~gi~~~--~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPn 111 (182)
.+||++||++|++ ++++||++. +.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++| |||
T Consensus 24 ~~RL~kEl~~l~~-~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPN 102 (136)
T 2a7l_A 24 QKRLQKELLALQN-DPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH 102 (136)
T ss_dssp CHHHHHHHHHHHH-SCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred HHHHHHHHHHHHh-CCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCcc
Confidence 4999999999999 999999965 78899999999999999999999999999999999999999999999999 999
Q ss_pred eeCCCcEEeeccCCccCCccCHHHHHHHHHHhhC
Q 030171 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 112 V~~~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~ 145 (182)
|+.+|+||+++|.++|+|+++|++||.+|++||.
T Consensus 103 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 103 VYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp BCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-39 Score=251.30 Aligned_cols=137 Identities=27% Similarity=0.447 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccccc
Q 030171 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 31 ~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+..+.+||++||++|++ ++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+ ||
T Consensus 11 ~~~~a~~RL~kEl~~l~~-~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~ 87 (187)
T 2f4w_A 11 APTTATQRLKQDYLRIKK-DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG 87 (187)
T ss_dssp ---CHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred CccHHHHHHHHHHHHHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence 345688999999999999 999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ceeCCCcEEeecc---CCccCCccCHHHHHHHHHHhhCCCCCCCc---ccHHHHHHhhch-HHHHHH
Q 030171 111 NVDQYGNICLDIL---QDKWSSAYDCRTILLSIQSLLGEPNPESP---LNSYAAALLNNK-EDYRKM 170 (182)
Q Consensus 111 nV~~~G~icl~~l---~~~W~p~~~i~~iL~~i~~ll~~p~~~~p---~N~ea~~~~~~~-~~f~~~ 170 (182)
||+.+|.||+++| .++|+|+++|.+||.+|+++|.+|+++.. ...+..+.|..+ ..|..+
T Consensus 88 ~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~~ 154 (187)
T 2f4w_A 88 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLK 154 (187)
T ss_dssp SBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHT
T ss_pred eeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHHHhhc
Confidence 9999999999999 68999999999999999999999887644 233344444444 444433
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=2.4e-39 Score=253.34 Aligned_cols=145 Identities=20% Similarity=0.334 Sum_probs=124.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEecC-CCCCCCC-----------CEEEEEEEc
Q 030171 26 SPNTVDTTSVTQRLQKELMSLMMSGG---DLGVSAFPEGESIFTWIGTIEGG-KGTMYEG-----------LSYKLSLRF 90 (182)
Q Consensus 26 ~~~~~~~~~~~kRL~~El~~l~~~~~---~~gi~~~~~~~n~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~f 90 (182)
......+..+.+||++||++|++ ++ +.++++.+.++|+++|+++|.|| ++|||+| |.|+|+|.|
T Consensus 19 ~g~~~~s~~a~~RL~kEl~~l~~-~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~f 97 (186)
T 1zuo_A 19 SGAVSGSVQASDRLMKELRDIYR-SQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSF 97 (186)
T ss_dssp -----CCHHHHHHHHHHHHHHHT-SHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CCcccccHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEEC
Confidence 34444566789999999999999 77 68899999999999999999997 9999998 899999999
Q ss_pred CCCCCCCCCeeeEecccccc-ceeCCCcEEeeccC-CccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhhch-HHH
Q 030171 91 PLDYPFKPPQVKFETMCFHP-NVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDY 167 (182)
Q Consensus 91 p~~YP~~pP~v~f~t~i~HP-nV~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~~~-~~f 167 (182)
|++||++||+|+|.+++||| ||+.+|.||+++|. ++|+|+++|++||.+|++||.+|+... +|..+ .+|
T Consensus 98 p~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y 169 (186)
T 1zuo_A 98 KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQY 169 (186)
T ss_dssp CTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCC
T ss_pred CCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHH
Confidence 99999999999999999999 69999999999997 789999999999999999999886432 34455 677
Q ss_pred HHHHHHHHHhhh
Q 030171 168 RKMVQKQYFAGE 179 (182)
Q Consensus 168 ~~~~~~~~~~~a 179 (182)
.+++++++.+.+
T Consensus 170 ~~~~~~~~~~~~ 181 (186)
T 1zuo_A 170 NLARAQQSYNSI 181 (186)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 777777665543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94 E-value=1.9e-28 Score=185.78 Aligned_cols=124 Identities=17% Similarity=0.272 Sum_probs=104.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCC----------EEEEEEEcCCC
Q 030171 24 VSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLD 93 (182)
Q Consensus 24 ~~~~~~~~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~ 93 (182)
++...+.+.....+||++||+.|++ ++.+..+|++.|.+.+.||.+|+|+|| .|+++|.||++
T Consensus 22 ~t~a~p~~~~~w~~RL~eE~k~L~k-------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~ 94 (172)
T 2z6o_A 22 KTNAGPRDRELWVQRLKEEYQSLIR-------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPIT 94 (172)
T ss_dssp CCCCCTTCTHHHHHHHHHHHHHHHH-------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTT
T ss_pred ccccCCCccHHHHHHHHHHHHHHHH-------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCC
Confidence 3344455577889999999999999 577778899999999999999999999 99999999999
Q ss_pred CCCCCCeeeEecc-ccccceeCCCcEEeecc-CC---ccCCccCHHHHHHHHHHhhCCCCCCCcccHHHHHHhh
Q 030171 94 YPFKPPQVKFETM-CFHPNVDQYGNICLDIL-QD---KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN 162 (182)
Q Consensus 94 YP~~pP~v~f~t~-i~HPnV~~~G~icl~~l-~~---~W~p~~~i~~iL~~i~~ll~~p~~~~p~N~ea~~~~~ 162 (182)
||++||+|+|.++ +|||||+.+|+|||++| .+ .|+|.++|.++|.- ....++..|+..+..
T Consensus 95 YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~ 160 (172)
T 2z6o_A 95 YPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQ 160 (172)
T ss_dssp TTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHH
T ss_pred CCCCCCeeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHH
Confidence 9999999999998 99999999999999999 44 45599999999842 122335566665544
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.82 E-value=6.2e-20 Score=139.88 Aligned_cols=114 Identities=23% Similarity=0.343 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhhCCC--CCeEEEecCCCCceEEEEEecCCCCCCCCCE---EEEEEEcCCCCCCCCCeeeEec------
Q 030171 37 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFET------ 105 (182)
Q Consensus 37 kRL~~El~~l~~~~~~--~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t------ 105 (182)
+|..+|+.++.+..+. +...+...++...++-+.+.|.-.++|+|+. |.+.|-||++||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 5777888887651332 2233455567777888888888889999999 8899999999999999998865
Q ss_pred -c---cc-ccceeCCCcEEeeccCCccCC-ccCHHHHHHHHHHhhCCCCCCC
Q 030171 106 -M---CF-HPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLGEPNPES 151 (182)
Q Consensus 106 -~---i~-HPnV~~~G~icl~~l~~~W~p-~~~i~~iL~~i~~ll~~p~~~~ 151 (182)
+ |+ |||||.+|+||+++|. +|+| +.++.++|.+|+++|.+|+++.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 9999999999999995 7999 6799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.79 E-value=2.3e-20 Score=138.64 Aligned_cols=103 Identities=21% Similarity=0.406 Sum_probs=86.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCC----------EEEEEEEcCCCCCCC
Q 030171 28 NTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFK 97 (182)
Q Consensus 28 ~~~~~~~~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~ 97 (182)
.+.+......||+.||+.|.+ ++....++-..|...+.|+.||+|.|+ .|+++|.||.+||.+
T Consensus 28 gPrd~~~w~~RlkeEy~alI~-------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~t 100 (168)
T 3kpa_A 28 GPRDGDKWTARLKEEYASLIT-------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQA 100 (168)
T ss_dssp CTTSTHHHHHHHHHHHHHHHH-------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHH-------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCC
Confidence 334456799999999999998 666666677799999999999999999 899999999999999
Q ss_pred CCeeeEecc-ccccceeCCCcEEeeccC-Ccc---CCccCHHHHH
Q 030171 98 PPQVKFETM-CFHPNVDQYGNICLDILQ-DKW---SSAYDCRTIL 137 (182)
Q Consensus 98 pP~v~f~t~-i~HPnV~~~G~icl~~l~-~~W---~p~~~i~~iL 137 (182)
||.|+|.+. .+|||++.+|+|||+++. .-| .|.++|.+.|
T Consensus 101 PPeI~Fp~ldgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 101 PPEIALPELEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp CCCCBCGGGTTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred CCEeecccccCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence 999999995 899999999999999871 223 2445676655
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.54 E-value=3.1e-14 Score=106.64 Aligned_cols=101 Identities=24% Similarity=0.399 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEe---cCCCCceEEEEEecCCCCCCCCCEEEE--EEEcCCCCCCCCCeeeEecc------c
Q 030171 39 LQKELMSLMMSGGDLGVSAFP---EGESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM------C 107 (182)
Q Consensus 39 L~~El~~l~~~~~~~gi~~~~---~~~n~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i 107 (182)
..+|+..+.+.-+........ ...++..|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ .
T Consensus 25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~ 99 (146)
T 3obq_A 25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK 99 (146)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence 345776665512222222211 1357889999997 5799999995 899999999999999 6655 5
Q ss_pred cccceeCCCcEEeeccCCccCC-ccCHHHHHHHHHHhhC
Q 030171 108 FHPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLG 145 (182)
Q Consensus 108 ~HPnV~~~G~icl~~l~~~W~p-~~~i~~iL~~i~~ll~ 145 (182)
+|||||.+|+||++.|. +|++ ..+|.++|..|+++|.
T Consensus 100 ~~~~Vd~~G~i~lpyL~-~W~~~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 100 TGKHVDANGKIYLPYLH-EWKHPQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp CBTTBCTTCBBCCHHHH-TCCTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEeccccc-ccCCCCCCHHHHHHHHHHHHh
Confidence 89999999999999996 4987 7899999999999997
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.0078 Score=42.97 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEec
Q 030171 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 35 ~~kRL~~El~~l~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
...+...|+..|.. .-+..+.+. ......+.+.|....+..-..-.+.+.|.||++||..||.|.+..
T Consensus 11 ~~e~q~~EleaL~s-Iy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALES-IYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHH-HCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHH-HccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 45667889999988 655555442 233456666665322222234478999999999999999987654
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.04 E-value=0.046 Score=38.82 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecC--CCCceEEEEEecCCCCCC--CCCEEEEEEEcCCCCCCCCCeeeEec
Q 030171 38 RLQKELMSLMMSGGDLGVSAFPEG--ESIFTWIGTIEGGKGTMY--EGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 38 RL~~El~~l~~~~~~~gi~~~~~~--~n~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
+...|+..|+. .-+..+.+.... .....+.+.+..+.+..- ..-.+.+.|.||++||..+|.|.+..
T Consensus 12 ~~~~EleaL~S-IY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 12 VLPSEVEVLES-IYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp HHHHHHHHHHH-HSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHH-HCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 57789999988 666556544222 234455555652222111 12478899999999999999998775
No 58
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.87 E-value=0.18 Score=37.14 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhCCC--CCeEEEec-------------CCC-C--ceEEEEEecCCCCCCCCCEEEEEEEcCCCCC
Q 030171 34 SVTQRLQKELMSLMMSGGD--LGVSAFPE-------------GES-I--FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYP 95 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~--~gi~~~~~-------------~~n-~--~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP 95 (182)
....+-..|+..|.. .-+ .-+.+.-. ..+ . ..+.+.|.-. + + ...+.++|.+|.+||
T Consensus 14 ~~~e~Q~eElEaL~S-IY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~-~-~--~~~i~L~v~lP~~YP 88 (154)
T 2daw_A 14 ESLQLQLLEMEMLFS-MFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIE-E-P--KVKIDLQVTMPHSYP 88 (154)
T ss_dssp HHHHHHHHHHHHHHH-HCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEET-T-T--TEEEEEEEEECSSTT
T ss_pred hhHHHHHHHHHHHHH-hCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecC-C-C--CceEEEEEEcCCCCC
Confidence 344566778888887 544 44544210 001 2 3455444421 1 1 138999999999999
Q ss_pred CCCCeeeEec
Q 030171 96 FKPPQVKFET 105 (182)
Q Consensus 96 ~~pP~v~f~t 105 (182)
..+|.|....
T Consensus 89 ~~~P~i~l~~ 98 (154)
T 2daw_A 89 YLALQLFGRS 98 (154)
T ss_dssp SSCCEEEEEC
T ss_pred CCCCcEEEEe
Confidence 9999997655
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.1 Score=37.48 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecC------CCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEec
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~------~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
....+-..|+..|.. .-+..+.+.... .....+.+.|....+ .-..-.+.+.|.+|++||..||.|.+..
T Consensus 10 ~~~e~q~~EleaL~S-IY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 10 QYYEIQCNELEAIRS-IYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHHHT-TSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred chHHHHHHHHHHHHH-HChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 344567788888887 655444332111 124567777774322 1123478899999999999999998754
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.33 E-value=0.11 Score=37.21 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEecCCC-C-CCCCCEEEEEEEcCCCCCCCCCeeeEe
Q 030171 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKG-T-MYEGLSYKLSLRFPLDYPFKPPQVKFE 104 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi~~~~~~~-----n~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~ 104 (182)
....+...|+..|+. .-+..+.+..... ....+.+.|. +.+ . .-..-.+.+.|.||++||..+|.|.+.
T Consensus 10 ~~~e~q~~EleaL~S-IY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 10 SYSQRQDHELQALEA-IYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CHHHHHHHHHHHHHH-HTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred chHHHHHHHHHHHHH-HCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 345577889999988 6555554432111 1345666665 221 1 001246899999999999999999874
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.23 E-value=0.12 Score=36.74 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhCCCC--CeEEEec-CCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEe
Q 030171 38 RLQKELMSLMMSGGDL--GVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 104 (182)
Q Consensus 38 RL~~El~~l~~~~~~~--gi~~~~~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 104 (182)
+...|+..|+. .-+. .+.+... ..+...+.+.+... +..-..-.+.+.|.||++||..+|.|.+.
T Consensus 11 ~q~~EleaL~S-Iy~d~~e~~~~~~~~~~~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 11 PVQEELSVLAA-IFCRPHEWEVLSRSETDGTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHH-HHCCTTTCCCSEECSSSCEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHH-HcCCCCceEEecCCCCCCCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 45678888877 4332 3332211 12345777777632 21111247899999999999999998755
No 62
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=94.05 E-value=0.63 Score=35.59 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=58.5
Q ss_pred HHHHHHHHH--HhhCCCCCeEEEecCCCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEeccc-cccceeC
Q 030171 38 RLQKELMSL--MMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FHPNVDQ 114 (182)
Q Consensus 38 RL~~El~~l--~~~~~~~gi~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~ 114 (182)
+|.+|+.++ .+ +.-.+.++....+.+.... |-...+.|.++.+||.++|.+...-|. ++
T Consensus 5 ~li~Ei~~iGW~~--------l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~----- 66 (186)
T 3zqs_A 5 SLIEEIGTLGWDK--------LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPVPFC----- 66 (186)
T ss_dssp SHHHHHHHHCGGG--------EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSSCCC-----
T ss_pred HHHHHHHHhCCce--------eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCCCcc-----
Confidence 677888876 33 3334678889988888433 578999999999999999987655442 21
Q ss_pred CCcEEeeccCCccCCccCHHHHHHHHHHhhC
Q 030171 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~iL~~i~~ll~ 145 (182)
-.|++..++.+++..++..+.
T Consensus 67 ----------~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 67 ----------ASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp ----------CCCCTTCCHHHHHHHHHHHHH
T ss_pred ----------cccCCCccHHHHHHHHHHHHH
Confidence 379988888888777666553
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=88.97 E-value=0.28 Score=35.85 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCCCCCCeeeEecc
Q 030171 83 SYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 83 ~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
.+.+.|.+|.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999986653
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=71.45 E-value=0.82 Score=31.88 Aligned_cols=32 Identities=3% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHhhch-HHHHHHHHHHHHhhh
Q 030171 148 NPESPLNSYAAALLNNK-EDYRKMVQKQYFAGE 179 (182)
Q Consensus 148 ~~~~p~N~ea~~~~~~~-~~f~~~~~~~~~~~a 179 (182)
....|.+.++|+.|+++ +.|...+|.|+.-||
T Consensus 22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a 54 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA 54 (108)
T ss_dssp ---------------------------------
T ss_pred ccCCchhHHHHHHHHhchhccccccccccccCc
Confidence 34578999999999999 999999999996665
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=51.23 E-value=15 Score=18.11 Aligned_cols=21 Identities=29% Similarity=0.220 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCe
Q 030171 34 SVTQRLQKELMSLMMSGGDLGV 55 (182)
Q Consensus 34 ~~~kRL~~El~~l~~~~~~~gi 55 (182)
+-+.||.-|+...+. +++.|.
T Consensus 5 seldrlllelnavqh-nppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQH-NPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhcc-CCCCCC
Confidence 457899999999998 888774
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=30.62 E-value=41 Score=25.77 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.4
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeeEec
Q 030171 80 EGLSYKLSLRFPLDYPF-----KPPQVKFET 105 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 105 (182)
+.|.|.|+-.+|--||. +||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46899999999999998 788888763
No 67
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=30.23 E-value=21 Score=17.60 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=10.2
Q ss_pred CCCCCeeeEeccccccc
Q 030171 95 PFKPPQVKFETMCFHPN 111 (182)
Q Consensus 95 P~~pP~v~f~t~i~HPn 111 (182)
|...|.-.|..+.|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 44455555667777763
No 68
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=29.06 E-value=1.3e+02 Score=22.49 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=33.4
Q ss_pred CCCceEEEEEecCCCCCCCCCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 62 ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 62 ~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
+.-+.|.|.+.|+.+.-...-+=++.+.|.+.||. |.-.+..+.|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 45789999999987654444577789999999974 6666666555
No 69
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=27.10 E-value=1.6e+02 Score=21.06 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=33.0
Q ss_pred CceEE--EEEecCCCCCCC-CCEEEEEEEcCCCCCCCCCeeeEecccc
Q 030171 64 IFTWI--GTIEGGKGTMYE-GLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 64 ~~~w~--~~i~Gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
...|. +.+.|+.+.... .-+=++.+.+.+.|+ .|...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 36998 889998887654 456678888999987 48777777665
No 70
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.78 E-value=38 Score=22.33 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHH
Q 030171 32 TTSVTQRLQKELMSL 46 (182)
Q Consensus 32 ~~~~~kRL~~El~~l 46 (182)
.-+-+|||++||+-|
T Consensus 60 ~LsQLKRvQRdlrGL 74 (87)
T 2rf4_B 60 SISQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCC
Confidence 345678999999854
No 71
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=20.47 E-value=1.3e+02 Score=21.29 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=28.7
Q ss_pred cCHHHHHHHHHH------hhCCCCC--CCcccHHHHHHhhchHHHHHHHHHHHHhhhc
Q 030171 131 YDCRTILLSIQS------LLGEPNP--ESPLNSYAAALLNNKEDYRKMVQKQYFAGEF 180 (182)
Q Consensus 131 ~~i~~iL~~i~~------ll~~p~~--~~p~N~ea~~~~~~~~~f~~~~~~~~~~~a~ 180 (182)
-++..+|..|+. ++.+|.. +.|+ ..+.|.++++..++++.+
T Consensus 91 ~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI---------~s~~Fd~~v~~~~~~~~~ 139 (145)
T 2j3t_C 91 GPIRDVLHHIYSALYVEFVVKNPLCPLGQTV---------QSELFRSRLDSYVRSLPF 139 (145)
T ss_dssp CCCHHHHHHHHHTTHHHHTTTCTTSCTTSCC---------CCHHHHHHHHHHHTTSTT
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCCCce---------ecHHHHHHHHHHHHhCcc
Confidence 368888888884 4556643 4454 227799999999988764
Done!