BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030172
(182 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225433644|ref|XP_002264430.1| PREDICTED: 30S ribosomal protein S1 homolog [Vitis vinifera]
gi|296089601|emb|CBI39420.3| unnamed protein product [Vitis vinifera]
Length = 390
Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/187 (73%), Positives = 161/187 (86%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPSHSCKEP K+I EIAKGL GS+ISVKVI A+EE +KL+FSEK+A W K+S ++N+ D
Sbjct: 136 LSPSHSCKEPHKTIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGD 195
Query: 61 IF---VG--RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
IF VG DYGAF+HLRFPDGLYHLTGLVHVSEVSWDL+QD+RD+LNEGDEVRVK++K
Sbjct: 196 IFEAMVGSVEDYGAFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVK 255
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+DR KSRITLSIKQLEEDPLLETL+KVIPQDGS D S+ +S+S IEPLPGL IFE
Sbjct: 256 VDRVKSRITLSIKQLEEDPLLETLDKVIPQDGSTGPD--SLRTSDSYDIEPLPGLETIFE 313
Query: 176 ELLQEDG 182
ELLQE+G
Sbjct: 314 ELLQEEG 320
>gi|224131510|ref|XP_002321102.1| predicted protein [Populus trichocarpa]
gi|222861875|gb|EEE99417.1| predicted protein [Populus trichocarpa]
Length = 299
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/188 (73%), Positives = 159/188 (84%), Gaps = 8/188 (4%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPSHSCK+PQK+IHEIAK LTG +ISVKVI A EE +KL+FSEK+AVW+K+S +NV +
Sbjct: 44 LSPSHSCKDPQKTIHEIAKDLTGLLISVKVIHAEEENRKLIFSEKEAVWSKFSKGINVGE 103
Query: 61 IFVGR-----DYGAFIHLRFPDG-LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114
IF GR DYGAFIH+RFPDG LYHLTGLVHVSEVSWDL+QD+RDILN GDEV VK+I
Sbjct: 104 IFAGRVGSVEDYGAFIHMRFPDGSLYHLTGLVHVSEVSWDLVQDVRDILNVGDEVTVKII 163
Query: 115 KIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
ID+ KSRITLSIKQLEEDPLLETL+KVIPQDGS+ D SM NS TIEPLPGL +IF
Sbjct: 164 DIDQGKSRITLSIKQLEEDPLLETLDKVIPQDGSIAPDPLSM--HNSITIEPLPGLESIF 221
Query: 175 EELLQEDG 182
+EL +EDG
Sbjct: 222 QELTREDG 229
>gi|356569689|ref|XP_003553029.1| PREDICTED: 40S ribosomal protein S1-like [Glycine max]
Length = 378
Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/187 (71%), Positives = 154/187 (82%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP H+ KEP+KSI EIA+GL GSI+SVKVI A+E+ KKL+FSEK+A W+KYS +VNV D
Sbjct: 124 LSPVHASKEPEKSIQEIAQGLIGSIMSVKVILADEDNKKLIFSEKEAAWSKYSKQVNVGD 183
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
IF R DYGAF+HLRFPDGLYHLTGL+HVSEVSWDLIQD+RDIL GDEVR KV+
Sbjct: 184 IFEVRVGYVEDYGAFVHLRFPDGLYHLTGLIHVSEVSWDLIQDVRDILKVGDEVRAKVVG 243
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID KSRI LSI+QLEEDPLLETL+KVIPQDGS +D SMS +S +IEPLPGL I E
Sbjct: 244 IDWGKSRINLSIRQLEEDPLLETLDKVIPQDGS--ADPDSMSGGDSGSIEPLPGLETILE 301
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 302 ELLQEDG 308
>gi|356538073|ref|XP_003537529.1| PREDICTED: 30S ribosomal protein S1 homolog [Glycine max]
Length = 383
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 133/187 (71%), Positives = 154/187 (82%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP H+ KEP+KSI EIA+GL GSI+SVKVI A+E+ KKL+FSEK+A W+K+S +VNV D
Sbjct: 129 LSPVHASKEPEKSIQEIAQGLIGSIMSVKVILADEDNKKLIFSEKEAAWSKFSKQVNVGD 188
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
IF R DYGAF+HLRFPDGLY LTGL+HVSEVSWDLIQD+RDIL GDEVRVKV+
Sbjct: 189 IFEVRVGYVEDYGAFVHLRFPDGLYRLTGLIHVSEVSWDLIQDVRDILKVGDEVRVKVVG 248
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID KSRI LSI+QLEEDPLLETL+KVIPQDGS +D SMS +S +IEPLPGL I E
Sbjct: 249 IDWGKSRINLSIRQLEEDPLLETLDKVIPQDGS--ADPDSMSGGDSGSIEPLPGLETILE 306
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 307 ELLQEDG 313
>gi|147802809|emb|CAN68483.1| hypothetical protein VITISV_006784 [Vitis vinifera]
Length = 418
Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 161/215 (74%), Gaps = 35/215 (16%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPSHSCKEP K+I EIAKGL GS+ISVKVI A+EE +KL+FSEK+A W K+S ++N+ D
Sbjct: 136 LSPSHSCKEPHKTIQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGD 195
Query: 61 IF---VG--RDYGAFIHLRFPDG----------LYHLTGLVHVSEVSWDLIQDIRDILNE 105
IF VG DYGAF+HLRFPDG LYHLTGLVHVSEVSWDL+QD+RD+LNE
Sbjct: 196 IFEAMVGSVEDYGAFVHLRFPDGTSFSVTYITGLYHLTGLVHVSEVSWDLVQDVRDVLNE 255
Query: 106 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP------------------QDG 147
GDEVRVK++K+DR KSRITLSIKQLEEDPLLETL+KVIP QDG
Sbjct: 256 GDEVRVKIVKVDRVKSRITLSIKQLEEDPLLETLDKVIPQIIFLLHRTKSSDVSHLLQDG 315
Query: 148 SVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDG 182
S D S+ +S+S IEPLPGL IFEELLQE+G
Sbjct: 316 STGPD--SLRTSDSYDIEPLPGLETIFEELLQEEG 348
>gi|18403854|ref|NP_566737.1| ribosomal protein S1-like RNA-binding domain-containing protein
[Arabidopsis thaliana]
gi|9293944|dbj|BAB01847.1| unnamed protein product [Arabidopsis thaliana]
gi|15146284|gb|AAK83625.1| AT3g23700/MYM9_3 [Arabidopsis thaliana]
gi|22655022|gb|AAM98102.1| At3g23700/MYM9_3 [Arabidopsis thaliana]
gi|332643282|gb|AEE76803.1| ribosomal protein S1-like RNA-binding domain-containing protein
[Arabidopsis thaliana]
Length = 392
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/187 (70%), Positives = 152/187 (81%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPS SCKEPQKSIHEIAK L GS + VKV+QA+EE +KL+ SEK A+W KYS VNV D
Sbjct: 138 LSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGD 197
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+F GR DYGAFIHLRF DGLYHLTGLVHVSEVSWD +QD+RD+L +GDEVRV V
Sbjct: 198 VFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTN 257
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID+EKSRITLSIKQLE+DPLLETL+KVI +D + S S+SS+N +TIEPLPGL I E
Sbjct: 258 IDKEKSRITLSIKQLEDDPLLETLDKVILKD--SSTGSPSLSSNNGDTIEPLPGLETILE 315
Query: 176 ELLQEDG 182
ELL+EDG
Sbjct: 316 ELLKEDG 322
>gi|297835412|ref|XP_002885588.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297331428|gb|EFH61847.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 392
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/187 (70%), Positives = 152/187 (81%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPS SCKEPQKSIHEIAK L GS + VKV+QA+EE +KL+ SEK A+W KYS V+V D
Sbjct: 138 LSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVSVGD 197
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+F GR DYGAFIHLRF DGLYHLTGLVHVSEVSWD +QD+RD+L +GDEVRV V
Sbjct: 198 VFTGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTN 257
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID+EKSRITLSIKQLE+DPLLETL+KVI +D S S S+SS+N +TIEPLPGL I E
Sbjct: 258 IDKEKSRITLSIKQLEDDPLLETLDKVILKD--SSSGSPSLSSNNGDTIEPLPGLETILE 315
Query: 176 ELLQEDG 182
ELL+EDG
Sbjct: 316 ELLKEDG 322
>gi|449484641|ref|XP_004156938.1| PREDICTED: 30S ribosomal protein S1-like [Cucumis sativus]
Length = 379
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 149/187 (79%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPSHSCKEP KSI +IAK L GS+ISVKVIQA+E+ +KL+FSEK+A +K+S +V V D
Sbjct: 125 LSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGD 184
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
++ G+ DYGAF+HLR DGLYHLTGLVHVSEVSWDL+QD+RDIL+EGDEV VKVI
Sbjct: 185 VYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVIN 244
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+++ KSRITLSI+QLEEDPLLETL+KVIPQD S D S + I PLPGL I E
Sbjct: 245 VNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPD--SFGPKGDSEIIPLPGLETIIE 302
Query: 176 ELLQEDG 182
ELLQE+G
Sbjct: 303 ELLQEEG 309
>gi|449468800|ref|XP_004152109.1| PREDICTED: 30S ribosomal protein S1-like [Cucumis sativus]
Length = 378
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/187 (65%), Positives = 149/187 (79%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPSHSCKEP KSI +IAK L GS+ISVKVIQA+E+ +KL+FSEK+A +K+S +V V D
Sbjct: 124 LSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGD 183
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
++ G+ DYGAF+HLR DGLYHLTGLVHVSEVSWDL+QD+RDIL+EGDEV VKVI
Sbjct: 184 VYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVIN 243
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+++ KSRITLSI+QLEEDPLLETL+KVIPQ+ S D S + I PLPGL I E
Sbjct: 244 VNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPD--SFGPKGDSEIIPLPGLETIIE 301
Query: 176 ELLQEDG 182
ELLQE+G
Sbjct: 302 ELLQEEG 308
>gi|357462911|ref|XP_003601737.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355490785|gb|AES71988.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 399
Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/187 (65%), Positives = 150/187 (80%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP HSC+EP ++I E A+ L G+I+SVKVI +EE +KLV SEK+A W K+S +N+ D
Sbjct: 145 LSPVHSCQEPDQTIKERARELIGAILSVKVIIVDEEKRKLVLSEKEASWFKHSKHINIGD 204
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+F GR DYGAF+HLRFPDGLYHLTGL+H+SEVSWDL+QD+RD L EG+EVRVKVI
Sbjct: 205 LFEGRVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVIS 264
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID K R+TLSIKQLEEDPLLETL+KVI QDGS + +S+SS+ S+ I+PLPGL I E
Sbjct: 265 IDTVKMRLTLSIKQLEEDPLLETLDKVIRQDGSGV--PNSISSTTSSPIDPLPGLDTILE 322
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 323 ELLQEDG 329
>gi|388509420|gb|AFK42776.1| unknown [Medicago truncatula]
Length = 399
Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/187 (64%), Positives = 149/187 (79%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP HSC+EP ++I E A+ L G+I+SVKVI +EE +KLV SEK+A W K+S +N+
Sbjct: 145 LSPVHSCQEPDQTIKERARELIGAILSVKVIIVDEEKRKLVLSEKEASWFKHSKHINIGG 204
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+F GR DYGAF+HLRFPDGLYHLTGL+H+SEVSWDL+QD+RD L EG+EVRVKVI
Sbjct: 205 LFEGRVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVIS 264
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID K R+TLSIKQLEEDPLLETL+KVI QDGS + +S+SS+ S+ I+PLPGL I E
Sbjct: 265 IDTVKMRLTLSIKQLEEDPLLETLDKVIRQDGSGV--PNSISSTTSSPIDPLPGLDTILE 322
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 323 ELLQEDG 329
>gi|194689506|gb|ACF78837.1| unknown [Zea mays]
gi|194706906|gb|ACF87537.1| unknown [Zea mays]
gi|219887451|gb|ACL54100.1| unknown [Zea mays]
gi|414873910|tpg|DAA52467.1| TPA: RNA binding S1 [Zea mays]
Length = 366
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 140/187 (74%), Gaps = 9/187 (4%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I ++ K L G+ ISVKV + NEE KKLVFSEKDA W+ YSSR+ + D
Sbjct: 114 LSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGD 173
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNEGD V+V V+
Sbjct: 174 IYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVN 233
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID KSRI LSI+QLEEDPLLETL+KVIP + +D S + + +E LPGL I
Sbjct: 234 IDMTKSRIALSIRQLEEDPLLETLDKVIPLE----ADQSPNRMMSPSEVELLPGLDGICN 289
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 290 ELLQEDG 296
>gi|226509759|ref|NP_001151317.1| RNA binding S1 [Zea mays]
gi|195645792|gb|ACG42364.1| RNA binding S1 [Zea mays]
Length = 366
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 140/187 (74%), Gaps = 9/187 (4%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I ++ K L G+ ISVKV + NEE KKLVFSEKDA W+ YSSR+ + D
Sbjct: 114 LSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGD 173
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNEGD V+V V+
Sbjct: 174 IYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVN 233
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID KSRI LSI+QLEEDPLLETL+KVIP + +D S + + +E LPGL I
Sbjct: 234 IDMTKSRIALSIRQLEEDPLLETLDKVIP----LKADQSPNRMISPSEVELLPGLDGICN 289
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 290 ELLQEDG 296
>gi|357114737|ref|XP_003559151.1| PREDICTED: 30S ribosomal protein S1-like [Brachypodium distachyon]
Length = 354
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 140/187 (74%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I +I K L GS ISVKV + NEE KKLVFSEKDA W+ YSS+V + D
Sbjct: 100 LSPAHWCKDPKRPIQDITKDLVGSSISVKVSEVNEEEKKLVFSEKDASWSAYSSQVKIGD 159
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+ G YGAF+HLRFPDG YHLTGLVH+SEVSWDL+QD++D LNEGD V+V V+K
Sbjct: 160 TYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVQDFLNEGDTVKVVVVK 219
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID EKSRI LSI+QLEEDPLLETL+K+IP + + D+ SS +E LPGL I
Sbjct: 220 IDAEKSRIALSIRQLEEDPLLETLDKIIPLEPDLSPDAQITSSPAE--VELLPGLEGICN 277
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 278 ELLQEDG 284
>gi|242032271|ref|XP_002463530.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
gi|241917384|gb|EER90528.1| hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]
Length = 366
Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/187 (59%), Positives = 139/187 (74%), Gaps = 9/187 (4%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H C++P++ I +I K L G+ ISVKV + NEE +KLVFSEKDA W+ YSS + + D
Sbjct: 114 LSPAHWCEDPKRPIQDITKDLVGTSISVKVAEVNEEERKLVFSEKDASWSTYSSLIKIGD 173
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNEGD V+V V+
Sbjct: 174 IYDGIVGSVFPYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVQDFLNEGDAVKVIVVN 233
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID KSRI LSI+QLEEDPLLETL+KVIP + +D S + + +E LPGL I
Sbjct: 234 IDTAKSRIALSIRQLEEDPLLETLDKVIPLE----ADQSPDRMMSPSEVELLPGLDGICN 289
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 290 ELLQEDG 296
>gi|224035425|gb|ACN36788.1| unknown [Zea mays]
gi|414873911|tpg|DAA52468.1| TPA: hypothetical protein ZEAMMB73_351223 [Zea mays]
Length = 370
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/191 (59%), Positives = 140/191 (73%), Gaps = 13/191 (6%)
Query: 1 MSPSHSCK----EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV 56
+SP+H CK +P++ I ++ K L G+ ISVKV + NEE KKLVFSEKDA W+ YSSR+
Sbjct: 114 LSPAHWCKAKLADPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRI 173
Query: 57 NVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRV 111
+ DI+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNEGD V+V
Sbjct: 174 KIGDIYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKV 233
Query: 112 KVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLG 171
V+ ID KSRI LSI+QLEEDPLLETL+KVIP + +D S + + +E LPGL
Sbjct: 234 IVVNIDMTKSRIALSIRQLEEDPLLETLDKVIPLE----ADQSPNRMMSPSEVELLPGLD 289
Query: 172 AIFEELLQEDG 182
I ELLQEDG
Sbjct: 290 GICNELLQEDG 300
>gi|414873909|tpg|DAA52466.1| TPA: hypothetical protein ZEAMMB73_351223, partial [Zea mays]
Length = 263
Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 120/149 (80%), Gaps = 5/149 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I ++ K L G+ ISVKV + NEE KKLVFSEKDA W+ YSSR+ + D
Sbjct: 114 LSPAHWCKDPKRPIQDVTKDLVGTSISVKVAEVNEEEKKLVFSEKDASWSTYSSRIKIGD 173
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HLRFPDGLYHLTGLVH+SEVSWDL+QD++D LNEGD V+V V+
Sbjct: 174 IYDGIVGSVFHYGAFVHLRFPDGLYHLTGLVHISEVSWDLVQDVKDFLNEGDAVKVIVVN 233
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIP 144
ID KSRI LSI+QLEEDPLLETL+KVIP
Sbjct: 234 IDMTKSRIALSIRQLEEDPLLETLDKVIP 262
>gi|115456549|ref|NP_001051875.1| Os03g0844900 [Oryza sativa Japonica Group]
gi|41469634|gb|AAS07357.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
sativa Japonica Group]
gi|108712064|gb|ABF99859.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|113550346|dbj|BAF13789.1| Os03g0844900 [Oryza sativa Japonica Group]
gi|215712403|dbj|BAG94530.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 339
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 141/189 (74%), Gaps = 8/189 (4%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I ++ K L GS ISVKV++ NEE +KLVFSEKDA W +SS V +
Sbjct: 122 LSPAHWCKDPKRPIQDVTKDLVGSSISVKVVEVNEEERKLVFSEKDASWFTHSSLVKIGA 181
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HLRFPDG YHLTGLVH+SEVSWDL+QD+RD LNEGD V+V V+
Sbjct: 182 IYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTVKVIVVN 241
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP--LPGLGAI 173
ID EKSRI LSI+QLEEDPLLETL+KVIP + S S+ + SS+S+ E LPGL I
Sbjct: 242 IDMEKSRIALSIRQLEEDPLLETLDKVIPLEADQ-SPSAGIISSDSSPSEADLLPGLDGI 300
Query: 174 FEELLQEDG 182
ELLQEDG
Sbjct: 301 CNELLQEDG 309
>gi|41469635|gb|AAS07358.1| putative ribosomal S1 protein (with alternative splicing) [Oryza
sativa Japonica Group]
gi|108712065|gb|ABF99860.1| S1 RNA binding domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|218194088|gb|EEC76515.1| hypothetical protein OsI_14295 [Oryza sativa Indica Group]
gi|222626154|gb|EEE60286.1| hypothetical protein OsJ_13343 [Oryza sativa Japonica Group]
Length = 379
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 141/189 (74%), Gaps = 8/189 (4%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I ++ K L GS ISVKV++ NEE +KLVFSEKDA W +SS V +
Sbjct: 122 LSPAHWCKDPKRPIQDVTKDLVGSSISVKVVEVNEEERKLVFSEKDASWFTHSSLVKIGA 181
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HLRFPDG YHLTGLVH+SEVSWDL+QD+RD LNEGD V+V V+
Sbjct: 182 IYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTVKVIVVN 241
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP--LPGLGAI 173
ID EKSRI LSI+QLEEDPLLETL+KVIP + S S+ + SS+S+ E LPGL I
Sbjct: 242 IDMEKSRIALSIRQLEEDPLLETLDKVIPLEADQ-SPSAGIISSDSSPSEADLLPGLDGI 300
Query: 174 FEELLQEDG 182
ELLQEDG
Sbjct: 301 CNELLQEDG 309
>gi|326502718|dbj|BAJ98987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 371
Score = 204 bits (520), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 140/187 (74%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I ++ K L GS +SVKV++ANE KKLVFSEKDA W+ YSS+V +
Sbjct: 117 LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGG 176
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HL+FPDG YHLTGLVH+SEVSWDL+QD++D L EGD V+V V+
Sbjct: 177 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 236
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+D EKSRI LSI+QLEEDPLLETL+K+IP + + D+ + SS IE LPGL I
Sbjct: 237 VDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAASSPPE--IELLPGLDGICN 294
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 295 ELLQEDG 301
>gi|255555184|ref|XP_002518629.1| hypothetical protein RCOM_1307020 [Ricinus communis]
gi|223542228|gb|EEF43771.1| hypothetical protein RCOM_1307020 [Ricinus communis]
Length = 365
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 133/187 (71%), Gaps = 24/187 (12%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SPSHSCKEPQ SIHEIA+GL GS ISVKV+QA EE +KL+FSEK+A W+K+S R+ V D
Sbjct: 128 LSPSHSCKEPQISIHEIARGLNGSSISVKVLQAEEESRKLIFSEKEAEWSKFSKRIKVGD 187
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
IFVGR DYGAF+HL FPDG+Y W G +++K+
Sbjct: 188 IFVGRVGSTEDYGAFVHLLFPDGIY---------STLW--------FYGCGFLLKIKIKT 230
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
R+KSR+TLSIKQLEEDPLLETL+KVIPQDGSV D M++ +SNTIEPLPGL I +
Sbjct: 231 QCRQKSRMTLSIKQLEEDPLLETLDKVIPQDGSVGLD--PMATDSSNTIEPLPGLEVIIQ 288
Query: 176 ELLQEDG 182
ELL+EDG
Sbjct: 289 ELLREDG 295
>gi|326490501|dbj|BAJ84914.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 369
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 140/187 (74%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP+H CK+P++ I ++ K L GS +SVKV++ANE KKLVFSEKDA W+ YSS+V +
Sbjct: 115 LSPAHWCKDPKRPIQDVTKDLVGSSVSVKVVEANEAEKKLVFSEKDASWSLYSSQVKIGG 174
Query: 61 IFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I+ G YGAF+HL+FPDG YHLTGLVH+SEVSWDL+QD++D L EGD V+V V+
Sbjct: 175 IYDGIVGSVFHYGAFVHLQFPDGNYHLTGLVHISEVSWDLVQDVQDFLTEGDTVKVIVVN 234
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+D EKSRI LSI+QLEEDPLLETL+K+IP + + D+ + SS IE LPGL I
Sbjct: 235 VDAEKSRIGLSIRQLEEDPLLETLDKIIPLEPDLSPDAEAASSPPE--IELLPGLDGICN 292
Query: 176 ELLQEDG 182
ELLQEDG
Sbjct: 293 ELLQEDG 299
>gi|116789895|gb|ABK25430.1| unknown [Picea sitchensis]
Length = 381
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 138/190 (72%), Gaps = 15/190 (7%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
MSPS K+ K+I E AK L GS +S+KVI+ +EE L+FSEK A+W K+S +N D
Sbjct: 129 MSPSLLLKDRSKTISESAKDLIGSTLSLKVIEVSEEENMLIFSEKQAMWEKFS--INEGD 186
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+F GR +GAF++LRFPDG Y++ GLVH+SEVSWDL++D+RDIL +GD+VRVKVI+
Sbjct: 187 VFEGRVSSVTKFGAFVNLRFPDGGYYVDGLVHISEVSWDLVRDVRDILKKGDDVRVKVIQ 246
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI---EPLPGLGA 172
I+ EKSR+ SIKQL+ DPL ETL+ ++PQ+ D+ ++ +S ++ + EPLP L
Sbjct: 247 INVEKSRLAFSIKQLQADPLFETLDTLMPQE-----DTLNLGTSTADGVVPSEPLPDLEQ 301
Query: 173 IFEELLQEDG 182
I +ELLQE+G
Sbjct: 302 ICKELLQEEG 311
>gi|168056001|ref|XP_001780011.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668616|gb|EDQ55220.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 298
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 12/187 (6%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
M K+ K++ EIAK L G ++SVK+I+ NE ++L+FSE+ AV + V
Sbjct: 49 MDSGRIPKDGSKALAEIAKELVGDLVSVKMIEVNESERRLIFSERQAVLEENLRLVEEGS 108
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
++ G+ D+GAF+ L PDG ++GLVH+SE+SWD +++ RD+L EG VRVKVI+
Sbjct: 109 VYNGKVNSVTDFGAFVDLALPDGTSSVSGLVHISELSWDPVRNPRDLLEEGQMVRVKVIQ 168
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+D+E+ R+ LSIKQLE DPLLETL+ ++P V D+ + +S LPGL I E
Sbjct: 169 LDKERKRLALSIKQLETDPLLETLDTLMPVQTQVKQDAELIGTS-------LPGLEQICE 221
Query: 176 ELLQEDG 182
ELL E+G
Sbjct: 222 ELLNEEG 228
>gi|302780185|ref|XP_002971867.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
gi|302781232|ref|XP_002972390.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
gi|300159857|gb|EFJ26476.1| hypothetical protein SELMODRAFT_97537 [Selaginella moellendorffii]
gi|300160166|gb|EFJ26784.1| hypothetical protein SELMODRAFT_96268 [Selaginella moellendorffii]
Length = 297
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 121/187 (64%), Gaps = 7/187 (3%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+S + ++ K++ ++ K L G + V VI+A+ + +KLVFSE+ A+W+++ S++ + +
Sbjct: 43 LSLARLPRDTSKTVMDVGKELIGKSVPVLVIEADRKKRKLVFSERKALWSQFGSKIQIGN 102
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+ G+ DYGAF+ +R+ DG Y GLVHV E+SWD + + RD+L+ G +V+VKV
Sbjct: 103 VLDGQVTGIVDYGAFVDIRYADGTYPAVGLVHVKEISWDTVTNPRDVLSVGQDVKVKVTG 162
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
ID E R+ LSI+QLE DPL+ETL+ ++P+D S SS N+ PLPG+ I E
Sbjct: 163 IDEESMRLALSIRQLEPDPLMETLDTLMPKDSSTEPGSSDSDEQLLNS--PLPGIDKICE 220
Query: 176 ELLQEDG 182
EL +E G
Sbjct: 221 ELEKESG 227
>gi|255638100|gb|ACU19364.1| unknown [Glycine max]
Length = 115
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 86/102 (84%), Gaps = 5/102 (4%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
+SP H+ KEP+KSI EIA+GL GSI+SVKVI A+E+ KKL+FSEK+A W+KYS +VNV D
Sbjct: 9 LSPVHASKEPEKSIQEIAQGLIGSIMSVKVILADEDNKKLIFSEKEAAWSKYSKQVNVGD 68
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 97
IF R DYGAF+HLRFPDGLYHLTGL+HVSEVSWDLIQ
Sbjct: 69 IFEVRVGYVEDYGAFVHLRFPDGLYHLTGLIHVSEVSWDLIQ 110
>gi|168030832|ref|XP_001767926.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680768|gb|EDQ67201.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 299
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 110/187 (58%), Gaps = 10/187 (5%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED 60
M ++ +S+ E A+ L G ISVK+I+ANE ++L+FSEK AV +
Sbjct: 48 MDQGRLLRDSSRSLSEFAEELVGDFISVKIIEANETTRRLIFSEKQAVLEANLRLLEEGL 107
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
++ G+ D+GAF+ + PDG + GLV SE+SW+ +++ RDI G VRVK+++
Sbjct: 108 VYEGKVNSVTDFGAFVDVVLPDGTSSVRGLVRTSELSWNPVRNPRDICEIGQSVRVKILQ 167
Query: 116 IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+D+EKS + LSIKQL++DP LET +K +P + + S S LPGL I E
Sbjct: 168 LDKEKSHLYLSIKQLQDDPRLETPDKSMPVQSQEPKEQGATLSRTS-----LPGLQQICE 222
Query: 176 ELLQEDG 182
ELL E+G
Sbjct: 223 ELLNEEG 229
>gi|384249652|gb|EIE23133.1| nucleic acid-binding protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 86/138 (62%), Gaps = 5/138 (3%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 73
+GL G +S KVIQ N ++LV SE+ + + ++ + D+ G DYGAF+ L
Sbjct: 59 EGLVGQAVSAKVIQVNIPSRQLVLSEQATMVEQLAASLQTGDVVEGIVTRTTDYGAFVSL 118
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
R PDG H GL+H+SE+SWD I D++ G V KVIK+D+EK I LS+KQ+E D
Sbjct: 119 RSPDGNLHGAGLIHISELSWDKIMTPEDVVQPGSLVNCKVIKVDKEKLHINLSLKQMEGD 178
Query: 134 PLLETLEKVIPQDGSVIS 151
PLLE L+ ++P D S ++
Sbjct: 179 PLLENLDGLLPLDTSSVT 196
>gi|255073571|ref|XP_002500460.1| predicted protein [Micromonas sp. RCC299]
gi|226515723|gb|ACO61718.1| predicted protein [Micromonas sp. RCC299]
Length = 294
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 17/170 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-----VEDIFVGRDYGAFIHLRFPD 77
G +I VKV N+ KK+V SE+ V + R+ + D+GAF+ L D
Sbjct: 63 GKVIEVKVTDVND--KKIVVSERALVQERGVKRLKPGVRASAQVVSLSDFGAFVELSQDD 120
Query: 78 GLY-HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI----DREKSRITLSIKQLEE 132
L GL+H+SE+SW + RDIL GDEV VKV+ + R +R+T S+KQL+
Sbjct: 121 PQAPRLEGLIHISELSWSRVAHPRDILRVGDEVDVKVLDVAPAEGRRPARVTFSLKQLQA 180
Query: 133 DPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDG 182
DPLLETL+ ++P ++ + PLPGL I LL E+G
Sbjct: 181 DPLLETLDTIMP-----VAMPEPSVDEDELLDTPLPGLMDICSNLLTEEG 225
>gi|145344629|ref|XP_001416831.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
lucimarinus CCE9901]
gi|144577057|gb|ABO95124.1| Putative mitochondrial ribosomal protein S1 [Ostreococcus
lucimarinus CCE9901]
Length = 352
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 13/166 (7%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV---NVEDIFVGR--DYGAFIHLRFPD 77
G +I VK++ + K++V SE+ + + S ++ +V+++ V D+GAF+ +
Sbjct: 123 GKLIDVKLV--DHSSKRIVVSERALLQERASEKLPVGDVKEVVVTSLSDFGAFVEVCDGQ 180
Query: 78 G-LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
G L GLVH+SE+SW+ I RD + G VKV++++ E RI SIKQ + DPL+
Sbjct: 181 GEASGLEGLVHISEISWNRISHPRDAVKVGQREFVKVLEVNDETGRINFSIKQTQADPLM 240
Query: 137 ETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDG 182
ETLE ++P V S+ + + I PLPGL I LL+EDG
Sbjct: 241 ETLETIMP----VTMPEPSIDEDDLSEI-PLPGLPDICSSLLKEDG 281
>gi|159475150|ref|XP_001695686.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158275697|gb|EDP01473.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 360
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 8/125 (6%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G I ++I A+ K+LV SE+ + RV+ D+ G DYGAFI ++
Sbjct: 138 LIGQQIKARIITADIARKELVLSERQVAAAEALGRVSEGDVIEGVVTGVEDYGAFIQIK- 196
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
GL + GLVH SEV+W I + ++L G EVR KV+ +D R+ LSIKQL DPL
Sbjct: 197 --GLPDVFGLVHKSEVTWARILTVDEVLKLGQEVRAKVLSVDVANCRLALSIKQLTTDPL 254
Query: 136 LETLE 140
+L+
Sbjct: 255 RMSLD 259
>gi|406997617|gb|EKE15647.1| RNA binding S1 protein [uncultured bacterium]
Length = 447
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 18/146 (12%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-- 65
+ I E+ K + G I V++I A+++ +KL+ SE+ A K S+++V DI G
Sbjct: 191 KNKILELLKKIIGQEIRVRIIDADKDSEKLIVSERAASSEKEKEVISKLDVGDIIEGEIS 250
Query: 66 ---DYGAFIHLRFP-------DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
D+GAF+ P DG +L GLVH+SE++W LI++ RDI+ GD+VR K+I
Sbjct: 251 GVVDFGAFVKFPSPIKNSAGNDG-DNLEGLVHISELAWQLIENPRDIVKTGDKVRAKIIG 309
Query: 116 IDREKSRITLSIKQLEEDPLLETLEK 141
ID +RI+LS+K L +DP E +K
Sbjct: 310 ID--DTRISLSMKALAKDPWSEIEKK 333
>gi|308801265|ref|XP_003077946.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
(ISS) [Ostreococcus tauri]
gi|116056397|emb|CAL52686.1| Predicted RNA-binding polyribonucleotide nucleotidyltransferase
(ISS) [Ostreococcus tauri]
Length = 345
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 66 DYGAFIHLRFPDGLYH-LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+GAF+ + G L GLVH+SE+SW+ I RD + G VKV++++ E RI
Sbjct: 178 DFGAFVEVCDGQGAASGLEGLVHISEISWNRISHPRDAVKVGQREFVKVLEVNGETGRIN 237
Query: 125 LSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDG 182
SIKQ + DPL+ETLE ++P V S+ + + I PLPGL I LL+E+G
Sbjct: 238 FSIKQTQADPLMETLETIMP----VTMPEPSIDEDDLSEI-PLPGLPDICSSLLKEEG 290
>gi|163848394|ref|YP_001636438.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222526319|ref|YP_002570790.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669683|gb|ABY36049.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222450198|gb|ACM54464.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 391
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 19/128 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNVEDIFVGR-----DYGAFIHL 73
I +KVI+ + E +LV SE+ A W K + + D+ VGR ++GAFI L
Sbjct: 174 IPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQPGDVLVGRVNQLTNFGAFIDL 233
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL H+SE+SW + R++L G EV+V V++IDRE+ RI LSI+QL+ +
Sbjct: 234 GGADGL------AHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQNN 287
Query: 134 PLLETLEK 141
P ET+++
Sbjct: 288 P-WETIDQ 294
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ + E +++ S + + W R + + G +GAF+ +
Sbjct: 260 GQEVKVVVVEIDRERERIGLSIRQLQNNPWETIDQRYTLGQLVTGPVTNVTPFGAFVQVE 319
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+H SE+ D RDIL G V +VI +DR++ R+ LS++++ E+
Sbjct: 320 -----EAVEGLIHASELDADPQAQPRDILQPGQIVTARVISLDRQRQRMGLSLRRIGEN 373
>gi|412990262|emb|CCO19580.1| 30S ribosomal protein S1 [Bathycoccus prasinos]
Length = 437
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 37/208 (17%)
Query: 7 CKEPQKSI--HEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV---EDI 61
CK + + E+ K G++I VK ++ K++V SEK + ++ V + +
Sbjct: 165 CKTTKAELTEAEVMKQQIGNLIDVKFVEVTP--KRVVCSEKSLIQENAEKKLPVGTQQRV 222
Query: 62 FVGR--DYGAFI----------------HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
V D+GAF+ L P GL GL+H+SE+SW+ + RD+
Sbjct: 223 VVTNLSDFGAFVEVINNDNNSSSSQEQDQLLSPVGL---EGLIHISELSWNKVAHPRDVC 279
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS--DSSSMSSS-- 159
GDE+ VKV+++ R+ S KQ+ +DPL+ETL+ ++P +S DS S +S
Sbjct: 280 RVGDELEVKVLEVANSGQRVNFSAKQMLDDPLMETLDTIMPVTMPELSFDDSDSAFASGD 339
Query: 160 -----NSNTIEPLPGLGAIFEELLQEDG 182
+ LPGL I ELL EDG
Sbjct: 340 FDGEEGTKMEASLPGLPRICAELLSEDG 367
>gi|374313214|ref|YP_005059644.1| 30S ribosomal protein S1 [Granulicella mallensis MP5ACTX8]
gi|358755224|gb|AEU38614.1| ribosomal protein S1 [Granulicella mallensis MP5ACTX8]
Length = 654
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 18/134 (13%)
Query: 20 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE-------DIFVG-----RDY 67
G G+ I V+VI+ N++ +V S K+ + +++ V +F G DY
Sbjct: 229 GYIGTEIEVRVIKLNKKRGNVVISRKELLEEDQNAKKAVTLSTLEEGSVFTGVVKNLTDY 288
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAF+ + DGL H+T ++SW + RD++N GDE++VKV+K D+EK R++L
Sbjct: 289 GAFVDMGGLDGLLHIT------DMSWGRLTHPRDLVNVGDEIQVKVLKFDKEKQRVSLGF 342
Query: 128 KQLEEDPLLETLEK 141
KQL DP L+ E+
Sbjct: 343 KQLTPDPWLDATER 356
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 20/142 (14%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVN 57
M+ S K P K + G I+ ++ N +++ K D W +
Sbjct: 392 MTWSKRMKHPSKMVK------PGDIVDTIILSVNPNDRRISLGMKQLQDNPWEALEDKYP 445
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRV 111
+ + GR D+GAFI + DG+ GLVHVS +SW I+ ++L +G++V+
Sbjct: 446 IGAVIEGRVRNLTDFGAFIEIE--DGI---DGLVHVSNLSWTKRIKHPSEVLKKGEKVKA 500
Query: 112 KVIKIDREKSRITLSIKQLEED 133
V+ ++ E R++L +KQL+ D
Sbjct: 501 IVLGVEPENRRLSLGVKQLQPD 522
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ ++E +++ K W + R + GR DYGAF+ L
Sbjct: 321 GDEIQVKVLKFDKEKQRVSLGFKQLTPDPWLDATERYPIGAQVRGRVLSVTDYGAFVELE 380
Query: 75 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE++W ++ ++ GD V ++ ++ RI+L +KQL+++
Sbjct: 381 -----QGIEGLVHVSEMTWSKRMKHPSKMVKPGDIVDTIILSVNPNDRRISLGMKQLQDN 435
Query: 134 PLLETLEKVIPQDGSVI 150
P E LE P G+VI
Sbjct: 436 P-WEALEDKYPI-GAVI 450
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 102
VW+ + ++ V D+ G+ +GAF+ + + GL HVSE + + I
Sbjct: 523 VWDTFFAQHRVGDVIKGKTLRTAQFGAFVEI-----AEGVEGLCHVSEAVDETGKQI--T 575
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L GDE K++K+++E+ ++ LSIK + E+
Sbjct: 576 LEVGDEHEFKIVKMNQEEKKVGLSIKAVGEE 606
>gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
Length = 408
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYG 68
+ G I V VI+ + E ++L+ SE+ + + + + +I GR D+G
Sbjct: 181 MVGEEIDVCVIEVDRERRRLILSERVATPETRETLKERVIETLAEGEIRTGRVTSLADFG 240
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+++ DGL VH+SE+SWD I+ ++L G EV+VKVI +DREK RI LSI+
Sbjct: 241 AFVNISGADGL------VHLSEISWDRIKHPSEVLQVGQEVKVKVISVDREKRRIGLSIR 294
Query: 129 QLEEDPLLETLEK 141
Q + DP LE K
Sbjct: 295 QTQGDPWLERAAK 307
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI + E +++ S + W + +++ V + G +GAF L
Sbjct: 272 GQEVKVKVISVDREKRRIGLSIRQTQGDPWLERAAKYQVGMLVEGVITRLTKFGAFAKLD 331
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GL+H+SE+S I+ +++L EGD+V ++++KID E RI LS+++++
Sbjct: 332 -----EDIEGLIHISEISEKRIEHPKEVLKEGDKVTLRIVKIDPENHRIGLSLRRVD 383
>gi|295111344|emb|CBL28094.1| Ribosomal protein S1 [Synergistetes bacterium SGP1]
Length = 516
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 24/178 (13%)
Query: 10 PQKSIHEIAKG-----LTGSIISVKVIQANEEMKKLVFSEKDAVWN-------KYSSRVN 57
P I E +G VK ++ ++ +LVFS KD V K+ V+
Sbjct: 156 PMSHIAENGRGSNLSSFIDETFEVKPLERDKRKHRLVFSRKDLVAKENAEKRAKFYDEVH 215
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 112
D+ G D+G F++L+ + GLVHVSE++W IRD+ +GD+V VK
Sbjct: 216 EGDVLEGEVSSITDFGIFVNLKGA-----MDGLVHVSEITWKRNVRIRDLYKKGDKVTVK 270
Query: 113 VIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
VI +D+EK RI+LSIKQ++ DP L E++ G V+ + + +E PG+
Sbjct: 271 VIGLDKEKDRISLSIKQVQGDPWLTAGERI--HKGDVMKGVVTNVTDFGAFVELEPGI 326
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VKVI ++E ++ S K W R++ D+ G D+GAF+ L
Sbjct: 264 GDKVTVKVIGLDKEKDRISLSIKQVQGDPWLTAGERIHKGDVMKGVVTNVTDFGAFVELE 323
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI----DREKSRITLSIKQL 130
P + GL+H+ ++SW I+ RD +G EV V V+ I D +K RI+L KQL
Sbjct: 324 -PG----IEGLIHIGDISWARIKHPRDTFRKGQEVEVLVMDIALSEDPKKCRISLGYKQL 378
Query: 131 EEDP 134
DP
Sbjct: 379 -NDP 381
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ + + L+H+S++S ++ D+L+EG EV ++I+++ E+ R+ L
Sbjct: 404 EFGAFV-----EAEEGVEALIHISQLSNRRVEKPGDVLHEGQEVVARMIEVNPEQRRMRL 458
Query: 126 SIKQLEE 132
S+ LEE
Sbjct: 459 SLSALEE 465
>gi|219848025|ref|YP_002462458.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542284|gb|ACL24022.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 397
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 19/128 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNVEDIFVGR-----DYGAFIHL 73
I +KVI+ + E +LV SE+ A W K + + D+ VG+ ++GAFI L
Sbjct: 174 IPLKVIEVDRERNRLVLSERAATQEWRKAQKHRLLTELQPGDVLVGKVNQLTNFGAFIDL 233
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL H+SE+SW + R++L G EV+V V++IDRE+ RI LSI+QL+++
Sbjct: 234 GGADGL------AHISELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQDN 287
Query: 134 PLLETLEK 141
P ET+++
Sbjct: 288 P-WETIDQ 294
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ + E +++ S + D W R + + G +GAF+ +
Sbjct: 260 GQEVKVVVVEIDRERERIGLSIRQLQDNPWETIDQRYTLGQLVTGPVTNVTPFGAFVQVE 319
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+H SE++ D RD+L G V +VI +DR++ R+ LS++++ +D
Sbjct: 320 -----EAVEGLIHASELTADPQAQPRDVLQPGQIVTARVISLDRQRQRMGLSLRRINDD 373
>gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
Length = 393
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 22/141 (15%)
Query: 6 SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNV 58
+ +E Q+++ + G I +KVI+ + + +LV SE+ A W K + +
Sbjct: 157 AAEERQQALQR----MVGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP 212
Query: 59 EDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113
DI GR ++GAFI L DGL H+SE+SW + R++L+ G EVRV V
Sbjct: 213 GDILTGRVNQLTNFGAFIDLGGADGL------AHISELSWQRVNHPREVLSPGQEVRVMV 266
Query: 114 IKIDREKSRITLSIKQLEEDP 134
++ID E+ RI LS+++L+ +P
Sbjct: 267 VEIDAERERIGLSLRRLQPNP 287
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ + E +++ S + W+ R ++ + G +GAF+ +
Sbjct: 259 GQEVRVMVVEIDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIE 318
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ--LEE 132
+ GL+H SE+ D RD+L G + ++I +D+++ R+ LS++ +E
Sbjct: 319 -----EAVEGLIHASELDADPQAQPRDLLQPGQIITARIISLDKQRQRMGLSLRHNGADE 373
Query: 133 DPLLETLEKVIP 144
ET E P
Sbjct: 374 SGATETPETPAP 385
>gi|302838251|ref|XP_002950684.1| hypothetical protein VOLCADRAFT_104808 [Volvox carteri f.
nagariensis]
gi|300264233|gb|EFJ48430.1| hypothetical protein VOLCADRAFT_104808 [Volvox carteri f.
nagariensis]
Length = 356
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
LTG + +V+ A+ K+LV SE+ + R+ + DYGAF+ ++
Sbjct: 138 LTGQQLKARVVTADASRKELVLSERQVAAAEALRRIEPGAVLTCVVTAVEDYGAFVQVK- 196
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
G+ + GLVH SEVSWD I + +++ G EV KV+ +D R+TLS+KQ+ DPL
Sbjct: 197 --GMPEVVGLVHKSEVSWDRIMTVDQVVSIGQEVVAKVLSVDANNVRLTLSMKQMSTDPL 254
Query: 136 LETLE 140
+L+
Sbjct: 255 RLSLD 259
>gi|37520556|ref|NP_923933.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
gi|35211550|dbj|BAC88928.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
Length = 320
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 19/144 (13%)
Query: 4 SH-SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF 62
SH S +EP++ L G + +K ++ +EE +LV S + A+ + +++ +
Sbjct: 150 SHLSTREPKEE-------LIGEELPLKFLEVDEERNRLVLSHRRALVERRMNKLEAGQVV 202
Query: 63 VGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117
+GR YGAFI + ++GL+H+SE+S D I+ + N GDEV+V VI +D
Sbjct: 203 IGRVRGIKPYGAFIDI------GGVSGLLHISEISHDHIETPHSVFNVGDEVKVMVIDLD 256
Query: 118 REKSRITLSIKQLEEDPLLETLEK 141
E+ RI+LS KQLEE P T +K
Sbjct: 257 AERGRISLSTKQLEETPGAMTQDK 280
>gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 388
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 22/141 (15%)
Query: 6 SCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNV 58
+ +E Q+++ + G I +KVI+ + + +LV SE+ A W K + +
Sbjct: 157 AAEERQQALQR----MVGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP 212
Query: 59 EDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113
DI GR ++GAFI L DGL H+SE+SW + R++L+ G EVRV V
Sbjct: 213 GDILTGRVNQLTNFGAFIDLGGADGL------AHISELSWQRVNHPREVLSPGQEVRVMV 266
Query: 114 IKIDREKSRITLSIKQLEEDP 134
++ID E+ RI LS+++L+ +P
Sbjct: 267 VEIDAERERIGLSLRRLQPNP 287
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ + E +++ S + W+ R ++ + G +GAF+ +
Sbjct: 259 GQEVRVMVVEIDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIE 318
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+H SE+ D RD+L G + ++I +D+++ R+ LS+++ D
Sbjct: 319 -----EAVEGLIHASELDADPQAQPRDLLQPGQIITARIISLDKQRQRMGLSLRRNSAD 372
>gi|407003818|gb|EKE20342.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 404
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 16/145 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-- 65
+ I E+ K L G + V+++ A+ E +KL+ SE+ A K S++ D+ G
Sbjct: 190 KNKILELLKKLVGKEMLVRILDADRESEKLIVSERAASSEKEKEVISKLQAGDVIEGEIS 249
Query: 66 ---DYGAFIHLRFPDGLY------HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
D+GAF+ P + L GLVH+SE++W LI D R ++ GD+V+ K+I I
Sbjct: 250 GVVDFGAFVKFLPPAKMASDRESDKLEGLVHISELAWQLIDDPRTVVKTGDKVKAKIIGI 309
Query: 117 DREKSRITLSIKQLEEDPLLETLEK 141
D +RI+LS+K L +DP E EK
Sbjct: 310 D--DTRISLSMKALAKDPWSEIAEK 332
>gi|320108571|ref|YP_004184161.1| 30S ribosomal protein S1 [Terriglobus saanensis SP1PR4]
gi|319927092|gb|ADV84167.1| ribosomal protein S1 [Terriglobus saanensis SP1PR4]
Length = 636
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 18/131 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE-------DIFVG-----RDYGAF 70
G + V+VI+ N++ +V S K+ + + +SR +V I G DYGAF
Sbjct: 219 GQQLDVRVIKLNKKRGNVVISRKEILEEEQNSRKDVTLQTLEEGSIMTGVVKNLTDYGAF 278
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL H+T ++SW + RD++ GDE++VKV+K D+EK R++L KQL
Sbjct: 279 VDLGGLDGLLHIT------DMSWGRLTHPRDLVQVGDEIQVKVLKFDKEKQRVSLGFKQL 332
Query: 131 EEDPLLETLEK 141
DP L+ +E+
Sbjct: 333 TPDPWLDAIER 343
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 15/103 (14%)
Query: 37 MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 91
MK+L +D W + ++ + +I GR D+GAFI + DG+ GLVHVS +
Sbjct: 416 MKQL----QDNPWEQLENKYPIGEIVEGRVRNLTDFGAFIEIE--DGI---DGLVHVSNL 466
Query: 92 SW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
SW I+ ++L +G++VR V+ ++ E R++L +KQLE D
Sbjct: 467 SWTKRIKHPSEVLKKGEKVRAVVLGVEPENRRLSLGVKQLEPD 509
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ ++E +++ K W R + GR DYGAF+ L
Sbjct: 308 GDEIQVKVLKFDKEKQRVSLGFKQLTPDPWLDAIERYPIGAQVKGRILSVTDYGAFVELE 367
Query: 75 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE++W ++ ++ GDE ++ ++ RI+L +KQL+++
Sbjct: 368 -----QGIEGLVHVSEMTWSKRMKHPSKMVKPGDEADTIILAVNPTDRRISLGMKQLQDN 422
Query: 134 PLLETLEKVIP 144
P E LE P
Sbjct: 423 P-WEQLENKYP 432
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI 102
VW+ + ++ V D+ G+ +G F+ + + GL HVSE +L Q +
Sbjct: 510 VWDTFFAQHRVGDVVKGKVLRSAQFGTFVEI-----AEGVEGLCHVSEAVNELHQPV--T 562
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L G E+ K++K+ +E+ ++ LS++ + E+
Sbjct: 563 LEPGQEMEFKIVKMSQEEKKVGLSLRGIGEE 593
>gi|403253622|ref|ZP_10919923.1| ribosomal protein S1 [Thermotoga sp. EMP]
gi|418045501|ref|ZP_12683596.1| RNA binding S1 domain protein [Thermotoga maritima MSB8]
gi|351676386|gb|EHA59539.1| RNA binding S1 domain protein [Thermotoga maritima MSB8]
gi|402811156|gb|EJX25644.1| ribosomal protein S1 [Thermotoga sp. EMP]
Length = 543
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGRDY 67
+KS+ E+ G ++ V+VI ++E +KL S + A W R NV ++ G+
Sbjct: 310 RKSLEEVVS--VGDLVKVEVINVDKENRKLTLSYRKAKGDPWENIEDRYNVNNVVTGKVT 367
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
G F + + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSI
Sbjct: 368 GIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSI 427
Query: 128 KQLEEDPLLETLEKVIP 144
K+ +E+P L+++ P
Sbjct: 428 KRTQENPWERALKELKP 444
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G + SE+S+D DI+ G + K+I++D+ K + LS+K+L DP E +E+
Sbjct: 209 VRGFIPRSELSYDTRISPEDIVKPGQNITAKIIELDKVKKNVILSLKKLMPDP-WEKVEE 267
Query: 142 VIPQDGSVIS 151
P G V+S
Sbjct: 268 KYPV-GKVVS 276
>gi|15644630|ref|NP_229244.1| ribosomal protein S1 [Thermotoga maritima MSB8]
Length = 543
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGRDY 67
+KS+ E+ G ++ V+VI ++E +KL S + A W R NV ++ G+
Sbjct: 310 RKSLEEVVS--VGDLVEVEVINVDKENRKLTLSYRKAKGDPWENIEDRYNVNNVVTGKVT 367
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
G F + + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSI
Sbjct: 368 GIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSI 427
Query: 128 KQLEEDPLLETLEKVIP 144
K+ +E+P L+++ P
Sbjct: 428 KRTQENPWERALKELKP 444
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G + SE+S+D DI+ G + K+I++D+ K + LS+K+L DP E +E+
Sbjct: 209 VRGFIPRSELSYDTRISPEDIVKPGQNITAKIIELDKVKKNVILSLKKLMPDP-WEKVEE 267
Query: 142 VIPQDGSVIS 151
P G V+S
Sbjct: 268 KYPV-GKVVS 276
>gi|322437186|ref|YP_004219398.1| 30S ribosomal protein S1 [Granulicella tundricola MP5ACTX9]
gi|321164913|gb|ADW70618.1| ribosomal protein S1 [Granulicella tundricola MP5ACTX9]
Length = 671
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 18/134 (13%)
Query: 20 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE-------DIFVGR-----DY 67
G G+ I V+VI+ N++ +V S K+ + +++ V + G DY
Sbjct: 232 GYVGTEIEVRVIKLNKKRGNVVISRKELLEEDQNAKKAVTLATLEEGSVLTGTVKNLTDY 291
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAF+ L DGL H+T ++SW + RD++N GDE++VKV+K D++K R++L
Sbjct: 292 GAFVDLGGLDGLLHIT------DMSWGRLTHPRDLVNVGDEIQVKVLKFDKDKQRVSLGF 345
Query: 128 KQLEEDPLLETLEK 141
KQL DP L+ E+
Sbjct: 346 KQLTPDPWLDATER 359
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ +++ +++ K W + R + GR DYGAF+ L
Sbjct: 324 GDEIQVKVLKFDKDKQRVSLGFKQLTPDPWLDATERYPIGAQVRGRVLSVTDYGAFVELE 383
Query: 75 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE++W ++ ++ GDEV ++ ++ RI+L +KQL+++
Sbjct: 384 -----QGIEGLVHVSEMTWSKRMKHPSKLVKPGDEVDTIILSVNPNDRRISLGMKQLQDN 438
Query: 134 PLLETLEKVIPQDGSVI 150
P E LE P G++I
Sbjct: 439 P-WEALEDKYPT-GAII 453
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 15/103 (14%)
Query: 37 MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 91
MK+L + +A+ +KY + +E GR D+GAFI + DG+ GLVHVS +
Sbjct: 432 MKQLQDNPWEALEDKYPTGAIIE----GRVRNLTDFGAFIEIE--DGI---DGLVHVSNL 482
Query: 92 SW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
SW I+ ++L +G++VR V+ ++ E R++L +KQL+ D
Sbjct: 483 SWTKRIKHPSEVLKKGEKVRAIVLGVEPENRRLSLGVKQLQPD 525
>gi|406949320|gb|EKD79835.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 366
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 14/130 (10%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEK-----DAVWNKYSS--RVNVEDIFVGR-----D 66
+ L G I+VK I+ + E +L+FSEK A+ ++ S+ V V + F G
Sbjct: 154 QALVGKTINVKPIEVDREKNRLIFSEKHVSEAGAMASRESALKEVKVGNTFAGSVTGVLS 213
Query: 67 YGAFIHLRFPDGLYHLT--GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
+GAF+ + G +T GLVH+SE+SW+ ++DI L GD+V VKV+ ++ ++
Sbjct: 214 FGAFVAVPVVAGKETITVEGLVHISEISWEKVEDIHKYLKVGDKVEVKVLGVEEGTGKLN 273
Query: 125 LSIKQLEEDP 134
LSIKQL+ DP
Sbjct: 274 LSIKQLQSDP 283
>gi|302783342|ref|XP_002973444.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
gi|300159197|gb|EFJ25818.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
Length = 434
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 74/119 (62%), Gaps = 12/119 (10%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
LTG + VKV++ +EE K+LV S + A+ ++ + + + VG + YGAFI L
Sbjct: 244 LTGRELPVKVLEVDEEQKRLVVSHRKALAENQAT-LGIGSVVVGTVQTIKPYGAFIDL-- 300
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
LTGL+HVS++S D I + ++L+ GD+++V V+ D+++ RI+LS K+LE P
Sbjct: 301 ----GGLTGLLHVSQISHDRITTVENVLSPGDKLKVMVLSHDKDRGRISLSTKKLEPTP 355
>gi|302823925|ref|XP_002993610.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
gi|300138538|gb|EFJ05302.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
Length = 438
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 74/119 (62%), Gaps = 12/119 (10%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
LTG + VKV++ +EE K+LV S + A+ ++ + + + VG + YGAFI L
Sbjct: 248 LTGRELPVKVLEVDEEQKRLVVSHRKALAENQAT-LGIGSVVVGTVQTIKPYGAFIDL-- 304
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
LTGL+HVS++S D I + ++L+ GD+++V V+ D+++ RI+LS K+LE P
Sbjct: 305 ----GGLTGLLHVSQISHDRITTVENVLSPGDKLKVMVLSHDKDRGRISLSTKKLEPTP 359
>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
Length = 543
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDY 67
+KS+ E+ G ++ V+VI ++E +KL S K A W R NV ++ G+
Sbjct: 310 RKSLEEVVS--AGDLVKVEVINVDKENRKLTLSYKKAKGDPWENIEDRYNVNNVVTGKVT 367
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
G F + + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSI
Sbjct: 368 GIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSI 427
Query: 128 KQLEEDPLLETLEKV 142
K+ +E+P L+++
Sbjct: 428 KRTQENPWERALKEL 442
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G + SE+S+D DI+ G + K+I++D+EK + LS+K+L DP E +E+
Sbjct: 209 VRGFIPRSELSYDTRISPEDIVKPGQNITAKIIELDKEKKNVILSLKRLMPDP-WEKVEE 267
Query: 142 VIP----QDGSVIS 151
P +G VIS
Sbjct: 268 KYPVGKVVNGEVIS 281
>gi|309790392|ref|ZP_07684957.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
DG-6]
gi|308227584|gb|EFO81247.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
DG6]
Length = 381
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 18/121 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV--WNKYS-----SRVNVEDIFVGR-----DYGAFIHL 73
I +KVI+ + E +LV SE+ A W K + + D+ GR ++GAFI L
Sbjct: 166 IPLKVIEVDRERNRLVLSERSATQEWRKAQKQRLLTELQPGDVLSGRVNQLTNFGAFIDL 225
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL H+SE+SW + R++L+ G EV+V V++IDR++ RI LS++QL+ +
Sbjct: 226 GGADGL------AHISELSWQRVNHPREVLSPGQEVKVVVVEIDRDRERIGLSLRQLQAN 279
Query: 134 P 134
P
Sbjct: 280 P 280
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF+ + + GL+H SE+ D RD+L G +V KVI +DR++ R+ LS
Sbjct: 304 FGAFVQVE-----DAVEGLIHASELDVDPQTQPRDVLQPGQQVTAKVISLDRQRQRMGLS 358
Query: 127 IKQLEE 132
++++ E
Sbjct: 359 LRRVSE 364
>gi|406920096|gb|EKD58220.1| RNA binding S1 protein [uncultured bacterium]
Length = 407
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 16/145 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-- 65
+ I E+ K L G I V+++ A+ E +KL+ SE+ A K S++ D G
Sbjct: 189 KNKILELLKKLVGKEILVRILDADRETEKLIVSERAASSEKEKEVISQLKAGDTIEGEIS 248
Query: 66 ---DYGAFIHLRFPDGLY------HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
D+GAF+ P L GLVH+SE++W LI D R I+ GD+V+ ++I I
Sbjct: 249 GVVDFGAFVKFLPPAKADSDRESDKLEGLVHISELAWQLIDDPRSIVKTGDKVKARIIGI 308
Query: 117 DREKSRITLSIKQLEEDPLLETLEK 141
D +RI+LS+K L +DP E EK
Sbjct: 309 D--DTRISLSMKALAKDPWSEIAEK 331
>gi|116623389|ref|YP_825545.1| 30S ribosomal protein S1 [Candidatus Solibacter usitatus Ellin6076]
gi|116226551|gb|ABJ85260.1| SSU ribosomal protein S1P [Candidatus Solibacter usitatus
Ellin6076]
Length = 571
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR--VNVEDIFVG----- 64
+ +H + L G I VK+I+ N +V S K A+ + +SR V ++ +F G
Sbjct: 151 RPVHNL-DALVGQDIPVKIIKLNRRRGNVVVSRKMAIEEEINSRKTVTLDHLFEGAAVTG 209
Query: 65 -----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 119
DYGAFI L DGL +HV+++S+ I ++L G E+ VKV+K DR
Sbjct: 210 TVKNLTDYGAFIDLGGIDGL------LHVTDMSYGRITHPSEMLQVGQEITVKVLKFDRT 263
Query: 120 KSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
K R++L IKQLE DP +E+ P +G VI
Sbjct: 264 KERVSLGIKQLEPDPWDTVIER-YPVNGRVIG 294
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + +++ K W+ R V +GR DYGAF+ L
Sbjct: 250 GQEITVKVLKFDRTKERVSLGIKQLEPDPWDTVIERYPVNGRVIGRVVNVTDYGAFVELE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GL+H+SE++W ++ ++ GD+V V+++ + RI+L +KQLE +
Sbjct: 310 -PG----VEGLIHISEMTWSRRMKHPSKVVKAGDQVEAVVLEVHPKDRRISLGLKQLEPN 364
Query: 134 P 134
P
Sbjct: 365 P 365
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 102
W R +V + GR D+GAFI + +G+ GLVHVS++SW ++ ++
Sbjct: 366 WTTIDQRYSVGSVVEGRVRNMTDFGAFIEIE--EGI---DGLVHVSDLSWTKRVKHPSEV 420
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L +G V+ ++ ID R++L IKQL+ D
Sbjct: 421 LKKGMIVQAVILNIDSSSHRLSLGIKQLQPD 451
>gi|365873627|ref|ZP_09413160.1| ribosomal protein S1 [Thermanaerovibrio velox DSM 12556]
gi|363983714|gb|EHM09921.1| ribosomal protein S1 [Thermanaerovibrio velox DSM 12556]
Length = 499
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 18/128 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVG-----RDYG 68
L G VK+++ + ++LV S + + + SS V+ DI G +G
Sbjct: 166 LVGKTFPVKLVEKDRRKRRLVLSRRSILEEELSSLREDFYANVHEGDILEGDVSSVTSFG 225
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F++L L GLVHV+E+SW +DI+ +GD VRVKVI IDRE +RI+LS+K
Sbjct: 226 VFVNL------GALEGLVHVTELSWQRGAKAKDIVQKGDRVRVKVIGIDRENNRISLSLK 279
Query: 129 QLEEDPLL 136
Q +EDP +
Sbjct: 280 QAQEDPWV 287
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKK--LVFSEKDAVWN----KYSSR--VNVEDIFVGRDYGAFIHLR 74
G + V +++ + E ++ L F + + WN KYS VNV+ + + D+GAF+ L
Sbjct: 343 GQEVEVVILEVDGERRRIGLGFKQLNDPWNNVAEKYSKDQVVNVKVVRLA-DFGAFVELE 401
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ GL+H+S++S ++ D+L EG EV+ K+++++ + RI LS++ LEE+P
Sbjct: 402 --DGV---EGLIHISQLSRQRVEKPSDVLKEGQEVQAKILEVNPAERRIRLSLRALEEEP 456
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI + E ++ S K A W +SR +V G D+GAF+ +
Sbjct: 257 GDRVRVKVIGIDRENNRISLSLKQAQEDPWVNVTSRWSVGQKTKGVVTNLADFGAFVEIE 316
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+H+ ++SW ++ +++L +G EV V ++++D E+ RI L KQL DP
Sbjct: 317 -----PGVEGLIHIGDLSWSRVKHPKEVLRKGQEVEVVILEVDGERRRIGLGFKQL-NDP 370
Query: 135 LLETLEK 141
EK
Sbjct: 371 WNNVAEK 377
>gi|390956265|ref|YP_006420022.1| 30S ribosomal protein S1P [Terriglobus roseus DSM 18391]
gi|390411183|gb|AFL86687.1| SSU ribosomal protein S1P [Terriglobus roseus DSM 18391]
Length = 629
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 18/131 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR--VNVEDIFVG----------RDYGAF 70
G+ + V+VI+ N++ +V S K+ + + ++R V +E + G DYGAF
Sbjct: 216 GTQLDVRVIKLNKKRGNVVISRKEILEEEQNARKSVTLETLEEGAVLTGVVKNLTDYGAF 275
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL H+T ++SW + RD++ GDE++VKV+K D++K R++L KQL
Sbjct: 276 VELGGLDGLLHIT------DMSWGRLTHPRDLVQVGDEIQVKVLKFDKDKHRVSLGFKQL 329
Query: 131 EEDPLLETLEK 141
DP L+ +E+
Sbjct: 330 TPDPWLDAIER 340
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 15/103 (14%)
Query: 37 MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 91
MK+L + + + NKY VE GR D+GAFI + DG+ GLVHVS +
Sbjct: 413 MKQLQDNPWEQLENKYPIGATVE----GRVRNLTDFGAFIEIE--DGI---DGLVHVSNL 463
Query: 92 SW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
SW I+ ++L +G++V+ V+ ++ E R++L +KQLE D
Sbjct: 464 SWTKRIKHPSEVLKKGEKVKAVVLGVEPENRRLSLGVKQLEPD 506
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ +++ ++ K W R + GR DYGAF+ L
Sbjct: 305 GDEIQVKVLKFDKDKHRVSLGFKQLTPDPWLDAIERYPIGAQVKGRVLSVTDYGAFVELE 364
Query: 75 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE++W ++ ++ GDEV ++ ++ RI+L +KQL+++
Sbjct: 365 -----QGIEGLVHVSEMTWSKRMKHPSKMVKPGDEVDTIILAVNPNDRRISLGMKQLQDN 419
Query: 134 PLLETLEKVIPQDGSV 149
P E LE P +V
Sbjct: 420 P-WEQLENKYPIGATV 434
>gi|225873902|ref|YP_002755361.1| 30S ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
gi|225793852|gb|ACO33942.1| ribosomal protein S1 [Acidobacterium capsulatum ATCC 51196]
Length = 637
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 18/131 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAF 70
G I V+VI+ N++ +V S K+ + + +++ + I G DYGAF
Sbjct: 232 GQPIEVRVIKLNKKRGNVVVSRKEILEEEQTAKRSETLEHLEEGSILTGTVKNLTDYGAF 291
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL H+T ++SW + RD++N GDE++VKV+K DR+K R++L KQL
Sbjct: 292 VDMGGIDGLLHIT------DMSWGRLTHPRDLVNVGDEIQVKVLKFDRDKQRVSLGFKQL 345
Query: 131 EEDPLLETLEK 141
DP L+ E+
Sbjct: 346 TPDPWLDATER 356
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + + +++ K W + R V GR DYG+F+ L
Sbjct: 321 GDEIQVKVLKFDRDKQRVSLGFKQLTPDPWLDATERYPVGARVRGRVLSVTDYGSFVELE 380
Query: 75 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE++W ++ +L GDEV V+ ++ RI+L +KQL+++
Sbjct: 381 -----QGIEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDRRISLGMKQLQDN 435
Query: 134 PLLETLEKVIPQDGSV 149
P ETL P +V
Sbjct: 436 P-WETLGDKYPTGATV 450
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 15/103 (14%)
Query: 37 MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 91
MK+L + + + +KY + VE GR D+GAFI + DG+ GLVHVS +
Sbjct: 429 MKQLQDNPWETLGDKYPTGATVE----GRVRNLTDFGAFIEIE--DGI---DGLVHVSNL 479
Query: 92 SW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
SW ++ ++L +G++VR V+ ++ E R++L IKQL+ D
Sbjct: 480 SWTKRVKHPSEVLKKGEKVRAVVLGVEPENRRLSLGIKQLQPD 522
>gi|149177391|ref|ZP_01855995.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
gi|148843724|gb|EDL58083.1| 30S ribosomal protein S1 [Planctomyces maris DSM 8797]
Length = 572
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYG 68
G ++V++ + N + + LV S E++ + + ++ + G +DYG
Sbjct: 322 FVGQKLTVQITEVNPKKRNLVVSRRKYLESEREEIQKELWEKLAIGQEHTGTVKNIKDYG 381
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L + G +H+ E+SW+ I+ +D L+E ++ VK++KID+EK+RI+L +K
Sbjct: 382 AFVDL------GGIDGFLHIGEISWNRIKHPKDALSEHQQINVKILKIDKEKNRISLGMK 435
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
QL++DP ++ GS IS + ++ IE PGL
Sbjct: 436 QLQQDPWQSAEDRYA--TGSTISGKVTRTTDFGAFIELEPGL 475
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I+VK+++ ++E ++ K W R G+ D+GAFI L
Sbjct: 416 INVKILKIDKEKNRISLGMKQLQQDPWQSAEDRYATGSTISGKVTRTTDFGAFIELE--- 472
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L GL+H+SE+ ++ + ++L G E KV+++D + RI+LSIK L + P
Sbjct: 473 --PGLEGLIHISELDHRRVKRVTEVLTTGQETSAKVLEVDPNRKRISLSIKALIDKP 527
>gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
RKU-1]
gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
Length = 543
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDY 67
+K++ E+ G ++ V+VI ++E +KL S + A W R NV ++ G+
Sbjct: 310 RKNLEEVVS--VGDLVKVEVINVDKENRKLTLSYRKAKGDPWENIEDRYNVNNVVTGKVT 367
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
G F + + G V VSE+SW I + +IL G++V+VK++KID+E +ITLSI
Sbjct: 368 GIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSI 427
Query: 128 KQLEEDPLLETLEKVIP 144
++ +E+P L+++ P
Sbjct: 428 RRTQENPWERALKELKP 444
>gi|357419716|ref|YP_004932708.1| SSU ribosomal protein S1P [Thermovirga lienii DSM 17291]
gi|355397182|gb|AER66611.1| SSU ribosomal protein S1P [Thermovirga lienii DSM 17291]
Length = 514
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 100/183 (54%), Gaps = 23/183 (12%)
Query: 4 SHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRV 56
SH+ +E KS++ ++K L G KVI+ + ++LV S E+ + +++ +V
Sbjct: 167 SHTSEEG-KSVN-LSK-LVGGTFDAKVIEKDRRKRRLVLSRRVILEEERSKLLDEFYGKV 223
Query: 57 NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRV 111
+ D+ G +GAF+ L + GL+H SE+SW + RD++++GD+V V
Sbjct: 224 SEGDVVEGTVSTVTSFGAFVDL------GPIEGLIHNSELSWQKNVNPRDVVSKGDKVSV 277
Query: 112 KVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLG 171
KVI IDREK++I+LS+KQL+ DP EK+ G ++ + + +E LPG+
Sbjct: 278 KVIGIDREKNKISLSLKQLQPDPWESAKEKL--SVGDIVKGTVTNVMDFGVFVEVLPGVE 335
Query: 172 AIF 174
+
Sbjct: 336 GLI 338
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G +SVKVI + E K+ S K W +++V DI G D+G F+ +
Sbjct: 272 GDKVSVKVIGIDREKNKISLSLKQLQPDPWESAKEKLSVGDIVKGTVTNVMDFGVFVEV- 330
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GL+H+ ++SW I+ ++++ +G + V+V+ +D E RI L +KQL DP
Sbjct: 331 ----LPGVEGLIHIGDLSWHRIKHPKEVVKKGQTIEVQVLSLDWENKRIGLGLKQL-HDP 385
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 5 HSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA--VWNKYSSRVNVEDIF 62
H K P++ + + G I V+V+ + E K++ K W R V +
Sbjct: 346 HRIKHPKEVVKK------GQTIEVQVLSLDWENKRIGLGLKQLHDPWKNIEERYQVNQDY 399
Query: 63 VGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117
+ D+GAF+ L + GL+HVS+++ ++ D+L+ G EV+ +++ +
Sbjct: 400 PVKVVRLTDFGAFVELE-----QGVEGLIHVSQIARKRVEKPSDVLSIGQEVQARLVDMR 454
Query: 118 REKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
++ RI LSI +EE+ + E+ Q + + S +S+ + +
Sbjct: 455 PQERRIRLSIAAIEEEKYRKQREEEKKQRMAEQAKSKPQFASDEDNV 501
>gi|343521385|ref|ZP_08758353.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343396591|gb|EGV09128.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 464
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 21/130 (16%)
Query: 17 IAKGLTGSIISV-----KVIQANEEMKKLVFSEK-DAVWNKYSSRVNVEDIFVGR----- 65
I K L +II++ KV+ + E+++ EK D W+K S V+D+ G
Sbjct: 218 IGKKLECAIINIDERKKKVVLSRREVEEKELQEKLDLAWSKLS----VDDVLTGTVRKLT 273
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF++L DGL +HVS++SW+ I+ DIL+ GDEV V ++K++RE++RI+L
Sbjct: 274 DFGAFVNLGDVDGL------IHVSDISWNRIKKPSDILSVGDEVEVVILKLNRERNRISL 327
Query: 126 SIKQLEEDPL 135
+KQL + P
Sbjct: 328 GLKQLTKKPF 337
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 5/69 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L+ ++ GLVH+S++S D I+ D+LN GDEV VK+I ID E +I+L
Sbjct: 359 DFGAFVKLK-----ENVEGLVHISQISHDHIEKASDVLNIGDEVEVKIINIDEENQKISL 413
Query: 126 SIKQLEEDP 134
SIK+L E P
Sbjct: 414 SIKELLEKP 422
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 80 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
Y G++ + E+S D+ + +D+ +EG E+ V VIK+D + + LS +++E
Sbjct: 109 YRSDGIIKLDELSSDITKKPKDLFHEGQEIDVYVIKLDDGEGNVVLSTRRVE 160
>gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
Length = 687
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHL 73
G I VK+++ N+E ++ K + + + N V D+ G+ D+GAF+ +
Sbjct: 511 VGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFANHHEVGDVVTGKVVNLLDFGAFVEV 570
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+SW+ ++ D LN GDE+ VK+I ID+E+ ++ LSIK L+E
Sbjct: 571 --ADGV---EGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDKEEEKVGLSIKALKEA 625
Query: 134 P 134
P
Sbjct: 626 P 626
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR--DYGA 69
K G +K+I +E +LV S KD V W++ V+ V R D+GA
Sbjct: 423 KKFVGEQWDLKIISIDERKNRLVLSRKDVVEEELDNLWDELEEGQVVKGK-VARLTDFGA 481
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ + L GL+HVS+++W ++ D+L+ GDE+ VK++K+++EK+RI+L KQ
Sbjct: 482 FVEVN------GLDGLLHVSDIAWSRVEHPSDVLSVGDEIEVKILKLNQEKNRISLGRKQ 535
Query: 130 LEEDPL 135
L E P
Sbjct: 536 LLEKPF 541
>gi|167957320|ref|ZP_02544394.1| RNA binding S1 domain protein [candidate division TM7 single-cell
isolate TM7c]
Length = 358
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 16/124 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-------NVEDIFVGR-DYGAFIH 72
L G + V+++ A+ + KL+FSEK+AV + + R VE + G D+G F++
Sbjct: 160 LIGKTMKVRILDADRKSNKLIFSEKEAVKDGLAERFEKLAVGDQVEGVVTGVVDFGVFVN 219
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ + GLVH+SE+SW+ + + D + G ++ K+I ID K R++LS+KQL +
Sbjct: 220 VE------GIEGLVHISEISWERVNNPSDYVKTGQTIKAKIIAID--KDRLSLSMKQLTQ 271
Query: 133 DPLL 136
DP L
Sbjct: 272 DPWL 275
>gi|33860870|ref|NP_892431.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33633812|emb|CAE18771.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 363
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S +I + L G + +K ++ +EE +LV S + A+ K +R+ V ++ +G + Y
Sbjct: 200 SARKIKEDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVIGSVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP 134
K LE +P
Sbjct: 314 KALEPEP 320
>gi|399053696|ref|ZP_10742495.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|433544588|ref|ZP_20500968.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
gi|398048473|gb|EJL40945.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|432184167|gb|ELK41688.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
Length = 390
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAF 70
G +++KV++ ++E K++ S K + + ++ ++ I VG+ D+G F
Sbjct: 148 GKSLTLKVVEMDKEKNKVILSHKAVLEEEAKAKKQSVLDQIQVGQVLEGTVQRMTDFGVF 207
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VHVSE++W+ ++ D++ EGD+V+VKV+KIDRE RI LSIK+
Sbjct: 208 VDIGGVDGL------VHVSELAWNRVEKPSDVVKEGDKVQVKVLKIDRENERIGLSIKET 261
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P + E+ + GS+ + + S +E PG+
Sbjct: 262 QAGPWAKVAEEF--KAGSITTGTVKRLVSFGAFVEVAPGI 299
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E +++ S K+ W K + I G +GAF+ +
Sbjct: 237 GDKVQVKVLKIDRENERIGLSIKETQAGPWAKVAEEFKAGSITTGTVKRLVSFGAFVEV- 295
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+S+++ + ++L EG EV+VK++ + ++ RI+LSI+ +EED
Sbjct: 296 ----APGIEGLVHISQIANRRVNTPGEVLKEGQEVQVKILDVVPQEQRISLSIRAVEED 350
>gi|226312030|ref|YP_002771924.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
gi|226094978|dbj|BAH43420.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
Length = 389
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWN--KYSSRVNVEDIFVGR----------DYGAF 70
G +++KV++ ++E K++ S K + + K + ++ I VG+ D+G F
Sbjct: 147 GKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVLEGTVQRMTDFGVF 206
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VHVSE++W+ + D++ EGD+V+VKV+KIDRE RI LSIK+
Sbjct: 207 VDIGGVDGL------VHVSELAWNRVDKPSDVVKEGDKVKVKVLKIDRENERIGLSIKET 260
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E + GS+++ + S IE PG+
Sbjct: 261 QAGPWASVAEDF--KAGSILNGTVKRLVSFGAFIELAPGI 298
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E +++ S K+ W + I G +GAFI L
Sbjct: 236 GDKVKVKVLKIDRENERIGLSIKETQAGPWASVAEDFKAGSILNGTVKRLVSFGAFIELA 295
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVH+S+++ + ++L EG EV+VKV+ + ++ RI+LSI+ +EED
Sbjct: 296 -P----GIEGLVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVPQEQRISLSIRAVEED 349
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK----DAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDG 78
G VKVI+ N+E ++LV S+K ++ W+ ++ +I A + G
Sbjct: 64 GDTFEVKVIKLNDEKEELVVSKKAVAMESSWSDLEQKMQAGEII-----EAAVKEVVKGG 118
Query: 79 LY---HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
L + G + S V ++D D +G + +KV+++D+EK+++ LS K + ED +
Sbjct: 119 LVVDVGVRGFIPASMVERHFVEDFSDY--KGKTLALKVVEMDKEKNKVILSHKAVLEDEV 176
>gi|407004109|gb|EKE20559.1| RNA binding S1 protein [uncultured bacterium]
Length = 460
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 20/148 (13%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVEDIFVGR-- 65
+ I E K L G + VK+I + +KL+ SEK A+ K SR+ D G
Sbjct: 180 KNKILEKLKRLVGQTLLVKIIDTYRDEEKLIVSEKAAMSEKEQVMISRLKEGDTIEGEVS 239
Query: 66 ---DYGAFIHLRFPDGLYH---------LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113
D+GAF+ P G+ L GLVH+SE++W LI + R+I+ GD+++ K+
Sbjct: 240 GVVDFGAFVKF-LPAGVKEGDDSIDGDKLEGLVHISELAWQLIDNPREIIKVGDKIKAKI 298
Query: 114 IKIDREKSRITLSIKQLEEDPLLETLEK 141
I ID ++RI+LSI+ L +DP E K
Sbjct: 299 IGID--EARISLSIRALAQDPWKEAQNK 324
>gi|239616621|ref|YP_002939943.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239505452|gb|ACR78939.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 572
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 7/86 (8%)
Query: 65 RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
+D+GAF+ L + GL+ SEVSWD Q + D+LN GD+V VKVI +D EK +I+
Sbjct: 206 KDFGAFVRL-----TNEVVGLIPASEVSWDPSQKVHDVLNVGDKVTVKVIDVDPEKKKIS 260
Query: 125 LSIKQLEEDPLLETLEKVIPQDGSVI 150
LS+KQL+EDP T+E+ P GSV+
Sbjct: 261 LSLKQLQEDP-WNTVEEKYPV-GSVV 284
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VK+ ++E + L S ++A+ W+ + V +I G+ GA + L
Sbjct: 329 GDRVKVKIKDIDKEKRTLSLSYREALGDPWDNIEEKYKVGEIVDGKVVKVLPTGAIVELE 388
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+++G V VSE+SW+ + + D++ E EV+ K++ ID+E R+ LS+KQ EDP
Sbjct: 389 -----EYVSGFVPVSEMSWNFVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDP 443
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 16/135 (11%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR 65
+P + +H++ G ++VKVI + E KK+ S K + WN + V + G
Sbjct: 230 DPSQKVHDVLN--VGDKVTVKVIDVDPEKKKISLSLKQLQEDPWNTVEEKYPVGSVVEGV 287
Query: 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDRE 119
+G F+ + + GLVH+SEV W ++ +D+++++ EGD V+VK+ ID+E
Sbjct: 288 VKSIVPFGFFVMIE-----PGVEGLVHISEVFWGNVRRDLKELIREGDRVKVKIKDIDKE 342
Query: 120 KSRITLSIKQLEEDP 134
K ++LS ++ DP
Sbjct: 343 KRTLSLSYREALGDP 357
>gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
Length = 686
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHL 73
G I VK+++ N+E ++ K + + + VN V D+ G+ D+GAF+ +
Sbjct: 511 VGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVTGKVVNLLDFGAFVEV 570
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+SW+ ++ D LN GDE+ VK+I ID ++ ++ LSIK L+E
Sbjct: 571 --ADGV---EGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKVGLSIKALKEA 625
Query: 134 P 134
P
Sbjct: 626 P 626
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 14/125 (11%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYS-SRVNVEDIFVGRDYGAF 70
K G +K+I +E +LV S K D +W + +V + D+GAF
Sbjct: 423 KKFVGEEWDLKIISIDERKNRLVLSRKEVVEDELDGLWEELEEGQVVTGKVARLTDFGAF 482
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + L GL+HVS+++W ++ D+LN GDE+ VK++K+++EK+RI+L KQL
Sbjct: 483 VEVN------GLDGLLHVSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQL 536
Query: 131 EEDPL 135
E P
Sbjct: 537 LEKPF 541
>gi|443322096|ref|ZP_21051130.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
gi|442788220|gb|ELR97919.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
Length = 344
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S + + L G + +K ++ +EE +LV S + A+ K +R+ V ++ +G + Y
Sbjct: 152 STRQAKEDLVGQELPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVIGTVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ + N DE++V +I +D E+ RI+LS
Sbjct: 212 GAFIDIG------GVSGLLHISEISHEHIETPHTVFNVNDELKVMIIDLDAERGRISLST 265
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 266 KQLEPEP 272
>gi|374856887|dbj|BAL59740.1| 30S ribosomal protein S1 [uncultured candidate division OP1
bacterium]
Length = 567
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 13/126 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ NE+ +++ S K W K + I GR D+GAF+HL
Sbjct: 335 GQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKIEEKYPEGSIVHGRVTKLADFGAFVHLE 394
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ L+H+SE+SWD + D++ EG E+ KVIK D K +I LS+K+L+EDP
Sbjct: 395 --DGV---EALLHISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDP 449
Query: 135 LLETLE 140
+ LE
Sbjct: 450 WHKFLE 455
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 30 VIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHV 88
V+ E +K+L +K+ +++K +E D+G F+ + GLVH
Sbjct: 178 VVSHREYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVDIG------GFEGLVHR 231
Query: 89 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
SE+SW I + GD+V VKV+ +DR K RI+LSIKQL DP +
Sbjct: 232 SEISWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWI 279
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G ++VKV+ + +++ S K + +Y + V D+GAF+ +
Sbjct: 249 GDKVTVKVLGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIE 308
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+SE+SW + R+++ G +V V V+ ++ ++ R++LS+K+++ DP
Sbjct: 309 -----EDVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDP 363
Query: 135 LLETLEKVIPQDGSVI 150
E +E+ P+ GS++
Sbjct: 364 -WEKIEEKYPE-GSIV 377
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I+ KVI+++ +K+ S K+ W+K+ +V I G +D+GAF ++
Sbjct: 421 GQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYSVGSIVEGPITELKDFGAF--MK 478
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
D + GL+HVSE++ + I D+L G V+ ++I I+ EK ++ LS++ L +
Sbjct: 479 ITD---DVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQE 535
Query: 135 LLET 138
L T
Sbjct: 536 HLVT 539
>gi|159472705|ref|XP_001694485.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
gi|40641370|emb|CAE51165.1| ribosomal protein S1 homologue [Chlamydomonas reinhardtii]
gi|158276709|gb|EDP02480.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
Length = 436
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 15/122 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVG-----RDYGAFIH 72
L G + VK ++ +EE ++LVFS K A V N V D+ G + YGAFI
Sbjct: 271 LVGFELQVKFLEVDEEAERLVFSHKRASSTVSNDIQG-FKVGDVVAGVVQSVKPYGAFID 329
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
L +TGL+HVS++S D + + IL EGD+++V ++ DRE+ R+TLS K+LE
Sbjct: 330 LG------GVTGLLHVSQISHDRVLVLDKILQEGDKIKVMILSQDRERGRVTLSTKKLEP 383
Query: 133 DP 134
P
Sbjct: 384 TP 385
>gi|119509035|ref|ZP_01628186.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119466201|gb|EAW47087.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 383
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|186682777|ref|YP_001865973.1| 30S ribosomal protein S1 [Nostoc punctiforme PCC 73102]
gi|186465229|gb|ACC81030.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 375
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|428306344|ref|YP_007143169.1| 30S ribosomal protein S1P [Crinalium epipsammum PCC 9333]
gi|428247879|gb|AFZ13659.1| SSU ribosomal protein S1P [Crinalium epipsammum PCC 9333]
Length = 391
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|428298667|ref|YP_007136973.1| 30S ribosomal protein S1P [Calothrix sp. PCC 6303]
gi|428235211|gb|AFZ01001.1| SSU ribosomal protein S1P [Calothrix sp. PCC 6303]
Length = 356
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 LVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 218
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 219 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|411117376|ref|ZP_11389863.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713479|gb|EKQ70980.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 331
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|282901377|ref|ZP_06309302.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281193656|gb|EFA68628.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|282895318|ref|ZP_06303520.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281199624|gb|EFA74484.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 343
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISQEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|440684481|ref|YP_007159276.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
gi|428681600|gb|AFZ60366.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
Length = 359
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|414079272|ref|YP_007000696.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413972551|gb|AFW96639.1| 30S ribosomal protein S1 [Anabaena sp. 90]
Length = 355
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|434404514|ref|YP_007147399.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428258769|gb|AFZ24719.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 378
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|427717194|ref|YP_007065188.1| 30S ribosomal protein S1P [Calothrix sp. PCC 7507]
gi|427349630|gb|AFY32354.1| SSU ribosomal protein S1P [Calothrix sp. PCC 7507]
Length = 361
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|428224572|ref|YP_007108669.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427984473|gb|AFY65617.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 323
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|335047279|ref|ZP_08540300.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333761087|gb|EGL38642.1| putative ribosomal protein S1 [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 462
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 26/129 (20%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVGR-----D 66
G + +I +E KK+V S + D W+K + V D+ G D
Sbjct: 219 GQKLECAIINLDERKKKVVLSRREVEEKELNEKLDLAWSKLA----VGDVLTGTIRKLTD 274
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF++L DGL +HVS++SW+ I+ DILN GD+V V ++K++RE++RI+L
Sbjct: 275 FGAFVNLGDVDGL------IHVSDISWNRIKKPSDILNVGDQVEVVILKLNRERNRISLG 328
Query: 127 IKQLEEDPL 135
+KQL + P
Sbjct: 329 LKQLTKKPF 337
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L+ ++ GLVH+S++S D I+ D+LN DEV+VK+I ID E +I+L
Sbjct: 359 DFGAFVKLK-----ENVEGLVHISQISHDHIEKASDVLNIDDEVQVKIINIDEENQKISL 413
Query: 126 SIKQL 130
SIK+L
Sbjct: 414 SIKEL 418
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 80 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
Y G++ + E+S D+ + +D+ +EG E+ V VIK+D + + LS +++E
Sbjct: 109 YRSDGIIKLDELSSDVTKKPKDLFHEGQEIDVYVIKLDDGEGNVVLSTRRVE 160
>gi|17227632|ref|NP_484180.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17135114|dbj|BAB77660.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 343
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|298492501|ref|YP_003722678.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298234419|gb|ADI65555.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 341
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|75907727|ref|YP_322023.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75701452|gb|ABA21128.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 343
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|417002438|ref|ZP_11941827.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 687
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLR 74
G + VK+++ N+E ++ K + + + N V D+ G+ D+GAF+ +
Sbjct: 512 GDEVEVKILKLNKEKNRISLGRKQLLEKPFEAFANQHEVGDVVTGKVVNLLDFGAFVEV- 570
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ GLVHVSE+SW+ ++ D LN GDE+ VK+I +D+E+ ++ LSIK L+E P
Sbjct: 571 -ADGV---EGLVHVSEISWEHVEKPSDELNVGDEIEVKIISLDKEEEKVGLSIKALKEAP 626
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 14/125 (11%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYS-SRVNVEDIFVGRDYGAF 70
K G +K++ +E +LV S KD V W++ +V + D+GAF
Sbjct: 423 KKFVGEDWDLKIVSIDERKNRLVLSRKDVVEGQLDELWDELEEGQVVTGKVARLTDFGAF 482
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + L GL+HVS+++W ++ D+LN GDEV VK++K+++EK+RI+L KQL
Sbjct: 483 VEVN------GLDGLLHVSDIAWSRVEHPSDVLNVGDEVEVKILKLNKEKNRISLGRKQL 536
Query: 131 EEDPL 135
E P
Sbjct: 537 LEKPF 541
>gi|83647658|ref|YP_436093.1| 30S ribosomal protein S1 [Hahella chejuensis KCTC 2396]
gi|83635701|gb|ABC31668.1| ribosomal protein S1 [Hahella chejuensis KCTC 2396]
Length = 559
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 19/149 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+DA+ + V+ I DYG
Sbjct: 147 LEGKDLEFKVIKLDQKRNNVVVSRRAVLEAENSAERDALLQTLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEITVKVLKFDRERNRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMS 157
QL EDP + E+ P++ V + ++++
Sbjct: 261 QLGEDPWVAIKER-YPENTRVTARVTNLT 288
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 18/152 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W ++S + N D G+
Sbjct: 314 KNIHPSKVVQLGDELEVMVLDIDEERRRISLGIKQCHANPWEEFSGKFNKGDRISGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G F+ L + GLVH+S++SW+ + +R +GD++ ++ ID E+
Sbjct: 374 ITDFGIFLGLE-----GGIDGLVHLSDISWNEPGEEAVRK-YKKGDDLETVILSIDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDS 153
RI+L IKQLE DP E + + + GS+++ +
Sbjct: 428 RISLGIKQLESDPFAEFTQ--LNEKGSIVTGT 457
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I+VKV++ + E ++ K A+ +Y V DYG F L
Sbjct: 238 GDEITVKVLKFDRERNRVSLGLKQLGEDPWVAIKERYPENTRVTARVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDE+ V V+ ID E+ RI+L IKQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVQLGDELEVMVLDIDEERRRISLGIKQCHA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I +DR+ I LSIK
Sbjct: 478 LKASEISRDKVEDARNVLKEGDEVEAKIISVDRKNRVINLSIK 520
>gi|427710313|ref|YP_007052690.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427362818|gb|AFY45540.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 358
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|427418503|ref|ZP_18908686.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425761216|gb|EKV02069.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 340
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + + + V ++ +G + YGAFI +
Sbjct: 159 LVGEALPLKFLEVDEERNRLVLSHRRALVERKMNGLQVGEVVIGAVRGLKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I +LN DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHDHIDTPNTVLNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|398813282|ref|ZP_10571981.1| ribosomal protein S1 [Brevibacillus sp. BC25]
gi|398038943|gb|EJL32089.1| ribosomal protein S1 [Brevibacillus sp. BC25]
Length = 390
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWN--KYSSRVNVEDIFVGR----------DYGAF 70
G +++KV++ ++E K++ S K + + K + ++ I VG+ D+G F
Sbjct: 148 GKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVLEGTVQRMTDFGVF 207
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VHVSE++W+ + D++ EGD+V+VKV+KIDRE RI LSIK
Sbjct: 208 VDIGGVDGL------VHVSELAWNRVDKPSDVVKEGDKVQVKVLKIDRENERIGLSIKDT 261
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E + GS+++ + S IE PG+
Sbjct: 262 QAGPWANVAEDF--KAGSILNGTVKRLVSFGAFIELAPGI 299
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E +++ S KD W + I G +GAFI L
Sbjct: 237 GDKVQVKVLKIDRENERIGLSIKDTQAGPWANVAEDFKAGSILNGTVKRLVSFGAFIELA 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVH+S+++ + ++L EG EV+VKV+ + ++ RI+LSI+ +EED
Sbjct: 297 -P----GIEGLVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVPQEQRISLSIRAVEED 350
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK----DAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDG 78
G VKVI+ N+E ++LV S+K ++ W+ ++ +I A + G
Sbjct: 65 GDTFEVKVIKLNDEKEELVVSKKAVAMESSWSDLEQKMQAGEII-----EATVKEVVKGG 119
Query: 79 LY---HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
L + G + S V ++D D +G + +KV+++D+EK+++ LS K + ED +
Sbjct: 120 LVVDVGVRGFIPASMVERHFVEDFSDY--KGKTLALKVVEMDKEKNKVILSHKAVLEDEV 177
>gi|227485051|ref|ZP_03915367.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
gi|227236884|gb|EEI86899.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
Length = 692
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLR 74
G I VK+++ N+E ++ K + + VN V D+ G+ D+GAF+ +
Sbjct: 515 GDEIEVKILKLNKEKNRISLGRKQLIEKPFEKFVNEHQVGDVVEGKVVNLLDFGAFVEV- 573
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ GLVHVSE+SWD ++ D LN GD + VK+I ID+++ ++ LSIK L+E P
Sbjct: 574 -ADGV---EGLVHVSEISWDHVEKPSDELNVGDTIEVKIISIDKDEEKVGLSIKALKEAP 629
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR--DYGA 69
K G +K+I +E +LV S KD + W++ V+ V R D+GA
Sbjct: 426 KKFVGEEWDLKIISIDERKNRLVLSRKDVLEAELDDLWDELEEGQVVKGK-VARLTDFGA 484
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ + L GL+HVS+++W ++ D+LN GDE+ VK++K+++EK+RI+L KQ
Sbjct: 485 FVEVN------GLDGLLHVSDIAWTRVEHPSDVLNVGDEIEVKILKLNKEKNRISLGRKQ 538
Query: 130 LEEDPL 135
L E P
Sbjct: 539 LIEKPF 544
>gi|354568686|ref|ZP_08987849.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353539940|gb|EHC09420.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 337
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 218
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 219 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|406885585|gb|EKD32746.1| RNA binding S1 protein [uncultured bacterium]
Length = 374
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 21/146 (14%)
Query: 1 MSPSHSCKEPQKSIHEIA---KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV- 56
++P H + H+I K GS I V+++ NE KL+ SEK A+W + V
Sbjct: 144 LAPEHYPRVTGGDKHKILERIKEFVGSEIEVRILDLNENENKLILSEK-ALWEEKQKNVI 202
Query: 57 ---NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
V DI G D+GAF+ RF DGL GL+H+SE++W I RDIL G
Sbjct: 203 EKYKVGDIIEGEVTALADFGAFV--RF-DGL---EGLIHISEIAWQRIDHPRDILKAGQT 256
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDP 134
V+ ++I + E S+I LS+K+L +DP
Sbjct: 257 VKAEIIGL--EGSKIFLSMKKLVDDP 280
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 20 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRD-YGAFIHLRFPDG 78
GL GS I + MKKLV V KY VE + + + +G F+ L
Sbjct: 263 GLEGSKIFLS-------MKKLVDDPWKDVEKKYKIGDKVEGLIIKSNPFGFFVELD---- 311
Query: 79 LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ + GL H+SE+S I+D+ +I GD+ VI I+ ++ R+ LS+K
Sbjct: 312 -HDIHGLAHMSELSDKPIKDLSEIAAIGDKKTFTVITIEPQEHRLGLSLK 360
>gi|434392818|ref|YP_007127765.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
gi|428264659|gb|AFZ30605.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
Length = 330
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|16330162|ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383321905|ref|YP_005382758.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325074|ref|YP_005385927.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490958|ref|YP_005408634.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436225|ref|YP_005650949.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814321|ref|YP_007450773.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500385|sp|P73530.1|RS1A_SYNY3 RecName: Full=30S ribosomal protein S1 homolog A
gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273257|dbj|BAK49744.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271224|dbj|BAL28743.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274394|dbj|BAL31912.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277564|dbj|BAL35081.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958070|dbj|BAM51310.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451780290|gb|AGF51259.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 328
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + VG + Y
Sbjct: 150 SAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPY 209
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 210 GAFIDIG------GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLST 263
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 264 KQLEPEP 270
>gi|427732442|ref|YP_007078679.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427368361|gb|AFY51082.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 344
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHEHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|428314208|ref|YP_007125185.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428255820|gb|AFZ21779.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 339
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 LVGEELQLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI-- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|312880067|ref|ZP_07739867.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
gi|310783358|gb|EFQ23756.1| SSU ribosomal protein S1P [Aminomonas paucivorans DSM 12260]
Length = 502
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 28 VKVIQANEEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVG-----RDYGAFIHLRF 75
VK+I+ + ++LV S + + + SS V+ D+ G +G F++L
Sbjct: 173 VKMIEKDRRKRRLVLSRRSMLEEELSSLREDFYANVHEGDVLEGDVSSITSFGVFVNL-- 230
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
L GLVH+SE+SW RD++N+GD V+VKVI IDRE +RI+LSIKQ +DP
Sbjct: 231 ----GALEGLVHISELSWQRNAKARDLVNKGDHVKVKVIGIDRETNRISLSIKQTLDDPW 286
Query: 136 LETLEK 141
E+
Sbjct: 287 FTVHER 292
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 56 VNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
VNV+ + + D+GAF+ L + GL+H+S++S + +D+L EG EV ++++
Sbjct: 384 VNVKVVRLA-DFGAFVELE-----EGVEGLIHISQLSRQRVDKPQDVLQEGQEVEARILE 437
Query: 116 IDREKSRITLSIKQLEEDPLLE 137
++ + RI LS++ E+P E
Sbjct: 438 VNPAERRIRLSLRPQSEEPAEE 459
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 14/127 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVW----NKYSSRVNVEDIFVG-RDYGAFIHLR 74
G + VKVI + E ++ S K D W ++ E D+GAF+ +
Sbjct: 257 GDHVKVKVIGIDRETNRISLSIKQTLDDPWFTVHERWQKDARTEGTVTNLTDFGAFVEIE 316
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
P + GLVH+ ++SW I+ R++L +G ++ V V+ +D ++ RI+L KQL DP
Sbjct: 317 -PG----VEGLVHIGDLSWSRIKHPREVLKKGQKIDVVVLDVDTDRKRISLGFKQL-HDP 370
Query: 135 LLETLEK 141
+ E+
Sbjct: 371 WRDVEER 377
>gi|406943737|gb|EKD75667.1| hypothetical protein ACD_44C00064G0001 [uncultured bacterium]
Length = 558
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T ++SW ++ +I+N GDE+RVKV+K DRE+SR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMSWKRVKHPNEIVNVGDEIRVKVLKFDRERSRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL +DP + +++
Sbjct: 258 GLKQLGDDPWTDLIKR 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 20/135 (14%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR- 65
P K +H G V V++ +EE +++ K D W +S D G+
Sbjct: 318 PNKVVH------LGQETEVMVLEIDEERRRISLGLKQCADNPWEAFSKTHAKGDKIAGKI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW D +D +GDE+ V+ +D E+
Sbjct: 372 KSITDFGIFIGL---DG--SIDGLVHLSDISWTDTGEDAVKKYKKGDELEALVLAVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQL +D L
Sbjct: 427 ERISLGIKQLADDAL 441
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K D W R VG+ DYG F+ +
Sbjct: 238 GDEIRVKVLKFDRERSRVSLGLKQLGDDPWTDLIKRHPKGARLVGKVTNITDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + +++ G E V V++ID E+ RI+L +KQ ++
Sbjct: 298 -----NGVEGLVHVSEMDWTNKNINPNKVVHLGQETEVMVLEIDEERRRISLGLKQCADN 352
Query: 134 P 134
P
Sbjct: 353 P 353
>gi|428212888|ref|YP_007086032.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001269|gb|AFY82112.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 425
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|269792637|ref|YP_003317541.1| RNA binding S1 domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100272|gb|ACZ19259.1| RNA binding S1 domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 504
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 18/128 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR-----DYG 68
L G VK+++ + ++LV S + ++ ++ + V+ DI G +G
Sbjct: 166 LVGKTFPVKLVEKDRRKRRLVLSRRSILDEEMASLREEFYANVHEGDILEGEVSSITSFG 225
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F++L + GLVH++E+SW +D++ +GD+V+VKVI IDRE +R++LS+K
Sbjct: 226 VFVNL------GAMEGLVHITELSWQRGAKAKDLVQKGDKVKVKVIGIDRENNRVSLSLK 279
Query: 129 QLEEDPLL 136
Q +EDP +
Sbjct: 280 QAQEDPWV 287
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI + E ++ S K A W +SR V G D+GAF+ +
Sbjct: 257 GDKVKVKVIGIDRENNRVSLSLKQAQEDPWVGVTSRWTVGQRTKGVVTNLADFGAFVEIE 316
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
P + GL+H+ ++SW ++ +++L +G EV V ++++D ++ RI L +KQL DP
Sbjct: 317 -PG----VEGLIHIGDLSWSRVKHPKEVLKKGQEVEVVILEVDGDRRRIGLGLKQL-NDP 370
Query: 135 LLETLEK 141
EK
Sbjct: 371 WANVSEK 377
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + DG+ GL+H+S++S ++ D+L EG EV+ K+++++ + RI L
Sbjct: 393 DFGAFVEIE--DGV---EGLIHISQLSRQRVEKPSDVLREGQEVQAKILEVNPSEKRIRL 447
Query: 126 SIKQLEE 132
S++ LEE
Sbjct: 448 SLRALEE 454
>gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
Length = 691
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 14/127 (11%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR---VNVEDIFVGR-----DYGAF 70
K G +K+I +E +LV S KD V K + + + G+ D+GAF
Sbjct: 423 KKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLTDFGAF 482
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + L GL+HVS+++W ++ +D+LN GD++ VK++K+++EK+RI+L KQL
Sbjct: 483 IEIG------SLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQL 536
Query: 131 EEDPLLE 137
E P E
Sbjct: 537 LEKPFAE 543
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLR 74
G I VK+++ N+E ++ K + ++ N V D+ G+ D+GAF+ +
Sbjct: 512 GDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNEHEVGDVITGKVVNLLDFGAFVEV- 570
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G+ GL+HVSE+SWD ++ D LN GDEV VK++ ID E+ +I LSIK L+E P
Sbjct: 571 -SEGV---EGLIHVSEISWDHVEKPSDELNVGDEVEVKILSIDPEEEKIGLSIKALKEAP 626
>gi|94971687|ref|YP_593735.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
Ellin345]
gi|94553737|gb|ABF43661.1| SSU ribosomal protein S1P [Candidatus Koribacter versatilis
Ellin345]
Length = 609
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 18/134 (13%)
Query: 20 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DY 67
L G + V++I+ N++ +V S K + + + + +N + + G DY
Sbjct: 198 ALKGHELEVRIIKLNKKRGNIVVSRKQILEEEQNDKKSKTLEHLNEDAVLTGTVKNLTDY 257
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAF+ L DGL +H++++SW + RD++ GD+++VKV+K DR+K R++L
Sbjct: 258 GAFVDLGGIDGL------LHITDMSWGRLTHPRDLVQVGDQIQVKVLKFDRDKQRVSLGF 311
Query: 128 KQLEEDPLLETLEK 141
KQL DP L+ E+
Sbjct: 312 KQLTPDPWLDASER 325
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + + +++ K W S R + GR DYGAFI L
Sbjct: 290 GDQIQVKVLKFDRDKQRVSLGFKQLTPDPWLDASERYPIGARVHGRVISVTDYGAFIELE 349
Query: 75 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE++W ++ I+N GD+V V+ ++ ++ RI+L +KQLE +
Sbjct: 350 -----QGIEGLVHVSEMTWSKRMKHPSKIVNVGDQVDAVVLNVNPQERRISLGLKQLETN 404
Query: 134 PLLETLEKVIPQDGSV 149
P E+L + P G V
Sbjct: 405 P-WESLHEKFPVGGVV 419
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 20/142 (14%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS---RVN 57
M+ S K P K ++ G + V+ N + +++ K N + S +
Sbjct: 361 MTWSKRMKHPSKIVN------VGDQVDAVVLNVNPQERRISLGLKQLETNPWESLHEKFP 414
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRV 111
V + G+ D+GAFI + DG+ GLVHVS +SW ++ ++L +GD+V+
Sbjct: 415 VGGVVEGKVRNLTDFGAFIEIE--DGI---DGLVHVSNLSWTKRVKHPSEVLKKGDKVKA 469
Query: 112 KVIKIDREKSRITLSIKQLEED 133
V+ I+ + R++L +KQL+ D
Sbjct: 470 VVLAIEPDNRRLSLGVKQLQPD 491
>gi|336311340|ref|ZP_08566304.1| SSU ribosomal protein S1p [Shewanella sp. HN-41]
gi|335865143|gb|EGM70193.1| SSU ribosomal protein S1p [Shewanella sp. HN-41]
Length = 555
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP LE + K P++ + ++++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPENTKLTGRVTNLT 288
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G++++ + S + T+E
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTIVNGTVSAVDAKGVTVE 469
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S + I+D + N GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYIRVADISRERIEDASTVYNVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLN 535
Query: 144 PQDGSVISDS 153
Q+ +VIS++
Sbjct: 536 KQEDAVISNA 545
>gi|113970262|ref|YP_734055.1| 30S ribosomal protein S1 [Shewanella sp. MR-4]
gi|114047549|ref|YP_738099.1| 30S ribosomal protein S1 [Shewanella sp. MR-7]
gi|117920422|ref|YP_869614.1| 30S ribosomal protein S1 [Shewanella sp. ANA-3]
gi|113884946|gb|ABI38998.1| SSU ribosomal protein S1P [Shewanella sp. MR-4]
gi|113888991|gb|ABI43042.1| SSU ribosomal protein S1P [Shewanella sp. MR-7]
gi|117612754|gb|ABK48208.1| SSU ribosomal protein S1P [Shewanella sp. ANA-3]
Length = 555
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP LE + K P++ + ++++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPENTKLTGRVTNLT 288
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G++++ + S + T+E
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTIVNGTVSAVDAKGVTVE 469
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S + I+D + + GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYIRVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLN 535
Query: 144 PQDGSVISDS 153
Q+ +VIS++
Sbjct: 536 KQEDAVISNA 545
>gi|119774871|ref|YP_927611.1| 30S ribosomal protein S1 [Shewanella amazonensis SB2B]
gi|119767371|gb|ABL99941.1| SSU ribosomal protein S1P [Shewanella amazonensis SB2B]
Length = 555
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP LE + K P++ + ++++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPENTRLTGRVTNLT 288
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWEDFANRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVSEYKKGDEIEAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ E+DP + + G++++ + + + T+E G+
Sbjct: 428 RISLGVKQTEDDPFNGYVGD--KKKGAIVNGTVTAVDAKGVTVELAEGV 474
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S + ++D + + GD V K + +DR+ ++LSI+ +E E + +
Sbjct: 476 GYIRVADISRERVEDASTVFSVGDAVEAKFMGVDRKNRNVSLSIRAKDEADEKEVMANLN 535
Query: 144 PQDGSVISDS 153
Q+ +VIS++
Sbjct: 536 KQEDAVISNA 545
>gi|157375435|ref|YP_001474035.1| 30S ribosomal protein S1 [Shewanella sediminis HAW-EB3]
gi|157317809|gb|ABV36907.1| ribosomal protein S1 [Shewanella sediminis HAW-EB3]
Length = 555
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFAERFQKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVAEYKKGDEINAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G+V++ + + + TIE
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTVVNGTVTAVDAKGVTIE 469
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S + I+D + + GD V K + +DR+ I+LSI+ +E E + +
Sbjct: 476 GYLRVADISRERIEDASTVYSVGDAVESKFMGVDRKNRTISLSIRAKDEAEEKEAMASLN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q+ +V+ SS+M+ +
Sbjct: 536 KQEDAVM--SSAMAEA 549
>gi|24373949|ref|NP_717992.1| ribosomal protein S1 RpsA [Shewanella oneidensis MR-1]
gi|24348384|gb|AAN55436.1| ribosomal protein S1 RpsA [Shewanella oneidensis MR-1]
Length = 555
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP LE + K P++ + ++++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPENTKLTGRVTNLT 288
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G+++ + S + T+E
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTIVHGTVSAVDAKGVTVE 469
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S + I+D + + GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYIRVADISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLN 535
Query: 144 PQDGSVISDS 153
Q+ +VIS++
Sbjct: 536 KQEDAVISNA 545
>gi|27904178|gb|AAO27011.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 576
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 76/133 (57%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFVG------RDYG 68
L G + KVI+ +++ +V S + + ++Y++ N+ E + V DYG
Sbjct: 157 LEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYG 216
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDEV++K++K DREK R++L +K
Sbjct: 217 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLK 270
Query: 129 QLEEDPLLETLEK 141
QL +DP + E+
Sbjct: 271 QLSDDPWTKISER 283
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 16/152 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH S++ V ++ +EE +++ K W ++S + N VG+
Sbjct: 323 NKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIK 382
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ ++ +G+EV V+++D ++
Sbjct: 383 SITDFGIFIGLEGS-----IDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRE 437
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDS 153
RI+L IKQL+EDP + + + GS++S +
Sbjct: 438 RISLGIKQLQEDPFAKYVSS--HKKGSLVSGT 467
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + +K+++ + E ++ K D W K S R + GR DYG F+ +
Sbjct: 248 GDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIE 307
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ W ++I ++ V+V ++ ID E+ RI+L +KQ +
Sbjct: 308 --EGV---EGLVHVSEMDW-TNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKN 361
Query: 133 DPLLE 137
+P +E
Sbjct: 362 NPWME 366
>gi|374339665|ref|YP_005096401.1| 30S ribosomal protein S1 [Marinitoga piezophila KA3]
gi|372101199|gb|AEX85103.1| ribosomal protein S1 [Marinitoga piezophila KA3]
Length = 519
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGRDYGAFIHLRFPDG 78
G + VKV+ +++ KK+ S K + W +++ DI G + P+G
Sbjct: 317 VGDKVKVKVLSIDKDKKKITLSYKQVLGDPWKDIDEKLHEGDIVDG-----VVEKILPNG 371
Query: 79 LY-----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L LTG HVSE+SW+ + ++ D+ EGD+V+VKV+ +D+E +I LS+KQ +E+
Sbjct: 372 LIIKLDNELTGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKLSVKQAKEN 431
Query: 134 P 134
P
Sbjct: 432 P 432
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 49 WNKYSSRVNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
+N ++ VE + G +++G FI L P ++T LV SE+SWD DI ++ GD
Sbjct: 179 FNTHNLNTLVEGVVTGIKEFGLFISLN-P----YITALVPKSEISWDKKVDINEMYKIGD 233
Query: 108 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSV 149
+V+ +IK+D+E +I++S+K+L++DP ET+EK P D V
Sbjct: 234 KVKGIIIKLDKENRKISVSVKRLKDDP-WETVEKDYPVDSIV 274
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 75 FPDGLY-----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
FP G + GLVH SE+ W + I D+++ GD+V+VKV+ ID++K +ITLS KQ
Sbjct: 282 FPFGFAVKLGEGIEGLVHESEIFWSGKRKIEDVVSVGDKVKVKVLSIDKDKKKITLSYKQ 341
Query: 130 LEEDPLLETLEKV 142
+ DP + EK+
Sbjct: 342 VLGDPWKDIDEKL 354
>gi|126174291|ref|YP_001050440.1| 30S ribosomal protein S1 [Shewanella baltica OS155]
gi|153000799|ref|YP_001366480.1| 30S ribosomal protein S1 [Shewanella baltica OS185]
gi|160875508|ref|YP_001554824.1| 30S ribosomal protein S1 [Shewanella baltica OS195]
gi|217973242|ref|YP_002357993.1| 30S ribosomal protein S1 [Shewanella baltica OS223]
gi|373949584|ref|ZP_09609545.1| ribosomal protein S1 [Shewanella baltica OS183]
gi|378708706|ref|YP_005273600.1| 30S ribosomal protein S1 [Shewanella baltica OS678]
gi|386324581|ref|YP_006020698.1| 30S ribosomal protein S1 [Shewanella baltica BA175]
gi|386341020|ref|YP_006037386.1| 30S ribosomal protein S1 [Shewanella baltica OS117]
gi|418025303|ref|ZP_12664282.1| ribosomal protein S1 [Shewanella baltica OS625]
gi|125997496|gb|ABN61571.1| SSU ribosomal protein S1P [Shewanella baltica OS155]
gi|151365417|gb|ABS08417.1| ribosomal protein S1 [Shewanella baltica OS185]
gi|160861030|gb|ABX49564.1| ribosomal protein S1 [Shewanella baltica OS195]
gi|217498377|gb|ACK46570.1| ribosomal protein S1 [Shewanella baltica OS223]
gi|315267695|gb|ADT94548.1| ribosomal protein S1 [Shewanella baltica OS678]
gi|333818726|gb|AEG11392.1| ribosomal protein S1 [Shewanella baltica BA175]
gi|334863421|gb|AEH13892.1| ribosomal protein S1 [Shewanella baltica OS117]
gi|353535287|gb|EHC04850.1| ribosomal protein S1 [Shewanella baltica OS625]
gi|373886184|gb|EHQ15076.1| ribosomal protein S1 [Shewanella baltica OS183]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G++++ + S + T+E
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTIVNGTVSAVDAKGVTVE 469
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S + I+D + N GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYIRVADISRERIEDASTVYNVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLN 535
Query: 144 PQDGSVISDS 153
QD +VIS++
Sbjct: 536 KQDDAVISNA 545
>gi|161511183|ref|NP_777906.2| 30S ribosomal protein S1 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|38503269|sp|Q89AJ3.2|RS1_BUCBP RecName: Full=30S ribosomal protein S1
Length = 566
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 76/133 (57%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFVG------RDYG 68
L G + KVI+ +++ +V S + + ++Y++ N+ E + V DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDEV++K++K DREK R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLK 260
Query: 129 QLEEDPLLETLEK 141
QL +DP + E+
Sbjct: 261 QLSDDPWTKISER 273
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH S++ V ++ +EE +++ K W ++S + N VG+
Sbjct: 313 NKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ ++ +G+EV V+++D ++
Sbjct: 373 SITDFGIFIGLEGS-----IDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL+EDP
Sbjct: 428 RISLGIKQLQEDPF 441
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + +K+++ + E ++ K D W K S R + GR DYG F+ +
Sbjct: 238 GDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ W ++I ++ V+V ++ ID E+ RI+L +KQ +
Sbjct: 298 --EGV---EGLVHVSEMDW-TNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKN 351
Query: 133 DPLLE 137
+P +E
Sbjct: 352 NPWME 356
>gi|212556777|gb|ACJ29231.1| Ribosomal protein S1 [Shewanella piezotolerans WP3]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERFNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVAEYKKGDEINAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQ E+DP
Sbjct: 428 RISLGVKQTEDDPF 441
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VS++S + I+D + + GD+V K + +DR+ I+LSI+ +E E + +
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDKVESKFMGVDRKNRTISLSIRAKDEAEEKEAMASLN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q+ +V+ SS+M+ +
Sbjct: 536 KQEDAVM--SSAMAEA 549
>gi|157961894|ref|YP_001501928.1| 30S ribosomal protein S1 [Shewanella pealeana ATCC 700345]
gi|157846894|gb|ABV87393.1| ribosomal protein S1 [Shewanella pealeana ATCC 700345]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERFNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVAEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQ E+DP
Sbjct: 428 RISLGVKQTEDDPF 441
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VS++S + I+D + + GD+V K + +DR+ I+LSI+ +E E + +
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDKVESKFMGVDRKNRTISLSIRAKDEAEEKEAMASLN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q+ +V+ SS+M+ +
Sbjct: 536 SQEDAVM--SSAMAEA 549
>gi|359459159|ref|ZP_09247722.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 325
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LIGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N D+++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDDLKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|167623971|ref|YP_001674265.1| 30S ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
gi|167353993|gb|ABZ76606.1| ribosomal protein S1 [Shewanella halifaxensis HAW-EB4]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERFNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVAEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQ E+DP
Sbjct: 428 RISLGVKQTEDDPF 441
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VS++S + I+D + GD+V K + +DR+ I+LSI+ +E E + +
Sbjct: 476 GYLRVSDISRERIEDASTVYAVGDKVESKFMGVDRKNRTISLSIRAKDEAEEKEAMASLN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q+ +V+ SS+M+ +
Sbjct: 536 SQEDAVM--SSAMAEA 549
>gi|127512882|ref|YP_001094079.1| 30S ribosomal protein S1 [Shewanella loihica PV-4]
gi|126638177|gb|ABO23820.1| SSU ribosomal protein S1P [Shewanella loihica PV-4]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFAERYAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVSDYKKGDEISAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G++++ + + + TIE
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGAIVTGTVTAVDAKGVTIE 469
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 16/134 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DPLLETLEKVIPQD 146
+P + E+ D
Sbjct: 352 NPWDDFAERYAKGD 365
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VS++S + I+D + + GD V K + +DR+ I+LSI+ +E E + +
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDTVESKFMGVDRKNRSISLSIRAKDEADEKEAMANLN 535
Query: 144 PQDGSVISDS 153
QD +S++
Sbjct: 536 KQDDVAMSNA 545
>gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
Length = 692
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 14/127 (11%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR---VNVEDIFVGR-----DYGAF 70
K G +K+I +E +LV S KD V K + + + G+ D+GAF
Sbjct: 423 KKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLTDFGAF 482
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + L GL+HVS+++W ++ +D+LN GD++ VK++K+++EK+RI+L KQL
Sbjct: 483 VEIG------SLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQL 536
Query: 131 EEDPLLE 137
E P E
Sbjct: 537 LEKPFAE 543
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLR 74
G I VK+++ N+E ++ K + ++ N V D+ G+ D+GAF+ +
Sbjct: 512 GDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVEV- 570
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G+ GL+HVSE+SW+ ++ D L GDEV VK++ ID E+ +I LSIK L+E P
Sbjct: 571 -SEGV---EGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKALKEAP 626
>gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
gi|414596444|ref|ZP_11446019.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE E16]
gi|421876351|ref|ZP_16307909.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C10]
gi|421878101|ref|ZP_16309584.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C11]
gi|169803898|gb|ACA82516.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
gi|372557872|emb|CCF24029.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C10]
gi|390447976|emb|CCF25704.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C11]
gi|390482906|emb|CCF28080.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE E16]
Length = 396
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 16/148 (10%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHL 82
I+S K + A E +L V++K S VE V R D+GAF+ L DGL
Sbjct: 173 ILSRKAVAAQERAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL--- 223
Query: 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +K+
Sbjct: 224 ---VHVSEISHDRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRGPWDEAADKI 280
Query: 143 IPQDGSVISDSSSMSSSNSNTIEPLPGL 170
GSV+ + +E LPG+
Sbjct: 281 AA--GSVLEGTVKRVKDFGAFVEILPGI 306
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 13/123 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 244 GDKVNVKILALDTEKGRISLSIKATQRGPWDEAADKIAAGSVLEGTVKRVKDFGAFVEI- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 303 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 358
Query: 135 LLE 137
E
Sbjct: 359 QRE 361
>gi|120598785|ref|YP_963359.1| 30S ribosomal protein S1 [Shewanella sp. W3-18-1]
gi|146293138|ref|YP_001183562.1| 30S ribosomal protein S1 [Shewanella putrefaciens CN-32]
gi|386313725|ref|YP_006009890.1| 30S ribosomal protein S1 [Shewanella putrefaciens 200]
gi|120558878|gb|ABM24805.1| SSU ribosomal protein S1P [Shewanella sp. W3-18-1]
gi|145564828|gb|ABP75763.1| SSU ribosomal protein S1P [Shewanella putrefaciens CN-32]
gi|319426350|gb|ADV54424.1| ribosomal protein S1 [Shewanella putrefaciens 200]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G+++ + S + T+E
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTIVHGTVSAVDAKGVTVE 469
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S + I+D + N GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYIRVADISRERIEDASTVYNVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLN 535
Query: 144 PQDGSVISDS 153
Q+ +VIS++
Sbjct: 536 KQEDAVISNA 545
>gi|406985724|gb|EKE06462.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 334
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 20/146 (13%)
Query: 1 MSPSHSCKEP---QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV- 56
+SP + + P ++ I E K L G + VKVI +++ +KL+ SEK A+W V
Sbjct: 47 LSPENYPRVPGGDKERILEHLKALIGKTLQVKVIDVDQKDEKLIVSEK-AIWEDDQKAVL 105
Query: 57 ---NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
V D G +GAFI +F +GL GLVH+SE+ W I+ RD+L G +
Sbjct: 106 ESYKVGDTVDGEVSALTSFGAFI--KFGEGL---EGLVHISEIVWQRIEHPRDVLKVGQK 160
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDP 134
V+ ++ ID KS+I LSIK+L +DP
Sbjct: 161 VKAQI--IDLNKSKIYLSIKRLVQDP 184
>gi|91715111|gb|ABE55037.1| SSU ribosomal protein S1P [Shewanella denitrificans OS217]
Length = 577
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 226 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 279
Query: 126 SIKQLEEDPLLE 137
+KQL EDP LE
Sbjct: 280 GLKQLGEDPWLE 291
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 335 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFATRYNKGDKVSGKIK 394
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 395 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 449
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G+V++ + S + T+E
Sbjct: 450 RISLGVKQTEDDPFNAYLAD--KKKGTVVNGTVSAVDAKGVTVE 491
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 260 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLSGRVTNLTDYGCFVEIE 319
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 320 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 373
Query: 133 DP 134
+P
Sbjct: 374 NP 375
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G V V+++S + I+D + GD + + + +DR+ I+LSIK +E E + +
Sbjct: 498 GYVRVADISAERIEDASTVYTVGDAIEARFMGVDRKNRSISLSIKAKDEAEQKEAIATLN 557
Query: 144 PQDGSVISDS 153
QD VIS++
Sbjct: 558 KQDDVVISNA 567
>gi|427737703|ref|YP_007057247.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427372744|gb|AFY56700.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 442
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 160 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 218 ----GGVSGLLHISEISHEHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|170726659|ref|YP_001760685.1| 30S ribosomal protein S1 [Shewanella woodyi ATCC 51908]
gi|169812006|gb|ACA86590.1| ribosomal protein S1 [Shewanella woodyi ATCC 51908]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP LE
Sbjct: 258 GLKQLGEDPWLE 269
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFADRFAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVAEYKKGDEINAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G++++ + + + TIE
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGAIVNGTVTAVDAKGVTIE 469
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VS++S + I+D + + GD V K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDAVESKFMGVDRKNRTISLSIKAKDEADEKEAMASLN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q+ V+ SS+M+ +
Sbjct: 536 KQEDDVM--SSAMAEA 549
>gi|162210774|ref|YP_562760.2| 30S ribosomal protein S1 [Shewanella denitrificans OS217]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP LE
Sbjct: 258 GLKQLGEDPWLE 269
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFATRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G+V++ + S + T+E
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTVVNGTVSAVDAKGVTVE 469
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G V V+++S + I+D + GD + + + +DR+ I+LSIK +E E + +
Sbjct: 476 GYVRVADISAERIEDASTVYTVGDAIEARFMGVDRKNRSISLSIKAKDEAEQKEAIATLN 535
Query: 144 PQDGSVISDS 153
QD VIS++
Sbjct: 536 KQDDVVISNA 545
>gi|160947387|ref|ZP_02094554.1| hypothetical protein PEPMIC_01321 [Parvimonas micra ATCC 33270]
gi|158446521|gb|EDP23516.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Parvimonas
micra ATCC 33270]
Length = 674
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 26/134 (19%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVGR-----D 66
G + +I +E KK+V S + D W S++ V D+ G D
Sbjct: 429 GKKLECAIINIDERKKKIVLSRREVEEKELQEKLDLAW----SKLAVGDVLRGTVRKLTD 484
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF++L DGL +HVS++SW+ I+ DIL+ GDEV V ++K++RE++RI+L
Sbjct: 485 FGAFVNLGDVDGL------IHVSDISWNRIKKPSDILSVGDEVEVIILKLNRERNRISLG 538
Query: 127 IKQLEEDPLLETLE 140
+KQL + P LE
Sbjct: 539 LKQLTKKPFELFLE 552
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L+ ++ GLVH+S++S D I+ D+LN G+EV+VK+I ID E +I+L
Sbjct: 569 DFGAFVKLK-----ENVEGLVHISQISHDHIEKASDVLNIGEEVQVKIINIDEENQKISL 623
Query: 126 SIKQL 130
SIK+L
Sbjct: 624 SIKEL 628
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 80 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
Y G++ + E+S D+ + +D+ +EG E+ V VIK+D + + LS +++E
Sbjct: 319 YRSDGIIKLDELSSDVTKKPKDLFHEGQEIDVYVIKLDDGEGNVVLSTRRVE 370
>gi|158337672|ref|YP_001518848.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158307913|gb|ABW29530.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 325
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LIGEELPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N D+++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDDLKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 692
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 14/127 (11%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR---VNVEDIFVGR-----DYGAF 70
K G +K+I +E +LV S KD V K + + + G+ D+GAF
Sbjct: 423 KKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLTDFGAF 482
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + L GL+HVS+++W ++ +D+LN GD++ VK++K+++EK+RI+L KQL
Sbjct: 483 VEIG------SLDGLLHVSDIAWTRVEHPKDVLNIGDDIEVKILKLNKEKNRISLGRKQL 536
Query: 131 EEDPLLE 137
E P E
Sbjct: 537 LEKPFAE 543
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLR 74
G I VK+++ N+E ++ K + ++ N V D+ G+ D+GAF+ +
Sbjct: 512 GDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVEV- 570
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G+ GL+HVSE+SW+ ++ D L GDEV VK++ ID E+ +I LSIK L+E P
Sbjct: 571 -SEGV---EGLIHVSEISWEHVEKPSDELTVGDEVEVKILSIDPEEEKIGLSIKALKEAP 626
>gi|114563294|ref|YP_750807.1| 30S ribosomal protein S1 [Shewanella frigidimarina NCIMB 400]
gi|114334587|gb|ABI71969.1| SSU ribosomal protein S1P [Shewanella frigidimarina NCIMB 400]
Length = 555
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP LE
Sbjct: 258 GLKQLGEDPWLE 269
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ +++R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFATRYNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G+V+ + S + T+E
Sbjct: 428 RISLGVKQTEDDPFNAYLAD--KKKGTVVHGTVSAVDAKGVTVE 469
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S D I+D + + GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYIRVADISADRIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAKDEAEQKEAIATLN 535
Query: 144 PQDGSVISDSSSMSSS 159
QD V+ SS+M+ +
Sbjct: 536 KQDDVVM--SSAMAEA 549
>gi|149675741|dbj|BAF64753.1| ribosomal protein S1 [Shewanella livingstonensis]
Length = 555
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP LE
Sbjct: 258 GLKQLGEDPWLE 269
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W+ +++R N D G+ D+G FI L
Sbjct: 325 GDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFATRYNKGDKVSGKIKSITDFGIFIGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D +GDE+ V+ +D E+ RI+L +KQ E+D
Sbjct: 384 --DG--GIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQTEDD 439
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
P L + G+V+ + S + T+E
Sbjct: 440 PFNAYLAD--KKKGTVVHGTVSAVDAKGVTVE 469
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W ++N GDEV V V+ ID E+ RI+L +KQ + +
Sbjct: 298 -----EGVEGLVHVSEMDWTNKHIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVN 352
Query: 134 P 134
P
Sbjct: 353 P 353
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S D I+D + + GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYIRVADISADRIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAKDEAEQKEAIATLN 535
Query: 144 PQDGSVISDSSSMSSS 159
QD V+ SS+M+ +
Sbjct: 536 KQDDVVM--SSAMAEA 549
>gi|88810653|ref|ZP_01125910.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
gi|88792283|gb|EAR23393.1| 30S ribosomal protein S1 [Nitrococcus mobilis Nb-231]
Length = 563
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 19/153 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYG 68
L G + KVI+ + +V S + V +YS+ +E + G+ DYG
Sbjct: 147 LEGKDLEFKVIKLDPRRNNVVVSRRAVVEEEYSAEREALLEKLQEGQVLKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +++N GDEV VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGIDGLLHIT------DMAWRRVKHPSEVVNVGDEVDVKVLKFDRERNRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
QL EDP E + + P+ V ++++ S
Sbjct: 261 QLGEDP-WENIARRYPESSRVFGRVTNITDYGS 292
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W++++++ N D G+ D+G F+ L
Sbjct: 325 GEEVEVMVLDIDEERRRVSLGMKQCQANPWDEFAAKNNKGDHVCGQIKSITDFGIFVGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+S++SW++ ++ +G+EV V+ +D E+ RI+L IKQLE+D
Sbjct: 384 ----AGGIDGLVHLSDLSWNITGEEAVRRYKKGEEVETVVLSVDPERERISLGIKQLEQD 439
Query: 134 PL 135
PL
Sbjct: 440 PL 441
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E ++ K + W + R GR DYG+F+ +
Sbjct: 238 GDEVDVKVLKFDRERNRVSLGLKQLGEDPWENIARRYPESSRVFGRVTNITDYGSFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + + ++ G+EV V V+ ID E+ R++L +KQ + +
Sbjct: 298 -----EGVEGLVHVSEMDWTNKNVNPAKVVTIGEEVEVMVLDIDEERRRVSLGMKQCQAN 352
Query: 134 PLLETLEK 141
P E K
Sbjct: 353 PWDEFAAK 360
Score = 35.8 bits (81), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
G + +++ + D R L EGD V K + +DR I LSIK ++ E++E
Sbjct: 476 GYLRAADIGRQRVDDARTALGEGDAVEAKFMAVDRRNRMINLSIKAKDQQTERESVE 532
>gi|406903916|gb|EKD45849.1| hypothetical protein ACD_69C00107G0001 [uncultured bacterium]
Length = 585
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW I+ ++L GDEVRVKV+K DR+K+R++L
Sbjct: 238 DYGAFIDLGGIDGLLHIT------DISWKRIRHPSELLKLGDEVRVKVLKYDRDKNRVSL 291
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 292 GLKQLAEDP 300
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 16/141 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K++H G + V V++ +EE +++ K W +YS+ +I G
Sbjct: 347 NKNVHPSKVVSQGQEVEVMVLEIDEERRRISLGMKQCKSNPWKEYSNLHAKGEIIKGTIK 406
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWD--LIQDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + IR+ +G E+ ++ ID E+
Sbjct: 407 SITDFGIFIGLEG-----DIDGLVHLSDISWSDPGEKAIRN-YKKGQEIETVILAIDAER 460
Query: 121 SRITLSIKQLEEDPLLETLEK 141
RI+L IKQLE+D + LEK
Sbjct: 461 ERISLGIKQLEQDIYAQYLEK 481
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVH+SE++W +++ ++++G EV V V++ID E+ RI
Sbjct: 323 DYGCFVEIE-----SGIEGLVHMSEINW-TNKNVHPSKVVSQGQEVEVMVLEIDEERRRI 376
Query: 124 TLSIKQLEEDPLLE 137
+L +KQ + +P E
Sbjct: 377 SLGMKQCKSNPWKE 390
>gi|443311823|ref|ZP_21041447.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
gi|442778223|gb|ELR88492.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
Length = 331
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LLGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|163748940|ref|ZP_02156191.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
gi|161331316|gb|EDQ02204.1| 30S ribosomal protein S1 [Shewanella benthica KT99]
Length = 555
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIDVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R N D G+
Sbjct: 313 NKNIHPSKVVSLGDEVEVLVLDIDEERRRISLGLKQCKSNPWDDFAERFNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVAD-YKKGDEIHAVVLSVDPER 426
Query: 121 SRITLSIKQLEEDPL---LETLEKVIPQDGSVIS-DSSSMSSSNSNTIE 165
RI+L +KQ E+DP L +K +G+VI+ D+ ++ + T+E
Sbjct: 427 ERISLGVKQTEDDPFNAYLSDKKKGAVVNGTVIAVDAKGVTVQLAETVE 475
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDEVEVLVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VS++S + I+D + + GD + K + +DR+ I+LSIK +E E + +
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDAIEAKFMGVDRKNRTISLSIKAKDEAEEKEAMASLN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q+ SV SS+M+ +
Sbjct: 536 KQEESVA--SSAMAEA 549
>gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 397
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVED-----IFVGR-----DYG 68
+ G I +KVI+ + + +LV SE+ A+ W + +E + GR +G
Sbjct: 165 MVGQNIPLKVIEVDRDRNRLVLSERAAMQRWRQSQKERLLETLEPGAVVTGRVNQLTPFG 224
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL H+SE+SW + R++L G EV+V V+++DR++ RI LS++
Sbjct: 225 AFIDLGGADGL------AHISELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLR 278
Query: 129 QLEEDP 134
+L+ DP
Sbjct: 279 RLQPDP 284
>gi|300865634|ref|ZP_07110407.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300336361|emb|CBN55557.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 369
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|301299466|ref|ZP_07205741.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852929|gb|EFK80538.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 397
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K+LV +E++A ++ D+ G+ ++GAFI+L DGL VHVSE+S
Sbjct: 178 KELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFINLGGFDGL------VHVSEIS 231
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ + D L G EV+VKV+ +D EK RI+LSIKQ +P + E+V +G V+
Sbjct: 232 YERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQV--AEGDVLEG 289
Query: 153 SSSMSSSNSNTIEPLPGL 170
+ +S +E LPG+
Sbjct: 290 TVKRLTSFGAFVEVLPGV 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E ++ S K + W + +V D+ G +GAF+ +
Sbjct: 244 VGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVEV 303
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L + GLVH+S++S I ++L G++V+VKV+ +D R+ LSIK L+E
Sbjct: 304 -----LPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKALQEK 358
Query: 134 PLLETLE 140
P +E E
Sbjct: 359 PAVEKKE 365
>gi|406980774|gb|EKE02336.1| hypothetical protein ACD_20C00399G0021 [uncultured bacterium]
Length = 369
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 20/168 (11%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----D 66
+GL G I K+++A+ + KL+ S E++ V + ++V+ + G D
Sbjct: 157 EGLIGQDIPAKILEADPKRNKLILSQRLALAEEREKVVENVIASLHVDQLVEGEVVRIAD 216
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI + DGL + +SE+SW ++ DIL+ G V+VKV+KID E +RI+LS
Sbjct: 217 FGAFIDINGIDGL------LPISEMSWQRVKHPSDILSLGQHVQVKVLKIDTELNRISLS 270
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
+K++EE+P ++ + ++G V+ + ++ I+ PG+ A+
Sbjct: 271 LKRMEENPWVKIEGQF--EEGQVVKGIVNKITNFGAFIDIFPGVEALL 316
>gi|302847311|ref|XP_002955190.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
gi|300259482|gb|EFJ43709.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
Length = 431
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 15/122 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVG-----RDYGAFIH 72
L G + VK ++ +EE ++LVFS K A V N V D+ G + YGAFI
Sbjct: 270 LIGYELQVKFLEVDEEAERLVFSHKRASSMVTNDVQG-FKVGDVVAGVVQSVKPYGAFID 328
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
L +TGL+HVS++S D + + IL EGD+++V ++ DR++ R+TLS K+LE
Sbjct: 329 LG------GVTGLLHVSQLSHDRVLVLDKILAEGDKIKVMILSQDRDRGRVTLSTKKLEP 382
Query: 133 DP 134
P
Sbjct: 383 TP 384
>gi|294140845|ref|YP_003556823.1| 30S ribosomal protein S1 [Shewanella violacea DSS12]
gi|293327314|dbj|BAJ02045.1| ribosomal protein S1 [Shewanella violacea DSS12]
Length = 555
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIDVKVLKYDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP LE + K P++
Sbjct: 258 GLKQLGEDPWLE-ISKRYPEN 277
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ ++ R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKVNPWDDFAERFNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNGTGEEAVAD-YKKGDEINAVVLSVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ E+DP L + G+V+ + + TIE
Sbjct: 427 ERISLGVKQTEDDPFNAYLAD--KKKGAVVHGTVVAVDAKGVTIE 469
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + S R GR DYG F+ +
Sbjct: 238 GDEIDVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VS++S + I+D + + GD V K + +DR+ I+LSI+ +E E + +
Sbjct: 476 GYLRVSDISRERIEDASTVYSVGDAVESKFMGVDRKNRTISLSIRAKDEAEEKEAMASLN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q+ +V+ SS+M+ +
Sbjct: 536 KQEDAVM--SSAMAEA 549
>gi|297588505|ref|ZP_06947148.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
gi|297573878|gb|EFH92599.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
Length = 675
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G + KV+ +E+ ++LV S E+ + +K + V + G+ D+GAF
Sbjct: 424 GETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWENITVGETITGKVQRLTDFGAF 483
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL +H+S++SW+ I+ D+L GDE+ V+K +REK+RI+L +KQL
Sbjct: 484 IDLGGVDGL------LHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQL 537
Query: 131 EEDPL 135
++ P
Sbjct: 538 QQKPF 542
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L +G+ GLVHVSE+S + + D LN GD V+VK+++I+ EK RI L
Sbjct: 564 DFGAFVKL--AEGI---EGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIAL 618
Query: 126 SIKQLEEDP 134
S+K L P
Sbjct: 619 SMKALLPKP 627
>gi|125973232|ref|YP_001037142.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain-containing protein [Clostridium thermocellum ATCC
27405]
gi|281417431|ref|ZP_06248451.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|385778858|ref|YP_005688023.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|419723125|ref|ZP_14250260.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
gi|419724971|ref|ZP_14252026.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|125713457|gb|ABN51949.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum ATCC 27405]
gi|281408833|gb|EFB39091.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|316940538|gb|ADU74572.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|380771591|gb|EIC05456.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|380780892|gb|EIC10555.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
Length = 694
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 77/128 (60%), Gaps = 18/128 (14%)
Query: 26 ISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
I+V++++ NE+ +K+V S EK+A+ N+ + + V +F G D+GAF+ +
Sbjct: 444 ITVRILELNEKRRKVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDI 503
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL +H+SE+SW ++ ++L GDEV V V++ D+EK +++L +++E++
Sbjct: 504 GGVDGL------IHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDN 557
Query: 134 PLLETLEK 141
P + EK
Sbjct: 558 PWYKIEEK 565
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIF---VGR--DYGAFIHLR 74
G + V V++ ++E KK+ + D W K + V D+ V R +GAF+ L
Sbjct: 530 GDEVEVTVLEFDKEKKKVSLGYRKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELE 589
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE-D 133
+ GLVH+S++S + + D L G +V K+I++D E +I+LSIK++ D
Sbjct: 590 -----KGVDGLVHISQISSKRLAKVEDALEIGMKVDAKIIEVDGENKKISLSIKEVMPID 644
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
P E +DGS ++S+ + + E + E+L+ +
Sbjct: 645 PPSSKSESK-AKDGSEAKETSANTEEEAEPTEHREDMNVTVEDLVSK 690
>gi|399544568|ref|YP_006557876.1| 30S ribosomal protein S1 [Marinobacter sp. BSs20148]
gi|399159900|gb|AFP30463.1| 30S ribosomal protein S1 [Marinobacter sp. BSs20148]
Length = 564
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP +E
Sbjct: 258 GLKQLGEDPWVE 269
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K V W +S N D G+
Sbjct: 313 NKNIHPSKVVQVGDEVGVMILDIDEERRRISLGIKQCVSNPWEDFSGNFNKGDKISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDEV ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-YKKGDEVDTVILSVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQLE DP E ++ + GS++ S + + TI
Sbjct: 427 ERISLGIKQLESDPFAEFVQ--LNDKGSIVKGIVSAVDAKAATI 468
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCVSNP 353
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ ++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K
Sbjct: 473 EVEAILKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVK 520
>gi|192362187|ref|YP_001982579.1| 30S ribosomal protein S1 [Cellvibrio japonicus Ueda107]
gi|190688352|gb|ACE86030.1| ribosomal protein S1 [Cellvibrio japonicus Ueda107]
Length = 558
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPGEIVNVGDEIEVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP ++ + K P+ V + ++++
Sbjct: 258 GLKQLGEDPWIQ-ITKRYPEGARVKAKVTNLT 288
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G I V V+ +EE +++ K W+ ++ D G+
Sbjct: 314 KNIHPSKVVQLGDEIEVMVLDIDEERRRISLGLKQCQENPWDAFARTCAKGDKITGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW + ++ +GDE+ V+ ID E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWHEAGEEAVRKYKKGDEIETVVLAIDPERER 428
Query: 123 ITLSIKQLEEDPLLE 137
I+L IKQLE DP E
Sbjct: 429 ISLGIKQLEADPFSE 443
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GL+HVSE+ W ++I ++ GDE+ V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLIHVSEMDW-TNKNIHPSKVVQLGDEIEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ +E+P
Sbjct: 343 SLGLKQCQENP 353
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
G++ SE+S + ++D R++L GDEV K+I +DR+ I+LS+K
Sbjct: 476 GVLKASELSREKVEDARNLLKAGDEVEAKIIAVDRKNRTISLSVK 520
>gi|428210328|ref|YP_007094681.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428012249|gb|AFY90812.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 356
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 11/114 (9%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 164 LPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI------G 217
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118]
gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118]
Length = 399
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K+LV +E++A ++ D+ G+ ++GAFI L DGL VHVSE+S
Sbjct: 180 KELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGVDGL------VHVSEIS 233
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ + D L G EV+VKV+ +D EK RI+LSIKQ +P + E+V +G V+
Sbjct: 234 YERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQV--AEGDVLEG 291
Query: 153 SSSMSSSNSNTIEPLPGL 170
+ +S +E LPG+
Sbjct: 292 TVKRLTSFGAFVEVLPGV 309
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E ++ S K + W + +V D+ G +GAF+ +
Sbjct: 246 VGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVEV 305
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L + GLVH+S++S I ++L G++V+VKV+ +D R+ LSIK L+E
Sbjct: 306 -----LPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKALQEK 360
Query: 134 PLLETLE 140
P +E E
Sbjct: 361 PAVEKKE 367
>gi|33519839|ref|NP_878671.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
gi|33504184|emb|CAD83446.1| 30S ribosomal protein S1 [Candidatus Blochmannia floridanus]
Length = 575
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 18/128 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFVG------RDYG 68
L G KVI+ + + +V S + A+ ++S+ + E I + DYG
Sbjct: 147 LEGQTCDFKVIKLDHKRNNVVVSRRAAIEFEHSAERDQLLHKLHEGIIIKGVVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL H+T +++W ++ DI++ GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFIDLGGIDGLLHIT------DIAWKRVKHPSDIISIGDEISVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDPLL 136
QLE+DP +
Sbjct: 261 QLEDDPWI 268
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
K+IH G I V V+ +E+ +++ K W ++S D GR
Sbjct: 312 TNKNIHPSKVVEVGECIEVMVLDIDEDRRRISLGLKQCKVNPWQRFSQIYARGDRVTGRI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI--LNEGDEVRVKVIKIDRE 119
D+G FI L DG+ GLVH+S+++W + + I +GDEV V+++D E
Sbjct: 372 KSITDFGIFIGL--EDGI---DGLVHLSDIAWSVSNNNELISQYKKGDEVTAVVLQVDSE 426
Query: 120 KSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
+ RI+LSIKQL EDPL L I + GS++S
Sbjct: 427 RERISLSIKQLTEDPLNIFLS--IHKKGSIVS 456
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ISVKV++ + E ++ K D W D G+ DYG FI +
Sbjct: 238 GDEISVKVLKFDRERTRVSLGLKQLEDDPWISIVRNYKEGDKITGKVTNLTDYGCFIEIA 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+SE+ W ++I ++ G+ + V V+ ID ++ RI+L +KQ +
Sbjct: 298 GG-----VEGLVHISEMDW-TNKNIHPSKVVEVGECIEVMVLDIDEDRRRISLGLKQCKV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
gi|385840473|ref|YP_005863797.1| 30S ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
gi|417788386|ref|ZP_12436069.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
gi|417810232|ref|ZP_12456911.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
gi|418961421|ref|ZP_13513307.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
gi|334308563|gb|EGL99549.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
gi|335349028|gb|EGM50528.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
gi|380343953|gb|EIA32300.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
Length = 397
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K+LV +E++A ++ D+ G+ ++GAFI L DGL VHVSE+S
Sbjct: 178 KELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGVDGL------VHVSEIS 231
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ + D L G EV+VKV+ +D EK RI+LSIKQ +P + E+V +G V+
Sbjct: 232 YERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQV--AEGDVLEG 289
Query: 153 SSSMSSSNSNTIEPLPGL 170
+ +S +E LPG+
Sbjct: 290 TVKRLTSFGAFVEVLPGV 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E ++ S K + W + +V D+ G +GAF+ +
Sbjct: 244 VGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVEV 303
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L + GLVH+S++S I ++L G++V+VKV+ +D R+ LSIK L+E
Sbjct: 304 -----LPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKALQEK 358
Query: 134 PLLETLE 140
P +E E
Sbjct: 359 PAVEKKE 365
>gi|126669095|ref|ZP_01740026.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
gi|126626450|gb|EAZ97116.1| 30S ribosomal protein S1 [Marinobacter sp. ELB17]
Length = 455
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 95 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSL 148
Query: 126 SIKQLEEDPLLE 137
+KQL EDP +E
Sbjct: 149 GLKQLGEDPWVE 160
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K V W +S N D G+
Sbjct: 204 NKNIHPSKVVQVGDEVGVMILDIDEERRRISLGIKQCVSNPWEDFSGNFNKGDRISGKIK 263
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDEV ++ +D E+
Sbjct: 264 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-YKKGDEVDTVILSVDPER 317
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQLE DP E ++ + GS++ S + + TI
Sbjct: 318 ERISLGIKQLESDPFAEFVQ--LNDKGSIVKGVVSAVDAKAATI 359
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI
Sbjct: 180 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRRI 233
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 234 SLGIKQCVSNP 244
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K
Sbjct: 367 AILKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVK 411
>gi|372267290|ref|ZP_09503338.1| 30S ribosomal protein S1 [Alteromonas sp. S89]
Length = 559
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE+SR++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVNVGDEIEVKVLKFDRERSRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSV 149
+KQL EDP + ++++ P++ V
Sbjct: 258 GLKQLGEDPWV-SIKQRYPENSRV 280
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V ++ +EE +++ K W+ ++ + D G+
Sbjct: 314 KNIHPSKVVNVGDEVEVMILDIDEERRRISLGIKQCQENPWDAFARKFAKGDKISGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ ++ ID ++
Sbjct: 374 ITDFGIFIGL---DG--SIDGLVHLSDISWNEAGEEAVRK-FKKGDELETVILGIDSDRE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE DP
Sbjct: 428 RISLGIKQLESDPF 441
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K ++ +Y V+ + DYG F L
Sbjct: 238 GDEIEVKVLKFDRERSRVSLGLKQLGEDPWVSIKQRYPENSRVKAVITNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V ++ ID E+ RI+L IKQ +E
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMILDIDEERRRISLGIKQCQE 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
G++ SE+S D ++D R+ L EG+EV K+ +DR+ I+LSIK ++D
Sbjct: 476 GVLRASEISRDKVEDARNALKEGEEVETKITSVDRKNRVISLSIKAKDQD 525
>gi|428316075|ref|YP_007113957.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
gi|428239755|gb|AFZ05541.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
Length = 364
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|417926498|ref|ZP_12569896.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna SY403409CC001050417]
gi|341589013|gb|EGS32380.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna SY403409CC001050417]
Length = 675
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G + KV+ +E+ ++LV S E+ + +K + V + G+ D+GAF
Sbjct: 424 GETLVCKVLNIDEKKRRLVLSHRAVVEAERKEIEDKAWENITVGEKITGKVQRLTDFGAF 483
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL +H+S++SW+ I+ D+L GDE+ V+K +REK+RI+L +KQL
Sbjct: 484 IDLGGVDGL------LHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQL 537
Query: 131 EEDPL 135
++ P
Sbjct: 538 QQKPF 542
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L +G+ GLVHVSE+S + + D LN GD V+VK+++I+ EK RI L
Sbjct: 564 DFGAFVKL--AEGI---EGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIAL 618
Query: 126 SIKQLEEDP 134
S+K L P
Sbjct: 619 SMKALLPKP 627
>gi|303233770|ref|ZP_07320424.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna BVS033A4]
gi|302495204|gb|EFL54956.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna BVS033A4]
Length = 675
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G + KV+ +E+ ++LV S E+ + +K + V + G+ D+GAF
Sbjct: 424 GETLVCKVLNIDEKKRRLVLSHRAVVEAERKEIEDKAWENITVGEKITGKVQRLTDFGAF 483
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL +H+S++SW+ I+ D+L GDE+ V+K +REK+RI+L +KQL
Sbjct: 484 IDLGGVDGL------LHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQL 537
Query: 131 EEDPL 135
++ P
Sbjct: 538 QQKPF 542
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L +G+ GLVHVSE+S + + D LN GD V+VK+++I+ EK RI L
Sbjct: 564 DFGAFVKL--AEGI---EGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIAL 618
Query: 126 SIKQLEEDP 134
S+K L P
Sbjct: 619 SMKALLPKP 627
>gi|94499395|ref|ZP_01305932.1| ribosomal protein S1 [Bermanella marisrubri]
gi|94428149|gb|EAT13122.1| ribosomal protein S1 [Oceanobacter sp. RED65]
Length = 560
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIQVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P++ V + ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPENTKVTAKVTNLT 288
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W ++SS+ N D G+
Sbjct: 314 KNIHPSKVVQVGDDVEVMVLDIDEERRRISLGIKQCQVNPWEEFSSQFNKGDKISGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ +D +GDE+ ++ ID E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNEQGEDAVRNYKKGDELETIILSIDPERER 428
Query: 123 ITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
I+L +KQLE DP E + + G+++ + + TIE G+ A
Sbjct: 429 ISLGVKQLERDPFAEFVAE--NDKGTIVKGKVIEVDAKAATIEIAEGVEATL 478
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GD+V V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDDVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDPLLE 137
+L IKQ + +P E
Sbjct: 343 SLGIKQCQVNPWEE 356
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ SE+S D ++D R+ L EGDEV K+I +DR+ I LS+K +E
Sbjct: 478 LRASEISRDRVEDARNALKEGDEVEAKIISVDRKNRNIALSVKSKDE 524
>gi|256003709|ref|ZP_05428697.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
gi|255992270|gb|EEU02364.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
Length = 419
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 77/128 (60%), Gaps = 18/128 (14%)
Query: 26 ISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
I+V++++ NE+ +K+V S EK+A+ N+ + + V +F G D+GAF+ +
Sbjct: 169 ITVRILELNEKRRKVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDI 228
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL +H+SE+SW ++ ++L GDEV V V++ D+EK +++L +++E++
Sbjct: 229 GGVDGL------IHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDN 282
Query: 134 PLLETLEK 141
P + EK
Sbjct: 283 PWYKIEEK 290
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIF---VGR--DYGAFIHLR 74
G + V V++ ++E KK+ + D W K + V D+ V R +GAF+ L
Sbjct: 255 GDEVEVTVLEFDKEKKKVSLGYRKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELE 314
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE-D 133
+ GLVH+S++S + + D L G +V K+I++D E +I+LSIK++ D
Sbjct: 315 -----KGVDGLVHISQISSKRLAKVEDALEIGMKVDAKIIEVDGENKKISLSIKEVMPID 369
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELL 178
P E +DGS ++S+ + + E + E+L+
Sbjct: 370 PPSSKSESK-AKDGSEAKETSANTEEEAEPTEHREDMNVTVEDLV 413
>gi|334121254|ref|ZP_08495327.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333455342|gb|EGK83994.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 371
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|335420693|ref|ZP_08551730.1| 30S ribosomal protein S1 [Salinisphaera shabanensis E1L3A]
gi|334894429|gb|EGM32625.1| 30S ribosomal protein S1 [Salinisphaera shabanensis E1L3A]
Length = 561
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +H++++SW I+D D++N G+E+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGL------LHITDMSWKRIKDPTDVVNVGEEIEVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL +DP ++ +
Sbjct: 258 GLKQLGDDPWVDIARR 273
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 26/162 (16%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V++ +EE +++ K W +++ D G+ D+G F+ L
Sbjct: 325 GDEVEVMVLEIDEERRRISLGMKQCKSNPWEDFAANHQRNDTVRGQIKSITDFGIFVGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P ++ GLVH+S++SW D +++ ++GDEV V+ ID ++ RI+L IKQL +D
Sbjct: 384 -PG---NIDGLVHLSDLSWNDAGEEVVREYSKGDEVEAVVLSIDADRERISLGIKQLAQD 439
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
P+ GS ++D+ S S TI+ + GA +
Sbjct: 440 PI-----------GSFVADNPK-GSVVSGTIDSVDARGATVD 469
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 20/124 (16%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVW----NKY--SSRV--NVEDIFVGRDYGAFI 71
G I VKV++ + E ++ K D W +Y S+R+ NV +I DYGAF+
Sbjct: 238 GEEIEVKVLKFDRERTRVSLGLKQLGDDPWVDIARRYPESTRLFGNVTNI---TDYGAFV 294
Query: 72 HLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + GLVHVSE+ W + + I++ GDEV V V++ID E+ RI+L +KQ
Sbjct: 295 EIE-----EGVEGLVHVSEMDWTNKNVNPGQIVDVGDEVEVMVLEIDEERRRISLGMKQC 349
Query: 131 EEDP 134
+ +P
Sbjct: 350 KSNP 353
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G + S++S D ++D R L+EGD V + + +DR I+LSI+ +E + +
Sbjct: 474 VVGYIRASDISRDRVEDARTALSEGDAVEARFVGVDRRNRTISLSIRAKDEKDEQQAMRD 533
Query: 142 VIPQDGSVISDS 153
D S + S
Sbjct: 534 YADTDASTGTTS 545
>gi|375091621|ref|ZP_09737910.1| ribosomal protein S1 [Helcococcus kunzii ATCC 51366]
gi|374563143|gb|EHR34465.1| ribosomal protein S1 [Helcococcus kunzii ATCC 51366]
Length = 402
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 22/125 (17%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G + KVI +E+ K++V S + D VW + I G+ D+GAF
Sbjct: 154 GKELDTKVINIDEKKKRVVLSSRALQEEKLDTVWETLIP----DAIVTGKVVRMVDFGAF 209
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL +H+S++SWD I+ D L G EV VK++K +REK+R++L +KQL
Sbjct: 210 VDLGGVDGL------IHISDISWDRIEKPSDALEVGQEVEVKILKANREKNRVSLGLKQL 263
Query: 131 EEDPL 135
E P
Sbjct: 264 TEKPF 268
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 23/173 (13%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-DYGAFIHLR 74
G + VK+++AN E +K+L D N + VE V D+GAF+ L+
Sbjct: 239 GQEVEVKILKANREKNRVSLGLKQLTEKPFDVFLNNHKVGDVVEGEVVNLLDFGAFLKLK 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI------K 128
+ GLVHVS++S + ++ D+LN GD++ VK+++ID E RI+LS K
Sbjct: 299 -----EGVEGLVHVSQISTEHVEKPSDVLNVGDKMEVKILEIDEENQRISLSKRALMEPK 353
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQED 181
Q E++ + + +K P+ + + ++ + N+ +G + +EL ED
Sbjct: 354 QTEKENKVNSEKKQAPRKNNNVKNTPKVEEENTFG----SNIGDLLDELNLED 402
>gi|434389320|ref|YP_007099931.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428020310|gb|AFY96404.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 339
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 11/114 (9%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 164 LPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI------G 217
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>gi|404493519|ref|YP_006717625.1| 30S ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
gi|77545561|gb|ABA89123.1| ribosomal protein S1 [Pelobacter carbinolicus DSM 2380]
Length = 573
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW + D+L GD+++VKV+K DREK R++L
Sbjct: 217 DYGAFIDLGGIDGLLHIT------DMSWGRVAHPSDVLAVGDKIKVKVLKFDREKERVSL 270
Query: 126 SIKQLEEDPLLETLEK 141
+KQL DP L EK
Sbjct: 271 GLKQLTADPWLSVAEK 286
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHL 73
G I VKV++ + E +++ K +V KY + V V DYGAF+ L
Sbjct: 250 VGDKIKVKVLKFDREKERVSLGLKQLTADPWLSVAEKYPTGNRVSGKVVSLTDYGAFVEL 309
Query: 74 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GL+HVSE+SW I+ ILN GD++ V+ +D RI+L +KQ+E
Sbjct: 310 D-----EGVEGLIHVSEMSWTKRIKHPSKILNIGDDIESVVLAVDVSNRRISLGLKQIER 364
Query: 133 DP 134
+P
Sbjct: 365 NP 366
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ + DG+ GLVH+S++SW I+ ++ +GD V+ V+ ID+E R +
Sbjct: 389 DFGIFVGV--DDGI---DGLVHISDLSWTKRIKHPSELFKKGDVVKAVVLNIDQENERFS 443
Query: 125 LSIKQLEEDPLLETLEKVIPQDGSVIS 151
L IKQL DP + P G++IS
Sbjct: 444 LGIKQLASDPWQTIATRYAP--GTMIS 468
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++ V+ ++E ++ K W ++R + G+ D+G F+ +
Sbjct: 425 GDVVKAVVLNIDQENERFSLGIKQLASDPWQTIATRYAPGTMISGKVTSVTDFGIFLEVE 484
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ GL+HVSE+S + + +D GD + V+ +D E +I LSIK +
Sbjct: 485 -----EGIEGLIHVSEISKEKVDSPKDFAKVGDNLEAVVLHVDTEDKKIALSIKHV 535
>gi|261253452|ref|ZP_05946025.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955955|ref|ZP_12598953.1| 30S ribosomal protein S1 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260936843|gb|EEX92832.1| SSU ribosomal protein S1p [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342811475|gb|EGU46512.1| 30S ribosomal protein S1 [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G++++ + + TIE G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAE--KKKGTLVNGTVVAVDAKGATIELEEGV 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SEVS D ++D IL+ GD V K +DR+ I LSIK + EE + +L
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASLN 535
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
K +D +S ++ ++ + G
Sbjct: 536 K---------ADEASFGNAMADAFKAAKG 555
>gi|260776375|ref|ZP_05885270.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
gi|260607598|gb|EEX33863.1| SSU ribosomal protein S1p [Vibrio coralliilyticus ATCC BAA-450]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G +++ + + + TIE G+
Sbjct: 427 ERISLGVKQMENDPFNAYVSE--KKKGVLVNGTVTAVDAKGATIELEEGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SEVS D ++D IL+ GD V K +DR+ I LS+K + EE + +L
Sbjct: 476 GYIRASEVSRDRVEDASLILSVGDSVEAKFTGVDRKNRVINLSVKAKDEAEEQEAMASLN 535
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
K +D +S ++ ++ + G
Sbjct: 536 K---------ADDASFGNAMADAFKAAKG 555
>gi|323495049|ref|ZP_08100138.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
gi|323310706|gb|EGA63881.1| 30S ribosomal protein S1 [Vibrio brasiliensis LMG 20546]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G +++ + + + TIE G+
Sbjct: 427 ERISLGVKQMENDPFNAYVSE--KKKGVLVNGTVTAVDAKGATIELEEGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SEVS D ++D IL+ GD V K +DR+ I LSIK + EE + +L
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASLN 535
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
K +D +S ++ ++ + G
Sbjct: 536 K---------ADDASFGNAMADAFKAAKG 555
>gi|343503065|ref|ZP_08740900.1| 30S ribosomal protein S1 [Vibrio tubiashii ATCC 19109]
gi|418480499|ref|ZP_13049557.1| 30S ribosomal protein S1 [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342812735|gb|EGU47727.1| 30S ribosomal protein S1 [Vibrio tubiashii ATCC 19109]
gi|384571891|gb|EIF02419.1| 30S ribosomal protein S1 [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G++++ + + TIE G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAE--KKKGTLVNGTVVAVDAKGATIELEEGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SEVS D ++D IL+ GD V K +DR+ I LSIK + EE + +L
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASLN 535
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
K +D +S ++ ++ + G
Sbjct: 536 K---------ADDASFGNAMADAFKAAKG 555
>gi|28898804|ref|NP_798409.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
gi|417319447|ref|ZP_12106005.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus 10329]
gi|433658133|ref|YP_007275512.1| SSU ribosomal protein S1p [Vibrio parahaemolyticus BB22OP]
gi|28807023|dbj|BAC60293.1| ribosomal protein S1 [Vibrio parahaemolyticus RIMD 2210633]
gi|328474637|gb|EGF45442.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus 10329]
gi|432508821|gb|AGB10338.1| SSU ribosomal protein S1p [Vibrio parahaemolyticus BB22OP]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + T+E G+
Sbjct: 427 ERISLGIKQMENDPFNAYVAD--NKKGTLVNATVTAVDAKGATVEIAEGV 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDEAAFGNAMADA 549
>gi|424033428|ref|ZP_17772842.1| ribosomal protein S1 [Vibrio cholerae HENC-01]
gi|424042692|ref|ZP_17780374.1| ribosomal protein S1 [Vibrio cholerae HENC-02]
gi|408874677|gb|EKM13845.1| ribosomal protein S1 [Vibrio cholerae HENC-01]
gi|408887534|gb|EKM26083.1| ribosomal protein S1 [Vibrio cholerae HENC-02]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQ+E DP
Sbjct: 427 ERISLGIKQMENDPF 441
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDEAAFGNAMADA 549
>gi|87308954|ref|ZP_01091092.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
gi|87288297|gb|EAQ80193.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
Length = 536
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV + + E K+ S +D + W K + +V I G+ D+GAF+ +
Sbjct: 375 GQAVRVKVTKIDPETGKIGLSIRDTLENPWQKVAEEFSVGAIINGKVTKIMDFGAFVEI- 433
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVHVSEVS + I +L G++V VKV+ ID+EK RI LSIK L P
Sbjct: 434 ----APGIEGLVHVSEVSHTRVSRIESVLKAGEKVEVKVVNIDKEKRRIGLSIKALSPAP 489
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 20/132 (15%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKY---SSRVNVEDIFVGR----------DYGA 69
G + V +AN E + LV S + AV K S + + + VG+ D+GA
Sbjct: 286 GQKLQCLVTEANPERRNLVLSAR-AVAEKAKEDSRKETMVTLQVGQMRDGTVTRLQDFGA 344
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ + DGL VHVS++SWD ++ D L+EG VRVKV KID E +I LSI+
Sbjct: 345 FVDIGGVDGL------VHVSQISWDRVKHPSDALSEGQAVRVKVTKIDPETGKIGLSIRD 398
Query: 130 LEEDPLLETLEK 141
E+P + E+
Sbjct: 399 TLENPWQKVAEE 410
>gi|323498283|ref|ZP_08103285.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
gi|323316711|gb|EGA69720.1| 30S ribosomal protein S1 [Vibrio sinaloensis DSM 21326]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G++++ + + + TIE + G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAE--NKKGALVNGTVTAVDAKGATIELVEGV 474
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SEVS D I+D IL+ GD V K +DR+ I LSIK + EE + +L
Sbjct: 476 GYLRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASLN 535
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
K +D +S ++ ++ + G
Sbjct: 536 K---------ADDASFGNAMADAFKAAKG 555
>gi|269961758|ref|ZP_06176118.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
gi|424046845|ref|ZP_17784407.1| ribosomal protein S1 [Vibrio cholerae HENC-03]
gi|269833541|gb|EEZ87640.1| 30S ribosomal protein S1 [Vibrio harveyi 1DA3]
gi|408884905|gb|EKM23633.1| ribosomal protein S1 [Vibrio cholerae HENC-03]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ+E DP
Sbjct: 427 ERISLGVKQMENDPF 441
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDEAAFGNAMADA 549
>gi|429205274|ref|ZP_19196551.1| 30S ribosomal protein S1 [Lactobacillus saerimneri 30a]
gi|428146346|gb|EKW98585.1| 30S ribosomal protein S1 [Lactobacillus saerimneri 30a]
Length = 398
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYG 68
G + +K+++ +L+ S E++A ++ V D+ G+ ++G
Sbjct: 155 FKGQTLELKIVEIEPSDNRLILSHKEIAREEREAKKKAVMDKLVVGDVVEGKVARLTNFG 214
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL VHVSE+S++ + D+L G +V+VKV+ +D E+ RI+LSIK
Sbjct: 215 AFIDLGGVDGL------VHVSEISYERVGKPADVLKVGQDVKVKVLAVDEERDRISLSIK 268
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
Q +P E EK+ +G V+ + +S +E LPG+
Sbjct: 269 QTLPEPWEEVAEKI--AEGDVVEGTVKRLTSFGAFVEVLPGV 308
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ +EE ++ S K + W + + ++ D+ G +GAF+ +
Sbjct: 246 GQDVKVKVLAVDEERDRISLSIKQTLPEPWEEVAEKIAEGDVVEGTVKRLTSFGAFVEV- 304
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S I ++L GD+V+VKV+ +D R+ LSIK L+ P
Sbjct: 305 ----LPGVEGLVHISQISHKHIATPNEVLTSGDKVKVKVLNVDAPDHRLALSIKALQAKP 360
>gi|365175178|ref|ZP_09362615.1| ribosomal protein S1 [Synergistes sp. 3_1_syn1]
gi|363613517|gb|EHL65028.1| ribosomal protein S1 [Synergistes sp. 3_1_syn1]
Length = 526
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 28 VKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
VK+I+ + ++LVFS + + + +V+ D+ G +G F++L
Sbjct: 174 VKLIEKDRRKRRLVFSRRSLIEEELTGIRQAFYDQVHEGDVLEGDVSSITSFGVFVNL-- 231
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+SE+SW ++I+ +GD V+VKVI ID+E +RI+LSI+Q +DP
Sbjct: 232 ----GAMEGLVHISELSWQRNAKAKEIVAKGDHVKVKVIGIDKENNRISLSIRQTLDDPW 287
Query: 136 LETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
E+ P G V + + + +E PG+
Sbjct: 288 TTAAERWTP--GKVTEGTVTNLTEFGAFVEIEPGV 320
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI ++E ++ S + D W + R + G ++GAF+ +
Sbjct: 258 GDHVKVKVIGIDKENNRISLSIRQTLDDPWTTAAERWTPGKVTEGTVTNLTEFGAFVEIE 317
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+H+ ++SW I+ +++L +G +V V +I+ D E+ RI+L KQL DP
Sbjct: 318 -----PGVEGLIHIGDLSWTRIKHPKEVLKKGQKVEVSIIETDTERKRISLGYKQL-NDP 371
Query: 135 LLETLEK 141
+ EK
Sbjct: 372 WKDAAEK 378
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 69/121 (57%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKK--LVFSEKDAVWN----KYS--SRVNVEDIFVGRDYGAFIHLR 74
G + V +I+ + E K+ L + + + W KY + V V+ + + D+GAF+ L
Sbjct: 344 GQKVEVSIIETDTERKRISLGYKQLNDPWKDAAEKYQKDAEVPVKVVRIA-DFGAFVELE 402
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+H+S++S +++ +++L+EG EV +V++++ + RI LS++ E+P
Sbjct: 403 -----EGIEGLIHISQLSTQRVENPKEVLSEGQEVTARVLEVNPVERRIRLSLRPANEEP 457
Query: 135 L 135
+
Sbjct: 458 V 458
>gi|352096607|ref|ZP_08957434.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351676257|gb|EHA59411.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 366
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 213 LVAGFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 271
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 272 -----GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 325
>gi|375266127|ref|YP_005023570.1| 30S ribosomal protein S1 [Vibrio sp. EJY3]
gi|369841448|gb|AEX22592.1| 30S ribosomal protein S1 [Vibrio sp. EJY3]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + G++++ + + + T+E G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAD--NKKGTLVNATVTAVDAKGATVEIAEGV 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDDNAFGNAMADA 549
>gi|312882500|ref|ZP_07742241.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369900|gb|EFP97411.1| 30S ribosomal protein S1 [Vibrio caribbenthicus ATCC BAA-2122]
Length = 556
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVTGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G +++ + + + TIE G+
Sbjct: 427 ERISLGVKQMENDPFNAYVSE--KKKGVLVNGTVTAVDAKGATIELEEGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SEVS D ++D IL GD + K +DR+ I LS+K + EE + TL
Sbjct: 476 GYIRASEVSRDRVEDASLILTVGDSIEAKFTGVDRKNRVINLSVKAKDEAEEQEAMATLN 535
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
K +D +S ++ ++ + G
Sbjct: 536 K---------ADDASFGNAMADAFKAAKG 555
>gi|350531886|ref|ZP_08910827.1| 30S ribosomal protein S1 [Vibrio rotiferianus DAT722]
Length = 556
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ+E DP
Sbjct: 427 ERISLGVKQMENDPF 441
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEADEQEAMASIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDEAAFGNAMADA 549
>gi|336054211|ref|YP_004562498.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
gi|333957588|gb|AEG40396.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
Length = 403
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G EV+VKVI ID ++ RI+LSIKQ+
Sbjct: 215 VDVGGVDGL------VHISEISYKHVDKPSDVLKAGQEVKVKVIGIDNDRHRISLSIKQI 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKVI + + ++ S K + + + ++ +N D+F G ++GAF+ +
Sbjct: 243 AGQEVKVKVIGIDNDRHRISLSIKQIEPSPFEQATANLNEGDVFEGEVKSLTNFGAFVEV 302
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G EV+VKV+ ID RI+LSIK
Sbjct: 303 --ADGI---QGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISLSIK 352
>gi|300173425|ref|YP_003772591.1| ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
gi|333398562|ref|ZP_08480375.1| ribosomal protein S1 [Leuconostoc gelidum KCTC 3527]
gi|333446748|ref|ZP_08481690.1| ribosomal protein S1 [Leuconostoc inhae KCTC 3774]
gi|406600093|ref|YP_006745439.1| 30S ribosomal protein S1 [Leuconostoc gelidum JB7]
gi|299887804|emb|CBL91772.1| Ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
gi|406371628|gb|AFS40553.1| ribosomal protein S1 [Leuconostoc gelidum JB7]
Length = 397
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 16/148 (10%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHL 82
I+S K + A E +L +++K S VE V R D+GAF+ L DGL
Sbjct: 173 ILSRKAVAAQERAAQLA-----EIFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL--- 223
Query: 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E E++
Sbjct: 224 ---VHVSEISHDRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRGPWDEAAEQI 280
Query: 143 IPQDGSVISDSSSMSSSNSNTIEPLPGL 170
G+V+ + +E LPG+
Sbjct: 281 AA--GAVLEGTVKRVKDFGAFVEILPGI 306
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 13/123 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 244 GDKVNVKILALDTEKGRISLSIKATQRGPWDEAAEQIAAGAVLEGTVKRVKDFGAFVEI- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD V+VKV+ I + RI+LS+K LEE P
Sbjct: 303 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDTVQVKVLDIKPAEERISLSMKALEEKP 358
Query: 135 LLE 137
E
Sbjct: 359 QRE 361
>gi|156975133|ref|YP_001446040.1| 30S ribosomal protein S1 [Vibrio harveyi ATCC BAA-1116]
gi|388599724|ref|ZP_10158120.1| 30S ribosomal protein S1 [Vibrio campbellii DS40M4]
gi|444427377|ref|ZP_21222761.1| 30S ribosomal protein S1 [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|156526727|gb|ABU71813.1| hypothetical protein VIBHAR_02860 [Vibrio harveyi ATCC BAA-1116]
gi|444239388|gb|ELU50956.1| 30S ribosomal protein S1 [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 556
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ+E DP
Sbjct: 427 ERISLGVKQMENDPF 441
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEADEQEAMASIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDEAAFGNAMADA 549
>gi|262393793|ref|YP_003285647.1| 30S ribosomal protein S1 [Vibrio sp. Ex25]
gi|269966533|ref|ZP_06180616.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
gi|451976115|ref|ZP_21927285.1| 30S ribosomal protein S1 [Vibrio alginolyticus E0666]
gi|262337387|gb|ACY51182.1| SSU ribosomal protein S1p [Vibrio sp. Ex25]
gi|269828877|gb|EEZ83128.1| 30S ribosomal protein S1 [Vibrio alginolyticus 40B]
gi|451929964|gb|EMD77688.1| 30S ribosomal protein S1 [Vibrio alginolyticus E0666]
Length = 556
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQ+E DP
Sbjct: 427 ERISLGIKQMENDPF 441
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEADEQEAMASIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDDNAFGNAMADA 549
>gi|124023909|ref|YP_001018216.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123964195|gb|ABM78951.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9303]
Length = 367
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 214 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDIG- 272
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 273 -----GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 326
>gi|350561176|ref|ZP_08930015.1| ribosomal protein S1 [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349781283|gb|EGZ35591.1| ribosomal protein S1 [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 557
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-----NVEDIFVGR-------DYG 68
L G + K+I+ + +V S + V +YS+ N+++ V + DYG
Sbjct: 147 LEGKELEFKLIKLDRRRNNVVVSRRAVVEQEYSAEREELLKNLQEGIVVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ D++N GDEV VKV+K DRE+ R++L +K
Sbjct: 207 AFLDLGGIDGLLHIT------DMAWKRVKHPSDVVNIGDEVDVKVLKFDRERMRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ +EE +++ K W +++ N + G D+G F+ L
Sbjct: 325 GDEVEVMILDLDEERRRISLGMKQCQANPWEDFAANHNRGEKVRGTIKSITDFGVFVGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GL+H+S++SW + IR+ +GDEV V+ +D E+ RI+L +KQL+
Sbjct: 384 --DG--GIDGLIHLSDLSWQQPGEEAIRN-FKKGDEVEAVVLSVDPERERISLGLKQLDR 438
Query: 133 DPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
DP + + GS++S + + +E G+ I
Sbjct: 439 DPFSSFVAE--HAKGSIVSGVVKEVDAKAAVVELADGIDGIL 478
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEVDVKVLKFDRERMRVSLGLKQLGEDPWENIARRYPTGTRIFGRVTNITDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+ W + + + GDEV V ++ +D E+ RI+L +KQ + +
Sbjct: 298 --DGV---EGLVHVSEMDWTNKNVNPGKAVAIGDEVEVMILDLDEERRRISLGMKQCQAN 352
Query: 134 P 134
P
Sbjct: 353 P 353
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 19/95 (20%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ +++S D ++D R +L+ GD+V K + +D++ I+LSIK K
Sbjct: 474 IDGILRAADISRDRVEDARTVLSVGDQVEAKFMGVDKKTRAISLSIKA-----------K 522
Query: 142 VIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEE 176
+ ++ ++ D SS +++ S LGA+ +E
Sbjct: 523 DVQEEAEIMQDYSSSAATTS--------LGALLKE 549
>gi|33863935|ref|NP_895495.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33635519|emb|CAE21843.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
MIT 9313]
Length = 367
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 214 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI-- 271
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 272 ----GGVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 326
>gi|291572098|dbj|BAI94370.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
Length = 398
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|220909392|ref|YP_002484703.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7425]
gi|219866003|gb|ACL46342.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 321
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +++ V ++ +G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVIGTVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
++GL+H+SE+S D I + N DEV+V +I +D E+ RI+LS KQLE
Sbjct: 218 -----GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLE 268
>gi|430761091|ref|YP_007216948.1| SSU ribosomal protein S1p [Thioalkalivibrio nitratireducens DSM
14787]
gi|430010715|gb|AGA33467.1| SSU ribosomal protein S1p [Thioalkalivibrio nitratireducens DSM
14787]
Length = 557
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-----NVEDIFVGR-------DYG 68
L G + K+I+ + +V S + V +YS+ N+++ V + DYG
Sbjct: 147 LEGKELEFKLIKLDRRRNNVVVSRRAVVEQEYSAEREELLKNLQEGIVVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ D++N GDEV VKV+K DRE+ R++L +K
Sbjct: 207 AFLDLGGIDGLLHIT------DMAWKRVKHPSDVVNIGDEVDVKVLKFDRERMRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ +EE +++ K W+ +++ N + G D+G F+ L
Sbjct: 325 GDEVEVMILDLDEERRRISLGMKQCQANPWDDFAANHNRGEKVRGTIKSITDFGVFVGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GL+H+S++SW + IR+ +GDEV V+ +D E+ RI+L +KQL+
Sbjct: 384 --DG--GIDGLIHLSDLSWQQPGEEAIRN-FKKGDEVEAVVLSVDPERERISLGLKQLDR 438
Query: 133 DPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
DP + + GS++S + + +E G+ I
Sbjct: 439 DPFSSFVAE--HAKGSIVSGVVKEVDAKAAVVELADGIDGIL 478
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEVDVKVLKFDRERMRVSLGLKQLGEDPWENIARRYPTGTRIFGRVTNITDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+ W + + + GDEV V ++ +D E+ RI+L +KQ + +
Sbjct: 298 --DGV---EGLVHVSEMDWTNKNVNPGKAVAIGDEVEVMILDLDEERRRISLGMKQCQAN 352
Query: 134 P 134
P
Sbjct: 353 P 353
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 19/95 (20%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ +++S D ++D R +LN GD++ K + +D++ I+LSIK K
Sbjct: 474 IDGILRAADISRDRVEDARTVLNVGDKIEAKFMGVDKKTRAISLSIKA-----------K 522
Query: 142 VIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEE 176
+ ++ ++ D SS +++ S LGA+ +E
Sbjct: 523 DVQEEAEIMQDYSSSTATTS--------LGALLKE 549
>gi|169824523|ref|YP_001692134.1| fused penicillin tolerance LytB domain-containing protein/30S
ribosomal protein S1 [Finegoldia magna ATCC 29328]
gi|302380664|ref|ZP_07269129.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna ACS-171-V-Col3]
gi|167831328|dbj|BAG08244.1| fusion penicillin tolerance LytB domain and 30S ribosomal protein
S1 [Finegoldia magna ATCC 29328]
gi|302311607|gb|EFK93623.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Finegoldia
magna ACS-171-V-Col3]
Length = 675
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G + KV+ +E+ ++LV S E+ + +K + V + G+ D+GAF
Sbjct: 424 GETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWENITVGEKITGKVQRLTDFGAF 483
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL +H+S++SW+ I+ D+L GDE+ V+K +REK+RI+L +KQL
Sbjct: 484 IDLGGVDGL------LHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISLGLKQL 537
Query: 131 EEDPL 135
++ P
Sbjct: 538 QQKPF 542
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L +G+ GLVHVSE+S + + D LN GD V+VK+++I+ EK RI L
Sbjct: 564 DFGAFVKL--AEGI---EGLVHVSEISNEHVDKPSDELNIGDTVKVKILEINPEKKRIAL 618
Query: 126 SIKQLEEDP 134
S+K L P
Sbjct: 619 SMKALLPKP 627
>gi|260898312|ref|ZP_05906808.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
gi|308089134|gb|EFO38829.1| 30S ribosomal protein S1 [Vibrio parahaemolyticus Peru-466]
Length = 406
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 54 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 107
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 108 GLKQLGEDP 116
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 163 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 222
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 223 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 276
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + T+E G+
Sbjct: 277 ERISLGIKQMENDPFNAYVAD--NKKGTLVNATVTAVDAKGATVEIAEGV 324
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 88 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 147
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 148 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 201
Query: 133 DP 134
+P
Sbjct: 202 NP 203
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 326 GYIRASEVSRDRVEDASLILSAGDVVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASIN 385
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 386 KQDEAAFGNAMADA 399
>gi|87300975|ref|ZP_01083817.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
gi|87284846|gb|EAQ76798.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
Length = 361
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 209 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 266
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 267 ----GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 321
>gi|388257223|ref|ZP_10134403.1| 30S ribosomal protein S1 [Cellvibrio sp. BR]
gi|387939427|gb|EIK45978.1| 30S ribosomal protein S1 [Cellvibrio sp. BR]
Length = 559
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPGEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP ++ + K P+ V + ++++
Sbjct: 258 GLKQLGEDPWIQ-ITKRYPEGARVKAKVTNLT 288
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G I V V+ +EE +++ K W+ ++ D G+
Sbjct: 314 KNIHPSKVVQLGDEIEVMVLDIDEERRRISLGLKQCQENPWDAFARTCAKGDKISGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW + ++ +GDE+ V+ ID E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWHEAGEEAVRKYKKGDELETVVLAIDPERER 428
Query: 123 ITLSIKQLEEDPLLE 137
I+L IKQLE DP E
Sbjct: 429 ISLGIKQLETDPFSE 443
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GL+HVSE+ W ++I ++ GDE+ V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLIHVSEMDW-TNKNIHPSKVVQLGDEIEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ +E+P
Sbjct: 343 SLGLKQCQENP 353
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
++ SE+S + ++D R++L GDEV K+I +DR+ I+LS+K
Sbjct: 476 AVLKASELSREKVEDARNLLKVGDEVEAKIIAVDRKNRSISLSVK 520
>gi|318042629|ref|ZP_07974585.1| 30S ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 355
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 203 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 260
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP- 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 261 ----GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPEPG 316
Query: 135 -LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPL 167
+L +KV + + + M + EP+
Sbjct: 317 DMLTDPQKVFEKAEEMAARYKQMLLEQAEDNEPM 350
>gi|260880822|ref|ZP_05893177.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
gi|308093620|gb|EFO43315.1| ribosomal protein S1 [Vibrio parahaemolyticus AN-5034]
Length = 507
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + T+E G+
Sbjct: 427 ERISLGIKQMENDPFNAYVAD--NKKGTLVNATVTAVDAKGATVEIAEGV 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|209523929|ref|ZP_03272481.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|209495601|gb|EDZ95904.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
Length = 375
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|376006629|ref|ZP_09783861.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375324995|emb|CCE19614.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 375
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|113478043|ref|YP_724104.1| 30S ribosomal protein S1 [Trichodesmium erythraeum IMS101]
gi|110169091|gb|ABG53631.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 390
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 11/114 (9%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 164 LPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDI------G 217
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I+ +L DE++V +I +D ++ RI+LS KQLE +P
Sbjct: 218 GVSGLLHISEISHDHIETPSSVLKVNDELKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|356558105|ref|XP_003547348.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 399
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 21/160 (13%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 79
+I K ++ +EE +LV S + AV + ++ + + G + YGAFI +
Sbjct: 216 VIPFKFVEVDEEQSRLVLSHRKAV-AESQGQLGIGSVVTGSVQSIKPYGAFIDI------ 268
Query: 80 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP----- 134
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 269 GGISGLLHVSQISHDRITDIETVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 328
Query: 135 ----LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 329 NPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 368
>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
Length = 410
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G + K+I+ +L+ S K+ V ++ +++ D+ G+ ++G
Sbjct: 157 FKGQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFG 216
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL VHVSE+S+D + D+L G EV+VKV+ +D E+ RI+LSIK
Sbjct: 217 AFIDLGGVDGL------VHVSEISYDHVDKPSDVLEAGQEVKVKVLNVDPERERISLSIK 270
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
Q P + EK +GSV++ + +S +E PG+
Sbjct: 271 QTLPGPWDDIEEKA--PEGSVLTGTVKRLTSFGAFVEVFPGV 310
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E +++ S K + W+ + + G +GAF+ +
Sbjct: 247 AGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPEGSVLTGTVKRLTSFGAFVEV 306
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I D+L G EV+VKV+ +D E R+ LS+K LEE
Sbjct: 307 -FPG----VEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMKALEER 361
Query: 134 P 134
P
Sbjct: 362 P 362
>gi|423063754|ref|ZP_17052544.1| RNA binding S1 domain protein [Arthrospira platensis C1]
gi|406714603|gb|EKD09764.1| RNA binding S1 domain protein [Arthrospira platensis C1]
Length = 384
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|294102013|ref|YP_003553871.1| RNA binding S1 domain-containing protein [Aminobacterium
colombiense DSM 12261]
gi|293616993|gb|ADE57147.1| RNA binding S1 domain protein [Aminobacterium colombiense DSM
12261]
Length = 503
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 30/167 (17%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYG 68
G + VK+++ + ++LV S + V NK+ + V+ DI GR +G
Sbjct: 166 FVGEVFDVKLLEKDRRKRRLVLSRRMLVEEAVEEQRNKFYTTVSEGDILEGRVSSITSFG 225
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI+L DGL VH+SE+SW ++++ +G+ V+VKVI I++E +R++LSIK
Sbjct: 226 AFINLGPIDGL------VHISELSWKRNVKPKEVVKKGETVKVKVIGIEQENNRVSLSIK 279
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
Q + DP S++ ++ + S + + GA E
Sbjct: 280 QTQPDPW------------SIVEENWKIGDKASGVVTNVTDFGAFVE 314
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI +E ++ S K W+ + D G D+GAF+ +
Sbjct: 257 GETVKVKVIGIEQENNRVSLSIKQTQPDPWSIVEENWKIGDKASGVVTNVTDFGAFVEV- 315
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
P + GL+H+ ++SW I+ RD+L +G V V V+ +D EK R++L KQL DP
Sbjct: 316 GPG----IEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAEKKRMSLGYKQL-NDP 370
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + + GL+H+S++S + D+L+EG+EV +VI+I+ + R+ L
Sbjct: 393 DFGAFVEVE-----EGVEGLIHISQLSTKRVDKPEDVLSEGEEVLARVIEINPAERRMRL 447
Query: 126 SIKQLEEDPLLETLEK 141
SI L E+ + + E+
Sbjct: 448 SISALFEEEIRKNREE 463
>gi|116075859|ref|ZP_01473118.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
gi|116067174|gb|EAU72929.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
Length = 359
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 207 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 265
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 266 -----GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 319
>gi|410584446|ref|ZP_11321549.1| ribosomal protein S1 [Thermaerobacter subterraneus DSM 13965]
gi|410504381|gb|EKP93892.1| ribosomal protein S1 [Thermaerobacter subterraneus DSM 13965]
Length = 558
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL +HVSE+ W I RD+L EGD ++VKV+K+DRE+ RI+L
Sbjct: 358 DFGAFIDLGGVDGL------LHVSEMHWGRIDHPRDLLKEGDTIQVKVLKVDRERGRISL 411
Query: 126 SIKQLEEDP 134
S+K+L DP
Sbjct: 412 SLKELMPDP 420
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ S K+ + W+ R V G +GAF+ L
Sbjct: 392 GDTIQVKVLKVDRERGRISLSLKELMPDPWSDVERRYPVGATVKGTVVRLVPFGAFVRLE 451
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P + GLVH+S+++ ++ ++++EG EV V+V+++ E+ RI+LS++ E
Sbjct: 452 -PG----VEGLVHISQLADHRVESPDEVVHEGQEVEVRVLRVQPEERRISLSMRSPAE 504
>gi|149377379|ref|ZP_01895123.1| ribosomal protein S1 [Marinobacter algicola DG893]
gi|149358303|gb|EDM46781.1| ribosomal protein S1 [Marinobacter algicola DG893]
Length = 564
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 18/164 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K V W +SS+ N D G+
Sbjct: 313 NKNIHPSKVVQVGDEVGVMILDIDEERRRISLGIKQCVANPWEDFSSKFNKGDRISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDEV ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-YKKGDEVETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQLE DP E ++ + GS++ + S + + TI
Sbjct: 427 ERISLGIKQLESDPFAEFVQ--LNDKGSIVKGTVSAVDAKAATI 468
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP ++
Sbjct: 258 GLKQLGEDPWVD 269
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ ++ SE+S D ++D R+ LNEGDEV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNALNEGDEVEAKIISIDRKNRVINLSVKSKDVEDDKQALE 532
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPL 167
V + ++ SSS + TI L
Sbjct: 533 GVRAK--------AAESSSGATTIGDL 551
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCVANP 353
>gi|452990290|emb|CCQ98504.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Clostridium ultunense Esp]
Length = 440
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G + VKVI+ + E +++ S + + + +R+ + GR D+GAF
Sbjct: 200 GKPLKVKVIELDRENNRVILSHRAVLEEEAERRKKEVLNRLEAGQVVEGRVERITDFGAF 259
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL +H+SE+SWD ++ D ++ GD V+VKV+K+DRE RI+LS+K
Sbjct: 260 VDLGGVDGL------IHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSLKAT 313
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P + + + P G V+ S +E +PG+
Sbjct: 314 QPSPWEKAAQSIKP--GDVVKGIVRRLPSFGAFVELMPGV 351
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHL 73
G I+ VKV++ + E +++ S K + W K + + D+ G +GAF+ L
Sbjct: 288 VGDIVKVKVLKVDRENERISLSLKATQPSPWEKAAQSIKPGDVVKGIVRRLPSFGAFVEL 347
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ + GLVHVS++S + ++L EG EV VKV+ + E RI+LS+K+LEE
Sbjct: 348 -----MPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFNLEDKRISLSMKELEEA 402
Query: 134 PLLETLE 140
P+ E+ E
Sbjct: 403 PVPESKE 409
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK----DAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDG 78
G I VKV + N E +LV S++ + W S R G + I G
Sbjct: 117 GDEIEVKVKKFNPEKDELVVSKRAVAAEKAWEVLSQRFEN-----GETFETTIVDVVKGG 171
Query: 79 LYH---LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
L L G + S+V + ++D D +G ++VKVI++DRE +R+ LS
Sbjct: 172 LVADVGLRGFIPASQVERNYVEDFSDY--KGKPLKVKVIELDRENNRVILS 220
>gi|428772044|ref|YP_007163832.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428686323|gb|AFZ46183.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 352
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + + + V + VG + YGAFI +
Sbjct: 160 LLGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIG- 218
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 219 -----GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEP 272
>gi|331005955|ref|ZP_08329301.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
gi|330420250|gb|EGG94570.1| SSU ribosomal protein S1p [gamma proteobacterium IMCC1989]
Length = 560
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ V+V+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVRVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP +E
Sbjct: 258 GLKQLGEDPWVE 269
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 26/160 (16%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V++ +E +++ K W+ + SR D G+ D+G F+ L
Sbjct: 325 GDEVEVMVLEIDEGRRRISLGIKQCQENPWDAFGSRFQKGDKISGKIKSITDFGIFLGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW D ++ +GD++ ++ +D E+ RI+L IKQLEED
Sbjct: 384 --DG--GIDGLVHLSDISWTDTGEEAVRNYKKGDDLETVILAVDPERERISLGIKQLEED 439
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAI 173
S ++S++ S + T++ + GA+
Sbjct: 440 SF------------SAYAESNAKGSIVNGTVKEVDAKGAV 467
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F + + GLVHVSE+ W ++I +++ GDEV V V++ID + RI
Sbjct: 289 DYGCFAEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVDLGDEVEVMVLEIDEGRRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +E+P
Sbjct: 343 SLGIKQCQENP 353
>gi|91229576|ref|ZP_01262936.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
gi|91187384|gb|EAS73741.1| 30S ribosomal protein S1 [Vibrio alginolyticus 12G01]
Length = 389
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|427711825|ref|YP_007060449.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 6312]
gi|427375954|gb|AFY59906.1| ribosomal protein S1 [Synechococcus sp. PCC 6312]
Length = 339
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + +++ V ++ +G + YGAFI +
Sbjct: 158 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVIGTVRGIKPYGAFIDIG- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N D+++V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GVSGLLHISEISHDHIDTPHSVFNVNDQLKVMIIDLDAERGRISLSTKQLEPEP 270
>gi|59712366|ref|YP_205142.1| 30S ribosomal protein S1 [Vibrio fischeri ES114]
gi|197334803|ref|YP_002156581.1| 30S ribosomal protein S1 [Vibrio fischeri MJ11]
gi|423686535|ref|ZP_17661343.1| 30S ribosomal protein S1 [Vibrio fischeri SR5]
gi|59480467|gb|AAW86254.1| 30S ribosomal subunit protein S1 [Vibrio fischeri ES114]
gi|197316293|gb|ACH65740.1| ribosomal protein S1 [Vibrio fischeri MJ11]
gi|371494603|gb|EHN70201.1| 30S ribosomal protein S1 [Vibrio fischeri SR5]
Length = 557
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQTFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNATGEDAVREYKKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L +KQ+EEDP L + G++++ + S + TI
Sbjct: 428 RISLGVKQMEEDPFNNYLAD--NKKGTLVNGTVSAVDAKGATI 468
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE+S D ++D IL+ GD V K +DR+ + LSIK +E
Sbjct: 476 GYIRTSELSRDRVEDASLILSVGDSVEAKFTGVDRKNRVVNLSIKAKDE 524
>gi|297813179|ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
gi|297320310|gb|EFH50732.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
Length = 416
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 21/159 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 232 IPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDIG------ 284
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 285 GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRN 344
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 345 PKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 383
>gi|424845505|ref|ZP_18270116.1| ribosomal protein S1 [Jonquetella anthropi DSM 22815]
gi|363986943|gb|EHM13773.1| ribosomal protein S1 [Jonquetella anthropi DSM 22815]
Length = 550
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 18/121 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
V +++ ++ ++LV S + +A ++ V V D+ G +GAF+++
Sbjct: 208 FEVCLLEKDKRKRRLVLSRRVLLDKDLNARREEFYQNVKVGDVVDGTVSSLTSFGAFVNV 267
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+SE+SW I+D+L +GDEV+VKVI IDRE ++I+LS++Q++ D
Sbjct: 268 ------GPIDGLVHLSEISWQRSAKIKDLLKKGDEVKVKVIGIDRENNKISLSMRQVQGD 321
Query: 134 P 134
P
Sbjct: 322 P 322
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-------DAVWNKYS-SRVNVEDIFVGRDYGAFIHLR 74
G + VKVI + E K+ S + D V +++ + + D+GAF+ +
Sbjct: 294 GDEVKVKVIGIDRENNKISLSMRQVQGDPWDTVTERWTKGQTTTGVVTNVTDFGAFVEVE 353
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+ ++SW I+ RD++ +G E+ V V+ ++ ++ R++L KQL DP
Sbjct: 354 -----PGIEGLVHIGDLSWARIKHPRDVIRKGQEIEVVVLDVEADRRRMSLGYKQL-NDP 407
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 31 IQANEEMKKLVFSEKDAVWNKYSSR-VNVEDIFVG----RDYGAFIHLRFPDGLYHLTGL 85
++A+ L + + + WN +R +D+ V D+GAF+ L + GL
Sbjct: 390 VEADRRRMSLGYKQLNDPWNGIENRYAKGQDVQVKVVRLADFGAFVELE-----EGVEGL 444
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+H+S++S + +D+L EG EV ++++++ + RI LS++ LE
Sbjct: 445 IHISQLSSKRVDKPKDVLTEGQEVTARILEVNPTERRIRLSLRALE 490
>gi|90581253|ref|ZP_01237051.1| 30S ribosomal protein S1 [Photobacterium angustum S14]
gi|90437624|gb|EAS62817.1| 30S ribosomal protein S1 [Vibrio angustum S14]
Length = 556
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVSGEDAVRD-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+EEDP + + G++++ + + T+E G+
Sbjct: 427 ERISLGVKQIEEDPFNSFVAD--TKKGALVTGKVTAVDAKGATVELGEGI 474
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|269926456|ref|YP_003323079.1| RNA binding S1 domain-containing protein [Thermobaculum terrenum
ATCC BAA-798]
gi|269790116|gb|ACZ42257.1| RNA binding S1 domain protein [Thermobaculum terrenum ATCC BAA-798]
Length = 431
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNK--YSSRVNVEDIFVGR----------DYG 68
L G + KVI+ N + +L+ SE+ A + S +E++ G+ D+G
Sbjct: 215 LVGRTLQAKVIEVNRKRNRLILSERIATQERKETSKERLIEELREGQIVKGRVTSLADFG 274
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ + DGL HL SE+SW I ++L GDEV V V+ IDRE +I LS+K
Sbjct: 275 AFVDIGGADGLIHL------SEISWGRINHPSEVLKPGDEVDVMVLNIDREHKKIALSMK 328
Query: 129 QLEEDPLLETLEK 141
+ + +P +E+
Sbjct: 329 RTQPEPWATAMER 341
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 20/118 (16%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ + E KK+ S K W R +V I G +G F+ R
Sbjct: 306 GDEVDVMVLNIDREHKKIALSMKRTQPEPWATAMERYDVGQIVEGEVTQIAPFGVFV--R 363
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVH+SE+ +Q GD++R++VIK+D ++ RI LS++QL+E
Sbjct: 364 LEDGI---EGLVHMSELGDTKVQ-------VGDKLRLRVIKMDTQRRRIGLSVRQLDE 411
>gi|212218847|ref|YP_002305634.1| 30S ribosomal protein S1 [Coxiella burnetii CbuK_Q154]
gi|212013109|gb|ACJ20489.1| SSU ribosomal protein S1P [Coxiella burnetii CbuK_Q154]
Length = 555
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL +DP + +E+ P + V ++++
Sbjct: 258 GMKQLADDPWAK-IERRYPVNSRVFGKVTNIT 288
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 314 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 374 ITDFGMFIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERE 427
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 428 RISLGIKQLEGDPFMEFVE 446
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 238 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 298 -----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 351
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 352 NPWQEFAEK 360
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 473 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 523
>gi|441502294|ref|ZP_20984305.1| SSU ribosomal protein S1p [Photobacterium sp. AK15]
gi|441430041|gb|ELR67492.1| SSU ribosomal protein S1p [Photobacterium sp. AK15]
Length = 556
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDRVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+EEDP + + + G++++ + + + TIE G+
Sbjct: 427 ERISLGIKQIEEDPFNGYVS--VNKKGALVTGTVTAVDAKGATIELAEGV 474
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|30249909|ref|NP_841979.1| 30S ribosomal protein S1 [Nitrosomonas europaea ATCC 19718]
gi|30180946|emb|CAD85873.1| Ribosomal protein S1:S1 RNA binding domain [Nitrosomonas europaea
ATCC 19718]
Length = 572
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ +++N GDEV KV+K D+EK+R++L
Sbjct: 213 DYGAFVDLGGIDGLLHITDL------AWRRVKHPTEVINVGDEVTAKVLKFDQEKNRVSL 266
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ + ++M+
Sbjct: 267 GLKQLTEDPWI-GLSRRYPQGTRIFGKVTNMT 297
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V +++ +E+ +++ K W ++S D G+ D+G FI L
Sbjct: 334 GDEVEVMILEIDEDRRRISLGMKQCRPNPWEEFSLSHEKGDKVTGQIKSITDFGLFIGL- 392
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNE---GDEVRVKVIKIDREKSRITLSIKQLE 131
P ++ GLVH+S++SW+ Q ++E GDEV V+ ID EK RI+L IKQLE
Sbjct: 393 -PG---NIDGLVHLSDLSWN--QPGEKAISEFKKGDEVEAVVLSIDVEKERISLGIKQLE 446
Query: 132 EDPL 135
DP
Sbjct: 447 GDPF 450
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SE S D I+DIR +NEGDE+ +I IDR+ I+LS+K Q EED +++L
Sbjct: 485 GYLRASEFSRDKIEDIRSRVNEGDEIEAMIINIDRKNRSISLSVKARIQDEEDKAVKSLA 544
Query: 141 KV 142
V
Sbjct: 545 SV 546
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++ KV++ ++E ++ K W S R G+ DYGAF+ +
Sbjct: 247 GDEVTAKVLKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQGTRIFGKVTNMTDYGAFVEIE 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ I+ GDEV V +++ID ++ RI+L +KQ
Sbjct: 307 -----QGIEGLVHVSEMDW-TNKNVYPSKIVQLGDEVEVMILEIDEDRRRISLGMKQCRP 360
Query: 133 DP 134
+P
Sbjct: 361 NP 362
>gi|30692346|ref|NP_850903.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana]
gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana]
gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]
gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana]
gi|332006494|gb|AED93877.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
Length = 416
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 21/159 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 232 IPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDIG------ 284
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 285 GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRN 344
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 345 PKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 383
>gi|54309615|ref|YP_130635.1| 30S ribosomal protein S1 [Photobacterium profundum SS9]
gi|46914053|emb|CAG20833.1| putative ribosomal protein S1 [Photobacterium profundum SS9]
Length = 556
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDRVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVTGEDAVRD-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQ+EEDP
Sbjct: 427 ERISLGIKQIEEDPF 441
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|71892158|ref|YP_277890.1| 30S ribosomal protein S1 [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|71796264|gb|AAZ41015.1| 30S ribosomal subunit protein S1 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 564
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G KVI+ + + +V S E+D + N+ + + + DYG
Sbjct: 147 LEGQAFEFKVIKLDHKRNNVVVSRRAVIESENSVERDQLLNQLHEGIEIRGVVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL H+T +++W ++ DI+N GDE+ VKV++ DRE+ R++L +K
Sbjct: 207 AFIDLGGVDGLLHIT------DMAWKRVKHPSDIVNVGDEIIVKVLRFDRERIRVSLGLK 260
Query: 129 QLEEDPLLETLEK 141
QL EDP +++
Sbjct: 261 QLGEDPWAAIVQR 273
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
K+IH G + V V+ ++E +++ K W K+S N D +GR
Sbjct: 312 TNKNIHPSKVVAVGESVEVMVLDIDKERRRISLGLKQCKINPWQKFSDMYNRGDRVMGRI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW L ++ + +GDE+ V+++D E+
Sbjct: 372 KSITDFGIFIGLEGG-----IDGLVHLSDISWYLSNEEAVNKYKKGDEIIAVVLQVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQL EDPL
Sbjct: 427 ERISLGIKQLTEDPL 441
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG FI + DG+ GLVHVSE+ W ++I ++ G+ V V V+ ID+E+ RI
Sbjct: 289 DYGCFIEIE--DGV---EGLVHVSEMDWTN-KNIHPSKVVAVGESVEVMVLDIDKERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKINP 353
>gi|209364104|ref|YP_001424879.2| 30S ribosomal protein S1 [Coxiella burnetii Dugway 5J108-111]
gi|215918988|ref|NP_819560.2| 30S ribosomal protein S1 [Coxiella burnetii RSA 493]
gi|206583873|gb|AAO90074.2| SSU ribosomal protein S1P [Coxiella burnetii RSA 493]
gi|207082037|gb|ABS77449.2| SSU ribosomal protein S1P [Coxiella burnetii Dugway 5J108-111]
Length = 555
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL +DP + +E+ P + V ++++
Sbjct: 258 GMKQLADDPWAK-IERRYPVNSRVFGKVTNIT 288
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 314 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 374 ITDFGMFIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERE 427
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 428 RISLGIKQLEGDPFMEFVE 446
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 238 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 298 -----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 351
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 352 NPWQEFAEK 360
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 473 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 523
>gi|87124899|ref|ZP_01080746.1| RNA binding S1 [Synechococcus sp. RS9917]
gi|86167219|gb|EAQ68479.1| RNA binding S1 [Synechococcus sp. RS9917]
Length = 369
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 217 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 275
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 276 -----GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 329
>gi|209695657|ref|YP_002263586.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
gi|208009609|emb|CAQ79905.1| 30S ribosomal protein S1 [Aliivibrio salmonicida LFI1238]
Length = 557
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQTFAEAQAKGDHVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNATGEDAVREYKKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L +KQ+EEDP L + G++++ + S + TI
Sbjct: 428 RISLGVKQMEEDPFNNYLAD--NKKGTLVNGTVSAVDAKGATI 468
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SE+S D I+D IL+ GD V K +DR+ + LSIK + +E + TL
Sbjct: 476 GYIRTSELSRDRIEDASLILSVGDSVEAKFTGVDRKNRVVNLSIKAKDEADEQEAMATL- 534
Query: 141 KVIPQDGS 148
P+DG
Sbjct: 535 NTKPEDGG 542
>gi|429214745|ref|ZP_19205908.1| 30S ribosomal protein S1 [Pseudomonas sp. M1]
gi|428155031|gb|EKX01581.1| 30S ribosomal protein S1 [Pseudomonas sp. M1]
Length = 560
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ VI+ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVIARVTNLT 288
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V+V+ +EE +++ K W +S R N D G
Sbjct: 314 KNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSGRFNKGDKISGTIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L + GLVH+S++SW+ ++ +GDE+ ++ +D E+ R
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNEAGEEAVRRFKKGDELETVILSVDPERER 428
Query: 123 ITLSIKQLEEDPL 135
I+L IKQLE+DP
Sbjct: 429 ISLGIKQLEDDPF 441
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LSIK
Sbjct: 473 EIEGVLKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSIK 520
>gi|409990465|ref|ZP_11273835.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
gi|409938680|gb|EKN79974.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
Length = 320
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|1004353|gb|AAA77669.1| ribosomal protein S1 homolog, partial [Homo sapiens]
Length = 406
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 16/148 (10%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHL 82
I+S K + A E +L V++K S VE V R D+GAF+ L DGL
Sbjct: 183 ILSRKAVAAQERAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL--- 233
Query: 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +++
Sbjct: 234 ---VHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQI 290
Query: 143 IPQDGSVISDSSSMSSSNSNTIEPLPGL 170
GSV+ + +E LPG+
Sbjct: 291 AA--GSVLEGTVKRVKDFGAFVEILPGI 316
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 254 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI- 312
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 313 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 368
>gi|326692495|ref|ZP_08229500.1| 40S ribosomal protein S1 [Leuconostoc argentinum KCTC 3773]
gi|1085376|pir||JC4026 ribosomal protein S1-like DNA-binding protein - human
Length = 396
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 16/148 (10%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHL 82
I+S K + A E +L V++K S VE V R D+GAF+ L DGL
Sbjct: 173 ILSRKAVAAQERAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL--- 223
Query: 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +++
Sbjct: 224 ---VHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQI 280
Query: 143 IPQDGSVISDSSSMSSSNSNTIEPLPGL 170
GSV+ + +E LPG+
Sbjct: 281 AA--GSVLEGTVKRVKDFGAFVEILPGI 306
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 244 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 303 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 358
>gi|212212974|ref|YP_002303910.1| 30S ribosomal protein S1 [Coxiella burnetii CbuG_Q212]
gi|212011384|gb|ACJ18765.1| SSU ribosomal protein S1P [Coxiella burnetii CbuG_Q212]
Length = 555
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL +DP + +E+ P + V ++++
Sbjct: 258 GMKQLADDPWAK-IERRYPVNSRVFGKVTNIT 288
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 314 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 374 ITDFGMFIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERE 427
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 428 RISLGIKQLEGDPFMEFVE 446
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 238 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 298 -----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 351
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 352 NPWQEFAEK 360
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 473 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 523
>gi|1098565|gb|AAA97575.1| ribosomal S1 protein, partial [Homo sapiens]
Length = 352
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 16/148 (10%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHL 82
I+S K + A E +L V++K S VE V R D+GAF+ L DGL
Sbjct: 129 ILSRKAVAAQERAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL--- 179
Query: 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+LSIK + P E +++
Sbjct: 180 ---VHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQI 236
Query: 143 IPQDGSVISDSSSMSSSNSNTIEPLPGL 170
GSV+ + +E LPG+
Sbjct: 237 AA--GSVLEGTVKRVKDFGAFVEILPGI 262
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 200 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI- 258
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 259 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 314
>gi|161831346|ref|YP_001596460.1| 30S ribosomal protein S1 [Coxiella burnetii RSA 331]
gi|81629367|sp|Q83E09.1|RS1_COXBU RecName: Full=30S ribosomal protein S1
gi|161763213|gb|ABX78855.1| ribosomal protein S1 [Coxiella burnetii RSA 331]
Length = 551
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 200 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 253
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL +DP + +E+ P + V ++++
Sbjct: 254 GMKQLADDPWAK-IERRYPVNSRVFGKVTNIT 284
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 310 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 369
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 370 ITDFGMFIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERE 423
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 424 RISLGIKQLEGDPFMEFVE 442
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 234 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 293
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 294 -----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 347
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 348 NPWQEFAEK 356
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 469 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>gi|134302709|ref|YP_001122677.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752625|ref|ZP_16189645.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
AS_713]
gi|421754490|ref|ZP_16191461.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
831]
gi|421758219|ref|ZP_16195075.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700103]
gi|421760044|ref|ZP_16196867.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70102010]
gi|424675368|ref|ZP_18112275.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70001275]
gi|134050486|gb|ABO47557.1| Ribosomal protein S1 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409084514|gb|EKM84687.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
831]
gi|409084662|gb|EKM84831.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
AS_713]
gi|409089635|gb|EKM89670.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70102010]
gi|409090074|gb|EKM90098.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700103]
gi|417434123|gb|EKT89095.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
70001275]
Length = 556
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEINVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
ITLSIK ++ED
Sbjct: 515 SITLSIKAVDED 526
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEINVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWSEFEKNYKPGD 365
>gi|153207789|ref|ZP_01946389.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
gi|165924110|ref|ZP_02219942.1| ribosomal protein S1 [Coxiella burnetii Q321]
gi|120576341|gb|EAX32965.1| ribosomal protein S1 [Coxiella burnetii 'MSU Goat Q177']
gi|165916449|gb|EDR35053.1| ribosomal protein S1 [Coxiella burnetii Q321]
Length = 551
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 200 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 253
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL +DP + +E+ P + V ++++
Sbjct: 254 GMKQLADDPWAK-IERRYPVNSRVFGKVTNIT 284
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 310 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 369
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 370 ITDFGMFIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERE 423
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 424 RISLGIKQLEGDPFMEFVE 442
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 234 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 293
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 294 -----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 347
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 348 NPWQEFAEK 356
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 469 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>gi|443315844|ref|ZP_21045315.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442784569|gb|ELR94438.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 330
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ + + + V ++ +G + YGAFI +
Sbjct: 161 LVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLQVGEVVLGNVRGLKPYGAFIDI-- 218
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS KQLE +P
Sbjct: 219 ----GGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQLEPEP 273
>gi|148241514|ref|YP_001226671.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147849824|emb|CAK27318.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 367
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 216 LVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFIDIG- 274
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 275 -----GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 328
>gi|440509953|ref|YP_007347389.1| 30S ribosomal protein S1 [Candidatus Blochmannia chromaiodes str.
640]
gi|440454166|gb|AGC03658.1| 30S ribosomal protein S1 [Candidatus Blochmannia chromaiodes str.
640]
Length = 564
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G KVI+ + + +V S E+D + N+ + + + DYG
Sbjct: 147 LEGQAFEFKVIKLDHKRNNVVVSRRAVIESENSVERDQLLNQLHEGIEIRGVVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL H+T +++W ++ DI+N GDE+ VKV++ DRE+ R++L +K
Sbjct: 207 AFIDLGGVDGLLHIT------DMAWKRVKHPSDIVNVGDEIIVKVLRFDRERIRVSLGLK 260
Query: 129 QLEEDPLLETLEK 141
QL EDP +++
Sbjct: 261 QLGEDPWAAIVQR 273
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
K+IH G + V V+ ++E +++ K W K+S N D +GR
Sbjct: 312 TNKNIHPSKVVTVGESVEVMVLDIDKERRRISLGLKQCKINPWQKFSDMYNRGDRVMGRI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW L ++ + +GDE+ V+++D E+
Sbjct: 372 KSITDFGIFIGLEGG-----IDGLVHLSDISWYLSNEEAVNKYKKGDEIIAVVLQVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQL EDPL
Sbjct: 427 ERISLGIKQLTEDPL 441
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG FI + DG+ GLVHVSE+ W ++I ++ G+ V V V+ ID+E+ RI
Sbjct: 289 DYGCFIEIE--DGV---EGLVHVSEMDWTN-KNIHPSKVVTVGESVEVMVLDIDKERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKINP 353
>gi|392989866|ref|YP_006488459.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
gi|392337286|gb|AFM71568.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
Length = 410
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 13/123 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ N E +++ S KD + W + V + G+ +GAF+ +
Sbjct: 251 GDEVKVKVLSINPEQERVSLSIKDTLPGPWTDIEEKATVGSVLDGKVKRLTSFGAFVEV- 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I ++L+EGDEV+VKV+++ E+ RI LSIK LEE P
Sbjct: 310 FPG----VEGLVHISQISHKHIATPHEVLHEGDEVQVKVLEVHPEEHRIALSIKALEEKP 365
Query: 135 LLE 137
E
Sbjct: 366 ASE 368
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G ++ K+++ +L+ S K V + + ++ D+ GR D+GAF
Sbjct: 162 GETLAFKIVEIEPSENRLILSHKAVVETEKEEKKKEILANIHEGDVIDGRVARITDFGAF 221
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D L GDEV+VKV+ I+ E+ R++LSIK
Sbjct: 222 VDLGGIDGL------VHVSEISHSHVAKPSDALAVGDEVKVKVLSINPEQERVSLSIKDT 275
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P + EK GSV+ +S +E PG+
Sbjct: 276 LPGPWTDIEEKATV--GSVLDGKVKRLTSFGAFVEVFPGV 313
>gi|120553955|ref|YP_958306.1| 30S ribosomal protein S1 [Marinobacter aquaeolei VT8]
gi|387814664|ref|YP_005430151.1| 30S ribosomal protein S1 [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|120323804|gb|ABM18119.1| SSU ribosomal protein S1P [Marinobacter aquaeolei VT8]
gi|381339681|emb|CCG95728.1| 30S ribosomal subunit protein S1 [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 563
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP ++
Sbjct: 258 GLKQLGEDPWVD 269
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 18/164 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K V W +SS N D G+
Sbjct: 313 NKNIHPSKVVQVGDEVEVMILDIDEERRRISLGIKQCVANPWEDFSSNFNKGDRISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDEV ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-YKKGDEVETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQLE DP E ++ + GS++ + S + TI
Sbjct: 427 ERISLGIKQLESDPFAEFVQ--LNDKGSIVKGTVSAVDAKGATI 468
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMILDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCVANP 353
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ ++ SE+S D ++D R++L EG+EV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNVLKEGEEVEAKIISIDRKNRVINLSVKSKDVEDDKQALE 532
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPL 167
V S + SS + TI L
Sbjct: 533 NV---------RSKAAESSGATTIGDL 550
>gi|410085396|ref|ZP_11282115.1| SSU ribosomal protein S1p [Morganella morganii SC01]
gi|421492373|ref|ZP_15939734.1| RPSA [Morganella morganii subsp. morganii KT]
gi|455738686|ref|YP_007504952.1| SSU ribosomal protein S1p [Morganella morganii subsp. morganii KT]
gi|400193529|gb|EJO26664.1| RPSA [Morganella morganii subsp. morganii KT]
gi|409768105|gb|EKN52169.1| SSU ribosomal protein S1p [Morganella morganii SC01]
gi|455420249|gb|AGG30579.1| SSU ribosomal protein S1p [Morganella morganii subsp. morganii KT]
Length = 557
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + + K P++ + ++++
Sbjct: 258 GLKQLGEDPWV-AIAKRYPENTRLTGRVTNLT 288
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYT 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E + G+
Sbjct: 446 --AVTKKGAIVTGKVTAVDAKGATVELMDGV 474
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y++ I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYTAVTKKGAIVTGKVTAVDAKGATVELM 471
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +L+ GDEV K +DR+ I LS++ +E
Sbjct: 472 --DGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKYTGVDRKNRVINLSVRAKDEAD 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + S+++
Sbjct: 527 EKDAIATVNKQEEAGFSNNA 546
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPENTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|432826402|ref|ZP_20060057.1| 30S ribosomal protein S1 [Escherichia coli KTE123]
gi|431374186|gb|ELG59781.1| 30S ribosomal protein S1 [Escherichia coli KTE123]
Length = 557
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLSEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLSEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|378579117|ref|ZP_09827786.1| 30S ribosomal subunit protein S1 [Pantoea stewartii subsp.
stewartii DC283]
gi|377818161|gb|EHU01248.1| 30S ribosomal subunit protein S1 [Pantoea stewartii subsp.
stewartii DC283]
Length = 557
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --TLNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASMDRIEDATLVLNVGDDVEAKFTGVDRKNRLVSLSV 519
Query: 128 K 128
+
Sbjct: 520 R 520
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|116492841|ref|YP_804576.1| 30S ribosomal protein S1 [Pediococcus pentosaceus ATCC 25745]
gi|421894040|ref|ZP_16324532.1| 30S ribosomal protein S1 homolog [Pediococcus pentosaceus IE-3]
gi|116102991|gb|ABJ68134.1| SSU ribosomal protein S1P [Pediococcus pentosaceus ATCC 25745]
gi|385273201|emb|CCG89904.1| 30S ribosomal protein S1 homolog [Pediococcus pentosaceus IE-3]
Length = 402
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G + VK+I+ E +L+ S E++A + + + D+ G+ ++GAF
Sbjct: 160 GQTLKVKIIEVKPEDNRLILSHKAVLNAEREAKRGEVLASIKEGDVVTGKVARLTNFGAF 219
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VH+SE+S+ + D+L G+EV+VKV+ +D EK R++LSIKQ
Sbjct: 220 VDLGGIDGL------VHISEISYQRVDKPSDVLKAGEEVQVKVLSVDAEKERVSLSIKQT 273
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P + +E+ P+ G+V+ + +E PG+
Sbjct: 274 QPGP-WDNIEENAPE-GAVLDGKVKRLTDFGAFVEVFPGV 311
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E +++ S K W+ + G+ D+GAF+ +
Sbjct: 248 AGEEVQVKVLSVDAEKERVSLSIKQTQPGPWDNIEENAPEGAVLDGKVKRLTDFGAFVEV 307
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I D+L EG +++VKV+++ + R+ LSIK LEE
Sbjct: 308 -FP----GVEGLVHISQISHKHIATPADVLKEGQDIKVKVLEVHPAEHRLALSIKALEEA 362
Query: 134 P 134
P
Sbjct: 363 P 363
>gi|308049649|ref|YP_003913215.1| 30S ribosomal protein S1 [Ferrimonas balearica DSM 9799]
gi|307631839|gb|ADN76141.1| SSU ribosomal protein S1P [Ferrimonas balearica DSM 9799]
Length = 556
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVNLGDSVEVMVLDIDEERRRISLGLKQCKANPWEEFARNFNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ +D +G+E+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNATGEDAVREYKKGEEISAVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L +KQ+EEDP + L + G++++ + + + T+E
Sbjct: 428 RISLGVKQIEEDPFNKYLSD--NKKGAIVTGTITAVDAKGATVE 469
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W ++R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVSIANRYPEGAKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDSVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
++ G + V+++S D I+D +L+ G+ V K + +DR+ I+LSIK +E E ++
Sbjct: 473 NIEGYIRVADISRDRIEDASTVLSVGESVEAKFMGVDRKNRNISLSIKAKDEAEEKEAID 532
Query: 141 KVIPQDGSVISDSSSMSSS 159
+ QD +V SS+M+ +
Sbjct: 533 ALNQQDETVF--SSAMAEA 549
>gi|334136644|ref|ZP_08510104.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
gi|333605843|gb|EGL17197.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
Length = 418
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 30/165 (18%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G + ++V + + E K++ S+KD + +Y S++ V ++ G +GAF
Sbjct: 160 GRTLRLRVKEIDREKNKVILSQKDVLDEEYEAQKKDIISKIEVGKVYEGTVQRLTQFGAF 219
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE++W ++ +I+ EGD+V V+V+K+D EK +++LS+K
Sbjct: 220 VDIGGIDGL------VHISEMAWHHVEHPSEIVKEGDKVSVQVLKVDPEKDKVSLSLKAT 273
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+E P E EK G +I + T++ L G GA E
Sbjct: 274 QEGP-WEKAEKTFT-TGEII----------TGTVKRLAGFGAFVE 306
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 5 HSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDI 61
H + P + + E G +SV+V++ + E K+ S K + W K +I
Sbjct: 237 HHVEHPSEIVKE------GDKVSVQVLKVDPEKDKVSLSLKATQEGPWEKAEKTFTTGEI 290
Query: 62 FVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
G +GAF+ + P + GLVH+S+++ I +++L EG EV+VKV+ +
Sbjct: 291 ITGTVKRLAGFGAFVEI-APG----VEGLVHISQIAHRHIATPQEVLKEGQEVKVKVLDV 345
Query: 117 DREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
+ + R++LSIK+ EE P S S+ SS +SN + L G
Sbjct: 346 NAAEKRVSLSIKETEEAPAQTA--------SSAPSNYSSRPERSSNHQKELAG 390
>gi|422008081|ref|ZP_16355066.1| 30S ribosomal protein S1 [Providencia rettgeri Dmel1]
gi|414096216|gb|EKT57875.1| 30S ribosomal protein S1 [Providencia rettgeri Dmel1]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 446 --AATKKGAIVTGKVIAVDAKGATVELTLGV 474
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 471
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ G + SE S D ++D +LN GD+V K +DR+ I LS++ +E
Sbjct: 472 LG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAKDEAD 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + +++
Sbjct: 527 EKDAVAAVNKQEDTAFGNNA 546
Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|261344290|ref|ZP_05971934.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
gi|282567894|gb|EFB73429.1| ribosomal protein S1 [Providencia rustigianii DSM 4541]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVTGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 446 --AATKKGAIVTGKVIAVDAKGATVELTLGV 474
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 471
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ G + SE S D ++D +LN GD+V K +DR+ I LS++ +E
Sbjct: 472 LG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAKDESD 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + +++
Sbjct: 527 EKDAVAAVNKQEDTAFGNNA 546
Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|356532488|ref|XP_003534804.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 402
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 21/160 (13%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGL 79
+I K ++ +EE +LV S + AV + ++ + + G + YGAFI +
Sbjct: 219 VIPFKFVEVDEEQSRLVLSHRKAV-AESQGQLGIGSVVTGSVQSIKPYGAFIDI------ 271
Query: 80 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP----- 134
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 272 GGISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIR 331
Query: 135 ----LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 332 NPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 371
>gi|291326411|ref|ZP_06124376.2| ribosomal protein S1 [Providencia rettgeri DSM 1131]
gi|291314430|gb|EFE54883.1| ribosomal protein S1 [Providencia rettgeri DSM 1131]
Length = 569
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 458 --AATKKGAIVTGKVIAVDAKGATVELTLGV 486
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 424 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 483
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ G + SE S D ++D +LN GD+V K +DR+ I LS++ +E
Sbjct: 484 LG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAKDEAD 538
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + +++
Sbjct: 539 EKDAVAAVNKQEDTAFGNNA 558
>gi|166367132|ref|YP_001659405.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|425437110|ref|ZP_18817537.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|425449492|ref|ZP_18829331.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|425471179|ref|ZP_18850039.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440754860|ref|ZP_20934062.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
gi|166089505|dbj|BAG04213.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|389677991|emb|CCH93122.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|389763766|emb|CCI09762.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|389882968|emb|CCI36602.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440175066|gb|ELP54435.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
Length = 330
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 265 KQLEPEP 271
>gi|113955395|ref|YP_729757.1| 30S ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113882746|gb|ABI47704.1| ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 305
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 152 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 210
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 211 -----GVSGLLHISEISHEHIETPHSVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 264
>gi|406992102|gb|EKE11509.1| RNA binding S1 protein [uncultured bacterium]
Length = 413
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 21/148 (14%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG------ 64
+ I + K L + V+++ A+ E +KL+ SEK A K + + ++ VG
Sbjct: 177 KNKILTLLKKLVSQELEVRILDADRESEKLIVSEKAAQSEK--DKETISNLKVGDVVEGE 234
Query: 65 ----RDYGAFIHLRFPDGLYH-------LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113
D+GAF+ P+ L GLVH+SE++W LI++ RDI GD+V+ K+
Sbjct: 235 VSGVVDFGAFVKFFQPNPEKEKPTEEDKLEGLVHISELAWQLIENPRDITKVGDKVQAKI 294
Query: 114 IKIDREKSRITLSIKQLEEDPLLETLEK 141
I ID +K I+LSI+ L++DP EK
Sbjct: 295 IGIDNDK--ISLSIRALQKDPWSAVEEK 320
>gi|397687381|ref|YP_006524700.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 10701]
gi|395808937|gb|AFN78342.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 10701]
Length = 561
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P++ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPENTRVMARVTNLT 288
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFKKGDELDTVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|436747420|ref|ZP_20520024.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434971511|gb|ELL64015.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
Length = 538
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 185 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 238
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 239 GLKQLGEDP 247
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 313 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 367
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 368 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 426
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 427 --ALNKKGAIVTGKVTAVDAKGATVELADGV 455
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 446 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 500
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 501 RAKDEADEKDAIATVNKQEDANFSNNA 527
>gi|409394007|ref|ZP_11245258.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
gi|409396158|ref|ZP_11247179.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
gi|419955062|ref|ZP_14471194.1| 30S ribosomal protein S1 [Pseudomonas stutzeri TS44]
gi|387968046|gb|EIK52339.1| 30S ribosomal protein S1 [Pseudomonas stutzeri TS44]
gi|409119411|gb|EKM95795.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
gi|409121434|gb|EKM97556.1| 30S ribosomal protein S1 [Pseudomonas sp. Chol1]
Length = 560
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P++ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPENTRVMARVTNLT 288
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +SS+ N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFKKGDELDTVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|291616906|ref|YP_003519648.1| RpsA [Pantoea ananatis LMG 20103]
gi|378767885|ref|YP_005196355.1| 30S ribosomal protein S1 [Pantoea ananatis LMG 5342]
gi|386015271|ref|YP_005933552.1| 30S ribosomal protein S1 [Pantoea ananatis AJ13355]
gi|386079987|ref|YP_005993512.1| 30S ribosomal protein S1 [Pantoea ananatis PA13]
gi|291151936|gb|ADD76520.1| RpsA [Pantoea ananatis LMG 20103]
gi|327393334|dbj|BAK10756.1| 30S ribosomal protein S1 RpsA [Pantoea ananatis AJ13355]
gi|354989168|gb|AER33292.1| 30S ribosomal protein S1 [Pantoea ananatis PA13]
gi|365187368|emb|CCF10318.1| 30S ribosomal protein S1 [Pantoea ananatis LMG 5342]
Length = 569
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 399 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 458 --TLNKKGAIVTGKVTAVDAKGATVELADGV 486
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS+
Sbjct: 477 GATVEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSV 531
Query: 128 K 128
+
Sbjct: 532 R 532
Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|425459139|ref|ZP_18838625.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443654187|ref|ZP_21131250.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
gi|159028923|emb|CAO87384.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389823195|emb|CCI28787.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443333859|gb|ELS48397.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
Length = 330
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 265 KQLEPEP 271
>gi|422018738|ref|ZP_16365293.1| 30S ribosomal protein S1 [Providencia alcalifaciens Dmel2]
gi|414104332|gb|EKT65899.1| 30S ribosomal protein S1 [Providencia alcalifaciens Dmel2]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +RD +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRD-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 446 --AATKKGAIVTGKVIAVDAKGATVELTLGV 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 471
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ G + SE S D ++D +LN GD+V K +DR+ I LS++ +E
Sbjct: 472 LG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAKDEAD 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + +++
Sbjct: 527 EKDAVAAVNKQEDTAFGNNA 546
Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|374336157|ref|YP_005092844.1| 30S ribosomal protein S1 [Oceanimonas sp. GK1]
gi|372985844|gb|AEY02094.1| 30S ribosomal protein S1 [Oceanimonas sp. GK1]
Length = 556
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 18/129 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYG 68
L G + KVI+ +++ +V S + + + S+ +E++ G+ DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIETENSAEREQLLENLQEGQEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDPLLE 137
QL EDP ++
Sbjct: 261 QLGEDPWVD 269
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W ++ N D G+
Sbjct: 313 NKNIHPSKVVSVGDNVDVMVLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ D +RD +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNANGDDAVRD-FKKGDEIEAVVLQVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ++EDP
Sbjct: 427 ERISLGVKQIDEDPF 441
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W ++R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVDIANRYPEGTRLAGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSVGDNVDVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + V+++S D I+D +LN G+EV + + IDR+ ++LSI+ + EE ++TL
Sbjct: 476 GYIRVADISRDRIEDASTVLNAGEEVEARFMGIDRKNRTVSLSIRAKDEAEEKAAIDTLN 535
Query: 141 K 141
+
Sbjct: 536 Q 536
>gi|319956088|ref|YP_004167351.1| 30S ribosomal protein s1 [Nitratifractor salsuginis DSM 16511]
gi|319418492|gb|ADV45602.1| SSU ribosomal protein S1P [Nitratifractor salsuginis DSM 16511]
Length = 556
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 13/121 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V+VI+ + E ++L S K + +++ + V DI G D+GAF+ L
Sbjct: 332 GDEIDVEVIEIDREKRRLRVSRKSLLPKPMEEFAQKHRVGDIVTGTVSSVTDFGAFVRL- 390
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG + GL+H E SWD + +D+ N GDEV VK+IKID + +I+LS K LE+ P
Sbjct: 391 --DG--GVEGLLHNQEASWDKSKRAKDLFNVGDEVEVKIIKIDTDAGKISLSKKALEKSP 446
Query: 135 L 135
+
Sbjct: 447 V 447
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YG F+ L L +HVSE+SWD ++ +D LN GDE+ V+VI+IDREK R+ +
Sbjct: 297 YGVFVDLG-----EDLEAFLHVSEISWDKNVKHPKDFLNVGDEIDVEVIEIDREKRRLRV 351
Query: 126 SIKQLEEDPLLETLEK 141
S K L P+ E +K
Sbjct: 352 SRKSLLPKPMEEFAQK 367
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YG F+ + DGL H + + H V+ EGDEV V + D++K ++LS
Sbjct: 212 YGMFVDVGGMDGLVHYSQISHKGPVNP------SKYYQEGDEVNVVALDYDKKKRHLSLS 265
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP 166
IK+ DP E +++++ + D+ + + SN IEP
Sbjct: 266 IKEANPDP-WENIDEILG-----VGDTVTATVSN---IEP 296
>gi|212709792|ref|ZP_03317920.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
30120]
gi|212687603|gb|EEB47131.1| hypothetical protein PROVALCAL_00840 [Providencia alcalifaciens DSM
30120]
Length = 582
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 229 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 282
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 283 GLKQLGEDP 291
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 357 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 411
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +RD +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 412 IDGLVHLSDISWNVAGEEAVRD-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 470
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 471 --AATKKGAIVTGKVIAVDAKGATVELTLGV 499
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 437 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 496
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ G + SE S D ++D +LN GD+V K +DR+ I LS++ +E
Sbjct: 497 LG-----VEGYLRASEASRDRVEDATLVLNVGDDVEAKYTGVDRKNRVINLSVRAKDEAD 551
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + +++
Sbjct: 552 EKDAVAAVNKQEDTAFGNNA 571
Score = 35.4 bits (80), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 263 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 322
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 323 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 376
Query: 133 DP 134
+P
Sbjct: 377 NP 378
>gi|161503891|ref|YP_001571003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|339998838|ref|YP_004729721.1| 30S ribosomal protein S1 [Salmonella bongori NCTC 12419]
gi|423139411|ref|ZP_17127049.1| ribosomal protein S1 [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|160865238|gb|ABX21861.1| hypothetical protein SARI_01981 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|339512199|emb|CCC29930.1| 30S ribosomal protein S1 [Salmonella bongori NCTC 12419]
gi|379051965|gb|EHY69856.1| ribosomal protein S1 [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|421421477|ref|ZP_15871145.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396040792|gb|EJI49415.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + GS+++ + + T+E G+
Sbjct: 446 --ALNKKGSIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.4 bits (80), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|317968718|ref|ZP_07970108.1| 30S ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 354
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 205 LVAEFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIG- 263
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 264 -----GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 317
>gi|218247838|ref|YP_002373209.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8801]
gi|257060841|ref|YP_003138729.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8802]
gi|218168316|gb|ACK67053.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256591007|gb|ACV01894.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 331
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + VG + Y
Sbjct: 152 STREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVVGSVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N D ++V +I +D E+ RI+LS
Sbjct: 212 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFNVNDALKVMIIDLDAERGRISLST 265
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 266 KQLEPEP 272
>gi|16759851|ref|NP_455468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16764341|ref|NP_459956.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29142376|ref|NP_805718.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56413969|ref|YP_151044.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62179505|ref|YP_215922.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161614783|ref|YP_001588748.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|168263527|ref|ZP_02685500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168466572|ref|ZP_02700434.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194444412|ref|YP_002040179.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194451518|ref|YP_002044973.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194468516|ref|ZP_03074500.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194734164|ref|YP_002114032.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197251361|ref|YP_002145899.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197261950|ref|ZP_03162024.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197362892|ref|YP_002142529.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198243294|ref|YP_002214905.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200390727|ref|ZP_03217338.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204929888|ref|ZP_03220909.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205352188|ref|YP_002225989.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856372|ref|YP_002243023.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213161607|ref|ZP_03347317.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424598|ref|ZP_03357381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213609752|ref|ZP_03369578.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213852007|ref|ZP_03381539.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224582790|ref|YP_002636588.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238913246|ref|ZP_04657083.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289825856|ref|ZP_06545024.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|374981648|ref|ZP_09722972.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|375000692|ref|ZP_09725032.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|375113828|ref|ZP_09758998.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|375118391|ref|ZP_09763558.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375122982|ref|ZP_09768146.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378444418|ref|YP_005232050.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378449341|ref|YP_005236700.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378698876|ref|YP_005180833.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378960118|ref|YP_005217604.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|378983539|ref|YP_005246694.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378988325|ref|YP_005251489.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379700147|ref|YP_005241875.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383495720|ref|YP_005396409.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386590846|ref|YP_006087246.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|416421984|ref|ZP_11689888.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416431501|ref|ZP_11695655.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416441519|ref|ZP_11701731.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416443807|ref|ZP_11703283.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416452583|ref|ZP_11709078.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416459225|ref|ZP_11713734.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416467500|ref|ZP_11717412.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416477644|ref|ZP_11721529.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416490841|ref|ZP_11726800.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416500331|ref|ZP_11731402.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416505309|ref|ZP_11733743.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416523292|ref|ZP_11740969.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416528875|ref|ZP_11744099.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416535883|ref|ZP_11748077.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416545689|ref|ZP_11753483.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416551252|ref|ZP_11756425.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416559954|ref|ZP_11760919.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416571986|ref|ZP_11767069.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416578379|ref|ZP_11770499.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416582317|ref|ZP_11772591.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416593628|ref|ZP_11780034.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599355|ref|ZP_11783589.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416604857|ref|ZP_11786478.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416612505|ref|ZP_11791530.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618297|ref|ZP_11794540.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416628278|ref|ZP_11799491.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416641208|ref|ZP_11805355.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416650208|ref|ZP_11810316.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416658799|ref|ZP_11814492.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416666192|ref|ZP_11817343.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416682825|ref|ZP_11824072.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416692586|ref|ZP_11826462.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416707438|ref|ZP_11832536.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714736|ref|ZP_11838054.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416716514|ref|ZP_11838861.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416725419|ref|ZP_11845789.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416728234|ref|ZP_11847507.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416738785|ref|ZP_11853543.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416751794|ref|ZP_11860254.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759252|ref|ZP_11864137.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416760940|ref|ZP_11865148.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770547|ref|ZP_11871886.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417325408|ref|ZP_12111380.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417332734|ref|ZP_12116520.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|417340517|ref|ZP_12121813.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417348070|ref|ZP_12127115.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417356919|ref|ZP_12132345.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417364627|ref|ZP_12137497.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|417372405|ref|ZP_12142706.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|417389799|ref|ZP_12153477.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|417414510|ref|ZP_12158415.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|417456065|ref|ZP_12163575.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|417474054|ref|ZP_12169272.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417517412|ref|ZP_12180001.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|417528959|ref|ZP_12185130.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|417538226|ref|ZP_12190883.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|418484308|ref|ZP_13053307.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418490855|ref|ZP_13057390.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418495226|ref|ZP_13061668.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418500140|ref|ZP_13066539.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418501962|ref|ZP_13068338.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418509779|ref|ZP_13076071.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418510816|ref|ZP_13077090.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418526800|ref|ZP_13092769.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418761649|ref|ZP_13317789.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418768219|ref|ZP_13324274.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418769371|ref|ZP_13325401.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777533|ref|ZP_13333461.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418779234|ref|ZP_13335138.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418787029|ref|ZP_13342836.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418789578|ref|ZP_13345364.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418795918|ref|ZP_13351616.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418798171|ref|ZP_13353848.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418805057|ref|ZP_13360650.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418808460|ref|ZP_13364015.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418812617|ref|ZP_13368140.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418814731|ref|ZP_13370243.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418819191|ref|ZP_13374645.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418833469|ref|ZP_13388393.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837751|ref|ZP_13392621.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841059|ref|ZP_13395881.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418846277|ref|ZP_13401049.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418848382|ref|ZP_13403121.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418852427|ref|ZP_13407127.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418856933|ref|ZP_13411567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418863818|ref|ZP_13418355.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418868956|ref|ZP_13423397.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419728212|ref|ZP_14255179.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419733096|ref|ZP_14259998.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419739229|ref|ZP_14265980.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419744209|ref|ZP_14270866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748112|ref|ZP_14274612.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|419788185|ref|ZP_14313878.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795608|ref|ZP_14321202.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421358404|ref|ZP_15808701.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362375|ref|ZP_15812627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421367574|ref|ZP_15817767.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374061|ref|ZP_15824194.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421378246|ref|ZP_15828335.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421382853|ref|ZP_15832899.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421387418|ref|ZP_15837417.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421391522|ref|ZP_15841488.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421395274|ref|ZP_15845213.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421401540|ref|ZP_15851416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421402859|ref|ZP_15852713.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421410225|ref|ZP_15860006.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412492|ref|ZP_15862246.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416484|ref|ZP_15866203.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421425346|ref|ZP_15874982.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421432217|ref|ZP_15881794.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421434470|ref|ZP_15884019.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421438938|ref|ZP_15888432.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421446495|ref|ZP_15895907.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447401|ref|ZP_15896802.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421571959|ref|ZP_16017624.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421576179|ref|ZP_16021783.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421585843|ref|ZP_16031332.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|422025092|ref|ZP_16371552.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422030663|ref|ZP_16376857.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427547642|ref|ZP_18926865.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427565000|ref|ZP_18932078.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427585073|ref|ZP_18936892.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427607498|ref|ZP_18941721.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427630159|ref|ZP_18946127.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427652851|ref|ZP_18950880.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427660827|ref|ZP_18956307.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427667161|ref|ZP_18961112.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427746182|ref|ZP_18965627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436793644|ref|ZP_20521807.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436811641|ref|ZP_20530521.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436816012|ref|ZP_20533563.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436839160|ref|ZP_20537480.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436851607|ref|ZP_20542206.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436858369|ref|ZP_20546889.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436865545|ref|ZP_20551512.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436875280|ref|ZP_20557187.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436883594|ref|ZP_20562023.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436887545|ref|ZP_20563874.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436896665|ref|ZP_20569421.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436906643|ref|ZP_20575489.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436911406|ref|ZP_20577235.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436920880|ref|ZP_20583351.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436930734|ref|ZP_20588959.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436935358|ref|ZP_20590798.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436942547|ref|ZP_20595493.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436951958|ref|ZP_20601013.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436964331|ref|ZP_20605967.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436974363|ref|ZP_20611032.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436986554|ref|ZP_20615444.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436990299|ref|ZP_20616866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437012513|ref|ZP_20625026.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437020514|ref|ZP_20627325.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437032108|ref|ZP_20631752.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437044953|ref|ZP_20637500.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437052667|ref|ZP_20642090.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437057877|ref|ZP_20644724.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437065632|ref|ZP_20649223.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437075570|ref|ZP_20653933.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437086865|ref|ZP_20660874.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437090786|ref|ZP_20662894.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437113402|ref|ZP_20668722.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437126212|ref|ZP_20674481.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437134290|ref|ZP_20678714.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437141091|ref|ZP_20682935.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437142890|ref|ZP_20683929.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437155615|ref|ZP_20691834.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437161549|ref|ZP_20695485.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437171469|ref|ZP_20700573.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437177558|ref|ZP_20704038.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437183973|ref|ZP_20707988.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437241104|ref|ZP_20714400.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437260935|ref|ZP_20718005.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437268979|ref|ZP_20722264.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281764|ref|ZP_20728765.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437300266|ref|ZP_20733030.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307839|ref|ZP_20735044.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437321480|ref|ZP_20738708.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437336410|ref|ZP_20743017.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437404006|ref|ZP_20751965.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437443668|ref|ZP_20758054.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437461562|ref|ZP_20762482.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437478743|ref|ZP_20767756.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437491871|ref|ZP_20771515.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437506565|ref|ZP_20775848.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437541465|ref|ZP_20782509.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437563751|ref|ZP_20786897.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437575435|ref|ZP_20790231.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437593373|ref|ZP_20795390.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437600262|ref|ZP_20797226.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437613485|ref|ZP_20801563.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437640518|ref|ZP_20807764.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437659032|ref|ZP_20811959.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437682527|ref|ZP_20818645.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437693083|ref|ZP_20821334.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437715442|ref|ZP_20827964.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437730693|ref|ZP_20831240.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437813493|ref|ZP_20841872.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437832225|ref|ZP_20844358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437925829|ref|ZP_20850907.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437970924|ref|ZP_20852809.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438084628|ref|ZP_20858396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438104114|ref|ZP_20865818.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438112673|ref|ZP_20869270.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438146086|ref|ZP_20875909.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440764452|ref|ZP_20943480.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440769400|ref|ZP_20948358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440770875|ref|ZP_20949803.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445134814|ref|ZP_21383049.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445141620|ref|ZP_21385561.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445153473|ref|ZP_21391397.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445177969|ref|ZP_21397866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445195981|ref|ZP_21400530.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445224787|ref|ZP_21403576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445263334|ref|ZP_21409924.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445331317|ref|ZP_21414157.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445346809|ref|ZP_21418942.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445365105|ref|ZP_21425095.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|452120856|ref|YP_007471104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|25294435|pir||AC0614 30S ribosomal protein S1 [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16419493|gb|AAL19915.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16502144|emb|CAD05381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138006|gb|AAO69567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128226|gb|AAV77732.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62127138|gb|AAX64841.1| 30S ribosomal subunit protein S1 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161364147|gb|ABX67915.1| hypothetical protein SPAB_02535 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403075|gb|ACF63297.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194409822|gb|ACF70041.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194454880|gb|EDX43719.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194709666|gb|ACF88887.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195631046|gb|EDX49632.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197094369|emb|CAR59882.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197215064|gb|ACH52461.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197240205|gb|EDY22825.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197937810|gb|ACH75143.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603172|gb|EDZ01718.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204320882|gb|EDZ06083.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205271969|emb|CAR36813.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205347781|gb|EDZ34412.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206708175|emb|CAR32468.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467317|gb|ACN45147.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261246197|emb|CBG24001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992719|gb|ACY87604.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157524|emb|CBW17014.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911967|dbj|BAJ35941.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223304|gb|EFX48373.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616411|gb|EFY13320.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322619661|gb|EFY16536.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622643|gb|EFY19488.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629792|gb|EFY26567.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632486|gb|EFY29232.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637019|gb|EFY33722.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641441|gb|EFY38079.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646093|gb|EFY42609.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649605|gb|EFY46036.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654093|gb|EFY50416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658625|gb|EFY54887.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663482|gb|EFY59684.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670218|gb|EFY66358.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322671454|gb|EFY67576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676810|gb|EFY72877.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682735|gb|EFY78754.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686414|gb|EFY82396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322713974|gb|EFZ05545.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323129246|gb|ADX16676.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|323195937|gb|EFZ81104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199775|gb|EFZ84864.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202768|gb|EFZ87804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211515|gb|EFZ96354.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323218000|gb|EGA02715.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219927|gb|EGA04403.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226705|gb|EGA10901.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229802|gb|EGA13925.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233027|gb|EGA17123.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240762|gb|EGA24804.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243078|gb|EGA27099.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249759|gb|EGA33661.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323252768|gb|EGA36606.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323254794|gb|EGA38595.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260005|gb|EGA43633.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267994|gb|EGA51473.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269841|gb|EGA53290.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326622658|gb|EGE29003.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326627232|gb|EGE33575.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332987872|gb|AEF06855.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|353075380|gb|EHB41140.1| ribosomal protein S1 [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353576107|gb|EHC38660.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353576632|gb|EHC39033.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353580808|gb|EHC41940.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|353594781|gb|EHC52193.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353596602|gb|EHC53550.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353605368|gb|EHC59898.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353620721|gb|EHC70752.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353625575|gb|EHC74337.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353634534|gb|EHC81083.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353648858|gb|EHC91643.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353651764|gb|EHC93774.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|353666962|gb|EHD04612.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353667772|gb|EHD05187.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|357959022|gb|EHJ83424.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|363550028|gb|EHL34357.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363553147|gb|EHL37411.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363556243|gb|EHL40458.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363565462|gb|EHL49495.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363567102|gb|EHL51109.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363573542|gb|EHL57421.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363575377|gb|EHL59230.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366058888|gb|EHN23167.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366059082|gb|EHN23356.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366064405|gb|EHN28603.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366069607|gb|EHN33730.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366076409|gb|EHN40447.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366077874|gb|EHN41883.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366085361|gb|EHN49247.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366828391|gb|EHN55278.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372205408|gb|EHP18923.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|374353990|gb|AEZ45751.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|380462541|gb|AFD57944.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|381299747|gb|EIC40816.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381300362|gb|EIC41425.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381301768|gb|EIC42822.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381309314|gb|EIC50151.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381315550|gb|EIC56311.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383797890|gb|AFH44972.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|392612493|gb|EIW94970.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392618152|gb|EIX00563.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392732148|gb|EIZ89360.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392739385|gb|EIZ96519.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392739667|gb|EIZ96799.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392743736|gb|EJA00803.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392746312|gb|EJA03327.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392753701|gb|EJA10627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392757808|gb|EJA14691.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392759923|gb|EJA16763.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392766828|gb|EJA23600.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392768559|gb|EJA25311.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392776037|gb|EJA32727.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392776648|gb|EJA33335.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392793923|gb|EJA50357.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392795283|gb|EJA51659.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392795507|gb|EJA51875.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392798109|gb|EJA54396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392809193|gb|EJA65231.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392810563|gb|EJA66576.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392823694|gb|EJA79490.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392829250|gb|EJA84929.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392832291|gb|EJA87913.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392835558|gb|EJA91151.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392837646|gb|EJA93216.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|395986094|gb|EJH95258.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395986844|gb|EJH96007.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990199|gb|EJH99330.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395994675|gb|EJI03745.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395997551|gb|EJI06592.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|395997961|gb|EJI07001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396008243|gb|EJI17177.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396010485|gb|EJI19397.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396014011|gb|EJI22898.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396021605|gb|EJI30431.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396022358|gb|EJI31171.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396029890|gb|EJI38625.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396039580|gb|EJI48204.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396044661|gb|EJI53256.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396051468|gb|EJI59986.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396057816|gb|EJI66286.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396060221|gb|EJI68667.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396062077|gb|EJI70490.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396072166|gb|EJI80481.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074964|gb|EJI83243.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402518813|gb|EJW26183.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402519635|gb|EJW26996.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402529251|gb|EJW36489.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414021863|gb|EKT05381.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414022053|gb|EKT05555.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414022191|gb|EKT05684.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414034204|gb|EKT17138.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414035550|gb|EKT18416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414039093|gb|EKT21781.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414050647|gb|EKT32814.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414051654|gb|EKT33742.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414054400|gb|EKT36349.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414060176|gb|EKT41698.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414066576|gb|EKT47114.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|434938717|gb|ELL45646.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434963278|gb|ELL56396.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434964272|gb|ELL57294.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434974128|gb|ELL66516.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434980468|gb|ELL72389.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434986909|gb|ELL78560.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434990521|gb|ELL82071.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434994871|gb|ELL86188.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|434996580|gb|ELL87896.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435002039|gb|ELL93128.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435009255|gb|ELM00041.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435015220|gb|ELM05777.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435016554|gb|ELM07080.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435025651|gb|ELM15782.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435027002|gb|ELM17131.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435032389|gb|ELM22333.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435038196|gb|ELM27977.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435042746|gb|ELM32463.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435048188|gb|ELM37753.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435052425|gb|ELM41927.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435052878|gb|ELM42352.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435061316|gb|ELM50544.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063833|gb|ELM52981.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435070456|gb|ELM59440.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435079142|gb|ELM67853.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435080044|gb|ELM68737.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435080772|gb|ELM69440.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435091267|gb|ELM79668.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435093690|gb|ELM82029.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435099307|gb|ELM87515.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435103011|gb|ELM91114.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435104867|gb|ELM92904.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435113820|gb|ELN01652.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435116366|gb|ELN04104.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435117293|gb|ELN05005.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435119769|gb|ELN07371.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435128795|gb|ELN16121.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435138483|gb|ELN25510.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435141792|gb|ELN28723.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435144606|gb|ELN31438.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435145991|gb|ELN32785.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435155238|gb|ELN41796.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435162031|gb|ELN48237.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435163391|gb|ELN49527.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435168382|gb|ELN54214.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435172629|gb|ELN58156.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435178669|gb|ELN63866.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435179107|gb|ELN64265.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435186353|gb|ELN71195.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435196670|gb|ELN81001.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435197479|gb|ELN81762.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435205705|gb|ELN89287.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435210854|gb|ELN94083.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435219985|gb|ELO02303.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435221562|gb|ELO03835.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435228976|gb|ELO10372.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435234756|gb|ELO15610.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435236381|gb|ELO17123.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435236762|gb|ELO17482.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435245400|gb|ELO25487.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435252372|gb|ELO31933.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435262538|gb|ELO41627.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435264420|gb|ELO43337.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435269784|gb|ELO48301.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435270084|gb|ELO48588.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435276821|gb|ELO54813.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435279458|gb|ELO57233.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435285069|gb|ELO62475.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435289314|gb|ELO66288.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435296548|gb|ELO72924.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435302833|gb|ELO78761.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435312934|gb|ELO86737.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435319644|gb|ELO92453.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435322495|gb|ELO94768.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435330751|gb|ELP02017.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435339442|gb|ELP08383.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|436414488|gb|ELP12416.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436416602|gb|ELP14507.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436423447|gb|ELP21258.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|444846517|gb|ELX71685.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444850651|gb|ELX75749.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444852520|gb|ELX77598.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444855752|gb|ELX80796.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444864923|gb|ELX89705.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444868362|gb|ELX93005.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444877421|gb|ELY01568.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444877648|gb|ELY01788.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444882918|gb|ELY06832.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444888456|gb|ELY12028.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|451909860|gb|AGF81666.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
Length = 420
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGRDYGAFIHLRFPDGLY 80
G + +KV + + E K++ S+KD + +Y+++ + I +G++ + P G++
Sbjct: 174 GRTLRMKVKELDREKNKVILSQKDVLDEEYNAKKQEILNSIEIGQEIEGTVQRLTPFGVF 233
Query: 81 ----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GLVH+SE++W +++ +++ EGD+V+V+V+K+D E RI+LS+K + P
Sbjct: 234 VDIGGIDGLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDPENERISLSMKAAQPGPWE 293
Query: 137 ETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + + Q G+V+S + + +E PG+
Sbjct: 294 QLGDHI--QVGAVVSGTVKRLVNFGAFVEIAPGV 325
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E +++ S K A W + + V + G ++GAF+ +
Sbjct: 263 GDKVKVQVLKVDPENERISLSMKAAQPGPWEQLGDHIQVGAVVSGTVKRLVNFGAFVEI- 321
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+S++S I ++L EG EV+VK++ ++ ++ R++LSIK+ EE P
Sbjct: 322 ----APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRVSLSIKETEEAP 377
>gi|237808314|ref|YP_002892754.1| 30S ribosomal protein S1 [Tolumonas auensis DSM 9187]
gi|237500575|gb|ACQ93168.1| ribosomal protein S1 [Tolumonas auensis DSM 9187]
Length = 556
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + + K P+ + ++++
Sbjct: 258 GLKQLGEDPWV-AIAKRYPEGARLTGRVTNLT 288
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +++ D G+
Sbjct: 313 NKNIHPSKVVNVGDTVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHAKGDRVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNATGEDAVREFKKGDEIEAVVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+EEDP + L + G+++ + S TIE G+
Sbjct: 428 RISLGVKQIEEDPFNKYLSD--NKKGAIVKGKVTAVDSKGATIELEEGV 474
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGARLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDTVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|409249392|ref|YP_006885222.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|417499090|ref|ZP_12173579.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|320085220|emb|CBY95006.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|353653885|gb|EHC95306.1| SSU ribosomal protein S1p [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
>gi|421883094|ref|ZP_16314339.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379987370|emb|CCF86612.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 557
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVDGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|328957351|ref|YP_004374737.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
gi|328673675|gb|AEB29721.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
Length = 406
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VK++ NEE ++ S K+ + W+ R V + G +GAF+ +
Sbjct: 252 GEEVNVKILSVNEEEGRISLSIKETLPGPWDDIEERAAVGSVLDGLVKRLTSFGAFVEV- 310
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S + I ++LNEGDE++VKV++++ R++LSIK LEE P
Sbjct: 311 FPG----VEGLVHISQISHNHIATPHEVLNEGDEIKVKVLEVNPTDQRLSLSIKALEEKP 366
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 21/145 (14%)
Query: 30 VIQA-NEEMKKLVFS---EKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGL 85
V++A NEE KK + + E D V K + N +GAFI L DGL
Sbjct: 187 VVEAENEEKKKDLLNHLVEGDIVKGKIARLTN---------FGAFIDLGGVDGL------ 231
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145
VH+S+++++ ++D D+L G+EV VK++ ++ E+ RI+LSIK+ P + E+
Sbjct: 232 VHISQIAYEHVKDPADVLTVGEEVNVKILSVNEEEGRISLSIKETLPGPWDDIEERAAV- 290
Query: 146 DGSVISDSSSMSSSNSNTIEPLPGL 170
GSV+ +S +E PG+
Sbjct: 291 -GSVLDGLVKRLTSFGAFVEVFPGV 314
>gi|71278192|ref|YP_269055.1| 30S ribosomal protein S1 [Colwellia psychrerythraea 34H]
gi|71143932|gb|AAZ24405.1| ribosomal protein S1 [Colwellia psychrerythraea 34H]
Length = 553
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GMKQLGEDP 266
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 15/134 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 313 NKNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIANPWEEFAKNFNKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD-IRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW ++ +RD +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWAGGEEAVRD-YKKGDEIDAIVLQVDPERE 426
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQ E+DP
Sbjct: 427 RISLGVKQAEDDPF 440
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W ++R GR DYG F+ ++
Sbjct: 238 GDEIQVKVLKFDRERTRVSLGMKQLGEDPWVAIANRYPEGSKLSGRVTNLTDYGCFVEIQ 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + VS++S + I+D +L GD+V + + +DR+ I+LSIK Q +E ++ L
Sbjct: 475 GYLRVSDISVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIKAKDQADEREAMDNLN 534
Query: 141 KV 142
+V
Sbjct: 535 QV 536
>gi|294636910|ref|ZP_06715237.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
gi|451967155|ref|ZP_21920401.1| 30S ribosomal protein S1 [Edwardsiella tarda NBRC 105688]
gi|291089863|gb|EFE22424.1| ribosomal protein S1 [Edwardsiella tarda ATCC 23685]
gi|451314087|dbj|GAC65763.1| 30S ribosomal protein S1 [Edwardsiella tarda NBRC 105688]
Length = 556
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYIS--LNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDEAE 526
Query: 135 LLETLEKVIPQDGSVISDSSS 155
+ + V QD + S++ +
Sbjct: 527 EKDAMAAVNNQDDANFSNAMA 547
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|358449186|ref|ZP_09159676.1| 30S ribosomal protein S1 [Marinobacter manganoxydans MnI7-9]
gi|357226603|gb|EHJ05078.1| 30S ribosomal protein S1 [Marinobacter manganoxydans MnI7-9]
Length = 564
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEISVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP ++
Sbjct: 258 GLKQLGEDPWVD 269
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K V W +SS N D G+
Sbjct: 313 NKNIHPSKVVQVGDEVGVMILDIDEERRRISLGIKQCVSNPWEDFSSNFNKGDRISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDEV ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-YKKGDEVETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQLE DP E ++ + GS++ + S + + TI
Sbjct: 427 ERISLGIKQLESDPFAEFVQ--LNDKGSIVKGTVSAVDAKAATI 468
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVGVMILDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCVSNP 353
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ ++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVKSKDVEDDKQALE 532
Query: 141 KVIPQDGSVISDSSSMS 157
V + S ++++
Sbjct: 533 NVRTKTAETSSGATTIG 549
>gi|269139520|ref|YP_003296221.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
gi|387868096|ref|YP_005699565.1| 30S ribosomal protein S1 [Edwardsiella tarda FL6-60]
gi|267985181|gb|ACY85010.1| 30S ribosomal protein S1 [Edwardsiella tarda EIB202]
gi|304559409|gb|ADM42073.1| SSU ribosomal protein S1p [Edwardsiella tarda FL6-60]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYIS--LNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDEAE 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V QD + S+++
Sbjct: 527 EKDAMAAVNSQDDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|157369952|ref|YP_001477941.1| 30S ribosomal protein S1 [Serratia proteamaculans 568]
gi|157321716|gb|ABV40813.1| ribosomal protein S1 [Serratia proteamaculans 568]
Length = 559
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP L + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLS--MNKKGTIVTGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELAGGV 474
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D I+D +LN GD+V K +DR+ ++LS++ +E
Sbjct: 476 GYLRASEASRDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|425463814|ref|ZP_18843144.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
gi|389829070|emb|CCI29843.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
Length = 330
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 265 KQLEPEP 271
>gi|270261192|ref|ZP_06189465.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
gi|333926540|ref|YP_004500119.1| 30S ribosomal protein S1 [Serratia sp. AS12]
gi|333931493|ref|YP_004505071.1| 30S ribosomal protein S1 [Serratia plymuthica AS9]
gi|386328363|ref|YP_006024533.1| 30S ribosomal protein S1 [Serratia sp. AS13]
gi|386825083|ref|ZP_10112210.1| 30S ribosomal protein S1 [Serratia plymuthica PRI-2C]
gi|421782733|ref|ZP_16219187.1| ribosomal protein S1 [Serratia plymuthica A30]
gi|270044676|gb|EFA17767.1| 30S ribosomal protein S1 [Serratia odorifera 4Rx13]
gi|333473100|gb|AEF44810.1| ribosomal protein S1 [Serratia plymuthica AS9]
gi|333490600|gb|AEF49762.1| ribosomal protein S1 [Serratia sp. AS12]
gi|333960696|gb|AEG27469.1| ribosomal protein S1 [Serratia sp. AS13]
gi|386377940|gb|EIJ18750.1| 30S ribosomal protein S1 [Serratia plymuthica PRI-2C]
gi|407755142|gb|EKF65271.1| ribosomal protein S1 [Serratia plymuthica A30]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--MNKKGTIVTGKVTAVDAKGATVELAGGV 474
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D I+D +LN GD+V K +DR+ ++LS++ +E
Sbjct: 476 GYLRASEASRDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|123441852|ref|YP_001005835.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238749770|ref|ZP_04611275.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
gi|238763339|ref|ZP_04624303.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
gi|238784530|ref|ZP_04628538.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
gi|238789317|ref|ZP_04633104.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
gi|238792399|ref|ZP_04636033.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
gi|238795851|ref|ZP_04639364.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
gi|332162206|ref|YP_004298783.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386307864|ref|YP_006003920.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241223|ref|ZP_12867754.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420259014|ref|ZP_14761734.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433548185|ref|ZP_20504235.1| SSU ribosomal protein S1p [Yersinia enterocolitica IP 10393]
gi|122088813|emb|CAL11619.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238698438|gb|EEP91191.1| 30S ribosomal protein S1 [Yersinia kristensenii ATCC 33638]
gi|238712425|gb|EEQ04638.1| 30S ribosomal protein S1 [Yersinia rohdei ATCC 43380]
gi|238714593|gb|EEQ06597.1| 30S ribosomal protein S1 [Yersinia bercovieri ATCC 43970]
gi|238720314|gb|EEQ12117.1| 30S ribosomal protein S1 [Yersinia mollaretii ATCC 43969]
gi|238722649|gb|EEQ14302.1| 30S ribosomal protein S1 [Yersinia frederiksenii ATCC 33641]
gi|238728325|gb|EEQ19845.1| 30S ribosomal protein S1 [Yersinia intermedia ATCC 29909]
gi|318606262|emb|CBY27760.1| SSU ribosomal protein S1p [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666436|gb|ADZ43080.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862894|emb|CBX73031.1| 30S ribosomal protein S1 [Yersinia enterocolitica W22703]
gi|351779326|gb|EHB21438.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404513546|gb|EKA27361.1| 30S ribosomal protein S1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431790745|emb|CCO67275.1| SSU ribosomal protein S1p [Yersinia enterocolitica IP 10393]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELAGGV 474
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV- 142
G + SE + D ++D +LN GDEV K +DR+ I+LS++ +E + + V
Sbjct: 476 GYLRASEATRDRVEDATLVLNVGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAIATVN 535
Query: 143 -IPQDGSVISDSSSMSSS 159
P++G+ SS+M+ +
Sbjct: 536 NKPEEGNF---SSAMAEA 550
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|387889807|ref|YP_006320105.1| 30S ribosomal protein [Escherichia blattae DSM 4481]
gi|414592526|ref|ZP_11442176.1| 30S ribosomal protein S1 [Escherichia blattae NBRC 105725]
gi|386924640|gb|AFJ47594.1| 30S ribosomal protein [Escherichia blattae DSM 4481]
gi|403196595|dbj|GAB79828.1| 30S ribosomal protein S1 [Escherichia blattae NBRC 105725]
Length = 556
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +L+ GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVRAKDEAE 526
Query: 135 LLETLEKVIPQDGSVISDSSS 155
+ + V Q+ S++ +
Sbjct: 527 EKDAIASVNKQEDGNFSNAMA 547
Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|384257335|ref|YP_005401269.1| 30S ribosomal protein S1 [Rahnella aquatilis HX2]
gi|380753311|gb|AFE57702.1| 30S ribosomal protein S1 [Rahnella aquatilis HX2]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP L + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLS--VNKKGTIVTGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELAGGV 474
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D I+D +L+ GDEV K +DR+ ++LS++ +E
Sbjct: 476 GYLRASEASRDRIEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVRAKDE 524
>gi|119946634|ref|YP_944314.1| 30S ribosomal protein S1 [Psychromonas ingrahamii 37]
gi|119865238|gb|ABM04715.1| SSU ribosomal protein S1P [Psychromonas ingrahamii 37]
Length = 556
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G V V+ +EE +++ K W ++SS + G+
Sbjct: 313 NKNIHPSKVVNLGDAAEVMVLDIDEERRRISLGLKQCKANPWEEFSSTHDKGQKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L DG ++ GLVH+S++SW+ + + +L+ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--NIDGLVHLSDISWEA-EGEKAVLDYKKGDEIEAVVLQVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+ DP L + + GS++ + S + TI G+
Sbjct: 427 ERISLGIKQISIDPFNNYLAE--NKKGSIVVGTISEVDAKGATITLAEGV 474
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GD V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDAAEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|378955695|ref|YP_005213182.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357206306|gb|AET54352.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNEPGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 6 SCKEP-QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED---I 61
S EP ++++ E KG I+ V+Q + E +++ K + +++ V + I
Sbjct: 397 SWNEPGEEAVREYKKG---DEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAI 453
Query: 62 FVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
G+ GA + L DG+ G + SE S D ++D +L+ GD+V K +
Sbjct: 454 VTGKVTAVDAKGATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGV 508
Query: 117 DREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSS 154
DR+ I+LS++ +E + + V Q+ + S+++
Sbjct: 509 DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|213579893|ref|ZP_03361719.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 443
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 90 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 143
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + + K P+
Sbjct: 144 GLKQLGEDPWV-AIAKRYPE 162
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 218 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 272
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 273 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 331
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 332 --ALNKKGAIVTGKVTAVDAKGATVELADGV 360
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 351 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 405
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 406 RAKDEADEKDAIATVNKQEDANFSNNA 432
>gi|448241462|ref|YP_007405515.1| 30S ribosomal subunit protein S1 [Serratia marcescens WW4]
gi|445211826|gb|AGE17496.1| 30S ribosomal subunit protein S1 [Serratia marcescens WW4]
gi|453066850|gb|EMF07774.1| 30S ribosomal protein S1 [Serratia marcescens VGH107]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--MNKKGAIVTGKVTAVDAKGATVELAGGV 474
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D I+D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 476 GYLRASEASRDRIEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|427702896|ref|YP_007046118.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427346064|gb|AFY28777.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 358
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 206 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFIDIG- 264
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP- 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 265 -----GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPEPG 319
Query: 135 -LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPL 167
+L +KV + + + M + EP+
Sbjct: 320 DMLSDPQKVFDKAEEMAARYKQMLLEQAEDNEPM 353
>gi|422301965|ref|ZP_16389329.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
gi|389788948|emb|CCI15121.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
Length = 330
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 265 KQLEPEP 271
>gi|238920345|ref|YP_002933860.1| 30S ribosomal protein S1, putative [Edwardsiella ictaluri 93-146]
gi|238869914|gb|ACR69625.1| 30S ribosomal protein S1, putative [Edwardsiella ictaluri 93-146]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYIS--LNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYISLNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDEAE 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V QD S+++
Sbjct: 527 EKDAMAAVNSQDDVNFSNNA 546
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|238757619|ref|ZP_04618803.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
gi|238704124|gb|EEP96657.1| 30S ribosomal protein S1 [Yersinia aldovae ATCC 35236]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +RD +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRD-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELAGGV 474
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV- 142
G + SE + D ++D +LN GDEV K +DR+ I+LS++ +E + + V
Sbjct: 476 GYLRASEATRDRVEDATLVLNVGDEVEAKYTGVDRKNRVISLSVRAKDEADEKDAIATVN 535
Query: 143 -IPQDGSVISDSSSMSSS 159
P++G+ SS+M+ +
Sbjct: 536 TKPEEGNF---SSAMAEA 550
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|213649373|ref|ZP_03379426.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 417
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 64 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 117
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + + K P+
Sbjct: 118 GLKQLGEDPWV-AIAKRYPE 136
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 192 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 246
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 247 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 305
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 306 --ALNKKGAIVTGKVTAVDAKGATVELADGV 334
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 325 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 379
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 380 RAKDEADEKDAIATVNKQEDANFSNNA 406
>gi|188534269|ref|YP_001908066.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
gi|188029311|emb|CAO97188.1| 30S ribosomal protein S1 [Erwinia tasmaniensis Et1/99]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--LNKKGAIVNGKVTAVDAKGATVELGDGV 474
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
G + SE S D ++D +LN GD+V K +DR+ ++LS++
Sbjct: 476 GYLRASEASLDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVR 520
>gi|429095516|ref|ZP_19157622.1| SSU ribosomal protein S1p [Cronobacter dublinensis 582]
gi|426281856|emb|CCJ83735.1| SSU ribosomal protein S1p [Cronobacter dublinensis 582]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVTGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|317491458|ref|ZP_07949894.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365837822|ref|ZP_09379179.1| ribosomal protein S1 [Hafnia alvei ATCC 51873]
gi|316921005|gb|EFV42328.1| ribosomal protein S1 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364561013|gb|EHM38927.1| ribosomal protein S1 [Hafnia alvei ATCC 51873]
Length = 559
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G +++ + + T+E G+
Sbjct: 446 S--MNKKGVIVTGKVTAVDAKGATVELADGV 474
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYISMNKKGVIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|307130806|ref|YP_003882822.1| 30S ribosomal protein S1 [Dickeya dadantii 3937]
gi|313104175|sp|P37985.2|RS1_DICD3 RecName: Full=30S ribosomal protein S1
gi|306528335|gb|ADM98265.1| 30S ribosomal subunit protein S1 [Dickeya dadantii 3937]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +++ GDE+ K +DR+ ++LSI+ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSIRAKDE 524
>gi|293396771|ref|ZP_06641047.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
gi|291421035|gb|EFE94288.1| 30S ribosomal protein S1 [Serratia odorifera DSM 4582]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--MNKKGTIVTGKVTAVDAKGATVELAGGV 474
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D ++D +LN GD+V K +DR+ ++LS++ +E
Sbjct: 476 GYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|238753503|ref|ZP_04614866.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
gi|238708456|gb|EEQ00811.1| 30S ribosomal protein S1 [Yersinia ruckeri ATCC 29473]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--MNKKGAIVTGKVTAVDAKGATVELAGGV 474
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE + D ++D +LN GDEV K +DR+ I+LS++ +E
Sbjct: 476 GYLRASEATRDRVEDATLVLNVGDEVEAKYTGVDRKNRVISLSVRAKDE 524
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|160903054|ref|YP_001568635.1| RNA-binding S1 domain-containing protein [Petrotoga mobilis SJ95]
gi|160360698|gb|ABX32312.1| RNA binding S1 domain protein [Petrotoga mobilis SJ95]
Length = 532
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 21/117 (17%)
Query: 29 KVIQANEEMKKLVFSEKDAVWNKYSSRVN-----------VEDIFVGRDYGAFIHLRFPD 77
KVI N K +V S KD K S N VEDI +++GAF+ L
Sbjct: 149 KVISKN--GKNIVVSIKDYAEEKISQTFNEYEEGMVIDGVVEDI---KNFGAFVRLN--- 200
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
HL GL+ SEVSWD I+D L G +V+ +IK+DREK RI+LS+K+L+E+P
Sbjct: 201 --DHLNGLIPASEVSWDEKISIKDYLKVGQKVKALIIKLDREKKRISLSLKRLKENP 255
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L GLVH +E+ W I D++N GD+V+VK++ ID+E +I LS KQ+ DP
Sbjct: 289 LEGLVHETEIFWGRKGRISDLVNVGDDVQVKILNIDKENKKINLSYKQVSGDP 341
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 13/132 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VK++ ++E KK+ S K W + +I G D GA I +
Sbjct: 313 GDDVQVKILNIDKENKKINLSYKQVSGDPWENIEEKYYEGNIVTGTVEKVLDNGAII--K 370
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G+ TG +HVSE+SWD + DI +LNE +++VK+IKID++ R+ LS+++ +E+P
Sbjct: 371 IDEGI---TGFLHVSELSWDFVDDISTVLNEKQKIKVKIIKIDKDNKRMRLSVRETKENP 427
Query: 135 LLETLEKVIPQD 146
+ +++ P D
Sbjct: 428 WKKASKEIKPGD 439
>gi|133872|sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
Full=CS1; Flags: Precursor
gi|18060|emb|CAA46927.1| ribosomal protein S1 [Spinacia oleracea]
gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1 [Spinacia oleracea]
Length = 411
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE +LV S + A+ + +++ + + G + YGAFI +
Sbjct: 229 IPLKFVEVDEEQSRLVMSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDI------G 281
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 282 GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 341
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 342 PKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 380
>gi|51595757|ref|YP_069948.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
gi|145599575|ref|YP_001163651.1| 30S ribosomal protein S1 [Yersinia pestis Pestoides F]
gi|153949259|ref|YP_001401545.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
gi|170024893|ref|YP_001721398.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
gi|186894835|ref|YP_001871947.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
gi|51589039|emb|CAH20657.1| 30S ribosomal protein S1 [Yersinia pseudotuberculosis IP 32953]
gi|145211271|gb|ABP40678.1| SSU ribosomal protein S1P [Yersinia pestis Pestoides F]
gi|152960754|gb|ABS48215.1| ribosomal protein S1 [Yersinia pseudotuberculosis IP 31758]
gi|169751427|gb|ACA68945.1| ribosomal protein S1 [Yersinia pseudotuberculosis YPIII]
gi|186697861|gb|ACC88490.1| ribosomal protein S1 [Yersinia pseudotuberculosis PB1/+]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELAGGV 474
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE + D ++D +LN GDEV K +DR+ I+LS++ +E
Sbjct: 476 GYLRASEATRDRVEDATLVLNVGDEVEAKYTGVDRKNRVISLSVRAKDE 524
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|428770655|ref|YP_007162445.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684934|gb|AFZ54401.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 346
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S + + L G + +K ++ +EE +LV S + A+ + + + V + +G + Y
Sbjct: 152 SAKDTKEDLVGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 212 GAFIDIG------GVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLST 265
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 266 KQLEPEP 272
>gi|422014951|ref|ZP_16361558.1| 30S ribosomal protein S1 [Providencia burhodogranariea DSM 19968]
gi|414100182|gb|EKT61803.1| 30S ribosomal protein S1 [Providencia burhodogranariea DSM 19968]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVTGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 446 --AATKKGAIVTGKVIAVDAKGATVELTLGV 474
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 471
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ G + SE S D ++D +L+ GD+V K +DR+ I LS++ +E
Sbjct: 472 LG-----VEGYLRASEASRDRVEDATLVLSVGDDVEAKYTGVDRKNRVINLSVRAKDEAD 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + S+++
Sbjct: 527 EKDAIATVNKQEETSFSNNA 546
>gi|379010841|ref|YP_005268653.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein IspH [Acetobacterium woodii DSM 1030]
gi|375301630|gb|AFA47764.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein IspH [Acetobacterium woodii DSM 1030]
Length = 753
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVED-----IFVGRDYGAFIHLR 74
G I KVI NEE KK+ S K D W+ + ++ NV+D I D+GAF +
Sbjct: 561 GQEIEAKVIAKNEEDKKIKLSVKALMDRPWDDFIAKYNVDDEVEVTITNILDFGAFAQI- 619
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ + GL+HVSE+S++ ++ + +LN GD + VK+I I+ EK +I+LS K EE P
Sbjct: 620 ----IPGVEGLIHVSEISYNRVESVAAVLNTGDVLTVKIIGINPEKEKISLSKKATEEAP 675
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++G F+ L DG+ G VH S+++W+ I + +DI+ +G E+ KVI + E +I L
Sbjct: 527 NFGIFVDL---DGI---DGFVHRSDLTWEKINEPKDIVEKGQEIEAKVIAKNEEDKKIKL 580
Query: 126 SIKQLEEDP 134
S+K L + P
Sbjct: 581 SVKALMDRP 589
>gi|317047558|ref|YP_004115206.1| 30S ribosomal protein S1 [Pantoea sp. At-9b]
gi|316949175|gb|ADU68650.1| ribosomal protein S1 [Pantoea sp. At-9b]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --TVNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|259908919|ref|YP_002649275.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
gi|385787907|ref|YP_005819016.1| 30S ribosomal protein S1 [Erwinia sp. Ejp617]
gi|387871827|ref|YP_005803202.1| 30S ribosomal protein S1 [Erwinia pyrifoliae DSM 12163]
gi|224964541|emb|CAX56051.1| 30S ribosomal protein S1 [Erwinia pyrifoliae Ep1/96]
gi|283478915|emb|CAY74831.1| 30S ribosomal protein S1 [Erwinia pyrifoliae DSM 12163]
gi|310767179|gb|ADP12129.1| 30S ribosomal protein S1 [Erwinia sp. Ejp617]
Length = 557
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--LNKKGAIVNGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASLDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSV 519
Query: 128 K---QLEEDPLLETL 139
+ Q +E + T+
Sbjct: 520 RAKDQADEKEAINTV 534
>gi|119492683|ref|ZP_01623862.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
gi|119453021|gb|EAW34192.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
Length = 414
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 11/114 (9%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 164 LPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI------G 217
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DEV+V +I +D ++ RI+LS KQLE +P
Sbjct: 218 GVSGLLHISEISHDHIDTPHSVFNVNDEVKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|443468983|ref|ZP_21059180.1| SSU ribosomal protein S1p [Pseudomonas pseudoalcaligenes KF707]
gi|442898255|gb|ELS25009.1| SSU ribosomal protein S1p [Pseudomonas pseudoalcaligenes KF707]
Length = 559
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVVARVTNLT 288
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V+V+ +EE +++ K W +SSR N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSRFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ + ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W +R V R DYG F L
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVVARVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI+L IKQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ G++ SE+S D ++D R++L EGDEV K+I IDR+ I+LS+K + D + ++
Sbjct: 473 EIEGVLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMK 532
Query: 141 KVIPQD 146
++ Q+
Sbjct: 533 ELRKQE 538
>gi|422022277|ref|ZP_16368785.1| 30S ribosomal protein S1 [Providencia sneebia DSM 19967]
gi|414096770|gb|EKT58426.1| 30S ribosomal protein S1 [Providencia sneebia DSM 19967]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVTGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 446 --AATKKGAIVTGKVIAVDAKGATVELTLGV 474
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|260597309|ref|YP_003209880.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
gi|429103806|ref|ZP_19165780.1| SSU ribosomal protein S1p [Cronobacter turicensis 564]
gi|260216486|emb|CBA29643.1| 30S ribosomal protein S1 [Cronobacter turicensis z3032]
gi|426290455|emb|CCJ91893.1| SSU ribosomal protein S1p [Cronobacter turicensis 564]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|395236087|ref|ZP_10414287.1| 30S ribosomal protein S1 [Enterobacter sp. Ag1]
gi|394729393|gb|EJF29389.1| 30S ribosomal protein S1 [Enterobacter sp. Ag1]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV--ALNKKGTIVTGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGTIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|425438866|ref|ZP_18819204.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|425445803|ref|ZP_18825823.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|425454554|ref|ZP_18834284.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
gi|389716744|emb|CCH99046.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|389734101|emb|CCI02187.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|389804745|emb|CCI16018.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
Length = 330
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 265 KQLEPEP 271
>gi|387885873|ref|YP_006316172.1| 30S ribosomal protein S1 [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386870689|gb|AFJ42696.1| 30S ribosomal protein S1 [Francisella noatunensis subsp. orientalis
str. Toba 04]
Length = 556
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 18/123 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEK-----------DAVWNKYSSRVNVEDIFVG-RDYGAFIHL 73
I +KV++ + + +V S K DA+ K S ++ I D+GAFI L
Sbjct: 152 IELKVVKIDTKRNNIVVSRKAVIEENNSGDRDAMLEKISESSVLQGIVKNITDFGAFIDL 211
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L IKQL ED
Sbjct: 212 GGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISLGIKQLGED 265
Query: 134 PLL 136
P L
Sbjct: 266 PWL 268
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DI 61
P K+I E+ KG + ++ N +++++ S K + + + +N+ ++
Sbjct: 401 PAKAIKELKKG---DDVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVKGNV 457
Query: 62 FVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
+D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKLQDNGAVVML---DADNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
I LSIK ++ED
Sbjct: 515 SIALSIKAVDED 526
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
WN++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WNEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GD+V ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDDVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V++++ + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELEADNHRISLGIKQCRAN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWNEFEKNYKPGD 365
>gi|365848847|ref|ZP_09389318.1| ribosomal protein S1 [Yokenella regensburgei ATCC 43003]
gi|364569491|gb|EHM47113.1| ribosomal protein S1 [Yokenella regensburgei ATCC 43003]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVNGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|385331107|ref|YP_005885058.1| ribosomal S1 synthesis/modification protein [Marinobacter adhaerens
HP15]
gi|311694257|gb|ADP97130.1| ribosomal S1 synthesis/modification protein [Marinobacter adhaerens
HP15]
Length = 564
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEISVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP ++
Sbjct: 258 GLKQLGEDPWVD 269
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K V W +SS N D G+
Sbjct: 313 NKNIHPSKVVQVGDEVDVMILDIDEERRRISLGIKQCVSNPWEDFSSNFNKGDRISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDEV ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRE-YKKGDEVETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQLE DP E ++ + GS++ + S + + TI
Sbjct: 427 ERISLGIKQLESDPFAEFVQ--LNDKGSIVKGTVSAVDAKAATI 468
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVDVMILDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCVSNP 353
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ ++ SE+S D ++D R+ L EG+EV K+I IDR+ I LS+K + + + LE
Sbjct: 473 EVEAVLKASEISRDRVEDARNALKEGEEVEAKIISIDRKNRIINLSVKSKDVEDDKQALE 532
Query: 141 KVIPQDGSVISDSSSMS 157
V + S ++++
Sbjct: 533 NVRTKTAETSSGATTIG 549
>gi|254432396|ref|ZP_05046099.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
gi|197626849|gb|EDY39408.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
Length = 351
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 199 LVADFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFIDIG- 257
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP- 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 258 -----GVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPEPG 312
Query: 135 -LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPL 167
+L +KV + + + M + EP+
Sbjct: 313 DMLTDPQKVFDKAEEMAARYKQMLLEQAEDNEPM 346
>gi|85058971|ref|YP_454673.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
gi|84779491|dbj|BAE74268.1| 30S ribosomal protein S1 [Sodalis glossinidius str. 'morsitans']
Length = 558
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAEIHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDSERERISLGVKQLVEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + T+E G+
Sbjct: 446 S--LNKKGAIVTGKVTAVDVKGATVELAGGV 474
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|398791228|ref|ZP_10551973.1| ribosomal protein S1 [Pantoea sp. YR343]
gi|398215282|gb|EJN01845.1| ribosomal protein S1 [Pantoea sp. YR343]
Length = 566
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 212 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 265
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 266 GLKQLGEDP 274
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 340 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 394
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 395 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 453
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 454 --TLNKKGAIVTGKVTAVDAKGATVELADGV 482
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 246 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 306 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 359
Query: 133 DP 134
+P
Sbjct: 360 NP 361
>gi|354597947|ref|ZP_09015964.1| ribosomal protein S1 [Brenneria sp. EniD312]
gi|353675882|gb|EHD21915.1| ribosomal protein S1 [Brenneria sp. EniD312]
Length = 569
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 458 S--VNKKGAIVTGKVTAVDAKGATVELADGV 486
Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 424 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 482
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +LN GD V K +DR+ ++LS++ +E
Sbjct: 483 -ADGV---EGYLRASEASRDRIEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAKDE 536
Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|384228306|ref|YP_005620041.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539239|gb|AEO08106.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 559
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE++VK++K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPNEIVNVGDEIQVKILKFDRERTRVSL 257
Query: 126 SIKQLEEDPLL 136
+KQL EDP +
Sbjct: 258 GLKQLGEDPWI 268
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G FI L + GLVH+S++SW + ++ + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWTIPGEEAVKKYKKNDEISAVVLQVDAERERIS 430
Query: 125 LSIKQLEEDPL 135
L IKQLE+DP
Sbjct: 431 LGIKQLEDDPF 441
>gi|416301549|ref|ZP_11653053.1| SSU ribosomal protein S1p [Shigella flexneri CDC 796-83]
gi|320184257|gb|EFW59070.1| SSU ribosomal protein S1p [Shigella flexneri CDC 796-83]
Length = 560
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|162420786|ref|YP_001606429.1| 30S ribosomal protein S1 [Yersinia pestis Angola]
gi|162353601|gb|ABX87549.1| ribosomal protein S1 [Yersinia pestis Angola]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKNDCVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELAGGV 474
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|398798463|ref|ZP_10557762.1| ribosomal protein S1 [Pantoea sp. GM01]
gi|398100370|gb|EJL90609.1| ribosomal protein S1 [Pantoea sp. GM01]
Length = 566
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 212 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 265
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 266 GLKQLGEDP 274
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 340 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 394
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 395 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 453
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 454 --TLNKKGAIVTGKVTAVDAKGATVELADGV 482
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 246 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 306 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 359
Query: 133 DP 134
+P
Sbjct: 360 NP 361
>gi|383814714|ref|ZP_09970133.1| 30S ribosomal protein S1 [Serratia sp. M24T3]
gi|383296491|gb|EIC84806.1| 30S ribosomal protein S1 [Serratia sp. M24T3]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGTIVTGKVTAVDAKGATVELAGGV 474
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D I+D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 476 GYLRASEASRDRIEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|322832232|ref|YP_004212259.1| 30S ribosomal protein S1 [Rahnella sp. Y9602]
gi|321167433|gb|ADW73132.1| ribosomal protein S1 [Rahnella sp. Y9602]
Length = 569
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 362 KNNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 416
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP L + + G++++ +
Sbjct: 417 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLS--VNKKGTIVTGKVTAV 473
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 474 DAKGATVELAGGV 486
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D I+D +L+ GDEV K +DR+ ++LS++ +E
Sbjct: 488 GYLRASEASRDRIEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVRAKDE 536
>gi|386744749|ref|YP_006217928.1| 30S ribosomal protein S1 [Providencia stuartii MRSN 2154]
gi|384481442|gb|AFH95237.1| 30S ribosomal protein S1 [Providencia stuartii MRSN 2154]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 446 --AATKKGAIVTGKVIAVDAKGATVELTLGV 474
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 471
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ G + SE S D ++D +L GD+V K +DR+ I LS++ +E
Sbjct: 472 LG-----VEGYLRASEASRDRVEDATQVLKVGDDVEAKYTGVDRKNRVINLSVRAKDE 524
>gi|226330706|ref|ZP_03806224.1| hypothetical protein PROPEN_04626 [Proteus penneri ATCC 35198]
gi|225201501|gb|EEG83855.1| ribosomal protein S1 [Proteus penneri ATCC 35198]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLSEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G+++S + + T+E G+
Sbjct: 446 SA--HKKGAIVSGKVTAVDAKGATVELADGV 474
Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|218548427|ref|YP_002382218.1| 30S ribosomal protein S1 [Escherichia fergusonii ATCC 35469]
gi|422806033|ref|ZP_16854465.1| ribosomal protein S1 [Escherichia fergusonii B253]
gi|424815830|ref|ZP_18240981.1| 30S ribosomal protein S1 [Escherichia fergusonii ECD227]
gi|218355968|emb|CAQ88584.1| 30S ribosomal subunit protein S1 [Escherichia fergusonii ATCC
35469]
gi|324113758|gb|EGC07733.1| ribosomal protein S1 [Escherichia fergusonii B253]
gi|325496850|gb|EGC94709.1| 30S ribosomal protein S1 [Escherichia fergusonii ECD227]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|167626886|ref|YP_001677386.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596887|gb|ABZ86885.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 561
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 209 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIYVKVIKFDKEKQRISL 262
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 263 GIKQLGEDPWL 273
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DI 61
P K+I E+ KG + ++ N +++++ S K + + + +N+ ++
Sbjct: 406 PAKAIKELKKG---DDVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVKGNV 462
Query: 62 FVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
+D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 463 TKVQDNGAVVML---DADNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 519
Query: 122 RITLSIKQLEED 133
I LSIK ++ED
Sbjct: 520 SIALSIKAVDED 531
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
WN++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 359 WNEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 413
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GD+V ++ ++ + RI LS+KQL EDP
Sbjct: 414 KKGDDVEAVLVSVNTDLERIALSMKQLSEDPF 445
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 243 GQEIYVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 302
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 303 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRAN 357
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 358 PWNEFEKNYKPGD 370
>gi|156934599|ref|YP_001438515.1| 30S ribosomal protein S1 [Cronobacter sakazakii ATCC BAA-894]
gi|389841530|ref|YP_006343614.1| 30S ribosomal protein S1 [Cronobacter sakazakii ES15]
gi|417791613|ref|ZP_12439053.1| 30S ribosomal protein S1 [Cronobacter sakazakii E899]
gi|424799022|ref|ZP_18224564.1| SSU ribosomal protein S1p [Cronobacter sakazakii 696]
gi|429108180|ref|ZP_19170049.1| SSU ribosomal protein S1p [Cronobacter malonaticus 681]
gi|429121370|ref|ZP_19182006.1| SSU ribosomal protein S1p [Cronobacter sakazakii 680]
gi|449308786|ref|YP_007441142.1| 30S ribosomal protein S1 [Cronobacter sakazakii SP291]
gi|156532853|gb|ABU77679.1| hypothetical protein ESA_02433 [Cronobacter sakazakii ATCC BAA-894]
gi|333954292|gb|EGL72154.1| 30S ribosomal protein S1 [Cronobacter sakazakii E899]
gi|387852006|gb|AFK00104.1| 30S ribosomal protein S1 [Cronobacter sakazakii ES15]
gi|423234743|emb|CCK06434.1| SSU ribosomal protein S1p [Cronobacter sakazakii 696]
gi|426294903|emb|CCJ96162.1| SSU ribosomal protein S1p [Cronobacter malonaticus 681]
gi|426324214|emb|CCK12743.1| SSU ribosomal protein S1p [Cronobacter sakazakii 680]
gi|449098819|gb|AGE86853.1| 30S ribosomal protein S1 [Cronobacter sakazakii SP291]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV--ALNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|429081906|ref|ZP_19145001.1| SSU ribosomal protein S1p [Cronobacter condimenti 1330]
gi|426549472|emb|CCJ71042.1| SSU ribosomal protein S1p [Cronobacter condimenti 1330]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV--ALNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAKDE 524
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|54778754|gb|AAV39588.1| ribosomal protein S1 [synthetic construct]
Length = 584
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 228 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 281
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 282 GLKQLGEDP 290
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 356 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 410
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 411 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 469
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 470 --ALNKKGAIVTGKVTAVDAKGATVELADGV 498
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 489 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 543
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 544 RAKDEADEKDAIATVNKQEDANFSNNA 570
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 262 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 321
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 322 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 375
Query: 133 DP 134
+P
Sbjct: 376 NP 377
>gi|419978717|ref|ZP_14494012.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419989558|ref|ZP_14504533.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419995022|ref|ZP_14509830.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420019074|ref|ZP_14533269.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397351160|gb|EJJ44245.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397368795|gb|EJJ61400.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397369057|gb|EJJ61659.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397389735|gb|EJJ81668.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G+++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV--ALNKKGAIVVGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I VG+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVVGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +L+ GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVRAKDEAE 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + S+++
Sbjct: 527 EKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|271500810|ref|YP_003333835.1| 30S ribosomal protein S1 [Dickeya dadantii Ech586]
gi|270344365|gb|ACZ77130.1| ribosomal protein S1 [Dickeya dadantii Ech586]
Length = 569
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 458 S--VNKKGAIVTGKVTAVDAKGATVELADGV 486
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 424 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 482
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +LN GDE+ K +DR+ ++LSI+ +E
Sbjct: 483 -ADGV---EGYLRASEASRDRIEDATLVLNVGDEIEAKYTGVDRKNRVVSLSIRAKDE 536
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|152969495|ref|YP_001334604.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206580559|ref|YP_002239440.1| 30S ribosomal protein S1 [Klebsiella pneumoniae 342]
gi|238893967|ref|YP_002918701.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262040990|ref|ZP_06014212.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288936291|ref|YP_003440350.1| 30S ribosomal protein S1 [Klebsiella variicola At-22]
gi|290510654|ref|ZP_06550024.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
gi|330014030|ref|ZP_08307846.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
gi|365139372|ref|ZP_09345780.1| 30S ribosomal protein S1 [Klebsiella sp. 4_1_44FAA]
gi|378977977|ref|YP_005226118.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402781546|ref|YP_006637092.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|419762602|ref|ZP_14288849.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|419971911|ref|ZP_14487341.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419985490|ref|ZP_14500630.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|420003493|ref|ZP_14518138.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420009143|ref|ZP_14523628.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420016878|ref|ZP_14531164.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420025116|ref|ZP_14539126.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420032226|ref|ZP_14546042.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420039559|ref|ZP_14553191.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420043647|ref|ZP_14557133.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420050029|ref|ZP_14563332.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420056927|ref|ZP_14570076.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420062157|ref|ZP_14575135.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420068151|ref|ZP_14580935.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420073982|ref|ZP_14586600.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420077587|ref|ZP_14590051.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420082145|ref|ZP_14594446.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421909063|ref|ZP_16338885.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421916417|ref|ZP_16345993.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424934218|ref|ZP_18352590.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425077408|ref|ZP_18480511.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425080751|ref|ZP_18483848.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|425088041|ref|ZP_18491134.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425090813|ref|ZP_18493898.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|428150894|ref|ZP_18998650.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428933585|ref|ZP_19007134.1| 30S ribosomal protein S1 [Klebsiella pneumoniae JHCK1]
gi|428941941|ref|ZP_19014964.1| 30S ribosomal protein S1 [Klebsiella pneumoniae VA360]
gi|449049532|ref|ZP_21731468.1| 30S ribosomal protein S1 [Klebsiella pneumoniae hvKP1]
gi|150954344|gb|ABR76374.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206569617|gb|ACI11393.1| ribosomal protein S1 [Klebsiella pneumoniae 342]
gi|238546283|dbj|BAH62634.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259041684|gb|EEW42733.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288891000|gb|ADC59318.1| ribosomal protein S1 [Klebsiella variicola At-22]
gi|289777370|gb|EFD85368.1| 30S ribosomal protein S1 [Klebsiella sp. 1_1_55]
gi|328533287|gb|EGF60039.1| ribosomal protein S1 [Klebsiella sp. MS 92-3]
gi|363654341|gb|EHL93251.1| 30S ribosomal protein S1 [Klebsiella sp. 4_1_44FAA]
gi|364517388|gb|AEW60516.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397351304|gb|EJJ44388.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397352849|gb|EJJ45927.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397369313|gb|EJJ61914.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397374358|gb|EJJ66700.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397381923|gb|EJJ74088.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397397673|gb|EJJ89345.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397397993|gb|EJJ89659.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397403004|gb|EJJ94597.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397411956|gb|EJK03200.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397413453|gb|EJK04666.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397420037|gb|EJK11138.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397426938|gb|EJK17733.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397428884|gb|EJK19612.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397437077|gb|EJK27653.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397445776|gb|EJK36009.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397452507|gb|EJK42576.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|397744783|gb|EJK91994.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|402542423|gb|AFQ66572.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|405593117|gb|EKB66569.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405602173|gb|EKB75315.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405605522|gb|EKB78552.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|405613549|gb|EKB86280.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|407808405|gb|EKF79656.1| 30S ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410116907|emb|CCM81510.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410121210|emb|CCM88618.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426299596|gb|EKV61925.1| 30S ribosomal protein S1 [Klebsiella pneumoniae VA360]
gi|426304956|gb|EKV67088.1| 30S ribosomal protein S1 [Klebsiella pneumoniae JHCK1]
gi|427539163|emb|CCM94788.1| SSU ribosomal protein S1p [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|448876758|gb|EMB11738.1| 30S ribosomal protein S1 [Klebsiella pneumoniae hvKP1]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G+++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV--ALNKKGAIVVGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I VG+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVVGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +L+ GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVRAKDEAE 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + S+++
Sbjct: 527 EKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|42900|emb|CAA23644.1| S1 ribosomal protein [Escherichia coli]
Length = 556
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 203 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 256
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 257 GLKQLGEDP 265
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 331 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 385
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 386 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 444
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G +++ + + T+E G+
Sbjct: 445 --ALNKKGVIVTGKVTAVDAKGATVELADGV 473
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 464 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 518
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 519 RAKDEADEKDAIATVNKQEDANFSNNA 545
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 237 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 297 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 350
Query: 133 DP 134
+P
Sbjct: 351 NP 352
>gi|429090211|ref|ZP_19152943.1| SSU ribosomal protein S1p [Cronobacter universalis NCTC 9529]
gi|426510014|emb|CCK18055.1| SSU ribosomal protein S1p [Cronobacter universalis NCTC 9529]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|381405099|ref|ZP_09929783.1| 30S ribosomal protein S1 [Pantoea sp. Sc1]
gi|380738298|gb|EIB99361.1| 30S ribosomal protein S1 [Pantoea sp. Sc1]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --TLNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSV 519
Query: 128 K 128
+
Sbjct: 520 R 520
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|375259993|ref|YP_005019163.1| 30S ribosomal protein S1 [Klebsiella oxytoca KCTC 1686]
gi|397657067|ref|YP_006497769.1| 30S ribosomal protein S1 [Klebsiella oxytoca E718]
gi|421727800|ref|ZP_16166958.1| 30S ribosomal protein S1 [Klebsiella oxytoca M5al]
gi|423102258|ref|ZP_17089960.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5242]
gi|423107606|ref|ZP_17095301.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5243]
gi|423113549|ref|ZP_17101240.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5245]
gi|423128360|ref|ZP_17116039.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5250]
gi|365909471|gb|AEX04924.1| 30S ribosomal protein S1 [Klebsiella oxytoca KCTC 1686]
gi|376387818|gb|EHT00521.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5243]
gi|376388235|gb|EHT00935.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5245]
gi|376389841|gb|EHT02530.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5242]
gi|376393716|gb|EHT06372.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5250]
gi|394345575|gb|AFN31696.1| SSU ribosomal protein S1p [Klebsiella oxytoca E718]
gi|410371283|gb|EKP26006.1| 30S ribosomal protein S1 [Klebsiella oxytoca M5al]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|345298588|ref|YP_004827946.1| 30S ribosomal protein S1 [Enterobacter asburiae LF7a]
gi|345092525|gb|AEN64161.1| ribosomal protein S1 [Enterobacter asburiae LF7a]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|386034122|ref|YP_005954035.1| 30S ribosomal protein S1 [Klebsiella pneumoniae KCTC 2242]
gi|424829917|ref|ZP_18254645.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|339761250|gb|AEJ97470.1| 30S ribosomal protein S1 [Klebsiella pneumoniae KCTC 2242]
gi|414707342|emb|CCN29046.1| ribosomal protein S1 [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G+++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV--ALNKKGAIVVGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I VG+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVVGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDEAE 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + S+++
Sbjct: 527 EKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|188025797|ref|ZP_02959855.2| hypothetical protein PROSTU_01754 [Providencia stuartii ATCC 25827]
gi|188020538|gb|EDU58578.1| ribosomal protein S1 [Providencia stuartii ATCC 25827]
Length = 569
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 344 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + T+E G+
Sbjct: 458 --AATKKGAIVTGKVIAVDAKGATVELTLGV 486
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 424 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLAATKKGAIVTGKVIAVDAKGATVELT 483
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ G + SE S D ++D +L GD+V K +DR+ I LS++ +E
Sbjct: 484 LG-----VEGYLRASEASRDRVEDATQVLKVGDDVEAKYTGVDRKNRVINLSVRAKDE 536
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|146311087|ref|YP_001176161.1| 30S ribosomal protein S1 [Enterobacter sp. 638]
gi|145317963|gb|ABP60110.1| SSU ribosomal protein S1P [Enterobacter sp. 638]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW+ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--AVNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDAGFSNNA 546
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|115315499|ref|YP_764222.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
OSU18]
gi|169656779|ref|YP_001429450.2| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|115130398|gb|ABI83585.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica
OSU18]
gi|164551847|gb|ABU62494.2| ribosomal protein S1 [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 574
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 222 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 275
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 276 GIKQLGEDPWL 286
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 419 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 475
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 476 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 532
Query: 122 RITLSIKQLEED 133
ITLSIK ++ED
Sbjct: 533 SITLSIKAVDED 544
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 372 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 426
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 427 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 458
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 256 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVCAKLMGTVTNITDYGCFVKLK 315
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 316 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 370
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 371 PWSEFEKNYKPGD 383
>gi|42837|emb|CAA23630.1| unnamed protein product [Escherichia coli]
Length = 556
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 203 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 256
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 257 GLKQLGEDP 265
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 331 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 385
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 386 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 444
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 445 --ALNKKGAIVTGKVTAVDAKGATVELADGV 473
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 464 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 518
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 519 RAKDEADEKDAIATVNKQEDANFSNNA 545
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 237 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 297 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 350
Query: 133 DP 134
+P
Sbjct: 351 NP 352
>gi|420369142|ref|ZP_14869867.1| ribosomal protein S1 [Shigella flexneri 1235-66]
gi|391321468|gb|EIQ78191.1| ribosomal protein S1 [Shigella flexneri 1235-66]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|390442071|ref|ZP_10230090.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
gi|389834605|emb|CCI34216.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
Length = 358
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 179 STREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVERKMNGLAVGQVVIGSVRGIKPY 238
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 239 GAFIDIG------GVSGLLHISEISHDHIDTPHTVFNVNDELKVMIIDLDAERGRISLST 292
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 293 KQLEPEP 299
>gi|337754169|ref|YP_004646680.1| 30S ribosomal protein S1 [Francisella sp. TX077308]
gi|336445774|gb|AEI35080.1| SSU ribosomal protein S1p [Francisella sp. TX077308]
Length = 556
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DI 61
P K+I E+ KG + ++ N +++++ S K + + + +N+ ++
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVKGNV 457
Query: 62 FVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
+D GA + L D ++ G + +SE+S + +++ D L+EG EV ++I ID +K
Sbjct: 458 TKLQDNGAVVML---DADNNIDGFIRISEISAEHTKNVSDELSEGQEVEARIINIDTKKR 514
Query: 122 RITLSIKQLEED 133
I LSIK ++ED
Sbjct: 515 SIALSIKAVDED 526
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
WN++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WNEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRAN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWNEFEKNYKPGD 365
>gi|311280175|ref|YP_003942406.1| 30S ribosomal protein S1 [Enterobacter cloacae SCF1]
gi|308749370|gb|ADO49122.1| ribosomal protein S1 [Enterobacter cloacae SCF1]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVNGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|304397071|ref|ZP_07378950.1| ribosomal protein S1 [Pantoea sp. aB]
gi|372276214|ref|ZP_09512250.1| 30S ribosomal protein S1 [Pantoea sp. SL1_M5]
gi|390433352|ref|ZP_10221890.1| 30S ribosomal protein S1 [Pantoea agglomerans IG1]
gi|440757654|ref|ZP_20936837.1| SSU ribosomal protein S1p [Pantoea agglomerans 299R]
gi|304355220|gb|EFM19588.1| ribosomal protein S1 [Pantoea sp. aB]
gi|436428643|gb|ELP26297.1| SSU ribosomal protein S1p [Pantoea agglomerans 299R]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --TLNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSV 519
Query: 128 K 128
+
Sbjct: 520 R 520
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|261821283|ref|YP_003259389.1| 30S ribosomal protein S1 [Pectobacterium wasabiae WPP163]
gi|261605296|gb|ACX87782.1| ribosomal protein S1 [Pectobacterium wasabiae WPP163]
Length = 565
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 212 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 265
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 266 GLKQLGEDP 274
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 340 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 394
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 395 IDGLVHLSDISWNVVGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 453
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 454 S--VNKKGAIVTGKVTAVDAKGATVELADGV 482
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 420 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 478
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +LN GD V K +DR+ ++LS++ +E
Sbjct: 479 -ADGV---EGYLRASEASRDRIEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAKDE 532
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 246 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 306 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 359
Query: 133 DP 134
+P
Sbjct: 360 NP 361
>gi|253688122|ref|YP_003017312.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754700|gb|ACT12776.1| ribosomal protein S1 [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D ++D +LN GD V K +DR+ ++LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAKDE 524
>gi|227111988|ref|ZP_03825644.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328155|ref|ZP_03832179.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-FKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|237730874|ref|ZP_04561355.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
gi|283833798|ref|ZP_06353539.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
gi|365105658|ref|ZP_09334807.1| 30S ribosomal protein S1 [Citrobacter freundii 4_7_47CFAA]
gi|395227593|ref|ZP_10405919.1| 30S ribosomal subunit protein S1 [Citrobacter sp. A1]
gi|421844374|ref|ZP_16277532.1| 30S ribosomal protein S1 [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|424728703|ref|ZP_18157308.1| 30s ribosomal protein s1 [Citrobacter sp. L17]
gi|226906413|gb|EEH92331.1| 30S ribosomal subunit protein S1 [Citrobacter sp. 30_2]
gi|291070463|gb|EFE08572.1| ribosomal protein S1 [Citrobacter youngae ATCC 29220]
gi|363643172|gb|EHL82496.1| 30S ribosomal protein S1 [Citrobacter freundii 4_7_47CFAA]
gi|394718921|gb|EJF24542.1| 30S ribosomal subunit protein S1 [Citrobacter sp. A1]
gi|411774529|gb|EKS58019.1| 30S ribosomal protein S1 [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|422896574|gb|EKU36356.1| 30s ribosomal protein s1 [Citrobacter sp. L17]
gi|455642411|gb|EMF21577.1| 30S ribosomal protein S1 [Citrobacter freundii GTC 09479]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|261339245|ref|ZP_05967103.1| hypothetical protein ENTCAN_05481 [Enterobacter cancerogenus ATCC
35316]
gi|288319102|gb|EFC58040.1| ribosomal protein S1 [Enterobacter cancerogenus ATCC 35316]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-FKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|440288273|ref|YP_007341038.1| SSU ribosomal protein S1P [Enterobacteriaceae bacterium strain FGI
57]
gi|440047795|gb|AGB78853.1| SSU ribosomal protein S1P [Enterobacteriaceae bacterium strain FGI
57]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|403058181|ref|YP_006646398.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402805507|gb|AFR03145.1| 30S ribosomal protein S1 [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 569
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVAGEEAVRE-FKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 458 S--VNKKGAIVTGKVTAVDAKGATVELADGV 486
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|423119519|ref|ZP_17107203.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5246]
gi|376398173|gb|EHT10800.1| 30S ribosomal protein S1 [Klebsiella oxytoca 10-5246]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|308186257|ref|YP_003930388.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
gi|308056767|gb|ADO08939.1| 30S ribosomal protein S1 [Pantoea vagans C9-1]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --TLNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +LN GD+V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASLDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSV 519
Query: 128 K 128
+
Sbjct: 520 R 520
Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|300937745|ref|ZP_07152546.1| ribosomal protein S1 [Escherichia coli MS 21-1]
gi|300457252|gb|EFK20745.1| ribosomal protein S1 [Escherichia coli MS 21-1]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|385812293|ref|YP_005848684.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
Length = 410
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 21/146 (14%)
Query: 29 KVIQA-NEEMKKLVFSE---KDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTG 84
+++QA +EE K +FSE D V K + N +GAFI L DGL
Sbjct: 181 EIVQAQHEEAAKKIFSELVAGDVVEGKVARMTN---------FGAFIDLGGVDGL----- 226
Query: 85 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 144
VHVSE+S+D + D+L G EV+VKV+ +D E+ RI+LSIKQ P + EK
Sbjct: 227 -VHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAV 285
Query: 145 QDGSVISDSSSMSSSNSNTIEPLPGL 170
G+V++ + +S +E PG+
Sbjct: 286 --GTVLTGTVKRLTSFGAFVEVFPGV 309
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E +++ S K + W+ + V + G +GAF+ +
Sbjct: 246 VGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGTVLTGTVKRLTSFGAFVEV 305
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I D+L G EV+VKV+ +D E+ R+ LSIK LEE
Sbjct: 306 -FPG----VEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKALEEA 360
Query: 134 P 134
P
Sbjct: 361 P 361
>gi|292487830|ref|YP_003530705.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
gi|292899057|ref|YP_003538426.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
gi|428784766|ref|ZP_19002257.1| 30S ribosomal protein S1 [Erwinia amylovora ACW56400]
gi|291198905|emb|CBJ46015.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC 49946]
gi|291553252|emb|CBA20297.1| 30S ribosomal protein S1 [Erwinia amylovora CFBP1430]
gi|312171951|emb|CBX80208.1| 30S ribosomal protein S1 [Erwinia amylovora ATCC BAA-2158]
gi|426276328|gb|EKV54055.1| 30S ribosomal protein S1 [Erwinia amylovora ACW56400]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIMVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--LNKKGAIVNGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASLDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSV 519
Query: 128 K---QLEEDPLLETL 139
+ Q +E + T+
Sbjct: 520 RAKDQADEKEAINTV 534
>gi|260654143|ref|ZP_05859633.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
gi|260631128|gb|EEX49322.1| ribosomal protein S1 [Jonquetella anthropi E3_33 E1]
Length = 500
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 18/121 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
V +++ ++ ++LV S + +A ++ V V D+ G +GAF+++
Sbjct: 158 FEVCLLEKDKRKRRLVLSRRVLLDKDLNARREEFYQNVKVGDVVDGTVSSLTSFGAFVNV 217
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+SE+SW I+D+L +GDEV+VKVI IDRE ++I+LS++Q++ D
Sbjct: 218 ------GPIDGLVHLSEISWQRSAKIKDLLKKGDEVKVKVIGIDRENNKISLSMRQVQGD 271
Query: 134 P 134
P
Sbjct: 272 P 272
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-------DAVWNKYS-SRVNVEDIFVGRDYGAFIHLR 74
G + VKVI + E K+ S + D V +++ + + D+GAF+ +
Sbjct: 244 GDEVKVKVIGIDRENNKISLSMRQVQGDPWDTVTERWTKGQTTTGVVTNVTDFGAFVEVE 303
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+ ++SW I+ RD++ +G E+ V V+ ++ ++ R++L KQL DP
Sbjct: 304 -----PGIEGLVHIGDLSWARIKHPRDVIRKGQEIEVVVLDVEADRRRMSLGYKQL-NDP 357
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 31 IQANEEMKKLVFSEKDAVWNKYSSR-VNVEDIFVG----RDYGAFIHLRFPDGLYHLTGL 85
++A+ L + + + WN +R +D+ V D+GAF+ L + GL
Sbjct: 340 VEADRRRMSLGYKQLNDPWNGIENRYAKGQDVQVKVVRLADFGAFVELE-----EGVEGL 394
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+H+S++S + +D+L EG EV ++++++ + RI LS++ LE
Sbjct: 395 IHISQLSSKRVDKPKDVLTEGQEVTARILEVNPTERRIRLSLRALE 440
>gi|242239665|ref|YP_002987846.1| 30S ribosomal protein S1 [Dickeya dadantii Ech703]
gi|242131722|gb|ACS86024.1| ribosomal protein S1 [Dickeya dadantii Ech703]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +LN GDE+ K +DR+ ++LSI+ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRIEDATLVLNVGDEIEAKYTGVDRKNRVVSLSIRAKDE 524
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|197284609|ref|YP_002150481.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
gi|227356792|ref|ZP_03841177.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
gi|425067501|ref|ZP_18470617.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW6]
gi|425073062|ref|ZP_18476168.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW4]
gi|194682096|emb|CAR41670.1| 30S ribosomal protein S1 [Proteus mirabilis HI4320]
gi|227163082|gb|EEI48017.1| 30S ribosomal protein S1 [Proteus mirabilis ATCC 29906]
gi|404595947|gb|EKA96478.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW4]
gi|404601332|gb|EKB01745.1| 30S ribosomal protein S1 [Proteus mirabilis WGLW6]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLSEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G+++S + + T+E G+
Sbjct: 446 SA--HKKGAIVSGKVTAVDAKGATVELADGV 474
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD V K +DR+ I LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDAVEAKYTGVDRKNRVINLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
>gi|22126658|ref|NP_670081.1| 30S ribosomal protein S1 [Yersinia pestis KIM10+]
gi|45441028|ref|NP_992567.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
91001]
gi|108806680|ref|YP_650596.1| 30S ribosomal protein S1 [Yersinia pestis Antiqua]
gi|108812746|ref|YP_648513.1| 30S ribosomal protein S1 [Yersinia pestis Nepal516]
gi|149366649|ref|ZP_01888683.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
gi|165924533|ref|ZP_02220365.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165938978|ref|ZP_02227531.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
gi|166009737|ref|ZP_02230635.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211469|ref|ZP_02237504.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399783|ref|ZP_02305301.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419527|ref|ZP_02311280.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167424191|ref|ZP_02315944.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|218928540|ref|YP_002346415.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
gi|229841362|ref|ZP_04461521.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229843467|ref|ZP_04463613.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229895840|ref|ZP_04511010.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
gi|229903154|ref|ZP_04518267.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
gi|270486949|ref|ZP_06204023.1| ribosomal protein S1 [Yersinia pestis KIM D27]
gi|294503382|ref|YP_003567444.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
gi|384121827|ref|YP_005504447.1| 30S ribosomal protein S1 [Yersinia pestis D106004]
gi|384125377|ref|YP_005507991.1| 30S ribosomal protein S1 [Yersinia pestis D182038]
gi|384140749|ref|YP_005523451.1| 30S ribosomal protein S1 [Yersinia pestis A1122]
gi|384415245|ref|YP_005624607.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420546098|ref|ZP_15044133.1| ribosomal protein S1 [Yersinia pestis PY-01]
gi|420551402|ref|ZP_15048882.1| ribosomal protein S1 [Yersinia pestis PY-02]
gi|420556944|ref|ZP_15053771.1| ribosomal protein S1 [Yersinia pestis PY-03]
gi|420562496|ref|ZP_15058652.1| ribosomal protein S1 [Yersinia pestis PY-04]
gi|420567512|ref|ZP_15063192.1| ribosomal protein S1 [Yersinia pestis PY-05]
gi|420573164|ref|ZP_15068318.1| ribosomal protein S1 [Yersinia pestis PY-06]
gi|420578492|ref|ZP_15073145.1| ribosomal protein S1 [Yersinia pestis PY-07]
gi|420583859|ref|ZP_15078023.1| ribosomal protein S1 [Yersinia pestis PY-08]
gi|420589004|ref|ZP_15082659.1| ribosomal protein S1 [Yersinia pestis PY-09]
gi|420594321|ref|ZP_15087447.1| ribosomal protein S1 [Yersinia pestis PY-10]
gi|420600008|ref|ZP_15092528.1| ribosomal protein S1 [Yersinia pestis PY-11]
gi|420605480|ref|ZP_15097427.1| ribosomal protein S1 [Yersinia pestis PY-12]
gi|420610840|ref|ZP_15102270.1| ribosomal protein S1 [Yersinia pestis PY-13]
gi|420616136|ref|ZP_15106960.1| ribosomal protein S1 [Yersinia pestis PY-14]
gi|420621527|ref|ZP_15111715.1| ribosomal protein S1 [Yersinia pestis PY-15]
gi|420626581|ref|ZP_15116299.1| ribosomal protein S1 [Yersinia pestis PY-16]
gi|420631781|ref|ZP_15120998.1| ribosomal protein S1 [Yersinia pestis PY-19]
gi|420636895|ref|ZP_15125577.1| ribosomal protein S1 [Yersinia pestis PY-25]
gi|420642438|ref|ZP_15130593.1| ribosomal protein S1 [Yersinia pestis PY-29]
gi|420647620|ref|ZP_15135324.1| ribosomal protein S1 [Yersinia pestis PY-32]
gi|420653271|ref|ZP_15140399.1| ribosomal protein S1 [Yersinia pestis PY-34]
gi|420658782|ref|ZP_15145353.1| ribosomal protein S1 [Yersinia pestis PY-36]
gi|420664064|ref|ZP_15150076.1| ribosomal protein S1 [Yersinia pestis PY-42]
gi|420669066|ref|ZP_15154613.1| ribosomal protein S1 [Yersinia pestis PY-45]
gi|420674365|ref|ZP_15159438.1| ribosomal protein S1 [Yersinia pestis PY-46]
gi|420679924|ref|ZP_15164471.1| ribosomal protein S1 [Yersinia pestis PY-47]
gi|420685179|ref|ZP_15169179.1| ribosomal protein S1 [Yersinia pestis PY-48]
gi|420690367|ref|ZP_15173770.1| ribosomal protein S1 [Yersinia pestis PY-52]
gi|420696164|ref|ZP_15178854.1| ribosomal protein S1 [Yersinia pestis PY-53]
gi|420701575|ref|ZP_15183445.1| ribosomal protein S1 [Yersinia pestis PY-54]
gi|420707512|ref|ZP_15188306.1| ribosomal protein S1 [Yersinia pestis PY-55]
gi|420712861|ref|ZP_15193118.1| ribosomal protein S1 [Yersinia pestis PY-56]
gi|420718268|ref|ZP_15197851.1| ribosomal protein S1 [Yersinia pestis PY-58]
gi|420723849|ref|ZP_15202663.1| ribosomal protein S1 [Yersinia pestis PY-59]
gi|420729473|ref|ZP_15207683.1| ribosomal protein S1 [Yersinia pestis PY-60]
gi|420734520|ref|ZP_15212241.1| ribosomal protein S1 [Yersinia pestis PY-61]
gi|420739992|ref|ZP_15217169.1| ribosomal protein S1 [Yersinia pestis PY-63]
gi|420745399|ref|ZP_15221893.1| ribosomal protein S1 [Yersinia pestis PY-64]
gi|420751122|ref|ZP_15226823.1| ribosomal protein S1 [Yersinia pestis PY-65]
gi|420756457|ref|ZP_15231411.1| ribosomal protein S1 [Yersinia pestis PY-66]
gi|420762240|ref|ZP_15236164.1| ribosomal protein S1 [Yersinia pestis PY-71]
gi|420767499|ref|ZP_15240911.1| ribosomal protein S1 [Yersinia pestis PY-72]
gi|420772474|ref|ZP_15245383.1| ribosomal protein S1 [Yersinia pestis PY-76]
gi|420777924|ref|ZP_15250240.1| ribosomal protein S1 [Yersinia pestis PY-88]
gi|420783439|ref|ZP_15255074.1| ribosomal protein S1 [Yersinia pestis PY-89]
gi|420788770|ref|ZP_15259779.1| ribosomal protein S1 [Yersinia pestis PY-90]
gi|420794239|ref|ZP_15264716.1| ribosomal protein S1 [Yersinia pestis PY-91]
gi|420799360|ref|ZP_15269318.1| ribosomal protein S1 [Yersinia pestis PY-92]
gi|420804705|ref|ZP_15274134.1| ribosomal protein S1 [Yersinia pestis PY-93]
gi|420809962|ref|ZP_15278886.1| ribosomal protein S1 [Yersinia pestis PY-94]
gi|420815645|ref|ZP_15283986.1| ribosomal protein S1 [Yersinia pestis PY-95]
gi|420820843|ref|ZP_15288686.1| ribosomal protein S1 [Yersinia pestis PY-96]
gi|420825932|ref|ZP_15293243.1| ribosomal protein S1 [Yersinia pestis PY-98]
gi|420831702|ref|ZP_15298458.1| ribosomal protein S1 [Yersinia pestis PY-99]
gi|420836553|ref|ZP_15302832.1| ribosomal protein S1 [Yersinia pestis PY-100]
gi|420841701|ref|ZP_15307494.1| ribosomal protein S1 [Yersinia pestis PY-101]
gi|420847322|ref|ZP_15312566.1| ribosomal protein S1 [Yersinia pestis PY-102]
gi|420852767|ref|ZP_15317342.1| ribosomal protein S1 [Yersinia pestis PY-103]
gi|420858251|ref|ZP_15322024.1| ribosomal protein S1 [Yersinia pestis PY-113]
gi|421762848|ref|ZP_16199645.1| 30S ribosomal protein S1 [Yersinia pestis INS]
gi|21959672|gb|AAM86332.1|AE013881_2 30S ribosomal subunit protein S1 [Yersinia pestis KIM10+]
gi|45435887|gb|AAS61444.1| 30S ribosomal protein S1 [Yersinia pestis biovar Microtus str.
91001]
gi|108776394|gb|ABG18913.1| SSU ribosomal protein S1P [Yersinia pestis Nepal516]
gi|108778593|gb|ABG12651.1| SSU ribosomal protein S1P [Yersinia pestis Antiqua]
gi|115347151|emb|CAL20044.1| 30S ribosomal protein S1 [Yersinia pestis CO92]
gi|149291023|gb|EDM41098.1| 30S ribosomal protein S1 [Yersinia pestis CA88-4125]
gi|165913125|gb|EDR31749.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str. IP275]
gi|165923593|gb|EDR40725.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991133|gb|EDR43434.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207240|gb|EDR51720.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962268|gb|EDR58289.1| ribosomal protein S1 [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050491|gb|EDR61899.1| ribosomal protein S1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057040|gb|EDR66803.1| ribosomal protein S1 [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229678924|gb|EEO75027.1| 30S ribosomal subunit protein S1 [Yersinia pestis Nepal516]
gi|229689814|gb|EEO81875.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229697728|gb|EEO87775.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700763|gb|EEO88792.1| 30S ribosomal subunit protein S1 [Yersinia pestis Pestoides A]
gi|262361423|gb|ACY58144.1| 30S ribosomal protein S1 [Yersinia pestis D106004]
gi|262365041|gb|ACY61598.1| 30S ribosomal protein S1 [Yersinia pestis D182038]
gi|270335453|gb|EFA46230.1| ribosomal protein S1 [Yersinia pestis KIM D27]
gi|294353841|gb|ADE64182.1| 30S ribosomal protein S1 [Yersinia pestis Z176003]
gi|320015749|gb|ADV99320.1| 30S ribosomal subunit protein S1 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342855878|gb|AEL74431.1| 30S ribosomal protein S1 [Yersinia pestis A1122]
gi|391428977|gb|EIQ90880.1| ribosomal protein S1 [Yersinia pestis PY-01]
gi|391430275|gb|EIQ92013.1| ribosomal protein S1 [Yersinia pestis PY-02]
gi|391431691|gb|EIQ93217.1| ribosomal protein S1 [Yersinia pestis PY-03]
gi|391444857|gb|EIR05042.1| ribosomal protein S1 [Yersinia pestis PY-04]
gi|391445828|gb|EIR05921.1| ribosomal protein S1 [Yersinia pestis PY-05]
gi|391449409|gb|EIR09136.1| ribosomal protein S1 [Yersinia pestis PY-06]
gi|391461380|gb|EIR19995.1| ribosomal protein S1 [Yersinia pestis PY-07]
gi|391462405|gb|EIR20925.1| ribosomal protein S1 [Yersinia pestis PY-08]
gi|391464532|gb|EIR22808.1| ribosomal protein S1 [Yersinia pestis PY-09]
gi|391477844|gb|EIR34825.1| ribosomal protein S1 [Yersinia pestis PY-10]
gi|391479140|gb|EIR35971.1| ribosomal protein S1 [Yersinia pestis PY-12]
gi|391479280|gb|EIR36094.1| ribosomal protein S1 [Yersinia pestis PY-11]
gi|391493228|gb|EIR48603.1| ribosomal protein S1 [Yersinia pestis PY-13]
gi|391494432|gb|EIR49656.1| ribosomal protein S1 [Yersinia pestis PY-15]
gi|391496954|gb|EIR51857.1| ribosomal protein S1 [Yersinia pestis PY-14]
gi|391509207|gb|EIR62853.1| ribosomal protein S1 [Yersinia pestis PY-16]
gi|391509855|gb|EIR63439.1| ribosomal protein S1 [Yersinia pestis PY-19]
gi|391514149|gb|EIR67289.1| ribosomal protein S1 [Yersinia pestis PY-25]
gi|391524711|gb|EIR76902.1| ribosomal protein S1 [Yersinia pestis PY-29]
gi|391527357|gb|EIR79279.1| ribosomal protein S1 [Yersinia pestis PY-34]
gi|391528412|gb|EIR80228.1| ribosomal protein S1 [Yersinia pestis PY-32]
gi|391540793|gb|EIR91395.1| ribosomal protein S1 [Yersinia pestis PY-36]
gi|391542960|gb|EIR93338.1| ribosomal protein S1 [Yersinia pestis PY-42]
gi|391544152|gb|EIR94403.1| ribosomal protein S1 [Yersinia pestis PY-45]
gi|391558119|gb|EIS07034.1| ribosomal protein S1 [Yersinia pestis PY-46]
gi|391558629|gb|EIS07494.1| ribosomal protein S1 [Yersinia pestis PY-47]
gi|391559883|gb|EIS08581.1| ribosomal protein S1 [Yersinia pestis PY-48]
gi|391573276|gb|EIS20361.1| ribosomal protein S1 [Yersinia pestis PY-52]
gi|391573848|gb|EIS20830.1| ribosomal protein S1 [Yersinia pestis PY-53]
gi|391585065|gb|EIS30510.1| ribosomal protein S1 [Yersinia pestis PY-54]
gi|391585688|gb|EIS31066.1| ribosomal protein S1 [Yersinia pestis PY-55]
gi|391589273|gb|EIS34192.1| ribosomal protein S1 [Yersinia pestis PY-56]
gi|391602537|gb|EIS45816.1| ribosomal protein S1 [Yersinia pestis PY-60]
gi|391602557|gb|EIS45834.1| ribosomal protein S1 [Yersinia pestis PY-58]
gi|391604227|gb|EIS47261.1| ribosomal protein S1 [Yersinia pestis PY-59]
gi|391616938|gb|EIS58537.1| ribosomal protein S1 [Yersinia pestis PY-61]
gi|391617772|gb|EIS59285.1| ribosomal protein S1 [Yersinia pestis PY-63]
gi|391623804|gb|EIS64523.1| ribosomal protein S1 [Yersinia pestis PY-64]
gi|391628797|gb|EIS68812.1| ribosomal protein S1 [Yersinia pestis PY-65]
gi|391640022|gb|EIS78621.1| ribosomal protein S1 [Yersinia pestis PY-71]
gi|391641538|gb|EIS79929.1| ribosomal protein S1 [Yersinia pestis PY-66]
gi|391642421|gb|EIS80698.1| ribosomal protein S1 [Yersinia pestis PY-72]
gi|391652138|gb|EIS89229.1| ribosomal protein S1 [Yersinia pestis PY-76]
gi|391657602|gb|EIS94095.1| ribosomal protein S1 [Yersinia pestis PY-88]
gi|391662571|gb|EIS98485.1| ribosomal protein S1 [Yersinia pestis PY-89]
gi|391664998|gb|EIT00624.1| ribosomal protein S1 [Yersinia pestis PY-90]
gi|391671608|gb|EIT06525.1| ribosomal protein S1 [Yersinia pestis PY-91]
gi|391683142|gb|EIT16946.1| ribosomal protein S1 [Yersinia pestis PY-93]
gi|391684589|gb|EIT18239.1| ribosomal protein S1 [Yersinia pestis PY-92]
gi|391685302|gb|EIT18856.1| ribosomal protein S1 [Yersinia pestis PY-94]
gi|391697027|gb|EIT29450.1| ribosomal protein S1 [Yersinia pestis PY-95]
gi|391700716|gb|EIT32792.1| ribosomal protein S1 [Yersinia pestis PY-96]
gi|391702009|gb|EIT33951.1| ribosomal protein S1 [Yersinia pestis PY-98]
gi|391711161|gb|EIT42148.1| ribosomal protein S1 [Yersinia pestis PY-99]
gi|391717869|gb|EIT48179.1| ribosomal protein S1 [Yersinia pestis PY-100]
gi|391718311|gb|EIT48566.1| ribosomal protein S1 [Yersinia pestis PY-101]
gi|391728923|gb|EIT57967.1| ribosomal protein S1 [Yersinia pestis PY-102]
gi|391732050|gb|EIT60666.1| ribosomal protein S1 [Yersinia pestis PY-103]
gi|391736068|gb|EIT64128.1| ribosomal protein S1 [Yersinia pestis PY-113]
gi|411177054|gb|EKS47069.1| 30S ribosomal protein S1 [Yersinia pestis INS]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELAGGV 474
Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|419196034|ref|ZP_13739438.1| ribosomal protein S1 [Escherichia coli DEC8A]
gi|378051842|gb|EHW14157.1| ribosomal protein S1 [Escherichia coli DEC8A]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+L++
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLTV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|377576312|ref|ZP_09805296.1| 30S ribosomal protein S1 [Escherichia hermannii NBRC 105704]
gi|377542344|dbj|GAB50461.1| 30S ribosomal protein S1 [Escherichia hermannii NBRC 105704]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGTIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|354722801|ref|ZP_09037016.1| 30S ribosomal protein S1 [Enterobacter mori LMG 25706]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|336249513|ref|YP_004593223.1| 30S ribosomal protein S1 [Enterobacter aerogenes KCTC 2190]
gi|444352326|ref|YP_007388470.1| SSU ribosomal protein S1p [Enterobacter aerogenes EA1509E]
gi|334735569|gb|AEG97944.1| 30S ribosomal protein S1 [Enterobacter aerogenes KCTC 2190]
gi|443903156|emb|CCG30930.1| SSU ribosomal protein S1p [Enterobacter aerogenes EA1509E]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y + I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYVALNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEAD 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + S+++
Sbjct: 527 EKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|300716082|ref|YP_003740885.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
gi|299061918|emb|CAX59034.1| 30S ribosomal protein S1 [Erwinia billingiae Eb661]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW+ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNATGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYIS--LNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|429114951|ref|ZP_19175869.1| SSU ribosomal protein S1p [Cronobacter sakazakii 701]
gi|426318080|emb|CCK01982.1| SSU ribosomal protein S1p [Cronobacter sakazakii 701]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|82777566|ref|YP_403915.1| 30S ribosomal protein S1 [Shigella dysenteriae Sd197]
gi|309787782|ref|ZP_07682392.1| ribosomal protein S1 [Shigella dysenteriae 1617]
gi|81241714|gb|ABB62424.1| 30S ribosomal subunit protein S1 [Shigella dysenteriae Sd197]
gi|308924181|gb|EFP69678.1| ribosomal protein S1 [Shigella dysenteriae 1617]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSIGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVSKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|407071818|ref|ZP_11102656.1| 30S ribosomal protein S1 [Vibrio cyclitrophicus ZF14]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNAAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + G +++ + + + TIE + G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAD--NKKGVLVNGTVTAVDAKGATIELIEGV 474
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SEVS D I+D IL+ GD V K +DR+ I LSIK +E
Sbjct: 476 GYIRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDE 524
>gi|365969795|ref|YP_004951356.1| 30S ribosomal protein S1 [Enterobacter cloacae EcWSU1]
gi|365748708|gb|AEW72935.1| 30S ribosomal protein S1 [Enterobacter cloacae EcWSU1]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|421079040|ref|ZP_15539985.1| 30S ribosomal protein S1 [Pectobacterium wasabiae CFBP 3304]
gi|385871519|gb|AFI90039.1| 30S ribosomal protein S1 [Pectobacterium sp. SCC3193]
gi|401706227|gb|EJS96405.1| 30S ribosomal protein S1 [Pectobacterium wasabiae CFBP 3304]
Length = 569
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVVGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 458 S--VNKKGAIVTGKVTAVDAKGATVELADGV 486
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 424 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 482
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +LN GD V K +DR+ ++LS++ +E
Sbjct: 483 -ADGV---EGYLRASEASRDRIEDATLVLNVGDSVEAKYTGVDRKNRVVSLSVRAKDE 536
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|251789939|ref|YP_003004660.1| 30S ribosomal protein S1 [Dickeya zeae Ech1591]
gi|247538560|gb|ACT07181.1| ribosomal protein S1 [Dickeya zeae Ech1591]
Length = 569
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 458 S--VNKKGAIVTGKVTAVDAKGATVELADGV 486
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 424 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 482
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +LN GDE+ K +DR+ ++LSI+ +E
Sbjct: 483 -ADGV---EGYLRASEASRDRIEDATLVLNVGDEIEAKYTGVDRKNRVVSLSIRAKDE 536
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|440230307|ref|YP_007344100.1| ribosomal protein S1 [Serratia marcescens FGI94]
gi|440052012|gb|AGB81915.1| ribosomal protein S1 [Serratia marcescens FGI94]
Length = 580
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 227 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 280
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 281 GLKQLGEDP 289
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 355 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 409
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 410 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 468
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 469 S--MNKKGAIVTGKVTAVDAKGATVELAGGV 497
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D ++D +LN GD+V K +DR+ ++LS++ +E
Sbjct: 499 GYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAKDE 547
Score = 35.8 bits (81), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 261 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 320
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 321 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 374
Query: 133 DP 134
+P
Sbjct: 375 NP 376
>gi|429109723|ref|ZP_19171493.1| SSU ribosomal protein S1p [Cronobacter malonaticus 507]
gi|426310880|emb|CCJ97606.1| SSU ribosomal protein S1p [Cronobacter malonaticus 507]
Length = 593
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|411009665|ref|ZP_11385994.1| 30S ribosomal protein S1 [Aeromonas aquariorum AAK1]
gi|423196292|ref|ZP_17182875.1| 30S ribosomal protein S1 [Aeromonas hydrophila SSU]
gi|404632516|gb|EKB29121.1| 30S ribosomal protein S1 [Aeromonas hydrophila SSU]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+L +KQ+EEDP + L + G+++ + + IE G+
Sbjct: 430 SLGVKQIEEDPFNKYLSD--NKKGAIVKGKVTEVDAKGAVIELADGV 474
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR 65
+ ++++ E KG I V+Q + E +++ K + +NKY S I G+
Sbjct: 401 QGEEAVREFKKG---DEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGAIVKGK 457
Query: 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+
Sbjct: 458 VTEVDAKGAVIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDS 153
++LS++ +E ++ + Q+ V S++
Sbjct: 513 RTVSLSVRAKDEADERVAIDNLNQQEEVVFSNA 545
>gi|374623007|ref|ZP_09695525.1| 30S ribosomal protein S1 [Ectothiorhodospira sp. PHS-1]
gi|373942126|gb|EHQ52671.1| 30S ribosomal protein S1 [Ectothiorhodospira sp. PHS-1]
Length = 561
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-----NVEDIFVGR-------DYG 68
L G + K+I+ + +V S + V +YS+ N+++ V DYG
Sbjct: 147 LEGKELEFKLIKLDRRRNNVVVSRRAVVEKEYSAEREALLKNLQEGMVLNGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +++N GDE++VKV+K DRE++R++L +K
Sbjct: 207 AFLDLGGIDGLLHIT------DMAWKRVKHPSEVVNIGDEIQVKVLKFDRERNRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 66/116 (56%), Gaps = 16/116 (13%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYH 81
++ +EE +++ K W+++++ N + G D+G F+ L DG
Sbjct: 332 ILDIDEERRRISLGMKQCQPNPWDEFAAMHNKGEKVSGVIKSITDFGIFVGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+S++SW++ + +R+ +G+E+ V+ +D E+ RI+L +KQL++DP
Sbjct: 387 IDGLVHLSDLSWNMPGEEAVRN-FRKGEEIEAVVLSVDPERERISLGLKQLDKDPF 441
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G++ SE+S D ++D R +LN GD V K + +DR+ +TLSIK E D
Sbjct: 476 GILRASELSRDRVEDARSVLNVGDAVEAKFVGVDRKNRTVTLSIKAKESD---------- 525
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDG 182
++ V+ D S S++ ++ LGA+ +E L G
Sbjct: 526 -EEAEVMQDYSGSSAATTS-------LGALLKEQLAGSG 556
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W + R V G+ DYG F+ +
Sbjct: 238 GDEIQVKVLKFDRERNRVSLGLKQLGEDPWENITRRYPVGTRLFGKITNITDYGCFVEVE 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+ W + + ++ G+EV V ++ ID E+ RI+L +KQ + +
Sbjct: 298 --DGV---EGLVHVSEMDWTNKNVNPAKVVVVGEEVEVMILDIDEERRRISLGMKQCQPN 352
Query: 134 P 134
P
Sbjct: 353 P 353
>gi|320539238|ref|ZP_08038908.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
gi|320030630|gb|EFW12639.1| 30S ribosomal subunit protein S1 [Serratia symbiotica str. Tucson]
Length = 558
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV +KV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTIKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +RD +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRD-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
I + G++++ + + T+E G+
Sbjct: 446 S--INKKGTIVTGKVTAVDAKGATVELAGGV 474
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + VSE S D I+D +LN GDEV K +DR+ ++LS++ +E
Sbjct: 476 GYLRVSEASRDRIEDATLVLNVGDEVEAKFTGVDRKNRVVSLSVRAKDE 524
>gi|117617800|ref|YP_856344.1| 30S ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117559207|gb|ABK36155.1| ribosomal protein S1 [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+L +KQ+EEDP + L + G+++ + + IE G+
Sbjct: 430 SLGVKQIEEDPFNKYLSD--NKKGAIVKGKVTEVDAKGAVIELADGV 474
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR 65
+ ++++ E KG I V+Q + E +++ K + +NKY S I G+
Sbjct: 401 QGEEAVREFKKG---DEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGAIVKGK 457
Query: 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+
Sbjct: 458 VTEVDAKGAVIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512
Query: 121 SRITLSIKQLEE 132
++LS++ +E
Sbjct: 513 RTVSLSVRAKDE 524
>gi|432684748|ref|ZP_19920057.1| 30S ribosomal protein S1 [Escherichia coli KTE156]
gi|431223883|gb|ELF21127.1| 30S ribosomal protein S1 [Escherichia coli KTE156]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|423207049|ref|ZP_17193605.1| 30S ribosomal protein S1 [Aeromonas veronii AMC34]
gi|404621342|gb|EKB18231.1| 30S ribosomal protein S1 [Aeromonas veronii AMC34]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+L +KQ+EEDP + L + G+++ + + IE G+
Sbjct: 430 SLGVKQIEEDPFNKYLAD--NKKGAIVKGKVTEVDAKGAVIELADGV 474
Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+ ++LS+
Sbjct: 465 GAVIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
>gi|419125377|ref|ZP_13670273.1| ribosomal protein S1 [Escherichia coli DEC5C]
gi|377978172|gb|EHV41452.1| ribosomal protein S1 [Escherichia coli DEC5C]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLD-----SG 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|383189455|ref|YP_005199583.1| 30S ribosomal protein S1 [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371587713|gb|AEX51443.1| ribosomal protein S1 [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 569
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 362 KNNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 416
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP L + + G++++ +
Sbjct: 417 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLS--VNKKGTIVTGKVTAV 473
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 474 DAKGATVELAGGV 486
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SE S D I+D +LN GD+V K +DR+ ++LS++ +E
Sbjct: 488 GYLRASEASRDRIEDATLVLNVGDDVEAKFTGVDRKNRVVSLSVRAKDE 536
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
>gi|374314235|ref|YP_005060664.1| 30S ribosomal protein S1 [Serratia symbiotica str. 'Cinara cedri']
gi|363988461|gb|AEW44652.1| 30S ribosomal protein S1 [Serratia symbiotica str. 'Cinara cedri']
Length = 561
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV VK++K DRE++R++L
Sbjct: 207 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPTEIVNVGDEVTVKILKFDRERTRVSL 260
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 261 GLKQLGEDP 269
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +++ N D G+
Sbjct: 316 NKNIHPSKVVNVGDFVEVMVLDIDEERRRISLGLKQCKPNPWQQFADSHNKGDHVEGKIK 375
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +RD +GDE+ V+++D E+
Sbjct: 376 SITDFGIFIGL---DG--GIDGLVHLSDISWNVSGEDAVRD-YKKGDEIAAVVLQVDAER 429
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQL EDP L + + G++++ + + T+E + G+
Sbjct: 430 ERISLGIKQLAEDPFNNYLS--MNKKGNIVTGKVTAVETKGATVELVGGV 477
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI
Sbjct: 292 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDFVEVMVLDIDEERRRI 345
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 346 SLGLKQCKPNP 356
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S +I G+ GA + L
Sbjct: 415 GDEIAAVVLQVDAERERISLGIKQLAEDPFNNYLSMNKKGNIVTGKVTAVETKGATVEL- 473
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ + G + SEVS + ++D +LN GD V K I +DR+ ++LSI+ +E
Sbjct: 474 ----VGGVEGYLRASEVSRNRVEDTTLVLNVGDAVEAKFIGVDRKNRIVSLSIRAKDE 527
>gi|334705228|ref|ZP_08521094.1| 30S ribosomal protein S1 [Aeromonas caviae Ae398]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+L +KQ+EEDP + L + G+++ + + IE G+
Sbjct: 430 SLGVKQIEEDPFNKYLSD--NKKGAIVKGKVTEVDAKGAVIELADGV 474
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR 65
+ ++++ E KG I V+Q + E +++ K + +NKY S I G+
Sbjct: 401 QGEEAVREFKKG---DEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGAIVKGK 457
Query: 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+
Sbjct: 458 VTEVDAKGAVIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512
Query: 121 SRITLSIKQLEE 132
++LS++ +E
Sbjct: 513 RTVSLSVRAKDE 524
>gi|319760512|ref|YP_004124450.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
gi|318039226|gb|ADV33776.1| 30S ribosomal protein S1 [Candidatus Blochmannia vafer str. BVAF]
Length = 575
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G I KVI+ + + +V S E+D + NK V ++ + DYG
Sbjct: 147 LEGQICEFKVIKLDYKRNNVVVSRRAAIESENSAERDQLLNKLHEGVVLKGLVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H++++SW ++ D++N GD + VKV+K D+E+ R++L +K
Sbjct: 207 AFIDLGGIDGL------LHITDISWKRVKHPSDVINIGDSITVKVLKFDKERIRVSLGLK 260
Query: 129 QLEEDP 134
QL++DP
Sbjct: 261 QLQDDP 266
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G +I V V+ +++ +++ K W K+S D G+ D+G FI L
Sbjct: 325 GDLIEVIVLDIDKDRRRISLGLKQCKINPWQKFSEMYTRGDKVSGKIKSVTDFGIFIGLE 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+S++SWD++ ++ + +GDE+ V+++D E+ RI+LSIKQL ED
Sbjct: 385 GG-----IDGLVHLSDISWDMVNEESINKYKKGDEIEAVVLQVDIERERISLSIKQLTED 439
Query: 134 PL 135
PL
Sbjct: 440 PL 441
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E ++ K D W D VG+ DYG FI ++
Sbjct: 238 GDSITVKVLKFDKERIRVSLGLKQLQDDPWASVIHNYKEGDKLVGKVTNLTDYGCFIEIK 297
Query: 75 FPDGLYHLTGLVHVSEVSW--DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+SE+ W IQ + ++ GD + V V+ ID+++ RI+L +KQ +
Sbjct: 298 GG-----VEGLVHISEMDWTNKNIQPSK-VVAIGDLIEVIVLDIDKDRRRISLGLKQCKI 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
Length = 405
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN----------VEDIFVGR--DYGAF 70
G + VKV + + E K++ S+KD + ++ S V + V R +GAF
Sbjct: 156 GRTLRVKVKELDRENNKVILSQKDVLEEEFESNKQKVMSELQDGQVLEGTVQRLTQFGAF 215
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VHVSE++W ++ D+L+EGD+VRVKV+K+D EK +I+LSIK
Sbjct: 216 VDVGGVDGL------VHVSEIAWSHVEKPADVLSEGDQVRVKVLKVDPEKGKISLSIKAA 269
Query: 131 EEDP 134
P
Sbjct: 270 APGP 273
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E K+ S K A W + N DI G +GAF+ L
Sbjct: 245 GDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVEL- 303
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+S++S I +++L EG EV+VKV+ I+ + R++LSIK+ EE P
Sbjct: 304 ----APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRVSLSIKETEEAP 359
>gi|133870|sp|P14128.1|RS1_PROSP RecName: Full=30S ribosomal protein S1
gi|897799|emb|CAA26596.1| unnamed protein product [Providencia sp.]
Length = 378
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 99 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 152
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 153 GLKQLGEDP 161
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 227 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 281
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 282 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 340
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + + T+E G+
Sbjct: 341 --AATKKGAIVTGKVTAVDAKGATVELTLGV 369
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 133 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 192
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 193 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246
Query: 133 DP 134
+P
Sbjct: 247 NP 248
>gi|15800772|ref|NP_286786.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. EDL933]
gi|15830248|ref|NP_309021.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. Sakai]
gi|16128878|ref|NP_415431.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. MG1655]
gi|24112320|ref|NP_706830.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 301]
gi|26246936|ref|NP_752976.1| 30S ribosomal protein S1 [Escherichia coli CFT073]
gi|30062446|ref|NP_836617.1| 30S ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
gi|74311468|ref|YP_309887.1| 30S ribosomal protein S1 [Shigella sonnei Ss046]
gi|82544650|ref|YP_408597.1| 30S ribosomal protein S1 [Shigella boydii Sb227]
gi|91210012|ref|YP_539998.1| 30S ribosomal protein S1 [Escherichia coli UTI89]
gi|110641108|ref|YP_668838.1| 30S ribosomal protein S1 [Escherichia coli 536]
gi|110804919|ref|YP_688439.1| 30S ribosomal protein S1 [Shigella flexneri 5 str. 8401]
gi|117623129|ref|YP_852042.1| 30S ribosomal protein S1 [Escherichia coli APEC O1]
gi|157156817|ref|YP_001462129.1| 30S ribosomal protein S1 [Escherichia coli E24377A]
gi|157160433|ref|YP_001457751.1| 30S ribosomal protein S1 [Escherichia coli HS]
gi|168751174|ref|ZP_02776196.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
gi|168757003|ref|ZP_02782010.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
gi|168762954|ref|ZP_02787961.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
gi|168787340|ref|ZP_02812347.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
gi|168801406|ref|ZP_02826413.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
gi|170020687|ref|YP_001725641.1| 30S ribosomal protein S1 [Escherichia coli ATCC 8739]
gi|170080569|ref|YP_001729889.1| 30S ribosomal protein S1 [Escherichia coli str. K-12 substr. DH10B]
gi|170682691|ref|YP_001744259.1| 30S ribosomal protein S1 [Escherichia coli SMS-3-5]
gi|170769166|ref|ZP_02903619.1| ribosomal protein S1 [Escherichia albertii TW07627]
gi|187733119|ref|YP_001880894.1| 30S ribosomal protein S1 [Shigella boydii CDC 3083-94]
gi|188493632|ref|ZP_03000902.1| ribosomal protein S1 [Escherichia coli 53638]
gi|191172054|ref|ZP_03033598.1| ribosomal protein S1 [Escherichia coli F11]
gi|193064659|ref|ZP_03045738.1| ribosomal protein S1 [Escherichia coli E22]
gi|193070761|ref|ZP_03051696.1| ribosomal protein S1 [Escherichia coli E110019]
gi|194428403|ref|ZP_03060944.1| ribosomal protein S1 [Escherichia coli B171]
gi|194438750|ref|ZP_03070837.1| ribosomal protein S1 [Escherichia coli 101-1]
gi|208815475|ref|ZP_03256654.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
gi|208822805|ref|ZP_03263124.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
gi|209397472|ref|YP_002269583.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
gi|209918161|ref|YP_002292245.1| 30S ribosomal protein S1 [Escherichia coli SE11]
gi|215486036|ref|YP_002328467.1| 30S ribosomal protein S1 [Escherichia coli O127:H6 str. E2348/69]
gi|217326370|ref|ZP_03442454.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
gi|218553498|ref|YP_002386411.1| 30S ribosomal protein S1 [Escherichia coli IAI1]
gi|218557816|ref|YP_002390729.1| 30S ribosomal protein S1 [Escherichia coli S88]
gi|218688751|ref|YP_002396963.1| 30S ribosomal protein S1 [Escherichia coli ED1a]
gi|218694384|ref|YP_002402051.1| 30S ribosomal protein S1 [Escherichia coli 55989]
gi|218700570|ref|YP_002408199.1| 30S ribosomal protein S1 [Escherichia coli IAI39]
gi|218704338|ref|YP_002411857.1| 30S ribosomal protein S1 [Escherichia coli UMN026]
gi|222155637|ref|YP_002555776.1| 30S ribosomal protein S1 [Escherichia coli LF82]
gi|227884124|ref|ZP_04001929.1| 30S ribosomal protein S1 [Escherichia coli 83972]
gi|237707101|ref|ZP_04537582.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
gi|238900169|ref|YP_002925965.1| 30S ribosomal protein S1 [Escherichia coli BW2952]
gi|251784453|ref|YP_002998757.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
gi|253774060|ref|YP_003036891.1| 30S ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254161025|ref|YP_003044133.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
gi|254287833|ref|YP_003053581.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
gi|254792110|ref|YP_003076947.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. TW14359]
gi|260843161|ref|YP_003220939.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
12009]
gi|260854202|ref|YP_003228093.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. 11368]
gi|260867083|ref|YP_003233485.1| 30S ribosomal protein S1 [Escherichia coli O111:H- str. 11128]
gi|261227414|ref|ZP_05941695.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256163|ref|ZP_05948696.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
FRIK966]
gi|291281912|ref|YP_003498730.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
gi|293404216|ref|ZP_06648210.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
gi|293409288|ref|ZP_06652864.1| 30S ribosomal protein S1 [Escherichia coli B354]
gi|293414191|ref|ZP_06656840.1| 30S ribosomal protein S1 [Escherichia coli B185]
gi|293433208|ref|ZP_06661636.1| 30S ribosomal protein S1 [Escherichia coli B088]
gi|297520622|ref|ZP_06939008.1| 30S ribosomal protein S1 [Escherichia coli OP50]
gi|298379996|ref|ZP_06989601.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
gi|300816985|ref|ZP_07097204.1| ribosomal protein S1 [Escherichia coli MS 107-1]
gi|300823651|ref|ZP_07103778.1| ribosomal protein S1 [Escherichia coli MS 119-7]
gi|300901659|ref|ZP_07119719.1| ribosomal protein S1 [Escherichia coli MS 198-1]
gi|300902930|ref|ZP_07120875.1| ribosomal protein S1 [Escherichia coli MS 84-1]
gi|300921052|ref|ZP_07137438.1| ribosomal protein S1 [Escherichia coli MS 115-1]
gi|300925411|ref|ZP_07141296.1| ribosomal protein S1 [Escherichia coli MS 182-1]
gi|300929606|ref|ZP_07145068.1| ribosomal protein S1 [Escherichia coli MS 187-1]
gi|300949727|ref|ZP_07163705.1| ribosomal protein S1 [Escherichia coli MS 116-1]
gi|300955441|ref|ZP_07167815.1| ribosomal protein S1 [Escherichia coli MS 175-1]
gi|300978464|ref|ZP_07174279.1| ribosomal protein S1 [Escherichia coli MS 45-1]
gi|300983139|ref|ZP_07176453.1| ribosomal protein S1 [Escherichia coli MS 200-1]
gi|301022405|ref|ZP_07186288.1| ribosomal protein S1 [Escherichia coli MS 196-1]
gi|301023014|ref|ZP_07186825.1| ribosomal protein S1 [Escherichia coli MS 69-1]
gi|301047830|ref|ZP_07194881.1| ribosomal protein S1 [Escherichia coli MS 185-1]
gi|301302481|ref|ZP_07208612.1| ribosomal protein S1 [Escherichia coli MS 124-1]
gi|301326622|ref|ZP_07219955.1| ribosomal protein S1 [Escherichia coli MS 78-1]
gi|301643431|ref|ZP_07243479.1| ribosomal protein S1 [Escherichia coli MS 146-1]
gi|306812636|ref|ZP_07446829.1| 30S ribosomal protein S1 [Escherichia coli NC101]
gi|307311702|ref|ZP_07591342.1| ribosomal protein S1 [Escherichia coli W]
gi|309795105|ref|ZP_07689525.1| ribosomal protein S1 [Escherichia coli MS 145-7]
gi|312969023|ref|ZP_07783230.1| ribosomal protein S1 [Escherichia coli 2362-75]
gi|312971039|ref|ZP_07785218.1| ribosomal protein S1 [Escherichia coli 1827-70]
gi|331641437|ref|ZP_08342572.1| ribosomal protein S1 [Escherichia coli H736]
gi|331646176|ref|ZP_08347279.1| ribosomal protein S1 [Escherichia coli M605]
gi|331651931|ref|ZP_08352950.1| ribosomal protein S1 [Escherichia coli M718]
gi|331662324|ref|ZP_08363247.1| ribosomal protein S1 [Escherichia coli TA143]
gi|331667288|ref|ZP_08368153.1| ribosomal protein S1 [Escherichia coli TA271]
gi|331672450|ref|ZP_08373240.1| ribosomal protein S1 [Escherichia coli TA280]
gi|331676699|ref|ZP_08377395.1| ribosomal protein S1 [Escherichia coli H591]
gi|331682418|ref|ZP_08383037.1| ribosomal protein S1 [Escherichia coli H299]
gi|332282184|ref|ZP_08394597.1| ribosomal protein S1 [Shigella sp. D9]
gi|366159030|ref|ZP_09458892.1| 30S ribosomal protein S1 [Escherichia sp. TW09308]
gi|378713683|ref|YP_005278576.1| 30S ribosomal protein S1 [Escherichia coli KO11FL]
gi|383177553|ref|YP_005455558.1| 30S ribosomal protein S1 [Shigella sonnei 53G]
gi|384542486|ref|YP_005726548.1| 30S ribosomal protein S1 [Shigella flexneri 2002017]
gi|386280027|ref|ZP_10057697.1| 30S ribosomal protein S1 [Escherichia sp. 4_1_40B]
gi|386596254|ref|YP_006092654.1| 30S ribosomal protein S1 [Escherichia coli DH1]
gi|386598690|ref|YP_006100196.1| 30S ribosomal protein S1 [Escherichia coli IHE3034]
gi|386605178|ref|YP_006111478.1| 30S ribosomal protein S1 [Escherichia coli UM146]
gi|386608279|ref|YP_006123765.1| 30S ribosomal protein S1 [Escherichia coli W]
gi|386613185|ref|YP_006132851.1| ribosomal protein RpsA [Escherichia coli UMNK88]
gi|386618514|ref|YP_006138094.1| 30S ribosomal protein S1 [Escherichia coli NA114]
gi|386623317|ref|YP_006143045.1| 30S ribosomal protein S1 [Escherichia coli O7:K1 str. CE10]
gi|386628450|ref|YP_006148170.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i2']
gi|386633370|ref|YP_006153089.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i14']
gi|386638258|ref|YP_006105056.1| 30S ribosomal protein [Escherichia coli ABU 83972]
gi|386702117|ref|YP_006165954.1| 30S ribosomal protein S1 [Escherichia coli KO11FL]
gi|386704091|ref|YP_006167938.1| 30S ribosomal protein S1 [Escherichia coli P12b]
gi|386708722|ref|YP_006172443.1| 30S ribosomal protein S1 [Escherichia coli W]
gi|387506022|ref|YP_006158278.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. RM12579]
gi|387606462|ref|YP_006095318.1| 30S ribosomal protein S1 [Escherichia coli 042]
gi|387611451|ref|YP_006114567.1| 30S ribosomal protein S1 [Escherichia coli ETEC H10407]
gi|387616170|ref|YP_006119192.1| 30S ribosomal protein S1 [Escherichia coli O83:H1 str. NRG 857C]
gi|387620636|ref|YP_006128263.1| 30S ribosomal protein S1 [Escherichia coli DH1]
gi|387828885|ref|YP_003348822.1| 30S ribosomal protein S1 [Escherichia coli SE15]
gi|387881523|ref|YP_006311825.1| 30S ribosomal protein S1 [Escherichia coli Xuzhou21]
gi|388476995|ref|YP_489183.1| 30S ribosomal protein S1 [Escherichia coli str. K-12 substr. W3110]
gi|404374235|ref|ZP_10979454.1| 30S ribosomal protein S1 [Escherichia sp. 1_1_43]
gi|407468384|ref|YP_006785174.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482884|ref|YP_006780033.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 2011C-3493]
gi|410483436|ref|YP_006770982.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414575185|ref|ZP_11432391.1| ribosomal protein S1 [Shigella sonnei 3233-85]
gi|415773279|ref|ZP_11485911.1| ribosomal protein S1 [Escherichia coli 3431]
gi|415782204|ref|ZP_11491442.1| ribosomal protein S1 [Escherichia coli EPECa14]
gi|415803306|ref|ZP_11500415.1| ribosomal protein S1 [Escherichia coli E128010]
gi|415809507|ref|ZP_11502277.1| ribosomal protein S1 [Escherichia coli LT-68]
gi|415824683|ref|ZP_11512917.1| ribosomal protein S1 [Escherichia coli OK1180]
gi|415827566|ref|ZP_11514407.1| ribosomal protein S1 [Escherichia coli OK1357]
gi|415837011|ref|ZP_11519261.1| ribosomal protein S1 [Escherichia coli RN587/1]
gi|415850407|ref|ZP_11527282.1| ribosomal protein S1 [Shigella sonnei 53G]
gi|415854018|ref|ZP_11529908.1| ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
gi|415860922|ref|ZP_11534637.1| ribosomal protein S1 [Escherichia coli MS 85-1]
gi|415875820|ref|ZP_11542470.1| ribosomal protein S1 [Escherichia coli MS 79-10]
gi|416275247|ref|ZP_11643902.1| SSU ribosomal protein S1p [Shigella dysenteriae CDC 74-1112]
gi|416280203|ref|ZP_11645225.1| SSU ribosomal protein S1p [Shigella boydii ATCC 9905]
gi|416309428|ref|ZP_11655800.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1044]
gi|416317307|ref|ZP_11660348.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. EC1212]
gi|416332066|ref|ZP_11670145.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1125]
gi|416335058|ref|ZP_11671769.1| SSU ribosomal protein S1p [Escherichia coli WV_060327]
gi|416340510|ref|ZP_11675463.1| SSU ribosomal protein S1p [Escherichia coli EC4100B]
gi|416782018|ref|ZP_11877487.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. G5101]
gi|416793250|ref|ZP_11882411.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. 493-89]
gi|416804516|ref|ZP_11887271.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. H 2687]
gi|416815639|ref|ZP_11891977.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. 3256-97]
gi|416825374|ref|ZP_11896562.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. USDA 5905]
gi|416836218|ref|ZP_11901833.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. LSU-61]
gi|416896493|ref|ZP_11926340.1| ribosomal protein S1 [Escherichia coli STEC_7v]
gi|417083412|ref|ZP_11951507.1| 30S ribosomal protein S1 [Escherichia coli cloneA_i1]
gi|417118726|ref|ZP_11969244.1| ribosomal protein S1 [Escherichia coli 1.2741]
gi|417120673|ref|ZP_11970231.1| ribosomal protein S1 [Escherichia coli 97.0246]
gi|417130707|ref|ZP_11975978.1| ribosomal protein S1 [Escherichia coli 5.0588]
gi|417137326|ref|ZP_11981116.1| ribosomal protein S1 [Escherichia coli 97.0259]
gi|417144447|ref|ZP_11986253.1| ribosomal protein S1 [Escherichia coli 1.2264]
gi|417152613|ref|ZP_11991404.1| ribosomal protein S1 [Escherichia coli 96.0497]
gi|417161417|ref|ZP_11997653.1| ribosomal protein S1 [Escherichia coli 99.0741]
gi|417171249|ref|ZP_12001778.1| ribosomal protein S1 [Escherichia coli 3.2608]
gi|417180347|ref|ZP_12008055.1| ribosomal protein S1 [Escherichia coli 93.0624]
gi|417193042|ref|ZP_12014889.1| ribosomal protein S1 [Escherichia coli 4.0522]
gi|417209570|ref|ZP_12020854.1| ribosomal protein S1 [Escherichia coli JB1-95]
gi|417224909|ref|ZP_12028200.1| ribosomal protein S1 [Escherichia coli 96.154]
gi|417230306|ref|ZP_12031892.1| ribosomal protein S1 [Escherichia coli 5.0959]
gi|417241402|ref|ZP_12037348.1| ribosomal protein S1 [Escherichia coli 9.0111]
gi|417251390|ref|ZP_12043155.1| ribosomal protein S1 [Escherichia coli 4.0967]
gi|417261433|ref|ZP_12048921.1| ribosomal protein S1 [Escherichia coli 2.3916]
gi|417267033|ref|ZP_12054394.1| ribosomal protein S1 [Escherichia coli 3.3884]
gi|417274215|ref|ZP_12061555.1| ribosomal protein S1 [Escherichia coli 2.4168]
gi|417276377|ref|ZP_12063707.1| ribosomal protein S1 [Escherichia coli 3.2303]
gi|417282972|ref|ZP_12070270.1| ribosomal protein S1 [Escherichia coli 3003]
gi|417289241|ref|ZP_12076526.1| ribosomal protein S1 [Escherichia coli TW07793]
gi|417289793|ref|ZP_12077076.1| ribosomal protein S1 [Escherichia coli B41]
gi|417295038|ref|ZP_12082294.1| ribosomal protein S1 [Escherichia coli 900105 (10e)]
gi|417307378|ref|ZP_12094248.1| 30S ribosomal protein S1 [Escherichia coli PCN033]
gi|417580179|ref|ZP_12230996.1| ribosomal protein S1 [Escherichia coli STEC_B2F1]
gi|417585850|ref|ZP_12236623.1| ribosomal protein S1 [Escherichia coli STEC_C165-02]
gi|417590634|ref|ZP_12241349.1| ribosomal protein S1 [Escherichia coli 2534-86]
gi|417595928|ref|ZP_12246587.1| ribosomal protein S1 [Escherichia coli 3030-1]
gi|417601293|ref|ZP_12251873.1| ribosomal protein S1 [Escherichia coli STEC_94C]
gi|417607137|ref|ZP_12257656.1| ribosomal protein S1 [Escherichia coli STEC_DG131-3]
gi|417612009|ref|ZP_12262481.1| ribosomal protein S1 [Escherichia coli STEC_EH250]
gi|417617371|ref|ZP_12267801.1| ribosomal protein S1 [Escherichia coli G58-1]
gi|417622334|ref|ZP_12272654.1| ribosomal protein S1 [Escherichia coli STEC_H.1.8]
gi|417627845|ref|ZP_12278092.1| ribosomal protein S1 [Escherichia coli STEC_MHI813]
gi|417633546|ref|ZP_12283765.1| ribosomal protein S1 [Escherichia coli STEC_S1191]
gi|417638244|ref|ZP_12288409.1| ribosomal protein S1 [Escherichia coli TX1999]
gi|417661473|ref|ZP_12311054.1| SSU ribosomal protein S1p [Escherichia coli AA86]
gi|417666119|ref|ZP_12315677.1| ribosomal protein S1 [Escherichia coli STEC_O31]
gi|417672620|ref|ZP_12322083.1| ribosomal protein S1 [Shigella dysenteriae 155-74]
gi|417682650|ref|ZP_12332003.1| ribosomal protein S1 [Shigella boydii 3594-74]
gi|417688721|ref|ZP_12337962.1| ribosomal protein S1 [Shigella boydii 5216-82]
gi|417700974|ref|ZP_12350107.1| ribosomal protein S1 [Shigella flexneri K-218]
gi|417706584|ref|ZP_12355637.1| ribosomal protein S1 [Shigella flexneri VA-6]
gi|417711667|ref|ZP_12360666.1| ribosomal protein S1 [Shigella flexneri K-272]
gi|417716402|ref|ZP_12365331.1| ribosomal protein S1 [Shigella flexneri K-227]
gi|417722187|ref|ZP_12371020.1| ribosomal protein S1 [Shigella flexneri K-304]
gi|417727402|ref|ZP_12376138.1| ribosomal protein S1 [Shigella flexneri K-671]
gi|417732594|ref|ZP_12381260.1| ribosomal protein S1 [Shigella flexneri 2747-71]
gi|417737825|ref|ZP_12386424.1| ribosomal protein S1 [Shigella flexneri 4343-70]
gi|417742465|ref|ZP_12391011.1| ribosomal protein S1 [Shigella flexneri 2930-71]
gi|417754812|ref|ZP_12402903.1| ribosomal protein S1 [Escherichia coli DEC2B]
gi|417804291|ref|ZP_12451322.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. LB226692]
gi|417826999|ref|ZP_12473570.1| ribosomal protein S1 [Shigella flexneri J1713]
gi|417832045|ref|ZP_12478565.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 01-09591]
gi|417864197|ref|ZP_12509244.1| hypothetical protein C22711_1130 [Escherichia coli O104:H4 str.
C227-11]
gi|417943903|ref|ZP_12587149.1| 30S ribosomal protein S1 [Escherichia coli XH140A]
gi|417975234|ref|ZP_12616034.1| 30S ribosomal protein S1 [Escherichia coli XH001]
gi|418043054|ref|ZP_12681229.1| 30S ribosomal protein S1 [Escherichia coli W26]
gi|418254488|ref|ZP_12879279.1| ribosomal protein S1 [Shigella flexneri 6603-63]
gi|418263423|ref|ZP_12884392.1| ribosomal protein S1 [Shigella sonnei str. Moseley]
gi|418301848|ref|ZP_12913642.1| ribosomal protein S1 [Escherichia coli UMNF18]
gi|418941577|ref|ZP_13494900.1| 30S ribosomal protein S1 [Escherichia coli O157:H43 str. T22]
gi|418958752|ref|ZP_13510662.1| 30S ribosomal protein S1 [Escherichia coli J53]
gi|418996018|ref|ZP_13543625.1| ribosomal protein S1 [Escherichia coli DEC1A]
gi|419001177|ref|ZP_13548728.1| ribosomal protein S1 [Escherichia coli DEC1B]
gi|419006667|ref|ZP_13554120.1| ribosomal protein S1 [Escherichia coli DEC1C]
gi|419012512|ref|ZP_13559875.1| ribosomal protein S1 [Escherichia coli DEC1D]
gi|419017510|ref|ZP_13564829.1| ribosomal protein S1 [Escherichia coli DEC1E]
gi|419023103|ref|ZP_13570344.1| ribosomal protein S1 [Escherichia coli DEC2A]
gi|419027971|ref|ZP_13575163.1| ribosomal protein S1 [Escherichia coli DEC2C]
gi|419033808|ref|ZP_13580904.1| ribosomal protein S1 [Escherichia coli DEC2D]
gi|419038779|ref|ZP_13585832.1| ribosomal protein S1 [Escherichia coli DEC2E]
gi|419044202|ref|ZP_13591173.1| ribosomal protein S1 [Escherichia coli DEC3A]
gi|419049565|ref|ZP_13596481.1| ribosomal protein S1 [Escherichia coli DEC3B]
gi|419055646|ref|ZP_13602499.1| ribosomal protein S1 [Escherichia coli DEC3C]
gi|419061217|ref|ZP_13607996.1| ribosomal protein S1 [Escherichia coli DEC3D]
gi|419067491|ref|ZP_13613904.1| ribosomal protein S1 [Escherichia coli DEC3E]
gi|419074166|ref|ZP_13619734.1| ribosomal protein S1 [Escherichia coli DEC3F]
gi|419079327|ref|ZP_13624809.1| ribosomal protein S1 [Escherichia coli DEC4A]
gi|419084966|ref|ZP_13630375.1| ribosomal protein S1 [Escherichia coli DEC4B]
gi|419090928|ref|ZP_13636245.1| ribosomal protein S1 [Escherichia coli DEC4C]
gi|419096899|ref|ZP_13642141.1| ribosomal protein S1 [Escherichia coli DEC4D]
gi|419102704|ref|ZP_13647869.1| ribosomal protein S1 [Escherichia coli DEC4E]
gi|419108208|ref|ZP_13653314.1| ribosomal protein S1 [Escherichia coli DEC4F]
gi|419113836|ref|ZP_13658866.1| ribosomal protein S1 [Escherichia coli DEC5A]
gi|419119471|ref|ZP_13664449.1| ribosomal protein S1 [Escherichia coli DEC5B]
gi|419130720|ref|ZP_13675567.1| ribosomal protein S1 [Escherichia coli DEC5D]
gi|419135449|ref|ZP_13680255.1| ribosomal protein S1 [Escherichia coli DEC5E]
gi|419141435|ref|ZP_13686189.1| ribosomal protein S1 [Escherichia coli DEC6A]
gi|419147267|ref|ZP_13691957.1| ribosomal protein S1 [Escherichia coli DEC6B]
gi|419152834|ref|ZP_13697417.1| ribosomal protein S1 [Escherichia coli DEC6C]
gi|419158253|ref|ZP_13702770.1| ribosomal protein S1 [Escherichia coli DEC6D]
gi|419163222|ref|ZP_13707697.1| ribosomal protein S1 [Escherichia coli DEC6E]
gi|419168899|ref|ZP_13713293.1| ribosomal protein S1 [Escherichia coli DEC7A]
gi|419174492|ref|ZP_13718343.1| ribosomal protein S1 [Escherichia coli DEC7B]
gi|419179882|ref|ZP_13723505.1| ribosomal protein S1 [Escherichia coli DEC7C]
gi|419185441|ref|ZP_13728963.1| ribosomal protein S1 [Escherichia coli DEC7D]
gi|419190636|ref|ZP_13734103.1| ribosomal protein S1 [Escherichia coli DEC7E]
gi|419202089|ref|ZP_13745311.1| ribosomal protein S1 [Escherichia coli DEC8B]
gi|419208065|ref|ZP_13751188.1| ribosomal protein S1 [Escherichia coli DEC8C]
gi|419214610|ref|ZP_13757632.1| ribosomal protein S1 [Escherichia coli DEC8D]
gi|419220211|ref|ZP_13763163.1| ribosomal protein S1 [Escherichia coli DEC8E]
gi|419225702|ref|ZP_13768585.1| ribosomal protein S1 [Escherichia coli DEC9A]
gi|419231433|ref|ZP_13774221.1| ribosomal protein S1 [Escherichia coli DEC9B]
gi|419236888|ref|ZP_13779631.1| ribosomal protein S1 [Escherichia coli DEC9C]
gi|419242417|ref|ZP_13785064.1| ribosomal protein S1 [Escherichia coli DEC9D]
gi|419247939|ref|ZP_13790546.1| ribosomal protein S1 [Escherichia coli DEC9E]
gi|419253676|ref|ZP_13796215.1| ribosomal protein S1 [Escherichia coli DEC10A]
gi|419259806|ref|ZP_13802248.1| ribosomal protein S1 [Escherichia coli DEC10B]
gi|419265681|ref|ZP_13808062.1| ribosomal protein S1 [Escherichia coli DEC10C]
gi|419271419|ref|ZP_13813743.1| ribosomal protein S1 [Escherichia coli DEC10D]
gi|419277185|ref|ZP_13819446.1| ribosomal protein S1 [Escherichia coli DEC10E]
gi|419282901|ref|ZP_13825112.1| ribosomal protein S1 [Escherichia coli DEC10F]
gi|419288493|ref|ZP_13830602.1| ribosomal protein S1 [Escherichia coli DEC11A]
gi|419293800|ref|ZP_13835855.1| ribosomal protein S1 [Escherichia coli DEC11B]
gi|419299211|ref|ZP_13841224.1| ribosomal protein S1 [Escherichia coli DEC11C]
gi|419305502|ref|ZP_13847412.1| ribosomal protein S1 [Escherichia coli DEC11D]
gi|419310540|ref|ZP_13852411.1| ribosomal protein S1 [Escherichia coli DEC11E]
gi|419315827|ref|ZP_13857651.1| ribosomal protein S1 [Escherichia coli DEC12A]
gi|419321775|ref|ZP_13863507.1| ribosomal protein S1 [Escherichia coli DEC12B]
gi|419327906|ref|ZP_13869534.1| ribosomal protein S1 [Escherichia coli DEC12C]
gi|419333428|ref|ZP_13874983.1| ribosomal protein S1 [Escherichia coli DEC12D]
gi|419338745|ref|ZP_13880230.1| ribosomal protein S1 [Escherichia coli DEC12E]
gi|419344539|ref|ZP_13885921.1| ribosomal protein S1 [Escherichia coli DEC13A]
gi|419348977|ref|ZP_13890330.1| ribosomal protein S1 [Escherichia coli DEC13B]
gi|419354070|ref|ZP_13895346.1| ribosomal protein S1 [Escherichia coli DEC13C]
gi|419359363|ref|ZP_13900588.1| ribosomal protein S1 [Escherichia coli DEC13D]
gi|419364294|ref|ZP_13905471.1| ribosomal protein S1 [Escherichia coli DEC13E]
gi|419369226|ref|ZP_13910352.1| ribosomal protein S1 [Escherichia coli DEC14A]
gi|419374674|ref|ZP_13915722.1| ribosomal protein S1 [Escherichia coli DEC14B]
gi|419379970|ref|ZP_13920937.1| ribosomal protein S1 [Escherichia coli DEC14C]
gi|419385317|ref|ZP_13926205.1| ribosomal protein S1 [Escherichia coli DEC14D]
gi|419390368|ref|ZP_13931202.1| ribosomal protein S1 [Escherichia coli DEC15A]
gi|419395527|ref|ZP_13936309.1| ribosomal protein S1 [Escherichia coli DEC15B]
gi|419400883|ref|ZP_13941614.1| ribosomal protein S1 [Escherichia coli DEC15C]
gi|419406094|ref|ZP_13946793.1| ribosomal protein S1 [Escherichia coli DEC15D]
gi|419411561|ref|ZP_13952229.1| ribosomal protein S1 [Escherichia coli DEC15E]
gi|419699767|ref|ZP_14227379.1| 30S ribosomal protein S1 [Escherichia coli SCI-07]
gi|419804113|ref|ZP_14329276.1| 30S ribosomal protein S1 [Escherichia coli AI27]
gi|419809435|ref|ZP_14334320.1| 30S ribosomal protein S1 [Escherichia coli O32:H37 str. P4]
gi|419864950|ref|ZP_14387345.1| 30S ribosomal protein S1 [Escherichia coli O103:H25 str. CVM9340]
gi|419873148|ref|ZP_14395152.1| 30S ribosomal protein S1 [Escherichia coli O103:H2 str. CVM9450]
gi|419873429|ref|ZP_14395420.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9534]
gi|419886070|ref|ZP_14406723.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9545]
gi|419889489|ref|ZP_14409885.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9570]
gi|419894663|ref|ZP_14414559.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9574]
gi|419899728|ref|ZP_14419220.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9942]
gi|419909191|ref|ZP_14427814.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10026]
gi|419911764|ref|ZP_14430233.1| 30S ribosomal protein S1 [Escherichia coli KD1]
gi|419918038|ref|ZP_14436255.1| 30S ribosomal protein S1 [Escherichia coli KD2]
gi|419925677|ref|ZP_14443509.1| 30S ribosomal protein S1 [Escherichia coli 541-15]
gi|419928616|ref|ZP_14446324.1| 30S ribosomal protein S1 [Escherichia coli 541-1]
gi|419936143|ref|ZP_14453169.1| 30S ribosomal protein S1 [Escherichia coli 576-1]
gi|419940911|ref|ZP_14457628.1| 30S ribosomal protein S1 [Escherichia coli 75]
gi|419945116|ref|ZP_14461571.1| 30S ribosomal protein S1 [Escherichia coli HM605]
gi|419952028|ref|ZP_14468205.1| 30S ribosomal protein S1 [Escherichia coli CUMT8]
gi|420088702|ref|ZP_14600562.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9602]
gi|420098124|ref|ZP_14609405.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9634]
gi|420105602|ref|ZP_14616072.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9455]
gi|420107373|ref|ZP_14617717.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9553]
gi|420117598|ref|ZP_14626953.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10021]
gi|420124133|ref|ZP_14633003.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10030]
gi|420129705|ref|ZP_14638231.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10224]
gi|420133138|ref|ZP_14641408.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9952]
gi|420268067|ref|ZP_14770471.1| ribosomal protein S1 [Escherichia coli PA22]
gi|420274011|ref|ZP_14776342.1| ribosomal protein S1 [Escherichia coli PA40]
gi|420279395|ref|ZP_14781660.1| ribosomal protein S1 [Escherichia coli TW06591]
gi|420285481|ref|ZP_14787696.1| ribosomal protein S1 [Escherichia coli TW10246]
gi|420291126|ref|ZP_14793289.1| ribosomal protein S1 [Escherichia coli TW11039]
gi|420296918|ref|ZP_14799010.1| ribosomal protein S1 [Escherichia coli TW09109]
gi|420302925|ref|ZP_14804951.1| ribosomal protein S1 [Escherichia coli TW10119]
gi|420308360|ref|ZP_14810331.1| ribosomal protein S1 [Escherichia coli EC1738]
gi|420313931|ref|ZP_14815836.1| ribosomal protein S1 [Escherichia coli EC1734]
gi|420319444|ref|ZP_14821293.1| ribosomal protein S1 [Shigella flexneri 2850-71]
gi|420326259|ref|ZP_14828011.1| ribosomal protein S1 [Shigella flexneri CCH060]
gi|420330257|ref|ZP_14831948.1| ribosomal protein S1 [Shigella flexneri K-1770]
gi|420335140|ref|ZP_14836756.1| ribosomal protein S1 [Shigella flexneri K-315]
gi|420340642|ref|ZP_14842157.1| ribosomal protein S1 [Shigella flexneri K-404]
gi|420347794|ref|ZP_14849189.1| ribosomal protein S1 [Shigella boydii 965-58]
gi|420351683|ref|ZP_14852867.1| ribosomal protein S1 [Shigella boydii 4444-74]
gi|420357680|ref|ZP_14858686.1| ribosomal protein S1 [Shigella sonnei 3226-85]
gi|420362632|ref|ZP_14863547.1| ribosomal protein S1 [Shigella sonnei 4822-66]
gi|420380909|ref|ZP_14880364.1| ribosomal protein S1 [Shigella dysenteriae 225-75]
gi|420384540|ref|ZP_14883924.1| ribosomal protein S1 [Escherichia coli EPECa12]
gi|420390383|ref|ZP_14889650.1| ribosomal protein S1 [Escherichia coli EPEC C342-62]
gi|421683182|ref|ZP_16122978.1| ribosomal protein S1 [Shigella flexneri 1485-80]
gi|421775852|ref|ZP_16212459.1| 30S ribosomal protein S1 [Escherichia coli AD30]
gi|421813016|ref|ZP_16248740.1| ribosomal protein S1 [Escherichia coli 8.0416]
gi|421817273|ref|ZP_16252827.1| ribosomal protein S1 [Escherichia coli 10.0821]
gi|421822678|ref|ZP_16258114.1| ribosomal protein S1 [Escherichia coli FRIK920]
gi|421829414|ref|ZP_16264741.1| ribosomal protein S1 [Escherichia coli PA7]
gi|422352949|ref|ZP_16433717.1| ribosomal protein S1 [Escherichia coli MS 117-3]
gi|422358660|ref|ZP_16439311.1| ribosomal protein S1 [Escherichia coli MS 110-3]
gi|422366085|ref|ZP_16446560.1| ribosomal protein S1 [Escherichia coli MS 153-1]
gi|422372026|ref|ZP_16452394.1| ribosomal protein S1 [Escherichia coli MS 16-3]
gi|422375728|ref|ZP_16455991.1| ribosomal protein S1 [Escherichia coli MS 60-1]
gi|422378902|ref|ZP_16459105.1| ribosomal protein S1 [Escherichia coli MS 57-2]
gi|422748039|ref|ZP_16801952.1| ribosomal protein S1 [Escherichia coli H252]
gi|422753533|ref|ZP_16807360.1| ribosomal protein S1 [Escherichia coli H263]
gi|422763017|ref|ZP_16816773.1| ribosomal protein S1 [Escherichia coli E1167]
gi|422765484|ref|ZP_16819211.1| ribosomal protein S1 [Escherichia coli E1520]
gi|422770144|ref|ZP_16823835.1| ribosomal protein S1 [Escherichia coli E482]
gi|422775267|ref|ZP_16828923.1| ribosomal protein S1 [Escherichia coli H120]
gi|422782251|ref|ZP_16835036.1| ribosomal protein S1 [Escherichia coli TW10509]
gi|422785503|ref|ZP_16838242.1| ribosomal protein S1 [Escherichia coli H489]
gi|422790390|ref|ZP_16843095.1| ribosomal protein S1 [Escherichia coli TA007]
gi|422800275|ref|ZP_16848773.1| ribosomal protein S1 [Escherichia coli M863]
gi|422819939|ref|ZP_16868149.1| 30S ribosomal protein S1 [Escherichia coli M919]
gi|422828815|ref|ZP_16876985.1| 30S ribosomal protein S1 [Escherichia coli B093]
gi|422833113|ref|ZP_16881180.1| 30S ribosomal protein S1 [Escherichia coli E101]
gi|422839392|ref|ZP_16887364.1| 30S ribosomal protein S1 [Escherichia coli H397]
gi|422958917|ref|ZP_16970848.1| 30S ribosomal protein S1 [Escherichia coli H494]
gi|422970815|ref|ZP_16974327.1| 30S ribosomal protein S1 [Escherichia coli TA124]
gi|422991645|ref|ZP_16982416.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C227-11]
gi|422993587|ref|ZP_16984351.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C236-11]
gi|422998798|ref|ZP_16989554.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 09-7901]
gi|423007259|ref|ZP_16998002.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 04-8351]
gi|423008905|ref|ZP_16999643.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-3677]
gi|423023093|ref|ZP_17013796.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4404]
gi|423028245|ref|ZP_17018938.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4522]
gi|423034079|ref|ZP_17024763.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4623]
gi|423036945|ref|ZP_17027619.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423042064|ref|ZP_17032731.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048754|ref|ZP_17039411.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423052336|ref|ZP_17041144.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423059302|ref|ZP_17048098.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423665438|ref|ZP_17640576.1| ribosomal protein S1 [Escherichia coli PA31]
gi|423701758|ref|ZP_17676217.1| 30S ribosomal protein S1 [Escherichia coli H730]
gi|423708832|ref|ZP_17683210.1| 30S ribosomal protein S1 [Escherichia coli B799]
gi|424075864|ref|ZP_17813202.1| ribosomal protein S1 [Escherichia coli FDA505]
gi|424082212|ref|ZP_17819063.1| ribosomal protein S1 [Escherichia coli FDA517]
gi|424088859|ref|ZP_17825104.1| ribosomal protein S1 [Escherichia coli FRIK1996]
gi|424095063|ref|ZP_17830806.1| ribosomal protein S1 [Escherichia coli FRIK1985]
gi|424101506|ref|ZP_17836648.1| ribosomal protein S1 [Escherichia coli FRIK1990]
gi|424108256|ref|ZP_17842822.1| ribosomal protein S1 [Escherichia coli 93-001]
gi|424116434|ref|ZP_17850298.1| ribosomal protein S1 [Escherichia coli PA3]
gi|424120318|ref|ZP_17854009.1| ribosomal protein S1 [Escherichia coli PA5]
gi|424126547|ref|ZP_17859742.1| ribosomal protein S1 [Escherichia coli PA9]
gi|424132653|ref|ZP_17865444.1| ribosomal protein S1 [Escherichia coli PA10]
gi|424139197|ref|ZP_17871481.1| ribosomal protein S1 [Escherichia coli PA14]
gi|424145637|ref|ZP_17877396.1| ribosomal protein S1 [Escherichia coli PA15]
gi|424151773|ref|ZP_17883017.1| ribosomal protein S1 [Escherichia coli PA24]
gi|424190261|ref|ZP_17888454.1| ribosomal protein S1 [Escherichia coli PA25]
gi|424271831|ref|ZP_17894362.1| ribosomal protein S1 [Escherichia coli PA28]
gi|424425924|ref|ZP_17900089.1| ribosomal protein S1 [Escherichia coli PA32]
gi|424454186|ref|ZP_17905710.1| ribosomal protein S1 [Escherichia coli PA33]
gi|424460518|ref|ZP_17911424.1| ribosomal protein S1 [Escherichia coli PA39]
gi|424466970|ref|ZP_17917148.1| ribosomal protein S1 [Escherichia coli PA41]
gi|424473529|ref|ZP_17923189.1| ribosomal protein S1 [Escherichia coli PA42]
gi|424479460|ref|ZP_17928699.1| ribosomal protein S1 [Escherichia coli TW07945]
gi|424485534|ref|ZP_17934387.1| ribosomal protein S1 [Escherichia coli TW09098]
gi|424491734|ref|ZP_17940060.1| ribosomal protein S1 [Escherichia coli TW09195]
gi|424498749|ref|ZP_17946011.1| ribosomal protein S1 [Escherichia coli EC4203]
gi|424507322|ref|ZP_17953752.1| ribosomal protein S1 [Escherichia coli EC4196]
gi|424511244|ref|ZP_17957451.1| ribosomal protein S1 [Escherichia coli TW14313]
gi|424518769|ref|ZP_17963193.1| ribosomal protein S1 [Escherichia coli TW14301]
gi|424524630|ref|ZP_17968643.1| ribosomal protein S1 [Escherichia coli EC4421]
gi|424530835|ref|ZP_17974450.1| ribosomal protein S1 [Escherichia coli EC4422]
gi|424536809|ref|ZP_17980059.1| ribosomal protein S1 [Escherichia coli EC4013]
gi|424542743|ref|ZP_17985537.1| ribosomal protein S1 [Escherichia coli EC4402]
gi|424549049|ref|ZP_17991237.1| ribosomal protein S1 [Escherichia coli EC4439]
gi|424555294|ref|ZP_17997006.1| ribosomal protein S1 [Escherichia coli EC4436]
gi|424561649|ref|ZP_18002929.1| ribosomal protein S1 [Escherichia coli EC4437]
gi|424567689|ref|ZP_18008592.1| ribosomal protein S1 [Escherichia coli EC4448]
gi|424573874|ref|ZP_18014283.1| ribosomal protein S1 [Escherichia coli EC1845]
gi|424579820|ref|ZP_18019741.1| ribosomal protein S1 [Escherichia coli EC1863]
gi|424749582|ref|ZP_18177679.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424755943|ref|ZP_18183787.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424769358|ref|ZP_18196585.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424837376|ref|ZP_18262013.1| 30S ribosomal protein S1 [Shigella flexneri 5a str. M90T]
gi|425096494|ref|ZP_18499506.1| ribosomal protein S1 [Escherichia coli 3.4870]
gi|425102639|ref|ZP_18505277.1| ribosomal protein S1 [Escherichia coli 5.2239]
gi|425108440|ref|ZP_18510678.1| ribosomal protein S1 [Escherichia coli 6.0172]
gi|425114274|ref|ZP_18516095.1| ribosomal protein S1 [Escherichia coli 8.0566]
gi|425118983|ref|ZP_18520704.1| ribosomal protein S1 [Escherichia coli 8.0569]
gi|425126615|ref|ZP_18527811.1| ribosomal protein S1 [Escherichia coli 8.0586]
gi|425130304|ref|ZP_18531393.1| ribosomal protein S1 [Escherichia coli 8.2524]
gi|425136670|ref|ZP_18537384.1| ribosomal protein S1 [Escherichia coli 10.0833]
gi|425142509|ref|ZP_18542796.1| ribosomal protein S1 [Escherichia coli 10.0869]
gi|425148859|ref|ZP_18548736.1| ribosomal protein S1 [Escherichia coli 88.0221]
gi|425154462|ref|ZP_18554004.1| ribosomal protein S1 [Escherichia coli PA34]
gi|425160910|ref|ZP_18560081.1| ribosomal protein S1 [Escherichia coli FDA506]
gi|425166438|ref|ZP_18565239.1| ribosomal protein S1 [Escherichia coli FDA507]
gi|425172724|ref|ZP_18571113.1| ribosomal protein S1 [Escherichia coli FDA504]
gi|425178614|ref|ZP_18576655.1| ribosomal protein S1 [Escherichia coli FRIK1999]
gi|425184772|ref|ZP_18582385.1| ribosomal protein S1 [Escherichia coli FRIK1997]
gi|425191579|ref|ZP_18588694.1| ribosomal protein S1 [Escherichia coli NE1487]
gi|425197860|ref|ZP_18594501.1| ribosomal protein S1 [Escherichia coli NE037]
gi|425204537|ref|ZP_18600657.1| ribosomal protein S1 [Escherichia coli FRIK2001]
gi|425210245|ref|ZP_18605971.1| ribosomal protein S1 [Escherichia coli PA4]
gi|425216299|ref|ZP_18611604.1| ribosomal protein S1 [Escherichia coli PA23]
gi|425222880|ref|ZP_18617722.1| ribosomal protein S1 [Escherichia coli PA49]
gi|425229105|ref|ZP_18623488.1| ribosomal protein S1 [Escherichia coli PA45]
gi|425235410|ref|ZP_18629364.1| ribosomal protein S1 [Escherichia coli TT12B]
gi|425241427|ref|ZP_18635055.1| ribosomal protein S1 [Escherichia coli MA6]
gi|425247534|ref|ZP_18640729.1| ribosomal protein S1 [Escherichia coli 5905]
gi|425253290|ref|ZP_18646148.1| ribosomal protein S1 [Escherichia coli CB7326]
gi|425259544|ref|ZP_18651903.1| ribosomal protein S1 [Escherichia coli EC96038]
gi|425265749|ref|ZP_18657650.1| ribosomal protein S1 [Escherichia coli 5412]
gi|425271701|ref|ZP_18663194.1| ribosomal protein S1 [Escherichia coli TW15901]
gi|425276852|ref|ZP_18668177.1| ribosomal protein S1 [Escherichia coli ARS4.2123]
gi|425282326|ref|ZP_18673429.1| ribosomal protein S1 [Escherichia coli TW00353]
gi|425287443|ref|ZP_18678366.1| ribosomal protein S1 [Escherichia coli 3006]
gi|425293132|ref|ZP_18683696.1| ribosomal protein S1 [Escherichia coli PA38]
gi|425299260|ref|ZP_18689302.1| ribosomal protein S1 [Escherichia coli 07798]
gi|425305785|ref|ZP_18695496.1| ribosomal protein S1 [Escherichia coli N1]
gi|425309860|ref|ZP_18699314.1| ribosomal protein S1 [Escherichia coli EC1735]
gi|425315785|ref|ZP_18704847.1| ribosomal protein S1 [Escherichia coli EC1736]
gi|425321853|ref|ZP_18710509.1| ribosomal protein S1 [Escherichia coli EC1737]
gi|425328044|ref|ZP_18716248.1| ribosomal protein S1 [Escherichia coli EC1846]
gi|425334229|ref|ZP_18721929.1| ribosomal protein S1 [Escherichia coli EC1847]
gi|425340641|ref|ZP_18727866.1| ribosomal protein S1 [Escherichia coli EC1848]
gi|425346505|ref|ZP_18733296.1| ribosomal protein S1 [Escherichia coli EC1849]
gi|425352741|ref|ZP_18739105.1| ribosomal protein S1 [Escherichia coli EC1850]
gi|425358730|ref|ZP_18744687.1| ribosomal protein S1 [Escherichia coli EC1856]
gi|425364849|ref|ZP_18750372.1| ribosomal protein S1 [Escherichia coli EC1862]
gi|425371292|ref|ZP_18756238.1| ribosomal protein S1 [Escherichia coli EC1864]
gi|425377822|ref|ZP_18762188.1| ribosomal protein S1 [Escherichia coli EC1865]
gi|425384083|ref|ZP_18767946.1| ribosomal protein S1 [Escherichia coli EC1866]
gi|425390776|ref|ZP_18774215.1| ribosomal protein S1 [Escherichia coli EC1868]
gi|425396892|ref|ZP_18779921.1| ribosomal protein S1 [Escherichia coli EC1869]
gi|425402879|ref|ZP_18785470.1| ribosomal protein S1 [Escherichia coli EC1870]
gi|425409431|ref|ZP_18791568.1| ribosomal protein S1 [Escherichia coli NE098]
gi|425415700|ref|ZP_18797320.1| ribosomal protein S1 [Escherichia coli FRIK523]
gi|425421506|ref|ZP_18802713.1| ribosomal protein S1 [Escherichia coli 0.1288]
gi|425426833|ref|ZP_18807872.1| ribosomal protein S1 [Escherichia coli 0.1304]
gi|427804067|ref|ZP_18971134.1| 30S ribosomal subunit protein S1 [Escherichia coli chi7122]
gi|427808649|ref|ZP_18975714.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|428945531|ref|ZP_19018143.1| ribosomal protein S1 [Escherichia coli 88.1467]
gi|428951664|ref|ZP_19023769.1| ribosomal protein S1 [Escherichia coli 88.1042]
gi|428957525|ref|ZP_19029191.1| ribosomal protein S1 [Escherichia coli 89.0511]
gi|428963866|ref|ZP_19035027.1| ribosomal protein S1 [Escherichia coli 90.0091]
gi|428970075|ref|ZP_19040688.1| ribosomal protein S1 [Escherichia coli 90.0039]
gi|428976431|ref|ZP_19046584.1| ribosomal protein S1 [Escherichia coli 90.2281]
gi|428982151|ref|ZP_19051868.1| ribosomal protein S1 [Escherichia coli 93.0055]
gi|428988455|ref|ZP_19057722.1| ribosomal protein S1 [Escherichia coli 93.0056]
gi|428994257|ref|ZP_19063148.1| ribosomal protein S1 [Escherichia coli 94.0618]
gi|429000398|ref|ZP_19068882.1| ribosomal protein S1 [Escherichia coli 95.0183]
gi|429006585|ref|ZP_19074469.1| ribosomal protein S1 [Escherichia coli 95.1288]
gi|429012914|ref|ZP_19080149.1| ribosomal protein S1 [Escherichia coli 95.0943]
gi|429019138|ref|ZP_19085903.1| ribosomal protein S1 [Escherichia coli 96.0428]
gi|429024835|ref|ZP_19091224.1| ribosomal protein S1 [Escherichia coli 96.0427]
gi|429033367|ref|ZP_19098909.1| ribosomal protein S1 [Escherichia coli 96.0939]
gi|429039468|ref|ZP_19104601.1| ribosomal protein S1 [Escherichia coli 96.0932]
gi|429043253|ref|ZP_19108232.1| ribosomal protein S1 [Escherichia coli 96.0107]
gi|429049019|ref|ZP_19113670.1| ribosomal protein S1 [Escherichia coli 97.0003]
gi|429053240|ref|ZP_19117776.1| ribosomal protein S1 [Escherichia coli 97.1742]
gi|429060059|ref|ZP_19124189.1| ribosomal protein S1 [Escherichia coli 97.0007]
gi|429065585|ref|ZP_19129424.1| ribosomal protein S1 [Escherichia coli 99.0672]
gi|429072085|ref|ZP_19135431.1| ribosomal protein S1 [Escherichia coli 99.0678]
gi|429077413|ref|ZP_19140620.1| ribosomal protein S1 [Escherichia coli 99.0713]
gi|429723136|ref|ZP_19258025.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9450]
gi|429775310|ref|ZP_19307308.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02030]
gi|429780499|ref|ZP_19312448.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02033-1]
gi|429784550|ref|ZP_19316459.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02092]
gi|429789887|ref|ZP_19321759.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02093]
gi|429796117|ref|ZP_19327940.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02281]
gi|429802042|ref|ZP_19333817.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02318]
gi|429805674|ref|ZP_19337418.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02913]
gi|429811270|ref|ZP_19342969.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03439]
gi|429816621|ref|ZP_19348277.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-04080]
gi|429821831|ref|ZP_19353442.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03943]
gi|429824656|ref|ZP_19356126.1| ribosomal protein S1 [Escherichia coli 96.0109]
gi|429831017|ref|ZP_19361826.1| ribosomal protein S1 [Escherichia coli 97.0010]
gi|429907498|ref|ZP_19373466.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911700|ref|ZP_19377656.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9941]
gi|429917534|ref|ZP_19383474.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4984]
gi|429922572|ref|ZP_19388493.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5604]
gi|429923425|ref|ZP_19389341.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4986]
gi|429932320|ref|ZP_19398214.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933922|ref|ZP_19399812.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4988]
gi|429939581|ref|ZP_19405455.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5603]
gi|429947223|ref|ZP_19413078.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949855|ref|ZP_19415703.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0465]
gi|429958133|ref|ZP_19423962.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0466]
gi|432352875|ref|ZP_19596158.1| 30S ribosomal protein S1 [Escherichia coli KTE2]
gi|432357245|ref|ZP_19600489.1| 30S ribosomal protein S1 [Escherichia coli KTE4]
gi|432361670|ref|ZP_19604854.1| 30S ribosomal protein S1 [Escherichia coli KTE5]
gi|432368968|ref|ZP_19612069.1| 30S ribosomal protein S1 [Escherichia coli KTE10]
gi|432376022|ref|ZP_19619030.1| 30S ribosomal protein S1 [Escherichia coli KTE12]
gi|432380541|ref|ZP_19623493.1| 30S ribosomal protein S1 [Escherichia coli KTE15]
gi|432386409|ref|ZP_19629305.1| 30S ribosomal protein S1 [Escherichia coli KTE16]
gi|432390942|ref|ZP_19633800.1| 30S ribosomal protein S1 [Escherichia coli KTE21]
gi|432396791|ref|ZP_19639576.1| 30S ribosomal protein S1 [Escherichia coli KTE25]
gi|432401108|ref|ZP_19643862.1| 30S ribosomal protein S1 [Escherichia coli KTE26]
gi|432405723|ref|ZP_19648443.1| 30S ribosomal protein S1 [Escherichia coli KTE28]
gi|432410908|ref|ZP_19653589.1| 30S ribosomal protein S1 [Escherichia coli KTE39]
gi|432415897|ref|ZP_19658521.1| 30S ribosomal protein S1 [Escherichia coli KTE44]
gi|432421026|ref|ZP_19663581.1| 30S ribosomal protein S1 [Escherichia coli KTE178]
gi|432425165|ref|ZP_19667680.1| 30S ribosomal protein S1 [Escherichia coli KTE181]
gi|432430956|ref|ZP_19673399.1| 30S ribosomal protein S1 [Escherichia coli KTE187]
gi|432435484|ref|ZP_19677883.1| 30S ribosomal protein S1 [Escherichia coli KTE188]
gi|432440291|ref|ZP_19682640.1| 30S ribosomal protein S1 [Escherichia coli KTE189]
gi|432445398|ref|ZP_19687704.1| 30S ribosomal protein S1 [Escherichia coli KTE191]
gi|432453684|ref|ZP_19695921.1| 30S ribosomal protein S1 [Escherichia coli KTE193]
gi|432455771|ref|ZP_19697970.1| 30S ribosomal protein S1 [Escherichia coli KTE201]
gi|432459937|ref|ZP_19702093.1| 30S ribosomal protein S1 [Escherichia coli KTE204]
gi|432470275|ref|ZP_19712327.1| 30S ribosomal protein S1 [Escherichia coli KTE206]
gi|432475027|ref|ZP_19717033.1| 30S ribosomal protein S1 [Escherichia coli KTE208]
gi|432480286|ref|ZP_19722247.1| 30S ribosomal protein S1 [Escherichia coli KTE210]
gi|432484604|ref|ZP_19726524.1| 30S ribosomal protein S1 [Escherichia coli KTE212]
gi|432488559|ref|ZP_19730443.1| 30S ribosomal protein S1 [Escherichia coli KTE213]
gi|432494709|ref|ZP_19736525.1| 30S ribosomal protein S1 [Escherichia coli KTE214]
gi|432499172|ref|ZP_19740944.1| 30S ribosomal protein S1 [Escherichia coli KTE216]
gi|432503548|ref|ZP_19745283.1| 30S ribosomal protein S1 [Escherichia coli KTE220]
gi|432513153|ref|ZP_19750388.1| 30S ribosomal protein S1 [Escherichia coli KTE224]
gi|432521607|ref|ZP_19758762.1| 30S ribosomal protein S1 [Escherichia coli KTE228]
gi|432522993|ref|ZP_19760130.1| 30S ribosomal protein S1 [Escherichia coli KTE230]
gi|432530245|ref|ZP_19767285.1| 30S ribosomal protein S1 [Escherichia coli KTE233]
gi|432533138|ref|ZP_19770129.1| 30S ribosomal protein S1 [Escherichia coli KTE234]
gi|432536972|ref|ZP_19773889.1| 30S ribosomal protein S1 [Escherichia coli KTE235]
gi|432542295|ref|ZP_19779151.1| 30S ribosomal protein S1 [Escherichia coli KTE236]
gi|432547765|ref|ZP_19784552.1| 30S ribosomal protein S1 [Escherichia coli KTE237]
gi|432552911|ref|ZP_19789640.1| 30S ribosomal protein S1 [Escherichia coli KTE47]
gi|432557992|ref|ZP_19794680.1| 30S ribosomal protein S1 [Escherichia coli KTE49]
gi|432562910|ref|ZP_19799530.1| 30S ribosomal protein S1 [Escherichia coli KTE51]
gi|432567922|ref|ZP_19804444.1| 30S ribosomal protein S1 [Escherichia coli KTE53]
gi|432572892|ref|ZP_19809382.1| 30S ribosomal protein S1 [Escherichia coli KTE55]
gi|432579608|ref|ZP_19816039.1| 30S ribosomal protein S1 [Escherichia coli KTE56]
gi|432587179|ref|ZP_19823546.1| 30S ribosomal protein S1 [Escherichia coli KTE58]
gi|432591959|ref|ZP_19828286.1| 30S ribosomal protein S1 [Escherichia coli KTE60]
gi|432596793|ref|ZP_19833074.1| 30S ribosomal protein S1 [Escherichia coli KTE62]
gi|432601448|ref|ZP_19837695.1| 30S ribosomal protein S1 [Escherichia coli KTE66]
gi|432606726|ref|ZP_19842919.1| 30S ribosomal protein S1 [Escherichia coli KTE67]
gi|432610584|ref|ZP_19846755.1| 30S ribosomal protein S1 [Escherichia coli KTE72]
gi|432615779|ref|ZP_19851905.1| 30S ribosomal protein S1 [Escherichia coli KTE75]
gi|432621049|ref|ZP_19857090.1| 30S ribosomal protein S1 [Escherichia coli KTE76]
gi|432626516|ref|ZP_19862497.1| 30S ribosomal protein S1 [Escherichia coli KTE77]
gi|432630533|ref|ZP_19866477.1| 30S ribosomal protein S1 [Escherichia coli KTE80]
gi|432636184|ref|ZP_19872066.1| 30S ribosomal protein S1 [Escherichia coli KTE81]
gi|432640135|ref|ZP_19875974.1| 30S ribosomal protein S1 [Escherichia coli KTE83]
gi|432645341|ref|ZP_19881140.1| 30S ribosomal protein S1 [Escherichia coli KTE86]
gi|432650368|ref|ZP_19886128.1| 30S ribosomal protein S1 [Escherichia coli KTE87]
gi|432655179|ref|ZP_19890890.1| 30S ribosomal protein S1 [Escherichia coli KTE93]
gi|432660138|ref|ZP_19895788.1| 30S ribosomal protein S1 [Escherichia coli KTE111]
gi|432665204|ref|ZP_19900788.1| 30S ribosomal protein S1 [Escherichia coli KTE116]
gi|432669856|ref|ZP_19905396.1| 30S ribosomal protein S1 [Escherichia coli KTE119]
gi|432673909|ref|ZP_19909397.1| 30S ribosomal protein S1 [Escherichia coli KTE142]
gi|432679403|ref|ZP_19914797.1| 30S ribosomal protein S1 [Escherichia coli KTE143]
gi|432690835|ref|ZP_19926074.1| 30S ribosomal protein S1 [Escherichia coli KTE161]
gi|432693659|ref|ZP_19928870.1| 30S ribosomal protein S1 [Escherichia coli KTE162]
gi|432698265|ref|ZP_19933431.1| 30S ribosomal protein S1 [Escherichia coli KTE169]
gi|432703482|ref|ZP_19938601.1| 30S ribosomal protein S1 [Escherichia coli KTE171]
gi|432709776|ref|ZP_19944841.1| 30S ribosomal protein S1 [Escherichia coli KTE6]
gi|432712565|ref|ZP_19947614.1| 30S ribosomal protein S1 [Escherichia coli KTE8]
gi|432717965|ref|ZP_19952949.1| 30S ribosomal protein S1 [Escherichia coli KTE9]
gi|432722418|ref|ZP_19957341.1| 30S ribosomal protein S1 [Escherichia coli KTE17]
gi|432727006|ref|ZP_19961887.1| 30S ribosomal protein S1 [Escherichia coli KTE18]
gi|432731624|ref|ZP_19966460.1| 30S ribosomal protein S1 [Escherichia coli KTE45]
gi|432736411|ref|ZP_19971182.1| 30S ribosomal protein S1 [Escherichia coli KTE42]
gi|432740692|ref|ZP_19975413.1| 30S ribosomal protein S1 [Escherichia coli KTE23]
gi|432744883|ref|ZP_19979582.1| 30S ribosomal protein S1 [Escherichia coli KTE43]
gi|432749392|ref|ZP_19984004.1| 30S ribosomal protein S1 [Escherichia coli KTE29]
gi|432753666|ref|ZP_19988232.1| 30S ribosomal protein S1 [Escherichia coli KTE22]
gi|432758702|ref|ZP_19993202.1| 30S ribosomal protein S1 [Escherichia coli KTE46]
gi|432764233|ref|ZP_19998681.1| 30S ribosomal protein S1 [Escherichia coli KTE48]
gi|432769761|ref|ZP_20004113.1| 30S ribosomal protein S1 [Escherichia coli KTE50]
gi|432774110|ref|ZP_20008394.1| 30S ribosomal protein S1 [Escherichia coli KTE54]
gi|432777806|ref|ZP_20012056.1| 30S ribosomal protein S1 [Escherichia coli KTE59]
gi|432782792|ref|ZP_20016976.1| 30S ribosomal protein S1 [Escherichia coli KTE63]
gi|432786595|ref|ZP_20020759.1| 30S ribosomal protein S1 [Escherichia coli KTE65]
gi|432792130|ref|ZP_20026219.1| 30S ribosomal protein S1 [Escherichia coli KTE78]
gi|432798093|ref|ZP_20032117.1| 30S ribosomal protein S1 [Escherichia coli KTE79]
gi|432801232|ref|ZP_20035216.1| 30S ribosomal protein S1 [Escherichia coli KTE84]
gi|432805037|ref|ZP_20038978.1| 30S ribosomal protein S1 [Escherichia coli KTE91]
gi|432813016|ref|ZP_20046861.1| 30S ribosomal protein S1 [Escherichia coli KTE101]
gi|432814560|ref|ZP_20048350.1| 30S ribosomal protein S1 [Escherichia coli KTE115]
gi|432820171|ref|ZP_20053884.1| 30S ribosomal protein S1 [Escherichia coli KTE118]
gi|432830887|ref|ZP_20064469.1| 30S ribosomal protein S1 [Escherichia coli KTE135]
gi|432833992|ref|ZP_20067534.1| 30S ribosomal protein S1 [Escherichia coli KTE136]
gi|432838576|ref|ZP_20072065.1| 30S ribosomal protein S1 [Escherichia coli KTE140]
gi|432843282|ref|ZP_20076547.1| 30S ribosomal protein S1 [Escherichia coli KTE141]
gi|432849368|ref|ZP_20080590.1| 30S ribosomal protein S1 [Escherichia coli KTE144]
gi|432860711|ref|ZP_20085795.1| 30S ribosomal protein S1 [Escherichia coli KTE146]
gi|432874085|ref|ZP_20093222.1| 30S ribosomal protein S1 [Escherichia coli KTE147]
gi|432880646|ref|ZP_20097181.1| 30S ribosomal protein S1 [Escherichia coli KTE154]
gi|432885402|ref|ZP_20099923.1| 30S ribosomal protein S1 [Escherichia coli KTE158]
gi|432893643|ref|ZP_20105655.1| 30S ribosomal protein S1 [Escherichia coli KTE165]
gi|432897838|ref|ZP_20108669.1| 30S ribosomal protein S1 [Escherichia coli KTE192]
gi|432903547|ref|ZP_20112963.1| 30S ribosomal protein S1 [Escherichia coli KTE194]
gi|432911477|ref|ZP_20117752.1| 30S ribosomal protein S1 [Escherichia coli KTE190]
gi|432918129|ref|ZP_20122534.1| 30S ribosomal protein S1 [Escherichia coli KTE173]
gi|432925419|ref|ZP_20127448.1| 30S ribosomal protein S1 [Escherichia coli KTE175]
gi|432933476|ref|ZP_20133144.1| 30S ribosomal protein S1 [Escherichia coli KTE184]
gi|432942994|ref|ZP_20140118.1| 30S ribosomal protein S1 [Escherichia coli KTE183]
gi|432946217|ref|ZP_20141846.1| 30S ribosomal protein S1 [Escherichia coli KTE196]
gi|432954210|ref|ZP_20146329.1| 30S ribosomal protein S1 [Escherichia coli KTE197]
gi|432960488|ref|ZP_20150608.1| 30S ribosomal protein S1 [Escherichia coli KTE202]
gi|432967008|ref|ZP_20155924.1| 30S ribosomal protein S1 [Escherichia coli KTE203]
gi|432971073|ref|ZP_20159948.1| 30S ribosomal protein S1 [Escherichia coli KTE207]
gi|432977565|ref|ZP_20166388.1| 30S ribosomal protein S1 [Escherichia coli KTE209]
gi|432980380|ref|ZP_20169158.1| 30S ribosomal protein S1 [Escherichia coli KTE211]
gi|432984541|ref|ZP_20173277.1| 30S ribosomal protein S1 [Escherichia coli KTE215]
gi|432990005|ref|ZP_20178671.1| 30S ribosomal protein S1 [Escherichia coli KTE217]
gi|432994637|ref|ZP_20183251.1| 30S ribosomal protein S1 [Escherichia coli KTE218]
gi|432999055|ref|ZP_20187593.1| 30S ribosomal protein S1 [Escherichia coli KTE223]
gi|433004379|ref|ZP_20192817.1| 30S ribosomal protein S1 [Escherichia coli KTE227]
gi|433011634|ref|ZP_20200038.1| 30S ribosomal protein S1 [Escherichia coli KTE229]
gi|433013129|ref|ZP_20201503.1| 30S ribosomal protein S1 [Escherichia coli KTE104]
gi|433017888|ref|ZP_20206148.1| 30S ribosomal protein S1 [Escherichia coli KTE105]
gi|433022766|ref|ZP_20210778.1| 30S ribosomal protein S1 [Escherichia coli KTE106]
gi|433027936|ref|ZP_20215805.1| 30S ribosomal protein S1 [Escherichia coli KTE109]
gi|433032415|ref|ZP_20220187.1| 30S ribosomal protein S1 [Escherichia coli KTE112]
gi|433037953|ref|ZP_20225565.1| 30S ribosomal protein S1 [Escherichia coli KTE113]
gi|433042421|ref|ZP_20229941.1| 30S ribosomal protein S1 [Escherichia coli KTE117]
gi|433047049|ref|ZP_20234457.1| 30S ribosomal protein S1 [Escherichia coli KTE120]
gi|433052290|ref|ZP_20239514.1| 30S ribosomal protein S1 [Escherichia coli KTE122]
gi|433057200|ref|ZP_20244282.1| 30S ribosomal protein S1 [Escherichia coli KTE124]
gi|433062159|ref|ZP_20249113.1| 30S ribosomal protein S1 [Escherichia coli KTE125]
gi|433067170|ref|ZP_20253993.1| 30S ribosomal protein S1 [Escherichia coli KTE128]
gi|433077067|ref|ZP_20263628.1| 30S ribosomal protein S1 [Escherichia coli KTE131]
gi|433081838|ref|ZP_20268312.1| 30S ribosomal protein S1 [Escherichia coli KTE133]
gi|433086517|ref|ZP_20272911.1| 30S ribosomal protein S1 [Escherichia coli KTE137]
gi|433091240|ref|ZP_20277534.1| 30S ribosomal protein S1 [Escherichia coli KTE138]
gi|433095803|ref|ZP_20282013.1| 30S ribosomal protein S1 [Escherichia coli KTE139]
gi|433100422|ref|ZP_20286529.1| 30S ribosomal protein S1 [Escherichia coli KTE145]
gi|433105024|ref|ZP_20291040.1| 30S ribosomal protein S1 [Escherichia coli KTE148]
gi|433110230|ref|ZP_20296102.1| 30S ribosomal protein S1 [Escherichia coli KTE150]
gi|433114792|ref|ZP_20300605.1| 30S ribosomal protein S1 [Escherichia coli KTE153]
gi|433124455|ref|ZP_20310040.1| 30S ribosomal protein S1 [Escherichia coli KTE160]
gi|433129264|ref|ZP_20314730.1| 30S ribosomal protein S1 [Escherichia coli KTE163]
gi|433134088|ref|ZP_20319459.1| 30S ribosomal protein S1 [Escherichia coli KTE166]
gi|433138515|ref|ZP_20323797.1| 30S ribosomal protein S1 [Escherichia coli KTE167]
gi|433143535|ref|ZP_20328699.1| 30S ribosomal protein S1 [Escherichia coli KTE168]
gi|433148298|ref|ZP_20333361.1| 30S ribosomal protein S1 [Escherichia coli KTE174]
gi|433153006|ref|ZP_20337971.1| 30S ribosomal protein S1 [Escherichia coli KTE176]
gi|433157900|ref|ZP_20342763.1| 30S ribosomal protein S1 [Escherichia coli KTE177]
gi|433162749|ref|ZP_20347508.1| 30S ribosomal protein S1 [Escherichia coli KTE179]
gi|433167760|ref|ZP_20352425.1| 30S ribosomal protein S1 [Escherichia coli KTE180]
gi|433172741|ref|ZP_20357293.1| 30S ribosomal protein S1 [Escherichia coli KTE232]
gi|433177455|ref|ZP_20361902.1| 30S ribosomal protein S1 [Escherichia coli KTE82]
gi|433187698|ref|ZP_20371815.1| 30S ribosomal protein S1 [Escherichia coli KTE88]
gi|433192904|ref|ZP_20376915.1| 30S ribosomal protein S1 [Escherichia coli KTE90]
gi|433197515|ref|ZP_20381436.1| 30S ribosomal protein S1 [Escherichia coli KTE94]
gi|433202457|ref|ZP_20386254.1| 30S ribosomal protein S1 [Escherichia coli KTE95]
gi|433207025|ref|ZP_20390720.1| 30S ribosomal protein S1 [Escherichia coli KTE97]
gi|433211776|ref|ZP_20395387.1| 30S ribosomal protein S1 [Escherichia coli KTE99]
gi|433322245|ref|ZP_20399729.1| 30S ribosomal protein S1 [Escherichia coli J96]
gi|442595295|ref|ZP_21013144.1| SSU ribosomal protein S1p [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|442599784|ref|ZP_21017489.1| SSU ribosomal protein S1p [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|442606461|ref|ZP_21021261.1| SSU ribosomal protein S1p [Escherichia coli Nissle 1917]
gi|443617026|ref|YP_007380882.1| 30S ribosomal protein S1 [Escherichia coli APEC O78]
gi|444923362|ref|ZP_21243039.1| ribosomal protein S1 [Escherichia coli 09BKT078844]
gi|444929651|ref|ZP_21248790.1| ribosomal protein S1 [Escherichia coli 99.0814]
gi|444936752|ref|ZP_21255547.1| ribosomal protein S1 [Escherichia coli 99.0815]
gi|444942381|ref|ZP_21260917.1| ribosomal protein S1 [Escherichia coli 99.0816]
gi|444946123|ref|ZP_21264532.1| ribosomal protein S1 [Escherichia coli 99.0839]
gi|444951685|ref|ZP_21269896.1| ribosomal protein S1 [Escherichia coli 99.0848]
gi|444957153|ref|ZP_21275137.1| ribosomal protein S1 [Escherichia coli 99.1753]
gi|444962454|ref|ZP_21280188.1| ribosomal protein S1 [Escherichia coli 99.1775]
gi|444968162|ref|ZP_21285628.1| ribosomal protein S1 [Escherichia coli 99.1793]
gi|444973659|ref|ZP_21290926.1| ribosomal protein S1 [Escherichia coli 99.1805]
gi|444979336|ref|ZP_21296320.1| ribosomal protein S1 [Escherichia coli ATCC 700728]
gi|444984497|ref|ZP_21301356.1| ribosomal protein S1 [Escherichia coli PA11]
gi|444989744|ref|ZP_21306474.1| ribosomal protein S1 [Escherichia coli PA19]
gi|444996759|ref|ZP_21313270.1| ribosomal protein S1 [Escherichia coli PA13]
gi|445000622|ref|ZP_21317075.1| ribosomal protein S1 [Escherichia coli PA2]
gi|445006060|ref|ZP_21322390.1| ribosomal protein S1 [Escherichia coli PA47]
gi|445011172|ref|ZP_21327356.1| ribosomal protein S1 [Escherichia coli PA48]
gi|445018724|ref|ZP_21334700.1| ribosomal protein S1 [Escherichia coli PA8]
gi|445022440|ref|ZP_21338354.1| ribosomal protein S1 [Escherichia coli 7.1982]
gi|445027709|ref|ZP_21343474.1| ribosomal protein S1 [Escherichia coli 99.1781]
gi|445033201|ref|ZP_21348812.1| ribosomal protein S1 [Escherichia coli 99.1762]
gi|445038888|ref|ZP_21354349.1| ribosomal protein S1 [Escherichia coli PA35]
gi|445044193|ref|ZP_21359519.1| ribosomal protein S1 [Escherichia coli 3.4880]
gi|445049687|ref|ZP_21364839.1| ribosomal protein S1 [Escherichia coli 95.0083]
gi|445055346|ref|ZP_21370285.1| ribosomal protein S1 [Escherichia coli 99.0670]
gi|450187214|ref|ZP_21889735.1| 30S ribosomal protein S1 [Escherichia coli SEPT362]
gi|450212785|ref|ZP_21894638.1| 30S ribosomal protein S1 [Escherichia coli O08]
gi|450241046|ref|ZP_21899492.1| 30S ribosomal protein S1 [Escherichia coli S17]
gi|452967505|ref|ZP_21965732.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. EC4009]
gi|84028225|sp|P0AG69.1|RS1_ECO57 RecName: Full=30S ribosomal protein S1
gi|84028226|sp|P0AG68.1|RS1_ECOL6 RecName: Full=30S ribosomal protein S1
gi|84028227|sp|P0AG67.1|RS1_ECOLI RecName: Full=30S ribosomal protein S1
gi|84028228|sp|P0AG70.1|RS1_SHIFL RecName: Full=30S ribosomal protein S1
gi|12514077|gb|AAG55396.1|AE005280_7 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
EDL933]
gi|26107336|gb|AAN79519.1|AE016758_123 30S ribosomal protein S1 [Escherichia coli CFT073]
gi|1651439|dbj|BAA35655.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K12 substr.
W3110]
gi|1787140|gb|AAC73997.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. MG1655]
gi|13360453|dbj|BAB34417.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
Sakai]
gi|24051180|gb|AAN42537.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 301]
gi|30040692|gb|AAP16423.1| 30S ribosomal subunit protein S1 [Shigella flexneri 2a str. 2457T]
gi|73854945|gb|AAZ87652.1| 30S ribosomal subunit protein S1 [Shigella sonnei Ss046]
gi|81246061|gb|ABB66769.1| 30S ribosomal subunit protein S1 [Shigella boydii Sb227]
gi|91071586|gb|ABE06467.1| 30S ribosomal subunit protein S1 [Escherichia coli UTI89]
gi|110342700|gb|ABG68937.1| 30S ribosomal protein S1 [Escherichia coli 536]
gi|110614467|gb|ABF03134.1| 30S ribosomal subunit protein S1 [Shigella flexneri 5 str. 8401]
gi|115512253|gb|ABJ00328.1| RpsA [Escherichia coli APEC O1]
gi|157066113|gb|ABV05368.1| ribosomal protein S1 [Escherichia coli HS]
gi|157078847|gb|ABV18555.1| ribosomal protein S1 [Escherichia coli E24377A]
gi|169755615|gb|ACA78314.1| ribosomal protein S1 [Escherichia coli ATCC 8739]
gi|169888404|gb|ACB02111.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. DH10B]
gi|170121818|gb|EDS90749.1| ribosomal protein S1 [Escherichia albertii TW07627]
gi|170520409|gb|ACB18587.1| ribosomal protein S1 [Escherichia coli SMS-3-5]
gi|187430111|gb|ACD09385.1| ribosomal protein S1 [Shigella boydii CDC 3083-94]
gi|188014741|gb|EDU52863.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4113]
gi|188488831|gb|EDU63934.1| ribosomal protein S1 [Escherichia coli 53638]
gi|189355943|gb|EDU74362.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4401]
gi|189366807|gb|EDU85223.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4501]
gi|189372760|gb|EDU91176.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC869]
gi|189376455|gb|EDU94871.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC508]
gi|190907581|gb|EDV67176.1| ribosomal protein S1 [Escherichia coli F11]
gi|192927716|gb|EDV82331.1| ribosomal protein S1 [Escherichia coli E22]
gi|192955954|gb|EDV86422.1| ribosomal protein S1 [Escherichia coli E110019]
gi|194413618|gb|EDX29899.1| ribosomal protein S1 [Escherichia coli B171]
gi|194422382|gb|EDX38382.1| ribosomal protein S1 [Escherichia coli 101-1]
gi|208732123|gb|EDZ80811.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4045]
gi|208738290|gb|EDZ85973.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4042]
gi|209158872|gb|ACI36305.1| ribosomal protein S1 [Escherichia coli O157:H7 str. EC4115]
gi|209774868|gb|ACI85746.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774870|gb|ACI85747.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774872|gb|ACI85748.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774874|gb|ACI85749.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209774876|gb|ACI85750.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|209911420|dbj|BAG76494.1| 30S ribosomal protein S1 [Escherichia coli SE11]
gi|215264108|emb|CAS08452.1| 30S ribosomal subunit protein S1 [Escherichia coli O127:H6 str.
E2348/69]
gi|217322591|gb|EEC31015.1| ribosomal protein S1 [Escherichia coli O157:H7 str. TW14588]
gi|218351116|emb|CAU96820.1| 30S ribosomal subunit protein S1 [Escherichia coli 55989]
gi|218360266|emb|CAQ97816.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI1]
gi|218364585|emb|CAR02271.1| 30S ribosomal subunit protein S1 [Escherichia coli S88]
gi|218370556|emb|CAR18363.1| 30S ribosomal subunit protein S1 [Escherichia coli IAI39]
gi|218426315|emb|CAR07140.1| 30S ribosomal subunit protein S1 [Escherichia coli ED1a]
gi|218431435|emb|CAR12313.1| 30S ribosomal subunit protein S1 [Escherichia coli UMN026]
gi|222032642|emb|CAP75381.1| 30S ribosomal protein S1 [Escherichia coli LF82]
gi|226898311|gb|EEH84570.1| 30S ribosomal subunit protein S1 [Escherichia sp. 3_2_53FAA]
gi|227838876|gb|EEJ49342.1| 30S ribosomal protein S1 [Escherichia coli 83972]
gi|238859783|gb|ACR61781.1| 30S ribosomal subunit protein S1 [Escherichia coli BW2952]
gi|242376726|emb|CAQ31439.1| 30S ribosomal subunit protein S1, subunit of 30S ribosomal subunit
and ribosome [Escherichia coli BL21(DE3)]
gi|253325104|gb|ACT29706.1| ribosomal protein S1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972926|gb|ACT38597.1| 30S ribosomal protein S1 [Escherichia coli B str. REL606]
gi|253977140|gb|ACT42810.1| 30S ribosomal protein S1 [Escherichia coli BL21(DE3)]
gi|254591510|gb|ACT70871.1| 30S ribosomal subunit protein S1 [Escherichia coli O157:H7 str.
TW14359]
gi|257752851|dbj|BAI24353.1| 30S ribosomal subunit protein S1 [Escherichia coli O26:H11 str.
11368]
gi|257758308|dbj|BAI29805.1| 30S ribosomal subunit protein S1 [Escherichia coli O103:H2 str.
12009]
gi|257763439|dbj|BAI34934.1| 30S ribosomal subunit protein S1 [Escherichia coli O111:H- str.
11128]
gi|260449943|gb|ACX40365.1| ribosomal protein S1 [Escherichia coli DH1]
gi|281178042|dbj|BAI54372.1| 30S ribosomal protein S1 [Escherichia coli SE15]
gi|281600271|gb|ADA73255.1| 30S ribosomal protein S1 [Shigella flexneri 2002017]
gi|284920762|emb|CBG33825.1| 30S ribosomal protein S1 [Escherichia coli 042]
gi|290761785|gb|ADD55746.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. CB9615]
gi|291324027|gb|EFE63449.1| 30S ribosomal protein S1 [Escherichia coli B088]
gi|291428802|gb|EFF01827.1| 30S ribosomal protein S1 [Escherichia coli FVEC1412]
gi|291434249|gb|EFF07222.1| 30S ribosomal protein S1 [Escherichia coli B185]
gi|291469756|gb|EFF12240.1| 30S ribosomal protein S1 [Escherichia coli B354]
gi|294493114|gb|ADE91870.1| ribosomal protein S1 [Escherichia coli IHE3034]
gi|298279694|gb|EFI21202.1| 30S ribosomal protein S1 [Escherichia coli FVEC1302]
gi|299881246|gb|EFI89457.1| ribosomal protein S1 [Escherichia coli MS 196-1]
gi|300300289|gb|EFJ56674.1| ribosomal protein S1 [Escherichia coli MS 185-1]
gi|300306973|gb|EFJ61493.1| ribosomal protein S1 [Escherichia coli MS 200-1]
gi|300317664|gb|EFJ67448.1| ribosomal protein S1 [Escherichia coli MS 175-1]
gi|300354952|gb|EFJ70822.1| ribosomal protein S1 [Escherichia coli MS 198-1]
gi|300397275|gb|EFJ80813.1| ribosomal protein S1 [Escherichia coli MS 69-1]
gi|300405072|gb|EFJ88610.1| ribosomal protein S1 [Escherichia coli MS 84-1]
gi|300409641|gb|EFJ93179.1| ribosomal protein S1 [Escherichia coli MS 45-1]
gi|300411990|gb|EFJ95300.1| ribosomal protein S1 [Escherichia coli MS 115-1]
gi|300418481|gb|EFK01792.1| ribosomal protein S1 [Escherichia coli MS 182-1]
gi|300450875|gb|EFK14495.1| ribosomal protein S1 [Escherichia coli MS 116-1]
gi|300462443|gb|EFK25936.1| ribosomal protein S1 [Escherichia coli MS 187-1]
gi|300523851|gb|EFK44920.1| ribosomal protein S1 [Escherichia coli MS 119-7]
gi|300530337|gb|EFK51399.1| ribosomal protein S1 [Escherichia coli MS 107-1]
gi|300842320|gb|EFK70080.1| ribosomal protein S1 [Escherichia coli MS 124-1]
gi|300846705|gb|EFK74465.1| ribosomal protein S1 [Escherichia coli MS 78-1]
gi|301078145|gb|EFK92951.1| ribosomal protein S1 [Escherichia coli MS 146-1]
gi|305853399|gb|EFM53838.1| 30S ribosomal protein S1 [Escherichia coli NC101]
gi|306908257|gb|EFN38756.1| ribosomal protein S1 [Escherichia coli W]
gi|307552750|gb|ADN45525.1| 30S ribosomal protein [Escherichia coli ABU 83972]
gi|307627662|gb|ADN71966.1| 30S ribosomal protein S1 [Escherichia coli UM146]
gi|308121409|gb|EFO58671.1| ribosomal protein S1 [Escherichia coli MS 145-7]
gi|309701187|emb|CBJ00487.1| 30S ribosomal protein S1 [Escherichia coli ETEC H10407]
gi|310336800|gb|EFQ01967.1| ribosomal protein S1 [Escherichia coli 1827-70]
gi|312286425|gb|EFR14338.1| ribosomal protein S1 [Escherichia coli 2362-75]
gi|312945431|gb|ADR26258.1| 30S ribosomal protein S1 [Escherichia coli O83:H1 str. NRG 857C]
gi|313650850|gb|EFS15251.1| ribosomal protein S1 [Shigella flexneri 2a str. 2457T]
gi|315060196|gb|ADT74523.1| 30S ribosomal subunit protein S1 [Escherichia coli W]
gi|315135559|dbj|BAJ42718.1| 30S ribosomal protein S1 [Escherichia coli DH1]
gi|315257952|gb|EFU37920.1| ribosomal protein S1 [Escherichia coli MS 85-1]
gi|315287526|gb|EFU46937.1| ribosomal protein S1 [Escherichia coli MS 110-3]
gi|315291242|gb|EFU50602.1| ribosomal protein S1 [Escherichia coli MS 153-1]
gi|315296193|gb|EFU55501.1| ribosomal protein S1 [Escherichia coli MS 16-3]
gi|315619105|gb|EFU99685.1| ribosomal protein S1 [Escherichia coli 3431]
gi|320173252|gb|EFW48461.1| SSU ribosomal protein S1p [Shigella dysenteriae CDC 74-1112]
gi|320182021|gb|EFW56926.1| SSU ribosomal protein S1p [Shigella boydii ATCC 9905]
gi|320192603|gb|EFW67244.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. EC1212]
gi|320196595|gb|EFW71218.1| SSU ribosomal protein S1p [Escherichia coli WV_060327]
gi|320202307|gb|EFW76878.1| SSU ribosomal protein S1p [Escherichia coli EC4100B]
gi|320637779|gb|EFX07571.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. G5101]
gi|320642904|gb|EFX12105.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. 493-89]
gi|320648361|gb|EFX17016.1| 30S ribosomal protein S1 [Escherichia coli O157:H- str. H 2687]
gi|320653677|gb|EFX21751.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320659822|gb|EFX27378.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. USDA 5905]
gi|320664291|gb|EFX31442.1| 30S ribosomal protein S1 [Escherichia coli O157:H7 str. LSU-61]
gi|323157202|gb|EFZ43325.1| ribosomal protein S1 [Escherichia coli EPECa14]
gi|323159537|gb|EFZ45517.1| ribosomal protein S1 [Escherichia coli E128010]
gi|323165378|gb|EFZ51165.1| ribosomal protein S1 [Shigella sonnei 53G]
gi|323174988|gb|EFZ60603.1| ribosomal protein S1 [Escherichia coli LT-68]
gi|323175466|gb|EFZ61061.1| ribosomal protein S1 [Escherichia coli OK1180]
gi|323185383|gb|EFZ70747.1| ribosomal protein S1 [Escherichia coli OK1357]
gi|323190731|gb|EFZ76000.1| ribosomal protein S1 [Escherichia coli RN587/1]
gi|323379244|gb|ADX51512.1| ribosomal protein S1 [Escherichia coli KO11FL]
gi|323938017|gb|EGB34279.1| ribosomal protein S1 [Escherichia coli E1520]
gi|323942827|gb|EGB38992.1| ribosomal protein S1 [Escherichia coli E482]
gi|323947300|gb|EGB43308.1| ribosomal protein S1 [Escherichia coli H120]
gi|323953382|gb|EGB49248.1| ribosomal protein S1 [Escherichia coli H252]
gi|323958216|gb|EGB53925.1| ribosomal protein S1 [Escherichia coli H263]
gi|323962903|gb|EGB58477.1| ribosomal protein S1 [Escherichia coli H489]
gi|323967158|gb|EGB62582.1| ribosomal protein S1 [Escherichia coli M863]
gi|323973214|gb|EGB68406.1| ribosomal protein S1 [Escherichia coli TA007]
gi|323976702|gb|EGB71790.1| ribosomal protein S1 [Escherichia coli TW10509]
gi|324009837|gb|EGB79056.1| ribosomal protein S1 [Escherichia coli MS 57-2]
gi|324012971|gb|EGB82190.1| ribosomal protein S1 [Escherichia coli MS 60-1]
gi|324019080|gb|EGB88299.1| ribosomal protein S1 [Escherichia coli MS 117-3]
gi|324117224|gb|EGC11132.1| ribosomal protein S1 [Escherichia coli E1167]
gi|326338194|gb|EGD62023.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1125]
gi|326346171|gb|EGD69909.1| SSU ribosomal protein S1p [Escherichia coli O157:H7 str. 1044]
gi|327253701|gb|EGE65330.1| ribosomal protein S1 [Escherichia coli STEC_7v]
gi|330910691|gb|EGH39201.1| SSU ribosomal protein S1p [Escherichia coli AA86]
gi|331038235|gb|EGI10455.1| ribosomal protein S1 [Escherichia coli H736]
gi|331044928|gb|EGI17055.1| ribosomal protein S1 [Escherichia coli M605]
gi|331050209|gb|EGI22267.1| ribosomal protein S1 [Escherichia coli M718]
gi|331060746|gb|EGI32710.1| ribosomal protein S1 [Escherichia coli TA143]
gi|331065644|gb|EGI37537.1| ribosomal protein S1 [Escherichia coli TA271]
gi|331070356|gb|EGI41721.1| ribosomal protein S1 [Escherichia coli TA280]
gi|331075388|gb|EGI46686.1| ribosomal protein S1 [Escherichia coli H591]
gi|331080049|gb|EGI51228.1| ribosomal protein S1 [Escherichia coli H299]
gi|332091768|gb|EGI96847.1| ribosomal protein S1 [Shigella dysenteriae 155-74]
gi|332093268|gb|EGI98328.1| ribosomal protein S1 [Shigella boydii 5216-82]
gi|332093334|gb|EGI98392.1| ribosomal protein S1 [Shigella boydii 3594-74]
gi|332104536|gb|EGJ07882.1| ribosomal protein S1 [Shigella sp. D9]
gi|332342354|gb|AEE55688.1| ribosomal protein RpsA [Escherichia coli UMNK88]
gi|332758996|gb|EGJ89306.1| ribosomal protein S1 [Shigella flexneri 4343-70]
gi|332760108|gb|EGJ90406.1| ribosomal protein S1 [Shigella flexneri 2747-71]
gi|332762680|gb|EGJ92943.1| ribosomal protein S1 [Shigella flexneri K-671]
gi|332767858|gb|EGJ98048.1| ribosomal protein S1 [Shigella flexneri 2930-71]
gi|333006352|gb|EGK25860.1| ribosomal protein S1 [Shigella flexneri VA-6]
gi|333007009|gb|EGK26504.1| ribosomal protein S1 [Shigella flexneri K-218]
gi|333008889|gb|EGK28349.1| ribosomal protein S1 [Shigella flexneri K-272]
gi|333020060|gb|EGK39331.1| ribosomal protein S1 [Shigella flexneri K-304]
gi|333020199|gb|EGK39469.1| ribosomal protein S1 [Shigella flexneri K-227]
gi|333969015|gb|AEG35820.1| 30S ribosomal protein S1 [Escherichia coli NA114]
gi|335576443|gb|EGM62694.1| ribosomal protein S1 [Shigella flexneri J1713]
gi|338771045|gb|EGP25795.1| 30S ribosomal protein S1 [Escherichia coli PCN033]
gi|339413946|gb|AEJ55618.1| ribosomal protein S1 [Escherichia coli UMNF18]
gi|340735335|gb|EGR64393.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 01-09591]
gi|340741155|gb|EGR75305.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. LB226692]
gi|341917486|gb|EGT67102.1| hypothetical protein C22711_1130 [Escherichia coli O104:H4 str.
C227-11]
gi|342364389|gb|EGU28490.1| 30S ribosomal protein S1 [Escherichia coli XH140A]
gi|342929142|gb|EGU97864.1| ribosomal protein S1 [Escherichia coli MS 79-10]
gi|344195225|gb|EGV49295.1| 30S ribosomal protein S1 [Escherichia coli XH001]
gi|345339006|gb|EGW71432.1| ribosomal protein S1 [Escherichia coli STEC_C165-02]
gi|345342524|gb|EGW74918.1| ribosomal protein S1 [Escherichia coli STEC_B2F1]
gi|345344580|gb|EGW76947.1| ribosomal protein S1 [Escherichia coli 2534-86]
gi|345352690|gb|EGW84934.1| ribosomal protein S1 [Escherichia coli STEC_94C]
gi|345358674|gb|EGW90857.1| ribosomal protein S1 [Escherichia coli 3030-1]
gi|345363728|gb|EGW95869.1| ribosomal protein S1 [Escherichia coli STEC_DG131-3]
gi|345365358|gb|EGW97467.1| ribosomal protein S1 [Escherichia coli STEC_EH250]
gi|345378149|gb|EGX10080.1| ribosomal protein S1 [Escherichia coli STEC_MHI813]
gi|345380543|gb|EGX12442.1| ribosomal protein S1 [Escherichia coli G58-1]
gi|345384500|gb|EGX14362.1| ribosomal protein S1 [Escherichia coli STEC_H.1.8]
gi|345390260|gb|EGX20059.1| ribosomal protein S1 [Escherichia coli STEC_S1191]
gi|345394741|gb|EGX24495.1| ribosomal protein S1 [Escherichia coli TX1999]
gi|349737055|gb|AEQ11761.1| 30S ribosomal subunit protein S1 [Escherichia coli O7:K1 str. CE10]
gi|354856647|gb|EHF17105.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 04-8351]
gi|354857894|gb|EHF18347.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C227-11]
gi|354864662|gb|EHF25091.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. C236-11]
gi|354874975|gb|EHF35341.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 09-7901]
gi|354878935|gb|EHF39282.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4404]
gi|354882727|gb|EHF43049.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-3677]
gi|354884349|gb|EHF44662.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4522]
gi|354887406|gb|EHF47681.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4623]
gi|354900601|gb|EHF60735.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354903746|gb|EHF63846.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354906109|gb|EHF66191.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917026|gb|EHF76996.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354921087|gb|EHF81012.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-4632 C4]
gi|355352828|gb|EHG02002.1| 30S ribosomal protein S1 [Escherichia coli cloneA_i1]
gi|355419349|gb|AER83546.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i2']
gi|355424269|gb|AER88465.1| 30S ribosomal protein S1 [Escherichia coli str. 'clone D i14']
gi|359331602|dbj|BAL38049.1| 30S ribosomal subunit protein S1 [Escherichia coli str. K-12
substr. MDS42]
gi|371595869|gb|EHN84715.1| 30S ribosomal protein S1 [Escherichia coli H494]
gi|371599558|gb|EHN88342.1| 30S ribosomal protein S1 [Escherichia coli TA124]
gi|371607863|gb|EHN96426.1| 30S ribosomal protein S1 [Escherichia coli E101]
gi|371609924|gb|EHN98457.1| 30S ribosomal protein S1 [Escherichia coli H397]
gi|371612376|gb|EHO00888.1| 30S ribosomal protein S1 [Escherichia coli B093]
gi|374358016|gb|AEZ39723.1| 30S ribosomal protein S1 [Escherichia coli O55:H7 str. RM12579]
gi|375323122|gb|EHS68844.1| 30S ribosomal protein S1 [Escherichia coli O157:H43 str. T22]
gi|377848008|gb|EHU13005.1| ribosomal protein S1 [Escherichia coli DEC1A]
gi|377849743|gb|EHU14712.1| ribosomal protein S1 [Escherichia coli DEC1C]
gi|377852525|gb|EHU17444.1| ribosomal protein S1 [Escherichia coli DEC1B]
gi|377861830|gb|EHU26646.1| ribosomal protein S1 [Escherichia coli DEC1D]
gi|377865966|gb|EHU30756.1| ribosomal protein S1 [Escherichia coli DEC1E]
gi|377868113|gb|EHU32862.1| ribosomal protein S1 [Escherichia coli DEC2A]
gi|377878255|gb|EHU42843.1| ribosomal protein S1 [Escherichia coli DEC2B]
gi|377882985|gb|EHU47516.1| ribosomal protein S1 [Escherichia coli DEC2D]
gi|377884098|gb|EHU48615.1| ribosomal protein S1 [Escherichia coli DEC2C]
gi|377897240|gb|EHU61623.1| ribosomal protein S1 [Escherichia coli DEC2E]
gi|377899821|gb|EHU64167.1| ribosomal protein S1 [Escherichia coli DEC3A]
gi|377901627|gb|EHU65943.1| ribosomal protein S1 [Escherichia coli DEC3B]
gi|377913238|gb|EHU77382.1| ribosomal protein S1 [Escherichia coli DEC3C]
gi|377917303|gb|EHU81368.1| ribosomal protein S1 [Escherichia coli DEC3D]
gi|377918927|gb|EHU82971.1| ribosomal protein S1 [Escherichia coli DEC3E]
gi|377931142|gb|EHU95012.1| ribosomal protein S1 [Escherichia coli DEC3F]
gi|377933434|gb|EHU97279.1| ribosomal protein S1 [Escherichia coli DEC4A]
gi|377938338|gb|EHV02106.1| ribosomal protein S1 [Escherichia coli DEC4B]
gi|377949087|gb|EHV12727.1| ribosomal protein S1 [Escherichia coli DEC4C]
gi|377950337|gb|EHV13965.1| ribosomal protein S1 [Escherichia coli DEC4D]
gi|377953872|gb|EHV17436.1| ribosomal protein S1 [Escherichia coli DEC4E]
gi|377964536|gb|EHV27971.1| ribosomal protein S1 [Escherichia coli DEC5A]
gi|377965350|gb|EHV28770.1| ribosomal protein S1 [Escherichia coli DEC4F]
gi|377971114|gb|EHV34471.1| ribosomal protein S1 [Escherichia coli DEC5B]
gi|377979291|gb|EHV42568.1| ribosomal protein S1 [Escherichia coli DEC5D]
gi|377986598|gb|EHV49788.1| ribosomal protein S1 [Escherichia coli DEC5E]
gi|377999050|gb|EHV62137.1| ribosomal protein S1 [Escherichia coli DEC6A]
gi|377999923|gb|EHV62998.1| ribosomal protein S1 [Escherichia coli DEC6B]
gi|378002184|gb|EHV65237.1| ribosomal protein S1 [Escherichia coli DEC6C]
gi|378012342|gb|EHV75274.1| ribosomal protein S1 [Escherichia coli DEC6D]
gi|378015442|gb|EHV78337.1| ribosomal protein S1 [Escherichia coli DEC6E]
gi|378018117|gb|EHV80984.1| ribosomal protein S1 [Escherichia coli DEC7A]
gi|378027067|gb|EHV89699.1| ribosomal protein S1 [Escherichia coli DEC7C]
gi|378032859|gb|EHV95440.1| ribosomal protein S1 [Escherichia coli DEC7D]
gi|378036346|gb|EHV98889.1| ribosomal protein S1 [Escherichia coli DEC7B]
gi|378041873|gb|EHW04331.1| ribosomal protein S1 [Escherichia coli DEC7E]
gi|378055733|gb|EHW17994.1| ribosomal protein S1 [Escherichia coli DEC8B]
gi|378061239|gb|EHW23425.1| ribosomal protein S1 [Escherichia coli DEC8C]
gi|378066863|gb|EHW28991.1| ribosomal protein S1 [Escherichia coli DEC8D]
gi|378071445|gb|EHW33515.1| ribosomal protein S1 [Escherichia coli DEC8E]
gi|378080071|gb|EHW42037.1| ribosomal protein S1 [Escherichia coli DEC9A]
gi|378081151|gb|EHW43106.1| ribosomal protein S1 [Escherichia coli DEC9B]
gi|378087751|gb|EHW49607.1| ribosomal protein S1 [Escherichia coli DEC9C]
gi|378093768|gb|EHW55572.1| ribosomal protein S1 [Escherichia coli DEC9D]
gi|378100104|gb|EHW61801.1| ribosomal protein S1 [Escherichia coli DEC9E]
gi|378105216|gb|EHW66863.1| ribosomal protein S1 [Escherichia coli DEC10A]
gi|378113702|gb|EHW75265.1| ribosomal protein S1 [Escherichia coli DEC10B]
gi|378117260|gb|EHW78776.1| ribosomal protein S1 [Escherichia coli DEC10C]
gi|378120950|gb|EHW82412.1| ribosomal protein S1 [Escherichia coli DEC10D]
gi|378132354|gb|EHW93706.1| ribosomal protein S1 [Escherichia coli DEC10E]
gi|378134878|gb|EHW96192.1| ribosomal protein S1 [Escherichia coli DEC11A]
gi|378138103|gb|EHW99364.1| ribosomal protein S1 [Escherichia coli DEC10F]
gi|378145299|gb|EHX06465.1| ribosomal protein S1 [Escherichia coli DEC11B]
gi|378151981|gb|EHX13083.1| ribosomal protein S1 [Escherichia coli DEC11D]
gi|378155165|gb|EHX16225.1| ribosomal protein S1 [Escherichia coli DEC11C]
gi|378160255|gb|EHX21252.1| ribosomal protein S1 [Escherichia coli DEC11E]
gi|378173210|gb|EHX34054.1| ribosomal protein S1 [Escherichia coli DEC12B]
gi|378173919|gb|EHX34752.1| ribosomal protein S1 [Escherichia coli DEC12A]
gi|378175365|gb|EHX36183.1| ribosomal protein S1 [Escherichia coli DEC12C]
gi|378188664|gb|EHX49260.1| ribosomal protein S1 [Escherichia coli DEC12D]
gi|378188967|gb|EHX49561.1| ribosomal protein S1 [Escherichia coli DEC13A]
gi|378193268|gb|EHX53809.1| ribosomal protein S1 [Escherichia coli DEC12E]
gi|378204639|gb|EHX65055.1| ribosomal protein S1 [Escherichia coli DEC13B]
gi|378206463|gb|EHX66866.1| ribosomal protein S1 [Escherichia coli DEC13C]
gi|378206822|gb|EHX67224.1| ribosomal protein S1 [Escherichia coli DEC13D]
gi|378217617|gb|EHX77894.1| ribosomal protein S1 [Escherichia coli DEC13E]
gi|378220901|gb|EHX81152.1| ribosomal protein S1 [Escherichia coli DEC14A]
gi|378224042|gb|EHX84250.1| ribosomal protein S1 [Escherichia coli DEC14B]
gi|378230865|gb|EHX90977.1| ribosomal protein S1 [Escherichia coli DEC14C]
gi|378234766|gb|EHX94842.1| ribosomal protein S1 [Escherichia coli DEC14D]
gi|378242671|gb|EHY02623.1| ribosomal protein S1 [Escherichia coli DEC15A]
gi|378250139|gb|EHY10047.1| ribosomal protein S1 [Escherichia coli DEC15B]
gi|378251188|gb|EHY11089.1| ribosomal protein S1 [Escherichia coli DEC15C]
gi|378256935|gb|EHY16780.1| ribosomal protein S1 [Escherichia coli DEC15D]
gi|378260781|gb|EHY20581.1| ribosomal protein S1 [Escherichia coli DEC15E]
gi|380348873|gb|EIA37149.1| 30S ribosomal protein S1 [Escherichia coli SCI-07]
gi|383102259|gb|AFG39768.1| 30S ribosomal protein S1 [Escherichia coli P12b]
gi|383393644|gb|AFH18602.1| 30S ribosomal protein S1 [Escherichia coli KO11FL]
gi|383404414|gb|AFH10657.1| 30S ribosomal protein S1 [Escherichia coli W]
gi|383466428|gb|EID61449.1| 30S ribosomal protein S1 [Shigella flexneri 5a str. M90T]
gi|383474020|gb|EID66024.1| 30S ribosomal protein S1 [Escherichia coli W26]
gi|384378493|gb|EIE36374.1| 30S ribosomal protein S1 [Escherichia coli J53]
gi|384472908|gb|EIE56956.1| 30S ribosomal protein S1 [Escherichia coli AI27]
gi|385157616|gb|EIF19607.1| 30S ribosomal protein S1 [Escherichia coli O32:H37 str. P4]
gi|385536554|gb|EIF83447.1| 30S ribosomal protein S1 [Escherichia coli M919]
gi|385707553|gb|EIG44584.1| 30S ribosomal protein S1 [Escherichia coli B799]
gi|385711746|gb|EIG48703.1| 30S ribosomal protein S1 [Escherichia coli H730]
gi|386122831|gb|EIG71438.1| 30S ribosomal protein S1 [Escherichia sp. 4_1_40B]
gi|386138260|gb|EIG79420.1| ribosomal protein S1 [Escherichia coli 1.2741]
gi|386149328|gb|EIG95760.1| ribosomal protein S1 [Escherichia coli 97.0246]
gi|386153815|gb|EIH05096.1| ribosomal protein S1 [Escherichia coli 5.0588]
gi|386158890|gb|EIH15223.1| ribosomal protein S1 [Escherichia coli 97.0259]
gi|386164330|gb|EIH26116.1| ribosomal protein S1 [Escherichia coli 1.2264]
gi|386169337|gb|EIH35845.1| ribosomal protein S1 [Escherichia coli 96.0497]
gi|386173953|gb|EIH45954.1| ribosomal protein S1 [Escherichia coli 99.0741]
gi|386181173|gb|EIH58643.1| ribosomal protein S1 [Escherichia coli 3.2608]
gi|386185702|gb|EIH68428.1| ribosomal protein S1 [Escherichia coli 93.0624]
gi|386190223|gb|EIH78971.1| ribosomal protein S1 [Escherichia coli 4.0522]
gi|386196195|gb|EIH90421.1| ribosomal protein S1 [Escherichia coli JB1-95]
gi|386199957|gb|EIH98948.1| ribosomal protein S1 [Escherichia coli 96.154]
gi|386206796|gb|EII11302.1| ribosomal protein S1 [Escherichia coli 5.0959]
gi|386212083|gb|EII22532.1| ribosomal protein S1 [Escherichia coli 9.0111]
gi|386218239|gb|EII34722.1| ribosomal protein S1 [Escherichia coli 4.0967]
gi|386224560|gb|EII46895.1| ribosomal protein S1 [Escherichia coli 2.3916]
gi|386229391|gb|EII56746.1| ribosomal protein S1 [Escherichia coli 3.3884]
gi|386232643|gb|EII64628.1| ribosomal protein S1 [Escherichia coli 2.4168]
gi|386240847|gb|EII77767.1| ribosomal protein S1 [Escherichia coli 3.2303]
gi|386244177|gb|EII85909.1| ribosomal protein S1 [Escherichia coli 3003]
gi|386248033|gb|EII94206.1| ribosomal protein S1 [Escherichia coli TW07793]
gi|386255831|gb|EIJ05519.1| ribosomal protein S1 [Escherichia coli B41]
gi|386261401|gb|EIJ16866.1| ribosomal protein S1 [Escherichia coli 900105 (10e)]
gi|386794981|gb|AFJ28015.1| 30S ribosomal protein S1 [Escherichia coli Xuzhou21]
gi|388332449|gb|EIK99120.1| 30S ribosomal protein S1 [Escherichia coli O103:H2 str. CVM9450]
gi|388338641|gb|EIL05089.1| 30S ribosomal protein S1 [Escherichia coli O103:H25 str. CVM9340]
gi|388347162|gb|EIL12850.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9545]
gi|388352796|gb|EIL17884.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9534]
gi|388357528|gb|EIL22091.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9570]
gi|388363500|gb|EIL27429.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9574]
gi|388373675|gb|EIL36922.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10026]
gi|388379349|gb|EIL42018.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9942]
gi|388385806|gb|EIL47473.1| 30S ribosomal protein S1 [Escherichia coli 541-15]
gi|388392544|gb|EIL53961.1| 30S ribosomal protein S1 [Escherichia coli KD2]
gi|388393074|gb|EIL54468.1| 30S ribosomal protein S1 [Escherichia coli KD1]
gi|388401848|gb|EIL62460.1| 30S ribosomal protein S1 [Escherichia coli 576-1]
gi|388401976|gb|EIL62577.1| 30S ribosomal protein S1 [Escherichia coli 75]
gi|388405207|gb|EIL65641.1| 30S ribosomal protein S1 [Escherichia coli 541-1]
gi|388413178|gb|EIL73188.1| 30S ribosomal protein S1 [Escherichia coli CUMT8]
gi|388416606|gb|EIL76488.1| 30S ribosomal protein S1 [Escherichia coli HM605]
gi|390649708|gb|EIN28188.1| ribosomal protein S1 [Escherichia coli FRIK1996]
gi|390651818|gb|EIN30088.1| ribosomal protein S1 [Escherichia coli FDA517]
gi|390652133|gb|EIN30368.1| ribosomal protein S1 [Escherichia coli FDA505]
gi|390669182|gb|EIN45887.1| ribosomal protein S1 [Escherichia coli 93-001]
gi|390671692|gb|EIN48076.1| ribosomal protein S1 [Escherichia coli FRIK1990]
gi|390672244|gb|EIN48554.1| ribosomal protein S1 [Escherichia coli FRIK1985]
gi|390677866|gb|EIN53866.1| ribosomal protein S1 [Escherichia coli PA3]
gi|390690811|gb|EIN65597.1| ribosomal protein S1 [Escherichia coli PA9]
gi|390691240|gb|EIN65998.1| ribosomal protein S1 [Escherichia coli PA5]
gi|390707412|gb|EIN80762.1| ribosomal protein S1 [Escherichia coli PA10]
gi|390709183|gb|EIN82300.1| ribosomal protein S1 [Escherichia coli PA15]
gi|390710189|gb|EIN83212.1| ribosomal protein S1 [Escherichia coli PA14]
gi|390719374|gb|EIN92099.1| ribosomal protein S1 [Escherichia coli PA22]
gi|390732357|gb|EIO04043.1| ribosomal protein S1 [Escherichia coli PA24]
gi|390732548|gb|EIO04233.1| ribosomal protein S1 [Escherichia coli PA25]
gi|390735395|gb|EIO06789.1| ribosomal protein S1 [Escherichia coli PA28]
gi|390750844|gb|EIO20835.1| ribosomal protein S1 [Escherichia coli PA31]
gi|390751222|gb|EIO21150.1| ribosomal protein S1 [Escherichia coli PA32]
gi|390754063|gb|EIO23693.1| ribosomal protein S1 [Escherichia coli PA33]
gi|390761768|gb|EIO31044.1| ribosomal protein S1 [Escherichia coli PA40]
gi|390775158|gb|EIO43232.1| ribosomal protein S1 [Escherichia coli PA41]
gi|390776808|gb|EIO44687.1| ribosomal protein S1 [Escherichia coli PA42]
gi|390780689|gb|EIO48387.1| ribosomal protein S1 [Escherichia coli PA39]
gi|390785105|gb|EIO52661.1| ribosomal protein S1 [Escherichia coli TW06591]
gi|390794344|gb|EIO61643.1| ribosomal protein S1 [Escherichia coli TW10246]
gi|390801157|gb|EIO68223.1| ribosomal protein S1 [Escherichia coli TW11039]
gi|390808254|gb|EIO75100.1| ribosomal protein S1 [Escherichia coli TW07945]
gi|390811156|gb|EIO77880.1| ribosomal protein S1 [Escherichia coli TW09109]
gi|390818750|gb|EIO85119.1| ribosomal protein S1 [Escherichia coli TW10119]
gi|390821414|gb|EIO87604.1| ribosomal protein S1 [Escherichia coli TW09098]
gi|390831716|gb|EIO97084.1| ribosomal protein S1 [Escherichia coli EC4196]
gi|390836270|gb|EIP00823.1| ribosomal protein S1 [Escherichia coli EC4203]
gi|390839218|gb|EIP03355.1| ribosomal protein S1 [Escherichia coli TW09195]
gi|390854757|gb|EIP17534.1| ribosomal protein S1 [Escherichia coli TW14301]
gi|390857277|gb|EIP19725.1| ribosomal protein S1 [Escherichia coli TW14313]
gi|390857747|gb|EIP20173.1| ribosomal protein S1 [Escherichia coli EC4421]
gi|390870638|gb|EIP32139.1| ribosomal protein S1 [Escherichia coli EC4422]
gi|390875081|gb|EIP36163.1| ribosomal protein S1 [Escherichia coli EC4013]
gi|390884594|gb|EIP44885.1| ribosomal protein S1 [Escherichia coli EC4402]
gi|390887133|gb|EIP47128.1| ribosomal protein S1 [Escherichia coli EC4439]
gi|390892775|gb|EIP52346.1| ribosomal protein S1 [Escherichia coli EC4436]
gi|390903263|gb|EIP62318.1| ribosomal protein S1 [Escherichia coli EC1738]
gi|390908454|gb|EIP67277.1| ribosomal protein S1 [Escherichia coli EC4437]
gi|390911425|gb|EIP70130.1| ribosomal protein S1 [Escherichia coli EC1734]
gi|390913358|gb|EIP71949.1| ribosomal protein S1 [Escherichia coli EC4448]
gi|390924234|gb|EIP82036.1| ribosomal protein S1 [Escherichia coli EC1863]
gi|390925642|gb|EIP83276.1| ribosomal protein S1 [Escherichia coli EC1845]
gi|391250762|gb|EIQ09982.1| ribosomal protein S1 [Shigella flexneri CCH060]
gi|391253134|gb|EIQ12317.1| ribosomal protein S1 [Shigella flexneri 2850-71]
gi|391257254|gb|EIQ16373.1| ribosomal protein S1 [Shigella flexneri K-1770]
gi|391266634|gb|EIQ25583.1| ribosomal protein S1 [Shigella flexneri K-315]
gi|391270337|gb|EIQ29229.1| ribosomal protein S1 [Shigella boydii 965-58]
gi|391272217|gb|EIQ31072.1| ribosomal protein S1 [Shigella flexneri K-404]
gi|391287268|gb|EIQ45799.1| ribosomal protein S1 [Shigella sonnei 3226-85]
gi|391287410|gb|EIQ45940.1| ribosomal protein S1 [Shigella boydii 4444-74]
gi|391288134|gb|EIQ46643.1| ribosomal protein S1 [Shigella sonnei 3233-85]
gi|391295925|gb|EIQ54047.1| ribosomal protein S1 [Shigella sonnei 4822-66]
gi|391300944|gb|EIQ58847.1| ribosomal protein S1 [Shigella dysenteriae 225-75]
gi|391308898|gb|EIQ66585.1| ribosomal protein S1 [Escherichia coli EPECa12]
gi|391314246|gb|EIQ71802.1| ribosomal protein S1 [Escherichia coli EPEC C342-62]
gi|394382012|gb|EJE59665.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10224]
gi|394382303|gb|EJE59950.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9634]
gi|394389492|gb|EJE66634.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str. CVM9602]
gi|394395887|gb|EJE72280.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9455]
gi|394401828|gb|EJE77597.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10021]
gi|394413049|gb|EJE87134.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str. CVM9553]
gi|394415774|gb|EJE89618.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM10030]
gi|394426790|gb|EJE99583.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str. CVM9952]
gi|397786223|gb|EJK97063.1| ribosomal protein S1 [Escherichia coli STEC_O31]
gi|397900122|gb|EJL16488.1| ribosomal protein S1 [Shigella flexneri 6603-63]
gi|397902550|gb|EJL18863.1| ribosomal protein S1 [Shigella sonnei str. Moseley]
gi|404292293|gb|EJZ49122.1| 30S ribosomal protein S1 [Escherichia sp. 1_1_43]
gi|404339036|gb|EJZ65476.1| ribosomal protein S1 [Shigella flexneri 1485-80]
gi|406778598|gb|AFS58022.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055181|gb|AFS75232.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 2011C-3493]
gi|407064419|gb|AFS85466.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408071741|gb|EKH06076.1| ribosomal protein S1 [Escherichia coli PA7]
gi|408075294|gb|EKH09530.1| ribosomal protein S1 [Escherichia coli FRIK920]
gi|408085513|gb|EKH19137.1| ribosomal protein S1 [Escherichia coli PA34]
gi|408089351|gb|EKH22682.1| ribosomal protein S1 [Escherichia coli FDA506]
gi|408094145|gb|EKH27190.1| ribosomal protein S1 [Escherichia coli FDA507]
gi|408101182|gb|EKH33651.1| ribosomal protein S1 [Escherichia coli FDA504]
gi|408109149|gb|EKH41080.1| ribosomal protein S1 [Escherichia coli FRIK1999]
gi|408115678|gb|EKH47052.1| ribosomal protein S1 [Escherichia coli FRIK1997]
gi|408120673|gb|EKH51648.1| ribosomal protein S1 [Escherichia coli NE1487]
gi|408129008|gb|EKH59257.1| ribosomal protein S1 [Escherichia coli NE037]
gi|408131133|gb|EKH61194.1| ribosomal protein S1 [Escherichia coli FRIK2001]
gi|408140216|gb|EKH69751.1| ribosomal protein S1 [Escherichia coli PA4]
gi|408149566|gb|EKH78244.1| ribosomal protein S1 [Escherichia coli PA23]
gi|408151282|gb|EKH79790.1| ribosomal protein S1 [Escherichia coli PA49]
gi|408156571|gb|EKH84773.1| ribosomal protein S1 [Escherichia coli PA45]
gi|408166282|gb|EKH93900.1| ribosomal protein S1 [Escherichia coli TT12B]
gi|408170776|gb|EKH97931.1| ribosomal protein S1 [Escherichia coli MA6]
gi|408172988|gb|EKI00041.1| ribosomal protein S1 [Escherichia coli 5905]
gi|408186035|gb|EKI12149.1| ribosomal protein S1 [Escherichia coli CB7326]
gi|408190032|gb|EKI15708.1| ribosomal protein S1 [Escherichia coli 5412]
gi|408190579|gb|EKI16224.1| ribosomal protein S1 [Escherichia coli EC96038]
gi|408196394|gb|EKI21675.1| ribosomal protein S1 [Escherichia coli TW15901]
gi|408205138|gb|EKI30038.1| ribosomal protein S1 [Escherichia coli TW00353]
gi|408205980|gb|EKI30803.1| ribosomal protein S1 [Escherichia coli ARS4.2123]
gi|408217730|gb|EKI41969.1| ribosomal protein S1 [Escherichia coli 3006]
gi|408220912|gb|EKI44903.1| ribosomal protein S1 [Escherichia coli 07798]
gi|408228678|gb|EKI52205.1| ribosomal protein S1 [Escherichia coli N1]
gi|408231546|gb|EKI54813.1| ribosomal protein S1 [Escherichia coli PA38]
gi|408237562|gb|EKI60417.1| ribosomal protein S1 [Escherichia coli EC1735]
gi|408248306|gb|EKI70361.1| ribosomal protein S1 [Escherichia coli EC1736]
gi|408251980|gb|EKI73689.1| ribosomal protein S1 [Escherichia coli EC1737]
gi|408258188|gb|EKI79471.1| ribosomal protein S1 [Escherichia coli EC1846]
gi|408267130|gb|EKI87599.1| ribosomal protein S1 [Escherichia coli EC1847]
gi|408268806|gb|EKI89135.1| ribosomal protein S1 [Escherichia coli EC1848]
gi|408278307|gb|EKI98069.1| ribosomal protein S1 [Escherichia coli EC1849]
gi|408284009|gb|EKJ03138.1| ribosomal protein S1 [Escherichia coli EC1850]
gi|408286755|gb|EKJ05674.1| ribosomal protein S1 [Escherichia coli EC1856]
gi|408299202|gb|EKJ17031.1| ribosomal protein S1 [Escherichia coli EC1862]
gi|408299676|gb|EKJ17447.1| ribosomal protein S1 [Escherichia coli EC1864]
gi|408308792|gb|EKJ26025.1| ribosomal protein S1 [Escherichia coli EC1865]
gi|408315313|gb|EKJ31632.1| ribosomal protein S1 [Escherichia coli EC1868]
gi|408316038|gb|EKJ32336.1| ribosomal protein S1 [Escherichia coli EC1866]
gi|408330579|gb|EKJ45842.1| ribosomal protein S1 [Escherichia coli EC1869]
gi|408335284|gb|EKJ50135.1| ribosomal protein S1 [Escherichia coli NE098]
gi|408337114|gb|EKJ51860.1| ribosomal protein S1 [Escherichia coli EC1870]
gi|408347170|gb|EKJ61404.1| ribosomal protein S1 [Escherichia coli 0.1288]
gi|408349643|gb|EKJ63565.1| ribosomal protein S1 [Escherichia coli FRIK523]
gi|408352721|gb|EKJ66265.1| ribosomal protein S1 [Escherichia coli 0.1304]
gi|408458956|gb|EKJ82740.1| 30S ribosomal protein S1 [Escherichia coli AD30]
gi|408557643|gb|EKK34075.1| ribosomal protein S1 [Escherichia coli 5.2239]
gi|408557854|gb|EKK34276.1| ribosomal protein S1 [Escherichia coli 3.4870]
gi|408558558|gb|EKK34922.1| ribosomal protein S1 [Escherichia coli 6.0172]
gi|408570140|gb|EKK46120.1| ribosomal protein S1 [Escherichia coli 8.0586]
gi|408571986|gb|EKK47913.1| ribosomal protein S1 [Escherichia coli 8.0566]
gi|408572601|gb|EKK48487.1| ribosomal protein S1 [Escherichia coli 8.0569]
gi|408588694|gb|EKK63266.1| ribosomal protein S1 [Escherichia coli 8.2524]
gi|408589698|gb|EKK64200.1| ribosomal protein S1 [Escherichia coli 10.0833]
gi|408601322|gb|EKK75125.1| ribosomal protein S1 [Escherichia coli 8.0416]
gi|408603513|gb|EKK77154.1| ribosomal protein S1 [Escherichia coli 10.0869]
gi|408606767|gb|EKK80193.1| ribosomal protein S1 [Escherichia coli 88.0221]
gi|408616212|gb|EKK89371.1| ribosomal protein S1 [Escherichia coli 10.0821]
gi|412962249|emb|CCK46163.1| 30S ribosomal subunit protein S1 [Escherichia coli chi7122]
gi|412968828|emb|CCJ43454.1| 30S ribosomal subunit protein S1 [Escherichia coli]
gi|421942234|gb|EKT99588.1| 30S ribosomal protein S1 [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421944007|gb|EKU01269.1| 30S ribosomal protein S1 [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421949995|gb|EKU06900.1| 30S ribosomal protein S1 [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427213408|gb|EKV82817.1| ribosomal protein S1 [Escherichia coli 88.1042]
gi|427215267|gb|EKV84453.1| ribosomal protein S1 [Escherichia coli 89.0511]
gi|427215522|gb|EKV84701.1| ribosomal protein S1 [Escherichia coli 88.1467]
gi|427232786|gb|EKW00592.1| ribosomal protein S1 [Escherichia coli 90.2281]
gi|427233208|gb|EKW00994.1| ribosomal protein S1 [Escherichia coli 90.0039]
gi|427234752|gb|EKW02429.1| ribosomal protein S1 [Escherichia coli 90.0091]
gi|427250509|gb|EKW17180.1| ribosomal protein S1 [Escherichia coli 93.0056]
gi|427252035|gb|EKW18557.1| ribosomal protein S1 [Escherichia coli 93.0055]
gi|427253369|gb|EKW19811.1| ribosomal protein S1 [Escherichia coli 94.0618]
gi|427269290|gb|EKW34256.1| ribosomal protein S1 [Escherichia coli 95.0183]
gi|427269429|gb|EKW34390.1| ribosomal protein S1 [Escherichia coli 95.0943]
gi|427273585|gb|EKW38264.1| ribosomal protein S1 [Escherichia coli 95.1288]
gi|427283329|gb|EKW47537.1| ribosomal protein S1 [Escherichia coli 96.0939]
gi|427285796|gb|EKW49735.1| ribosomal protein S1 [Escherichia coli 96.0428]
gi|427291007|gb|EKW54457.1| ribosomal protein S1 [Escherichia coli 96.0427]
gi|427292093|gb|EKW55449.1| ribosomal protein S1 [Escherichia coli 96.0932]
gi|427304142|gb|EKW66812.1| ribosomal protein S1 [Escherichia coli 97.0003]
gi|427309248|gb|EKW71570.1| ribosomal protein S1 [Escherichia coli 96.0107]
gi|427321145|gb|EKW82848.1| ribosomal protein S1 [Escherichia coli 97.0007]
gi|427323474|gb|EKW85037.1| ribosomal protein S1 [Escherichia coli 97.1742]
gi|427333067|gb|EKW94181.1| ribosomal protein S1 [Escherichia coli 99.0713]
gi|427333516|gb|EKW94621.1| ribosomal protein S1 [Escherichia coli 99.0678]
gi|427336233|gb|EKW97212.1| ribosomal protein S1 [Escherichia coli 99.0672]
gi|429259415|gb|EKY43112.1| ribosomal protein S1 [Escherichia coli 96.0109]
gi|429261278|gb|EKY44728.1| ribosomal protein S1 [Escherichia coli 97.0010]
gi|429350045|gb|EKY86780.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02030]
gi|429350757|gb|EKY87482.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02033-1]
gi|429351135|gb|EKY87856.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02092]
gi|429365413|gb|EKZ02026.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02093]
gi|429366364|gb|EKZ02967.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02281]
gi|429368927|gb|EKZ05510.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02318]
gi|429381334|gb|EKZ17821.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-02913]
gi|429382302|gb|EKZ18767.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03439]
gi|429383350|gb|EKZ19810.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-03943]
gi|429395568|gb|EKZ31934.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. 11-04080]
gi|429396782|gb|EKZ33130.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9450]
gi|429397660|gb|EKZ34006.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9990]
gi|429409388|gb|EKZ45618.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4984]
gi|429417848|gb|EKZ53995.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4987]
gi|429421517|gb|EKZ57638.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4988]
gi|429423257|gb|EKZ59365.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-4986]
gi|429427259|gb|EKZ63344.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434141|gb|EKZ70170.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-5604]
gi|429438128|gb|EKZ74122.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0465]
gi|429443484|gb|EKZ79436.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-6006]
gi|429449587|gb|EKZ85486.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec12-0466]
gi|429455162|gb|EKZ91019.1| 30S ribosomal protein S1 [Escherichia coli O104:H4 str. Ec11-9941]
gi|430877349|gb|ELC00800.1| 30S ribosomal protein S1 [Escherichia coli KTE2]
gi|430879111|gb|ELC02468.1| 30S ribosomal protein S1 [Escherichia coli KTE4]
gi|430888180|gb|ELC10903.1| 30S ribosomal protein S1 [Escherichia coli KTE10]
gi|430889560|gb|ELC12221.1| 30S ribosomal protein S1 [Escherichia coli KTE5]
gi|430900650|gb|ELC22668.1| 30S ribosomal protein S1 [Escherichia coli KTE12]
gi|430909330|gb|ELC30715.1| 30S ribosomal protein S1 [Escherichia coli KTE16]
gi|430910596|gb|ELC31903.1| 30S ribosomal protein S1 [Escherichia coli KTE15]
gi|430917111|gb|ELC38159.1| 30S ribosomal protein S1 [Escherichia coli KTE25]
gi|430921560|gb|ELC42384.1| 30S ribosomal protein S1 [Escherichia coli KTE21]
gi|430927706|gb|ELC48269.1| 30S ribosomal protein S1 [Escherichia coli KTE26]
gi|430931877|gb|ELC52311.1| 30S ribosomal protein S1 [Escherichia coli KTE28]
gi|430937406|gb|ELC57661.1| 30S ribosomal protein S1 [Escherichia coli KTE39]
gi|430942442|gb|ELC62575.1| 30S ribosomal protein S1 [Escherichia coli KTE44]
gi|430946643|gb|ELC66566.1| 30S ribosomal protein S1 [Escherichia coli KTE178]
gi|430955396|gb|ELC74179.1| 30S ribosomal protein S1 [Escherichia coli KTE187]
gi|430958399|gb|ELC76993.1| 30S ribosomal protein S1 [Escherichia coli KTE181]
gi|430965812|gb|ELC83221.1| 30S ribosomal protein S1 [Escherichia coli KTE188]
gi|430968356|gb|ELC85582.1| 30S ribosomal protein S1 [Escherichia coli KTE189]
gi|430973823|gb|ELC90768.1| 30S ribosomal protein S1 [Escherichia coli KTE193]
gi|430975240|gb|ELC92142.1| 30S ribosomal protein S1 [Escherichia coli KTE191]
gi|430984498|gb|ELD01121.1| 30S ribosomal protein S1 [Escherichia coli KTE201]
gi|430990595|gb|ELD07016.1| 30S ribosomal protein S1 [Escherichia coli KTE204]
gi|430999453|gb|ELD15535.1| 30S ribosomal protein S1 [Escherichia coli KTE206]
gi|431008061|gb|ELD22868.1| 30S ribosomal protein S1 [Escherichia coli KTE208]
gi|431009233|gb|ELD23853.1| 30S ribosomal protein S1 [Escherichia coli KTE210]
gi|431017755|gb|ELD31210.1| 30S ribosomal protein S1 [Escherichia coli KTE212]
gi|431022757|gb|ELD36017.1| 30S ribosomal protein S1 [Escherichia coli KTE213]
gi|431027314|gb|ELD40377.1| 30S ribosomal protein S1 [Escherichia coli KTE214]
gi|431031181|gb|ELD44079.1| 30S ribosomal protein S1 [Escherichia coli KTE216]
gi|431041594|gb|ELD52094.1| 30S ribosomal protein S1 [Escherichia coli KTE220]
gi|431043750|gb|ELD54031.1| 30S ribosomal protein S1 [Escherichia coli KTE228]
gi|431044192|gb|ELD54472.1| 30S ribosomal protein S1 [Escherichia coli KTE224]
gi|431054303|gb|ELD63884.1| 30S ribosomal protein S1 [Escherichia coli KTE230]
gi|431056619|gb|ELD66120.1| 30S ribosomal protein S1 [Escherichia coli KTE233]
gi|431062859|gb|ELD72119.1| 30S ribosomal protein S1 [Escherichia coli KTE234]
gi|431072549|gb|ELD80300.1| 30S ribosomal protein S1 [Escherichia coli KTE235]
gi|431076549|gb|ELD84044.1| 30S ribosomal protein S1 [Escherichia coli KTE236]
gi|431083701|gb|ELD89873.1| 30S ribosomal protein S1 [Escherichia coli KTE237]
gi|431085628|gb|ELD91732.1| 30S ribosomal protein S1 [Escherichia coli KTE47]
gi|431093498|gb|ELD99163.1| 30S ribosomal protein S1 [Escherichia coli KTE49]
gi|431097471|gb|ELE02799.1| 30S ribosomal protein S1 [Escherichia coli KTE51]
gi|431102063|gb|ELE06968.1| 30S ribosomal protein S1 [Escherichia coli KTE53]
gi|431107598|gb|ELE11763.1| 30S ribosomal protein S1 [Escherichia coli KTE56]
gi|431110100|gb|ELE14027.1| 30S ribosomal protein S1 [Escherichia coli KTE55]
gi|431122889|gb|ELE25641.1| 30S ribosomal protein S1 [Escherichia coli KTE58]
gi|431131875|gb|ELE33891.1| 30S ribosomal protein S1 [Escherichia coli KTE60]
gi|431132578|gb|ELE34577.1| 30S ribosomal protein S1 [Escherichia coli KTE62]
gi|431140178|gb|ELE41955.1| 30S ribosomal protein S1 [Escherichia coli KTE67]
gi|431142382|gb|ELE44130.1| 30S ribosomal protein S1 [Escherichia coli KTE66]
gi|431150925|gb|ELE51967.1| 30S ribosomal protein S1 [Escherichia coli KTE72]
gi|431156428|gb|ELE57101.1| 30S ribosomal protein S1 [Escherichia coli KTE75]
gi|431161515|gb|ELE61986.1| 30S ribosomal protein S1 [Escherichia coli KTE76]
gi|431164464|gb|ELE64855.1| 30S ribosomal protein S1 [Escherichia coli KTE77]
gi|431173078|gb|ELE73159.1| 30S ribosomal protein S1 [Escherichia coli KTE81]
gi|431173568|gb|ELE73644.1| 30S ribosomal protein S1 [Escherichia coli KTE80]
gi|431182572|gb|ELE82389.1| 30S ribosomal protein S1 [Escherichia coli KTE86]
gi|431183995|gb|ELE83761.1| 30S ribosomal protein S1 [Escherichia coli KTE83]
gi|431192924|gb|ELE92268.1| 30S ribosomal protein S1 [Escherichia coli KTE87]
gi|431193790|gb|ELE93064.1| 30S ribosomal protein S1 [Escherichia coli KTE93]
gi|431202010|gb|ELF00706.1| 30S ribosomal protein S1 [Escherichia coli KTE111]
gi|431202839|gb|ELF01516.1| 30S ribosomal protein S1 [Escherichia coli KTE116]
gi|431212386|gb|ELF10313.1| 30S ribosomal protein S1 [Escherichia coli KTE119]
gi|431217076|gb|ELF14663.1| 30S ribosomal protein S1 [Escherichia coli KTE142]
gi|431223595|gb|ELF20841.1| 30S ribosomal protein S1 [Escherichia coli KTE143]
gi|431229221|gb|ELF25873.1| 30S ribosomal protein S1 [Escherichia coli KTE161]
gi|431236325|gb|ELF31538.1| 30S ribosomal protein S1 [Escherichia coli KTE162]
gi|431246047|gb|ELF40325.1| 30S ribosomal protein S1 [Escherichia coli KTE171]
gi|431246405|gb|ELF40671.1| 30S ribosomal protein S1 [Escherichia coli KTE169]
gi|431251478|gb|ELF45495.1| 30S ribosomal protein S1 [Escherichia coli KTE6]
gi|431258698|gb|ELF51461.1| 30S ribosomal protein S1 [Escherichia coli KTE8]
gi|431265068|gb|ELF56765.1| 30S ribosomal protein S1 [Escherichia coli KTE9]
gi|431267495|gb|ELF59012.1| 30S ribosomal protein S1 [Escherichia coli KTE17]
gi|431274794|gb|ELF65839.1| 30S ribosomal protein S1 [Escherichia coli KTE18]
gi|431277879|gb|ELF68883.1| 30S ribosomal protein S1 [Escherichia coli KTE45]
gi|431285283|gb|ELF76119.1| 30S ribosomal protein S1 [Escherichia coli KTE23]
gi|431285951|gb|ELF76786.1| 30S ribosomal protein S1 [Escherichia coli KTE42]
gi|431294359|gb|ELF84539.1| 30S ribosomal protein S1 [Escherichia coli KTE43]
gi|431298682|gb|ELF88306.1| 30S ribosomal protein S1 [Escherichia coli KTE29]
gi|431304902|gb|ELF93426.1| 30S ribosomal protein S1 [Escherichia coli KTE22]
gi|431310641|gb|ELF98822.1| 30S ribosomal protein S1 [Escherichia coli KTE46]
gi|431312812|gb|ELG00801.1| 30S ribosomal protein S1 [Escherichia coli KTE48]
gi|431317218|gb|ELG04998.1| 30S ribosomal protein S1 [Escherichia coli KTE50]
gi|431319455|gb|ELG07125.1| 30S ribosomal protein S1 [Escherichia coli KTE54]
gi|431329995|gb|ELG17280.1| 30S ribosomal protein S1 [Escherichia coli KTE59]
gi|431331191|gb|ELG18454.1| 30S ribosomal protein S1 [Escherichia coli KTE63]
gi|431340641|gb|ELG27662.1| 30S ribosomal protein S1 [Escherichia coli KTE65]
gi|431341232|gb|ELG28245.1| 30S ribosomal protein S1 [Escherichia coli KTE78]
gi|431344244|gb|ELG31182.1| 30S ribosomal protein S1 [Escherichia coli KTE79]
gi|431350178|gb|ELG36996.1| 30S ribosomal protein S1 [Escherichia coli KTE84]
gi|431356222|gb|ELG42913.1| 30S ribosomal protein S1 [Escherichia coli KTE101]
gi|431356649|gb|ELG43339.1| 30S ribosomal protein S1 [Escherichia coli KTE91]
gi|431366783|gb|ELG53280.1| 30S ribosomal protein S1 [Escherichia coli KTE115]
gi|431370427|gb|ELG56228.1| 30S ribosomal protein S1 [Escherichia coli KTE118]
gi|431379233|gb|ELG64167.1| 30S ribosomal protein S1 [Escherichia coli KTE135]
gi|431386873|gb|ELG70826.1| 30S ribosomal protein S1 [Escherichia coli KTE136]
gi|431391042|gb|ELG74690.1| 30S ribosomal protein S1 [Escherichia coli KTE140]
gi|431396748|gb|ELG80215.1| 30S ribosomal protein S1 [Escherichia coli KTE141]
gi|431401368|gb|ELG84712.1| 30S ribosomal protein S1 [Escherichia coli KTE144]
gi|431404071|gb|ELG87329.1| 30S ribosomal protein S1 [Escherichia coli KTE147]
gi|431406720|gb|ELG89939.1| 30S ribosomal protein S1 [Escherichia coli KTE146]
gi|431412874|gb|ELG95673.1| 30S ribosomal protein S1 [Escherichia coli KTE154]
gi|431418448|gb|ELH00843.1| 30S ribosomal protein S1 [Escherichia coli KTE158]
gi|431424623|gb|ELH06719.1| 30S ribosomal protein S1 [Escherichia coli KTE165]
gi|431428565|gb|ELH10506.1| 30S ribosomal protein S1 [Escherichia coli KTE192]
gi|431435334|gb|ELH16945.1| 30S ribosomal protein S1 [Escherichia coli KTE194]
gi|431443184|gb|ELH24261.1| 30S ribosomal protein S1 [Escherichia coli KTE190]
gi|431446310|gb|ELH27059.1| 30S ribosomal protein S1 [Escherichia coli KTE173]
gi|431448140|gb|ELH28858.1| 30S ribosomal protein S1 [Escherichia coli KTE175]
gi|431452389|gb|ELH32834.1| 30S ribosomal protein S1 [Escherichia coli KTE183]
gi|431455118|gb|ELH35474.1| 30S ribosomal protein S1 [Escherichia coli KTE184]
gi|431461592|gb|ELH41859.1| 30S ribosomal protein S1 [Escherichia coli KTE196]
gi|431469508|gb|ELH49437.1| 30S ribosomal protein S1 [Escherichia coli KTE197]
gi|431472980|gb|ELH52814.1| 30S ribosomal protein S1 [Escherichia coli KTE203]
gi|431477695|gb|ELH57457.1| 30S ribosomal protein S1 [Escherichia coli KTE202]
gi|431481076|gb|ELH60790.1| 30S ribosomal protein S1 [Escherichia coli KTE209]
gi|431485329|gb|ELH64991.1| 30S ribosomal protein S1 [Escherichia coli KTE207]
gi|431493275|gb|ELH72869.1| 30S ribosomal protein S1 [Escherichia coli KTE211]
gi|431496880|gb|ELH76458.1| 30S ribosomal protein S1 [Escherichia coli KTE217]
gi|431504546|gb|ELH83171.1| 30S ribosomal protein S1 [Escherichia coli KTE215]
gi|431508850|gb|ELH87121.1| 30S ribosomal protein S1 [Escherichia coli KTE218]
gi|431513395|gb|ELH91478.1| 30S ribosomal protein S1 [Escherichia coli KTE223]
gi|431517700|gb|ELH95222.1| 30S ribosomal protein S1 [Escherichia coli KTE227]
gi|431518249|gb|ELH95769.1| 30S ribosomal protein S1 [Escherichia coli KTE229]
gi|431534260|gb|ELI10744.1| 30S ribosomal protein S1 [Escherichia coli KTE104]
gi|431535861|gb|ELI12197.1| 30S ribosomal protein S1 [Escherichia coli KTE105]
gi|431539503|gb|ELI15254.1| 30S ribosomal protein S1 [Escherichia coli KTE106]
gi|431544932|gb|ELI19742.1| 30S ribosomal protein S1 [Escherichia coli KTE109]
gi|431554123|gb|ELI28005.1| 30S ribosomal protein S1 [Escherichia coli KTE113]
gi|431558530|gb|ELI32148.1| 30S ribosomal protein S1 [Escherichia coli KTE112]
gi|431559200|gb|ELI32771.1| 30S ribosomal protein S1 [Escherichia coli KTE117]
gi|431570408|gb|ELI43320.1| 30S ribosomal protein S1 [Escherichia coli KTE120]
gi|431573320|gb|ELI46125.1| 30S ribosomal protein S1 [Escherichia coli KTE124]
gi|431574727|gb|ELI47490.1| 30S ribosomal protein S1 [Escherichia coli KTE122]
gi|431586785|gb|ELI58171.1| 30S ribosomal protein S1 [Escherichia coli KTE125]
gi|431589695|gb|ELI60908.1| 30S ribosomal protein S1 [Escherichia coli KTE128]
gi|431600027|gb|ELI69704.1| 30S ribosomal protein S1 [Escherichia coli KTE131]
gi|431605673|gb|ELI75062.1| 30S ribosomal protein S1 [Escherichia coli KTE133]
gi|431608894|gb|ELI78231.1| 30S ribosomal protein S1 [Escherichia coli KTE137]
gi|431613204|gb|ELI82404.1| 30S ribosomal protein S1 [Escherichia coli KTE138]
gi|431618755|gb|ELI87689.1| 30S ribosomal protein S1 [Escherichia coli KTE139]
gi|431621879|gb|ELI90669.1| 30S ribosomal protein S1 [Escherichia coli KTE145]
gi|431630200|gb|ELI98538.1| 30S ribosomal protein S1 [Escherichia coli KTE150]
gi|431633069|gb|ELJ01351.1| 30S ribosomal protein S1 [Escherichia coli KTE148]
gi|431636226|gb|ELJ04384.1| 30S ribosomal protein S1 [Escherichia coli KTE153]
gi|431648910|gb|ELJ16277.1| 30S ribosomal protein S1 [Escherichia coli KTE160]
gi|431650547|gb|ELJ17865.1| 30S ribosomal protein S1 [Escherichia coli KTE163]
gi|431661189|gb|ELJ28005.1| 30S ribosomal protein S1 [Escherichia coli KTE166]
gi|431663997|gb|ELJ30739.1| 30S ribosomal protein S1 [Escherichia coli KTE167]
gi|431664893|gb|ELJ31621.1| 30S ribosomal protein S1 [Escherichia coli KTE168]
gi|431676024|gb|ELJ42148.1| 30S ribosomal protein S1 [Escherichia coli KTE174]
gi|431677679|gb|ELJ43753.1| 30S ribosomal protein S1 [Escherichia coli KTE176]
gi|431680904|gb|ELJ46717.1| 30S ribosomal protein S1 [Escherichia coli KTE177]
gi|431691419|gb|ELJ56879.1| 30S ribosomal protein S1 [Escherichia coli KTE179]
gi|431692731|gb|ELJ58155.1| 30S ribosomal protein S1 [Escherichia coli KTE180]
gi|431695454|gb|ELJ60761.1| 30S ribosomal protein S1 [Escherichia coli KTE232]
gi|431708698|gb|ELJ73206.1| 30S ribosomal protein S1 [Escherichia coli KTE88]
gi|431708971|gb|ELJ73472.1| 30S ribosomal protein S1 [Escherichia coli KTE82]
gi|431719787|gb|ELJ83837.1| 30S ribosomal protein S1 [Escherichia coli KTE90]
gi|431724589|gb|ELJ88506.1| 30S ribosomal protein S1 [Escherichia coli KTE94]
gi|431725097|gb|ELJ89008.1| 30S ribosomal protein S1 [Escherichia coli KTE95]
gi|431732241|gb|ELJ95697.1| 30S ribosomal protein S1 [Escherichia coli KTE97]
gi|431735721|gb|ELJ99067.1| 30S ribosomal protein S1 [Escherichia coli KTE99]
gi|432349174|gb|ELL43604.1| 30S ribosomal protein S1 [Escherichia coli J96]
gi|441604532|emb|CCP98278.1| SSU ribosomal protein S1p [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|441651277|emb|CCQ02979.1| SSU ribosomal protein S1p [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|441712537|emb|CCQ07238.1| SSU ribosomal protein S1p [Escherichia coli Nissle 1917]
gi|443421534|gb|AGC86438.1| 30S ribosomal protein S1 [Escherichia coli APEC O78]
gi|444541786|gb|ELV21230.1| ribosomal protein S1 [Escherichia coli 99.0814]
gi|444547730|gb|ELV26287.1| ribosomal protein S1 [Escherichia coli 99.0815]
gi|444549350|gb|ELV27600.1| ribosomal protein S1 [Escherichia coli 09BKT078844]
gi|444558794|gb|ELV36055.1| ribosomal protein S1 [Escherichia coli 99.0816]
gi|444563997|gb|ELV40966.1| ribosomal protein S1 [Escherichia coli 99.0839]
gi|444570044|gb|ELV46594.1| ribosomal protein S1 [Escherichia coli 99.0848]
gi|444580859|gb|ELV56745.1| ribosomal protein S1 [Escherichia coli 99.1753]
gi|444584070|gb|ELV59741.1| ribosomal protein S1 [Escherichia coli 99.1775]
gi|444585357|gb|ELV60935.1| ribosomal protein S1 [Escherichia coli 99.1793]
gi|444598512|gb|ELV73431.1| ribosomal protein S1 [Escherichia coli ATCC 700728]
gi|444599043|gb|ELV73942.1| ribosomal protein S1 [Escherichia coli PA11]
gi|444606637|gb|ELV81244.1| ribosomal protein S1 [Escherichia coli 99.1805]
gi|444607315|gb|ELV81893.1| ribosomal protein S1 [Escherichia coli PA13]
gi|444613039|gb|ELV87303.1| ribosomal protein S1 [Escherichia coli PA19]
gi|444621591|gb|ELV95566.1| ribosomal protein S1 [Escherichia coli PA2]
gi|444630120|gb|ELW03785.1| ribosomal protein S1 [Escherichia coli PA8]
gi|444631313|gb|ELW04917.1| ribosomal protein S1 [Escherichia coli PA48]
gi|444631576|gb|ELW05174.1| ribosomal protein S1 [Escherichia coli PA47]
gi|444646723|gb|ELW19725.1| ribosomal protein S1 [Escherichia coli 7.1982]
gi|444648791|gb|ELW21705.1| ribosomal protein S1 [Escherichia coli 99.1781]
gi|444652209|gb|ELW24977.1| ribosomal protein S1 [Escherichia coli 99.1762]
gi|444661578|gb|ELW33874.1| ribosomal protein S1 [Escherichia coli PA35]
gi|444665774|gb|ELW37873.1| ribosomal protein S1 [Escherichia coli 3.4880]
gi|444671757|gb|ELW43539.1| ribosomal protein S1 [Escherichia coli 95.0083]
gi|444673884|gb|ELW45480.1| ribosomal protein S1 [Escherichia coli 99.0670]
gi|449321391|gb|EMD11404.1| 30S ribosomal protein S1 [Escherichia coli O08]
gi|449323822|gb|EMD13769.1| 30S ribosomal protein S1 [Escherichia coli SEPT362]
gi|449324018|gb|EMD13959.1| 30S ribosomal protein S1 [Escherichia coli S17]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|432371666|ref|ZP_19614717.1| 30S ribosomal protein S1 [Escherichia coli KTE11]
gi|430898809|gb|ELC20940.1| 30S ribosomal protein S1 [Escherichia coli KTE11]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + GS+++ + + T+E G+
Sbjct: 446 --ALNKKGSIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|402842615|ref|ZP_10891027.1| ribosomal protein S1 [Klebsiella sp. OBRC7]
gi|402279557|gb|EJU28342.1| ribosomal protein S1 [Klebsiella sp. OBRC7]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|300722536|ref|YP_003711826.1| 30S ribosomal protein S1 [Xenorhabdus nematophila ATCC 19061]
gi|297629043|emb|CBJ89628.1| 30S ribosomal subunit protein S1 [Xenorhabdus nematophila ATCC
19061]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L IKQL EDP L + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGIKQLAEDPFNNYLS--VNKKGAIVNGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GDEV K + +DR+ I LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATQVLNVGDEVEAKYVGVDRKNRVINLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + ++++
Sbjct: 520 RAKDEADEKDAIASVNKQEDTNFANNA 546
Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|283784737|ref|YP_003364602.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
gi|282948191|emb|CBG87758.1| 30S ribosomal protein S1 [Citrobacter rodentium ICC168]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVNGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEEANFSNNA 546
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|218710037|ref|YP_002417658.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
gi|218323056|emb|CAV19233.1| 30S ribosomal protein S1 [Vibrio splendidus LGP32]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNAAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + G +++ + + + TIE + G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAD--NKKGVLVNGTVTAVDAKGATIELIEGV 474
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D I+D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYLRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDEADEQEAMASLN 535
Query: 144 PQD----GSVISDS 153
D G+ ++D+
Sbjct: 536 KSDEGAFGNAMADA 549
>gi|223404|prf||0804233A protein S1
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|423201882|ref|ZP_17188461.1| 30S ribosomal protein S1 [Aeromonas veronii AER39]
gi|404615829|gb|EKB12788.1| 30S ribosomal protein S1 [Aeromonas veronii AER39]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+L +KQ+EEDP + L + G+++ + + IE G+
Sbjct: 430 SLGVKQIEEDPFNKYLAD--NKKGAIVKGKVTEVDAKGAVIELADGV 474
Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+ ++LS+
Sbjct: 465 GAVIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDS 153
+ +E ++ + Q+ V S++
Sbjct: 520 RAKDEADERVAIDNLNQQEEVVFSNA 545
>gi|397167778|ref|ZP_10491218.1| ribosomal protein S1 [Enterobacter radicincitans DSM 16656]
gi|396090596|gb|EJI88166.1| ribosomal protein S1 [Enterobacter radicincitans DSM 16656]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV--ALNKKGAIVNGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRVVSLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLCLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|334122618|ref|ZP_08496655.1| 30S ribosomal protein S1 [Enterobacter hormaechei ATCC 49162]
gi|419957630|ref|ZP_14473696.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae GS1]
gi|295096388|emb|CBK85478.1| SSU ribosomal protein S1P [Enterobacter cloacae subsp. cloacae NCTC
9394]
gi|333391977|gb|EGK63085.1| 30S ribosomal protein S1 [Enterobacter hormaechei ATCC 49162]
gi|388607788|gb|EIM36992.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae GS1]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|432464872|ref|ZP_19706977.1| 30S ribosomal protein S1 [Escherichia coli KTE205]
gi|432582966|ref|ZP_19819376.1| 30S ribosomal protein S1 [Escherichia coli KTE57]
gi|433071958|ref|ZP_20258651.1| 30S ribosomal protein S1 [Escherichia coli KTE129]
gi|433119458|ref|ZP_20305163.1| 30S ribosomal protein S1 [Escherichia coli KTE157]
gi|433182445|ref|ZP_20366739.1| 30S ribosomal protein S1 [Escherichia coli KTE85]
gi|430996429|gb|ELD12713.1| 30S ribosomal protein S1 [Escherichia coli KTE205]
gi|431119982|gb|ELE22981.1| 30S ribosomal protein S1 [Escherichia coli KTE57]
gi|431591821|gb|ELI62730.1| 30S ribosomal protein S1 [Escherichia coli KTE129]
gi|431647777|gb|ELJ15182.1| 30S ribosomal protein S1 [Escherichia coli KTE157]
gi|431710873|gb|ELJ75238.1| 30S ribosomal protein S1 [Escherichia coli KTE85]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G I+ V V+ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVNVGDIVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQL EDP + + + G++++ + + T+E G+
Sbjct: 427 ERISLGVKQLAEDPFNNWV--ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDIVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
>gi|50121515|ref|YP_050682.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
gi|49612041|emb|CAG75490.1| 30S ribosomal protein S1 [Pectobacterium atrosepticum SCRI1043]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQLFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLSEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +LN GD V K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRIEDATLVLNVGDSVEAKYTGVDRKNRVVSLSV 519
Query: 128 KQLEE 132
+ +E
Sbjct: 520 RAKDE 524
>gi|347534431|ref|YP_004841101.1| 30S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504487|gb|AEN99169.1| 40S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 405
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFS-----EKD--AVWNKYSSRVNVEDIFVGR-----DYGAF 70
G+ + VK+I+ E +L+ S EKD K + V DI G+ ++GAF
Sbjct: 159 GAELEVKIIEVVPEDNRLILSHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAF 218
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S+D + DIL G++V+VKV+ I+ E++RI+LSIKQL
Sbjct: 219 VDLGGIDGL------VHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPERNRISLSIKQL 272
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P + EK GS++ + +E LPG+
Sbjct: 273 QPGPWDDIEEKAAV--GSILDGTVKRLVDFGAFVEVLPGV 310
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ E ++ S K W+ + V I G D+GAF+ +
Sbjct: 248 GEDVKVKVLAIEPERNRISLSIKQLQPGPWDDIEEKAAVGSILDGTVKRLVDFGAFVEV- 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S I D+L G++++VKV+ ID E+ R+ LS+K LEE P
Sbjct: 307 ----LPGVEGLVHISQISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRLALSMKALEEAP 362
>gi|253990303|ref|YP_003041659.1| 30s ribosomal protein s1 [Photorhabdus asymbiotica]
gi|253781753|emb|CAQ84916.1| 30s ribosomal protein s1 [Photorhabdus asymbiotica]
Length = 569
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 344 VLDIDEERRRISLGLKQCKANPWQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L IKQL EDP L
Sbjct: 399 IDGLVHLSDISWNVTGEEAVRE-YKKGDEIAAVVLQVDAERERISLGIKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 458 S--VNKKGAIVTGKVTAVDAKGATVELADGV 486
Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 250 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 310 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 363
Query: 133 DP 134
+P
Sbjct: 364 NP 365
Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 424 GDEIAAVVLQVDAERERISLGIKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 482
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +LN GD V K +DR+ I LS++ +E
Sbjct: 483 -ADGV---EGYLRASEASRDRVEDATLVLNVGDAVEAKYTGVDRKNRVINLSVRAKDEAD 538
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + ++++
Sbjct: 539 EKDAIASVNKQEDANFANNA 558
>gi|213418378|ref|ZP_03351444.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 515
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 180 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 233
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 234 GLKQLGEDP 242
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 308 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 362
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 363 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 421
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 422 --ALNKKGAIVTGKVTAVDAKGATVELADGV 450
>gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
Length = 410
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 21/146 (14%)
Query: 29 KVIQA-NEEMKKLVFSE---KDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTG 84
+++QA +EE K +FSE D V K + N +GAFI L DGL
Sbjct: 181 EIVQAQHEEAAKKIFSELAAGDVVEGKVARMTN---------FGAFIDLGGVDGL----- 226
Query: 85 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIP 144
VHVSE+S+D + D+L G EV+VKV+ +D E+ RI+LSIKQ P + EK
Sbjct: 227 -VHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAV 285
Query: 145 QDGSVISDSSSMSSSNSNTIEPLPGL 170
G+V++ + +S +E PG+
Sbjct: 286 --GTVLTGTVKRLTSFGAFVEVFPGV 309
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K + W+ + V + G +GAF+ +
Sbjct: 247 GQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGTVLTGTVKRLTSFGAFVEV- 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I D+L G EV+VKV+ +D E+ R+ LSIK LEE P
Sbjct: 306 FPG----VEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKALEEAP 361
>gi|157146403|ref|YP_001453721.1| 30S ribosomal protein S1 [Citrobacter koseri ATCC BAA-895]
gi|157083608|gb|ABV13286.1| hypothetical protein CKO_02162 [Citrobacter koseri ATCC BAA-895]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --ALNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
Length = 441
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 20/166 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYG 68
G I VK+I+ + +++ S E+ A ++ S V D+ G D+G
Sbjct: 186 FVGQKIRVKIIELDPYKGRVILSRKQVLEAERTAARERFWSTVQEGDVLEGTVKSITDFG 245
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H+SE+S+ I+ +++EG+ ++VKV+++DREK +++L +K
Sbjct: 246 AFIDLGGVDGL------LHISEMSYGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLGLK 299
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
Q+ DP +++E+ P+ G+++ + + ++ +E PG+ +
Sbjct: 300 QVLPDP-WDSVEEKYPE-GAIVEGTVARLTTFGAFVELEPGVDGLI 343
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR--DYGAFIHL 73
G I VKV++ + E K+ K D+V KY VE V R +GAF+ L
Sbjct: 277 GERIKVKVLRLDREKGKVSLGLKQVLPDPWDSVEEKYPEGAIVEGT-VARLTTFGAFVEL 335
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ GL+H+S+++ I + ++++ GD V+VKVI +D + RI+LS++
Sbjct: 336 E-----PGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQNRRISLSLR 385
>gi|421497056|ref|ZP_15944247.1| 30S ribosomal protein S1 [Aeromonas media WS]
gi|407183949|gb|EKE57815.1| 30S ribosomal protein S1 [Aeromonas media WS]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+L +KQ+EEDP + L + G+++ + + IE G+
Sbjct: 430 SLGVKQIEEDPFNKYLSD--NKKGAIVKGKVTEVDAKGAVIELADGV 474
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR 65
+ ++++ E KG I V+Q + E +++ K + +NKY S I G+
Sbjct: 401 QGEEAVREFKKG---DEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGAIVKGK 457
Query: 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+
Sbjct: 458 VTEVDAKGAVIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512
Query: 121 SRITLSIKQLEE 132
++LS++ +E
Sbjct: 513 RTVSLSVRAKDE 524
>gi|296103087|ref|YP_003613233.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392978367|ref|YP_006476955.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. dissolvens
SDM]
gi|401675428|ref|ZP_10807421.1| 30S ribosomal protein S1 [Enterobacter sp. SST3]
gi|401763027|ref|YP_006578034.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|295057546|gb|ADF62284.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392324300|gb|AFM59253.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. dissolvens
SDM]
gi|400174561|gb|AFP69410.1| 30S ribosomal protein S1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400217406|gb|EJO48299.1| 30S ribosomal protein S1 [Enterobacter sp. SST3]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 15/133 (11%)
Query: 45 KDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--Q 97
K+ W +++ N D G+ D+G FI L DG + GLVH+S++SW++ +
Sbjct: 350 KNNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEE 404
Query: 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ +GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ +
Sbjct: 405 AVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVNGKVTAV 461
Query: 158 SSNSNTIEPLPGL 170
+ T+E G+
Sbjct: 462 DAKGATVELADGV 474
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +LN GD+V K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLNVGDDVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKN 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|146306885|ref|YP_001187350.1| 30S ribosomal protein S1 [Pseudomonas mendocina ymp]
gi|330502874|ref|YP_004379743.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
gi|145575086|gb|ABP84618.1| SSU ribosomal protein S1P [Pseudomonas mendocina ymp]
gi|328917160|gb|AEB57991.1| 30S ribosomal protein S1 [Pseudomonas mendocina NK-01]
Length = 560
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P++ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPENTRVMARVTNLT 288
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKTNP 353
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISVDRKSRVISLSIK 520
>gi|37525567|ref|NP_928911.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36784995|emb|CAE13915.1| 30S ribosomal protein S1 [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQLFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L IKQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGIKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGIKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ G + SE S D ++D +LN GD V K +DR+ I LS++ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRVEDATLVLNVGDAVEAKYTGVDRKNRVINLSVRAKDEAD 526
Query: 135 LLETLEKVIPQDGSVISDSS 154
+ + V Q+ + ++++
Sbjct: 527 EKDAIASVNKQEDANFANNA 546
Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|422332269|ref|ZP_16413283.1| 30S ribosomal protein S1 [Escherichia coli 4_1_47FAA]
gi|373246818|gb|EHP66268.1| 30S ribosomal protein S1 [Escherichia coli 4_1_47FAA]
Length = 326
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
>gi|436592333|ref|ZP_20512182.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434978598|gb|ELL70615.1| 30S ribosomal protein S1, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
Length = 467
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 16/116 (13%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>gi|56460463|ref|YP_155744.1| 30S ribosomal protein S1 [Idiomarina loihiensis L2TR]
gi|56179473|gb|AAV82195.1| Ribosomal protein S1 [Idiomarina loihiensis L2TR]
Length = 560
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 16/120 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V V++ +EE +++ K W +++ N + G+ D+G FI L D
Sbjct: 328 VEVMVLEIDEERRRISLGLKQCKPNPWEEFAKNHNKGEQVTGKIKSITDFGIFIGL---D 384
Query: 78 GLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
G + GLVH+S++SW+ + +RD +G+EV V+++D E+ RI+L IKQLEEDP
Sbjct: 385 G--GIDGLVHLSDISWNATGEEAVRD-YKKGEEVTAVVMQVDAERERISLGIKQLEEDPF 441
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W ++R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWADIANRYPEGHRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ ++N D V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNVHPSKVVNLDDTVEVMVLEIDEERRRISLGLKQCKP 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 35.4 bits (80), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G V +++S D ++D L+ GD + + + +DR+ ++LSI+ +E E +E V
Sbjct: 476 GYVRAADISRDRVEDASTELSVGDSIEARFMGVDRKNRTLSLSIRAKDEVEEKEAVESVN 535
Query: 144 PQDGSVISDSSSMSSS 159
Q S +S+M+ +
Sbjct: 536 KQQDSGSGLNSAMAEA 551
>gi|330830010|ref|YP_004392962.1| 30S ribosomal subunit protein S1 [Aeromonas veronii B565]
gi|406676711|ref|ZP_11083896.1| 30S ribosomal protein S1 [Aeromonas veronii AMC35]
gi|423209287|ref|ZP_17195841.1| 30S ribosomal protein S1 [Aeromonas veronii AER397]
gi|328805146|gb|AEB50345.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
component of the degradosome [Aeromonas veronii B565]
gi|404617145|gb|EKB14081.1| 30S ribosomal protein S1 [Aeromonas veronii AER397]
gi|404625025|gb|EKB21842.1| 30S ribosomal protein S1 [Aeromonas veronii AMC35]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPL 135
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+ ++LS+
Sbjct: 465 GAIIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKNRTVSLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDS 153
+ +E ++ + Q+ V S++
Sbjct: 520 RAKDEADERVAIDNLNQQEEVVFSNA 545
>gi|145298754|ref|YP_001141595.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418360897|ref|ZP_12961560.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|142851526|gb|ABO89847.1| ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356687880|gb|EHI52454.1| 30S ribosomal protein S1 [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI
Sbjct: 376 DFGIFIGL---DG--GIDGLVHLSDISWNNQGEEAVRE-FKKGDEIEAVVLQVDPERERI 429
Query: 124 TLSIKQLEEDPL 135
+L +KQ+EEDP
Sbjct: 430 SLGVKQIEEDPF 441
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR 65
+ ++++ E KG I V+Q + E +++ K + +NKY S I G+
Sbjct: 401 QGEEAVREFKKG---DEIEAVVLQVDPERERISLGVKQIEEDPFNKYLSDNKKGAIVKGK 457
Query: 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
GA I L DG+ G + S+ + D ++D +L+ GDEV K + +DR+
Sbjct: 458 VTEVDAKGAVIEL--ADGV---EGYLRASDAARDRVEDATLVLSVGDEVEAKFMGVDRKN 512
Query: 121 SRITLSIKQLEE 132
++LS++ +E
Sbjct: 513 RTVSLSVRAKDE 524
>gi|357112501|ref|XP_003558047.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like
[Brachypodium distachyon]
Length = 401
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 222 IPLKFVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI------G 274
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 275 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 328
>gi|343510918|ref|ZP_08748109.1| 30S ribosomal protein S1 [Vibrio scophthalmi LMG 19158]
gi|343517333|ref|ZP_08754339.1| 30S ribosomal protein S1 [Vibrio sp. N418]
gi|342793657|gb|EGU29447.1| 30S ribosomal protein S1 [Vibrio sp. N418]
gi|342799864|gb|EGU35414.1| 30S ribosomal protein S1 [Vibrio scophthalmi LMG 19158]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G +++ + + + TIE G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAE--KKKGVLVNGTVTAVDAKGATIELEEGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VSE++ D ++D IL+ GD V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRVSEIARDRVEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDEADEQEAMASIN 535
Query: 144 PQDGSVISDSSS 155
QD + ++ +
Sbjct: 536 KQDDAAFGNAMA 547
>gi|417951800|ref|ZP_12594885.1| 30S ribosomal protein S1 [Vibrio splendidus ATCC 33789]
gi|342803752|gb|EGU39101.1| 30S ribosomal protein S1 [Vibrio splendidus ATCC 33789]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ +D +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVAGEDAVREYKKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + G +++ + + + TIE + G+
Sbjct: 428 RISLGVKQMENDPFNAYVAD--NKKGVLVNGTVTAVDAKGATIELIEGV 474
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
G + SEVS D I+D IL+ GD V K +DR+ I LSIK +E
Sbjct: 476 GYIRASEVSRDRIEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDE 524
>gi|187932250|ref|YP_001892235.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187713159|gb|ACD31456.1| 30S ribosomal protein S1 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
ITLSIK ++ED
Sbjct: 515 SITLSIKAVDED 526
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWSEFEKNYKPGD 365
>gi|254368625|ref|ZP_04984641.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC022]
gi|157121528|gb|EDO65719.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC022]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
ITLSIK ++ED
Sbjct: 515 SITLSIKAVDED 526
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWSEFEKNYKPGD 365
>gi|387823727|ref|YP_005823198.1| 30S ribosomal protein S1 [Francisella cf. novicida 3523]
gi|328675326|gb|AEB28001.1| SSU ribosomal protein S1p [Francisella cf. novicida 3523]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
I LSIK ++ED
Sbjct: 515 SIALSIKAVDED 526
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWSEFEKNYKPGD 365
>gi|254876014|ref|ZP_05248724.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842035|gb|EET20449.1| 30S ribosomal protein S1 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DI 61
P K+I E+ KG + ++ N +++++ S K + + + +N+ ++
Sbjct: 401 PAKAIKELKKG---DDVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVKGNV 457
Query: 62 FVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
+D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DADNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
I LSIK ++ED
Sbjct: 515 SIALSIKAVDED 526
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
WN++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WNEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GD+V ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDDVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRAN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWNEFEKNYKPGD 365
>gi|409200055|ref|ZP_11228258.1| 30S ribosomal protein S1 [Pseudoalteromonas flavipulchra JG1]
Length = 555
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLNNKGDQVSGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEEAVRE-YKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ++ DP L+ + G+++ + + T+E + G+
Sbjct: 428 RISLGVKQIDADPFTNYLDA--NKKGAIVKGKVTEVDAKGATVELIEGV 474
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKTRVSLGLKQLGEDPWAAIAGRYPEGAKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V++++ + ++D ++EGDE+ K + +DR+ I+LS+K + E E LEK +
Sbjct: 476 GYIRVADIAQERVEDATAAVSEGDEIEAKFVGVDRKNRTISLSVKAIYEAEEKEVLEK-L 534
Query: 144 PQDGSVISDSSSMSSSNS 161
+D ++ + + N+
Sbjct: 535 KKDEPAFENAMAAAFKNA 552
>gi|343504831|ref|ZP_08742505.1| 30S ribosomal protein S1 [Vibrio ichthyoenteri ATCC 700023]
gi|342810447|gb|EGU45530.1| 30S ribosomal protein S1 [Vibrio ichthyoenteri ATCC 700023]
Length = 556
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + + G +++ + + + TIE G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAE--KKKGVLVNGTVTAVDAKGATIELEEGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + VSE++ D ++D IL+ G+ V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRVSEIARDRVEDASLILSVGESVEAKFTGVDRKNRVINLSIKAKDEADEQEAMASIN 535
Query: 144 PQDGSVISDSSS 155
QD + ++ +
Sbjct: 536 KQDDAAFGNAMA 547
>gi|290473875|ref|YP_003466749.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
gi|289173182|emb|CBJ79955.1| 30S ribosomal subunit protein S1 [Xenorhabdus bovienii SS-2004]
Length = 557
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKNDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L IKQL EDP L
Sbjct: 387 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGIKQLAEDPFNNYL 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 S--VNKKGTIVNGKVTAVDAKGATVELADGV 474
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +LN GDEV K + +DR+ + LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRIEDATQVLNVGDEVEAKYVGVDRKNRIVNLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + ++++
Sbjct: 520 RAKDEADEKDAIASVNKQEDTNFANNA 546
Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|374702050|ref|ZP_09708920.1| 30S ribosomal protein S1 [Pseudomonas sp. S9]
Length = 561
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPESTRVVARVTNLT 288
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 16/174 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
RI+L IKQLEEDP + + I G++++ + + I G+ A +
Sbjct: 428 RISLGIKQLEEDPFSDYV--AINDKGTIVTGTVKEVDAKGAVITLAEGIEATLK 479
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV V + DYG F L
Sbjct: 238 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRV-VARVTNLTDYGCFAEL 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 297 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 350
Query: 132 EDP 134
+P
Sbjct: 351 TNP 353
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVISLSIK 520
>gi|417382408|ref|ZP_12148382.1| SSU ribosomal protein S1p, partial [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353614953|gb|EHC66625.1| SSU ribosomal protein S1p, partial [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
Length = 380
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|89257160|ref|YP_514522.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
LVS]
gi|254366882|ref|ZP_04982920.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
gi|290953358|ref|ZP_06557979.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
URFT1]
gi|422939398|ref|YP_007012545.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC200]
gi|89144991|emb|CAJ80351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
LVS]
gi|134252710|gb|EBA51804.1| ribosomal protein S1 [Francisella tularensis subsp. holarctica 257]
gi|407294549|gb|AFT93455.1| 30S ribosomal protein S1 [Francisella tularensis subsp. holarctica
FSC200]
Length = 556
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
ITLSIK ++ED
Sbjct: 515 SITLSIKAVDED 526
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVCAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWSEFEKNYKPGD 365
>gi|118496773|ref|YP_897823.1| 30S ribosomal protein S1 [Francisella novicida U112]
gi|194324082|ref|ZP_03057857.1| 30S ribosomal protein S1 [Francisella novicida FTE]
gi|208779955|ref|ZP_03247298.1| ribosomal protein S1 [Francisella novicida FTG]
gi|254372138|ref|ZP_04987631.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375284|ref|ZP_04990764.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
gi|385792087|ref|YP_005825063.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|118422679|gb|ABK89069.1| 30S ribosomal protein S1 [Francisella novicida U112]
gi|151569869|gb|EDN35523.1| 30S ribosomal protein S1 [Francisella novicida GA99-3549]
gi|151573002|gb|EDN38656.1| 30S ribosomal protein S1 [Francisella novicida GA99-3548]
gi|194321979|gb|EDX19462.1| 30S ribosomal protein S1 [Francisella tularensis subsp. novicida
FTE]
gi|208743959|gb|EDZ90260.1| ribosomal protein S1 [Francisella novicida FTG]
gi|328676233|gb|AEB27103.1| SSU ribosomal protein S1p [Francisella cf. novicida Fx1]
Length = 556
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
I LSIK ++ED
Sbjct: 515 SIALSIKAVDED 526
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G EV V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEVEVIVLELDADNHRISLGIKQCRPN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWSEFEKNYKPGD 365
>gi|56707348|ref|YP_169244.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110669818|ref|YP_666375.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC198]
gi|254370028|ref|ZP_04986035.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC033]
gi|254874185|ref|ZP_05246895.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716548|ref|YP_005304884.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725231|ref|YP_005317417.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
TI0902]
gi|385793945|ref|YP_005830351.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
NE061598]
gi|421754800|ref|ZP_16191764.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700075]
gi|56603840|emb|CAG44816.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320151|emb|CAL08199.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC198]
gi|151568273|gb|EDN33927.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
FSC033]
gi|254840184|gb|EET18620.1| 30S ribosomal protein S1 rpsA [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158480|gb|ADA77871.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
NE061598]
gi|377826680|gb|AFB79928.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
TI0902]
gi|377828225|gb|AFB78304.1| SSU ribosomal protein S1p [Francisella tularensis subsp. tularensis
TIGB03]
gi|409090280|gb|EKM90301.1| 30S ribosomal protein S1 [Francisella tularensis subsp. tularensis
80700075]
Length = 556
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL H+T ++SW I D+L+ G E+ VKVIK D+EK RI+L
Sbjct: 204 DFGAFIDLGGVDGLLHIT------DISWSRISHPTDVLSIGQEIDVKVIKFDKEKQRISL 257
Query: 126 SIKQLEEDPLL 136
IKQL EDP L
Sbjct: 258 GIKQLGEDPWL 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR- 65
P K+I E+ KG + ++ N +++++ S K + + + +N+ + G+
Sbjct: 401 PAKAIKELKKG---DEVEAVLVSVNTDLERIALSMKQLSEDPFKNFINIHPKGSLVTGKV 457
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
D GA + L D ++ G + +SE+S + +D+RD L+EG EV ++I ID +K
Sbjct: 458 TKVQDNGAVVML---DEDNNIDGFIRISEISAEHTKDVRDELSEGQEVEARIINIDAKKR 514
Query: 122 RITLSIKQLEED 133
ITLSIK ++ED
Sbjct: 515 SITLSIKAVDED 526
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+++ D G+ ++G FI L + GLVH+S+V+WD L
Sbjct: 354 WSEFEKNYKPGDKVTGKIRSITEFGVFIGLE-----GGIDGLVHISDVAWDNPAKAIKEL 408
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+GDEV ++ ++ + RI LS+KQL EDP
Sbjct: 409 KKGDEVEAVLVSVNTDLERIALSMKQLSEDPF 440
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKVI+ ++E +++ K + W ++ + V +G DYG F+ L+
Sbjct: 238 GQEIDVKVIKFDKEKQRISLGIKQLGEDPWLNIANELPVGAKLMGTVTNITDYGCFVKLK 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH SE+ W + + ++ G E+ V V+++D + RI+L IKQ +
Sbjct: 298 -----EGIEGLVHTSEMDWTNKNVNPHKAVSIGQEIEVIVLELDADNHRISLGIKQCRPN 352
Query: 134 PLLETLEKVIPQD 146
P E + P D
Sbjct: 353 PWSEFEKNYKPGD 365
>gi|392543539|ref|ZP_10290676.1| 30S ribosomal protein S1 [Pseudoalteromonas piscicida JCM 20779]
Length = 555
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLNNKGDQVSGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEEAVRE-YKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ++ DP L+ + G+++ + + T+E + G+
Sbjct: 428 RISLGVKQIDADPFTNYLDA--NKKGAIVKGKVTEVDAKGATVELIEGV 474
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKTRVSLGLKQLGEDPWAAIAGRYPEGAKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V++++ + ++D ++EGDE+ K + +DR+ I+LS+K + E E LEK +
Sbjct: 476 GYIRVADIAQERVEDATAAVSEGDEIEAKFVGVDRKNRTISLSVKAIYEAEEKEVLEK-L 534
Query: 144 PQDGSVISDSSSMSSSNS 161
+D ++ + + N+
Sbjct: 535 KKDEPAFENAMAAAFKNA 552
>gi|339451714|ref|ZP_08655084.1| 40S ribosomal protein S1 [Leuconostoc lactis KCTC 3528]
Length = 396
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR--DYGAFIHLRFPDGLYHL 82
I+S K + A E +L V++K S VE V R D+GAF+ L DGL
Sbjct: 173 ILSRKAVAAQERAAQLA-----EVFSKLSVGEVVEGT-VARLTDFGAFVDLGGVDGL--- 223
Query: 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
VHVSE+S D ++ D+L +GD+V VK++ +D EK RI+LSIK + P E +++
Sbjct: 224 ---VHVSEISHDRVKKPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQI 280
Query: 143 IPQDGSVISDSSSMSSSNSNTIEPLPGL 170
GSV+ + +E LPG+
Sbjct: 281 AA--GSVLEGTVKRVKDFGAFVEILPGI 306
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 244 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 303 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 358
>gi|329298228|ref|ZP_08255564.1| 30S ribosomal protein S1 [Plautia stali symbiont]
Length = 557
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPGEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW+ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 387 IDGLVHLSDISWNATGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYI 445
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 446 --TLNKKGAIVTGKVTAVDAKGATVELADGV 474
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D I+D +L+ GD+V+ K +DR+ ++LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASLDRIEDATQVLSVGDDVKAKFTGVDRKNRVVSLSV 519
Query: 128 K---QLEEDPLLETLEKVIPQDGSVISDSSSMSSS 159
+ Q +E + T+ +DGS S++M+ +
Sbjct: 520 RAKDQADEKEAINTV-NTKQEDGSF---SNAMAEA 550
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|407792840|ref|ZP_11139876.1| 30S ribosomal protein S1 [Idiomarina xiamenensis 10-D-4]
gi|407217098|gb|EKE86934.1| 30S ribosomal protein S1 [Idiomarina xiamenensis 10-D-4]
Length = 558
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 16/121 (13%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 76
++ V V++ +EE +++ K W +++ + + G+ D+G FI L
Sbjct: 327 VVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKNHDKAEKVTGKIKSITDFGIFIGL--- 383
Query: 77 DGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG + GLVH+S++SW+ + +R+ +G+EV V+++D E+ RI+L IKQLEEDP
Sbjct: 384 DG--GIDGLVHLSDISWNATGEEAVRE-YKKGEEVTAVVLQVDAERERISLGIKQLEEDP 440
Query: 135 L 135
Sbjct: 441 F 441
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W ++R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRERTRVSLGLKQLGEDPWADIANRYPEGTRLQGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ ++N D V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNVHPSKVVNLDDVVEVMVLEIDEERRRISLGLKQCKP 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWEE 356
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S D I+D +LN GD+V + + +DR+ ++LSI+ +E E +++V
Sbjct: 476 GYIRVADISRDRIEDASTVLNVGDDVEARFMGVDRKNRTLSLSIRAKDEAEEKEAVDQVN 535
Query: 144 PQDGSVISDSSSMSSSNSNTIEP 166
Q DSS ++S+ ++ +
Sbjct: 536 KQ-----QDSSGINSAMADAFKA 553
>gi|109701062|gb|ABG40982.1| SSU ribosomal protein S1P [Pseudoalteromonas atlantica T6c]
Length = 579
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 226 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 279
Query: 126 SIKQLEEDPLLETLEK 141
+KQ+ DP E E+
Sbjct: 280 GMKQMGNDPWQEIAER 295
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + D G+
Sbjct: 335 NKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIK 394
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+
Sbjct: 395 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYKKGDEISAVVLQVDPERE 449
Query: 122 RITLSIKQLEEDPLLETL 139
RI+L +KQ+EEDP + L
Sbjct: 450 RISLGVKQIEEDPFNQYL 467
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I+VKV++ ++E ++ K + W + + R G DYG F+ +
Sbjct: 260 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIE 319
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 320 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKP 373
Query: 133 DPLLE 137
+P E
Sbjct: 374 NPWEE 378
>gi|95929492|ref|ZP_01312235.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
gi|95134608|gb|EAT16264.1| ribosomal protein S1 [Desulfuromonas acetoxidans DSM 684]
Length = 582
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW + DIL GD + VKV+K DREK R++L
Sbjct: 226 DYGAFIDLGGIDGLLHIT------DMSWGRVSHPSDILAVGDSINVKVLKFDREKERVSL 279
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQ+ DP L EK P + V S++
Sbjct: 280 GLKQITPDPWLSVAEK-YPTEARVTGKVVSLT 310
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I+VKV++ + E +++ K +V KY + V V DYGAFI L
Sbjct: 260 GDSINVKVLKFDREKERVSLGLKQITPDPWLSVAEKYPTEARVTGKVVSLTDYGAFIELE 319
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+HVSE+SW I+ +L+ GDEV V+ +D E RI+L +KQ+E +
Sbjct: 320 -----EGVEGLIHVSEMSWTKRIKHPNKLLSIGDEVETVVLAMDTENRRISLGLKQVEPN 374
Query: 134 P 134
P
Sbjct: 375 P 375
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 61 IFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDRE 119
IFVG D G + GLVH+S++SW I+ ++ +GD V+ V+ IDR+
Sbjct: 401 IFVGVDEG-------------IDGLVHISDLSWTKRIKHPSELYKKGDLVKAVVLNIDRD 447
Query: 120 KSRITLSIKQLEEDPLLETLEKVIPQDGSVI 150
R +L +KQL +DP E+ P G++I
Sbjct: 448 NERFSLGVKQLTQDPWQIIPEQYAP--GTII 476
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
GL+HVSE+S D + +D GDE+ V+ +D + +I LSIK L
Sbjct: 498 GLIHVSEISKDKVDSPKDFAKVGDELEAVVLHVDTNEHKIALSIKHL 544
>gi|429094807|ref|ZP_19157324.1| SSU ribosomal protein S1p [Cronobacter dublinensis 1210]
gi|426740084|emb|CCJ83437.1| SSU ribosomal protein S1p [Cronobacter dublinensis 1210]
Length = 420
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 67 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 120
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 121 GLKQLGEDP 129
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L DG
Sbjct: 195 VLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--G 249
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP +
Sbjct: 250 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYV 308
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + G++++ + + T+E G+
Sbjct: 309 --ALNKKGAIVTGKVTAVDAKGATVELADGV 337
Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 101 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTRLTGRVTNLTDYGCFVEIE 160
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 161 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 214
Query: 133 DP 134
+P
Sbjct: 215 NP 216
>gi|384246163|gb|EIE19654.1| S1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 400
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 72/120 (60%), Gaps = 11/120 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWN-KYSSRVNVEDIFVG-----RDYGAFIHLR 74
L G +++K+++ +EE +LV S + +N + + V ++ G + YGAF++L
Sbjct: 240 LLGETLNLKILELDEEKDRLVLSNRKNAFNTRRQINLQVGEVVDGTVATLQPYGAFVNLG 299
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++ GL+H+S++S D I + ++L G +V+V ++ +D+EK R++LS K+LE P
Sbjct: 300 -----DNMNGLLHISQISHDRISSVENVLQVGQKVKVMILTLDKEKGRVSLSTKKLEPTP 354
>gi|410625445|ref|ZP_11336230.1| small subunit ribosomal protein S1 [Glaciecola mesophila KMM 241]
gi|410155041|dbj|GAC22999.1| small subunit ribosomal protein S1 [Glaciecola mesophila KMM 241]
Length = 579
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 226 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 279
Query: 126 SIKQLEEDPLLETLEK 141
+KQ+ DP E E+
Sbjct: 280 GMKQMGNDPWQEIAER 295
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + D G+
Sbjct: 335 NKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIK 394
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+
Sbjct: 395 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYKKGDEISAVVLQVDPERE 449
Query: 122 RITLSIKQLEEDPLLETL 139
RI+L +KQ+EEDP + L
Sbjct: 450 RISLGVKQIEEDPFNQYL 467
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I+VKV++ ++E ++ K + W + + R G DYG F+ +
Sbjct: 260 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIE 319
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 320 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKP 373
Query: 133 DP 134
+P
Sbjct: 374 NP 375
>gi|118594697|ref|ZP_01552044.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
gi|118440475|gb|EAV47102.1| 30S ribosomal protein S1 [Methylophilales bacterium HTCC2181]
Length = 503
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 8 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-RD 66
KE + + +I K ++S K + M++ +++++V NV+ I D
Sbjct: 160 KECELKVIKIDKKRNNVVVSRKAV-----MEEQSGTDRESVLESIVEGANVKGIIKNITD 214
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YGAF+ L DGL H+T L +W I+ +ILN GDE+ +V+K D+EK+R++L
Sbjct: 215 YGAFVDLGGIDGLLHITDL------AWKRIKHPSEILNVGDEIEARVLKFDQEKNRVSLG 268
Query: 127 IKQLEEDP 134
+KQL+EDP
Sbjct: 269 LKQLDEDP 276
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V +++ +E+ ++L K W ++S V++ G+
Sbjct: 323 NKNIHPTKAVQLGDEVEVMILEIDEDRRRLSLGMKQCQANPWEDFASNHKVDEKITGQIK 382
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L P + GL+H+S++SW D ++ + DE+ +I ID EK
Sbjct: 383 SITDFGIFIGL--PG---EIDGLIHLSDISWTDSGEEAVKKYKKADELEAIIISIDVEKE 437
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQL E+P E EK
Sbjct: 438 RISLGIKQLAENPNPEIAEK 457
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I +V++ ++E ++ K + W R V+ G+ DYGAFI +
Sbjct: 248 GDEIEARVLKFDQEKNRVSLGLKQLDEDPWVGLGRRYPVKTKLFGKVSNLTDYGAFIEIE 307
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I + GDEV V +++ID ++ R++L +KQ +
Sbjct: 308 -----TGIEGLVHVSEMDW-TNKNIHPTKAVQLGDEVEVMILEIDEDRRRLSLGMKQCQA 361
Query: 133 DP 134
+P
Sbjct: 362 NP 363
>gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 415
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 30/166 (18%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYG 68
L G + +K+I+ N +L+ SE+ AV SR + + GR D+G
Sbjct: 189 LVGQTLPLKIIEINRSRNRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGRVTSLCDFG 248
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ + DGL VH+SE+SW ++ ++L GD V V ++ +D +K RI LSIK
Sbjct: 249 AFVDIGGADGL------VHLSELSWSRVKHPEEVLKVGDAVSVYILSVDEDKKRIALSIK 302
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
+ + +P + ++D + S S + L GA
Sbjct: 303 RTQAEPW------------TTVTDRYQIGQSVSGVVTQLTAFGAFV 336
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G +SV ++ +E+ K++ S K W + R + G +GAF+ R
Sbjct: 280 GDAVSVYILSVDEDKKRIALSIKRTQAEPWTTVTDRYQIGQSVSGVVTQLTAFGAFV--R 337
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GL+H+SE+S + IQ RD++NEGD V ++I+ID + RI LS +
Sbjct: 338 LEDGI---EGLIHISEMSDERIQHPRDVINEGDSVSARIIRIDPTRKRIGLSTR 388
>gi|332306876|ref|YP_004434727.1| 30S ribosomal protein S1 [Glaciecola sp. 4H-3-7+YE-5]
gi|410640736|ref|ZP_11351266.1| small subunit ribosomal protein S1 [Glaciecola chathamensis S18K6]
gi|410648186|ref|ZP_11358600.1| small subunit ribosomal protein S1 [Glaciecola agarilytica NO2]
gi|332174205|gb|AEE23459.1| ribosomal protein S1 [Glaciecola sp. 4H-3-7+YE-5]
gi|410132205|dbj|GAC06999.1| small subunit ribosomal protein S1 [Glaciecola agarilytica NO2]
gi|410139764|dbj|GAC09453.1| small subunit ribosomal protein S1 [Glaciecola chathamensis S18K6]
Length = 579
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 226 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 279
Query: 126 SIKQLEEDPLLETLEK 141
+KQ+ DP E E+
Sbjct: 280 GMKQMGNDPWQEIAER 295
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + D G+
Sbjct: 335 NKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIK 394
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+
Sbjct: 395 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYKKGDEISAVVLQVDPERE 449
Query: 122 RITLSIKQLEEDPLLETL 139
RI+L +KQ+EEDP + L
Sbjct: 450 RISLGVKQIEEDPFNQYL 467
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I+VKV++ ++E ++ K + W + + R G DYG F+ +
Sbjct: 260 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIE 319
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 320 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKP 373
Query: 133 DPLLE 137
+P E
Sbjct: 374 NPWEE 378
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V++++ + ++D ++ + GDE+ K + +DR+ + LS+K ++ E L+KV
Sbjct: 498 GYIRVTDLARERVEDASEVASVGDEIEAKFMGVDRKNRIVNLSVKAKDQADEKEALDKVN 557
Query: 144 PQD 146
Q+
Sbjct: 558 QQE 560
>gi|331656982|ref|ZP_08357944.1| ribosomal protein S1 [Escherichia coli TA206]
gi|331055230|gb|EGI27239.1| ribosomal protein S1 [Escherichia coli TA206]
Length = 366
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 19/135 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DPLLETLEKVIPQDG 147
+P + E PQ G
Sbjct: 352 NPWQQFAE---PQQG 363
>gi|285018380|ref|YP_003376091.1| 30S ribosomal protein S1 [Xanthomonas albilineans GPE PC73]
gi|283473598|emb|CBA16101.1| 30s ribosomal protein s1 [Xanthomonas albilineans GPE PC73]
Length = 559
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVG-----RDYG 68
L G + K+I+ + + +V S + V +++S ++N I G DYG
Sbjct: 148 LDGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEEREQLMDKLNEGTILKGVVKNLTDYG 207
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L +K
Sbjct: 208 AFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSLGLK 261
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
QL EDP + + + P + V S+++ + +E PG+
Sbjct: 262 QLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDIVRNFKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -----PGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|384081916|ref|ZP_09993091.1| 30S ribosomal protein S1 [gamma proteobacterium HIMB30]
Length = 561
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T ++SW I+ +++ GDEV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMSWKRIKHPSEVVAVGDEVDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP +E
Sbjct: 258 GLKQLGEDPWIE 269
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L DG + GL+H+S++SW ++ R+ +G+++ ++ +D E+ RI
Sbjct: 376 DFGVFIGL---DG--GIDGLIHLSDLSWSEPGEVAVRN-FKKGEDLEAVILAVDPERERI 429
Query: 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+L +KQLEEDP+ L + G+V+ + + + T++ G+ A+ +
Sbjct: 430 SLGVKQLEEDPMGGFLSGT--EKGAVVKGTVTEVEAKQATVDLGDGVLAVLK 479
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G + VKV++ + E ++ K + N+Y ++RVN I DYG F +
Sbjct: 238 GDEVDVKVLKFDRERNRVSLGLKQLGEDPWIEIKNRYPVNTRVNAR-ITNLTDYGCFAEI 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W +++ I++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 297 E-----EGVEGLVHVSEMDW-TNKNVHPSKIVSLGDEVEVMVLDIDEERRRISLGIKQCK 350
Query: 132 EDP 134
+P
Sbjct: 351 VNP 353
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 85 LVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
++ SE+S D ++D R++LN GDEV K+ +DR+ +I+LS++
Sbjct: 477 VLKASELSRDRVEDARNVLNVGDEVEAKIANVDRKTRQISLSVR 520
>gi|119477610|ref|ZP_01617760.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
gi|119449113|gb|EAW30353.1| 30S ribosomal protein S1 [marine gamma proteobacterium HTCC2143]
Length = 559
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K+IH G + V ++ +EE +++ K + W+ + + N D G
Sbjct: 313 NKNIHPSKVVNLGDEVEVMILDIDEERRRISLGIKQCMENPWDAFGRQFNKGDKISGGIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--AIDGLVHLSDISWNETGEDAVRKYKKGDEIETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K ++ +Y V+ DYG F +
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWVSITGRYPEGARVKATITNLTDYGCFAEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V ++ ID E+ RI+L IKQ E
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVMILDIDEERRRISLGIKQCME 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ G + SE+S D ++D R+ L EGDEV VK+I IDR+ I LSIK
Sbjct: 474 IEGTLKASEISRDKVEDARNALKEGDEVEVKIISIDRKNRTIALSIK 520
>gi|332706127|ref|ZP_08426198.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332355105|gb|EGJ34574.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 392
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +E+ +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 159 LVAQELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDI-- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N DE++V +I +D ++ RI+LS KQLE +P
Sbjct: 217 ----GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDADRGRISLSTKQLEPEP 271
>gi|317121948|ref|YP_004101951.1| RNA binding S1 domain-containing protein [Thermaerobacter
marianensis DSM 12885]
gi|315591928|gb|ADU51224.1| RNA binding S1 domain protein [Thermaerobacter marianensis DSM
12885]
Length = 598
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAFI L DGL +HVSE+ W I RD+L EGD ++VKV+++DRE+ RI+L
Sbjct: 394 DFGAFIDLGGVDGL------LHVSEMHWGRIDHPRDLLKEGDTIQVKVLRVDRERGRISL 447
Query: 126 SIKQLEEDP 134
S+K+L DP
Sbjct: 448 SLKELMPDP 456
Score = 43.5 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ S K+ + W R V G +GAF+ L
Sbjct: 428 GDTIQVKVLRVDRERGRISLSLKELMPDPWADAEQRYPVGATVKGTVVRLVPFGAFVRLE 487
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
P + GLVH+S+++ ++ +++ EG +V V+V+++ E RI+LS+
Sbjct: 488 -PG----VEGLVHISQLADHRVESPDEVVQEGQQVEVRVLRVQPEDRRISLSM 535
>gi|149391139|gb|ABR25587.1| 30S ribosomal protein S1 [Oryza sativa Indica Group]
Length = 217
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 38 LPLKFVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI------G 90
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 91 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 144
>gi|406986413|gb|EKE07010.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 343
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 17/133 (12%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV----NVEDIFVGR- 65
+ I E + G I VKVI A+ + +KL+FSEK+ VW + V V D+ G
Sbjct: 150 KNRILEHLRKFIGETIKVKVINADMDDEKLIFSEKE-VWEEEQKNVLDSYKVGDVVEGEV 208
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121
+GAFI +L GLVH+SE+ W I R++L GD+++ ++ ID KS
Sbjct: 209 SALTSFGAFIKFG-----KNLEGLVHISEIVWQRISHPREVLKVGDKIKAQI--IDLNKS 261
Query: 122 RITLSIKQLEEDP 134
+I LSIK+L +DP
Sbjct: 262 KIYLSIKRLVDDP 274
>gi|410619280|ref|ZP_11330185.1| small subunit ribosomal protein S1 [Glaciecola polaris LMG 21857]
gi|410161174|dbj|GAC34323.1| small subunit ribosomal protein S1 [Glaciecola polaris LMG 21857]
Length = 579
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 226 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 279
Query: 126 SIKQLEEDPLLETLEK 141
+KQ+ DP E E+
Sbjct: 280 GMKQMGNDPWQEIAER 295
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + D G+
Sbjct: 335 NKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIK 394
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+
Sbjct: 395 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYKKGDEISAVVLQVDPERE 449
Query: 122 RITLSIKQLEEDPLLETL 139
RI+L +KQ+EEDP + L
Sbjct: 450 RISLGVKQIEEDPFNQYL 467
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I+VKV++ ++E ++ K + W + + R G DYG F+ +
Sbjct: 260 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIE 319
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 320 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKP 373
Query: 133 DP 134
+P
Sbjct: 374 NP 375
>gi|392529403|ref|ZP_10276540.1| 30S ribosomal protein S1 [Carnobacterium maltaromaticum ATCC 35586]
Length = 402
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ NEE ++ S KD W R V G +GAF+ +
Sbjct: 247 GEEVQVKILSINEETGRISLSIKDTQPGPWENIEERAAVGSTLSGIVKRLTSFGAFVEV- 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+P + GLVH+S++S + I ++L+EGDE++VKV++++ R++LSIK LEE P
Sbjct: 306 YPG----VEGLVHISQISHNHIATPHEVLHEGDEIKVKVLEVNPTDQRLSLSIKALEEKP 361
Query: 135 LLETLEK 141
E EK
Sbjct: 362 ASEKSEK 368
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K +V +EK+ + +++ D G ++GAFI L DGL VH+S++S
Sbjct: 180 KAVVEAEKEVAKKEIMTKLVEGDTVTGTVARLTNFGAFIDLGGVDGL------VHISQIS 233
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ ++ D+L G+EV+VK++ I+ E RI+LSIK + P E+ GS +S
Sbjct: 234 YNHVKAPGDVLTVGEEVQVKILSINEETGRISLSIKDTQPGPWENIEERAAV--GSTLSG 291
Query: 153 SSSMSSSNSNTIEPLPGL 170
+S +E PG+
Sbjct: 292 IVKRLTSFGAFVEVYPGV 309
>gi|392411885|ref|YP_006448492.1| ribosomal protein S1 [Desulfomonile tiedjei DSM 6799]
gi|390625021|gb|AFM26228.1| ribosomal protein S1 [Desulfomonile tiedjei DSM 6799]
Length = 578
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 23/145 (15%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV-------EDIFVGR-----DYGAF 70
G V++ N + +V S K + + R N+ +FVG DYGAF
Sbjct: 167 GESFEFNVLKYNRKRGNIVLSRKPLLEKQKEERKNLILGTMEGSGLFVGTVKNITDYGAF 226
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL +H++++SW I D+L GD+++VKV+K D++K R++L +KQ+
Sbjct: 227 IDLGGIDGL------LHITDMSWGRINHPSDVLKVGDQIQVKVLKFDQDKERVSLGMKQI 280
Query: 131 EEDPLLETLEKVIPQD----GSVIS 151
+ DP E +E+ P++ G V+S
Sbjct: 281 QPDP-WENVEERYPKESEWTGKVVS 304
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ +++ +++ K W R E + G+ DYG F+ L
Sbjct: 256 GDQIQVKVLKFDQDKERVSLGMKQIQPDPWENVEERYPKESEWTGKVVSITDYGVFVELE 315
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+SE++W + ++ GDEV V V+ +D+E+ RI+L +KQL+ +
Sbjct: 316 -----KGVEGLVHISEMTWTKKPRHPSKLVQVGDEVDVMVLNVDKEQKRISLGMKQLKPN 370
Query: 134 P 134
P
Sbjct: 371 P 371
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYS 53
M+ + + P K + G + V V+ ++E K++ K D + +Y
Sbjct: 327 MTWTKKPRHPSKLVQ------VGDEVDVMVLNVDKEQKRISLGMKQLKPNPWDVIAERYP 380
Query: 54 SRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRV 111
+E I D+G F+ + + GLVH+S++SW I+ ++ +G V+
Sbjct: 381 EGTKIEGKIRNVTDFGVFVGID-----EGIDGLVHISDISWTQRIKHPGELYKKGQTVQA 435
Query: 112 KVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
V+ ID+E R +L IKQ++EDP ET+ P V +S++
Sbjct: 436 VVLNIDKENERFSLGIKQMQEDP-WETIPDRYPPGAKVRGKVTSVT 480
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+G F+ + + G++HVSE+S + + D EG+E+ V+K++++ +I L
Sbjct: 481 DFGVFLEIE-----EGIEGMIHVSELSKERVNSPSDFTKEGEELTAMVLKVNKKDKKIAL 535
Query: 126 SIKQLEE 132
SIK LE+
Sbjct: 536 SIKSLEK 542
>gi|359781415|ref|ZP_09284639.1| 30S ribosomal protein S1 [Pseudomonas psychrotolerans L19]
gi|359370479|gb|EHK71046.1| 30S ribosomal protein S1 [Pseudomonas psychrotolerans L19]
Length = 559
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W ++S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCRANPWEEFSGQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNETGEEAVRRFKKGDELDTVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ G++ SE+S D ++D R++L EGDEV K+I IDR+ I+LS+K + D E +
Sbjct: 473 EIEGVLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSVKSKDVDDEKEAM 531
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ +Y V+ DYG F L
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|452877435|ref|ZP_21954721.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa VRFPA01]
gi|452185817|gb|EME12835.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa VRFPA01]
Length = 530
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 288
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V+V+ +EE +++ K W +SS+ N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117
+ G++ SE+S D ++D R++L EG+EV K+I ID
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISID 509
>gi|386827958|ref|ZP_10115065.1| ribosomal protein S1 [Beggiatoa alba B18LD]
gi|386428842|gb|EIJ42670.1| ribosomal protein S1 [Beggiatoa alba B18LD]
Length = 556
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T ++SW ++ +++N GDEV VKV+K DRE+ R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMSWKRVKHPNEVVNVGDEVEVKVLKFDRERVRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQL EDP ++
Sbjct: 258 GLKQLGEDPWVD 269
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K++H G + V V+ +EE +++ K W+ +++ N D VG
Sbjct: 313 NKNVHPSKIVQVGDEVEVMVLDIDEERRRISLGIKQCQVNPWDGFAATHNKNDRVVGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G F+ L DG + GLVH+S++SW+ ++ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFVGL---DG--GIDGLVHLSDISWNETGEEAVRRYKKGDEIEAVVLAVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEKDPF 441
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W +++ I+ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----SGVEGLVHVSEMDW-TNKNVHPSKIVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCQVNP 353
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 26/113 (23%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L+ DG+ G + SE++ D ++D R +L EG+++ K I +DR+K I+LSI
Sbjct: 465 GAMIQLQ--DGV---EGYLRASELTRDRVEDARTLLKEGEDIEAKFIGVDRKKRVISLSI 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
K E D ++ + I D S P LGA +LL+E
Sbjct: 520 KAKETD-----------EESAAIQDYSRSQ----------PSLGATLGDLLKE 551
>gi|384173360|ref|YP_005554737.1| 30S ribosomal protein S1 [Arcobacter sp. L]
gi|345472970|dbj|BAK74420.1| 30S ribosomal protein S1 [Arcobacter sp. L]
Length = 550
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+V+VI+ N E K+L S K+ + K+++ V D+ G+ D+GAF+ +
Sbjct: 330 GEEINVEVIELNVEQKRLRVSLKNLQEKPFTKFTNEHKVGDVIKGKIATLTDFGAFVSIG 389
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DGL +H E SW+ + I +GDEV VK+IKID+EK I+LS+K++ + P
Sbjct: 390 EVDGL------LHNEEASWEPNAKCKTIFKKGDEVEVKIIKIDKEKENISLSVKEIADSP 443
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV-----GRDYGAFIHLR 74
G +SV V+ ++ + L S K A+ W + + V D YGAF+ L
Sbjct: 243 GDEVSVVVLSYDKAKQHLSLSIKAALSNPWEEIKDELEVGDTITVTVSNFESYGAFVDLG 302
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+H+SE+SW+ +++ +++L G+E+ V+VI+++ E+ R+ +S+K L+E
Sbjct: 303 -----NDIEGLLHISEISWNKNLKNPKELLTIGEEINVEVIELNVEQKRLRVSLKNLQEK 357
Query: 134 PL 135
P
Sbjct: 358 PF 359
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 24/174 (13%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-VEDIFVGRD---------- 66
A+G G + KVI+ N+ ++ S K + + + N V +I ++
Sbjct: 149 AQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIEESKAVKDNKVSEILENKEPVNGIIKKIT 208
Query: 67 -YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YG F+ L DGL V+ +E+S+ + + NEGDEV V V+ D+ K ++L
Sbjct: 209 SYGMFVDLGGIDGL------VNYNEISYKGPVNPANYYNEGDEVSVVVLSYDKAKQHLSL 262
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179
SIK +P E +D + D+ +++ SN + LG E LL
Sbjct: 263 SIKAALSNPWEEI------KDELEVGDTITVTVSNFESYGAFVDLGNDIEGLLH 310
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 27/157 (17%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG- 64
EP I K G + VK+I+ ++E + + S K D+ ++ + DI G
Sbjct: 403 EPNAKCKTIFK--KGDEVEVKIIKIDKEKENISLSVKEIADSPAKRFQDTYKIGDIVKGT 460
Query: 65 ----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
+D+G FI L +L GL+ + DI++ GDEV ++ ID +K
Sbjct: 461 VKDTKDFGIFIKLE-----NNLDGLIRNEDFGPLNPDDIKN----GDEVEAVIVNIDTKK 511
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+R+ LS+K+LE+ E L+ V +D SSM+
Sbjct: 512 NRVRLSVKRLEQQQEREVLKSV--------NDDSSMT 540
>gi|403515139|ref|YP_006655959.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
gi|403080577|gb|AFR22155.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
Length = 403
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKVI + + ++ S K + + + ++ ++ D+F G ++GAF+ +
Sbjct: 243 AGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLHEGDVFEGEVKSLTNFGAFVEV 302
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 --ADGI---QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|392547449|ref|ZP_10294586.1| 30S ribosomal protein S1 [Pseudoalteromonas rubra ATCC 29570]
Length = 555
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDKEKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLQNKGDQVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEEAVRE-YKKGDEISAIVLQVDPER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + G+++ + + T+E + G+
Sbjct: 427 ERISLGVKQIEADPFNNYLDA--NKKGAIVKGKVTDVDAKGATVELIEGV 474
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDKEKTRVSLGLKQLGEDPWAAIAGRYPEGAKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
G + V++++ + I+D +++ GDE+ K + +DR+ I+LS+K +
Sbjct: 476 GYIRVADIAQERIEDATSVVSAGDEIEAKFVGVDRKNRTISLSVKAI 522
>gi|407718428|ref|YP_006795833.1| 30S ribosomal protein S1 [Leuconostoc carnosum JB16]
gi|407242184|gb|AFT81834.1| 30S ribosomal protein S1 [Leuconostoc carnosum JB16]
Length = 396
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 20/157 (12%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAFIHL 73
I +VI+ + +L+ S K + S S++ V D+ G D+GAF+ L
Sbjct: 158 IKAQVIEIDPANARLILSRKAVAAQERSAHLAEVFSKLTVGDVVEGTVARLTDFGAFVDL 217
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL VHVSE+S D +++ D+L++G++V VK++ +D EK RI+LSIK +
Sbjct: 218 GGVDGL------VHVSEISHDRVKNPADVLSKGEKVNVKILALDTEKGRISLSIKATQPG 271
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P + E++ G+V+ + +E LPG+
Sbjct: 272 PWDKAAEEIAA--GAVLEGTVKRVKDFGAFVEVLPGI 306
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VK++ + E ++ S K W+K + + + G +D+GAF+ +
Sbjct: 244 GEKVNVKILALDTEKGRISLSIKATQPGPWDKAAEEIAAGAVLEGTVKRVKDFGAFVEV- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+++VKV+ I + RI+LS+K LEE P
Sbjct: 303 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKIQVKVLDIKPAEERISLSMKALEEKP 358
>gi|399520040|ref|ZP_10760826.1| 30S ribosomal protein S1 [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112040|emb|CCH37385.1| 30S ribosomal protein S1 [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 560
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPESTRVVARVTNLT 288
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV V + DYG F L
Sbjct: 238 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRV-VARVTNLTDYGCFAEL 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 297 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGIKQCK 350
Query: 132 EDP 134
+P
Sbjct: 351 TNP 353
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I +DR+ I+LS+K
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISVDRKSRVISLSVK 520
>gi|437391503|ref|ZP_20751140.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435199610|gb|ELN83675.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
Length = 306
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 64 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSL 117
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 118 GLKQLGEDP 126
>gi|421766691|ref|ZP_16203460.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
gi|407624717|gb|EKF51450.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
Length = 407
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VK+++ +EE +L S K W + + V G D+GAF+ L
Sbjct: 241 GDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVEL- 299
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVHVS++SW+ +++ +D+L G V VKV+ + E+ RI+LSIK LEE P
Sbjct: 300 FP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKALEEAP 355
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 20/165 (12%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR----- 65
K G I K+I+ N + + S + V + +++N DI G
Sbjct: 147 TKKFVGQEIEAKIIEINASENRFILSRRAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVT 206
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L DGL VHVSE+S + ++ D++ GD+V VK++K+D E R++L
Sbjct: 207 NFGAFVDLGGIDGL------VHVSELSHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSL 260
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
S+K + P E +E+ P GS + + + +E PG+
Sbjct: 261 SLKATQAGP-WEQVEEKAPV-GSTVEGTVKRLTDFGAFVELFPGV 303
>gi|420138995|ref|ZP_14646865.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CIG1]
gi|403248252|gb|EJY61838.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CIG1]
Length = 559
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 288
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V+V+ +EE +++ K W +SS+ N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 LRKQE 538
>gi|392308619|ref|ZP_10271153.1| 30S ribosomal protein S1 [Pseudoalteromonas citrea NCIMB 1889]
Length = 555
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDKEKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLKQCIANPWQEFARLQNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEEAVRE-YKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + + G+++ + + T+E + G+
Sbjct: 428 RISLGVKQIEADPFNNYLD--VNKKGAIVKGKVTEVDAKGATVELIEGV 474
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDKEKTRVSLGLKQLGEDPWAAIAGRYPEGAKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLETLE 140
G + V++++ + I+D +++ GDE+ K + +DR+ I+LS+K + EE +LE L+
Sbjct: 476 GYIRVADIAQERIEDATTVVSAGDEIEAKYVGVDRKNRTISLSVKAMFEAEEKEVLEKLK 535
Query: 141 KVIP 144
K P
Sbjct: 536 KEEP 539
>gi|269102376|ref|ZP_06155073.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268162274|gb|EEZ40770.1| SSU ribosomal protein S1p [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 556
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+EEDP + + G++++ + + + T+E G+
Sbjct: 427 ERISLGIKQIEEDPFNGFV--AATKKGALVNGTVTAVDAKGATVELAEGV 474
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|261855929|ref|YP_003263212.1| 30S ribosomal protein S1 [Halothiobacillus neapolitanus c2]
gi|261836398|gb|ACX96165.1| ribosomal protein S1 [Halothiobacillus neapolitanus c2]
Length = 560
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-----VEDIFVGR-------DYG 68
L G + K+I+ +++ +V S + V +YS+ + +++ V R DYG
Sbjct: 150 LEGKDVEFKIIKLDQKRNNVVVSRRAVVEQEYSAERDALLDQLQEGMVLRGVVKNLTDYG 209
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +++N GDEV VKV+K DR+++R++L +K
Sbjct: 210 AFLDLGGIDGLLHIT------DMAWKRVKHPSEVVNIGDEVDVKVLKFDRDRNRVSLGMK 263
Query: 129 QLEEDP 134
Q+ EDP
Sbjct: 264 QMGEDP 269
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ +EE +++ K W+ +++ D G+ D+G FI L
Sbjct: 328 GDEVEVMILDIDEERRRISLGMKQCQANPWDAFAASHQKGDKVSGQIKSITDFGVFIGL- 386
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GL+H+S++SW+ + +R +G+E+ VI ID E+ RI+L +KQLE
Sbjct: 387 --DG--GIDGLIHLSDLSWNEAGEEAVRQ-FKKGEEIEAVVIAIDPERERISLGLKQLES 441
Query: 133 DPL 135
DP+
Sbjct: 442 DPI 444
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + ++ K + W+ + R + G+ DYG F+ +
Sbjct: 241 GDEVDVKVLKFDRDRNRVSLGMKQMGEDPWSDLARRFPISSRMFGKVTNLTDYGCFVEID 300
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + + +++ GDEV V ++ ID E+ RI+L +KQ + +
Sbjct: 301 -----NGVEGLVHVSEMDWTNKNVNPGKVVSVGDEVEVMILDIDEERRRISLGMKQCQAN 355
Query: 134 P 134
P
Sbjct: 356 P 356
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + S++S D I D R +L EGD V KV+ +DR+ ++LSI+ + E +E++
Sbjct: 479 GYLRASDISRDRIDDARTVLKEGDAVEAKVMGVDRKNRMVSLSIRAKDSQEESEAMEEL- 537
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179
SS + SN P LG + +E L
Sbjct: 538 ---------SSRATVSN-------PTLGDLLKEQLN 557
>gi|219114931|ref|XP_002178261.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409996|gb|EEC49926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 284
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G+ + +K ++ N+E KLV S + AV + + ++ D+ G + YGAF+ +
Sbjct: 151 LIGNNLQLKFLEVNQETNKLVVSNRKAVVEQQMADLSRGDLVAGMVKALKPYGAFVEVG- 209
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+S++S+D I D+ +L G +V+ +I D+ RI LS K LE +P
Sbjct: 210 -----GMSGLLHISQISYDRIDDLEKVLQPGMQVKCMIIDHDKVNGRIALSTKTLEPEP 263
>gi|126695675|ref|YP_001090561.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9301]
gi|126542718|gb|ABO16960.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9301]
Length = 363
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 13/163 (7%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S +I L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 200 SARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGNVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP--LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
K LE +P +L +KV + + + M ++ IE +P
Sbjct: 314 KALEPEPGDMLTDPQKVFSKAEEMAAKYKQMLFEQTDDIEEIP 356
>gi|15598358|ref|NP_251852.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
gi|116051151|ref|YP_790018.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
gi|152988074|ref|YP_001347348.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PA7]
gi|218890646|ref|YP_002439510.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
gi|296388354|ref|ZP_06877829.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAb1]
gi|313108474|ref|ZP_07794478.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
gi|355641007|ref|ZP_09051994.1| 30S ribosomal protein S1 [Pseudomonas sp. 2_1_26]
gi|386057876|ref|YP_005974398.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa M18]
gi|386067180|ref|YP_005982484.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCGM2.S1]
gi|392983113|ref|YP_006481700.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa DK2]
gi|416865812|ref|ZP_11915822.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 138244]
gi|416884117|ref|ZP_11922257.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 152504]
gi|418585264|ref|ZP_13149318.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P1]
gi|418591686|ref|ZP_13155579.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P2]
gi|419752515|ref|ZP_14278922.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PADK2_CF510]
gi|421152923|ref|ZP_15612491.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 14886]
gi|421166698|ref|ZP_15624932.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 700888]
gi|421173646|ref|ZP_15631385.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CI27]
gi|421179684|ref|ZP_15637263.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa E2]
gi|421517692|ref|ZP_15964366.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO579]
gi|424942532|ref|ZP_18358295.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCMG1179]
gi|451987907|ref|ZP_21936058.1| SSU ribosomal protein S1p [Pseudomonas aeruginosa 18A]
gi|81540491|sp|Q9HZ71.1|RS1_PSEAE RecName: Full=30S ribosomal protein S1
gi|9949278|gb|AAG06550.1|AE004740_3 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO1]
gi|115586372|gb|ABJ12387.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa UCBPP-PA14]
gi|150963232|gb|ABR85257.1| ribosomal protein S1 [Pseudomonas aeruginosa PA7]
gi|218770869|emb|CAW26634.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa LESB58]
gi|310880980|gb|EFQ39574.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 39016]
gi|334834249|gb|EGM13230.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 138244]
gi|334834315|gb|EGM13289.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa 152504]
gi|346058978|dbj|GAA18861.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCMG1179]
gi|347304182|gb|AEO74296.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa M18]
gi|348035739|dbj|BAK91099.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa NCGM2.S1]
gi|354831033|gb|EHF15062.1| 30S ribosomal protein S1 [Pseudomonas sp. 2_1_26]
gi|375044684|gb|EHS37278.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P1]
gi|375049496|gb|EHS41990.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa MPAO1/P2]
gi|384401055|gb|EIE47411.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PADK2_CF510]
gi|392318618|gb|AFM63998.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa DK2]
gi|404347174|gb|EJZ73523.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PAO579]
gi|404524601|gb|EKA34928.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 14886]
gi|404535463|gb|EKA45155.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa CI27]
gi|404537280|gb|EKA46885.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa ATCC 700888]
gi|404546695|gb|EKA55737.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa E2]
gi|451754454|emb|CCQ88581.1| SSU ribosomal protein S1p [Pseudomonas aeruginosa 18A]
gi|453043077|gb|EME90811.1| 30S ribosomal protein S1 [Pseudomonas aeruginosa PA21_ST175]
Length = 559
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 288
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V+V+ +EE +++ K W +SS+ N D G
Sbjct: 314 KNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERER 428
Query: 123 ITLSIKQLEEDPL 135
I+L IKQLE+DP
Sbjct: 429 ISLGIKQLEDDPF 441
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 LRKQE 538
>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
Length = 402
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKVI + + ++ S K + + + ++ ++ D+F G ++GAF+ +
Sbjct: 243 AGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLSEGDVFEGEVKSLTNFGAFVEV 302
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 --ADGI---QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|146282681|ref|YP_001172834.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
gi|145570886|gb|ABP79992.1| 30S ribosomal protein S1 [Pseudomonas stutzeri A1501]
Length = 582
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 226 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 279
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 280 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 310
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 335 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIK 394
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 395 SITDFGIFIGL---DG--GIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVILSVDPERE 449
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 450 RISLGIKQLEDDPF 463
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 311 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 364
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 365 SLGIKQCKSNP 375
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 500 LKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 542
>gi|339494294|ref|YP_004714587.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|386020965|ref|YP_005938989.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 4166]
gi|327480937|gb|AEA84247.1| 30S ribosomal protein S1 [Pseudomonas stutzeri DSM 4166]
gi|338801666|gb|AEJ05498.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 560
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 288
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|194477089|ref|YP_002049268.1| 30S ribosomal protein S1 [Paulinella chromatophora]
gi|171192096|gb|ACB43058.1| 30S ribosomal protein S1 [Paulinella chromatophora]
Length = 330
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L + +K ++ +EE +LV S + A+ + +R+ V ++ +G + YGAFI +
Sbjct: 176 LVSDFLPLKFLEVDEERNRLVLSHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDI-- 233
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S + I+ +LN D+++V +I +D E+ RI+LS K LE +P
Sbjct: 234 ----GGVSGLLHISEISHEHIETPHTVLNVNDQMKVMIIDLDAERGRISLSTKALEPEP 288
>gi|347521866|ref|YP_004779437.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|385833250|ref|YP_005871025.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|420143919|ref|ZP_14651407.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
gi|343180434|dbj|BAK58773.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|343182403|dbj|BAK60741.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|391855371|gb|EIT65920.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
Length = 407
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VK+++ +EE +L S K W + + V G D+GAF+ L
Sbjct: 241 GDKVEVKILKLDEEAGRLSLSLKATQAGPWEQVEEKAPVGSTVEGTVKRLTDFGAFVEL- 299
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVHVS++SW+ +++ +D+L G V VKV+ + E+ RI+LSIK LEE P
Sbjct: 300 FP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKPEEERISLSIKALEEAP 355
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 20/165 (12%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR----- 65
K G I K+I+ N + + S + V + +++N DI G
Sbjct: 147 TKKFVGQEIEAKIIEINASENRFILSRRAVVEAETIEMRKEAFAQLNEGDIVEGTVSRVT 206
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L DGL VHVSE+S + ++ D++ GD+V VK++K+D E R++L
Sbjct: 207 NFGAFVDLGGIDGL------VHVSELSHNRVKRPSDVVKPGDKVEVKILKLDEEAGRLSL 260
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
S+K + P E +E+ P GS + + + +E PG+
Sbjct: 261 SLKATQAGP-WEQVEEKAPV-GSTVEGTVKRLTDFGAFVELFPGV 303
>gi|146329586|ref|YP_001209043.1| 30S ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
gi|146233056|gb|ABQ14034.1| ribosomal protein S1 [Dichelobacter nodosus VCS1703A]
Length = 558
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 18/131 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-----VNVEDIFVGR-------DYGAF 70
G I K+I+ +++ +V S + + ++Y + N+++ V + DYGAF
Sbjct: 150 GKEIEFKIIKLDQKRNNIVVSRRAVIEHEYKAEREEVLQNLQEGDVVKAVVKNLTDYGAF 209
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL H+T +++W I+ +++N GDEV VKV+K DRE++R++L +KQL
Sbjct: 210 LDLGGVDGLLHIT------DMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLGLKQL 263
Query: 131 EEDPLLETLEK 141
EDP + E+
Sbjct: 264 GEDPWGDIAER 274
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E ++ K + W + R V GR DYGAF+ +
Sbjct: 239 GDEVEVKVLKFDRERARVSLGLKQLGEDPWGDIAERYPVNTQASGRVTNIADYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+ W + + R + G EV V ++ +D E+ RI+L +KQ + +
Sbjct: 299 --DGV---EGLVHVSEMDWTNKNVNPRKFVAVGQEVEVMILDVDSERRRISLGMKQCQSN 353
Query: 134 PLLE 137
P E
Sbjct: 354 PWQE 357
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + V ++ + E +++ K W ++ N + G+ D+G FI L
Sbjct: 325 VGQEVEVMILDVDSERRRISLGMKQCQSNPWQEFEKNYNKGERIKGQIKSITDFGIFIGL 384
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
P G+ GLVH+S++SWD + +R +G EV ++ I+ ++ RI+L IKQL
Sbjct: 385 --PGGI---DGLVHLSDLSWDENNEEAVR-AYQKGQEVETIILGIEADRERISLGIKQLS 438
Query: 132 ED 133
+D
Sbjct: 439 QD 440
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ +E + + ++D+ + GDE+ KV+ IDR+ I LSI+ K
Sbjct: 475 VNGVLRAAEAAIERVEDLTKLFAVGDEIEAKVLNIDRKHKSIALSIRA-----------K 523
Query: 142 VIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEEL 177
+ ++ +VI D + + S + LG IF+EL
Sbjct: 524 DVAEEKAVIQDYTRKDNQASTS------LGDIFKEL 553
>gi|114330421|ref|YP_746643.1| 30S ribosomal protein S1 [Nitrosomonas eutropha C91]
gi|114307435|gb|ABI58678.1| SSU ribosomal protein S1P [Nitrosomonas eutropha C91]
Length = 570
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ +++N GDEV K++K D+EK+R++L
Sbjct: 213 DYGAFVDLGGIDGLLHITDL------AWRRVKHPTEVINVGDEVSAKILKFDQEKNRVSL 266
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ + ++M+
Sbjct: 267 GLKQLTEDPWI-GLSRRYPQGTRMFGKVTNMT 297
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 10/73 (13%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE---GDEVRVKVIKIDREKSR 122
D+G FI L P ++ GLVH+S++SW IQ ++E GDEV V+ ID EK R
Sbjct: 385 DFGLFIGL--PG---NIDGLVHLSDLSW--IQTGEKAISEFRKGDEVEAVVLSIDVEKER 437
Query: 123 ITLSIKQLEEDPL 135
I+L IKQLE DP
Sbjct: 438 ISLGIKQLEGDPF 450
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G +S K+++ ++E ++ K W S R G+ DYGAF+ +
Sbjct: 247 GDEVSAKILKFDQEKNRVSLGLKQLTEDPWIGLSRRYPQGTRMFGKVTNMTDYGAFVEIE 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ I+ GDEV V +++ID ++ RI+L +KQ +
Sbjct: 307 -----QGIEGLVHVSEMDW-TNKNVYPSKIVQLGDEVEVMILEIDEDRRRISLGMKQCKP 360
Query: 133 DP 134
+P
Sbjct: 361 NP 362
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETL 139
G + SE S D I+DIR +NEGDE+ +I IDR+ I+LS+K Q EED + +L
Sbjct: 485 GYLRASEFSRDKIEDIRTRVNEGDELEAAIINIDRKSRSISLSVKARIQEEEDKAIRSL 543
>gi|421159453|ref|ZP_15618588.1| 30S ribosomal protein S1, partial [Pseudomonas aeruginosa ATCC
25324]
gi|404547165|gb|EKA56179.1| 30S ribosomal protein S1, partial [Pseudomonas aeruginosa ATCC
25324]
Length = 272
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
>gi|374308458|ref|YP_005054889.1| hypothetical protein [Filifactor alocis ATCC 35896]
gi|320120527|gb|ADW16175.1| hypothetical protein HMPREF0389_01731 [Filifactor alocis ATCC
35896]
Length = 394
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 25 IISVKVIQANEE-MKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLT 83
I+S KVI A EE K+ F + V N Y+ V DI ++YG F+ L +T
Sbjct: 164 ILSRKVIIAREEEAKRDEFVKTLEVGNVYTGVVR--DI---KNYGMFVDLG------AMT 212
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
GLVH+SE+SW+ I ++ DEV+VKV+ D EK R++LSIK L EDP ET K
Sbjct: 213 GLVHISELSWNRRDKIEELYKVDDEVQVKVVDFDPEKGRLSLSIKALSEDP-FETFRK 269
Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPD 77
+ VKV+ + E +L S K + + + V+DI ++YG F+ L
Sbjct: 238 VQVKVVDFDPEKGRLSLSIKALSEDPFETFRKNAKVDDIIECTVKNIKEYGVFVKLN--- 294
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
+ G +H+S +S +++ +++++GD + ++I I+ E ++ L++
Sbjct: 295 --ETVDGFIHISNLSSSYVKNPNEVVSQGDVITARIISINEETQKVELTM 342
>gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group]
Length = 382
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +EE +LV S + A+ + + ++ + + +G + YGAFI +
Sbjct: 203 LPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDI------G 255
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 256 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 309
>gi|162382312|ref|YP_662036.2| 30S ribosomal protein S1 [Pseudoalteromonas atlantica T6c]
Length = 557
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQ+ DP E E+
Sbjct: 258 GMKQMGNDPWQEIAER 273
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + D G+
Sbjct: 313 NKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKPNPWEEFAKAQSKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYKKGDEISAVVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETL 139
RI+L +KQ+EEDP + L
Sbjct: 428 RISLGVKQIEEDPFNQYL 445
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I+VKV++ ++E ++ K + W + + R G DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIAERYPEGSKLSGAVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKP 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWEE 356
>gi|226943704|ref|YP_002798777.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
gi|226718631|gb|ACO77802.1| 30S ribosomal protein S1 [Azotobacter vinelandii DJ]
Length = 559
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 288
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +SSR N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSSRYNKGDRITGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNEQGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQL +DP
Sbjct: 428 RISLGVKQLADDPF 441
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ ++ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK + D + +++
Sbjct: 474 IEAVLKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIKAKDVDDEKDAIKE 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 LRKQE 538
>gi|449459770|ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
gi|449517357|ref|XP_004165712.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
Length = 413
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 12/129 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----R 65
Q S A+ L + +K ++ +EE +LV S + A+ + +++ + + G +
Sbjct: 217 QISTKSNAEELLSKELPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGIGSVVTGTVQSLK 275
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI + + GL+HVS++S D I DI +L GD ++V ++ DRE+ R++L
Sbjct: 276 PYGAFIDI------GGINGLLHVSQISHDRISDIATVLQPGDSLKVMILSHDRERGRVSL 329
Query: 126 SIKQLEEDP 134
S K+LE P
Sbjct: 330 STKKLEPTP 338
>gi|414083663|ref|YP_006992371.1| 30S ribosomal protein S1 [Carnobacterium maltaromaticum LMA28]
gi|412997247|emb|CCO11056.1| 30S ribosomal protein S1 homolog [Carnobacterium maltaromaticum
LMA28]
Length = 402
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ NEE ++ S KD W R V G +GAF+ +
Sbjct: 247 GEEVQVKILSINEETGRISLSIKDTQPGPWENIEERAAVGSTLSGIVKRLTSFGAFVEV- 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+P + GLVH+S++S + I ++L+EGDE++VKV++++ R++LSIK LEE P
Sbjct: 306 YPG----VEGLVHISQISHNHIATPHEVLHEGDEIKVKVLEVNPTDQRLSLSIKALEEKP 361
Query: 135 LLETLEK 141
E EK
Sbjct: 362 ASEKSEK 368
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K +V +EK+ + +++ D G ++GAFI L DGL VH+S++S
Sbjct: 180 KAVVEAEKEVAKKEIMTKLVEGDTVTGTVARLTNFGAFIDLGGVDGL------VHISQIS 233
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ ++ D+L G+EV+VK++ I+ E RI+LSIK + P E+ GS +S
Sbjct: 234 YNHVKAPGDVLTVGEEVQVKILSINEETGRISLSIKDTQPGPWENIEERAAV--GSTLSG 291
Query: 153 SSSMSSSNSNTIEPLPGL 170
+S +E PG+
Sbjct: 292 IVKRLTSFGAFVEVYPGV 309
>gi|409426083|ref|ZP_11260649.1| 30S ribosomal protein S1 [Pseudomonas sp. HYS]
Length = 559
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPESTRVMARVTNLT 288
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 426
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 427 ERISLGIKQLESDPFSE 443
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG+E+ K+I +DR+ I LSIK EE +++L++
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSLKEA 537
Query: 143 IPQDGS 148
P + +
Sbjct: 538 APSEAA 543
>gi|339477878|ref|YP_004706698.1| 30S ribosomal protein S1 [Candidatus Moranella endobia PCIT]
gi|338172429|gb|AEI74830.1| 30S ribosomal protein S1 [Candidatus Moranella endobia PCIT]
Length = 556
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V+ +EE +++ K W K++ D G+
Sbjct: 313 NKNIHPSKVVNVGKMVEVIVLDVDEERRRISLGMKQCKGNPWQKFAETYKKGDRVEGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH S+++W++I + +R+ +GDE+ V+++D +
Sbjct: 373 SITDFGVFIGL---DG--GIDGLVHSSDIAWNVIGEEAVRE-YKKGDEITAVVLQVDAGR 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQL EDPL L ++ + G++I+ + + S T+E + G+
Sbjct: 427 ERISLGIKQLVEDPLNHYL--LLHKKGTIINGTVTAVDSKGATVELVGGI 474
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W ++ +I++ G+E+ VKV+K DRE++R++L
Sbjct: 204 DYGAFIDLGGVDGLLHIT------DMAWKRVKHPSEIVHIGEEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + + K P+ +I ++++
Sbjct: 258 GLKQLSEDPWI-AIAKRYPEGIRLIGKVTNLT 288
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 30/142 (21%)
Query: 7 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVE 59
K P + +H G I+VKV++ + E ++ K A+ +Y +
Sbjct: 228 VKHPSEIVH------IGEEITVKVLKFDRERTRVSLGLKQLSEDPWIAIAKRYPEGIR-- 279
Query: 60 DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVK 112
+G+ +YG F+ + + + GLVHVSE+ W ++I ++N G V V
Sbjct: 280 --LIGKVTNLTEYGCFVEI-----VEGVEGLVHVSEMDWTN-KNIHPSKVVNVGKMVEVI 331
Query: 113 VIKIDREKSRITLSIKQLEEDP 134
V+ +D E+ RI+L +KQ + +P
Sbjct: 332 VLDVDEERRRISLGMKQCKGNP 353
>gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group]
Length = 402
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 223 LPLKFVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI------G 275
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 276 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 329
>gi|104780673|ref|YP_607171.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
gi|95109660|emb|CAK14361.1| 30S ribosomal protein S1 [Pseudomonas entomophila L48]
Length = 558
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPESTRVMARVTNLT 288
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRR-FKKGDELETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 427 ERISLGIKQLEDDPF 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|107102692|ref|ZP_01366610.1| hypothetical protein PaerPA_01003758 [Pseudomonas aeruginosa PACS2]
Length = 542
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 187 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 240
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 241 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 271
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V+V+ +EE +++ K W +SS+ N D G
Sbjct: 297 KNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIKS 356
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 357 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERER 411
Query: 123 ITLSIKQLEEDPL 135
I+L IKQLE+DP
Sbjct: 412 ISLGIKQLEDDPF 424
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI
Sbjct: 272 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRI 325
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 326 SLGIKQCKSNP 336
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 457 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 516
Query: 142 VIPQD 146
+ Q+
Sbjct: 517 LRKQE 521
>gi|289810200|ref|ZP_06540829.1| 30S ribosomal protein S1 [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 233
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 19/149 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 7 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 66
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 67 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLK 120
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMS 157
QL EDP + + K P+ + ++++
Sbjct: 121 QLGEDPWV-AIAKRYPEGTKLTGRVTNLT 148
>gi|284928895|ref|YP_003421417.1| 30S ribosomal protein S1P [cyanobacterium UCYN-A]
gi|284809354|gb|ADB95059.1| SSU ribosomal protein S1P [cyanobacterium UCYN-A]
Length = 346
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 265 KQLEPEP 271
>gi|15616919|ref|NP_240132.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681673|ref|YP_002468059.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682228|ref|YP_002468612.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471362|ref|ZP_05635361.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226112|ref|YP_005617275.1| 30S ribosomal protein S1 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384226630|ref|YP_005618381.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|414562666|ref|YP_005617857.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|11387054|sp|P57395.1|RS1_BUCAI RecName: Full=30S ribosomal protein S1
gi|25294429|pir||B84966 30S ribosomal protein S1 [imported] - Buchnera sp. (strain APS)
gi|10038983|dbj|BAB13018.1| 30S ribosomal protein S1 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621961|gb|ACL30117.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624516|gb|ACL30671.1| 30S ribosomal protein S1 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086619|gb|ADP66700.1| 30S ribosomal protein S1 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087202|gb|ADP67282.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087727|gb|ADP67806.1| 30S ribosomal protein S1 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 558
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + ++V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ +K++K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQD 146
QL EDP + + K P++
Sbjct: 261 QLGEDPWI-AISKRYPEE 277
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRIT 124
D+G FI L + GLVH+S++SW + + + + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERIS 430
Query: 125 LSIKQLEEDPL 135
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 35.4 bits (80), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I++K+++ + E ++ K + W S R E GR DYG F+ +
Sbjct: 238 GDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ D V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWKE 356
>gi|421619223|ref|ZP_16060185.1| 30S ribosomal protein S1 [Pseudomonas stutzeri KOS6]
gi|409778774|gb|EKN58458.1| 30S ribosomal protein S1 [Pseudomonas stutzeri KOS6]
Length = 560
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 314 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNEQGEEAVRRFKKGDELDTVILSVDPERER 428
Query: 123 ITLSIKQLEEDPL 135
I+L IKQLE+DP
Sbjct: 429 ISLGIKQLEDDPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ +Y V+ DYG F L
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|392421531|ref|YP_006458135.1| 30S ribosomal protein S1 [Pseudomonas stutzeri CCUG 29243]
gi|431927123|ref|YP_007240157.1| 30S ribosomal protein S1P [Pseudomonas stutzeri RCH2]
gi|452749402|ref|ZP_21949166.1| 30S ribosomal protein S1 [Pseudomonas stutzeri NF13]
gi|390983719|gb|AFM33712.1| 30S ribosomal protein S1 [Pseudomonas stutzeri CCUG 29243]
gi|431825410|gb|AGA86527.1| SSU ribosomal protein S1P [Pseudomonas stutzeri RCH2]
gi|452006737|gb|EMD99005.1| 30S ribosomal protein S1 [Pseudomonas stutzeri NF13]
Length = 560
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ +Y V+ DYG F L
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|227204349|dbj|BAH57026.1| AT5G30510 [Arabidopsis thaliana]
Length = 378
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 232 IPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDIG------ 284
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 285 GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
>gi|406962419|gb|EKD88788.1| hypothetical protein ACD_34C00343G0001, partial [uncultured
bacterium]
Length = 205
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 11/79 (13%)
Query: 61 IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
I VGR ++G F+++ DGL VH+SE+SWD I ++L G EV+VKVI
Sbjct: 10 IVVGRVTSLAEFGVFVNVNGADGL------VHLSEISWDRITHPNEVLKVGQEVKVKVIS 63
Query: 116 IDREKSRITLSIKQLEEDP 134
IDREK RI LSI+QL DP
Sbjct: 64 IDREKKRIGLSIRQLLSDP 82
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 17/137 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + E K++ S + + W++ ++ V + G +GAF R
Sbjct: 54 GQEVKVKVISIDREKKRIGLSIRQLLSDPWDQKAAEFQVGQLIEGTITRLTKFGAF--AR 111
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE-- 132
D + GL+H+SE+S I+ +++L EGD +++IKID + RI LS+++++
Sbjct: 112 LSD---DIEGLIHISEISEKRIEHPKEVLKEGDSCTLRIIKIDNDNHRIGLSLRRVDSMA 168
Query: 133 --DPLLETLEKVIPQDG 147
D E+LE ++ DG
Sbjct: 169 YADMDWESLEGILTTDG 185
>gi|384227170|ref|YP_005618920.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086046|gb|ADP66128.1| 30S ribosomal protein S1 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
Length = 558
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + ++V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ +K++K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQD 146
QL EDP + + K P++
Sbjct: 261 QLGEDPWI-AISKRYPEE 277
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRIT 124
D+G FI L + GLVH+S++SW + + + + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERIS 430
Query: 125 LSIKQLEEDPL 135
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I++K+++ + E ++ K + W S R E GR DYG F+ +
Sbjct: 238 GDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ D V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWKE 356
>gi|168014820|ref|XP_001759949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688699|gb|EDQ75074.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 389
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 11/114 (9%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE +LV S + A + + S + + VG + YGAFI +
Sbjct: 237 IPLKFLEVDEERTRLVLSNRKATFAESQSAFGIGSVVVGTVQTVKPYGAFIDIG------ 290
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+S++S D + + +L+ GD+++V V+ D+++ RI+LS K+LE P
Sbjct: 291 GVSGLLHISQISHDRLTSVETVLSPGDKLKVMVLSQDKDRGRISLSTKKLEPTP 344
>gi|443327874|ref|ZP_21056481.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442792485|gb|ELS01965.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 364
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + VG + Y
Sbjct: 152 SAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVVGSVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 212 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLST 265
Query: 128 KQLE 131
KQLE
Sbjct: 266 KQLE 269
>gi|418293368|ref|ZP_12905277.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064760|gb|EHY77503.1| 30S ribosomal protein S1 [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 560
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEPGEEAVRRFKKGDELDTVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ +Y V+ DYG F L
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVQARVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDEV K+I IDR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEVEAKIISIDRKSRVISLSIK 520
>gi|254796773|ref|YP_003081609.1| ribosomal protein S1 [Neorickettsia risticii str. Illinois]
gi|254590014|gb|ACT69376.1| ribosomal protein S1 [Neorickettsia risticii str. Illinois]
Length = 553
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYG 68
L G + ++++ + + K+ S K +A ++Y S + DI GR YG
Sbjct: 171 LVGVKLKFRILKMDPKTGKIFVSRKKALGAVHEAARSEYISTIKEGDIIDGRVKSIASYG 230
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+ + D + + GL++V+++SW + I + G EVRVKVI +D EK RI+L +K
Sbjct: 231 VFVQIHESDKVGVVDGLLYVNDISWARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVK 290
Query: 129 QLEEDPLLETLEKVIPQD 146
QL E+P + +K P +
Sbjct: 291 QLTENPWKDISKKYTPGN 308
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI + E ++ K W S + +++ G DYG F+ R
Sbjct: 268 GQEVRVKVIAVDPEKGRISLGVKQLTENPWKDISKKYTPGNVYPGVVTSVEDYGIFV--R 325
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G+ GLVH E+SW + + +V V ++ +D E +I LS+KQ E+P
Sbjct: 326 LEEGV---EGLVHSGEISW---TREKPLFLPNSKVNVMLLSVDEEGHKIALSVKQCSENP 379
Query: 135 LLETLE 140
+ L+
Sbjct: 380 WKKFLD 385
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIH 72
L S ++V ++ +EE K+ S K W K+ + + + D G +
Sbjct: 349 LPNSKVNVMLLSVDEEGHKIALSVKQCSENPWKKFLDAYGLGVVVKCKVVEITDSGIVLT 408
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE---GDEVRVKVIKIDREKSRITLSIKQ 129
L G ++ G V ++ +SW Q+ R L GDEV K++ ++ E+ R+ +IK
Sbjct: 409 L-LDSGYSYVRGYVRLANISWS--QNPRKELKRFTIGDEVDAKLVHVNPERGRVMFNIKY 465
Query: 130 LEEDPLLETLEKVIPQDGSVIS 151
+E DP E + KV +G +I+
Sbjct: 466 VEYDPFEEFISKV--NEGDIIN 485
>gi|384227744|ref|YP_005619489.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538684|gb|AEO08661.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 558
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + ++V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ +K++K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQD 146
QL EDP + + K P++
Sbjct: 261 QLGEDPWI-AISKRYPEE 277
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G FI L + GLVH+S++SW ++ + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWITPGEEAVKKYKKNDEISAVVLQVDAERERIS 430
Query: 125 LSIKQLEEDPL 135
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I++K+++ + E ++ K + W S R E GR DYG F+ +
Sbjct: 238 GDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ D V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVVVNDIVEVMVLDIDEERRRISLGLKQCKI 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWKE 356
>gi|319786987|ref|YP_004146462.1| 30S ribosomal protein S1 [Pseudoxanthomonas suwonensis 11-1]
gi|317465499|gb|ADV27231.1| ribosomal protein S1 [Pseudoxanthomonas suwonensis 11-1]
Length = 562
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELEVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 325 VGDEVEVMVLDVDEERRRISLGMKQVAANPWETFAAIHKKGDKVSGQIKSITDFGIFIGL 384
Query: 74 RFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQ+E+
Sbjct: 385 ---DG--GIDGLVHLSDISWNTTGEDVLRNFKKGDTLDAVVLAVDPERERISLGLKQMEQ 439
Query: 133 DPL 135
DP
Sbjct: 440 DPF 442
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 238 VGDELEVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEI 297
Query: 74 RFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+
Sbjct: 298 E-P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAA 352
Query: 133 DP 134
+P
Sbjct: 353 NP 354
>gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
Length = 402
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 18/128 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVW-------NKYSSRVNVEDIFVGR-----DYGAFIHL 73
+ +KVI+ N +L+ SE+ AV ++ SR+ D+ G D+GAF+ +
Sbjct: 189 LQLKVIEINRNRNRLILSERQAVQEARETKKDELLSRLKEGDVRTGTISSVCDFGAFVDI 248
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL VH+SE+SW ++ ++L+ GD+V+V ++ +D ++ RI LSIK+ + +
Sbjct: 249 GGADGL------VHLSEISWSRVKHPSEVLHPGDKVQVSILSVDHDRKRIALSIKRTQSE 302
Query: 134 PLLETLEK 141
P E+
Sbjct: 303 PWTRAGER 310
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 7 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV 63
K P + +H G + V ++ + + K++ S K W + R + I
Sbjct: 265 VKHPSEVLH------PGDKVQVSILSVDHDRKRIALSIKRTQSEPWTRAGERYQLGQIVE 318
Query: 64 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 118
G +GAF R DG+ GL+H+SE+ + IQ ++++ EGD ++ ++I+ID
Sbjct: 319 GTITQLASFGAFA--RIEDGI---EGLIHISEMGDERIQHPKEVIAEGDTIQARIIRIDP 373
Query: 119 EKSRITLSIKQLEEDP 134
+ R+ LS++ L +P
Sbjct: 374 ARKRMGLSLR-LNREP 388
>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 411
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 20/145 (13%)
Query: 9 EPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDI 61
E QK E+A+ + G +++KVI+ N +L+ SE+ A + R + D+
Sbjct: 180 EAQKQ-SEMAR-MVGQTLALKVIEINRNRNRLILSERQAAMDVREGRKGELLSALKEGDV 237
Query: 62 FVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
G D+GAF+ + DGL VH+SE+SW ++ +IL GD+V+V V+ I
Sbjct: 238 REGVVTSVCDFGAFVDIGGADGL------VHLSELSWSRVKHPSEILKPGDKVQVYVLSI 291
Query: 117 DREKSRITLSIKQLEEDPLLETLEK 141
D E+ RI LS+K+ + +P E+
Sbjct: 292 DNERKRIALSLKRTQHEPWATVGER 316
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V+ + E K++ S K W R ++ + G +GAF+ R
Sbjct: 281 GDKVQVYVLSIDNERKRIALSLKRTQHEPWATVGERYHIGQMVEGVVTQLAPFGAFV--R 338
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ GL+HVSE+ +Q RD+L EGD V+ ++I+ID + RI LS++Q +D
Sbjct: 339 IEDGV---EGLIHVSEMGDGRVQHPRDVLQEGDAVQARIIRIDPARKRIGLSMRQSSDDQ 395
Query: 135 L 135
+
Sbjct: 396 I 396
>gi|429335751|ref|ZP_19216371.1| 30S ribosomal protein S1 [Pseudomonas putida CSV86]
gi|428759641|gb|EKX81935.1| 30S ribosomal protein S1 [Pseudomonas putida CSV86]
Length = 558
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPEGTRVMARVTNLT 288
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 427 ERISLGIKQLEDDPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EGDE+ K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGDEIEAKIISVDRKSRNISLSIK 520
>gi|406580147|ref|ZP_11055365.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|406582367|ref|ZP_11057492.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|406584611|ref|ZP_11059636.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|406589505|ref|ZP_11063940.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410937808|ref|ZP_11369667.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
gi|404454526|gb|EKA01454.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|404458219|gb|EKA04666.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|404463841|gb|EKA09420.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|404470775|gb|EKA15370.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410733941|gb|EKQ75863.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
Length = 409
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 312
>gi|333900214|ref|YP_004474087.1| 30S ribosomal protein S1 [Pseudomonas fulva 12-X]
gi|333115479|gb|AEF21993.1| ribosomal protein S1 [Pseudomonas fulva 12-X]
Length = 559
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V++ ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPESTRVMARVTNLT 288
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKTNPWEDFSGQFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKTNP 353
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ + SE+S D ++D R++L EG+EV K+I +DR+ I+LS+
Sbjct: 465 GAIITL--ADGI---EATLKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVISLSV 519
Query: 128 K 128
K
Sbjct: 520 K 520
>gi|282856368|ref|ZP_06265647.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
gi|282585739|gb|EFB91028.1| 30S ribosomal protein S1 [Pyramidobacter piscolens W5455]
Length = 518
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR-----DYG 68
G V++++ ++ ++LV S + A K+ S VNV D+ G +G
Sbjct: 164 FEGEEFQVRLLEMDKRKRRLVLSRRSLLDEDLSAKREKFYSEVNVGDVLDGTVSSVTTFG 223
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+++ L GLVHVSEVSW R+ +GD V+VKVI ID+E ++I+LSI+
Sbjct: 224 LFVNV------GPLDGLVHVSEVSWQRSSKSRETYKKGDAVKVKVIGIDKENNKISLSIR 277
Query: 129 QLEEDPLLETLEK 141
Q + +P +E+
Sbjct: 278 QAQGNPWDTVMER 290
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI ++E K+ S + A W+ R + G D+GAF+ +
Sbjct: 255 GDAVKVKVIGIDKENNKISLSIRQAQGNPWDTVMERWQKDQQTKGVVTNVTDFGAFVEVE 314
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
P + GL+H+ ++SW I+ R++L++G EV V++ID EK R++L KQL DP
Sbjct: 315 -PG----IEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSLGYKQL-HDP 368
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + + GL+H+S++S ++ D+L EG EV +V++++ + RI L
Sbjct: 391 DFGAFVEIE-----KGVEGLIHISQLSTHRVEKPGDVLQEGQEVTARVLEVNPAERRIRL 445
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP 166
SI +E K P G ++S + +P
Sbjct: 446 SISAIEAGEKAAERGKNSPAQGEKAPRHEGLASRSERNSKP 486
>gi|431010092|ref|ZP_19489617.1| ribosomal protein S1 [Enterococcus faecium E1578]
gi|430560587|gb|ELA99883.1| ribosomal protein S1 [Enterococcus faecium E1578]
Length = 403
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 247 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 305
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 306 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 361
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
GLVHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 221 ------------DGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDT 268
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 269 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 306
>gi|262274461|ref|ZP_06052272.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
gi|262221024|gb|EEY72338.1| SSU ribosomal protein S1p [Grimontia hollisae CIP 101886]
Length = 556
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W ++ N D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQLFAEMQNKGDRVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +RD +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLQVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+EEDP L + G+++ + + T+E + G+
Sbjct: 427 ERISLGIKQMEEDPFNNYLAD--NKKGAIVKGKVTAVDAKGATVELIEGV 474
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + + ++ K + W ++R GR DYG F+ +
Sbjct: 238 GDEINVKVLKFDRDRTRVSLGLKQLGEDPWVAIANRYPEGHKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SE S D ++D +L GDEV K +DR+ I LS++ + EE + TL
Sbjct: 476 GYLRASEASRDRVEDATLVLAVGDEVEAKFTGVDRKNRVINLSVRAKDEAEEQEAMATLN 535
Query: 141 KVIPQD-GSVISDSSSMSSS 159
K G+ ++D+ + S
Sbjct: 536 KADEAAFGNAMADAFKAAKS 555
>gi|261207579|ref|ZP_05922264.1| ribosomal protein S1 [Enterococcus faecium TC 6]
gi|289565091|ref|ZP_06445544.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
gi|260077962|gb|EEW65668.1| ribosomal protein S1 [Enterococcus faecium TC 6]
gi|289163098|gb|EFD10945.1| rpsA, 30S ribosomal protein S1 [Enterococcus faecium D344SRF]
Length = 409
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 312
>gi|225432062|ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
gi|296083203|emb|CBI22839.3| unnamed protein product [Vitis vinifera]
Length = 410
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ VK ++ +EE +LV S + A+ + +++ + + G + YGAFI +
Sbjct: 228 LPVKFVEVDEEQSRLVLSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDIG------ 280
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 281 GINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 340
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 341 PKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 379
>gi|157827436|ref|YP_001496500.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
gi|157802740|gb|ABV79463.1| 30S ribosomal protein S1 [Rickettsia bellii OSU 85-389]
Length = 572
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ NEE K++ K W K V G+ DYG FI L+ D
Sbjct: 257 VKVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFIELK--D 314
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R L G EV V+++D EK R++LSIKQ +++PL+
Sbjct: 315 GL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLI 371
Query: 137 ETLE 140
+ E
Sbjct: 372 KFAE 375
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK + E RI+L
Sbjct: 220 DYGAFIDLGSVDGLLHLT------DISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISL 273
Query: 126 SIKQLEEDP 134
+KQL+ +P
Sbjct: 274 GMKQLDYNP 282
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L +L G++H +++W+ ++ +GDEV KV+ I+ EK +I+
Sbjct: 392 DFGIFVALS-----DNLDGMIHEGDITWEYNGNELLKTYKKGDEVECKVLTINIEKEQIS 446
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 447 LGIKQLTPNP 456
>gi|90406780|ref|ZP_01214972.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
gi|90312017|gb|EAS40110.1| 30S ribosomal protein S1 [Psychromonas sp. CNPT3]
Length = 555
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 203 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKYDRERTRVSL 256
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 257 GLKQLGEDP 265
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 24/156 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W ++SS + G+
Sbjct: 312 NKNIHPSKVVSLGDMAEVMVLDIDEERRRISLGLKQCKANPWEEFSSTHDKGQKVTGKIK 371
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-----IQDIRDILNEGDEVRVKVIKID 117
D+G FI L ++ GLVH+S++SWD+ +Q+ + +GDE+ V+++D
Sbjct: 372 SITDFGIFIGLE-----GNIDGLVHLSDISWDVEGDKAVQEYK----KGDEIEAVVLQVD 422
Query: 118 REKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDS 153
E+ RI+L IKQ+E DP L + + GS+++ +
Sbjct: 423 PERERISLGIKQIEADPFNNYLAE--NKKGSIVTGT 456
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R G+ DYG F+ +
Sbjct: 237 GDEITVKVLKYDRERTRVSLGLKQLGEDPWVAIAKRYPESTRLTGKVTNLTDYGCFVEIE 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V+ ID E+ RI+L +KQ +
Sbjct: 297 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDMAEVMVLDIDEERRRISLGLKQCKA 350
Query: 133 DP 134
+P
Sbjct: 351 NP 352
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S D ++D +L G+ V K + +DR+ I+LSIK +E E ++ +
Sbjct: 475 GYIRVADISRDRVEDASTVLKVGESVEAKFVGVDRKNRVISLSIKAKDEAEEKEAIDSLK 534
Query: 144 PQDGSVISDS 153
QD + + ++
Sbjct: 535 DQDEASMGNA 544
>gi|260559045|ref|ZP_05831231.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|293556738|ref|ZP_06675301.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|293563396|ref|ZP_06677845.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|293568054|ref|ZP_06679392.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|294614847|ref|ZP_06694742.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|294618678|ref|ZP_06698212.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|294621936|ref|ZP_06701084.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|314942007|ref|ZP_07848868.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|314991835|ref|ZP_07857293.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|314995876|ref|ZP_07860963.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|383328526|ref|YP_005354410.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|415894979|ref|ZP_11550475.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|424786294|ref|ZP_18213084.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|424938690|ref|ZP_18354462.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|424956864|ref|ZP_18371621.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|424973500|ref|ZP_18386777.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|424980623|ref|ZP_18393405.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|424983213|ref|ZP_18395813.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|424986625|ref|ZP_18399034.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|424989623|ref|ZP_18401883.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|424998474|ref|ZP_18410158.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|425001445|ref|ZP_18412960.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|425011585|ref|ZP_18422476.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|425013337|ref|ZP_18424073.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|425020476|ref|ZP_18430780.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|425022907|ref|ZP_18433060.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|425031841|ref|ZP_18436942.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|427395181|ref|ZP_18888103.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430820410|ref|ZP_19439042.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430821943|ref|ZP_19440524.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430825063|ref|ZP_19443274.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430830280|ref|ZP_19448338.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430836240|ref|ZP_19454223.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430844532|ref|ZP_19462430.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430846512|ref|ZP_19464371.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430850112|ref|ZP_19467878.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430852811|ref|ZP_19470542.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430854381|ref|ZP_19472094.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430861941|ref|ZP_19479293.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430864427|ref|ZP_19480349.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430870377|ref|ZP_19483232.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430958937|ref|ZP_19486801.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|431193736|ref|ZP_19500243.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|431259185|ref|ZP_19505362.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|431295479|ref|ZP_19507367.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|431368570|ref|ZP_19509384.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|431436377|ref|ZP_19513076.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|431503059|ref|ZP_19515295.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|431539188|ref|ZP_19517692.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|431626809|ref|ZP_19523048.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|431743456|ref|ZP_19532335.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|431748753|ref|ZP_19537508.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|431754384|ref|ZP_19543045.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|431758862|ref|ZP_19547483.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|431766288|ref|ZP_19554781.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|431766752|ref|ZP_19555213.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|431770371|ref|ZP_19558771.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|431772892|ref|ZP_19561228.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|431776242|ref|ZP_19564509.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|431778301|ref|ZP_19566512.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|431782343|ref|ZP_19570478.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|431785272|ref|ZP_19573298.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|447912882|ref|YP_007394294.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
gi|260074802|gb|EEW63118.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|291589275|gb|EFF21085.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|291592309|gb|EFF23923.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|291595061|gb|EFF26404.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|291598485|gb|EFF29554.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|291601070|gb|EFF31359.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|291604657|gb|EFF34142.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|313589980|gb|EFR68825.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|313593646|gb|EFR72491.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|313599259|gb|EFR78104.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|364091873|gb|EHM34296.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|378938220|gb|AFC63292.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|402923340|gb|EJX43637.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|402936419|gb|EJX55600.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|402944868|gb|EJX63257.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|402958458|gb|EJX75771.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|402966069|gb|EJX82740.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|402972211|gb|EJX88429.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|402976087|gb|EJX92008.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|402981505|gb|EJX97031.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|402982909|gb|EJX98342.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|402986636|gb|EJY01750.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|402996323|gb|EJY10715.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|403001339|gb|EJY15400.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|403009171|gb|EJY22635.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|403011657|gb|EJY24951.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|403014602|gb|EJY27590.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|425724317|gb|EKU87201.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430439541|gb|ELA49877.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430443775|gb|ELA53737.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430446564|gb|ELA56232.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430482882|gb|ELA59981.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430488597|gb|ELA65259.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430497122|gb|ELA73181.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430536144|gb|ELA76521.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430538959|gb|ELA79228.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430541645|gb|ELA81790.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430548040|gb|ELA87945.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430549232|gb|ELA89064.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430553974|gb|ELA93648.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430556622|gb|ELA96119.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|430559030|gb|ELA98412.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430572146|gb|ELB11012.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|430577280|gb|ELB15885.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|430581569|gb|ELB20014.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|430584158|gb|ELB22508.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|430586974|gb|ELB25208.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|430587682|gb|ELB25903.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|430594451|gb|ELB32420.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|430603063|gb|ELB40606.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|430606888|gb|ELB44225.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|430613079|gb|ELB50102.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|430618978|gb|ELB55806.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|430626989|gb|ELB63532.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|430627064|gb|ELB63600.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|430631987|gb|ELB68278.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|430635298|gb|ELB71394.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|430637408|gb|ELB73424.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|430641576|gb|ELB77377.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|430643847|gb|ELB79550.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|430647678|gb|ELB83119.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|430647759|gb|ELB83198.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|445188591|gb|AGE30233.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
Length = 409
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 312
>gi|431228354|ref|ZP_19501495.1| ribosomal protein S1 [Enterococcus faecium E1622]
gi|430574656|gb|ELB13419.1| ribosomal protein S1 [Enterococcus faecium E1622]
Length = 409
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L+ D+V VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLSVNDDVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 312
>gi|424924245|ref|ZP_18347606.1| ribosomal protein S1 [Pseudomonas fluorescens R124]
gi|404305405|gb|EJZ59367.1| ribosomal protein S1 [Pseudomonas fluorescens R124]
Length = 562
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 430 RISLGIKQLESDPFSE 445
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L+
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSLKSA 539
Query: 143 IPQDG 147
+G
Sbjct: 540 PAAEG 544
>gi|77460293|ref|YP_349800.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
gi|77384296|gb|ABA75809.1| 30S ribosomal protein S1 [Pseudomonas fluorescens Pf0-1]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 430 RISLGIKQLESDPFSE 445
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 291 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 344
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 345 SLGIKQCKSNP 355
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R+ L EG EV K+I +DR+ +I+LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNALKEGQEVEAKIISVDRKSRQISLSIKSKDDAEEKEAIQSL-KA 538
Query: 143 IPQ 145
P+
Sbjct: 539 APE 541
>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
Length = 549
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS------ 54
+ SH +P K++ + G KV++ N E K +V S ++ + + +S
Sbjct: 122 LPASHIDIQPPKNLDQ----YIGQTYDYKVLKINLERKNIVLSRRELIEEQRASKRRDLL 177
Query: 55 -RVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
RVN D+ G D+GAFI L DG+ GL+H++++SW I ++L +G+E
Sbjct: 178 ERVNPGDVVKGVVKNITDFGAFIDL---DGM---DGLLHITDMSWGRISHPSEMLKQGEE 231
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDP 134
+ V +I+I+REK R++L +KQ + +P
Sbjct: 232 IDVMIIEINREKERVSLGLKQTKSNP 257
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 37 MKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV 91
MK+L D W R + D+ G +GAF+ L+ H+ GLVH+S++
Sbjct: 424 MKQLA----DDPWEDIDGRFRIGDVVSGTISKITSFGAFVELQ-----DHIDGLVHISQI 474
Query: 92 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
S + ++ I+D+++ G EV +VIKIDRE+ R+ LSIK D
Sbjct: 475 SEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIKAANYD 516
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFS---EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V +I+ N E +++ K W ++ V G+ YGAFI +
Sbjct: 229 GEEIDVMIIEINREKERVSLGLKQTKSNPWQDIEAKYPVGAKVAGKVVNLVPYGAFIEIE 288
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHV+E+SW I ++L GDEV V+ I +++ +I+L I+QL+ +
Sbjct: 289 -----EGVEGLVHVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIRQLDPN 343
Query: 134 P 134
P
Sbjct: 344 P 344
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAF+ L + G+VHVS++SW I ++L + DE+ V+ +D RI+L
Sbjct: 368 YGAFVELE-----EGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQRISL 422
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 423 GMKQLADDP 431
>gi|430833535|ref|ZP_19451547.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430838908|ref|ZP_19456851.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430858583|ref|ZP_19476210.1| ribosomal protein S1 [Enterococcus faecium E1552]
gi|430486276|gb|ELA63135.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430491309|gb|ELA67782.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430545210|gb|ELA85196.1| ribosomal protein S1 [Enterococcus faecium E1552]
Length = 409
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKTVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 312
>gi|398973366|ref|ZP_10684325.1| ribosomal protein S1 [Pseudomonas sp. GM25]
gi|398143082|gb|EJM31964.1| ribosomal protein S1 [Pseudomonas sp. GM25]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 430 RISLGIKQLESDPFSE 445
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG +V K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGQQVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KA 538
Query: 143 IPQ 145
P+
Sbjct: 539 APE 541
>gi|388469683|ref|ZP_10143892.1| ribosomal protein S1 [Pseudomonas synxantha BG33R]
gi|388006380|gb|EIK67646.1| ribosomal protein S1 [Pseudomonas synxantha BG33R]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L++
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSLKEA 539
Query: 143 IPQ 145
P+
Sbjct: 540 APE 542
>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
Length = 401
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 72/129 (55%), Gaps = 18/129 (13%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----D 66
K G + +K+ + + +L+ S KD + ++K +S++ V D+ G+ +
Sbjct: 151 KPYMGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTN 210
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI + DGL VH+SE+S+ + D+L G +V+VKVI ID +++RI+LS
Sbjct: 211 FGAFIDVGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLS 264
Query: 127 IKQLEEDPL 135
IKQ E P
Sbjct: 265 IKQTEPSPF 273
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + ++ ++ DIF G ++GAF+ +
Sbjct: 244 GQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQATANLHDGDIFEGEVKSLTNFGAFVEV- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 -ADGI---QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|149920266|ref|ZP_01908737.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1]
gi|149818853|gb|EDM78293.1| 30S ribosomal protein S1 [Plesiocystis pacifica SIR-1]
Length = 567
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 22/142 (15%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----------RDYGAF 70
G + VKV++ N E +++ K + + +N E+ ++ +DYGAF
Sbjct: 248 VGDKVKVKVLKFNSESERVSLGLKQITPDPW---INAEEKYIPGTVVQGKVVSIKDYGAF 304
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
I L + GLVHVSE+SW I++ + ++N DEV+ V+ ID ++RI+L +KQ
Sbjct: 305 IELE-----EGIEGLVHVSEMSWTRQIKNPKQVVNLSDEVKAVVLDIDVSQNRISLGMKQ 359
Query: 130 LEEDPLLETLEKVIPQDGSVIS 151
LEE+P + LEK P G+V++
Sbjct: 360 LEENPYEKVLEKYPP--GTVVA 379
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL +H++++SW I ++ GD+V+VKV+K + E R++L
Sbjct: 215 DYGAFIDLGGIDGL------LHITDMSWGRINHPSELFQVGDKVKVKVLKFNSESERVSL 268
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVI 150
+KQ+ DP + EK IP G+V+
Sbjct: 269 GLKQITPDPWINAEEKYIP--GTVV 291
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEE--MKKLVFSEKDAVWNKYSSRVNV 58
MS + K P++ ++ ++ + ++ + V Q MK+L + + V KY V
Sbjct: 320 MSWTRQIKNPKQVVN-LSDEVKAVVLDIDVSQNRISLGMKQLEENPYEKVLEKYPPGTVV 378
Query: 59 EDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR---DILNEGDEVRVKVI 114
+ D+G F+ L + GLVH++++SW Q +R DI +GDEV+ V+
Sbjct: 379 AGVIRNIADFGVFVELE-----PGIDGLVHITDLSW--TQRVRHPSDIYKKGDEVQAAVL 431
Query: 115 KIDR--EKSRITLSIKQLEEDP 134
ID EK +I+L IKQL DP
Sbjct: 432 NIDNSGEKPKISLGIKQLSSDP 453
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF + + + GL+H+SE+S + I+D R +L G E R +VI++D + +I L
Sbjct: 476 DFGAFAEI-----IPGVEGLIHISEISEERIEDPRQVLEPGQECRAEVIQLDANERKIGL 530
Query: 126 SIK 128
SIK
Sbjct: 531 SIK 533
>gi|444378755|ref|ZP_21177945.1| SSU ribosomal protein S1p [Enterovibrio sp. AK16]
gi|443677097|gb|ELT83788.1| SSU ribosomal protein S1p [Enterovibrio sp. AK16]
Length = 556
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W ++ N D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQNKGDRVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +RD +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRD-FKKGDEISAVVLQVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+EEDP L + G+++ + + T+E + G+
Sbjct: 427 ERISLGIKQMEEDPFNNYLAD--NKKGAIVKGKVTAVDAKGATVELIEGV 474
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SE S D ++D +L GDEV K +DR+ I LS++ + EE + TL
Sbjct: 476 GYLRASEASRDRVEDATLVLAVGDEVEAKFTGVDRKNRVINLSVRAKDEAEEQEAMATLN 535
Query: 141 KVIPQD-GSVISDSSSMSSS 159
K G+ ++D+ + S
Sbjct: 536 KADEASFGNAMADAFKAAKS 555
>gi|257877994|ref|ZP_05657647.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
gi|257881219|ref|ZP_05660872.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
gi|257889807|ref|ZP_05669460.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
gi|257892256|ref|ZP_05671909.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
gi|314938007|ref|ZP_07845317.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
gi|314948740|ref|ZP_07852112.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
gi|314951758|ref|ZP_07854797.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
gi|389868291|ref|YP_006375714.1| 30S ribosomal protein S1 [Enterococcus faecium DO]
gi|424796676|ref|ZP_18222374.1| putative ribosomal protein S1 [Enterococcus faecium S447]
gi|424825698|ref|ZP_18250661.1| putative ribosomal protein S1 [Enterococcus faecium R501]
gi|424857065|ref|ZP_18281257.1| putative ribosomal protein S1 [Enterococcus faecium R499]
gi|424868168|ref|ZP_18291929.1| putative ribosomal protein S1 [Enterococcus faecium R497]
gi|424954676|ref|ZP_18369564.1| putative ribosomal protein S1 [Enterococcus faecium R494]
gi|424960233|ref|ZP_18374771.1| putative ribosomal protein S1 [Enterococcus faecium P1986]
gi|424963101|ref|ZP_18377366.1| putative ribosomal protein S1 [Enterococcus faecium P1190]
gi|424967146|ref|ZP_18380878.1| putative ribosomal protein S1 [Enterococcus faecium P1140]
gi|424969833|ref|ZP_18383381.1| putative ribosomal protein S1 [Enterococcus faecium P1139]
gi|424976261|ref|ZP_18389364.1| putative ribosomal protein S1 [Enterococcus faecium P1123]
gi|424994815|ref|ZP_18406737.1| putative ribosomal protein S1 [Enterococcus faecium ERV168]
gi|425003664|ref|ZP_18415017.1| putative ribosomal protein S1 [Enterococcus faecium ERV102]
gi|425009173|ref|ZP_18420205.1| putative ribosomal protein S1 [Enterococcus faecium ERV1]
gi|425017169|ref|ZP_18427692.1| putative ribosomal protein S1 [Enterococcus faecium C621]
gi|425036861|ref|ZP_18441576.1| putative ribosomal protein S1 [Enterococcus faecium 514]
gi|425038780|ref|ZP_18443370.1| putative ribosomal protein S1 [Enterococcus faecium 513]
gi|425043827|ref|ZP_18448029.1| putative ribosomal protein S1 [Enterococcus faecium 511]
gi|425045673|ref|ZP_18449760.1| putative ribosomal protein S1 [Enterococcus faecium 510]
gi|425049502|ref|ZP_18453349.1| putative ribosomal protein S1 [Enterococcus faecium 509]
gi|425051418|ref|ZP_18455084.1| putative ribosomal protein S1 [Enterococcus faecium 506]
gi|425059359|ref|ZP_18462705.1| putative ribosomal protein S1 [Enterococcus faecium 504]
gi|425062179|ref|ZP_18465350.1| putative ribosomal protein S1 [Enterococcus faecium 503]
gi|257812222|gb|EEV40980.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
gi|257816877|gb|EEV44205.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
gi|257826167|gb|EEV52793.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
gi|257828635|gb|EEV55242.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
gi|313596037|gb|EFR74882.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
gi|313642582|gb|EFS07162.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
gi|313644806|gb|EFS09386.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
gi|388533540|gb|AFK58732.1| ribosomal protein S1 [Enterococcus faecium DO]
gi|402922682|gb|EJX43037.1| putative ribosomal protein S1 [Enterococcus faecium S447]
gi|402925214|gb|EJX45375.1| putative ribosomal protein S1 [Enterococcus faecium R501]
gi|402929490|gb|EJX49244.1| putative ribosomal protein S1 [Enterococcus faecium R499]
gi|402936172|gb|EJX55369.1| putative ribosomal protein S1 [Enterococcus faecium R494]
gi|402937338|gb|EJX56456.1| putative ribosomal protein S1 [Enterococcus faecium R497]
gi|402948595|gb|EJX66719.1| putative ribosomal protein S1 [Enterococcus faecium P1986]
gi|402950215|gb|EJX68224.1| putative ribosomal protein S1 [Enterococcus faecium P1190]
gi|402954987|gb|EJX72561.1| putative ribosomal protein S1 [Enterococcus faecium P1140]
gi|402963166|gb|EJX80052.1| putative ribosomal protein S1 [Enterococcus faecium P1139]
gi|402970064|gb|EJX86430.1| putative ribosomal protein S1 [Enterococcus faecium P1123]
gi|402979027|gb|EJX94721.1| putative ribosomal protein S1 [Enterococcus faecium ERV168]
gi|402990398|gb|EJY05271.1| putative ribosomal protein S1 [Enterococcus faecium ERV1]
gi|402991450|gb|EJY06237.1| putative ribosomal protein S1 [Enterococcus faecium ERV102]
gi|403004933|gb|EJY18689.1| putative ribosomal protein S1 [Enterococcus faecium C621]
gi|403013161|gb|EJY26288.1| putative ribosomal protein S1 [Enterococcus faecium 514]
gi|403017870|gb|EJY30593.1| putative ribosomal protein S1 [Enterococcus faecium 511]
gi|403018641|gb|EJY31309.1| putative ribosomal protein S1 [Enterococcus faecium 513]
gi|403026596|gb|EJY38559.1| putative ribosomal protein S1 [Enterococcus faecium 510]
gi|403027362|gb|EJY39255.1| putative ribosomal protein S1 [Enterococcus faecium 509]
gi|403035464|gb|EJY46852.1| putative ribosomal protein S1 [Enterococcus faecium 504]
gi|403037686|gb|EJY48950.1| putative ribosomal protein S1 [Enterococcus faecium 506]
gi|403039296|gb|EJY50459.1| putative ribosomal protein S1 [Enterococcus faecium 503]
Length = 417
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 261 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 319
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 375
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 169 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 228
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 229 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDT 282
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 283 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 320
>gi|398859100|ref|ZP_10614782.1| ribosomal protein S1 [Pseudomonas sp. GM79]
gi|398237713|gb|EJN23459.1| ribosomal protein S1 [Pseudomonas sp. GM79]
Length = 560
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 430 RISLGIKQLESDPFSE 445
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L V
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSLNSV 539
Query: 143 --IPQDGSVIS 151
P D ++ +
Sbjct: 540 QDAPADTTMAA 550
>gi|387892910|ref|YP_006323207.1| 30S ribosomal protein S1 [Pseudomonas fluorescens A506]
gi|423690710|ref|ZP_17665230.1| ribosomal protein S1 [Pseudomonas fluorescens SS101]
gi|387163095|gb|AFJ58294.1| ribosomal protein S1 [Pseudomonas fluorescens A506]
gi|388001434|gb|EIK62763.1| ribosomal protein S1 [Pseudomonas fluorescens SS101]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L++
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSLKEA 539
Query: 143 IPQ 145
P+
Sbjct: 540 APE 542
>gi|404401713|ref|ZP_10993297.1| 30S ribosomal protein S1 [Pseudomonas fuscovaginae UPB0736]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 430 RISLGIKQLESDPFSE 445
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|398964539|ref|ZP_10680357.1| ribosomal protein S1 [Pseudomonas sp. GM30]
gi|398148257|gb|EJM36941.1| ribosomal protein S1 [Pseudomonas sp. GM30]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 430 RISLGIKQLESDPFSE 445
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KA 538
Query: 143 IPQ 145
P+
Sbjct: 539 APE 541
>gi|6175044|sp|P50889.2|RS1_LEULA RecName: Full=30S ribosomal protein S1
gi|1565296|gb|AAB08978.1| ribosomal protein S1 homolog; sequence specific DNA-binding protein
[Leuconostoc lactis]
Length = 429
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L DGL VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+L
Sbjct: 243 DFGAFVDLGGVDGL------VHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISL 296
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
SIK + P E +++ GSV+ + +E LPG+
Sbjct: 297 SIKATQRGPWDEAADQIAA--GSVLEGTVKRVKDFGAFVEILPGI 339
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 277 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI- 335
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 336 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
>gi|398995415|ref|ZP_10698299.1| ribosomal protein S1 [Pseudomonas sp. GM21]
gi|398130007|gb|EJM19359.1| ribosomal protein S1 [Pseudomonas sp. GM21]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KT 538
Query: 143 IPQ 145
P+
Sbjct: 539 APE 541
>gi|388545944|ref|ZP_10149223.1| 30S ribosomal protein S1 [Pseudomonas sp. M47T1]
gi|388276061|gb|EIK95644.1| 30S ribosomal protein S1 [Pseudomonas sp. M47T1]
Length = 562
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEVVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
KQL EDP + ++ P++ V++ ++++
Sbjct: 258 GFKQLGEDPWV-AIKARYPENTRVMARVTNLT 288
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDEISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRRYKKGDELNTVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE DP
Sbjct: 428 RISLGIKQLESDPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVINLSIK 520
>gi|408482966|ref|ZP_11189185.1| 30S ribosomal protein S1 [Pseudomonas sp. R81]
Length = 561
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L+
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSLK 537
>gi|398879374|ref|ZP_10634469.1| ribosomal protein S1 [Pseudomonas sp. GM67]
gi|398885421|ref|ZP_10640333.1| ribosomal protein S1 [Pseudomonas sp. GM60]
gi|398192549|gb|EJM79698.1| ribosomal protein S1 [Pseudomonas sp. GM60]
gi|398196537|gb|EJM83538.1| ribosomal protein S1 [Pseudomonas sp. GM67]
Length = 562
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KT 538
Query: 143 IPQDGSVISDSS 154
P+ G +D++
Sbjct: 539 APE-GEAAADTT 549
>gi|398850879|ref|ZP_10607574.1| ribosomal protein S1 [Pseudomonas sp. GM80]
gi|398247727|gb|EJN33162.1| ribosomal protein S1 [Pseudomonas sp. GM80]
Length = 561
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 315 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 374
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 375 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 428
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 429 ERISLGIKQLESDPFSE 445
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KA 538
Query: 143 IPQDGSVISDSSSM 156
P+ +V + +++
Sbjct: 539 APEGEAVDTTMAAL 552
>gi|423096548|ref|ZP_17084344.1| ribosomal protein S1 [Pseudomonas fluorescens Q2-87]
gi|397886827|gb|EJL03310.1| ribosomal protein S1 [Pseudomonas fluorescens Q2-87]
Length = 561
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 291 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 344
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 345 SLGIKQCKSNP 355
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ---LEEDPLLETLEKV 142
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK EE +++L K
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIKSKDDAEEKEAIQSL-KA 538
Query: 143 IPQ 145
P+
Sbjct: 539 APE 541
>gi|257884883|ref|ZP_05664536.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
gi|257820721|gb|EEV47869.1| ribosomal protein S1 [Enterococcus faecium 1,231,501]
Length = 417
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 261 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 319
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 375
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 169 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 228
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 229 VDLGGIDGL------VHVSEISHSHVAKPSDLLAVNDDVNVKVLSINPEQERVSLSIKDT 282
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 283 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 320
>gi|398985770|ref|ZP_10691236.1| ribosomal protein S1 [Pseudomonas sp. GM24]
gi|399011102|ref|ZP_10713435.1| ribosomal protein S1 [Pseudomonas sp. GM16]
gi|398118440|gb|EJM08171.1| ribosomal protein S1 [Pseudomonas sp. GM16]
gi|398153694|gb|EJM42190.1| ribosomal protein S1 [Pseudomonas sp. GM24]
Length = 560
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|373852974|ref|ZP_09595774.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
gi|391229292|ref|ZP_10265498.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
gi|372475203|gb|EHP35213.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
gi|391218953|gb|EIP97373.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
Length = 552
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 22/153 (14%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNV 58
M SH +P K++ + G KV++ N+E K +V S ++ + + S R +
Sbjct: 122 MPASHIDIQPPKNLDQ----YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLL 177
Query: 59 EDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
E I G+ D+GAFI L DG+ GL+H++++SW I ++L +G+E
Sbjct: 178 ESIEPGQVRKGVVKNITDFGAFIDL---DGM---DGLLHITDMSWGRIAHPSEMLKQGEE 231
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
++V +I+++REK R++L +KQ ++P E +K
Sbjct: 232 IQVMIIEVNREKERVSLGLKQTTKNPWDEIEQK 264
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+ S + D+ G +GAF+ L+ DG+ GLVH+S++S + I ++D+L
Sbjct: 432 WSDIDSFFKIGDVVKGTVTKITSFGAFVDLK--DGI---DGLVHISQISEERIDKVKDVL 486
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
G EV +VIKIDR++ R+ LSIK P
Sbjct: 487 KPGQEVTARVIKIDRDERRLGLSIKAANYSP 517
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI L + G+VHVS++SW + ++L +GDEV V+ +D + RI+L
Sbjct: 368 YGAFIELE-----EGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQQRISL 422
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 423 GMKQLAIDP 431
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V +I+ N E +++ K W++ + V G+ YGAFI +
Sbjct: 229 GEEIQVMIIEVNREKERVSLGLKQTTKNPWDEIEQKFPVGAKIHGKVVNLVPYGAFIEIE 288
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH++E+SW I ++L G E+ V+ I ++ +I+L ++QLE +
Sbjct: 289 -----PGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLRQLEPN 343
Query: 134 P 134
P
Sbjct: 344 P 344
>gi|91205227|ref|YP_537582.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
gi|123388135|sp|Q1RJH1.1|RS1_RICBR RecName: Full=30S ribosomal protein S1
gi|91068771|gb|ABE04493.1| 30S ribosomal protein S1 [Rickettsia bellii RML369-C]
Length = 572
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ NEE K++ K W K V G+ DYG FI L+ D
Sbjct: 257 VKVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFIELK--D 314
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R L G EV V+++D EK R++LSIKQ +++PL+
Sbjct: 315 GL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLI 371
Query: 137 ETLE 140
+ E
Sbjct: 372 KFAE 375
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK + E RI+L
Sbjct: 220 DYGAFIDLGSVDGLLHLT------DISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISL 273
Query: 126 SIKQLEEDP 134
+KQL+ +P
Sbjct: 274 GMKQLDYNP 282
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L +L G++H +++W D ++ +GDEV KV+ I+ EK +I+
Sbjct: 392 DFGIFVALS-----DNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQIS 446
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 447 LGIKQLTPNP 456
>gi|354582632|ref|ZP_09001533.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
gi|353198924|gb|EHB64390.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
Length = 407
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSS---RVNVE----DIFVGR-----DYGAF 70
G + VKV + + E K++ S+KD + ++ + +V E + G +GAF
Sbjct: 158 GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMAELKEGQVLEGTVQRLTQFGAF 217
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VHVSE++W+ + D+L+EGD+VRVKV+K+D EK +I+LSIK
Sbjct: 218 VDVGGVDGL------VHVSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAA 271
Query: 131 EEDP 134
P
Sbjct: 272 GPGP 275
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E K+ S K A W + + DI G +GAF+ L
Sbjct: 247 GDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFGAFVEL- 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+S++S I +++L EG EV+VKV+ I+ + R++LSIK+ EE P
Sbjct: 306 ----APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSIKETEEAP 361
>gi|406946421|gb|EKD77633.1| 30S ribosomal protein S1, partial [uncultured bacterium]
Length = 438
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W ++ ++LN G+E++VKV+K DR+K R++L
Sbjct: 206 DYGAFIELGGIDGLLHIT------DMAWKRVKHPSELLNVGEEIKVKVLKFDRDKQRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 16/115 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I V V++ +E+ +++ K W+ +SS+ V + G D+G FI L P
Sbjct: 330 IEVIVLEIDEDRRRISLGVKQCKANPWSDFSSKHQVGEKLKGNVCSITDFGLFIAL--PG 387
Query: 78 GLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
G+ GLVH+S++SW Q +R +GDEV ++ ID E+ RI+L +KQL
Sbjct: 388 GI---DGLVHLSDISWTEAGEQAVR-AYQKGDEVEAVILAIDPERERISLGVKQL 438
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G I VKV++ + + +++ K + W+ + R G+ DYG F+ L
Sbjct: 239 VGEEIKVKVLKFDRDKQRVSLGLKQLGEDPWHNVAKRYPASTKITGKVTNITDYGCFVEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVH+SE+ W ++I ++N +E+ V V++ID ++ RI+L +KQ +
Sbjct: 299 E-----EGVEGLVHMSEMDWTN-KNIHPSKVVNLHEEIEVIVLEIDEDRRRISLGVKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 ANP 355
>gi|402699907|ref|ZP_10847886.1| 30S ribosomal protein S1 [Pseudomonas fragi A22]
Length = 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 291 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 344
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 345 SLGIKQCKSNP 355
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L PD + + SE+S D I+D R++L EG+EV K+I +DR+ I LSI
Sbjct: 467 GAIITLA-PD----IEATLKASEISRDRIEDARNVLKEGEEVEAKIISVDRKSRVIQLSI 521
Query: 128 K 128
K
Sbjct: 522 K 522
>gi|422651727|ref|ZP_16714519.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330964802|gb|EGH65062.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 315 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 374
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 375 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 428
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 429 ERISLGIKQLESDPFSE 445
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ +Y V + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTALVTNLTDYGCFAELE 299
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 300 -----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKS 353
Query: 133 DP 134
+P
Sbjct: 354 NP 355
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 522
>gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group]
gi|113548409|dbj|BAF11852.1| Os03g0315800, partial [Oryza sativa Japonica Group]
Length = 390
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 211 LPLKFVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI------G 263
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 264 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 317
>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
Length = 403
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 19/138 (13%)
Query: 16 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVG---- 64
E+A+ + G + +KVI+ N +L+ SE+ A + R + D+ G
Sbjct: 188 EMAR-MVGQTLMLKVIEINRNRNRLILSERQAAMDMREGRKGELLSALKEGDVREGIVTS 246
Query: 65 -RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRI 123
D+GAF+ + DGL VH+SE+SW I+ ++L GD+V+V V+ ID E+ RI
Sbjct: 247 VCDFGAFVDIGGADGL------VHLSEISWSRIKHPGEVLKPGDKVQVYVLSIDNERKRI 300
Query: 124 TLSIKQLEEDPLLETLEK 141
LS+K+ + +P E+
Sbjct: 301 ALSLKRTQHEPWATVGER 318
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V+ + E K++ S K W R + + G +GAF+ R
Sbjct: 283 GDKVQVYVLSIDNERKRIALSLKRTQHEPWATVGERYQIGQMVEGVVTQLAPFGAFV--R 340
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GL+HVSE+ +Q RD+L EGD V+ ++I+ID + RI LS++ +D
Sbjct: 341 IEDGV---EGLIHVSEMGDGRVQHPRDVLQEGDVVQARIIRIDPARKRIGLSMRPPSDD 396
>gi|406978767|gb|EKE00663.1| hypothetical protein ACD_21C00296G0010 [uncultured bacterium]
Length = 551
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW I+ +IL GDE++VKV+K DR+K+R++L
Sbjct: 205 DYGAFIDLGGVDGLLHIT------DMSWKRIRHPNEILKLGDEIQVKVLKYDRDKNRVSL 258
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 259 GLKQLADDP 267
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K++H G + VKV++ + + +++ K W +YS+ + ++ G+
Sbjct: 314 NKNVHPAKVVSQGQEVEVKVLEIDGDRRRISLGMKQCKLNPWKEYSNLHSKDEKVSGKIK 373
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G F+ L DG + GLVH+S++SW + IR+ +G ++ ++ ID ++
Sbjct: 374 SITDFGIFVGL---DG--DIDGLVHLSDISWTEPGEKAIRE-YKKGQDIEAVILAIDPDR 427
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLE D E L V GSV+ + ++ S TI+ G+
Sbjct: 428 ERISLGIKQLEHDVYTEYL--VSHPKGSVVEGVVTEVNAKSATIDLGDGI 475
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + + ++ K D W + R V G DYG F+ +
Sbjct: 239 GDEIQVKVLKYDRDKNRVSLGLKQLADDPWRDINRRYPVGTRLFGHITNITDYGCFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P + GLVH+SE+ W +++ ++++G EV VKV++ID ++ RI+L +KQ +
Sbjct: 299 -PG----IEGLVHMSEIDW-TNKNVHPAKVVSQGQEVEVKVLEIDGDRRRISLGMKQCKL 352
Query: 133 DPLLE 137
+P E
Sbjct: 353 NPWKE 357
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G V ++VS + ++D + L EGD V KV+ ID++ + LSIK+++
Sbjct: 475 ILGKVKAADVSREKVKDASEFLKEGDNVEAKVLGIDKKSRAVNLSIKEMQ 524
>gi|426403003|ref|YP_007021974.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus str. Tiberius]
gi|425859671|gb|AFY00707.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus str. Tiberius]
Length = 599
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW ++ ++LN GDE++VKV+K D+EK R++L
Sbjct: 241 DYGAFIDLGGMDGLLHIT------DMSWGRVKHPSEMLNVGDEIQVKVLKYDKEKERVSL 294
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 295 GMKQLHADP 303
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G FI + + GLVH+S+ SW + ++ +G +VR V+ +D E R +
Sbjct: 413 DFGIFIGIE-----EGIDGLVHISDFSWTKRVNHPNELYAKGQKVRAVVLGVDIENERFS 467
Query: 125 LSIKQLEEDP 134
L IKQLE DP
Sbjct: 468 LGIKQLESDP 477
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L + GL+H+SE++ + I + + + G V+ +VI ID++ +I L
Sbjct: 500 DFGAFVELE-----SDIEGLIHISELTTEKINSVEEFIKPGQSVKAEVISIDKDARKIGL 554
Query: 126 SIK 128
S K
Sbjct: 555 SAK 557
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 16/137 (11%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ ++E MK+L ++V Y ++ V +YGAF+ L
Sbjct: 275 GDEIQVKVLKYDKEKERVSLGMKQLHADPWESVKASYPPGTKLKGKVVSLAEYGAFVEL- 333
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+G+ GL+HVSE+SW ++ I+ EV V V+++D E RI+L +KQL+ +
Sbjct: 334 -GEGI---EGLIHVSEMSWTKRVKHPSQIVTVDQEVEVVVLEVDTENRRISLGMKQLQAN 389
Query: 134 PLLETLEKVIPQDGSVI 150
P +E E P G++I
Sbjct: 390 PWVEMKESYAP--GTII 404
>gi|386283601|ref|ZP_10060825.1| 30S ribosomal protein S1 [Sulfurovum sp. AR]
gi|385345144|gb|EIF51856.1| 30S ribosomal protein S1 [Sulfurovum sp. AR]
Length = 550
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 72/120 (60%), Gaps = 14/120 (11%)
Query: 24 SIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRF 75
S I+V+VI+ ++E ++L S K+ + + +++ V D+ G D+GAF+ +
Sbjct: 328 SEINVEVIEIDKEGRRLRVSLKNLLPKPMDAFTAEHKVGDVVTGTVTSITDFGAFVKVG- 386
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GL+H E+SWD ++ + LN GDEV VK+IKIDR+ +I+LS K LE+ P+
Sbjct: 387 -----TVEGLLHNQEISWDKAKNAKSELNVGDEVEVKIIKIDRDAGKISLSKKALEDSPV 441
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++V + +++ + L S KDA W S + V D YG F+ L
Sbjct: 240 GDQVNVIALDYDKKKRHLSLSIKDANPDPWADIDSIIGVGDTVTATVSNIEPYGVFVDLG 299
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L +HVSE+SWD ++ +D L E+ V+VI+ID+E R+ +S+K L
Sbjct: 300 -----EDLEAFLHVSEISWDKNVKHPKDYLELNSEINVEVIEIDKEGRRLRVSLKNLLPK 354
Query: 134 PL 135
P+
Sbjct: 355 PM 356
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YG F+ + DGL H + + H V+ +EGD+V V + D++K ++LS
Sbjct: 207 YGMFVDVGGIDGLVHYSQISHKGPVNP------SKYFSEGDQVNVIALDYDKKKRHLSLS 260
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP 166
IK DP + S+I +++++ SN IEP
Sbjct: 261 IKDANPDPWADI--------DSIIGVGDTVTATVSN-IEP 291
>gi|70731658|ref|YP_261400.1| 30S ribosomal protein S1 [Pseudomonas protegens Pf-5]
gi|389681236|ref|ZP_10172581.1| ribosomal protein S1 [Pseudomonas chlororaphis O6]
gi|399010119|ref|ZP_10712496.1| ribosomal protein S1 [Pseudomonas sp. GM17]
gi|425900776|ref|ZP_18877367.1| ribosomal protein S1 [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|68345957|gb|AAY93563.1| ribosomal protein S1 [Pseudomonas protegens Pf-5]
gi|388554772|gb|EIM18020.1| ribosomal protein S1 [Pseudomonas chlororaphis O6]
gi|397883807|gb|EJL00294.1| ribosomal protein S1 [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398107673|gb|EJL97667.1| ribosomal protein S1 [Pseudomonas sp. GM17]
Length = 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D I+D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRIEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|424765175|ref|ZP_18192578.1| putative ribosomal protein S1 [Enterococcus faecium TX1337RF]
gi|402417197|gb|EJV49501.1| putative ribosomal protein S1 [Enterococcus faecium TX1337RF]
Length = 417
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 261 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG 319
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 375
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 169 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 228
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L DEV VKV+ I+ E+ R++LSIK
Sbjct: 229 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDT 282
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 283 QPGPWSEIDTKA--PVGAVLDGTVKRLTSFGAFVEVFPGV 320
>gi|28868956|ref|NP_791575.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato str.
DC3000]
gi|66046871|ref|YP_236712.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B728a]
gi|71737484|ref|YP_275804.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola
1448A]
gi|213968716|ref|ZP_03396858.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
gi|237799023|ref|ZP_04587484.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
gi|257485842|ref|ZP_05639883.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|289623736|ref|ZP_06456690.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289648178|ref|ZP_06479521.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
2250]
gi|289677165|ref|ZP_06498055.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae FF5]
gi|301381331|ref|ZP_07229749.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato Max13]
gi|302130032|ref|ZP_07256022.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|302187670|ref|ZP_07264343.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae 642]
gi|416017874|ref|ZP_11564911.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
B076]
gi|416028555|ref|ZP_11571500.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422297745|ref|ZP_16385373.1| 30S ribosomal protein S1 [Pseudomonas avellanae BPIC 631]
gi|422581253|ref|ZP_16656396.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|422590052|ref|ZP_16664710.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|422596362|ref|ZP_16670644.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422605686|ref|ZP_16677699.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. mori str.
301020]
gi|422646995|ref|ZP_16710126.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|422658217|ref|ZP_16720653.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|422674614|ref|ZP_16733966.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aceris str.
M302273]
gi|422683598|ref|ZP_16741857.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|424068785|ref|ZP_17806234.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073206|ref|ZP_17810624.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440722403|ref|ZP_20902784.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34876]
gi|440727495|ref|ZP_20907724.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34881]
gi|440745161|ref|ZP_20924457.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP39023]
gi|443642916|ref|ZP_21126766.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B64]
gi|28852196|gb|AAO55270.1| ribosomal protein S1 [Pseudomonas syringae pv. tomato str. DC3000]
gi|63257578|gb|AAY38674.1| SSU ribosomal protein S1P [Pseudomonas syringae pv. syringae B728a]
gi|71558037|gb|AAZ37248.1| ribosomal protein S1 [Pseudomonas syringae pv. phaseolicola 1448A]
gi|213926649|gb|EEB60202.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato T1]
gi|298157300|gb|EFH98383.1| SSU ribosomal protein S1p [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320323347|gb|EFW79435.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
B076]
gi|320327544|gb|EFW83556.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330866103|gb|EGH00812.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330877036|gb|EGH11185.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330889341|gb|EGH22002.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. mori str.
301020]
gi|330960540|gb|EGH60800.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330972340|gb|EGH72406.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aceris str.
M302273]
gi|330986661|gb|EGH84764.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331012931|gb|EGH92987.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|331016846|gb|EGH96902.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331021877|gb|EGI01934.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. oryzae str. 1_6]
gi|407990767|gb|EKG32778.1| 30S ribosomal protein S1 [Pseudomonas avellanae BPIC 631]
gi|407996406|gb|EKG36879.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996519|gb|EKG36988.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440361255|gb|ELP98487.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34876]
gi|440363633|gb|ELQ00794.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP34881]
gi|440372837|gb|ELQ09615.1| 30S ribosomal protein S1 [Pseudomonas syringae BRIP39023]
gi|443282933|gb|ELS41938.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. syringae B64]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 315 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 374
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 375 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 428
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 429 ERISLGIKQLESDPFSE 445
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 522
>gi|42522621|ref|NP_968001.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
gi|39575153|emb|CAE78994.1| 30S ribosomal protein S1 [Bdellovibrio bacteriovorus HD100]
Length = 595
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW ++ ++LN GDE++VKV+K D+EK R++L
Sbjct: 237 DYGAFIDLGGMDGLLHIT------DMSWGRVKHPSEMLNVGDEIQVKVLKYDKEKERVSL 290
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 291 GMKQLHADP 299
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G FI + + GLVH+S+ SW + ++ +G +VR V+ +D E R +
Sbjct: 409 DFGIFIGIE-----EGIDGLVHISDFSWTKRVNHPNELYAKGQKVRAVVLGVDIENERFS 463
Query: 125 LSIKQLEEDP 134
L IKQLE DP
Sbjct: 464 LGIKQLESDP 473
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L + GL+H+SE++ + I + + + G V+ +VI ID++ +I L
Sbjct: 496 DFGAFVELE-----SDIEGLIHISELTTEKINSVEEFIKPGQSVKAEVISIDKDARKIGL 550
Query: 126 SIK 128
S K
Sbjct: 551 SAK 553
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 16/137 (11%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ ++E MK+L ++V Y ++ V +YGAF+ L
Sbjct: 271 GDEIQVKVLKYDKEKERVSLGMKQLHADPWESVKASYPPGTKLKGKVVSLAEYGAFVEL- 329
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+G+ GL+HVSE+SW ++ I+ EV V V+++D E RI+L +KQL+ +
Sbjct: 330 -GEGI---EGLIHVSEMSWTKRVKHPSQIVTVDQEVEVVVLEVDTENRRISLGMKQLQAN 385
Query: 134 PLLETLEKVIPQDGSVI 150
P +E E P G++I
Sbjct: 386 PWVEMKESYAP--GTII 400
>gi|121551159|gb|ABM55769.1| RpsA [Pasteuria ramosa]
Length = 392
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 20/162 (12%)
Query: 25 IISVKVIQANEEMKKLVFS-----EKDAVWNKYSSRVNVE-----DIFVGR--DYGAFIH 72
+I++K+ + +++ KL+ S E+ A + ++ N+E D V R D+GAF+
Sbjct: 146 VITMKIAEIDQDSNKLILSCRAVHEEAAQHQREATFNNIEIGSVVDGIVRRLTDFGAFVD 205
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ DGL VH+S++SW + D+LN GDEV+ KV+K DRE RI+LSI+ +
Sbjct: 206 VGAVDGL------VHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIRDTQP 259
Query: 133 DPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
P ++++ D ++ S +E LPG+ +
Sbjct: 260 GPWSGVEDQLVEND--IVKGVVKRLVSFGAFVEILPGVEGLM 299
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRD-----------YGAFI 71
G + KV++ + E ++ S +D +S VED V D +GAF+
Sbjct: 233 GDEVKCKVLKFDRESGRISLSIRDTQPGPWSG---VEDQLVENDIVKGVVKRLVSFGAFV 289
Query: 72 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ L + GL+H+SE+S I +IL EG E+ VK++ +D R++L++ +E
Sbjct: 290 EI-----LPGVEGLMHISEISHRHIVTPSEILKEGQEILVKILNVDSNARRVSLTMCDVE 344
Query: 132 ED 133
++
Sbjct: 345 QN 346
>gi|431756349|ref|ZP_19544981.1| ribosomal protein S1 [Enterococcus faecium E3083]
gi|430620203|gb|ELB57005.1| ribosomal protein S1 [Enterococcus faecium E3083]
Length = 409
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L DEV VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGAVLDGTVKRLTSFGAFVEVFPGV 312
>gi|431751502|ref|ZP_19540190.1| ribosomal protein S1 [Enterococcus faecium E2620]
gi|430615283|gb|ELB52241.1| ribosomal protein S1 [Enterococcus faecium E2620]
Length = 409
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L DEV VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGAVLDGTVKRLTSFGAFVEVFPGV 312
>gi|293570248|ref|ZP_06681317.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
gi|430840956|ref|ZP_19458877.1| ribosomal protein S1 [Enterococcus faecium E1007]
gi|431068950|ref|ZP_19494143.1| ribosomal protein S1 [Enterococcus faecium E1604]
gi|431102177|ref|ZP_19496788.1| ribosomal protein S1 [Enterococcus faecium E1613]
gi|431580923|ref|ZP_19520015.1| ribosomal protein S1 [Enterococcus faecium E1861]
gi|431738037|ref|ZP_19526987.1| ribosomal protein S1 [Enterococcus faecium E1972]
gi|431740465|ref|ZP_19529380.1| ribosomal protein S1 [Enterococcus faecium E2039]
gi|291609655|gb|EFF38916.1| 30S ribosomal protein S1 [Enterococcus faecium E980]
gi|430494687|gb|ELA70922.1| ribosomal protein S1 [Enterococcus faecium E1007]
gi|430567889|gb|ELB06956.1| ribosomal protein S1 [Enterococcus faecium E1604]
gi|430570405|gb|ELB09366.1| ribosomal protein S1 [Enterococcus faecium E1613]
gi|430594690|gb|ELB32654.1| ribosomal protein S1 [Enterococcus faecium E1861]
gi|430598073|gb|ELB35833.1| ribosomal protein S1 [Enterococcus faecium E1972]
gi|430603329|gb|ELB40859.1| ribosomal protein S1 [Enterococcus faecium E2039]
Length = 409
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L DEV VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGAVLDGTVKRLTSFGAFVEVFPGV 312
>gi|257898849|ref|ZP_05678502.1| ribosomal protein S1 [Enterococcus faecium Com15]
gi|425053986|ref|ZP_18457501.1| putative ribosomal protein S1 [Enterococcus faecium 505]
gi|257836761|gb|EEV61835.1| ribosomal protein S1 [Enterococcus faecium Com15]
gi|403036910|gb|EJY48243.1| putative ribosomal protein S1 [Enterococcus faecium 505]
Length = 417
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 261 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG 319
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 375
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 169 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 228
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L DEV VKV+ I+ E+ R++LSIK
Sbjct: 229 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDT 282
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 283 QPGPWSEIDTKA--PVGAVLDGTVKRLTSFGAFVEVFPGV 320
>gi|78485542|ref|YP_391467.1| 30S ribosomal protein S1 [Thiomicrospira crunogena XCL-2]
gi|78363828|gb|ABB41793.1| SSU ribosomal protein S1P [Thiomicrospira crunogena XCL-2]
Length = 557
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W + +++ GDE+ VKV+K DREK+R++L
Sbjct: 205 DYGAFIDLGGIDGLLHIT------DMAWRRVNHPSEVIQVGDEIEVKVLKFDREKNRVSL 258
Query: 126 SIKQLEEDP 134
+KQL+EDP
Sbjct: 259 GMKQLQEDP 267
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-- 64
P K +H G + VK++ ++E +++ S K W +S+ + D G
Sbjct: 319 PSKVVH------LGQEVKVKILDVDQERRRISLSIKQCTVNPWEAFSATHSKGDKISGSI 372
Query: 65 ---RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDRE 119
D+G FI L DG ++ GLVH++++SW + +R+ +GDE+ ++ ID E
Sbjct: 373 KSITDFGIFIGL---DG--NIDGLVHLTDISWSQSGEEAVRE-FKKGDELETVILSIDPE 426
Query: 120 KSRITLSIKQLEEDPLLE 137
+ RI+L +KQLE+DP E
Sbjct: 427 RERISLGLKQLEQDPFGE 444
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E ++ K + W+ +R + +G+ DYGAFI +
Sbjct: 239 GDEIEVKVLKFDREKNRVSLGMKQLQEDPWSDMVARYPIGSEIMGKVANITDYGAFIEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVH SE+ W ++I +++ G EV+VK++ +D+E+ RI+LSIKQ
Sbjct: 299 --DGI---EGLVHTSELDW-TNRNIHPSKVVHLGQEVKVKILDVDQERRRISLSIKQCTV 352
Query: 133 DP 134
+P
Sbjct: 353 NP 354
>gi|398839977|ref|ZP_10597217.1| ribosomal protein S1 [Pseudomonas sp. GM102]
gi|398111565|gb|EJM01447.1| ribosomal protein S1 [Pseudomonas sp. GM102]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|395499782|ref|ZP_10431361.1| 30S ribosomal protein S1 [Pseudomonas sp. PAMC 25886]
gi|395798599|ref|ZP_10477883.1| 30S ribosomal protein S1 [Pseudomonas sp. Ag1]
gi|421143521|ref|ZP_15603460.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BBc6R8]
gi|395337334|gb|EJF69191.1| 30S ribosomal protein S1 [Pseudomonas sp. Ag1]
gi|404505212|gb|EKA19243.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BBc6R8]
Length = 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|312959704|ref|ZP_07774221.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
gi|311286421|gb|EFQ64985.1| small subunit ribosomal protein S1 [Pseudomonas fluorescens WH6]
Length = 560
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLEKV 142
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L++
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSLKET 539
Query: 143 IPQ 145
+P+
Sbjct: 540 VPE 542
>gi|293379547|ref|ZP_06625689.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
gi|431034753|ref|ZP_19491630.1| ribosomal protein S1 [Enterococcus faecium E1590]
gi|431761600|ref|ZP_19550162.1| ribosomal protein S1 [Enterococcus faecium E3548]
gi|292641856|gb|EFF60024.1| 30S ribosomal protein S1 [Enterococcus faecium PC4.1]
gi|430563468|gb|ELB02677.1| ribosomal protein S1 [Enterococcus faecium E1590]
gi|430624292|gb|ELB60942.1| ribosomal protein S1 [Enterococcus faecium E3548]
Length = 409
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 367
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L DEV VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGAVLDGTVKRLTSFGAFVEVFPGV 312
>gi|422621831|ref|ZP_16690295.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330945249|gb|EGH46912.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
Length = 355
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 184 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 237
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P+ V + ++++
Sbjct: 238 GLKQLGEDPWV-AIKARYPESTRVTARVTNLT 268
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 218 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTARVTNL-TDYGCFAEL 276
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 277 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 330
Query: 132 EDP 134
+P
Sbjct: 331 SNP 333
>gi|302061501|ref|ZP_07253042.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. tomato K40]
Length = 553
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 196 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 249
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 250 GLKQLGEDP 258
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 305 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 364
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 365 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 418
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 419 ERISLGIKQLESDPFSE 435
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 230 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 288
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 289 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 342
Query: 132 EDP 134
+P
Sbjct: 343 SNP 345
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 470 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 512
>gi|227551165|ref|ZP_03981214.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
gi|257887717|ref|ZP_05667370.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
gi|257896211|ref|ZP_05675864.1| ribosomal protein S1 [Enterococcus faecium Com12]
gi|227179727|gb|EEI60699.1| 30S ribosomal protein S1 [Enterococcus faecium TX1330]
gi|257823771|gb|EEV50703.1| ribosomal protein S1 [Enterococcus faecium 1,141,733]
gi|257832776|gb|EEV59197.1| ribosomal protein S1 [Enterococcus faecium Com12]
Length = 417
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 261 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGAVLDGTVKRLTSFGAFVEV-FPG 319
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE P E
Sbjct: 320 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEEKPASE 375
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 169 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 228
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L DEV VKV+ I+ E+ R++LSIK
Sbjct: 229 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDEVNVKVLSINPEQERVSLSIKDT 282
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 283 QPGPWSEIDTKA--PVGAVLDGTVKRLTSFGAFVEVFPGV 320
>gi|398899119|ref|ZP_10648807.1| ribosomal protein S1 [Pseudomonas sp. GM50]
gi|398183210|gb|EJM70704.1| ribosomal protein S1 [Pseudomonas sp. GM50]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|398938569|ref|ZP_10667923.1| ribosomal protein S1 [Pseudomonas sp. GM41(2012)]
gi|407365592|ref|ZP_11112124.1| 30S ribosomal protein S1 [Pseudomonas mandelii JR-1]
gi|398165610|gb|EJM53725.1| ribosomal protein S1 [Pseudomonas sp. GM41(2012)]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|383935676|ref|ZP_09989110.1| small subunit ribosomal protein S1 [Rheinheimera nanhaiensis
E407-8]
gi|383703245|dbj|GAB59201.1| small subunit ribosomal protein S1 [Rheinheimera nanhaiensis
E407-8]
Length = 568
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DREK R++L
Sbjct: 213 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIPVKVLKFDREKQRVSL 266
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 267 GLKQMGEDP 275
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 322 NKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNKGDRVSGKIK 381
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R+ +GDEV V+++D E+
Sbjct: 382 SITDFGIFIGL---DG--GIDGLVHLSDISWNATGEEAVRE-FKKGDEVHAVVLQVDPER 435
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQL+EDP
Sbjct: 436 ERISLGIKQLDEDPF 450
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E +++ K + W +SR GR DYG F+ +
Sbjct: 247 GDEIPVKVLKFDREKQRVSLGLKQMGEDPWAAIASRYPEGAKITGRVTNLTDYGCFVEIE 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 307 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKA 360
Query: 133 DP 134
+P
Sbjct: 361 NP 362
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETL 139
G + VS+++ + I+D +L G+EV +++ +DR+ I+LSIK + EE ++T+
Sbjct: 485 GYIRVSDIARERIEDATTVLKVGEEVEARLMGVDRKNRVISLSIKAKFEAEEKEAMDTI 543
>gi|378949573|ref|YP_005207061.1| protein RpsA [Pseudomonas fluorescens F113]
gi|359759587|gb|AEV61666.1| RpsA [Pseudomonas fluorescens F113]
Length = 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|255994887|ref|ZP_05428022.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
saphenum ATCC 49989]
gi|255993600|gb|EEU03689.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
saphenum ATCC 49989]
Length = 703
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---W----NKYSSRVNVE-DIFVGRDYGAFIHLR 74
G I+VK++ N E K+ K + W +KY + NVE DI ++YGAF+ L
Sbjct: 542 GDTINVKILSLNPEKGKISLGYKQNMPEPWSIIDDKYKAGDNVEGDIVQIKEYGAFLELE 601
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
P L GL+H+SE+S +++I +L+ GD V K+++ID+++ RI+LSIK L + P
Sbjct: 602 -PG----LDGLIHISEISHSRVENINSVLHIGDNVEAKILEIDKDRRRISLSIKALIDPP 656
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 18/131 (13%)
Query: 16 EIAKGLTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR--- 65
E A G + KVI+ ++++ K +FS EK+ + ++NV D G+
Sbjct: 446 EDASEFVGQTMEAKVIRVDQKLGKAIFSPKQLQKEEKNKRLQELWKKLNVGDDIEGKVMR 505
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRI 123
+YGAF+ + DGL +H+SE+SW ++ ++L GD + VK++ ++ EK +I
Sbjct: 506 FTEYGAFVDIGGVDGL------LHISEISWGKLKHPSEVLTVGDTINVKILSLNPEKGKI 559
Query: 124 TLSIKQLEEDP 134
+L KQ +P
Sbjct: 560 SLGYKQNMPEP 570
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G++ SEV+ + Q IRD+ + GDE++ KV+K D I LS +++E LE +
Sbjct: 347 GIIPNSEVALEEGQTIRDLFSVGDEIQAKVLKTDDGDGSILLSRRKMEASVHWAELEDAL 406
Query: 144 PQDGSVISD 152
D +V D
Sbjct: 407 NNDETVKVD 415
>gi|440739723|ref|ZP_20919229.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BRIP34879]
gi|447915934|ref|YP_007396502.1| 30S ribosomal protein S1 [Pseudomonas poae RE*1-1-14]
gi|440379053|gb|ELQ15658.1| 30S ribosomal protein S1 [Pseudomonas fluorescens BRIP34879]
gi|445199797|gb|AGE25006.1| 30S ribosomal protein S1 [Pseudomonas poae RE*1-1-14]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP E ++
Sbjct: 430 RISLGIKQLESDPFSEFVQ 448
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|284007586|emb|CBA73155.1| 30S ribosomal protein S1 [Arsenophonus nasoniae]
Length = 569
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDRDRTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 270 GLKQLGEDP 278
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 344 VLDIDEERRRISLGLKQCKPNPWQQFAETHNKNDRVEGKIKSITDFGIFIGLEGG----- 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 399 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 457
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G +++ + TIE G+
Sbjct: 458 SA--HKKGVIVTGKVVAVDAKGATIELAAGV 486
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE S D ++D +LN GD V K +DR+ ITLS++ +E + + V
Sbjct: 488 GHLRASEASRDRVEDTTQVLNVGDTVEAKYTGVDRKNRIITLSVRAKDEADEKDAIASVN 547
Query: 144 PQDGSVISDSS 154
Q+ S ++++
Sbjct: 548 KQEDSNFANNA 558
>gi|229589170|ref|YP_002871289.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
gi|229361036|emb|CAY47898.1| 30S ribosomal protein S1 [Pseudomonas fluorescens SBW25]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLE 140
I+L IKQLE DP E ++
Sbjct: 431 ISLGIKQLESDPFSEYVQ 448
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIK 522
>gi|406925750|gb|EKD62158.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 368
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 14 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGRDYGAFI 71
+ E K L G +I VKVI+ + + V SEKDA+ ++ S +++I G +
Sbjct: 167 LKESLKALAGKVIKVKVIELDPLKNRFVLSEKDALSTYSDESREKRLQEIAAGTTLEGIV 226
Query: 72 HLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
P G++ + GLVH+SE++W+ + + + G V+V V+ +D + ++ LS+
Sbjct: 227 TGIMPFGVFIDLDGVEGLVHISEIAWEKVNNPSSYFSVGQTVKVMVLGVDDQSKKLALSV 286
Query: 128 KQLEEDPLLETLEKVIP 144
K+L +P ET+EK P
Sbjct: 287 KRLTPNP-WETVEKSYP 302
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF-VGRDYGAFIHLRFPDGLY- 80
G + V V+ +++ KKL S K N + + VE + VG + P G +
Sbjct: 265 GQTVKVMVLGVDDQSKKLALSVKRLTPNPWET---VEKSYPVGTKVKGIVSKVVPFGAFV 321
Query: 81 ----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
L GL+HVSE + L EGDEV VI++D ++ LS +
Sbjct: 322 TIEKGLDGLIHVSEAAGPL--------KEGDEVEAIVIQVDGTNQKLALSTR 365
>gi|398871479|ref|ZP_10626793.1| ribosomal protein S1 [Pseudomonas sp. GM74]
gi|398890638|ref|ZP_10644193.1| ribosomal protein S1 [Pseudomonas sp. GM55]
gi|398917344|ref|ZP_10658118.1| ribosomal protein S1 [Pseudomonas sp. GM49]
gi|398926474|ref|ZP_10662470.1| ribosomal protein S1 [Pseudomonas sp. GM48]
gi|398952118|ref|ZP_10674580.1| ribosomal protein S1 [Pseudomonas sp. GM33]
gi|426408276|ref|YP_007028375.1| 30S ribosomal protein S1 [Pseudomonas sp. UW4]
gi|398155615|gb|EJM44054.1| ribosomal protein S1 [Pseudomonas sp. GM33]
gi|398170741|gb|EJM58669.1| ribosomal protein S1 [Pseudomonas sp. GM48]
gi|398173038|gb|EJM60884.1| ribosomal protein S1 [Pseudomonas sp. GM49]
gi|398187904|gb|EJM75228.1| ribosomal protein S1 [Pseudomonas sp. GM55]
gi|398206035|gb|EJM92808.1| ribosomal protein S1 [Pseudomonas sp. GM74]
gi|426266493|gb|AFY18570.1| 30S ribosomal protein S1 [Pseudomonas sp. UW4]
Length = 563
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPERE 429
Query: 122 RITLSIKQLEEDPLLETLEK 141
RI+L IKQLE DP E +++
Sbjct: 430 RISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|399002592|ref|ZP_10705275.1| ribosomal protein S1 [Pseudomonas sp. GM18]
gi|398124507|gb|EJM14015.1| ribosomal protein S1 [Pseudomonas sp. GM18]
Length = 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|330808293|ref|YP_004352755.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423696083|ref|ZP_17670573.1| ribosomal protein S1 [Pseudomonas fluorescens Q8r1-96]
gi|327376401|gb|AEA67751.1| 30S ribosomal protein S1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388002876|gb|EIK64203.1| ribosomal protein S1 [Pseudomonas fluorescens Q8r1-96]
Length = 562
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|395651191|ref|ZP_10439041.1| 30S ribosomal protein S1 [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETL 139
+ SE+S D ++D R++L EG EV K+I +DR+ I LSIK ++EE +++L
Sbjct: 480 LKASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEIEEKEAIQSL 536
>gi|410092246|ref|ZP_11288778.1| 30S ribosomal protein S1 [Pseudomonas viridiflava UASWS0038]
gi|409760411|gb|EKN45559.1| 30S ribosomal protein S1 [Pseudomonas viridiflava UASWS0038]
Length = 561
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 426
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 427 ERISLGIKQLESDPFSE 443
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 238 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 297 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 350
Query: 132 EDP 134
+P
Sbjct: 351 SNP 353
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|393761925|ref|ZP_10350556.1| 30S ribosomal protein S1 [Alishewanella agri BL06]
gi|392607138|gb|EIW90018.1| 30S ribosomal protein S1 [Alishewanella agri BL06]
Length = 559
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DREK R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIPVKVLKFDREKQRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNKGDRVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDEV V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQL+EDP + L + G+++ S + T+
Sbjct: 428 RISLGIKQLDEDPFNDYLAD--NKKGAIVKGEVSAVDAKGATV 468
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E +++ K + W +SR GR DYG F+ +
Sbjct: 238 GDEIPVKVLKFDREKQRVSLGLKQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|255021289|ref|ZP_05293338.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
gi|340782136|ref|YP_004748743.1| 30S ribosomal protein S1p [Acidithiobacillus caldus SM-1]
gi|254969300|gb|EET26813.1| SSU ribosomal protein S1p [Acidithiobacillus caldus ATCC 51756]
gi|340556289|gb|AEK58043.1| SSU ribosomal protein S1p [Acidithiobacillus caldus SM-1]
Length = 573
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVG----------RDYG 68
L G + +K+I+ + + +V S + V + S+ +E I G DYG
Sbjct: 156 LEGKDLEMKIIKLDRKRNNVVVSRRAVVEQEQSAERGALLESIQEGAILEGVVKNLTDYG 215
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL H+T ++ W ++ ++++ GDEVRV V+K DRE+ RI+L +K
Sbjct: 216 AFIDLGGIDGLLHIT------DMGWRRVKHPSEVVSAGDEVRVMVLKFDRERGRISLGMK 269
Query: 129 QLEEDP 134
QL EDP
Sbjct: 270 QLGEDP 275
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 22/138 (15%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
P K++H G + V V+ +EE +++ K + W +++ D G+
Sbjct: 327 PAKALH------LGQEVEVMVLDIDEERRRISLGIKQCLPNPWEEFAQNYQKGDRVSGQI 380
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDRE 119
D+G FI L + GL+H+S++SWD + +RD +GDE+ V+ ID E
Sbjct: 381 KSITDFGVFIGLE-----GGIDGLIHLSDLSWDRPGEEAVRD-FKKGDELEAVVLSIDPE 434
Query: 120 KSRITLSIKQLEEDPLLE 137
+ RI+L IKQ+E DP ++
Sbjct: 435 RERISLGIKQMETDPFIQ 452
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + + L+ G EV V V+ ID E+ RI+
Sbjct: 298 DYGAFVEIE-----EGVEGLVHVSEIDWTNKNLNPAKALHLGQEVEVMVLDIDEERRRIS 352
Query: 125 LSIKQLEEDP 134
L IKQ +P
Sbjct: 353 LGIKQCLPNP 362
>gi|422641147|ref|ZP_16704571.1| 30S ribosomal protein S1, partial [Pseudomonas syringae Cit 7]
gi|330953535|gb|EGH53795.1| 30S ribosomal protein S1 [Pseudomonas syringae Cit 7]
Length = 494
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 137 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 190
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 191 GLKQLGEDP 199
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 246 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 305
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+
Sbjct: 306 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERE 360
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 361 RISLGIKQLESDPFSE 376
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 171 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 229
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 230 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 283
Query: 132 EDP 134
+P
Sbjct: 284 SNP 286
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 411 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 453
>gi|21243033|ref|NP_642615.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
306]
gi|289665787|ref|ZP_06487368.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289671206|ref|ZP_06492281.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. musacearum
NCPPB 4381]
gi|294624737|ref|ZP_06703403.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294664331|ref|ZP_06729696.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325925941|ref|ZP_08187309.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
gi|346725198|ref|YP_004851867.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citrumelo F1]
gi|381173193|ref|ZP_09882298.1| ribosomal protein S1 [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|390989629|ref|ZP_10259925.1| ribosomal protein S1 [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|418516565|ref|ZP_13082738.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418522541|ref|ZP_13088575.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|21108543|gb|AAM37151.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citri str.
306]
gi|292600971|gb|EFF45042.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605897|gb|EFF49183.1| 30S ribosomal protein S1 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325543664|gb|EGD15079.1| SSU ribosomal protein S1P [Xanthomonas perforans 91-118]
gi|346649945|gb|AEO42569.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. citrumelo F1]
gi|372555690|emb|CCF66900.1| ribosomal protein S1 [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|380686354|emb|CCG38785.1| ribosomal protein S1 [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|410701013|gb|EKQ59546.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706844|gb|EKQ65301.1| 30S ribosomal protein S1 [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 561
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|357448761|ref|XP_003594656.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
gi|355483704|gb|AES64907.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
Length = 407
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 20/159 (12%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ ++E +LV S + AV ++ + + G + YGAFI +
Sbjct: 223 VPLKFVEVDQEQARLVLSHRKAVAG-IQGQLGIGSVVTGTVQSLKPYGAFIDIG-----G 276
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 277 GISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 336
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 337 PTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 375
>gi|78048052|ref|YP_364227.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036482|emb|CAJ24173.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 561
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|406838677|ref|ZP_11098271.1| 30S ribosomal protein S1 [Lactobacillus vini DSM 20605]
Length = 405
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K++V +E++A + +++ D+ G+ ++GAF+ L DGL VHVSE++
Sbjct: 180 KEIVKAEREAKKAETLAKLAAGDVVEGKVARLTNFGAFVDLGGVDGL------VHVSEIA 233
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ + D+L G EV+VKV+ +D +K R++LSIKQ P + EK+ +G VI
Sbjct: 234 FERVDKPSDVLKVGQEVKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEKI--AEGDVIEG 291
Query: 153 SSSMSSSNSNTIEPLPGL 170
+ +S +E LPG+
Sbjct: 292 TVKRLTSFGAFVEVLPGV 309
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 17/149 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + + +++ S K + W++ S ++ D+ G +GAF+ +
Sbjct: 247 GQEVKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEKIAEGDVIEGTVKRLTSFGAFVEV- 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S I ++L G++++VKV+ + E+ R+ LSIK LEE P
Sbjct: 306 ----LPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSIKALEEKP 361
Query: 135 LLETLEKVIPQDGSVISDSSSMSSSNSNT 163
+ +K+ + +DSS ++ +T
Sbjct: 362 VAGETKKLAAKK----TDSSVANAPEEST 386
>gi|398868645|ref|ZP_10624041.1| ribosomal protein S1 [Pseudomonas sp. GM78]
gi|398232858|gb|EJN18810.1| ribosomal protein S1 [Pseudomonas sp. GM78]
Length = 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 259
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 260 GLKQLGEDP 268
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 316 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 375
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 376 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 430
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+L IKQLE DP E +++
Sbjct: 431 ISLGIKQLESDPFSEYVQE 449
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 240 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 298
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 299 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 352
Query: 132 EDP 134
+P
Sbjct: 353 SNP 355
Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+EV K+I +DR+ I LSIK
Sbjct: 480 LKASEISRDRVEDARNVLKEGEEVEAKIISVDRKSRVIQLSIK 522
>gi|422616824|ref|ZP_16685529.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
japonica str. M301072]
gi|330897209|gb|EGH28628.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
japonica str. M301072]
Length = 467
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 110 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 163
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 164 GLKQLGEDP 172
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 219 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 278
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 279 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 332
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 333 ERISLGIKQLESDPFSE 349
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 144 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 202
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 203 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 256
Query: 132 EDP 134
+P
Sbjct: 257 SNP 259
Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 384 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 426
>gi|325922079|ref|ZP_08183873.1| ribosomal protein S1 [Xanthomonas gardneri ATCC 19865]
gi|325547416|gb|EGD18476.1| ribosomal protein S1 [Xanthomonas gardneri ATCC 19865]
Length = 358
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 1 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 54
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 55 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 97
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 122 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 180
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 181 --DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQD 236
Query: 134 PLLETL 139
P + +
Sbjct: 237 PFGQYM 242
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 35 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 94
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 95 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 149
Query: 134 P 134
P
Sbjct: 150 P 150
>gi|154359354|gb|ABS79699.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359356|gb|ABS79700.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 186
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE KLV S + AV + +++ + + +G + YGAFI +
Sbjct: 79 IPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDI------G 131
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DR++ R++LS K+LE P
Sbjct: 132 GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 185
>gi|422667950|ref|ZP_16727810.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330980287|gb|EGH78422.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 387
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 30 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 83
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 84 GLKQLGEDP 92
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 140 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 199
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 200 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 254
Query: 123 ITLSIKQLEEDPLLE 137
I+L IKQL DP E
Sbjct: 255 ISLGIKQLASDPFSE 269
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 64 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 122
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 123 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 176
Query: 132 EDP 134
+P
Sbjct: 177 SNP 179
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 304 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 346
>gi|422404267|ref|ZP_16481321.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330876614|gb|EGH10763.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. glycinea str.
race 4]
Length = 386
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 29 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 82
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 83 GLKQLGEDP 91
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 139 KNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIKS 198
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+ R
Sbjct: 199 ITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELDTVILSVDPERER 253
Query: 123 ITLSIKQLEEDPLLE 137
I+L IKQLE DP E
Sbjct: 254 ISLGIKQLESDPFSE 268
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 63 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 121
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 122 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 175
Query: 132 EDP 134
+P
Sbjct: 176 SNP 178
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 303 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 345
>gi|320160398|ref|YP_004173622.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
gi|319994251|dbj|BAJ63022.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
Length = 332
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 17/131 (12%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR----------DYGAFI 71
G I+S+KVI+ + +++VFSE+ A+ + R + G D+GAF+
Sbjct: 132 VGRILSLKVIECEMQAERIVFSERAALAGEGKRRQLFSTLRPGEIVNGTVTNVTDFGAFV 191
Query: 72 HLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
L L GL+HVSE+SW +Q DIL G VR V+ + E R+ LS+K+L
Sbjct: 192 DLG------GLEGLIHVSELSWGRVQHPTDILQVGVPVRALVLSVSAENGRVALSLKRLC 245
Query: 132 EDPLLETLEKV 142
+P ETL ++
Sbjct: 246 PNP-WETLPQI 255
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+GAF L+ +G+ GL+H+S +S D +DI + G +V+V+++ +D E+ R+ L
Sbjct: 272 FGAFARLK--EGV---EGLIHISTMSLPDGEKDIEKFMKIGQKVQVRILHLDAERRRLGL 326
Query: 126 SIKQLE 131
+ Q+E
Sbjct: 327 GLVQIE 332
>gi|153871353|ref|ZP_02000546.1| 30S ribosomal protein S1 [Beggiatoa sp. PS]
gi|152072182|gb|EDN69455.1| 30S ribosomal protein S1 [Beggiatoa sp. PS]
Length = 562
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDEV VKV+K DRE+ R++L
Sbjct: 206 DYGAFVDLGGVDGLLHIT------DMAWRRVKHPSEVVNVGDEVEVKVLKFDRERIRVSL 259
Query: 126 SIKQLEEDPLLE 137
+KQL EDP L+
Sbjct: 260 GLKQLGEDPWLD 271
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-- 65
K++H G + V V+ +EE +++ K W ++++ N D VG
Sbjct: 315 NKNVHPSKIVQVGDEVEVMVLDIDEERRRISLGIKQCHVNPWEEFATTYNKNDKVVGHIK 374
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREK 120
D+G FI L P ++ GLVH+S++SW++ +I R+ + DEV V+ +D E+
Sbjct: 375 SITDFGIFIEL--PG---NIDGLVHLSDISWNVAGEIAVRN-YKKADEVEAVVLAVDAER 428
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQL++DP
Sbjct: 429 ERISLGIKQLDKDPF 443
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W +++ I+ GDEV V V+ ID E+ RI
Sbjct: 291 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNVHPSKIVQVGDEVEVMVLDIDEERRRI 344
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 345 SLGIKQCHVNP 355
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
G + E++++ + D R L E +E+ KVI +DR+K I LSIK
Sbjct: 478 GFLRAQEIAYERVDDARRFLKETEEIEAKVIGVDRKKRMINLSIK 522
>gi|380512228|ref|ZP_09855635.1| 30S ribosomal protein S1 [Xanthomonas sacchari NCPPB 4393]
Length = 559
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDIVRNFKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|422630289|ref|ZP_16695488.1| 30S ribosomal protein S1, partial [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330939639|gb|EGH42945.1| 30S ribosomal protein S1 [Pseudomonas syringae pv. pisi str. 1704B]
Length = 456
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 99 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKYDRERNRVSL 152
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 153 GLKQLGEDP 161
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 208 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKISGTIK 267
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + + +R +GDE+ ++ +D E+
Sbjct: 268 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRR-FKKGDELDTVILSVDPER 321
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 322 ERISLGIKQLESDPFSE 338
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VKV++ + E ++ K A+ +Y S+RV + DYG F L
Sbjct: 133 GDEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTAR-VTNLTDYGCFAEL 191
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI+L IKQ +
Sbjct: 192 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCK 245
Query: 132 EDP 134
+P
Sbjct: 246 SNP 248
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 373 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 415
>gi|88798958|ref|ZP_01114539.1| 30S ribosomal protein S1 [Reinekea blandensis MED297]
gi|88778185|gb|EAR09379.1| 30S ribosomal protein S1 [Reinekea sp. MED297]
Length = 560
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVQVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP ++ ++ P++ V + ++++
Sbjct: 258 GLKQLGEDPWVD-IKARYPEEAKVTAKVTNLT 288
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G I V V+ +EE +++ K V W +++R N D G+
Sbjct: 313 NKNIHPSKVVQVGDEIEVMVLDIDEERRRISLGIKQTVVNPWEDFANRYNKSDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + +R +GDE+ ++ ID E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNESGEEAVRK-YKKGDELETTILSIDPER 426
Query: 121 SRITLSIKQLEEDPLLE 137
RI+L IKQL+ DP E
Sbjct: 427 ERISLGIKQLDMDPFAE 443
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ G++ SE+S D ++D R++LNEG+EV K++ IDR+ I+LSIK
Sbjct: 474 IEGVLKASEISRDKVEDARNVLNEGEEVEAKIVSIDRKNRVISLSIK 520
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDE+ V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEIEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQTVVNP 353
>gi|330445635|ref|ZP_08309287.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489826|dbj|GAA03784.1| ribosomal protein S1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 556
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S ++ D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEMQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVSGEEAVRD-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+EEDP + + G++++ + + + TIE G+
Sbjct: 427 ERISLGVKQIEEDPFNSFVAD--TKKGALVTGTVTAVDAKGATIELAEGV 474
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
Length = 400
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +EE +LV S + A+ + +++ + + +G + YGAFI +
Sbjct: 224 LPLKYVEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI------G 276
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 277 GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
>gi|343496480|ref|ZP_08734576.1| 30S ribosomal protein S1 [Vibrio nigripulchritudo ATCC 27043]
gi|342821093|gb|EGU55887.1| 30S ribosomal protein S1 [Vibrio nigripulchritudo ATCC 27043]
Length = 556
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + G++++ + + + TIE + G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAD--NKKGALVNGTVTAVDAKGATIELVEGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SEVS D ++D IL+ GD V K +DR+ I LSIK + EE + +L
Sbjct: 476 GYIRASEVSRDRVEDASLILSVGDSVEAKFTGVDRKNRVINLSIKAKDEAEEQEAMASLN 535
Query: 141 K 141
K
Sbjct: 536 K 536
>gi|329929826|ref|ZP_08283502.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
gi|328935804|gb|EGG32265.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
Length = 405
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-----WNKYSSRVNVED--IFVGR-----DYGAF 70
G + VKV + + E K++ S+KD + NK ++D + G +GAF
Sbjct: 156 GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVLEGTVQRLTQFGAF 215
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VHVSE++W + D+L+EGD+VRVKV+K+D EK +I+LSIK
Sbjct: 216 VDVGGVDGL------VHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAA 269
Query: 131 EEDP 134
P
Sbjct: 270 APGP 273
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E K+ S K A W + N DI G +GAF+ L
Sbjct: 245 GDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVEL- 303
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+S++S I +++L EG EV+VKV+ I+ + RI+LSIK+ EE P
Sbjct: 304 ----APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSIKETEEAP 359
>gi|194365424|ref|YP_002028034.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
gi|194348228|gb|ACF51351.1| ribosomal protein S1 [Stenotrophomonas maltophilia R551-3]
Length = 561
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKGDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW +DI +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWATTGEDIVRNFKKGDTLDAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|336315849|ref|ZP_08570755.1| ribosomal protein S1 [Rheinheimera sp. A13L]
gi|335879839|gb|EGM77732.1| ribosomal protein S1 [Rheinheimera sp. A13L]
Length = 558
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DREK R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIPVKVLKFDREKQRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNKGDRVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDEV V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL+EDP
Sbjct: 428 RISLGIKQLDEDPF 441
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E +++ K + W +SR GR DYG F+ +
Sbjct: 238 GDEIPVKVLKFDREKQRVSLGLKQMGEDPWAAIASRYPEGARITGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDSVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G V VS+++ + I+D +L G+EV +++ +DR+ I+LSIK + EE ++T++
Sbjct: 476 GYVRVSDIARERIEDATTVLKVGEEVEARLMGVDRKNRVISLSIKAKFEAEEKEAMDTIK 535
Query: 141 K 141
K
Sbjct: 536 K 536
>gi|325915995|ref|ZP_08178288.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
gi|325537805|gb|EGD09508.1| SSU ribosomal protein S1P [Xanthomonas vesicatoria ATCC 35937]
Length = 562
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|372269727|ref|ZP_09505775.1| 30S ribosomal protein S1 [Marinobacterium stanieri S30]
Length = 558
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W ++ ++LN GDE+ VKV+K D E+ R++L
Sbjct: 204 DYGAFIDLGGIDGLLHIT------DIAWKRVKHPSEVLNVGDEIDVKVLKYDAERKRVSL 257
Query: 126 SIKQLEEDP 134
+KQL+EDP
Sbjct: 258 GLKQLQEDP 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V ++ +++ +++ K W +++ D GR
Sbjct: 314 KNIHPSKVVQVGDEVEVMILDIDQQRRRISLGMKQCQTNPWEAFATTHAKGDTVSGRVRS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G F+ L DG + GLVH+S++SWDL + ++D N+GDEV V+ +D E+
Sbjct: 374 ITDFGVFVGL---DG--GIDGLVHLSDLSWDLPGEEAMKD-YNKGDEVEALVLSVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
RI L IKQL DP T+ GS ++ + + + T+E G+ + +
Sbjct: 428 RIALGIKQLNSDPF--TMFASDHPKGSSVTGTLTEVTPRQATVELAEGVEGVLK 479
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E K++ K + W K V + DYG F +
Sbjct: 238 GDEIDVKVLKYDAERKRVSLGLKQLQEDPWTKLIGEYTVGTRVKAKVTNLTDYGCFAEIS 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V ++ ID+++ RI+L +KQ +
Sbjct: 298 -----TGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMILDIDQQRRRISLGMKQCQT 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G++ V+E+S D +D+ L GD + ++ +DR I LS++Q+E + + ++ V
Sbjct: 476 GVLKVAELSQDHTEDLTSELKVGDSLEASILSVDRRNRTINLSVRQMEREQTKQAMQSVR 535
Query: 144 PQD 146
QD
Sbjct: 536 EQD 538
>gi|345863468|ref|ZP_08815679.1| 30S ribosomal protein S1 [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125546|gb|EGW55415.1| 30S ribosomal protein S1 [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 558
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYG 68
L G + KVI+ + +V S + V +YS+ +E++ G+ DYG
Sbjct: 147 LEGKDLEFKVIKLDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQELKGVVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ D++ GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGIDGLLHIT------DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQ 145
Q+ +DP + L + P+
Sbjct: 261 QMGDDPWV-ALARRYPE 276
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W++++ N D G+
Sbjct: 313 NKNIHPSKVVTLGDEVEVMVLDIDEERRRVSLGIKQCKSNPWDEFAVTHNKNDHVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SWD +D +GDEV V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWDDAGEDAIRNFKKGDEVETVVLSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL +DP
Sbjct: 428 RISLGIKQLAKDPF 441
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K D W + R G+ DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERNRVSLGLKQMGDDPWVALARRYPESTRLFGKVTNIADYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R++L IKQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVTLGDEVEVMVLDIDEERRRVSLGIKQCKS 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SE+S D ++D R +L EG E+ K I +DR+ I+LSI
Sbjct: 465 GAVIDL--ADGV---EGYLRASELSRDRVEDARTLLKEGQEIEAKFIGVDRKNRTISLSI 519
>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
Length = 405
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-----WNKYSSRVNVED--IFVGR-----DYGAF 70
G + VKV + + E K++ S+KD + NK ++D + G +GAF
Sbjct: 156 GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVLEGTVQRLTQFGAF 215
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VHVSE++W + D+L+EGD+VRVKV+K+D EK +I+LSIK
Sbjct: 216 VDVGGVDGL------VHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAA 269
Query: 131 EEDP 134
P
Sbjct: 270 APGP 273
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E K+ S K A W + N DI G +GAF+ L
Sbjct: 245 GDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVEL- 303
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+S++S I +++L EG EV+VKV+ I+ + RI+LSIK+ EE P
Sbjct: 304 ----APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSIKETEEAP 359
Score = 35.4 bits (80), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK----DAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDG 78
G + KV+ N++ + LV S++ + W++ +D+F + G
Sbjct: 73 GQEVECKVVSINDDKESLVLSKRAIDTENSWDELEKHFADQDVF-----EVTVADVVKGG 127
Query: 79 LYH---LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
L G + S V ++D D +G +RVKV ++DRE +++ LS K + E+
Sbjct: 128 LVADVGARGFIPASMVERHFVEDFSDY--KGRTLRVKVKELDRENNKVILSQKDVLEEEF 185
Query: 136 LETLEKVIP--QDGSVI 150
+KV+ QDG V+
Sbjct: 186 EANKQKVMSELQDGQVL 202
>gi|384419610|ref|YP_005628970.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462523|gb|AEQ96802.1| ribosomal protein S1 [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 561
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|21231633|ref|NP_637550.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768245|ref|YP_243007.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991381|ref|YP_001903391.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. B100]
gi|384428096|ref|YP_005637455.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. raphani 756C]
gi|21113326|gb|AAM41474.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573577|gb|AAY48987.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris
str. 8004]
gi|167733141|emb|CAP51339.1| 30S ribosomal protein S1 [Xanthomonas campestris pv. campestris]
gi|341937198|gb|AEL07337.1| ribosomal protein S1 [Xanthomonas campestris pv. raphani 756C]
Length = 559
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|384915508|ref|ZP_10015724.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
gi|384527058|emb|CCG91595.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
Length = 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 23/147 (15%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN-------KYSSRVNVEDIF 62
P K++ E G+ ++ K+++ +EE K +V S ++ V ++ +V+V D+
Sbjct: 130 PPKNLKE----YEGATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEKVHVGDLV 185
Query: 63 VG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117
G D+GAFI L DG+ GL+H++++SW I +IL G E+ V VI +D
Sbjct: 186 KGVVKNVTDFGAFIDL---DGI---DGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVD 239
Query: 118 REKSRITLSIKQLEEDPLLETLEKVIP 144
REK R++L +KQ +P E +E+ P
Sbjct: 240 REKERVSLGLKQKTPNP-WENIEEKYP 265
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 15/127 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I KV++ ++ +K++ K W + + V +I G+ +GAFI L
Sbjct: 402 GEEIEAKVLEIDKTNQKILLGIKQLTEDPWKEIEKKYKVGEIVSGKVSKIASFGAFIQL- 460
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+S++S D + ++D+L G EV ++IKID+E+ RI LSIK L P
Sbjct: 461 ----ADEIDGLVHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIKALHYTP 516
Query: 135 LLETLEK 141
E LEK
Sbjct: 517 --EQLEK 521
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+ N+ +KL S K W+K S I G+ YGA+I L
Sbjct: 315 GQEVEAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGKVKNFSAYGAYIELE 374
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L G +HV+++SW I ++L +G+E+ KV++ID+ +I L IKQL ED
Sbjct: 375 -----NALDGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTED 429
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSS 159
P E +K + G ++S S +S
Sbjct: 430 PWKEIEKKY--KVGEIVSGKVSKIAS 453
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI L + GLVH+SE+SW I ++L+ G EV V+ I++ + +++L
Sbjct: 280 YGAFIELE-----PGIEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSL 334
Query: 126 SIKQLEEDP 134
S+K LE +P
Sbjct: 335 SLKALEVNP 343
>gi|407789375|ref|ZP_11136476.1| 30S ribosomal protein S1 [Gallaecimonas xiamenensis 3-C-1]
gi|407206733|gb|EKE76683.1| 30S ribosomal protein S1 [Gallaecimonas xiamenensis 3-C-1]
Length = 557
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL DP + E+
Sbjct: 258 GLKQLGADPWVSIAER 273
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +++ R N D G+
Sbjct: 313 NKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGLKQCKQNPWEEFAGRFNKGDQVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ D +R+ +G+E+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNATGDEAVRE-YKKGEEITAVVLQVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQLE DP
Sbjct: 427 ERISLGVKQLEADPF 441
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGADPWVSIAERYPEGHKLKGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L +KQ ++
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGLKQCKQ 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + S++S + I+D +L G+EV K + +DR+ I+LSI+ +E + ++ +
Sbjct: 476 GYLRASDISRERIEDASTVLKAGEEVEAKFMGVDRKNRTISLSIRAKDEADERDAIDHLN 535
Query: 144 PQDGSVISDSSS 155
Q+ +VI ++ +
Sbjct: 536 NQEDAVIPNAMA 547
>gi|88608293|ref|YP_506295.1| 30S ribosomal protein S1 [Neorickettsia sennetsu str. Miyayama]
gi|88600462|gb|ABD45930.1| ribosomal protein S1 [Neorickettsia sennetsu str. Miyayama]
Length = 553
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYG 68
L G + ++++ + + K+ S + +A ++Y S + DI GR YG
Sbjct: 171 LVGVKLKFRILKMDPKTGKIFVSRRKALGAVHEAARSEYISTIKEGDIIDGRVKSIASYG 230
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+ + D + + GL++V+++SW + I + G EVRVKVI +D EK RI+L +K
Sbjct: 231 VFVQIHESDKVGVVDGLLYVNDISWARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVK 290
Query: 129 QLEEDPLLETLEKVIPQD 146
QL E+P + +K P +
Sbjct: 291 QLTENPWKDVSKKYTPGN 308
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 72
L S ++V ++ +EE K+ S K D W K+ + + + D G +
Sbjct: 349 LPNSKVNVMLLSVDEEGHKIALSVKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIVLT 408
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE---GDEVRVKVIKIDREKSRITLSIKQ 129
L P G ++ G V ++ +SW Q+ R L GDEV K++ ++ ++ R+ +IK
Sbjct: 409 LLDP-GYSYVRGYVRLANISWS--QNPRKELKRFTIGDEVEAKLVHVNPDRGRVMFNIKY 465
Query: 130 LEEDPLLETLEKVIPQD 146
+E DP E + +V +D
Sbjct: 466 VEYDPFEEFISRVNEKD 482
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKVI + E ++ K W S + +++ G DYG F+ R
Sbjct: 268 GQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYTPGNVYPGVVTSVEDYGIFV--R 325
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G+ GLVH E+SW + + +V V ++ +D E +I LS+KQ ++P
Sbjct: 326 LEEGV---EGLVHSGEISW---TREKPLFLPNSKVNVMLLSVDEEGHKIALSVKQCSDNP 379
Query: 135 LLETLE 140
+ L+
Sbjct: 380 WKKFLD 385
>gi|399911179|ref|ZP_10779493.1| 30S ribosomal protein S1 [Halomonas sp. KM-1]
Length = 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP + E+
Sbjct: 258 GLKQLGEDPWVSITER 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V ++ +EE +++ K W ++++ N D G
Sbjct: 314 KNIHPSKVVNIGDEVDVMILDIDEERRRISLGIKQCTANPWETFNAQYNKGDRVSGTIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L + GLVH+S++SW + ++ +GDE ++ ID E+ R
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDLSWSETGEEAVRRFKKGDEAEAVILSIDPERER 428
Query: 123 ITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
I+L IKQL+ DP+ E L + GS++S
Sbjct: 429 ISLGIKQLDSDPVAEYL--AVNDKGSIVS 455
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R + R DYG F L
Sbjct: 238 GDEINVKVLKFDRERNRVSLGLKQLGEDPWVSITERYPEGTVVQARVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V ++ ID E+ RI+L IKQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNIGDEVDVMILDIDEERRRISLGIKQCTA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ ++ SE+S D ++D R++L+EGD V +++ +DR+ I LSIK ++D + L+K
Sbjct: 474 VVAVLKASEISADRVEDARNVLSEGDTVEARIVNVDRKNRAINLSIKAKDQDDTRQNLKK 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 LREQE 538
>gi|58581803|ref|YP_200819.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623707|ref|YP_451079.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188576640|ref|YP_001913569.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58426397|gb|AAW75434.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367647|dbj|BAE68805.1| 30S ribosomal protein S1 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188521092|gb|ACD59037.1| ribosomal protein S1 [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 561
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|402836938|ref|ZP_10885469.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Mogibacterium
sp. CM50]
gi|402269954|gb|EJU19223.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Mogibacterium
sp. CM50]
Length = 656
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 18/131 (13%)
Query: 16 EIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-------NVEDIFVGR--- 65
E A G + V+VI+ + + + VFS K + ++ ++ NV DI G+
Sbjct: 436 ENADEFLGQTVDVEVIKVDNKRNRAVFSRKAVLVDEKRKQIAEIWANLNVGDIVEGKVMR 495
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + DGL +H+SE+SW ++ +++LN GD + VK++ ++ EK +I
Sbjct: 496 FTDYGAFVDIGGVDGL------LHISEISWGKLKHPKEVLNIGDIINVKILALNEEKGKI 549
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 550 SLGLKQTQPEP 560
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 13/116 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G II+VK++ NEE K+ K W+ S+ V + G+ DYGAF+ L
Sbjct: 532 GDIINVKILALNEEKGKISLGLKQTQPEPWSLVGSKYEVGQVIEGKVVQIKDYGAFVELE 591
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
L GLVH+SE++ ++++ D L G + K+++ID ++ RI+LSIK L
Sbjct: 592 -----AGLDGLVHISEIANRRVENVSDELELGKIITAKIMEIDVDRKRISLSIKAL 642
Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
G++ SEV+ + Q + D+ EGDE++ KV+K D + I LS K+LE
Sbjct: 337 GILQKSEVTLEPGQTLVDLFKEGDEIQAKVMKSDDGEGGILLSKKRLE 384
>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
Length = 411
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNVEDIFVGRDYGAFIHLRFPDGLY 80
G + VK+ + + E K++ S K+ + +Y + R +E + G+ + P G +
Sbjct: 168 GQTLRVKIKELDRETNKVILSAKEVLEEEYEANKRRIMESLEPGQIIEGTVQRLTPFGAF 227
Query: 81 ----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GLVHVSE++W+ + RD+++EG +V+VKV+K+D E +I+LSIK + P
Sbjct: 228 VDIGGIDGLVHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIKAAQPGPWE 287
Query: 137 ETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+K +G +++ + S +E PG+
Sbjct: 288 LAADKF--HNGDIVTGTVKRIVSFGAFVEVAPGV 319
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E K+ S K A W + + + DI G +GAF+ +
Sbjct: 257 GQQVKVKVLKVDPEAGKISLSIKAAQPGPWELAADKFHNGDIVTGTVKRIVSFGAFVEV- 315
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+S+++ I ++L EG EV+ KV+ + + RI+LSIK+ EE P
Sbjct: 316 ----APGVEGLVHISQIAHRHIATPHEVLKEGQEVKAKVLDFNPAEKRISLSIKETEEAP 371
>gi|296112015|ref|YP_003622397.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
gi|339490710|ref|YP_004705215.1| 30S ribosomal protein S1 [Leuconostoc sp. C2]
gi|295833547|gb|ADG41428.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
gi|338852382|gb|AEJ30592.1| ribosomal protein S1 [Leuconostoc sp. C2]
Length = 395
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 20/157 (12%)
Query: 26 ISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
I +VI+ + +L+ S E+ A + S++ V ++ G D+GAF+ L
Sbjct: 158 IKAQVIEIDPANARLILSRKAVAAQERAAQLAEVFSKLTVGEVVEGTVARLTDFGAFVDL 217
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+LSIK +
Sbjct: 218 GGVDGL------VHVSEISHDRVKNPADVLTKGDKVNVKILALDTEKGRISLSIKATQRG 271
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P E +++ G V+ + +E LPG+
Sbjct: 272 PWDEAADQIAA--GDVLEGTVKRVKDFGAFVEILPGI 306
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 17/135 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VK++ + E ++ S K W++ + ++ D+ G +D+GAF+ +
Sbjct: 244 GDKVNVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGDVLEGTVKRVKDFGAFVEI- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 303 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 358
Query: 135 LLETLEKVIPQDGSV 149
E K DGS
Sbjct: 359 EREDRRK----DGSA 369
>gi|358248430|ref|NP_001239880.1| uncharacterized protein LOC100812847 [Glycine max]
gi|255635364|gb|ACU18035.1| unknown [Glycine max]
Length = 412
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ +EE +LV S + AV +++ + + G + YGAFI +
Sbjct: 230 LPLKFVEVDEEQSRLVLSNRKAVAGN-QAQLGIGSVVTGSVQSLKPYGAFIDIG------ 282
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 283 GINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 342
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 343 PKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 381
>gi|37679484|ref|NP_934093.1| 30S ribosomal protein S1 [Vibrio vulnificus YJ016]
gi|320156766|ref|YP_004189145.1| 30S ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
gi|37198228|dbj|BAC94064.1| ribosomal protein S1 [Vibrio vulnificus YJ016]
gi|319932078|gb|ADV86942.1| SSU ribosomal protein S1p [Vibrio vulnificus MO6-24/O]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 427 ERISLGIKQMENDPFNAYVAD--NKKGALVNGTVTAVDAKGATIELEDGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDATLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 KQLEEDPLLETLEKVIPQD----GSVISDS 153
K +E E + + D G+ ++D+
Sbjct: 520 KAKDEAEEQEAMASINKADEAAFGNAMADA 549
>gi|400405107|ref|YP_006587966.1| 30S ribosomal protein S1 [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363470|gb|AFP84538.1| ribosomal protein S1 [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 19/149 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMKVQGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+ GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVTVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMS 157
QL EDP + + K P+ + ++++
Sbjct: 261 QLGEDPWI-AIAKRYPEGAHLTGRVTNLT 288
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 16/150 (10%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W ++++ + D G+ D+G FI L DG
Sbjct: 332 VLDIDEERRRISLGLKQCKANPWQQFANTHHKGDRVEGKIKSITDFGIFIGL---DG--G 386
Query: 82 LTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ GLVH+S++SW L+ ++ +GDE+ V+++D ++ RI+L +KQ+ EDP L
Sbjct: 387 IDGLVHLSDISWHLVGEEAVRAYKKGDEIEAVVLQVDADRERISLGVKQMAEDPFNTYL- 445
Query: 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ + GS+++ + T+E G+
Sbjct: 446 -ALNKKGSMVTGKVTAVDPKGVTVELAGGV 474
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
G + SE S D ++D ILN GD+V K +DR+ ++LS++ + ET+ V
Sbjct: 476 GYLRASETSRDRMEDATMILNVGDDVEAKFTGVDRKNRVVSLSVRAKNDADEKETISTV 534
>gi|27366257|ref|NP_761785.1| 30S ribosomal protein S1 [Vibrio vulnificus CMCP6]
gi|27362458|gb|AAO11312.1| ribosomal protein S1 [Vibrio vulnificus CMCP6]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V++ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLEIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEETVRE-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 427 ERISLGIKQMENDPFNAYVAD--NKKGALVNGTVTAVDAKGATIELEDGV 474
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDATLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 KQLEEDPLLETLEKVIPQD----GSVISDS 153
K +E E + + D G+ ++D+
Sbjct: 520 KAKDEAEEQEAMASINKADEAAFGNAMADA 549
>gi|258621309|ref|ZP_05716343.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
gi|258625367|ref|ZP_05720264.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
gi|262171091|ref|ZP_06038769.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
gi|424807147|ref|ZP_18232555.1| 30S ribosomal protein S1 [Vibrio mimicus SX-4]
gi|449144442|ref|ZP_21775257.1| 30S ribosomal protein S1 [Vibrio mimicus CAIM 602]
gi|258582358|gb|EEW07210.1| 30S ribosomal protein S1 [Vibrio mimicus VM603]
gi|258586697|gb|EEW11412.1| 30S ribosomal protein S1 [Vibrio mimicus VM573]
gi|261892167|gb|EEY38153.1| SSU ribosomal protein S1p [Vibrio mimicus MB-451]
gi|342325089|gb|EGU20869.1| 30S ribosomal protein S1 [Vibrio mimicus SX-4]
gi|449079943|gb|EMB50862.1| 30S ribosomal protein S1 [Vibrio mimicus CAIM 602]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 427 ERISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|261210556|ref|ZP_05924849.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
gi|260840341|gb|EEX66912.1| SSU ribosomal protein S1p [Vibrio sp. RC341]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 427 ERISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDS 153
K +E E + + D + ++
Sbjct: 520 KAKDEAEEQEAMATINKADDAAFGNA 545
>gi|15641917|ref|NP_231549.1| 30S ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|147673739|ref|YP_001217448.1| 30S ribosomal protein S1 [Vibrio cholerae O395]
gi|227082045|ref|YP_002810596.1| 30S ribosomal protein S1 [Vibrio cholerae M66-2]
gi|227118363|ref|YP_002820259.1| ribosomal protein S1 [Vibrio cholerae O395]
gi|229507989|ref|ZP_04397494.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
gi|229515301|ref|ZP_04404761.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
gi|229518911|ref|ZP_04408354.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
gi|229521837|ref|ZP_04411254.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
gi|229523935|ref|ZP_04413340.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
gi|229529059|ref|ZP_04418449.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
gi|229607535|ref|YP_002878183.1| 30S ribosomal protein S1 [Vibrio cholerae MJ-1236]
gi|254286724|ref|ZP_04961678.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
gi|254849003|ref|ZP_05238353.1| ribosomal protein S1 [Vibrio cholerae MO10]
gi|255745326|ref|ZP_05419275.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
gi|360035798|ref|YP_004937561.1| 30S ribosomal protein S1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|379741748|ref|YP_005333717.1| 30S ribosomal protein S1 [Vibrio cholerae IEC224]
gi|384424906|ref|YP_005634264.1| 30S ribosomal protein S1 [Vibrio cholerae LMA3984-4]
gi|417813960|ref|ZP_12460613.1| ribosomal protein S1 [Vibrio cholerae HC-49A2]
gi|417817697|ref|ZP_12464326.1| ribosomal protein S1 [Vibrio cholerae HCUF01]
gi|417821268|ref|ZP_12467882.1| ribosomal protein S1 [Vibrio cholerae HE39]
gi|417825136|ref|ZP_12471724.1| ribosomal protein S1 [Vibrio cholerae HE48]
gi|418334935|ref|ZP_12943849.1| ribosomal protein S1 [Vibrio cholerae HC-06A1]
gi|418338552|ref|ZP_12947446.1| ribosomal protein S1 [Vibrio cholerae HC-23A1]
gi|418346470|ref|ZP_12951232.1| ribosomal protein S1 [Vibrio cholerae HC-28A1]
gi|418350232|ref|ZP_12954963.1| ribosomal protein S1 [Vibrio cholerae HC-43A1]
gi|418355439|ref|ZP_12958158.1| ribosomal protein S1 [Vibrio cholerae HC-61A1]
gi|419826894|ref|ZP_14350393.1| ribosomal protein S1 [Vibrio cholerae CP1033(6)]
gi|419830390|ref|ZP_14353875.1| ribosomal protein S1 [Vibrio cholerae HC-1A2]
gi|419834069|ref|ZP_14357524.1| ribosomal protein S1 [Vibrio cholerae HC-61A2]
gi|419837645|ref|ZP_14361083.1| ribosomal protein S1 [Vibrio cholerae HC-46B1]
gi|421318314|ref|ZP_15768882.1| ribosomal protein S1 [Vibrio cholerae CP1032(5)]
gi|421321687|ref|ZP_15772240.1| ribosomal protein S1 [Vibrio cholerae CP1038(11)]
gi|421325486|ref|ZP_15776010.1| ribosomal protein S1 [Vibrio cholerae CP1041(14)]
gi|421329148|ref|ZP_15779658.1| ribosomal protein S1 [Vibrio cholerae CP1042(15)]
gi|421333055|ref|ZP_15783532.1| ribosomal protein S1 [Vibrio cholerae CP1046(19)]
gi|421336644|ref|ZP_15787105.1| ribosomal protein S1 [Vibrio cholerae CP1048(21)]
gi|421340075|ref|ZP_15790507.1| ribosomal protein S1 [Vibrio cholerae HC-20A2]
gi|421344595|ref|ZP_15794998.1| ribosomal protein S1 [Vibrio cholerae HC-43B1]
gi|421348311|ref|ZP_15798688.1| ribosomal protein S1 [Vibrio cholerae HC-46A1]
gi|421351656|ref|ZP_15802021.1| ribosomal protein S1 [Vibrio cholerae HE-25]
gi|421354589|ref|ZP_15804921.1| ribosomal protein S1 [Vibrio cholerae HE-45]
gi|422307866|ref|ZP_16395020.1| ribosomal protein S1 [Vibrio cholerae CP1035(8)]
gi|422897022|ref|ZP_16934472.1| ribosomal protein S1 [Vibrio cholerae HC-40A1]
gi|422903224|ref|ZP_16938200.1| ribosomal protein S1 [Vibrio cholerae HC-48A1]
gi|422907108|ref|ZP_16941912.1| ribosomal protein S1 [Vibrio cholerae HC-70A1]
gi|422913955|ref|ZP_16948461.1| ribosomal protein S1 [Vibrio cholerae HFU-02]
gi|422917771|ref|ZP_16952089.1| ribosomal protein S1 [Vibrio cholerae HC-02A1]
gi|422923220|ref|ZP_16956378.1| ribosomal protein S1 [Vibrio cholerae BJG-01]
gi|422926161|ref|ZP_16959175.1| ribosomal protein S1 [Vibrio cholerae HC-38A1]
gi|423145480|ref|ZP_17133074.1| ribosomal protein S1 [Vibrio cholerae HC-19A1]
gi|423150156|ref|ZP_17137470.1| ribosomal protein S1 [Vibrio cholerae HC-21A1]
gi|423153976|ref|ZP_17141157.1| ribosomal protein S1 [Vibrio cholerae HC-22A1]
gi|423157060|ref|ZP_17144153.1| ribosomal protein S1 [Vibrio cholerae HC-32A1]
gi|423160630|ref|ZP_17147570.1| ribosomal protein S1 [Vibrio cholerae HC-33A2]
gi|423165450|ref|ZP_17152179.1| ribosomal protein S1 [Vibrio cholerae HC-48B2]
gi|423731467|ref|ZP_17704770.1| ribosomal protein S1 [Vibrio cholerae HC-17A1]
gi|423735597|ref|ZP_17708794.1| ribosomal protein S1 [Vibrio cholerae HC-41B1]
gi|423822676|ref|ZP_17716686.1| ribosomal protein S1 [Vibrio cholerae HC-55C2]
gi|423856417|ref|ZP_17720493.1| ribosomal protein S1 [Vibrio cholerae HC-59A1]
gi|423882943|ref|ZP_17724080.1| ribosomal protein S1 [Vibrio cholerae HC-60A1]
gi|423895358|ref|ZP_17727105.1| ribosomal protein S1 [Vibrio cholerae HC-62A1]
gi|423930796|ref|ZP_17731499.1| ribosomal protein S1 [Vibrio cholerae HC-77A1]
gi|423956429|ref|ZP_17734983.1| ribosomal protein S1 [Vibrio cholerae HE-40]
gi|423985215|ref|ZP_17738532.1| ribosomal protein S1 [Vibrio cholerae HE-46]
gi|423998201|ref|ZP_17741453.1| ribosomal protein S1 [Vibrio cholerae HC-02C1]
gi|424002911|ref|ZP_17745986.1| ribosomal protein S1 [Vibrio cholerae HC-17A2]
gi|424006700|ref|ZP_17749670.1| ribosomal protein S1 [Vibrio cholerae HC-37A1]
gi|424009937|ref|ZP_17752874.1| ribosomal protein S1 [Vibrio cholerae HC-44C1]
gi|424017094|ref|ZP_17756923.1| ribosomal protein S1 [Vibrio cholerae HC-55B2]
gi|424020019|ref|ZP_17759805.1| ribosomal protein S1 [Vibrio cholerae HC-59B1]
gi|424024681|ref|ZP_17764332.1| ribosomal protein S1 [Vibrio cholerae HC-62B1]
gi|424027566|ref|ZP_17767169.1| ribosomal protein S1 [Vibrio cholerae HC-69A1]
gi|424586838|ref|ZP_18026417.1| ribosomal protein S1 [Vibrio cholerae CP1030(3)]
gi|424591580|ref|ZP_18031007.1| ribosomal protein S1 [Vibrio cholerae CP1037(10)]
gi|424595485|ref|ZP_18034806.1| ribosomal protein S1 [Vibrio cholerae CP1040(13)]
gi|424599401|ref|ZP_18038582.1| ribosomal protein S1 [Vibrio Cholerae CP1044(17)]
gi|424602122|ref|ZP_18041264.1| ribosomal protein S1 [Vibrio cholerae CP1047(20)]
gi|424607093|ref|ZP_18046037.1| ribosomal protein S1 [Vibrio cholerae CP1050(23)]
gi|424610916|ref|ZP_18049755.1| ribosomal protein S1 [Vibrio cholerae HC-39A1]
gi|424613729|ref|ZP_18052517.1| ribosomal protein S1 [Vibrio cholerae HC-41A1]
gi|424617709|ref|ZP_18056381.1| ribosomal protein S1 [Vibrio cholerae HC-42A1]
gi|424622488|ref|ZP_18060996.1| ribosomal protein S1 [Vibrio cholerae HC-47A1]
gi|424625387|ref|ZP_18063848.1| ribosomal protein S1 [Vibrio cholerae HC-50A1]
gi|424629873|ref|ZP_18068160.1| ribosomal protein S1 [Vibrio cholerae HC-51A1]
gi|424633916|ref|ZP_18072016.1| ribosomal protein S1 [Vibrio cholerae HC-52A1]
gi|424636998|ref|ZP_18075006.1| ribosomal protein S1 [Vibrio cholerae HC-55A1]
gi|424640907|ref|ZP_18078790.1| ribosomal protein S1 [Vibrio cholerae HC-56A1]
gi|424645452|ref|ZP_18083188.1| ribosomal protein S1 [Vibrio cholerae HC-56A2]
gi|424648975|ref|ZP_18086638.1| ribosomal protein S1 [Vibrio cholerae HC-57A1]
gi|424653221|ref|ZP_18090601.1| ribosomal protein S1 [Vibrio cholerae HC-57A2]
gi|424657042|ref|ZP_18094327.1| ribosomal protein S1 [Vibrio cholerae HC-81A2]
gi|429887943|ref|ZP_19369447.1| SSU ribosomal protein S1p [Vibrio cholerae PS15]
gi|440710118|ref|ZP_20890769.1| SSU ribosomal protein S1p [Vibrio cholerae 4260B]
gi|443504278|ref|ZP_21071236.1| ribosomal protein S1 [Vibrio cholerae HC-64A1]
gi|443508176|ref|ZP_21074939.1| ribosomal protein S1 [Vibrio cholerae HC-65A1]
gi|443512018|ref|ZP_21078656.1| ribosomal protein S1 [Vibrio cholerae HC-67A1]
gi|443515576|ref|ZP_21082087.1| ribosomal protein S1 [Vibrio cholerae HC-68A1]
gi|443519370|ref|ZP_21085766.1| ribosomal protein S1 [Vibrio cholerae HC-71A1]
gi|443524260|ref|ZP_21090473.1| ribosomal protein S1 [Vibrio cholerae HC-72A2]
gi|443527894|ref|ZP_21093943.1| ribosomal protein S1 [Vibrio cholerae HC-78A1]
gi|443531857|ref|ZP_21097871.1| ribosomal protein S1 [Vibrio cholerae HC-7A1]
gi|443535654|ref|ZP_21101532.1| ribosomal protein S1 [Vibrio cholerae HC-80A1]
gi|443539201|ref|ZP_21105055.1| ribosomal protein S1 [Vibrio cholerae HC-81A1]
gi|449055655|ref|ZP_21734323.1| SSU ribosomal protein S1p [Vibrio cholerae O1 str. Inaba G4222]
gi|9656450|gb|AAF95063.1| ribosomal protein S1 [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|146315622|gb|ABQ20161.1| ribosomal protein S1 [Vibrio cholerae O395]
gi|150423151|gb|EDN15098.1| ribosomal protein S1 [Vibrio cholerae AM-19226]
gi|227009933|gb|ACP06145.1| ribosomal protein S1 [Vibrio cholerae M66-2]
gi|227013813|gb|ACP10023.1| ribosomal protein S1 [Vibrio cholerae O395]
gi|229332833|gb|EEN98319.1| SSU ribosomal protein S1p [Vibrio cholerae 12129(1)]
gi|229337516|gb|EEO02533.1| SSU ribosomal protein S1p [Vibrio cholerae bv. albensis VL426]
gi|229340762|gb|EEO05767.1| SSU ribosomal protein S1p [Vibrio cholerae TM 11079-80]
gi|229343600|gb|EEO08575.1| SSU ribosomal protein S1p [Vibrio cholerae RC9]
gi|229348006|gb|EEO12965.1| SSU ribosomal protein S1p [Vibrio cholerae TMA 21]
gi|229355494|gb|EEO20415.1| SSU ribosomal protein S1p [Vibrio cholerae BX 330286]
gi|229370190|gb|ACQ60613.1| SSU ribosomal protein S1p [Vibrio cholerae MJ-1236]
gi|254844708|gb|EET23122.1| ribosomal protein S1 [Vibrio cholerae MO10]
gi|255737156|gb|EET92552.1| SSU ribosomal protein S1p [Vibrio cholera CIRS 101]
gi|327484459|gb|AEA78866.1| SSU ribosomal protein S1p [Vibrio cholerae LMA3984-4]
gi|340036446|gb|EGQ97422.1| ribosomal protein S1 [Vibrio cholerae HC-49A2]
gi|340037420|gb|EGQ98395.1| ribosomal protein S1 [Vibrio cholerae HCUF01]
gi|340038899|gb|EGQ99873.1| ribosomal protein S1 [Vibrio cholerae HE39]
gi|340046621|gb|EGR07551.1| ribosomal protein S1 [Vibrio cholerae HE48]
gi|341621315|gb|EGS47061.1| ribosomal protein S1 [Vibrio cholerae HC-70A1]
gi|341621458|gb|EGS47203.1| ribosomal protein S1 [Vibrio cholerae HC-48A1]
gi|341622383|gb|EGS48046.1| ribosomal protein S1 [Vibrio cholerae HC-40A1]
gi|341636653|gb|EGS61347.1| ribosomal protein S1 [Vibrio cholerae HC-02A1]
gi|341637616|gb|EGS62294.1| ribosomal protein S1 [Vibrio cholerae HFU-02]
gi|341644312|gb|EGS68537.1| ribosomal protein S1 [Vibrio cholerae BJG-01]
gi|341646367|gb|EGS70481.1| ribosomal protein S1 [Vibrio cholerae HC-38A1]
gi|356417644|gb|EHH71259.1| ribosomal protein S1 [Vibrio cholerae HC-06A1]
gi|356418516|gb|EHH72113.1| ribosomal protein S1 [Vibrio cholerae HC-21A1]
gi|356423090|gb|EHH76551.1| ribosomal protein S1 [Vibrio cholerae HC-19A1]
gi|356428536|gb|EHH81762.1| ribosomal protein S1 [Vibrio cholerae HC-22A1]
gi|356430194|gb|EHH83403.1| ribosomal protein S1 [Vibrio cholerae HC-23A1]
gi|356433549|gb|EHH86738.1| ribosomal protein S1 [Vibrio cholerae HC-28A1]
gi|356439717|gb|EHH92682.1| ribosomal protein S1 [Vibrio cholerae HC-32A1]
gi|356444728|gb|EHH97537.1| ribosomal protein S1 [Vibrio cholerae HC-43A1]
gi|356445727|gb|EHH98529.1| ribosomal protein S1 [Vibrio cholerae HC-33A2]
gi|356450971|gb|EHI03676.1| ribosomal protein S1 [Vibrio cholerae HC-48B2]
gi|356451937|gb|EHI04616.1| ribosomal protein S1 [Vibrio cholerae HC-61A1]
gi|356646952|gb|AET27007.1| 30S ribosomal protein S1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795258|gb|AFC58729.1| 30S ribosomal protein S1 [Vibrio cholerae IEC224]
gi|395916572|gb|EJH27402.1| ribosomal protein S1 [Vibrio cholerae CP1032(5)]
gi|395917324|gb|EJH28152.1| ribosomal protein S1 [Vibrio cholerae CP1041(14)]
gi|395918681|gb|EJH29505.1| ribosomal protein S1 [Vibrio cholerae CP1038(11)]
gi|395927682|gb|EJH38445.1| ribosomal protein S1 [Vibrio cholerae CP1042(15)]
gi|395928457|gb|EJH39210.1| ribosomal protein S1 [Vibrio cholerae CP1046(19)]
gi|395931743|gb|EJH42487.1| ribosomal protein S1 [Vibrio cholerae CP1048(21)]
gi|395939358|gb|EJH50040.1| ribosomal protein S1 [Vibrio cholerae HC-20A2]
gi|395940675|gb|EJH51356.1| ribosomal protein S1 [Vibrio cholerae HC-43B1]
gi|395942890|gb|EJH53566.1| ribosomal protein S1 [Vibrio cholerae HC-46A1]
gi|395952101|gb|EJH62715.1| ribosomal protein S1 [Vibrio cholerae HE-25]
gi|395953714|gb|EJH64327.1| ribosomal protein S1 [Vibrio cholerae HE-45]
gi|395958915|gb|EJH69370.1| ribosomal protein S1 [Vibrio cholerae HC-56A2]
gi|395959520|gb|EJH69948.1| ribosomal protein S1 [Vibrio cholerae HC-57A2]
gi|395962166|gb|EJH72467.1| ribosomal protein S1 [Vibrio cholerae HC-42A1]
gi|395970877|gb|EJH80594.1| ribosomal protein S1 [Vibrio cholerae HC-47A1]
gi|395973480|gb|EJH83039.1| ribosomal protein S1 [Vibrio cholerae CP1030(3)]
gi|395975863|gb|EJH85337.1| ribosomal protein S1 [Vibrio cholerae CP1047(20)]
gi|408007238|gb|EKG45331.1| ribosomal protein S1 [Vibrio cholerae HC-39A1]
gi|408012529|gb|EKG50306.1| ribosomal protein S1 [Vibrio cholerae HC-50A1]
gi|408013138|gb|EKG50883.1| ribosomal protein S1 [Vibrio cholerae HC-41A1]
gi|408018221|gb|EKG55680.1| ribosomal protein S1 [Vibrio cholerae HC-52A1]
gi|408023460|gb|EKG60623.1| ribosomal protein S1 [Vibrio cholerae HC-56A1]
gi|408024048|gb|EKG61184.1| ribosomal protein S1 [Vibrio cholerae HC-55A1]
gi|408031470|gb|EKG68092.1| ribosomal protein S1 [Vibrio cholerae CP1037(10)]
gi|408032378|gb|EKG68964.1| ribosomal protein S1 [Vibrio cholerae CP1040(13)]
gi|408032924|gb|EKG69493.1| ribosomal protein S1 [Vibrio cholerae HC-57A1]
gi|408041784|gb|EKG77878.1| ribosomal protein S1 [Vibrio Cholerae CP1044(17)]
gi|408043268|gb|EKG79274.1| ribosomal protein S1 [Vibrio cholerae CP1050(23)]
gi|408053600|gb|EKG88605.1| ribosomal protein S1 [Vibrio cholerae HC-81A2]
gi|408055226|gb|EKG90165.1| ribosomal protein S1 [Vibrio cholerae HC-51A1]
gi|408607684|gb|EKK81087.1| ribosomal protein S1 [Vibrio cholerae CP1033(6)]
gi|408618818|gb|EKK91876.1| ribosomal protein S1 [Vibrio cholerae CP1035(8)]
gi|408620163|gb|EKK93175.1| ribosomal protein S1 [Vibrio cholerae HC-1A2]
gi|408624089|gb|EKK97041.1| ribosomal protein S1 [Vibrio cholerae HC-17A1]
gi|408629780|gb|EKL02449.1| ribosomal protein S1 [Vibrio cholerae HC-41B1]
gi|408634652|gb|EKL06887.1| ribosomal protein S1 [Vibrio cholerae HC-55C2]
gi|408640705|gb|EKL12491.1| ribosomal protein S1 [Vibrio cholerae HC-59A1]
gi|408641067|gb|EKL12848.1| ribosomal protein S1 [Vibrio cholerae HC-60A1]
gi|408648891|gb|EKL20208.1| ribosomal protein S1 [Vibrio cholerae HC-61A2]
gi|408654228|gb|EKL25370.1| ribosomal protein S1 [Vibrio cholerae HC-77A1]
gi|408655158|gb|EKL26283.1| ribosomal protein S1 [Vibrio cholerae HC-62A1]
gi|408657650|gb|EKL28728.1| ribosomal protein S1 [Vibrio cholerae HE-40]
gi|408664446|gb|EKL35283.1| ribosomal protein S1 [Vibrio cholerae HE-46]
gi|408845308|gb|EKL85424.1| ribosomal protein S1 [Vibrio cholerae HC-37A1]
gi|408846081|gb|EKL86193.1| ribosomal protein S1 [Vibrio cholerae HC-17A2]
gi|408852556|gb|EKL92378.1| ribosomal protein S1 [Vibrio cholerae HC-02C1]
gi|408856193|gb|EKL95888.1| ribosomal protein S1 [Vibrio cholerae HC-46B1]
gi|408860002|gb|EKL99656.1| ribosomal protein S1 [Vibrio cholerae HC-55B2]
gi|408863732|gb|EKM03206.1| ribosomal protein S1 [Vibrio cholerae HC-44C1]
gi|408867113|gb|EKM06475.1| ribosomal protein S1 [Vibrio cholerae HC-59B1]
gi|408870423|gb|EKM09703.1| ribosomal protein S1 [Vibrio cholerae HC-62B1]
gi|408878869|gb|EKM17862.1| ribosomal protein S1 [Vibrio cholerae HC-69A1]
gi|429224942|gb|EKY31240.1| SSU ribosomal protein S1p [Vibrio cholerae PS15]
gi|439974341|gb|ELP50518.1| SSU ribosomal protein S1p [Vibrio cholerae 4260B]
gi|443431223|gb|ELS73775.1| ribosomal protein S1 [Vibrio cholerae HC-64A1]
gi|443435118|gb|ELS81262.1| ribosomal protein S1 [Vibrio cholerae HC-65A1]
gi|443439001|gb|ELS88716.1| ribosomal protein S1 [Vibrio cholerae HC-67A1]
gi|443442986|gb|ELS96288.1| ribosomal protein S1 [Vibrio cholerae HC-68A1]
gi|443446788|gb|ELT03444.1| ribosomal protein S1 [Vibrio cholerae HC-71A1]
gi|443449594|gb|ELT09885.1| ribosomal protein S1 [Vibrio cholerae HC-72A2]
gi|443453766|gb|ELT17584.1| ribosomal protein S1 [Vibrio cholerae HC-78A1]
gi|443457247|gb|ELT24644.1| ribosomal protein S1 [Vibrio cholerae HC-7A1]
gi|443461194|gb|ELT32267.1| ribosomal protein S1 [Vibrio cholerae HC-80A1]
gi|443465301|gb|ELT39961.1| ribosomal protein S1 [Vibrio cholerae HC-81A1]
gi|448264694|gb|EMB01931.1| SSU ribosomal protein S1p [Vibrio cholerae O1 str. Inaba G4222]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR--- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 314 KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 428 RISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|365538375|ref|ZP_09363550.1| 30S ribosomal protein S1 [Vibrio ordalii ATCC 33509]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVPGEEAVRD-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + G++++ + + + TIE + G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAD--NKKGTLVNGTVTAVDAKGATIELVDGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SE S D I+D +L+ GD V K +DR+ I LSI
Sbjct: 465 GATIEL--VDGV---EGYIRASEASRDRIEDASLVLSVGDSVEAKFTGVDRKNRVINLSI 519
Query: 128 K---QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPG 169
K + +E + TL K SD + ++ ++ + G
Sbjct: 520 KAKDEADEQEAMATLNK---------SDEGAFGNAMADAFKAAKG 555
>gi|422909685|ref|ZP_16944328.1| ribosomal protein S1 [Vibrio cholerae HE-09]
gi|424659624|ref|ZP_18096873.1| ribosomal protein S1 [Vibrio cholerae HE-16]
gi|341634445|gb|EGS59203.1| ribosomal protein S1 [Vibrio cholerae HE-09]
gi|408051980|gb|EKG87046.1| ribosomal protein S1 [Vibrio cholerae HE-16]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR--- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 314 KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 428 RISLGIKQMENDPFNAYVAD--NKKGALVNGTVTAVDAKGATIELEDGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|262404268|ref|ZP_06080823.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
gi|262349300|gb|EEY98438.1| SSU ribosomal protein S1p [Vibrio sp. RC586]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR--- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 314 KNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQ+E DP
Sbjct: 428 RISLGIKQMENDPF 441
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GAAIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|336124541|ref|YP_004566589.1| 30S ribosomal protein S1P [Vibrio anguillarum 775]
gi|335342264|gb|AEH33547.1| SSU ribosomal protein S1P [Vibrio anguillarum 775]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVPGEEAVRD-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP + + G++++ + + + TIE + G+
Sbjct: 427 ERISLGVKQMENDPFNAYVAD--NKKGTLVNGTVTAVDAKGATIELVDGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLETLE 140
G + SE S D I+D +L+ GD V K +DR+ I LSIK + +E + TL
Sbjct: 476 GYIRASEASRDRIEDASLVLSVGDSVEAKFTGVDRKNRVINLSIKAKDEADEQEAMATLN 535
Query: 141 K 141
K
Sbjct: 536 K 536
>gi|321437419|gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group]
Length = 415
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----R 65
Q S A+ L + +K ++ +EE +LV S + A+ + +++ + + +G +
Sbjct: 219 QISAKSTAEELIDKELPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGIGSVVLGTVQSLK 277
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAF+ + + GL+HVS++S D + DI +L GD ++V ++ DRE+ R++L
Sbjct: 278 PYGAFVDIG------GINGLLHVSQISHDRVSDISTVLQPGDTLKVMILSHDRERGRVSL 331
Query: 126 SIKQLEEDP 134
S K+LE P
Sbjct: 332 STKKLEPTP 340
>gi|260768940|ref|ZP_05877874.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
gi|260616970|gb|EEX42155.1| SSU ribosomal protein S1p [Vibrio furnissii CIP 102972]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ+E DP
Sbjct: 427 ERISLGVKQMENDPF 441
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSSS 155
K +E E + + QD + ++ +
Sbjct: 520 KAKDEAEEQEAMASINKQDDAAFGNAMA 547
>gi|153825197|ref|ZP_01977864.1| ribosomal protein S1, partial [Vibrio cholerae MZO-2]
gi|149741176|gb|EDM55227.1| ribosomal protein S1 [Vibrio cholerae MZO-2]
Length = 544
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 192 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 245
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 246 GLKQLGEDP 254
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 301 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 360
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 361 SITDFGIFIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAER 414
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 415 ERISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 462
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 277 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 330
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 331 SLGLKQCKANP 341
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 453 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 507
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 508 KAKDEAEEQEVMATLNK 524
>gi|262166045|ref|ZP_06033782.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
gi|262025761|gb|EEY44429.1| SSU ribosomal protein S1p [Vibrio mimicus VM223]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 427 ERISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRIEDASLILSVGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 520 KAKDEAEEQEVMATLNK 536
>gi|24983268|gb|AAN67392.1|AE016365_7 ribosomal protein S1 [Pseudomonas putida KT2440]
Length = 576
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDEV V+V+K DRE++R++L
Sbjct: 222 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSL 275
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 276 GLKQMGEDP 284
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 331 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIK 390
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ ++ +D E+
Sbjct: 391 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRR-FKKGDELETVILSVDPER 444
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 445 ERISLGIKQLEDDPF 459
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 307 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 360
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 361 SLGIKQCKSNP 371
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 496 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 538
>gi|375131462|ref|YP_004993562.1| 30S ribosomal protein S1 [Vibrio furnissii NCTC 11218]
gi|315180636|gb|ADT87550.1| 30S ribosomal protein S1 [Vibrio furnissii NCTC 11218]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRE-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ+E DP
Sbjct: 427 ERISLGVKQMENDPF 441
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D ++D IL+ GD+V K +DR+ I LSI
Sbjct: 465 GATIELE--DGV---EGYIRASEVSRDRVEDASLILSIGDKVEAKFTGVDRKNRVINLSI 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSSS 155
K +E E + + QD + ++ +
Sbjct: 520 KAKDEAEEQEAMASINKQDDAAFGNAMA 547
>gi|121591424|ref|ZP_01678703.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
gi|121546719|gb|EAX56895.1| ribosomal protein S1 [Vibrio cholerae 2740-80]
Length = 542
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 190 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 243
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 244 GLKQLGEDP 252
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 299 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 358
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 359 SITDFGIFIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAER 412
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 413 ERISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 460
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 275 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 328
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 329 SLGLKQCKANP 339
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 451 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 505
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 506 KAKDEAEEQEVMATLNK 522
>gi|170720565|ref|YP_001748253.1| 30S ribosomal protein S1 [Pseudomonas putida W619]
gi|169758568|gb|ACA71884.1| ribosomal protein S1 [Pseudomonas putida W619]
Length = 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDEV V+V+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRR-FKKGDELETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 427 ERISLGIKQLEDDPF 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|322389474|ref|ZP_08063026.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
gi|321143852|gb|EFX39278.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 903]
Length = 399
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E EK
Sbjct: 355 AQEEGEK 361
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
++VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|161507459|ref|YP_001577413.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
gi|160348448|gb|ABX27122.1| 30S ribosomal protein S1 [Lactobacillus helveticus DPC 4571]
Length = 403
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD + ++K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKVI +++ ++ S K + + + ++ +N D+F G ++GAF+ +
Sbjct: 243 AGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTNFGAFVEV 302
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L V+VKV+ ID RI+LSIK
Sbjct: 303 --ADGI---QGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSDRRISLSIK 352
>gi|443327239|ref|ZP_21055869.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442793178|gb|ELS02635.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 299
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 13/130 (10%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G +++V I+ N E +KLV S+++A+ + +R+ + G + YGAF+ L
Sbjct: 160 LIGQLLTVTFIEVNPEKRKLVLSQRNAMRAEALTRLVEGALVTGTIVNMKPYGAFVDLG- 218
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP- 134
+TGL+HV EVS + +IL G E++V + ++D +R++LS K EE P
Sbjct: 219 -----GVTGLLHVKEVSGTRTDSLENILQIGQEIKVVIAQVDEYNNRLSLSTKVFEEYPG 273
Query: 135 -LLETLEKVI 143
+LE E+V+
Sbjct: 274 EILEKFEQVM 283
>gi|148549148|ref|YP_001269250.1| 30S ribosomal protein S1 [Pseudomonas putida F1]
gi|161378133|ref|NP_743928.2| 30S ribosomal protein S1 [Pseudomonas putida KT2440]
gi|167032375|ref|YP_001667606.1| 30S ribosomal protein S1 [Pseudomonas putida GB-1]
gi|325276950|ref|ZP_08142633.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
gi|339486340|ref|YP_004700868.1| 30S ribosomal protein S1 [Pseudomonas putida S16]
gi|386013356|ref|YP_005931633.1| RpsA [Pseudomonas putida BIRD-1]
gi|395444837|ref|YP_006385090.1| ribosomal protein S1 [Pseudomonas putida ND6]
gi|397695769|ref|YP_006533652.1| 30S ribosomal protein S1 [Pseudomonas putida DOT-T1E]
gi|421522461|ref|ZP_15969102.1| 30S ribosomal protein S1 [Pseudomonas putida LS46]
gi|431801327|ref|YP_007228230.1| 30S ribosomal protein S1 [Pseudomonas putida HB3267]
gi|148513206|gb|ABQ80066.1| SSU ribosomal protein S1P [Pseudomonas putida F1]
gi|166858863|gb|ABY97270.1| ribosomal protein S1 [Pseudomonas putida GB-1]
gi|313500062|gb|ADR61428.1| RpsA [Pseudomonas putida BIRD-1]
gi|324097915|gb|EGB96078.1| 30S ribosomal protein S1 [Pseudomonas sp. TJI-51]
gi|338837183|gb|AEJ11988.1| 30S ribosomal protein S1 [Pseudomonas putida S16]
gi|388558834|gb|AFK67975.1| ribosomal protein S1 [Pseudomonas putida ND6]
gi|397332499|gb|AFO48858.1| 30S ribosomal protein S1 [Pseudomonas putida DOT-T1E]
gi|402753561|gb|EJX14054.1| 30S ribosomal protein S1 [Pseudomonas putida LS46]
gi|430792092|gb|AGA72287.1| 30S ribosomal protein S1 [Pseudomonas putida HB3267]
Length = 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDEV V+V+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRR-FKKGDELETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 427 ERISLGIKQLEDDPF 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|398846604|ref|ZP_10603571.1| ribosomal protein S1 [Pseudomonas sp. GM84]
gi|398252428|gb|EJN37618.1| ribosomal protein S1 [Pseudomonas sp. GM84]
Length = 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDEV V+V+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVNVGDEVDVRVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S + N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFSGQFNKGDKITGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNETGEEAVRR-FKKGDELETVILSVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 427 ERISLGIKQLEDDPF 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ SE+S D ++D R++L EG+E+ K+I +DR+ I+LSIK
Sbjct: 478 LKASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIK 520
>gi|337281927|ref|YP_004621398.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
gi|419801118|ref|ZP_14326362.1| 30S ribosomal protein S1 [Streptococcus parasanguinis F0449]
gi|335369520|gb|AEH55470.1| 30S ribosomal protein S1 [Streptococcus parasanguinis ATCC 15912]
gi|385692735|gb|EIG23406.1| 30S ribosomal protein S1 [Streptococcus parasanguinis F0449]
Length = 399
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E EK
Sbjct: 355 AQEEGEK 361
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV DI G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDIVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
++VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|189219063|ref|YP_001939704.1| ribosomal protein S1 [Methylacidiphilum infernorum V4]
gi|189185921|gb|ACD83106.1| Ribosomal protein S1 [Methylacidiphilum infernorum V4]
Length = 449
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 23/147 (15%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWN-------KYSSRVNVEDIF 62
P K++ E G+ ++ K+++ +EE K +V S ++ V ++ +V+V D+
Sbjct: 130 PPKNLKE----YEGATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEKVHVGDLV 185
Query: 63 VG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117
G D+GAFI L DG+ GL+H++++SW I +IL G E+ V VI +D
Sbjct: 186 KGVVKNVTDFGAFIDL---DGI---DGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVD 239
Query: 118 REKSRITLSIKQLEEDPLLETLEKVIP 144
REK R++L +KQ +P E +E+ P
Sbjct: 240 REKERVSLGLKQKTPNP-WENIEEKYP 265
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+ N+E +KL S K W K S + G+ YGA++ L
Sbjct: 315 GQEVEAIVLDLNKEEQKLSLSLKALEVNPWEKASETYPPGSLIKGKVKNFSAYGAYVELE 374
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
L G +HV+++SW I ++L +G+++ KV++ID+ +I L IKQL ED
Sbjct: 375 -----NGLDGFIHVNDLSWTRKINHPSEVLKKGEQIEAKVLEIDKTNQKILLGIKQLTED 429
Query: 134 PLLETLEK 141
P E +K
Sbjct: 430 PWKEIEKK 437
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI L + GL+H+SE+SW I ++L+ G EV V+ +++E+ +++L
Sbjct: 280 YGAFIELE-----PGIEGLIHISEISWTQKITKPSEVLSMGQEVEAIVLDLNKEEQKLSL 334
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
S+K LE +P + E P GS+I S+ +E GL
Sbjct: 335 SLKALEVNPWEKASETYPP--GSLIKGKVKNFSAYGAYVELENGL 377
>gi|28199337|ref|NP_779651.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
gi|71276211|ref|ZP_00652490.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
gi|170730703|ref|YP_001776136.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
gi|182682062|ref|YP_001830222.1| 30S ribosomal protein S1 [Xylella fastidiosa M23]
gi|386083383|ref|YP_005999665.1| 30S ribosomal protein S1 [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417557988|ref|ZP_12208986.1| Ribosomal protein S1 RpsA [Xylella fastidiosa EB92.1]
gi|28057443|gb|AAO29300.1| 30S ribosomal protein S1 [Xylella fastidiosa Temecula1]
gi|71162972|gb|EAO12695.1| Ribosomal protein S1 [Xylella fastidiosa Dixon]
gi|71729776|gb|EAO31876.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
gi|71731515|gb|EAO33577.1| Ribosomal protein S1 [Xylella fastidiosa Ann-1]
gi|167965496|gb|ACA12506.1| 30S ribosomal protein S1 [Xylella fastidiosa M12]
gi|182632172|gb|ACB92948.1| ribosomal protein S1 [Xylella fastidiosa M23]
gi|307578330|gb|ADN62299.1| 30S ribosomal protein S1 [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179385|gb|EGO82333.1| Ribosomal protein S1 RpsA [Xylella fastidiosa EB92.1]
Length = 558
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDEV V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGVDGLLHIT------DMAWKRVRHPCEVVNIGDEVEVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + + + P + V S+++
Sbjct: 259 GLKQLGEDP-WDNISRRYPANCRVFGKVSNVT 289
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ +EE +++ K W ++ D G+ D+G FI L
Sbjct: 326 GDEVEVMILDVDEERRRISLGMKQVAANPWETFALTHKKGDKVSGQVKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GL+H+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLLHLSDISWNTTGEDIVRNFKKGDTLETVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ S R G+ DYGAF+ +
Sbjct: 239 GDEVEVRVLKFDRERNRVSLGLKQLGEDPWDNISRRYPANCRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + + ++ GDEV V ++ +D E+ RI+L +KQ+ +
Sbjct: 299 -----AGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMILDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|15839029|ref|NP_299717.1| 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
gi|9107629|gb|AAF85237.1|AE004052_12 30S ribosomal protein S1 [Xylella fastidiosa 9a5c]
Length = 569
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDEV V+V+K DRE++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVRHPCEVVNIGDEVEVRVLKFDRERNRVSL 269
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + + + P + V S+++
Sbjct: 270 GLKQLGEDP-WDNISRRYPANCRVFGKVSNVT 300
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ +EE +++ K W ++ D G+ D+G FI L
Sbjct: 337 GDEVEVMILDVDEERRRISLGMKQVAANPWETFALTHKKGDKVSGQVKSITDFGIFIGL- 395
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GL+H+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 396 --DG--GIDGLLHLSDISWNTTGEDIVRNFKKGDTLETVVLAVDPERERISLGVKQLEQD 451
Query: 134 PL 135
P
Sbjct: 452 PF 453
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ S R G+ DYGAF+ +
Sbjct: 250 GDEVEVRVLKFDRERNRVSLGLKQLGEDPWDNISRRYPANCRVFGKVSNVTDYGAFVEIE 309
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + + ++ GDEV V ++ +D E+ RI+L +KQ+ +
Sbjct: 310 -----AGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMILDVDEERRRISLGMKQVAAN 364
Query: 134 P 134
P
Sbjct: 365 P 365
>gi|417917651|ref|ZP_12561210.1| 30S ribosomal protein S1 [Streptococcus parasanguinis SK236]
gi|342830288|gb|EGU64627.1| 30S ribosomal protein S1 [Streptococcus parasanguinis SK236]
Length = 399
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E EK
Sbjct: 355 AQEEGEK 361
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
++VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|357235302|ref|ZP_09122645.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
gi|356883284|gb|EHI73484.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
Length = 398
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ +EE ++ S K W+ ++ D+ G+ D+GAF+ +
Sbjct: 240 GDEIDVKVLAIDEEAGRISLSLKATTPGPWDGVEQKLAAGDVIDGKVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G EV+VKV+ +D + R++LSIK L+E P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDADAERVSLSIKALQERP 354
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G I K+ + + + + S ++ V K + S++ V + G+ +G
Sbjct: 149 FVGQDIEAKIKEVDPAENRFILSRREVVEEKNAAARQEIFSKLEVGSVVKGKVARLTSFG 208
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL VHV+E+S + + +++ GDE+ VKV+ ID E RI+LS+K
Sbjct: 209 AFVDLGGVDGL------VHVTELSHERNVSPKSVVSVGDEIDVKVLAIDEEAGRISLSLK 262
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P +K+ G VI + +E LPG+
Sbjct: 263 ATTPGPWDGVEQKLAA--GDVIDGKVKRLTDFGAFVEVLPGI 302
>gi|116790591|gb|ABK25672.1| unknown [Picea sitchensis]
Length = 425
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE +LV S + A+ + +++ + + +G + YGAF+ L
Sbjct: 245 IPLKFMEVDEEQTRLVLSNRKAMADS-QAQLGIGSVVLGTVQTIKPYGAFVDL------G 297
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S D + D+ IL GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 298 GINGLLHVSQISHDRVADVGTILQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
>gi|312867675|ref|ZP_07727881.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
gi|311096738|gb|EFQ54976.1| putative ribosomal protein S1 [Streptococcus parasanguinis F0405]
Length = 399
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E EK
Sbjct: 355 AQEEGEK 361
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
++VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|224112036|ref|XP_002316061.1| predicted protein [Populus trichocarpa]
gi|222865101|gb|EEF02232.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K + +EE +LV S + A+ + +++ + + G + YGAFI +
Sbjct: 230 VPLKFVDVDEEQSRLVLSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDI------G 282
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 283 GINGLLHVSQISHDRVSDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 342
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 343 PKLVFEKAEEMARTFRQRIAQAEAMARADMLRFQPESGL 381
>gi|365919802|ref|ZP_09444166.1| ribosomal protein S1 [Cardiobacterium valvarum F0432]
gi|364578812|gb|EHM56002.1| ribosomal protein S1 [Cardiobacterium valvarum F0432]
Length = 556
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 74/131 (56%), Gaps = 18/131 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-----NVEDIFVGR-------DYGAF 70
G I K+I+ +++ +V S + + N+Y + N+++ V + DYGAF
Sbjct: 148 GKEIDFKIIKLDQKRNNIVISRRAVLENEYKAERDEVLKNLQEGDVVKAVVKNLTDYGAF 207
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL H+T +++W I+ +++N GDEV VKV+K DRE++R++L +KQL
Sbjct: 208 LDIGGVDGLLHIT------DMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLGLKQL 261
Query: 131 EEDPLLETLEK 141
DP + E+
Sbjct: 262 GSDPWGDIAER 272
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E ++ K W + R V G+ DYGAF+ +
Sbjct: 237 GDEVEVKVLKFDRERARVSLGLKQLGSDPWGDIAERYPVNSQTRGKVTNIADYGAFVEIE 296
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+ W + + R + G EV V +++ID E+ RI+L +KQ + +
Sbjct: 297 --DGV---EGLVHVSEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQPN 351
Query: 134 PLLE 137
P E
Sbjct: 352 PWQE 355
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V +++ + E +++ K W ++ + N D G+ D+G FI L
Sbjct: 324 GQEVDVMILEIDPERRRISLGMKQCQPNPWQEFDRKFNKGDHVKGQIKSITDFGVFIGLE 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GL+H+S++SWD + +R +G EV ++ ID E+ RI+L +KQL +
Sbjct: 384 -----GGIDGLIHLSDLSWDENGEEAVRH-YQKGQEVEAIILAIDAERERISLGVKQLSQ 437
Query: 133 DPL 135
D
Sbjct: 438 DTF 440
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE + + ++D+ +L+ GDE+ KVI +DR+ + LSI+ K
Sbjct: 473 VNGILKASEAAIERVEDLSKLLSVGDEIEAKVISVDRKHKTLNLSIRA-----------K 521
Query: 142 VIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQED 181
+ + +VI D + + + LG IF+EL D
Sbjct: 522 DVADEKAVIQDYTRKENHGGTS------LGDIFKELGNND 555
>gi|345878482|ref|ZP_08830194.1| D-3-phosphoglycerate dehydrogenase [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344224513|gb|EGV50904.1| D-3-phosphoglycerate dehydrogenase [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 519
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYG 68
L G + KVI+ + +V S + V +YS+ +E++ G+ DYG
Sbjct: 172 LEGKDLEFKVIKLDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQELKGVVKNLTDYG 231
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ D++ GDE+ VKV+K DRE++R++L +K
Sbjct: 232 AFVDLGGIDGLLHIT------DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 285
Query: 129 QLEEDPLLETLEKVIPQ 145
Q+ +DP + L + P+
Sbjct: 286 QMGDDPWV-ALARRYPE 301
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W++++ N D G+
Sbjct: 338 NKNIHPSKVVTLGDEVEVMVLDIDEERRRVSLGIKQCKSNPWDEFAVTHNKNDHVSGKIK 397
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SWD +D +GDEV V+ +D E+
Sbjct: 398 SITDFGIFIGL---DG--GIDGLVHLSDISWDDAGEDAIRNFKKGDEVETVVLSVDPERE 452
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL +DP
Sbjct: 453 RISLGIKQLAKDPF 466
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K D W + R G+ DYG F+ +
Sbjct: 263 GDEITVKVLKFDRERNRVSLGLKQMGDDPWVALARRYPESTRLFGKVTNIADYGCFVEIE 322
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ GDEV V V+ ID E+ R++L IKQ +
Sbjct: 323 -----EGVEGLVHVSEMDW-TNKNIHPSKVVTLGDEVEVMVLDIDEERRRVSLGIKQCKS 376
Query: 133 DP 134
+P
Sbjct: 377 NP 378
>gi|352101957|ref|ZP_08959042.1| 30S ribosomal protein S1 [Halomonas sp. HAL1]
gi|448746309|ref|ZP_21727977.1| Ribosomal S1 synthesis/modification protein [Halomonas titanicae
BH1]
gi|350600250|gb|EHA16319.1| 30S ribosomal protein S1 [Halomonas sp. HAL1]
gi|445566171|gb|ELY22278.1| Ribosomal S1 synthesis/modification protein [Halomonas titanicae
BH1]
Length = 559
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP + E+
Sbjct: 258 GLKQLGEDPWVNIKER 273
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 102
W +++ N D G D+G FI L + GLVH+S++SW D ++
Sbjct: 354 WETFNTDYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTDTGEEAVRS 408
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
+GDE ++ ID E+ RI+L IKQ++ DP+ E L + GS+++
Sbjct: 409 FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYLS--VNDKGSIVT 455
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ ++ SE+S D ++D R++LNEGD V +++ +DR+ +I LS+K ++D + L+K
Sbjct: 474 VIAVLKASEISADRVEDARNVLNEGDSVEARIVSVDRKSRQINLSVKAKDQDDTRQNLKK 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 MREQE 538
>gi|385813938|ref|YP_005850331.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
Length = 403
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++G F
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKVI + + ++ S K + + + ++ +N D+F G ++GAF+ +
Sbjct: 243 AGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTNFGAFVEV 302
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 --ADGI---QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|428201607|ref|YP_007080196.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427979039|gb|AFY76639.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 326
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + V + G + Y
Sbjct: 152 SAREAKEDLVGQELPLKFLEVDEERNRLVLSHRRALVERKMHGLEVGQVVTGTVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D + RI+LS
Sbjct: 212 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDANRGRISLST 265
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 266 KQLEPEP 272
>gi|260773187|ref|ZP_05882103.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
gi|260612326|gb|EEX37529.1| SSU ribosomal protein S1p [Vibrio metschnikovii CIP 69.14]
Length = 556
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVDVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +RD +GDE+ V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNVPGEEAVRD-YKKGDEISAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ+E DP
Sbjct: 427 ERISLGVKQMENDPF 441
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVDVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE++ D I+D +L+ GD+V K +DR+ I LSIK +E E + +
Sbjct: 476 GYIRASEIARDRIEDASLLLSVGDKVEAKFTGVDRKNRVINLSIKAKDEADEQEAMATIN 535
Query: 144 PQD----GSVISDS 153
QD G+ ++D+
Sbjct: 536 KQDEAAFGNAMADA 549
>gi|387879482|ref|YP_006309785.1| 30S ribosomal protein S1 [Streptococcus parasanguinis FW213]
gi|386792935|gb|AFJ25970.1| 30S ribosomal protein S1 [Streptococcus parasanguinis FW213]
Length = 399
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E EK
Sbjct: 355 AQEEGEK 361
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
++VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IQVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
gi|423318778|ref|ZP_17296655.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
gi|423321585|ref|ZP_17299456.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
gi|405591865|gb|EKB65324.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
gi|405594274|gb|EKB67691.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
Length = 402
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + ++ +N DIF G ++GAF+ +
Sbjct: 244 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTNFGAFVEV- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 -ADGI---QGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIK 352
>gi|335428822|ref|ZP_08555732.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
gi|335430794|ref|ZP_08557680.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
gi|334887334|gb|EGM25666.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
gi|334891763|gb|EGM30009.1| 30S ribosomal protein S1 [Haloplasma contractile SSD-17B]
Length = 466
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKVI +E + +S K + W+ ++ +N D+ G+ D+GAF+++
Sbjct: 231 GDTVNVKVIDKDENRMRATYSVKALLPKPWDIANNELNEGDVIKGKVVRITDFGAFVNV- 289
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GL+H +EVS++ + +D+L EG E+ VKV+ IDR + R++LS++ L+++P
Sbjct: 290 ----LPLVDGLLHKNEVSYNPNVEFKDVLEEGQEIEVKVLNIDRNRERLSLSLRALKDNP 345
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YGA + GLV +E+S + D++NEGD V VKVI D + R T S
Sbjct: 198 YGALVVAN------DFRGLVPNNELSHLPFKKTEDVINEGDTVNVKVIDKDENRMRATYS 251
Query: 127 IKQLEEDP 134
+K L P
Sbjct: 252 VKALLPKP 259
>gi|167947479|ref|ZP_02534553.1| 30S ribosomal protein S1 [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 222
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 19/149 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYG 68
L G + KVI+ + +V S + V +YS+ +E++ G+ DYG
Sbjct: 10 LEGKDLEFKVIKLDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQELKGVVKNLTDYG 69
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ D++ GDE+ VKV+K DRE++R++L +K
Sbjct: 70 AFVDLGGIDGLLHIT------DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 123
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMS 157
Q+ +DP + L + P+ + ++++
Sbjct: 124 QMGDDPWV-ALARRYPESTRLFGKVTNIA 151
>gi|359396508|ref|ZP_09189559.1| 30S ribosomal protein S1 [Halomonas boliviensis LC1]
gi|357969186|gb|EHJ91634.1| 30S ribosomal protein S1 [Halomonas boliviensis LC1]
Length = 559
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP + E+
Sbjct: 258 GLKQLGEDPWVNIKER 273
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 102
W +++ N D G D+G FI L + GLVH+S++SW D ++
Sbjct: 354 WETFNTDYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTDTGEEAVRS 408
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
+GDE ++ ID E+ RI+L IKQ++ DP+ E L + GS+++
Sbjct: 409 FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYLS--VNDKGSIVT 455
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ L+ SE+S D ++D R++LNEGD V +++ +DR+ +I LS+K ++D + L+K
Sbjct: 474 VIALLKASEISADRVEDARNVLNEGDSVEARIVSVDRKSRQINLSVKAKDQDDTRQNLKK 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 IREQE 538
>gi|304440262|ref|ZP_07400152.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371311|gb|EFM24927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 671
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 13/116 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+++ +EE ++ K W+++ S V V D G D+GAF+ L
Sbjct: 510 GENVEVQILNLDEEKNRIALGLKQTTKRPWDEFVSSVEVGDTVTGHVVNLLDFGAFVRLE 569
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ GL+HVS++S D I+ DILN GDEV VKV ID E +I+LSIK L
Sbjct: 570 -----SGVDGLLHVSQISRDHIEKPADILNIGDEVTVKVTDIDEENKKISLSIKAL 620
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 75/146 (51%), Gaps = 22/146 (15%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS------- 53
+ SH Q+ +++ G + ++I ++ +++V S K+ ++
Sbjct: 403 IPASHVAMRFQRDLNK----FVGQDLECEIIDFDKAKRRIVLSRKNIEEKQFEDTRKEVF 458
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S+++ D+ G D+GAF+ + DGL +H+SE+SW+ I+ +++ G+
Sbjct: 459 SKLHEGDVIEGTVQRLTDFGAFVDVGGVDGL------IHISEMSWNRIKHPSEVVAPGEN 512
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDP 134
V V+++ +D EK+RI L +KQ + P
Sbjct: 513 VEVQILNLDEEKNRIALGLKQTTKRP 538
>gi|424794322|ref|ZP_18220306.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433676293|ref|ZP_20508425.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440731386|ref|ZP_20911409.1| 30S ribosomal protein S1 [Xanthomonas translucens DAR61454]
gi|422796013|gb|EKU24602.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430818594|emb|CCP38707.1| 30S ribosomal protein S1 [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440373251|gb|ELQ10015.1| 30S ribosomal protein S1 [Xanthomonas translucens DAR61454]
Length = 559
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIARRYPANSRVYGKVSNVTDYGA-FVEIEPGV 301
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +DI +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDIVRNFKKGDTLEAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ + R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIARRYPANSRVYGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|406915508|gb|EKD54583.1| hypothetical protein ACD_60C00067G0001 [uncultured bacterium]
Length = 573
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW I+ +IL GDE++VK++K DR+ +R++L
Sbjct: 204 DYGAFIDLGGIDGLLHIT------DMSWKRIKHPNEILAIGDEIKVKILKFDRDNARVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 25/153 (16%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
P K +H G + V V+ + E +++ K W ++++ D G+
Sbjct: 318 PNKVVH------LGQEVEVIVLDIDGERRRISLGLKQCTVNPWEEFATHHQKGDKISGKI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD---LIQDIRDILNEGDEVRVKVIKIDR 118
D+G FI L DG + GL+H+S++SW+ + IR +GDE+ ++ ID
Sbjct: 372 KSITDFGIFIGL---DG--GIDGLIHLSDISWNEGSAEEAIRK-FQKGDELETIILTIDA 425
Query: 119 EKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
E+ RI+L +KQL EDP+ L + + GS +S
Sbjct: 426 ERERISLGLKQLAEDPMTNYLNQ--HEKGSAVS 456
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK+++ + + ++ K + W SSR + G+ DYG F+ +
Sbjct: 238 GDEIKVKILKFDRDNARVSLGLKQLGEDPWTDISSRYPIGKRLQGKVTNITDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + + +++ G EV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----AGIEGLVHVSEMDWTNKNVNPNKVVHLGQEVEVIVLDIDGERRRISLGLKQCTVN 352
Query: 134 P 134
P
Sbjct: 353 P 353
>gi|409386587|ref|ZP_11238969.1| SSU ribosomal protein S1p [Lactococcus raffinolactis 4877]
gi|399206193|emb|CCK19884.1| SSU ribosomal protein S1p [Lactococcus raffinolactis 4877]
Length = 413
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ +EE ++ S K W+ + V + G D+GAF+ +
Sbjct: 241 GETVQVKVLKVDEEAGRVSLSLKATQPGPWDDIDEKAPVGSVLDGTVKRITDFGAFVEI- 299
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++SW+ +++ +D+L+ G V+VKV+ + + RI+LSIK L E P
Sbjct: 300 FP----GVEGLVHISQISWERVENAKDVLSVGQAVQVKVLDVKPAEERISLSIKALTEAP 355
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----D 66
K G K+I+ N K+ + S + + + S+ ++ DI G D
Sbjct: 148 KKFVGEEFDAKIIEVNAAEKRFILSRRAVIEEESKSQRAEAFANLHEGDIVEGTVARTTD 207
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI+L DGL H+T L H ++ D++ G+ V+VKV+K+D E R++LS
Sbjct: 208 FGAFINLGGVDGLVHVTELAH------GRVKKPSDVVKVGETVQVKVLKVDEEAGRVSLS 261
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+K + P + EK P GSV+ + + +E PG+
Sbjct: 262 LKATQPGPWDDIDEKA-PV-GSVLDGTVKRITDFGAFVEIFPGV 303
>gi|333907595|ref|YP_004481181.1| 30S ribosomal protein S1 [Marinomonas posidonica IVIA-Po-181]
gi|333477601|gb|AEF54262.1| ribosomal protein S1 [Marinomonas posidonica IVIA-Po-181]
Length = 560
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P++ V + ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPENTKVTAKVTNLT 288
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K+IH G + V V+ +EE +++ K W ++++ N D G
Sbjct: 313 NKNIHPSKVVQIGDEVEVMVLDIDEERRRISLGIKQCTMNPWEEFATSFNKGDKISGAIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SWD + +R +GD + V+ ID E+
Sbjct: 373 SITDFGVFIGL---DG--GIDGLVHLSDLSWDEAGEEAVRQ-YKKGDMLETVVLSIDAER 426
Query: 121 SRITLSIKQLEEDPLL 136
RI+L +KQLEEDP L
Sbjct: 427 ERISLGVKQLEEDPFL 442
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCTMNP 353
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
+ VSE+S + ++D L EGD V +I +DR+ ITLSIKQ
Sbjct: 478 LKVSEISRERVEDATTALKEGDSVEAAIINVDRKARTITLSIKQ 521
>gi|283778165|ref|YP_003368920.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM
6068]
gi|283436618|gb|ADB15060.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068]
Length = 502
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYG 68
L G I+ + +ANE +V S EK++ + + + + D+ G +D+G
Sbjct: 249 LVGQRITCVITEANERRGNVVLSRRAVLEREKESAKKELMASIAIGDMREGVVRKIQDFG 308
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ + DGL +H+S++SWD I+ +IL EG +VRV++ KID E +I LS++
Sbjct: 309 AFVDMGGIDGL------IHISQMSWDRIKHPSEILTEGQKVRVRIEKIDPETGKIGLSLR 362
Query: 129 QLEEDP 134
+E P
Sbjct: 363 NQQEHP 368
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFS---EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V++ + + E K+ S +++ W + V I G +GAF+ L
Sbjct: 340 GQKVRVRIEKIDPETGKIGLSLRNQQEHPWTGIDQKFPVGSIVKGTVSRLAAFGAFVKLS 399
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+H+SE++ + + +++++ EG EV VK++ + E RI+LS+K + P
Sbjct: 400 -----PGVEGLIHISELAHNRVYAVQNVVKEGQEVEVKILTVSAEDQRISLSLKATLQAP 454
>gi|88859273|ref|ZP_01133913.1| 30S ribosomal subunit protein S1 [Pseudoalteromonas tunicata D2]
gi|88818290|gb|EAR28105.1| 30S ribosomal subunit protein S1 [Pseudoalteromonas tunicata D2]
Length = 555
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIANPWQEFARLQNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNAPGEEAVRE-YKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + G+++ + + TIE G+
Sbjct: 428 RISLGVKQIESDPFNNYLDA--NKKGAIVKGKVTEVDAKGATIEISEGV 474
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ +++ ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIAGRYPEGSKLTGRITNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLETLE 140
G + V++++ + ++D ++ GDEV K + +DR+ ++LS+K L EE +LE L+
Sbjct: 476 GYIRVADIAQERVEDATTAVSVGDEVEAKYVGVDRKNRTLSLSVKALFEAEEKEVLEKLK 535
Query: 141 KVIPQ 145
K P+
Sbjct: 536 KEEPE 540
>gi|190574008|ref|YP_001971853.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia K279a]
gi|424668404|ref|ZP_18105429.1| ribosomal protein S1 [Stenotrophomonas maltophilia Ab55555]
gi|190011930|emb|CAQ45551.1| putative 30S ribosomal protein S1 [Stenotrophomonas maltophilia
K279a]
gi|401068666|gb|EJP77190.1| ribosomal protein S1 [Stenotrophomonas maltophilia Ab55555]
gi|456734286|gb|EMF59108.1| SSU ribosomal protein S1p [Stenotrophomonas maltophilia EPM1]
Length = 561
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIGRRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKGDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNFKKGDTLDAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIGRRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|414155463|ref|ZP_11411775.1| ribosomal protein S1 [Streptococcus sp. F0442]
gi|410873436|gb|EKS21371.1| ribosomal protein S1 [Streptococcus sp. F0442]
Length = 399
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E EK
Sbjct: 355 AQEEGEK 361
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|307151161|ref|YP_003886545.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306981389|gb|ADN13270.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 328
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 152 STREAKEDLVGQDLPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 212 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLST 265
Query: 128 KQLE 131
KQLE
Sbjct: 266 KQLE 269
>gi|168011566|ref|XP_001758474.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690509|gb|EDQ76876.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 67/114 (58%), Gaps = 11/114 (9%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE +LV S + A + + S + + VG + YGAFI +
Sbjct: 233 IPLKFLEVDEERTRLVLSNRKATFAENQSAFGIGSVVVGTVQTVKPYGAFIDIG------ 286
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+S++S D + + +L+ GD+++V ++ D+++ RI+LS K+LE P
Sbjct: 287 GVSGLLHISQISHDRLTTVETVLSPGDKLKVMILSQDKDRGRISLSTKKLEPTP 340
>gi|121727134|ref|ZP_01680308.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae V52]
gi|121630512|gb|EAX62904.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae V52]
Length = 355
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 3 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 56
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + + K P+
Sbjct: 57 GLKQLGEDPWV-AIAKRYPE 75
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 112 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 171
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 172 SITDFGIFIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAER 225
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 226 ERISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 273
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 88 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 141
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 142 SLGLKQCKANP 152
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 264 GATIELE--DGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 318
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 319 KAKDEAEEQEVMATLNK 335
>gi|152996867|ref|YP_001341702.1| 30S ribosomal protein S1 [Marinomonas sp. MWYL1]
gi|150837791|gb|ABR71767.1| ribosomal protein S1 [Marinomonas sp. MWYL1]
Length = 560
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + ++ P++ V + ++++
Sbjct: 258 GLKQLGEDPWV-AIKARYPENTKVTAKVTNLT 288
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K+IH G + V V+ +EE +++ K W ++++ N D G
Sbjct: 313 NKNIHPSKVVQIGDEVEVMVLDIDEERRRISLGIKQCTMNPWEEFATSFNKGDKISGAIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SWD + +R +GD + V+ ID E+
Sbjct: 373 SITDFGVFIGL---DG--GIDGLVHLSDLSWDETGEEAVRQ-YKKGDMLETVVLSIDAER 426
Query: 121 SRITLSIKQLEEDPLL 136
RI+L +KQLEEDP L
Sbjct: 427 ERISLGVKQLEEDPFL 442
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCTMNP 353
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
+ VSE+S + I+D L EGD+V +I +DR+ ITLSIKQ
Sbjct: 478 LKVSEISRERIEDATTALKEGDKVEAAIINVDRKARTITLSIKQ 521
>gi|372271285|ref|ZP_09507333.1| 30S ribosomal protein S1 [Marinobacterium stanieri S30]
Length = 560
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAFI L DGL H+T +++W I ++LN GDE+ VK+IK D+E +RI+L
Sbjct: 204 NYGAFIDLGGVDGLLHIT------DMAWKRISHPSEMLNPGDEISVKIIKFDKETNRISL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLSEDP 266
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 25/166 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K W +S + D G
Sbjct: 313 NKNIHPSKIVNIGDEVEVMILDVDEERRRISLGIKQCTANPWVSFSEQNAANDKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQDIRDILNEGDEVRVKVIKIDREK 120
D+G F+ L L GLVH+S++SW D +R +GDEV ++ ID EK
Sbjct: 373 TITDFGIFVGLD-----NDLDGLVHMSDISWEADPETALRQ-FKKGDEVEAVILSIDAEK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP 166
RI+L IKQLE DP E L +D S+ + ++EP
Sbjct: 427 ERISLGIKQLESDPFAEYL---------AANDKGSIVTGTVKSVEP 463
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G ISVK+I+ ++E ++ K D + ++Y + V DYG F +
Sbjct: 238 GDEISVKIIKFDKETNRISLGLKQLSEDPWDDIKDRYPAGTKVAARVTNLTDYGCFASIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+SW ++I I+N GDEV V ++ +D E+ RI+L IKQ
Sbjct: 298 --DGV---EGLVHVSEMSW-TNKNIHPSKIVNIGDEVEVMILDVDEERRRISLGIKQCTA 351
Query: 133 DPLLETLEKVIPQD 146
+P + E+ D
Sbjct: 352 NPWVSFSEQNAAND 365
>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
gi|385817537|ref|YP_005853927.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
Length = 403
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKVI + + ++ S K + + + ++ +N D+F G ++GAF+ +
Sbjct: 243 AGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLNEGDVFEGEVKSLTNFGAFVEV 302
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 --ADGI---QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|406959737|gb|EKD87007.1| hypothetical protein ACD_37C00076G0003 [uncultured bacterium]
Length = 343
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAF 70
Q +++ A+ G I+ V++ N + K++FS+K AV ++ S+ + G A
Sbjct: 134 QAILNDSAQSFLGKKINAIVLELNRALHKIIFSQKGAVGDEAFSKAT-SVVRSGEKVDAV 192
Query: 71 IHLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+ P G++ L G +H+SE+SWD + + G++++ +V+ ID++ R+ LS
Sbjct: 193 VSSTTPFGIFVSVKGLEGFIHLSELSWDKTETAENYFKVGEKIQAEVLGIDKDAKRVNLS 252
Query: 127 IKQLEEDPLLETLEKVIP 144
IK+L DP E + P
Sbjct: 253 IKRLTIDPFQEASKSFTP 270
>gi|222612339|gb|EEE50471.1| hypothetical protein OsJ_30517 [Oryza sativa Japonica Group]
Length = 341
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIGRRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
>gi|254524507|ref|ZP_05136562.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
gi|344207106|ref|YP_004792247.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia JV3]
gi|386718233|ref|YP_006184559.1| 30S ribosomal protein S1 [Stenotrophomonas maltophilia D457]
gi|408824025|ref|ZP_11208915.1| 30S ribosomal protein S1 [Pseudomonas geniculata N1]
gi|219722098|gb|EED40623.1| ribosomal protein S1 [Stenotrophomonas sp. SKA14]
gi|343778468|gb|AEM51021.1| ribosomal protein S1 [Stenotrophomonas maltophilia JV3]
gi|384077795|emb|CCH12384.1| SSU ribosomal protein S1p [Stenotrophomonas maltophilia D457]
Length = 561
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+KQL EDP + + + P + V S+++ + +E PG+
Sbjct: 259 GLKQLGEDP-WDNIGRRYPANSRVFGKVSNVTDYGA-FVEIEPGV 301
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDEVEVMVLDVDEERRRISLGMKQVAANPWETFAATHKKGDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW+ +D+ +GD + V+ +D E+ RI+L +KQLE+D
Sbjct: 385 --DG--GIDGLVHLSDISWNTTGEDVVRNFKKGDTLDAVVLAVDPERERISLGVKQLEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K + W+ R G+ DYGAF+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGEDPWDNIGRRYPANSRVFGKVSNVTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDEV V V+ +D E+ RI+L +KQ+ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPSKVVQVGDEVEVMVLDVDEERRRISLGMKQVAAN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|410623139|ref|ZP_11333958.1| small subunit ribosomal protein S1 [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410157340|dbj|GAC29332.1| small subunit ribosomal protein S1 [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 557
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 22/142 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K + W ++ D G+
Sbjct: 313 NKNIHPSKVVNLGDVVEVMVLEIDEERRRISLGLKQCIDNPWETFAKSHEKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKID 117
D+G FI L DG + GLVH+S++SW D ++D + +GDE+ V+++D
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWQKTGEDAVRDYK----KGDEISAVVLQVD 423
Query: 118 REKSRITLSIKQLEEDPLLETL 139
E+ RI+L +KQ+EEDP + L
Sbjct: 424 PERERISLGVKQIEEDPFNKYL 445
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 17/129 (13%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I+VKV++ ++E MK++ + N+Y + DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGARLSGAVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVEVMVLEIDEERRRISLGLKQCID 351
Query: 133 DPLLETLEK 141
+P ET K
Sbjct: 352 NP-WETFAK 359
>gi|335357280|ref|ZP_08549150.1| 30S ribosomal protein S1 [Lactobacillus animalis KCTC 3501]
Length = 397
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K++V E++A + S++ D+ G+ ++GAFI L DGL VHVSE+S
Sbjct: 178 KEIVQQEREAKKQEVMSQLAAGDVLDGKVARLTNFGAFIDLGGVDGL------VHVSEIS 231
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ + D+L G++V+VKV+ +D EK RI+LSIKQ P EKV +G V+
Sbjct: 232 YERVGKPSDVLKVGEDVKVKVLAVDPEKDRISLSIKQTLPQPWDNIEEKV--AEGDVLDG 289
Query: 153 SSSMSSSNSNTIEPLPGL 170
+S +E PG+
Sbjct: 290 KVKRLTSFGAFVEVFPGV 307
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E ++ S K + W+ +V D+ G+ +GAF+ +
Sbjct: 244 VGEDVKVKVLAVDPEKDRISLSIKQTLPQPWDNIEEKVAEGDVLDGKVKRLTSFGAFVEV 303
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I ++L G +V+VKV+ ++ R+ LSIK L+E
Sbjct: 304 -FP----GVEGLVHISQISHKHIATPNEVLTSGQDVKVKVLNVNGADRRLALSIKALQEK 358
Query: 134 P 134
P
Sbjct: 359 P 359
>gi|153819867|ref|ZP_01972534.1| 30S ribosomal protein S1, partial [Vibrio cholerae NCTC 8457]
gi|126509597|gb|EAZ72191.1| 30S ribosomal protein S1 [Vibrio cholerae NCTC 8457]
Length = 406
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+++R++L
Sbjct: 54 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSL 107
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 108 GLKQLGEDP 116
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE---DIFVGR-- 65
K+IH G + V V+ +EE +++ K N + S + D G+
Sbjct: 163 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAKGDKVTGKIK 222
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDE+ V+ +D E+
Sbjct: 223 SITDFGIFIGLEGG-----IDGLVHLSDISWNVPGEEAVRE-FKKGDEISAVVLAVDAER 276
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQ+E DP + + G++++ + + + TIE G+
Sbjct: 277 ERISLGIKQMENDPFNAYVSD--NKKGALVNGTVTAVDAKGATIELEDGV 324
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 139 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRI 192
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 193 SLGLKQCKANP 203
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L DG+ G + SEVS D I+D ILN GD+V K +DR+ I LSI
Sbjct: 315 GATIEL--EDGV---EGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSI 369
Query: 128 K---QLEEDPLLETLEK 141
K + EE ++ TL K
Sbjct: 370 KAKDEAEEQEVMATLNK 386
>gi|339624198|ref|ZP_08659987.1| SSU ribosomal protein S1P [Fructobacillus fructosus KCTC 3544]
Length = 396
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 22/151 (14%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGL 79
I+S K + A E +KL + SR+ V ++ G D+GAF+ L DGL
Sbjct: 172 ILSRKAVAAQERAEKL---------QEAFSRLTVGEVVEGTVARLTDFGAFVDLGGVDGL 222
Query: 80 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
VHVSE+S D +++ D+L++G++V VK++ +D E+ RI+LSIK + P E
Sbjct: 223 ------VHVSEISHDRVKNPADVLSKGEKVNVKILALDTERGRISLSIKATQPGPWDEFA 276
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
EK G+V+ + +E PG+
Sbjct: 277 EKAPA--GTVLEGTVKRVKDFGAFVEIFPGI 305
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VK++ + E ++ S K W++++ + + G +D+GAF+ +
Sbjct: 243 GEKVNVKILALDTERGRISLSIKATQPGPWDEFAEKAPAGTVLEGTVKRVKDFGAFVEI- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVHVS++S +++ D+L GD+V+V+V+ + ++ RI+LS+K LEE P
Sbjct: 302 FP----GIEGLVHVSQISHKRVENPADVLKSGDKVKVQVLDVKPQEERISLSMKALEEKP 357
>gi|332288796|ref|YP_004419648.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
gi|330431692|gb|AEC16751.1| 30S ribosomal protein S1 [Gallibacterium anatis UMN179]
Length = 549
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K DR+++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPGEIVNVGDEVTVKVLKFDRDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSVGDEVEVMVLEIDEERRRISLGLKQCKPNPWQQFADTHNKGDKVSGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+++D K
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNVPGEEAVRN-YKKGDEVEAIVLQVDAAKE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
RI+L IKQLEEDP + I + GSV+S
Sbjct: 428 RISLGIKQLEEDPFNNFVS--INKKGSVVS 455
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GDEV V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGIEGLVHVSEMDW-TNKNIHPSKVVSVGDEVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKPNP 353
>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
Length = 555
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 22/153 (14%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNV 58
M SH +P K++ + G KV++ N+E K +V S ++ + + S R +
Sbjct: 124 MPASHIDIQPPKNLDQ----YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLL 179
Query: 59 EDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
E I G+ D+GAFI L DG+ GL+H++++SW I ++L +G+E
Sbjct: 180 ESIQPGQVRKGVVKNITDFGAFIDL---DGM---DGLLHITDMSWGRIAHPSEMLKQGEE 233
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
++V +I+++R+K R++L +KQ ++P E +K
Sbjct: 234 IQVMIIEVNRDKERVSLGLKQTTKNPWDEIEQK 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 10/91 (10%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+ S + D+ G +GAF+ L+ DG+ GLVH+S++S + I+ ++D+L
Sbjct: 434 WSDIDSFFKIGDVVKGTVTKITSFGAFVDLK--DGI---DGLVHISQISEERIEKVKDVL 488
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
G EV +VIKIDR++ R+ LSIK P
Sbjct: 489 KPGQEVTARVIKIDRDERRLGLSIKAANYSP 519
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI L + G+VHVS++SW + ++L +GDEV V+ +D + RI+L
Sbjct: 370 YGAFIELE-----EGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQRISL 424
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 425 GMKQLAVDP 433
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V +I+ N + +++ K W++ + V G+ YGAFI +
Sbjct: 231 GEEIQVMIIEVNRDKERVSLGLKQTTKNPWDEIEQKFPVGTKIHGKVVNLVPYGAFIEIE 290
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH++E+SW I ++L G E+ V+ I +E +I+L ++QLE +
Sbjct: 291 -----PGVEGLVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPN 345
Query: 134 P 134
P
Sbjct: 346 P 346
>gi|348029200|ref|YP_004871886.1| 30S ribosomal protein S1 [Glaciecola nitratireducens FR1064]
gi|347946543|gb|AEP29893.1| 30S ribosomal protein S1 [Glaciecola nitratireducens FR1064]
Length = 556
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 22/142 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K + W ++ D G+
Sbjct: 313 NKNIHPSKVVNLGDVVEVMVLEIDEERRRISLGLKQCIDNPWETFAKSHEKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKID 117
D+G FI L DG + GLVH+S++SW D ++D + +GDE+ V+++D
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWQKTGEDAVRDYK----KGDEISAVVLQVD 423
Query: 118 REKSRITLSIKQLEEDPLLETL 139
E+ RI+L +KQ++EDP + L
Sbjct: 424 PERERISLGVKQIDEDPFNKYL 445
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 17/129 (13%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I+VKV++ ++E MK++ + N+Y + DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGAKLSGAVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVEVMVLEIDEERRRISLGLKQCID 351
Query: 133 DPLLETLEK 141
+P ET K
Sbjct: 352 NP-WETFAK 359
>gi|319947109|ref|ZP_08021343.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
gi|417920297|ref|ZP_12563809.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
gi|319747157|gb|EFV99416.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
gi|342829948|gb|EGU64289.1| 30S ribosomal protein S1 [Streptococcus australis ATCC 700641]
Length = 399
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLEVNAADERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E EK
Sbjct: 355 AQEEGEK 361
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|110589224|gb|ABG77121.1| 30S ribosomal subunit protein S1 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 283
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYG 68
L G + KVI+ + +V S + V +YS+ +E++ G+ DYG
Sbjct: 71 LEGKDLEFKVIKLDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQELKGVVKNLTDYG 130
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ D++ GDE+ VKV+K DRE++R++L +K
Sbjct: 131 AFVDLGGIDGLLHIT------DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLK 184
Query: 129 QLEEDPLLETLEKVIPQ 145
Q+ +DP + L + P+
Sbjct: 185 QMGDDPWV-ALARRYPE 200
>gi|359435070|ref|ZP_09225300.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20652]
gi|357918283|dbj|GAA61549.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20652]
Length = 555
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIANPWQEFARLQNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEEAVRE-FKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + G+++ + + T+E + G+
Sbjct: 428 RISLGVKQIEADPFNNYLDA--NKKGAIVKGKVTEVDAKGATVELIEGV 474
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ +++ ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIAGRYPEGSKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLETLE 140
G + V++++ + ++D +++ GDE+ VK + +DR+ ++LS+K L EE ++E L+
Sbjct: 476 GYIRVADIAQERVEDATTVVSVGDEIEVKYVGVDRKNRTLSLSVKALFEAEEKEVIEKLK 535
Query: 141 KVIP 144
K P
Sbjct: 536 KEEP 539
>gi|119471943|ref|ZP_01614228.1| 30S ribosomal protein S1 [Alteromonadales bacterium TW-7]
gi|359451684|ref|ZP_09241082.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20480]
gi|392539067|ref|ZP_10286204.1| 30S ribosomal protein S1 [Pseudoalteromonas marina mano4]
gi|119445201|gb|EAW26492.1| 30S ribosomal protein S1 [Alteromonadales bacterium TW-7]
gi|358042506|dbj|GAA77331.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20480]
Length = 555
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIANPWQEFARLQNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEEAVRE-FKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + G+++ + + T+E + G+
Sbjct: 428 RISLGVKQIEADPFNNYLDA--NKKGAIVKGKVTEVDAKGATVELIEGV 474
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ +++ ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIAGRYPEGSKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLETLE 140
G + V++++ + ++D +++ GDEV VK + +DR+ ++LS+K L EE +LE L+
Sbjct: 476 GYIRVADIAQERVEDATTVVSVGDEVEVKYVGVDRKNRTLSLSVKALFEAEEKEVLEKLK 535
Query: 141 KVIP 144
K P
Sbjct: 536 KEEP 539
>gi|377556031|ref|ZP_09785754.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
gi|376168769|gb|EHS87497.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
Length = 409
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G + K+++ +L+ S K+ V +++ + D+ G+ ++G
Sbjct: 156 FKGQELEFKIVEIEPSENRLILSHKEIVQEQHAEAAAKIFGELAPGDVVEGKVARMTNFG 215
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL VHVSE+S+D + D+L G++V+VKV+ +D E+ RI+LSIK
Sbjct: 216 AFIDLGGVDGL------VHVSEISYDHVDKPADVLEVGEDVKVKVLSVDPERERISLSIK 269
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
Q P + +E PQ G+V++ + +S +E PG+
Sbjct: 270 QTLPGP-WDDIESKAPQ-GTVLTGTVKRLTSFGAFVEVFPGV 309
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K + W+ S+ + G +GAF+ +
Sbjct: 247 GEDVKVKVLSVDPERERISLSIKQTLPGPWDDIESKAPQGTVLTGTVKRLTSFGAFVEV- 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I D+L G+EV+VKV+ ++ +K R+ LSIK L+E P
Sbjct: 306 FPG----VEGLVHISQISHKHIATPADVLKVGEEVQVKVLNVEADKQRLGLSIKALQEAP 361
>gi|392428718|ref|YP_006469729.1| 30S ribosomal protein S1 [Streptococcus intermedius JTH08]
gi|419776707|ref|ZP_14302629.1| S1 RNA binding domain protein [Streptococcus intermedius SK54]
gi|423070410|ref|ZP_17059186.1| hypothetical protein HMPREF9177_00503 [Streptococcus intermedius
F0413]
gi|424787708|ref|ZP_18214472.1| S1 RNA binding domain protein [Streptococcus intermedius BA1]
gi|355365771|gb|EHG13491.1| hypothetical protein HMPREF9177_00503 [Streptococcus intermedius
F0413]
gi|383846118|gb|EID83518.1| S1 RNA binding domain protein [Streptococcus intermedius SK54]
gi|391757864|dbj|BAM23481.1| 30S ribosomal protein S1 [Streptococcus intermedius JTH08]
gi|422113462|gb|EKU17200.1| S1 RNA binding domain protein [Streptococcus intermedius BA1]
Length = 399
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
+ E +K
Sbjct: 355 VQEDEQK 361
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S++ V DI G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 SKLAVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|410635047|ref|ZP_11345667.1| small subunit ribosomal protein S1 [Glaciecola lipolytica E3]
gi|410145384|dbj|GAC12872.1| small subunit ribosomal protein S1 [Glaciecola lipolytica E3]
Length = 558
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGSDPWQE 269
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ D G+
Sbjct: 313 NKNIHPSKVVNLGDVVEVMVLEIDEERRRISLGLKQCKANPWEEFAKSHEKNDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEDAVREYKKGDEISAVVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETL 139
RI+L +KQ+EEDP + L
Sbjct: 428 RISLGVKQIEEDPFNKYL 445
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G I+VKV++ ++E ++ K W + ++R G DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKSRVSLGMKQMGSDPWQEIANRYPEGSKLSGAVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVEVMVLEIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|157738252|ref|YP_001490936.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
gi|157700106|gb|ABV68266.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
Length = 550
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLR 74
G I+V+VI+ N E K+L S K+ ++ VN V D+ G+ D+GAF+++
Sbjct: 330 GDEINVEVIELNVEQKRLRVSLKNLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVNIG 389
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DGL +H E SW+ + + +GDEV V++IKID+EK I+LSIK + + P
Sbjct: 390 DVDGL------LHNEEASWESNAKCKSLFKKGDEVEVRIIKIDKEKENISLSIKDISDSP 443
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV-----GRDYGAFIHLR 74
G +SV V+ ++ + L S K A+ W + ++ V D YGAF+ L
Sbjct: 243 GDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQLEVGDTITVTVSNFESYGAFVDLG 302
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+H+SE+SW+ +++ +++L GDE+ V+VI+++ E+ R+ +S+K L+E
Sbjct: 303 -----NDIEGLLHISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEK 357
Query: 134 PL 135
P
Sbjct: 358 PF 359
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 18 AKGLTGSIISVKVIQANEEM-------KKLVFSEKDAVWNKYSSRVNVEDIFVGR----- 65
+G G + KVI+ N+ KKL+ K+ NK + + ++ G
Sbjct: 149 TQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIEESKNIKDNKVAEILEKKEAINGTIKKIT 208
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YG F+ L DGL V+ +E+S+ + + NEGDEV V V+ D+ K ++L
Sbjct: 209 SYGMFVDLGGIDGL------VNYNEISYKGPVNPANYYNEGDEVSVVVLAYDKAKQHLSL 262
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179
SIK +P E +D + D+ +++ SN + LG E LL
Sbjct: 263 SIKAALSNPWKEI------KDQLEVGDTITVTVSNFESYGAFVDLGNDIEGLLH 310
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 25/143 (17%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V++I+ ++E + + S KD + ++ + DI G +D+G FI L
Sbjct: 415 GDEVEVRIIKIDKEKENISLSIKDISDSPAKRFQDAYKLGDIVKGPVKDIKDFGIFIKLE 474
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+L GL+ + D D + GDE+ +I ID +K+R+ LS+++LE+
Sbjct: 475 -----NNLDGLIR----NEDFGPLKADEVKNGDEIEAVIINIDTKKNRVRLSVRRLEQQQ 525
Query: 135 LLETLEKVIPQDGSVISDSSSMS 157
E L+ V +D +SM+
Sbjct: 526 EREVLKSV--------NDDTSMT 540
>gi|315126548|ref|YP_004068551.1| 30S ribosomal protein S1 [Pseudoalteromonas sp. SM9913]
gi|332534571|ref|ZP_08410406.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis ANT/505]
gi|359439177|ref|ZP_09229156.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20311]
gi|359441569|ref|ZP_09231462.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20429]
gi|359445442|ref|ZP_09235178.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20439]
gi|359456192|ref|ZP_09245380.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20495]
gi|392532806|ref|ZP_10279943.1| 30S ribosomal protein S1 [Pseudoalteromonas arctica A 37-1-2]
gi|392555433|ref|ZP_10302570.1| 30S ribosomal protein S1 [Pseudoalteromonas undina NCIMB 2128]
gi|414070329|ref|ZP_11406315.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. Bsw20308]
gi|315015062|gb|ADT68400.1| 30S ribosomal protein S1 [Pseudoalteromonas sp. SM9913]
gi|332035991|gb|EGI72470.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis ANT/505]
gi|358026213|dbj|GAA65405.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20311]
gi|358036589|dbj|GAA67711.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20429]
gi|358040719|dbj|GAA71427.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20439]
gi|358046752|dbj|GAA81629.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. BSi20495]
gi|410807246|gb|EKS13226.1| small subunit ribosomal protein S1 [Pseudoalteromonas sp. Bsw20308]
Length = 555
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIANPWQEFARLQNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEEAVRE-FKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + G+++ + + T+E + G+
Sbjct: 428 RISLGVKQIEADPFNNYLDA--NKKGAIVKGKVTEVDAKGATVELIEGV 474
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ +++ ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIAGRYPEGSKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLETLE 140
G + V++++ + ++D +++ GDE+ VK + +DR+ ++LS+K L EE +LE L+
Sbjct: 476 GYIRVADIAQERVEDATTVVSVGDEIEVKYVGVDRKNRTLSLSVKALFEAEEKEVLEKLK 535
Query: 141 KVIP 144
K P
Sbjct: 536 KEEP 539
>gi|307545306|ref|YP_003897785.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
gi|307217330|emb|CBV42600.1| 30S ribosomal protein S1 [Halomonas elongata DSM 2581]
Length = 559
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDEV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEVNVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 102
W ++++ N D G D+G FI L + GLVH+S++SW + ++
Sbjct: 354 WETFNAQYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTEGGEEAVRQ 408
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
+GDE ++ ID E+ RI+L IKQL+ DP+ E L + GS+++
Sbjct: 409 FKKGDEAEAVILSIDPERERISLGIKQLDTDPVAEFL--AVNDKGSIVT 455
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ ++ SE+S D ++D R++LNEGD V +++ +DR+ +I LS+K +++ + K
Sbjct: 474 VVAVLKASEISADRVEDARNVLNEGDSVEARIVGVDRKNRQINLSVKAKDQEDTRRNMSK 533
Query: 142 VIPQD 146
+ QD
Sbjct: 534 LRDQD 538
>gi|325578217|ref|ZP_08148352.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
gi|325159953|gb|EGC72082.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae ATCC 33392]
Length = 549
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLE+DP + + + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEDDPFNNFV--AVNKKGAVVSATVVEADAKGAKVELAGGI 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|345430060|ref|YP_004823180.1| 30S ribosomal protein S1 [Haemophilus parainfluenzae T3T1]
gi|301156123|emb|CBW15594.1| 30S ribosomal subunit protein S1 [Haemophilus parainfluenzae T3T1]
Length = 549
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLE+DP + + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEDDPFNNFVANT--KKGAVVSATVVEADAKGAKVELAGGV 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|410612211|ref|ZP_11323291.1| small subunit ribosomal protein S1 [Glaciecola psychrophila 170]
gi|410168212|dbj|GAC37180.1| small subunit ribosomal protein S1 [Glaciecola psychrophila 170]
Length = 556
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W +++ + D G+
Sbjct: 313 NKNIHPSKVVNLGDVCEVMVLEIDEERRRISLGLKQCIPNPWEEFAKAQSKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ ++ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEEAVSDYKKGDEISAVVLQVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQ+EEDP
Sbjct: 428 RISLGVKQIEEDPF 441
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I+VKV++ ++E MK++ + N+Y + DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGAKLSGAVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V++ID E+ RI+L +KQ
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVCEVMVLEIDEERRRISLGLKQCIP 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|406905815|gb|EKD47166.1| RNA binding S1 protein [uncultured bacterium]
Length = 408
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 17/141 (12%)
Query: 14 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVW----NKYSSRVNVEDIFVG----- 64
I E K G+ + V ++ N E +KL+ SEK +W S++ + DI G
Sbjct: 157 ILEKLKDFIGNKVRVHILDLNTEEEKLIVSEK-TIWEDEQKNVISKIAIGDIIEGDITAL 215
Query: 65 RDYGAFIHLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120
D+GAF+ P G+ L GLVH+SE++W I +D+L G V+ ++I ID
Sbjct: 216 ADFGAFVKF-LPKGVTDPAGALEGLVHISEIAWQRIDHPKDLLKTGQTVKAEIIGID--G 272
Query: 121 SRITLSIKQLEEDPLLETLEK 141
S+I LS+K+L+ DP ++ K
Sbjct: 273 SKIFLSMKKLKSDPWVDVENK 293
>gi|410630753|ref|ZP_11341440.1| small subunit ribosomal protein S1 [Glaciecola arctica BSs20135]
gi|410149719|dbj|GAC18307.1| small subunit ribosomal protein S1 [Glaciecola arctica BSs20135]
Length = 556
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EKSR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKSRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W +++ + D G+
Sbjct: 313 NKNIHPSKVVNLGDVCEVMVLEIDEERRRISLGLKQCIPNPWEEFAKAQSKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +RD +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKTGEEAVRD-YKKGDEISAVVLQVDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQ+EEDP
Sbjct: 427 ERISLGVKQIEEDPF 441
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I+VKV++ ++E MK++ + N+Y + DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKSRVSLGMKQMGNDPWQEIANRYPEGAKLSGAVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V++ID E+ RI+L +KQ
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVCEVMVLEIDEERRRISLGLKQCIP 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|419802506|ref|ZP_14327692.1| ribosomal protein S1 [Haemophilus parainfluenzae HK262]
gi|385190066|gb|EIF37516.1| ribosomal protein S1 [Haemophilus parainfluenzae HK262]
Length = 549
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLE+DP + + + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEDDPFNNFV--AVNKKGAVVSATVVEADAKGAKVELAGGI 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|419844810|ref|ZP_14368097.1| ribosomal protein S1 [Haemophilus parainfluenzae HK2019]
gi|386416736|gb|EIJ31228.1| ribosomal protein S1 [Haemophilus parainfluenzae HK2019]
Length = 549
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEVDEERRRISLGLKQCKPNPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLE+DP + + + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEDDPFNNFV--AVNKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEVDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|92114285|ref|YP_574213.1| 30S ribosomal protein S1 [Chromohalobacter salexigens DSM 3043]
gi|91797375|gb|ABE59514.1| SSU ribosomal protein S1P [Chromohalobacter salexigens DSM 3043]
Length = 559
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDEV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEVNVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 16/150 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +S+R N D G
Sbjct: 313 NKNIHPSKVVQVGDDVEVMVLDIDEERRRISLGIKQCTTNPWEDFSARYNKGDRVAGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + ++ +GDE ++ ID E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWSEPGEEAVRKFKKGDEAEAVILSIDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
RI+L IKQLE DP+ E L + GSV++
Sbjct: 428 RISLGIKQLETDPVSEYL--AVNDKGSVVT 455
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G ++VKV++ + E ++ K + ++Y ++RVN + DYG F L
Sbjct: 238 GDEVNVKVLKFDRERNRVSLGLKQLGEDPWVNIKDRYPENTRVNAR-VTNLTDYGCFAEL 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++ GD+V V V+ ID E+ RI+L IKQ
Sbjct: 297 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDDVEVMVLDIDEERRRISLGIKQCT 350
Query: 132 EDP 134
+P
Sbjct: 351 TNP 353
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ ++ SE+S D ++D R++L+EGD V K++ +DR+ I LS+K ++ + K
Sbjct: 474 VVAVLKASEISADRVEDARNVLSEGDSVEAKIVGVDRKNRAINLSVKAKDQTDTRRAMGK 533
Query: 142 VIPQDG 147
+ Q+
Sbjct: 534 LRDQEA 539
>gi|77360368|ref|YP_339943.1| 30S ribosomal protein S1 [Pseudoalteromonas haloplanktis TAC125]
gi|76875279|emb|CAI86500.1| 30S ribosomal subunit protein S1; site specific RNA helicase;
component of the degradosome [Pseudoalteromonas
haloplanktis TAC125]
Length = 555
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIAVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K + W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLKQCIANPWQEFARLQNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSR 122
D+G FI L DG + GLVH+S++SW+ +D +GDE+ V+++D E+ R
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNTPGEDAVREFKKGDEITAIVLQVDPERER 428
Query: 123 ITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
I+L +KQ+E DP L+ + G+++ + + TIE + G+
Sbjct: 429 ISLGVKQIEADPFNNYLDA--NKKGAIVKGKVTEVDAKGATIELIEGV 474
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ +++ ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEIAVKVLKFDKDKTRVSLGLKQLGEDPWAAIAGRYPEGSKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DPLLE 137
+P E
Sbjct: 352 NPWQE 356
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L + + G + V++++ + ++D +++ GDE+ VK + +DR+ ++LS+
Sbjct: 465 GATIEL-----IEGVEGYIRVADIAQERVEDATTVVSVGDEIEVKYVGVDRKNRTLSLSV 519
Query: 128 KQL---EEDPLLETLEKVIP 144
K L EE ++E L+K P
Sbjct: 520 KALFEAEEKEVIEKLKKDEP 539
>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
Length = 405
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVGR-----DYGAF 70
G I K+I+ N +L+ S +D + + S+ ++V D+ G+ ++GAF
Sbjct: 157 GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARIFDELSVGDVIEGKVARMTNFGAF 216
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL VHVSE+S + + D+L+ G+EV+VKV+ +D E+ RI+LSIK
Sbjct: 217 IDLGGVDGL------VHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P EK P G+V+ + +E PG+
Sbjct: 271 QPGPWDAAAEKA-PA-GTVLEGTVKRVVDFGAFVEVFPGV 308
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 13/123 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K W+ + + + G D+GAF+ +
Sbjct: 246 GEEVKVKVLGLDPERERISLSIKATQPGPWDAAAEKAPAGTVLEGTVKRVVDFGAFVEV- 304
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVHVS++S I + D+L GD+V+VKV+ ++ E+ R++LSIK LEE P
Sbjct: 305 FP----GVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSIKALEEAP 360
Query: 135 LLE 137
E
Sbjct: 361 AHE 363
>gi|386814531|ref|ZP_10101749.1| ribosomal protein S1 [Thiothrix nivea DSM 5205]
gi|386419107|gb|EIJ32942.1| ribosomal protein S1 [Thiothrix nivea DSM 5205]
Length = 555
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 71/121 (58%), Gaps = 18/121 (14%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDIFVGR----------DYGAFIHL 73
+ K+I+ +++ +V S + V +YS+ +E++ G+ DYGAF+ L
Sbjct: 152 LEFKLIKLDQKRNNVVVSRRAVVEEEYSAEREALMENLQEGQVVKGIVKNLTDYGAFLDL 211
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL H+T +++W ++ +++N GDE+ VKV+K DR+K+R++L +KQL ED
Sbjct: 212 GGIDGLLHIT------DMAWKRVKHPSEVVNIGDEIDVKVLKFDRDKNRVSLGLKQLGED 265
Query: 134 P 134
P
Sbjct: 266 P 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ + E +++ K W+++++ N D G+ D+G FI L
Sbjct: 325 GDEVEVMILDIDAERRRISLGMKQCQPNPWDEFAANHNKGDRVSGKIKSITDFGIFIGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GLVH+S++SW++ + +R +GDEV V+ +D E+ RI+L IKQ+E+
Sbjct: 384 --DG--GIDGLVHLSDISWNMPGEEAVRS-YKKGDEVEAVVLAVDPERERISLGIKQMEQ 438
Query: 133 DPL 135
DP
Sbjct: 439 DPF 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYG F+ + DG+ GLVHVSE+ W + + ++ GDEV V ++ ID E+ RI+
Sbjct: 289 DYGCFVEIE--DGV---EGLVHVSEMDWTNKNVNPAKVVTLGDEVEVMILDIDAERRRIS 343
Query: 125 LSIKQLEEDP 134
L +KQ + +P
Sbjct: 344 LGMKQCQPNP 353
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE+S D ++D R +L EGD + K + +DR+ I LSIK +++
Sbjct: 474 IEGILRASELSRDRVEDARTLLKEGDTIEAKFMGVDRKTRSINLSIKAKDDE-------- 525
Query: 142 VIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
++ V+ + + S S + LG IF+E + E
Sbjct: 526 ---EEARVMREYTGRSGGASTS------LGDIFKEQMGE 555
>gi|383784774|ref|YP_005469344.1| 30S ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
gi|383083687|dbj|BAM07214.1| ribosomal protein S1 [Leptospirillum ferrooxidans C2-3]
Length = 585
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR----------DYG 68
L G I V++I+ N++ ++ S + + W +V ++ + G DYG
Sbjct: 163 LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEVLEGIVKNITDYG 222
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H++++SW + + +D++N GD++ V V+K DR+ R++L +K
Sbjct: 223 AFIDLGGIDGL------LHITDMSWGRVSNPQDLMNVGDKLNVVVLKHDRDTGRVSLGLK 276
Query: 129 QLEEDP 134
QL DP
Sbjct: 277 QLSADP 282
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 20/143 (13%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVN 57
MS +H K P K ++ G ++ +V++ +E+ +K+ K W+ R
Sbjct: 325 MSWNHEVKHPSKIMN------VGDVVEARVLKIDEKNRKISLGLKQLGPNPWDSVEERYP 378
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRV 111
+ + G+ D+GAF+ L + GL+H+S++SW ++ ++ +G +V V
Sbjct: 379 IGTVVSGKVKSLTDFGAFVGLD-----EGIDGLIHISDMSWTKHVRHPSELFKKGQKVEV 433
Query: 112 KVIKIDREKSRITLSIKQLEEDP 134
V+KI++E+ R++L KQL +DP
Sbjct: 434 AVLKIEKERQRLSLGFKQLSQDP 456
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GL+HV+E+SW+ ++ I+N GD V +V+KID + +I+
Sbjct: 305 DYGAFLEIE-----PGVEGLMHVTEMSWNHEVKHPSKIMNVGDVVEARVLKIDEKNRKIS 359
Query: 125 LSIKQLEEDPLLETLEKVIPQDGSVIS 151
L +KQL +P +++E+ P G+V+S
Sbjct: 360 LGLKQLGPNP-WDSVEERYPI-GTVVS 384
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WN-----KYSSRVNVEDIFVG-RDYGAFIHL 73
G + V V++ +E ++L K W+ +++ V+V+ + D+G F+ L
Sbjct: 428 GQKVEVAVLKIEKERQRLSLGFKQLSQDPWDSEIPERFAVGVSVDGVITKVMDFGFFVEL 487
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSEV + Q + G + V+VIK+D + +I LS+K + E
Sbjct: 488 --AEGV---EGLVHVSEVDIESGQRLDQSYQVGSTISVRVIKLDPAERKIGLSVKPMPE 541
>gi|261492540|ref|ZP_05989093.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495207|ref|ZP_05991669.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452745256|ref|ZP_21945092.1| 30S ribosomal protein S1 [Mannheimia haemolytica serotype 6 str.
H23]
gi|261309132|gb|EEY10373.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311699|gb|EEY12849.1| ribosomal protein S1 [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452086649|gb|EME03036.1| 30S ribosomal protein S1 [Mannheimia haemolytica serotype 6 str.
H23]
Length = 555
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDEV VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 16/116 (13%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V++ +EE +++ K W ++++ + D G+ D+G FI L
Sbjct: 332 VLEVDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLE-----GG 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+S++SW++ + +R+ +GDEV V+++D K RI+L IKQLE DP
Sbjct: 387 IDGLVHLSDISWNVSGEEAVRN-YKKGDEVEAVVLQVDAVKERISLGIKQLESDPF 441
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I ++N GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLEVDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|258545130|ref|ZP_05705364.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
gi|258519649|gb|EEV88508.1| 30S ribosomal protein S1 [Cardiobacterium hominis ATCC 15826]
Length = 556
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-----NVEDIFVGR-------DYGAF 70
G I K+I+ +++ +V S + + N+Y + N+++ V + DYGAF
Sbjct: 148 GKEIDFKIIKLDQKRNNIVISRRAVLENEYKAERDEVLKNLQEGDVVKAVVKNLTDYGAF 207
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL H+T +++W I+ +++N GDEV VKV+K DRE++R++L +KQL
Sbjct: 208 LDIGGVDGLLHIT------DMAWKRIKYPSEVVNIGDEVEVKVLKFDRERARVSLGLKQL 261
Query: 131 EEDP 134
DP
Sbjct: 262 GSDP 265
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E ++ K W + R V G+ DYG+F+ +
Sbjct: 237 GDEVEVKVLKFDRERARVSLGLKQLGSDPWGDIAQRYPVNSQTRGKVTNIADYGSFVEIE 296
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+ W + + R + G EV V +++ID E+ RI+L +KQ + +
Sbjct: 297 --DGV---EGLVHVSEMDWTNKNVNPRKFVAVGQEVDVMILEIDPERRRISLGMKQCQPN 351
Query: 134 PLLE 137
P E
Sbjct: 352 PWQE 355
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V +++ + E +++ K W ++ + N D G+ D+G FI L
Sbjct: 324 GQEVDVMILEIDPERRRISLGMKQCQPNPWQEFEKKFNKGDRVKGQIKSITDFGVFIGLE 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GL+H+S++SWD + +R +G EV ++ ID E+ RI+L +KQL +
Sbjct: 384 -----GGIDGLIHLSDLSWDENGEEAVRH-YQKGQEVEAVILAIDAERERISLGVKQLSQ 437
Query: 133 DPL 135
D
Sbjct: 438 DTF 440
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE + + ++D+ +L+ GDEV KVI +DR+ +LS++ K
Sbjct: 473 INGILKASEAAIERVEDLTKLLSVGDEVEAKVINVDRKHKTFSLSVRA-----------K 521
Query: 142 VIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQED 181
+ + +VI D + S + LG IF+EL D
Sbjct: 522 DVADEKAVIQDYTRKESHGGTS------LGDIFKELGNSD 555
>gi|254361237|ref|ZP_04977380.1| ribosomal protein S1 [Mannheimia haemolytica PHL213]
gi|153092733|gb|EDN73776.1| ribosomal protein S1 [Mannheimia haemolytica PHL213]
Length = 555
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDEV VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 16/116 (13%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V++ +EE +++ K W ++++ + D G+ D+G FI L
Sbjct: 332 VLEVDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLE-----GG 386
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+S++SW++ + +R+ +GDEV V+++D K RI+L IKQLE DP
Sbjct: 387 IDGLVHLSDISWNVSGEEAVRN-YKKGDEVEAVVLQVDAVKERISLGIKQLESDPF 441
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I ++N GD V V V+++D E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLEVDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|119897363|ref|YP_932576.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
gi|119669776|emb|CAL93689.1| 30S ribosomal protein S1 [Azoarcus sp. BH72]
Length = 568
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++LN GDE+ KV+K D+EK+R++L
Sbjct: 212 DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLNVGDEIEAKVLKFDQEKNRVSL 265
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 266 GLKQLGEDP 274
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V +++ +E+ +++ K W+ ++ D G+
Sbjct: 321 NKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCASNPWDDFAINHKKGDKVRGQIK 380
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW + +D +GDEV V+ ID E+
Sbjct: 381 SITDFGVFIGL---DG--GIDGLVHLSDLSWSESGEDAVRKFKKGDEVEAVVLAIDVERE 435
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE DP
Sbjct: 436 RISLGIKQLEGDPF 449
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI
Sbjct: 297 DYGAFVEVE-----QGIEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRI 350
Query: 124 TLSIKQLEEDP 134
+L +KQ +P
Sbjct: 351 SLGMKQCASNP 361
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE + + D+ +L EGDE+ + +I +DR+ I LSI+ ++ E ++K
Sbjct: 484 GYLRASEAAPHRVDDLTTMLKEGDELELMIINVDRKTRSINLSIRAKDQAEQTEAMQK-- 541
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
++ SS +S +N LGA+ + L E
Sbjct: 542 ------LASESSAASGTTN-------LGALLKAKLNE 565
>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
gi|384156568|ref|YP_005539383.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
gi|345470122|dbj|BAK71573.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
Length = 550
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 14/120 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-----DYGAFIHLR 74
G I+V+VI+ N E K+L S K+ ++ VN V D+ G+ D+GAF+++
Sbjct: 330 GDEINVEVIELNVEQKRLRVSLKNLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVNIG 389
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DGL +H E SW+ + + +GDEV V++IKID+EK I+LSIK + + P
Sbjct: 390 DVDGL------LHNEEASWESNAKCKTLFKKGDEVEVRIIKIDKEKENISLSIKDISDSP 443
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV-----GRDYGAFIHLR 74
G +SV V+ ++ + L S K A+ W + ++ V D YGAF+ L
Sbjct: 243 GDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQLEVGDTITVTVSNFESYGAFVDLG 302
Query: 75 FPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+H+SE+SW+ +++ +++L GDE+ V+VI+++ E+ R+ +S+K L+E
Sbjct: 303 -----NDIEGLLHISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEK 357
Query: 134 PL 135
P
Sbjct: 358 PF 359
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 18 AKGLTGSIISVKVIQANEEM-------KKLVFSEKDAVWNKYSSRVNVEDIFVGR----- 65
+G G + KVI+ N+ KKL+ K+ NK + + ++ G
Sbjct: 149 TQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIEESKNIKDNKVAEILEKKEAINGTIKKIT 208
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YG F+ L DGL V+ +E+S+ + + NEGDEV V V+ D+ K ++L
Sbjct: 209 SYGMFVDLGGIDGL------VNYNEISYKGPVNPANYYNEGDEVSVVVLAYDKAKQHLSL 262
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179
SIK +P E +D + D+ +++ SN + LG E LL
Sbjct: 263 SIKAALSNPWKEI------KDQLEVGDTITVTVSNFESYGAFVDLGNDIEGLLH 310
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 25/143 (17%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V++I+ ++E + + S KD + ++ + DI G +D+G FI L
Sbjct: 415 GDEVEVRIIKIDKEKENISLSIKDISDSPAKRFQDAYKLGDIVKGPVKDIKDFGIFIKLE 474
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+L GL+ + D D + GDE+ +I ID +K+R+ LS+++LE+
Sbjct: 475 -----NNLDGLIR----NEDFGPLKADEVKNGDEIEAVIINIDTKKNRVRLSVRRLEQQQ 525
Query: 135 LLETLEKVIPQDGSVISDSSSMS 157
E L+ V +D +SM+
Sbjct: 526 EREVLKSV--------NDDTSMT 540
>gi|90416549|ref|ZP_01224480.1| 30S ribosomal protein S1 [gamma proteobacterium HTCC2207]
gi|90331748|gb|EAS46976.1| 30S ribosomal protein S1 [gamma proteobacterium HTCC2207]
Length = 557
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +H++++SW I+ +++N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGL------LHITDMSWKRIKHPSEMINVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GMKQMGEDP 266
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V+ +EE +++ K W+ +++ + D G+ D+G FI L
Sbjct: 325 GDEVEVMVLDIDEERRRISLGIKQCHTNPWDDFATTMVKGDKISGKIKSITDFGIFIGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GLVH+S++SW+ + +R+ +G+EV V+ ID E+ RI+L IKQL +
Sbjct: 384 --DG--GIDGLVHLSDISWNETGEEAVRN-FKKGEEVETVVLSIDAERERISLGIKQLSD 438
Query: 133 DPL 135
DP
Sbjct: 439 DPF 441
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L DG+ GLVHVSE+ W +++ I+N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE--DGV---EGLVHVSEMDW-TNKNVHPSKIVNLGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCHTNP 353
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 89 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
SE+S D ++D R L EG E+ K+I +DR+ I+LS+K
Sbjct: 481 SELSRDKVEDARHELQEGQEIEAKIINVDRKTRAISLSVK 520
>gi|218440421|ref|YP_002378750.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7424]
gi|218173149|gb|ACK71882.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 328
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +E+ +LV S + A+ + + + V + +G + Y
Sbjct: 152 STREAKEDLVGQDLPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 212 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLST 265
Query: 128 KQLE 131
KQLE
Sbjct: 266 KQLE 269
>gi|21672576|ref|NP_660643.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|2500382|sp|Q44653.1|RS1_BUCAP RecName: Full=30S ribosomal protein S1
gi|1448954|gb|AAC05429.1| ribosomal protein S1 [Buchnera aphidicola]
gi|21623204|gb|AAM67854.1| 30S ribosomal protein S1 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 559
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VK++K D+E++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSL 257
Query: 126 SIKQLEEDPLL 136
+KQL EDP +
Sbjct: 258 GLKQLGEDPWI 268
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS--SRVNVEDIFVG---- 64
K+IH +I+ V V+ +EE +++ K N + S + + I V
Sbjct: 313 NKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L+ + GLVH+S++SW + ++ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGLKGG-----IDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 428 RISLGIKQLEEDPF 441
Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 24/130 (18%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR-----DYGA 69
G I+VK+++ ++E ++ K A+ N+Y + + GR DYG
Sbjct: 237 VGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISNRYPEGIKLS----GRVTNLTDYGC 292
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSI 127
F+ + + GLVHVSE+ W ++I ++ + V V V+ ID E+ RI+L +
Sbjct: 293 FVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGL 346
Query: 128 KQLEEDPLLE 137
KQ + +P E
Sbjct: 347 KQCKINPWQE 356
>gi|152979212|ref|YP_001344841.1| 30S ribosomal protein S1 [Actinobacillus succinogenes 130Z]
gi|150840935|gb|ABR74906.1| ribosomal protein S1 [Actinobacillus succinogenes 130Z]
Length = 550
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 18/132 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S ++D V + V V+ I +YG
Sbjct: 148 LLGKELEFKVIKLDQKRNNVVVSRRAVIESENSADRDEVLANLAEGVEVKGIVKNLTEYG 207
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+E++R++L +K
Sbjct: 208 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKERTRVSLGLK 261
Query: 129 QLEEDPLLETLE 140
QL +DP + E
Sbjct: 262 QLGQDPWVAIAE 273
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 314 NKNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVSGKIK 373
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 374 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVEAVVLQVDSTK 427
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLE+DP + I + G+V+S + + + +E G+
Sbjct: 428 ERISLGIKQLEDDPFNNFVS--INKKGAVLSATVVEADAKGAKVELAGGV 475
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E ++ K W + V G+ DYG F+ +
Sbjct: 239 GDEITVKVLKFDKERTRVSLGLKQLGQDPWVAIAENYPVGSKLTGKVTNLTDYGCFVEI- 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 ----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLKQCKP 352
Query: 133 DPLLETLE 140
+P L+ E
Sbjct: 353 NPWLQFAE 360
>gi|295698418|ref|YP_003603073.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
gi|291157307|gb|ADD79752.1| ribosomal protein S1 [Candidatus Riesia pediculicola USDA]
Length = 554
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW ++ +I+ GD ++VKV+K D++KSR++L
Sbjct: 206 DYGAFIDLGGVDGLLHIT------DISWKRVKHPSEIVKIGDNIKVKVLKFDKDKSRVSL 259
Query: 126 SIKQLEEDPLLETLEKVIP 144
+KQL DP LEK P
Sbjct: 260 GLKQLGIDPWKGILEKYSP 278
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V ++ +E+ +++ K W ++S + D G+ D+G FI L
Sbjct: 327 GEEIKVMILDIDEKRRRISLGLKQCQPNPWKQFSEAHSKNDRVEGKIKSITDFGIFIELN 386
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH S+VSWD + + +GD + V+++D E+ RI+L IKQL ED
Sbjct: 387 -----GGIDGLVHSSDVSWDNSYEEESVKYKKGDLISAVVLQVDFERERISLGIKQLSED 441
Query: 134 PLLETLEKVIPQD---GSVIS 151
P+ + +K D G VIS
Sbjct: 442 PIQKYSKKYKKGDKIFGKVIS 462
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I I+N G+E++V ++ ID ++ RI
Sbjct: 291 DYGCFVEIE-----EGIEGLVHVSEIDWTK-RNIHPSKIVNIGEEIKVMILDIDEKRRRI 344
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 345 SLGLKQCQPNP 355
>gi|379009524|ref|YP_005267337.1| 30S ribosomal protein S1 [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375158048|gb|AFA41114.1| 30S ribosomal subunit protein S1 [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 557
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W ++ +I+ GDE+ VK++K DREK+R++L
Sbjct: 204 DYGAFIDLGGIDGLLHIT------DMAWKRVKHPSEIVGMGDEITVKILKFDREKTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSV 149
+KQL +DP + L P++ +V
Sbjct: 258 GLKQLSQDPWI-NLSTKYPENKNV 280
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 17/158 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G I++V V+ +E+ +++ K W K+S D G+
Sbjct: 313 NKNIHPSKVVQIGDIVNVLVLDIDEDRRRISLGLKQCQPNPWKKFSEIHKKGDCVKGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S+VSW+L ++ +GD + V+++D ++
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDVSWNLSGEEAVKEYKKGDLISAMVLQVDSDRE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQ---DGSVISDSSSM 156
RI+L +KQL EDP + K DG +I S ++
Sbjct: 428 RISLGVKQLLEDPFHHYITKYKKGDIVDGKIIKRSDNI 465
Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VK+++ + E ++ K W S++ GR DYG F+ +
Sbjct: 238 GDEITVKILKFDREKTRVSLGLKQLSQDPWINLSTKYPENKNVSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+SE+ W ++I ++ GD V V V+ ID ++ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHISEMDW-TNKNIHPSKVVQIGDIVNVLVLDIDEDRRRISLGLKQCQP 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|392551527|ref|ZP_10298664.1| 30S ribosomal protein S1 [Pseudoalteromonas spongiae UST010723-006]
Length = 555
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVNLGDTVEVMVLEIDEERRRISLGLKQCKANPWQEFARLQNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNTPGEEAVRE-FKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + G+++ + + T+E + G+
Sbjct: 428 RISLGVKQIEADPFNNYLDA--NKKGAIVKGKVTEVDAKGATVELIEGV 474
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++N GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLE 137
+L +KQ + +P E
Sbjct: 343 SLGLKQCKANPWQE 356
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLETLE 140
G + V++V+ + +D +L+ GDEV K + +DR+ I+LSIK + EE L+ L+
Sbjct: 476 GYIRVADVAVERTEDASTVLSVGDEVEAKFVGVDRKNRAISLSIKAISEAEEKEALDKLK 535
Query: 141 KVIPQ 145
K PQ
Sbjct: 536 KEEPQ 540
>gi|336451289|ref|ZP_08621727.1| ribosomal protein S1 [Idiomarina sp. A28L]
gi|336281660|gb|EGN74932.1| ribosomal protein S1 [Idiomarina sp. A28L]
Length = 564
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ KV+K DR+++R++L
Sbjct: 210 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINCKVLKFDRDRTRVSL 263
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 264 GLKQLGEDP 272
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 18/156 (11%)
Query: 25 IISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFP 76
++ V V++ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 333 VVEVMVLEIDEERRRISLGIKQCKPNPWEEFAKGFQKGDKVSGKIKSITDFGIFIGL--- 389
Query: 77 DGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG ++ GLVH+S++SW+ + +RD +GDEV V+++D E+ RI+L IKQ+ EDP
Sbjct: 390 DG--NIDGLVHLSDISWNATGEEAVRD-FKKGDEVEAVVLQVDAERERISLGIKQISEDP 446
Query: 135 LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ L + G+++ S + + T++ G+
Sbjct: 447 VNNFL--AANKKGAIVKGSITEVDAKGATVKLADGV 480
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--D 101
W+ S+R GR DYG F+ L+ + GLVHVSE+ W +++
Sbjct: 273 WSDISARYPENSTLSGRVTNLTDYGCFVELQ-----EGVEGLVHVSEMDW-TNKNVHPSK 326
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
I+N D V V V++ID E+ RI+L IKQ + +P
Sbjct: 327 IVNLDDVVEVMVLEIDEERRRISLGIKQCKPNP 359
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---Q 129
++ DG+ G V S+++ + I+D +L+ GDE+ + + IDR+ I+LSIK +
Sbjct: 474 VKLADGV---EGYVRASDIARERIEDASTVLSVGDEIEARYVGIDRKNRVISLSIKAKDE 530
Query: 130 LEEDPLLETL 139
EE +ET+
Sbjct: 531 AEEKAAMETV 540
>gi|315222942|ref|ZP_07864821.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
gi|315187892|gb|EFU21628.1| 30S ribosomal protein S1 [Streptococcus anginosus F0211]
Length = 399
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
+ E +K
Sbjct: 355 VQEDDQK 361
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V DI G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 GKLAVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|334143908|ref|YP_004537064.1| 30S ribosomal protein S1 [Thioalkalimicrobium cyclicum ALM1]
gi|333964819|gb|AEG31585.1| ribosomal protein S1 [Thioalkalimicrobium cyclicum ALM1]
Length = 552
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W + +I+ GDE+ VKV+K D+E++R++L
Sbjct: 204 DYGAFIDLGGVDGLLHIT------DMAWRRVNHPSEIVQVGDEIEVKVLKFDKERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+EEDP
Sbjct: 258 GLKQMEEDP 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
P K +H G + VK++ +++ +++ S K W +++ N D G
Sbjct: 318 PSKVVH------LGQEVRVKILDVDQDRRRISLSIKQCTVNPWEGFAATHNKGDKISGNI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQDIRDILNEGDEVRVKVIKIDRE 119
D+G FI L DG + GLVH++++SW + + IRD +GDE+ ++ ID E
Sbjct: 372 KSITDFGIFIGL---DG--GIDGLVHLTDISWAQNGEEAIRD-FKKGDELETIILSIDPE 425
Query: 120 KSRITLSIKQLEEDPL 135
+ RI+L +KQLE+DP
Sbjct: 426 RERISLGLKQLEQDPF 441
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ ++E ++ K + W+ +R + G+ DYGAFI +
Sbjct: 238 GDEIEVKVLKFDKERNRVSLGLKQMEEDPWSDMVARYPIGSETGGKVANITDYGAFIEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVH SE+ W ++I +++ G EVRVK++ +D+++ RI+LSIKQ
Sbjct: 297 -EDGI---EGLVHTSELDW-TNRNIHPSKVVHLGQEVRVKILDVDQDRRRISLSIKQCTV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|299538552|ref|ZP_07051835.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZC1]
gi|298726139|gb|EFI66731.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZC1]
Length = 378
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 20/164 (12%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAV-WNKYSSRVNV------EDIFVGR-----D 66
+G G I+S K+++ ++ +L+ S + V K S + NV D+ G+
Sbjct: 140 EGYKGQILSFKIVELDKGKNRLILSHRAVVEAEKASQKKNVINQIKAGDVLDGKVQRLAS 199
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI L DGL VH+S+VS + + D+ ++L EG +V+VKV+ +D E RI+LS
Sbjct: 200 FGAFIDLGGIDGL------VHISQVSHEHVSDVSEVLAEGQDVKVKVLSVDPENERISLS 253
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
IK+ P E+ G+++ +S +E PG+
Sbjct: 254 IKETIPGPWSNIEER--AAKGTILDGRVKRLTSFGAFVEVFPGV 295
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K+ + W+ R I GR +GAF+ +
Sbjct: 233 GQDVKVKVLSVDPENERISLSIKETIPGPWSNIEERAAKGTILDGRVKRLTSFGAFVEV- 291
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S+++ I + L EG EV+VKV+ ++ ++ R+ LSIK+L E+P
Sbjct: 292 FPG----VEGLVHISQIAHKHINTPHEALKEGQEVQVKVLDVNADEGRLALSIKELLENP 347
>gi|87119277|ref|ZP_01075175.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
gi|86165668|gb|EAQ66935.1| 30S ribosomal protein S1 [Marinomonas sp. MED121]
Length = 561
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K+IH G + V ++ +EE +++ K W ++++ N D G
Sbjct: 313 NKNIHPSKVVQIGDEVEVMILDIDEERRRISLGVKQCTPNPWEEFATSYNKGDKISGGIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SWD + +R +GD + V+ ID E+
Sbjct: 373 SITDFGVFIGLE-----GGIDGLVHLSDLSWDETGEEAVRQ-YKKGDNLETVVLSIDAER 426
Query: 121 SRITLSIKQLEEDPLL 136
RI+L +KQLEEDP +
Sbjct: 427 ERISLGVKQLEEDPFV 442
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V ++ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMILDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ +P
Sbjct: 343 SLGVKQCTPNP 353
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
+ VSE+S D ++D +L EGD V VI +DR+ I LSIKQ
Sbjct: 478 LKVSELSRDRVEDATSVLKEGDSVEAAVINVDRKARTIALSIKQ 521
>gi|442611143|ref|ZP_21025849.1| SSU ribosomal protein S1p [Pseudoalteromonas luteoviolacea B = ATCC
29581]
gi|441747071|emb|CCQ11911.1| SSU ribosomal protein S1p [Pseudoalteromonas luteoviolacea B = ATCC
29581]
Length = 555
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEILVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K W +++ + N D G+
Sbjct: 314 KNIHPSKVVSLGDSVEVMVLEIDEERRRISLGLKQCKPNPWQEFARQFNKGDQVTGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ + +R+ +GDE+ V+++D E+
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNTPGEEAVRE-YKKGDEITAIVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L +KQ+E DP L+ + G+++ + + T+E G+
Sbjct: 428 RISLGVKQIEADPFNNYLDA--NKKGAIVKGKVTDVDAKGATVELGEGV 474
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDSVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLE 137
+L +KQ + +P E
Sbjct: 343 SLGLKQCKPNPWQE 356
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL---EEDPLLETLE 140
G + V++++ + ++D +++ GDE+ K + +DR+ I+LS+K + EE +LE L+
Sbjct: 476 GYIRVADIAQERVEDATTVVSAGDEIEAKFMGVDRKNRAISLSVKAMFEAEEKEVLEKLK 535
Query: 141 KVIPQ 145
K P+
Sbjct: 536 KEEPE 540
>gi|350564015|ref|ZP_08932834.1| ribosomal protein S1 [Thioalkalimicrobium aerophilum AL3]
gi|349778015|gb|EGZ32374.1| ribosomal protein S1 [Thioalkalimicrobium aerophilum AL3]
Length = 552
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W + +I+ GDE+ VKV+K D+E++R++L
Sbjct: 204 DYGAFIDLGGVDGLLHIT------DMAWRRVNHPSEIVQVGDEIEVKVLKFDKERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+EEDP
Sbjct: 258 GLKQMEEDP 266
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
P K +H G + VK++ +++ +++ S K W +++ N D G
Sbjct: 318 PSKVVH------LGQEVRVKILDVDQDRRRISLSIKQCTVNPWEGFAATHNKGDKISGNI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQDIRDILNEGDEVRVKVIKIDRE 119
D+G FI L DG + GLVH++++SW + + IRD +GDE+ ++ ID E
Sbjct: 372 KSITDFGIFIGL---DG--GIDGLVHLTDISWAQNGEEAIRD-FKKGDELETIILSIDPE 425
Query: 120 KSRITLSIKQLEEDPL 135
+ RI+L +KQLE+DP
Sbjct: 426 RERISLGLKQLEQDPF 441
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ ++E ++ K + W +R + G+ DYGAFI +
Sbjct: 238 GDEIEVKVLKFDKERNRVSLGLKQMEEDPWADMVARYPIGSETGGKVANITDYGAFIEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVH SE+ W ++I +++ G EVRVK++ +D+++ RI+LSIKQ
Sbjct: 297 -EDGI---EGLVHTSELDW-TNRNIHPSKVVHLGQEVRVKILDVDQDRRRISLSIKQCTV 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4]
Length = 299
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 77/134 (57%), Gaps = 13/134 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + + +++ S K+ + W++ ++R + + G YGAFI L
Sbjct: 155 GQAVKVKVLSVDRDNERISLSIKETLPGPWSEIANRASKGSVLEGEVKRIVSYGAFIEL- 213
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S + ++L EG V+VKV+ ++ + R++LSIK+LEE P
Sbjct: 214 FPG----VEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIKELEEKP 269
Query: 135 LLETLEKVIPQDGS 148
+ E + +P++ S
Sbjct: 270 VQEVEKYELPEENS 283
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAFIHL 73
++ K+++ ++E +L+ S + V ++ + + + + G D+GAF+ +
Sbjct: 69 LTFKIVELDQEKNRLILSHRAVVESEKEQKKKQLLESLKQDQVLEGTVQRITDFGAFVDI 128
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL VH+S++S + ++ D++ EG V+VKV+ +DR+ RI+LSIK+
Sbjct: 129 GGVDGL------VHISQLSHEHVEKPTDVVAEGQAVKVKVLSVDRDNERISLSIKETLPG 182
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P E + GSV+ S IE PG+
Sbjct: 183 PWSEIANR--ASKGSVLEGEVKRIVSYGAFIELFPGV 217
>gi|256822123|ref|YP_003146086.1| 30S ribosomal protein S1 [Kangiella koreensis DSM 16069]
gi|256795662|gb|ACV26318.1| ribosomal protein S1 [Kangiella koreensis DSM 16069]
Length = 555
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K+IH G + V V+ +EE +++ K V WN++++ N D G
Sbjct: 313 NKNIHPSKVVNLGDEVEVMVLDIDEERRRISLGIKQCVPNPWNEFAATHNKGDKVSGSIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW + + +RD +GDEV V+ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWTVAGEEAVRD-YKKGDEVEAVVLAVDAER 426
Query: 121 SRITLSIKQLEEDPLLETL 139
RI+L IKQ++ DPL E L
Sbjct: 427 ERISLGIKQVDSDPLAEYL 445
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVQVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLE 137
IKQL DP ++
Sbjct: 258 GIKQLGSDPWVD 269
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + DG+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCVPNP 353
>gi|326794751|ref|YP_004312571.1| 30S ribosomal protein S1 [Marinomonas mediterranea MMB-1]
gi|326545515|gb|ADZ90735.1| ribosomal protein S1 [Marinomonas mediterranea MMB-1]
Length = 560
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIIAVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K+IH G + V V+ +EE +++ K W +++ N D G
Sbjct: 313 NKNIHPSKVVQIGDEVEVMVLDIDEERRRISLGIKQCTPNPWEEFAGSFNKGDKISGAIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SWD + +R +GD + V+ ID E+
Sbjct: 373 SITDFGVFIGL---DG--GIDGLVHLSDLSWDETGEEAVRQ-YKKGDLLETVVLSIDAER 426
Query: 121 SRITLSIKQLEEDPLL 136
RI+L +KQL EDP +
Sbjct: 427 ERISLGVKQLAEDPFI 442
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQIGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCTPNP 353
>gi|126659306|ref|ZP_01730442.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126619388|gb|EAZ90121.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 365
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + +G + Y
Sbjct: 180 STREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 239
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + DE++V +I +D E+ RI+LS
Sbjct: 240 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLST 293
Query: 128 KQLE 131
KQLE
Sbjct: 294 KQLE 297
>gi|408410414|ref|ZP_11181631.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
gi|409350333|ref|ZP_11233493.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
gi|407875408|emb|CCK83437.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
gi|407877499|emb|CCK85551.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
Length = 401
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I VK+ + + +L+ S E++ + +S++ V D+ GR +GAF
Sbjct: 154 GKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAF 213
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G +V+VKVI ID +++RI+LSIKQ
Sbjct: 214 VDIGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQT 267
Query: 131 EEDPL 135
E P
Sbjct: 268 EPSPF 272
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + ++ +N DI G ++GAF+ +
Sbjct: 243 GQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQATANLNEGDIIEGEVKSLTNFGAFVEV- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
DG+ GLVHVSE+S + D+L G +V+VKV+ +D + RI+LSIKQ +
Sbjct: 302 -ADGI---QGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQAD 354
>gi|383316630|ref|YP_005377472.1| 30S ribosomal protein S1 [Frateuria aurantia DSM 6220]
gi|379043734|gb|AFC85790.1| ribosomal protein S1 [Frateuria aurantia DSM 6220]
Length = 557
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS-------RVNVEDIFVGR-----DYG 68
L G + K+I+ + + +V S + V ++S R+N + G DYG
Sbjct: 148 LEGKDLEFKIIKLDRKRNNVVVSRRAVVETEFSEEREKLMERLNEGAVVKGTVKNLTDYG 207
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL +H+++++W ++ +++N GDE+ V+V+K DRE++R++L +K
Sbjct: 208 AFVDLGGIDGL------LHITDMAWKRVRHPSEVVNVGDELEVRVLKYDRERNRVSLGLK 261
Query: 129 QLEEDP 134
QL +DP
Sbjct: 262 QLGDDP 267
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDETEVMVLDVDEERRRISLGIKQTRSNPWEAFAAMHKKGDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW + +D+ +GDE+ V+ +D E+ RI+L IKQ+E+D
Sbjct: 385 --DG--GIDGLVHLSDISWQVSGEDLVRNFKKGDEIEAVVLAVDPERERISLGIKQMEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K D W S R V G+ DYG F+ +
Sbjct: 239 GDELEVRVLKYDRERNRVSLGLKQLGDDPWVNISRRYPVGSRLFGKVSNVTDYGCFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDE V V+ +D E+ RI+L IKQ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPAKVVQVGDETEVMVLDVDEERRRISLGIKQTRSN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|406938148|gb|EKD71434.1| hypothetical protein ACD_46C00183G0001 [uncultured bacterium]
Length = 412
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T ++SW I+ +IL+ GDE++VK++KIDR+ R++L
Sbjct: 37 DYGAFIDLGGVDGLLHIT------DMSWKRIKHPNEILSIGDELKVKILKIDRDNVRVSL 90
Query: 126 SIKQLEEDPLLE 137
+KQL DP L+
Sbjct: 91 GLKQLGGDPWLD 102
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVN 57
M ++ P K IH G + V V+ + E +++ K W ++
Sbjct: 142 MDWTNKNVNPNKVIH------LGQEVEVLVLDVDAERRRISLGVKQCTANPWAAFAENHQ 195
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVR 110
+ G+ D+G F+ L DG + GL+++S+++W QD +GDE+
Sbjct: 196 KSEQVKGKIKSITDFGIFLEL---DG--GIDGLIYLSDIAWSETEAQDTLRKYQKGDELE 250
Query: 111 VKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
++ ID E+ RI L +KQL EDPL L + + G+V++
Sbjct: 251 AIILAIDVERERIALGLKQLAEDPLANYLTE--NEKGTVVT 289
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 102
W S R V GR DYG F+ + + GLVHVSE+ W + + +
Sbjct: 100 WLDISQRYPVNSRITGRVTNITDYGCFVEIE-----EGIEGLVHVSEMDWTNKNVNPNKV 154
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++ G EV V V+ +D E+ RI+L +KQ +P
Sbjct: 155 IHLGQEVEVLVLDVDAERRRISLGVKQCTANP 186
>gi|375108456|ref|ZP_09754713.1| 30S ribosomal protein S1 [Alishewanella jeotgali KCTC 22429]
gi|374571558|gb|EHR42684.1| 30S ribosomal protein S1 [Alishewanella jeotgali KCTC 22429]
Length = 559
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+K R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIPVKVLKFDRDKQRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNKGDRVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDEV V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQL+EDP + L + G+++ S + T+
Sbjct: 428 RISLGIKQLDEDPFNDYLAD--NKKGAIVKGEVSAVDAKGATV 468
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G I VKV++ + + +++ K + W +SR GR DYG F+ +
Sbjct: 237 VGDEIPVKVLKFDRDKQRVSLGLKQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEI 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 297 E-----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCK 350
Query: 132 EDP 134
+P
Sbjct: 351 ANP 353
>gi|418036541|ref|ZP_12674957.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354687591|gb|EHE87671.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 401
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I VK+ + + +L+ S E++ + +S++ V D+ GR D+G+F
Sbjct: 154 GKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSF 213
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 214 VDIGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 267
Query: 131 EEDPL 135
E P
Sbjct: 268 EPSPF 272
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + +S +N D+ G ++GAF+ +
Sbjct: 243 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
DG+ GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 302 -ADGI---QGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVD 354
>gi|91070108|gb|ABE11032.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC729]
Length = 363
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 13/167 (7%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S +I L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 200 SARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP--LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGA 172
K LE +P +L +KV + + + M ++ E +P A
Sbjct: 314 KALEPEPGDMLTDPQKVFSKAEEMAAKYKQMLFEQTDENEEIPTASA 360
>gi|418963617|ref|ZP_13515452.1| 30S ribosomal protein S1 [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|383342941|gb|EID21141.1| 30S ribosomal protein S1 [Streptococcus anginosus subsp. whileyi
CCUG 39159]
Length = 399
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEDSQK 361
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S++ V DI G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 SKLAVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|359784369|ref|ZP_09287541.1| 30S ribosomal protein S1 [Halomonas sp. GFAJ-1]
gi|359298329|gb|EHK62545.1| 30S ribosomal protein S1 [Halomonas sp. GFAJ-1]
Length = 559
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 7/84 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSV 149
+KQL EDP + +++ P++ V
Sbjct: 258 GLKQLGEDPWV-NIKQRYPENTKV 280
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ ++ SE+S D ++D R++LNEGD V +++ +DR+ +I LSIK E+D + L+K
Sbjct: 474 VIAILKASEISADRVEDARNVLNEGDSVEARIVNVDRKSRQINLSIKAKEQDDTRQNLKK 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 LRDQE 538
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G D+G FI L + GLVH+S++SW + +R+
Sbjct: 354 WETFNAEYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTETGEEAVRN 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
+GDE ++ ID E+ RI+L IKQ++ DP+ E L + GS+++
Sbjct: 409 -FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYLS--VNDKGSIVT 455
>gi|319939079|ref|ZP_08013443.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
gi|335030671|ref|ZP_08524155.1| 30S ribosomal protein S1 [Streptococcus anginosus SK52 = DSM 20563]
gi|319812129|gb|EFW08395.1| 30S ribosomal protein S1 [Streptococcus anginosus 1_2_62CV]
gi|333771277|gb|EGL48230.1| 30S ribosomal protein S1 [Streptococcus anginosus SK52 = DSM 20563]
Length = 399
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEDSQK 361
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S++ V DI G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 SKLAVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|31747721|gb|AAO38350.1| Lfe154p1 [Leptospirillum ferrooxidans]
Length = 369
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR----------DYG 68
L G I V++I+ N++ ++ S + + W +V ++ + G DYG
Sbjct: 8 LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEVLEGIVKNITDYG 67
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H++++SW + + +D++N GD++ V V+K DR+ R++L +K
Sbjct: 68 AFIDLGGIDGL------LHITDMSWGRVSNPQDLMNVGDKLNVVVLKHDRDTGRVSLGLK 121
Query: 129 QLEEDP 134
QL DP
Sbjct: 122 QLSADP 127
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVN 57
MS +H K P K ++ G ++ +V++ +E+ +K+ K W+ R
Sbjct: 170 MSWNHEVKHPSKIMN------VGDVVEARVLKIDEKNRKISLGLKQLGPNPWDSVEERYP 223
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRV 111
V + G+ D+GAF+ L +G+ GL+H+S++SW ++ ++ +G +V V
Sbjct: 224 VGTVVSGKVKSLTDFGAFVGL--DEGI---DGLIHISDMSWTKHVRHPSELFKKGQKVDV 278
Query: 112 KVIKIDREKSRITLSIKQLEEDP 134
V+KI++E+ R++L KQL +DP
Sbjct: 279 AVLKIEKERQRLSLGFKQLSQDP 301
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 8/87 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + P + GL+HV+E+SW+ ++ I+N GD V +V+KID + +I+
Sbjct: 150 DYGAFLEIE-PG----VEGLMHVTEMSWNHEVKHPSKIMNVGDVVEARVLKIDEKNRKIS 204
Query: 125 LSIKQLEEDPLLETLEKVIPQDGSVIS 151
L +KQL +P +++E+ P G+V+S
Sbjct: 205 LGLKQLGPNP-WDSVEERYPV-GTVVS 229
>gi|91069895|gb|ABE10824.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC2150]
Length = 363
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 13/167 (7%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S +I L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 200 SARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP--LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGA 172
K LE +P +L +KV + + + M ++ E +P A
Sbjct: 314 KALEPEPGDMLTDPQKVFSKAEEMAAKYKQMLFEQTDENEEIPTASA 360
>gi|400406032|ref|YP_006588780.1| ribosomal protein S1 [secondary endosymbiont of Heteropsylla
cubana]
gi|400364285|gb|AFP85352.1| ribosomal protein S1 [secondary endosymbiont of Heteropsylla
cubana]
Length = 559
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+ GDE+ VK++K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVTVGDEITVKILKFDRERTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL EDP + + K P++
Sbjct: 258 GLKQLGEDPWI-AIAKRYPEN 277
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G I++V V++ +EE +++ K W +++ + + G+
Sbjct: 313 NKNIHPSKVVNVGDIVNVMVLEIDEERRRISLGLKQCKPNPWQQFAETYHKGERVEGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + ++ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGLN-----GGIDGLVHLSDISWQVAGEEAVRAYKKGDEIAAVVLQVDAERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQL EDP L + + GS+++ + T+E G+
Sbjct: 428 RISLGIKQLAEDPFNNYL--YLNKKGSIVTGKIKDVDTKGVTVELSDGV 474
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VK+++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKILKFDRERTRVSLGLKQLGEDPWIAIAKRYPENTCLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDIVNVMVLEIDEERRRISLGLKQCKP 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|397170590|ref|ZP_10494003.1| 30S ribosomal protein S1 [Alishewanella aestuarii B11]
gi|396087833|gb|EJI85430.1| 30S ribosomal protein S1 [Alishewanella aestuarii B11]
Length = 568
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DR+K R++L
Sbjct: 213 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIPVKVLKFDRDKQRVSL 266
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 267 GLKQMGEDP 275
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 322 NKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKANPWEEFAKGFNKGDRVSGKIK 381
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ +D +GDEV V+++D E+
Sbjct: 382 SITDFGIFIGL---DG--GIDGLVHLSDISWNSTGEDAVREFKKGDEVHAVVLQVDPERE 436
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
RI+L IKQL+EDP + L + G+++ S + T+
Sbjct: 437 RISLGIKQLDEDPFNDYLAD--NKKGAIVKGEVSAVDAKGATV 477
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + + +++ K + W +SR GR DYG F+ +
Sbjct: 247 GDEIPVKVLKFDRDKQRVSLGLKQMGEDPWAAIASRYPEGAKISGRVTNLTDYGCFVEIE 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 307 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDAVEVMVLEIDEERRRISLGLKQCKA 360
Query: 133 DP 134
+P
Sbjct: 361 NP 362
>gi|423221968|ref|ZP_17208438.1| ribosomal protein S1 [Bacteroides cellulosilyticus CL02T12C19]
gi|392644245|gb|EIY37985.1| ribosomal protein S1 [Bacteroides cellulosilyticus CL02T12C19]
Length = 598
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++V ++ ++E K++ K W+ S+ + V D G+ DYGAFI + P
Sbjct: 263 LNVVILDFDDEKKRIALGLKQLTPHPWDALSAELKVGDKVKGKVVVMADYGAFIEIA-PG 321
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ +D + GDEV V+ +DRE+ +++L IKQL++DP
Sbjct: 322 ----VEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMSLGIKQLKQDP-W 376
Query: 137 ETLEKVIP 144
ET+E+ P
Sbjct: 377 ETIEEKYP 384
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G + KV++ N+E K +V S K + + ++ + G YG
Sbjct: 169 FVGKTMEFKVVKINQEFKNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYG 228
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
FI L DGL +H++++SW + D ++++ ++ V ++ D EK RI L +K
Sbjct: 229 VFIDLGGVDGL------IHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282
Query: 129 QLEEDP 134
QL P
Sbjct: 283 QLTPHP 288
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ + +G+ GL+H+S++SW ++ + G ++ V+V++ID+E R++
Sbjct: 398 NFGVFVEIE--EGV---DGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKENRRLS 452
Query: 125 LSIKQLEEDP 134
L KQLEE+P
Sbjct: 453 LGHKQLEENP 462
>gi|254785518|ref|YP_003072947.1| 30S ribosomal protein S1 [Teredinibacter turnerae T7901]
gi|237685745|gb|ACR13009.1| ribosomal protein S1 [Teredinibacter turnerae T7901]
Length = 560
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEIEVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V ++ +EE +++ K W+ +S++ D G+
Sbjct: 314 KNIHPSKVVNLGDEVEVMILDIDEERRRISLGIKQCQENPWDAFSNQYAKGDKITGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ + +R +GDE+ V+ ID E+
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNEAGEEAVRK-YKKGDELETVVLAIDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL+EDP
Sbjct: 428 RISLGIKQLDEDPF 441
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ +Y V+ DYG F +
Sbjct: 238 GDEIEVKVLKFDRERNRVSLGLKQLGEDPWAAITQRYPEGAKVKATITNLTDYGCFAEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V ++ ID E+ RI+L IKQ +E
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNLGDEVEVMILDIDEERRRISLGIKQCQE 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
G + SE+S D ++D R+ L EGD+V K+ +DR+ I LSIK + D
Sbjct: 476 GTLKASEISRDKVEDARNALKEGDDVEAKITNVDRKNRTIILSIKAKDSD 525
>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 401
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I VK+ + + +L+ S E++ + +S++ V D+ GR D+G+F
Sbjct: 154 GKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSF 213
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 214 VDIGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 267
Query: 131 EEDPL 135
E P
Sbjct: 268 EPSPF 272
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + +S +N D+ G ++GAF+ +
Sbjct: 243 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
DG+ GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 302 -ADGI---QGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRISLSIKQVD 354
>gi|414074052|ref|YP_006999269.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413973972|gb|AFW91436.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 408
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 20/140 (14%)
Query: 4 SHS-CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVE 59
SHS K P ++ G +++VK+++ + E +L S K W + + V
Sbjct: 227 SHSRIKRPSDAVK------PGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVG 280
Query: 60 DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114
G D+GAF+ L +P + GLVHVS++SW+ +++ +D+L G V VKV+
Sbjct: 281 STVEGTVKRLTDFGAFVEL-YP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVL 335
Query: 115 KIDREKSRITLSIKQLEEDP 134
+ + RI+LSIK LEE P
Sbjct: 336 DVKPAEERISLSIKALEEAP 355
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFS-----EKDAVWNKYSSRVNVE--DIFVGR-----D 66
K G I K+I+ N + + S E +A+ + + ++ DI G +
Sbjct: 148 KKFVGEEIEAKIIEVNASENRFILSRRAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTN 207
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF+ L DGL VHVSE+S I+ D + GD V VK++K+D E R++LS
Sbjct: 208 FGAFVDLGGIDGL------VHVSELSHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLS 261
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+K + P + EK + + S+ T++ L GA E
Sbjct: 262 LKATQPGPWEQVEEK------------APVGSTVEGTVKRLTDFGAFVE 298
>gi|395240782|ref|ZP_10417806.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475564|emb|CCI87783.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
Length = 400
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ I D L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 14/136 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI +++ ++ S K + + + +S +N D+F G ++GAF+ +
Sbjct: 244 GQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEV- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
DG+ GLVHVSE+S + D+L G V+VKV+ ID + RI+LSIK EE+
Sbjct: 303 -TDGIQ---GLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKATEENA 358
Query: 135 LLETLEKVIPQ-DGSV 149
E+ P+ D SV
Sbjct: 359 ASESARPRRPRTDNSV 374
>gi|157412674|ref|YP_001483540.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387249|gb|ABV49954.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 363
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 13/167 (7%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S +I L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 200 SARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP--LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGA 172
K LE +P +L +KV + + + M ++ E +P A
Sbjct: 314 KALEPEPGDMLTDPQKVFSKAEEMAAKYKQMLFEQTDENEDMPTATA 360
>gi|189467749|ref|ZP_03016534.1| hypothetical protein BACINT_04141 [Bacteroides intestinalis DSM
17393]
gi|224538667|ref|ZP_03679206.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
DSM 14838]
gi|189436013|gb|EDV04998.1| 30S ribosomal protein S1 [Bacteroides intestinalis DSM 17393]
gi|224519711|gb|EEF88816.1| hypothetical protein BACCELL_03561 [Bacteroides cellulosilyticus
DSM 14838]
Length = 598
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++V ++ ++E K++ K W+ S+ + V D G+ DYGAFI + P
Sbjct: 263 LNVVILDFDDEKKRIALGLKQLTPHPWDALSAELKVGDKVKGKVVVMADYGAFIEIA-PG 321
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ +D + GDEV V+ +DRE+ +++L IKQL++DP
Sbjct: 322 ----VEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMSLGIKQLKQDP-W 376
Query: 137 ETLEKVIP 144
ET+E+ P
Sbjct: 377 ETIEEKYP 384
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G + KV++ N+E K +V S K + + ++ + G YG
Sbjct: 169 FVGKTMEFKVVKINQEFKNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYG 228
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
FI L DGL +H++++SW + D ++++ ++ V ++ D EK RI L +K
Sbjct: 229 VFIDLGGVDGL------IHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282
Query: 129 QLEEDP 134
QL P
Sbjct: 283 QLTPHP 288
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ + + GL+H+S++SW ++ + G ++ V+V++ID+E R++
Sbjct: 398 NFGVFVEIE-----EGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKENRRLS 452
Query: 125 LSIKQLEEDP 134
L KQLEE+P
Sbjct: 453 LGHKQLEENP 462
>gi|166157063|emb|CAO79520.1| 30S ribosomal protein S1 [uncultured candidate division WWE3
bacterium EJ0ADIGA11YD11]
Length = 414
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 79/137 (57%), Gaps = 7/137 (5%)
Query: 14 IHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGRDYGAFI 71
+ E K L+G + VKVI+ ++E + V SEKDA+ +++ S + + +I +G +
Sbjct: 167 LKESLKILSGKTLRVKVIEIDKEKNRFVLSEKDALATYSEESRKKRLSEIKIGSTVEGIV 226
Query: 72 HLRFPDGLY----HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
P G++ + GLVH+SE++W+ + + G +++V V+ +D E +++ LS+
Sbjct: 227 TGIMPFGVFVDLDGVEGLVHISEIAWEKVSHPSNYFKVGQKIKVMVLGVDEESNKLALSV 286
Query: 128 KQLEEDPLLETLEKVIP 144
K+L +P ET+E+ P
Sbjct: 287 KKLIPNP-WETVEEKYP 302
>gi|343519795|ref|ZP_08756771.1| putative 30S ribosomal protein S1 [Haemophilus pittmaniae HK 85]
gi|343392351|gb|EGV04920.1| putative 30S ribosomal protein S1 [Haemophilus pittmaniae HK 85]
Length = 321
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
>gi|329766865|ref|ZP_08258393.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
gi|328837590|gb|EGF87215.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
Length = 419
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 77/141 (54%), Gaps = 13/141 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V VI ++E +K+ S K + W + + D+ G +GAF+ +
Sbjct: 271 GDTVKVAVIAVDKENEKISLSAKTLLPTQWEVARATIKAGDVLEGVVRNTTAFGAFVEV- 329
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S D + ++ D+L +GD+V VKV++ D E R++LSIK+L E P
Sbjct: 330 ----LPEVEGLVHISQISHDRVTNVEDVLKKGDKVTVKVLEFDFESERLSLSIKELLEKP 385
Query: 135 LLETLEKVIPQDGSVISDSSS 155
+ E +++ D S + D +
Sbjct: 386 VKEEVKEEAEYDTSYLKDEDT 406
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 22/160 (13%)
Query: 14 IHEIAKGLTGSIISVKVIQANEEMKKLV-----FSEKDAVWNKYSSRVNVEDIFVGRDYG 68
I E+ K I++ +VI E+ KKL +E D + K S R+ D+G
Sbjct: 189 IEEVDKSKNKIILNRRVILEEEKAKKLAEVYGNINEGDVIEGKVS-RIT--------DFG 239
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+++ DGL +H+SE+S ++ + D+++ GD V+V VI +D+E +I+LS K
Sbjct: 240 AFVNIGEVDGL------LHISEISHARVEKVSDVISVGDTVKVAVIAVDKENEKISLSAK 293
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
L P + + + G V+ +++ +E LP
Sbjct: 294 TLL--PTQWEVARATIKAGDVLEGVVRNTTAFGAFVEVLP 331
>gi|67923044|ref|ZP_00516537.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855123|gb|EAM50389.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 345
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLE 131
KQLE
Sbjct: 265 KQLE 268
>gi|338999915|ref|ZP_08638551.1| 30S ribosomal protein S1 [Halomonas sp. TD01]
gi|338763336|gb|EGP18332.1| 30S ribosomal protein S1 [Halomonas sp. TD01]
Length = 558
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEINVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G D+G FI L + GLVH+S++SW + +R+
Sbjct: 354 WETFNAEYNKGDRVSGTIKSITDFGIFIGLE-----GGIDGLVHLSDISWTETGEEAVRN 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
+GDE ++ ID E+ RI+L IKQ++ DP+ E L + GS+++
Sbjct: 409 -FKKGDEAEAVILSIDPERERISLGIKQMDSDPVAEYLS--VNDKGSIVT 455
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ ++ SE+S D I+D R++LNEGD + +++ +DR+ +I LS+K E+D + L+K
Sbjct: 474 VIAILKASEISADRIEDARNVLNEGDSIEARIVSVDRKSRQINLSVKAKEQDDTRQNLKK 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 LRDQE 538
>gi|330719102|ref|ZP_08313702.1| SSU ribosomal protein S1P [Leuconostoc fallax KCTC 3537]
Length = 395
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 20/157 (12%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-------NVEDIFVGR-----DYGAFIHL 73
I +VI+ + +L+ S K + +++ ++ +V ++ G D+GAFI L
Sbjct: 157 IKAQVIEIDPAKSRLILSRKAVIAQEHAEKIAEVFGKLSVGEVVEGTVARLADFGAFIDL 216
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL VHVSE+S+D +++ D+L+ G++V VK++ +D EK RI+LSIK +
Sbjct: 217 GGVDGL------VHVSEISYDRVKNPADVLSRGEKVNVKILALDEEKGRISLSIKATQPG 270
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P + E+ P G+V+ + +E PG+
Sbjct: 271 PWDKVAEEA-PA-GTVLEGTVKRVKDFGAFVEIFPGI 305
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 19/164 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G ++VK++ +EE ++ S K W+K + + G +D+GAF+ +
Sbjct: 243 GEKVNVKILALDEEKGRISLSIKATQPGPWDKVAEEAPAGTVLEGTVKRVKDFGAFVEI- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GL+HVS++S +++ D+L GD+V+V+V+ + + RI+LS+K LEE P
Sbjct: 302 FP----GIEGLIHVSQISHKRVENPADVLKSGDKVKVQVLDVKPAEERISLSMKALEEKP 357
Query: 135 LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELL 178
E +D + + +++ N E LG IF + L
Sbjct: 358 AHEE------EDNDGRASRADIAAYNQQDDESGATLGDIFGDKL 395
>gi|323143254|ref|ZP_08077948.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
gi|322417016|gb|EFY07656.1| ribosomal protein S1 [Succinatimonas hippei YIT 12066]
Length = 557
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE+ R++L
Sbjct: 203 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERQRVSL 256
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 257 GLKQLGADP 265
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 19/162 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G +++VKV++ +EE +++ K W +++ + D G+
Sbjct: 313 KNIHPSKVVSVGDVVTVKVLEIDEERRRISLGLKQCKPNPWLQFAESHSKGDRVTGKIKS 372
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + +R+ +GDE+ V+++D E+
Sbjct: 373 ITDFGIFIGLE-----GGIDGLVHLSDISWQQSGEEAVRE-FKKGDEITAVVLQVDPERE 426
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDS-SSMSSSNSN 162
RI+L +KQ+EEDP + L GS++S + S+ + +N
Sbjct: 427 RISLGLKQIEEDPFADYLS--THHKGSIVSGTVESVDARGAN 466
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK---QLEEDPLLET 138
+ G + S+ S D ++D +L EGD V K++ +DR+ ++TLSI+ + EE LE
Sbjct: 473 VVGYIRASDCSRDRVEDATTVLKEGDSVEAKLVNVDRKTRQLTLSIRAKDEAEEKEALEN 532
Query: 139 LEK 141
L K
Sbjct: 533 LNK 535
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 16/128 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E +++ K W ++R + G+ DYG F+ ++
Sbjct: 237 GDEITVKVLKFDRERQRVSLGLKQLGADPWADIAARFPIGSNIEGKVTNLTDYGCFVEIQ 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GD V VKV++ID E+ RI+L +KQ +
Sbjct: 297 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSVGDVVTVKVLEIDEERRRISLGLKQCKP 350
Query: 133 DPLLETLE 140
+P L+ E
Sbjct: 351 NPWLQFAE 358
>gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
gi|116511651|ref|YP_808867.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris SK11]
gi|125624515|ref|YP_001032998.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|281491326|ref|YP_003353306.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis KF147]
gi|385830375|ref|YP_005868188.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
gi|385838684|ref|YP_005876314.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris A76]
gi|389854887|ref|YP_006357131.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|418039269|ref|ZP_12677575.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723763|gb|AAK04936.1|AE006317_5 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403]
gi|116107305|gb|ABJ72445.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. cremoris SK11]
gi|124493323|emb|CAL98296.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
MG1363]
gi|281375067|gb|ADA64585.1| SSU ribosomal protein S1P [Lactococcus lactis subsp. lactis KF147]
gi|300071309|gb|ADJ60709.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|326406383|gb|ADZ63454.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis CV56]
gi|354692385|gb|EHE92215.1| hypothetical protein LLCRE1631_02382 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|358749912|gb|AEU40891.1| SSU ribosomal protein S1p [Lactococcus lactis subsp. cremoris A76]
gi|374672879|dbj|BAL50770.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis IO-1]
Length = 408
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 20/140 (14%)
Query: 4 SHS-CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVE 59
SHS K P ++ G +++VK+++ + E +L S K W + + V
Sbjct: 227 SHSRIKRPSDAVK------PGDVVNVKILKLDPEAGRLSLSLKATQPGPWEQVEEKAPVG 280
Query: 60 DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114
G D+GAF+ L +P + GLVHVS++SW+ +++ +D+L G V VKV+
Sbjct: 281 STVEGTVKRLTDFGAFVEL-YP----GVEGLVHVSQISWERVENPKDVLKVGQVVNVKVL 335
Query: 115 KIDREKSRITLSIKQLEEDP 134
+ + RI+LSIK LEE P
Sbjct: 336 DVKPAEERISLSIKALEEAP 355
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFS-----EKDAVWNKYSSRVNVE--DIFVGR-----D 66
K G I K+I+ N + + S E +A+ + + ++ DI G +
Sbjct: 148 KKFVGEEIEAKIIEVNASENRFILSRRAVVEAEAIEMRKEAFAQLQEGDIVEGTVSRVTN 207
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF+ L DGL VHVSE+S I+ D + GD V VK++K+D E R++LS
Sbjct: 208 FGAFVDLGGIDGL------VHVSELSHSRIKRPSDAVKPGDVVNVKILKLDPEAGRLSLS 261
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+K + P + EK + + S+ T++ L GA E
Sbjct: 262 LKATQPGPWEQVEEK------------APVGSTVEGTVKRLTDFGAFVE 298
>gi|416402894|ref|ZP_11687458.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
gi|357261819|gb|EHJ11043.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
Length = 358
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + +G + Y
Sbjct: 164 STREAKEDLVGEQLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 223
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + DE++V +I +D E+ RI+LS
Sbjct: 224 GAFIDIG------GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLST 277
Query: 128 KQLE 131
KQLE
Sbjct: 278 KQLE 281
>gi|255556496|ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
gi|223541597|gb|EEF43146.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
Length = 412
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 21/154 (13%)
Query: 31 IQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGL 85
+ +EE +LV S + A+ + +++ + + +G + YGAFI + + GL
Sbjct: 236 VDVDEEQSRLVLSNRKAMADS-QAQLGIGSVVIGTVQSLKPYGAFIDI------GGINGL 288
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP---------LL 136
+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P +
Sbjct: 289 LHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVF 348
Query: 137 ETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
E E++ I+ + +M+ ++ +P GL
Sbjct: 349 EKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 382
>gi|315633973|ref|ZP_07889262.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393]
gi|315477223|gb|EFU67966.1| 30S ribosomal protein S1 [Aggregatibacter segnis ATCC 33393]
Length = 548
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKANPWAQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEIIVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKANPWAQFAE 359
>gi|32491233|ref|NP_871487.1| 30S ribosomal protein S1 [Wigglesworthia glossinidia endosymbiont
of Glossina brevipalpis]
gi|25166440|dbj|BAC24630.1| rpsA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 554
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 7/81 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W ++ +I++ GDE+ VK++K D+EK+R++L
Sbjct: 204 DYGAFIDLGGVDGLLHIT------DMAWKRVKHPNEIVSIGDEITVKILKFDKEKTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQD 146
+KQL +DP +E + K P++
Sbjct: 258 GLKQLGQDPWIE-ISKRYPEN 277
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++V V+ +EE +++ K W +S D GR
Sbjct: 313 NKNIHPSKVVNVGDTVNVLVLDIDEERRRISLGLKQCKPNPWKNFSKLNKKGDKVQGRIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S+VSW++ ++ +GD + V+++D ++
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDVSWNIQGEEAVKEYKKGDIISAMVLQVDSDRE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL EDP
Sbjct: 428 RISLGIKQLSEDPF 441
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVH+SE+ W ++I ++N GD V V V+ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHISEMDW-TNKNIHPSKVVNVGDTVNVLVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKPNP 353
>gi|312864811|ref|ZP_07725042.1| putative ribosomal protein S1 [Streptococcus downei F0415]
gi|311099938|gb|EFQ58151.1| putative ribosomal protein S1 [Streptococcus downei F0415]
Length = 400
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ +EE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIDVKVLAIDEEAGRISLSLKATTPGPWDGVEQKLAAGDVIDGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G EV+VKV+ +D + R++LSIK L+E P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQEVQVKVLSVDADAERVSLSIKALQERP 354
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G I K+ + + + + S ++ V K + S++ V I G+ +G
Sbjct: 149 FVGQDIEAKIKEIDPAENRFILSRREVVEEKNAAARQEIFSKLEVGSIVTGKVARLTSFG 208
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL VHV+E+S + + +++ GDE+ VKV+ ID E RI+LS+K
Sbjct: 209 AFVDLGGVDGL------VHVTELSHERNVSPKSVVSVGDEIDVKVLAIDEEAGRISLSLK 262
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P +K+ G VI + + +E LPG+
Sbjct: 263 ATTPGPWDGVEQKLAA--GDVIDGTVKRLTDFGAFVEVLPGI 302
>gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
gi|335996765|ref|ZP_08562682.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
gi|417974259|ref|ZP_12615080.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
gi|335351835|gb|EGM53326.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
gi|346329256|gb|EGX97554.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
Length = 395
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K++V E++A ++ V D+ G+ ++GAFI L DGL VHVSE+S
Sbjct: 176 KEIVQQEREANKKAVLDKLVVGDVVEGKVARLTNFGAFIDLGGVDGL------VHVSEIS 229
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
++ + D+L G +V+VKV+ +D EK RI+LSIKQ P EKV +G V+
Sbjct: 230 FERVGKPSDVLKVGQDVKVKVLAVDPEKDRISLSIKQTLPQPWDNITEKV--AEGDVLEG 287
Query: 153 SSSMSSSNSNTIEPLPGL 170
+ +S +E PG+
Sbjct: 288 TVKRLTSFGAFVEVFPGV 305
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E ++ S K + W+ + +V D+ G +GAF+ +
Sbjct: 242 VGQDVKVKVLAVDPEKDRISLSIKQTLPQPWDNITEKVAEGDVLEGTVKRLTSFGAFVEV 301
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I ++L G++V+VKV+ ++ E+ R+ LSIK L+E
Sbjct: 302 -FP----GVEGLVHISQISHKHIATPNEVLASGEKVKVKVLNVNAEEHRLALSIKALQEK 356
Query: 134 PLLE 137
P E
Sbjct: 357 PAAE 360
>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
Length = 410
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRV----NVEDIFVGR-----DYGAF 70
G I K+I+ N +L+ S +D + + S SRV +V D+ G+ ++GAF
Sbjct: 157 GQTIRAKIIEINAADSRLILSRRDVLNEERSEALSRVFNELSVGDVVEGKVARMTNFGAF 216
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL VHVSE+S + + D+L+ G+EV+VKV+ +D EK RI+LSIK
Sbjct: 217 IDLGGVDGL------VHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKAT 270
Query: 131 EEDP 134
+ P
Sbjct: 271 QPGP 274
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + FP + GLVHVS++S I + D+L GD+V+VKV++++ +K R++L
Sbjct: 297 DFGAFVEV-FP----GVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSL 351
Query: 126 SIKQLEEDPLLE 137
SIK LEE P E
Sbjct: 352 SIKALEEAPARE 363
>gi|325289809|ref|YP_004265990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Syntrophobotulus glycolicus DSM 8271]
gi|324965210|gb|ADY55989.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Syntrophobotulus glycolicus DSM 8271]
Length = 662
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWN-------KYSSRVNVEDIFVG-----RDYG 68
G + +++I+ +E KKLV S+K + K + + D+ G D+G
Sbjct: 425 FVGQTLRLRIIEFDEGKKKLVLSQKAILAEEREQEKEKLFATIKEGDVVQGVVRRLTDFG 484
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +HVS++++ + + DI+N GDEV V++I +D+ K RI+L +K
Sbjct: 485 AFIDLGGVDGL------LHVSDMAFSRVSNPSDIVNIGDEVEVQIISVDQSKGRISLGLK 538
Query: 129 QLEEDP 134
QL+ +P
Sbjct: 539 QLKTNP 544
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF+ L DG+ L+H+S+++ + + +++ GD + K+I+ E+ RI+LS
Sbjct: 568 FGAFVQLE--DGI---DALIHISQLADRRVGKVDEVVKIGDVIEAKIIECKPEEKRISLS 622
Query: 127 IKQLEED 133
I++L D
Sbjct: 623 IRELIAD 629
>gi|172035135|ref|YP_001801636.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|171696589|gb|ACB49570.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
Length = 359
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + +G + Y
Sbjct: 174 STREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 233
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + DE++V +I +D E+ RI+LS
Sbjct: 234 GAFIDIG------GVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLST 287
Query: 128 KQLE 131
KQLE
Sbjct: 288 KQLE 291
>gi|302781194|ref|XP_002972371.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
gi|300159838|gb|EFJ26457.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
Length = 1634
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIH 72
K ++G I+SV+ + + EM L S++ + W + + DI GR +G F+
Sbjct: 1148 GKLVSGRILSVRPLSGHVEMS-LTTSQESSSWKTFCA----GDIVSGRIRSIEAFGMFVA 1202
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ--L 130
L DG+ GL HVSEVS D IQD+ + G V+VK++K+D E RI+L +K L
Sbjct: 1203 LADSDGV----GLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAETKRISLGMKASYL 1258
Query: 131 EEDPLLETLEK 141
D LET+++
Sbjct: 1259 TPDDGLETMDE 1269
>gi|406947536|gb|EKD78447.1| RNA binding S1 protein [uncultured bacterium]
Length = 388
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 15/122 (12%)
Query: 28 VKVIQANEEMKKLVFSEKDAVWNKYSSRV---NVEDIFVGR-----DYGAFIHLRFPDGL 79
VKVI +E +KL+ SEK A + ++ V D G+ D+GAF+ F D
Sbjct: 173 VKVIDVDEVDEKLIVSEKMAKAEQQQEKIAQYKVGDSIAGKVTGVVDFGAFV--EFGD-- 228
Query: 80 YHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+L GLVH+SE++W I D ++ L GD+V+ ++I ID K I+LSI+ L DP LE
Sbjct: 229 -NLEGLVHISEIAWQRIDDPKEYLKVGDDVKAQIIAIDNGK--ISLSIRNLIADPWLEVA 285
Query: 140 EK 141
+
Sbjct: 286 AR 287
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W + ++R + ++ G+ +GAF+ L D H GL H+SE+S+ + +IL
Sbjct: 281 WLEVAARYKIGEVVRGKVLKLNPFGAFVEL---DSDIH--GLAHISELSYRKLNAPSEIL 335
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQL 130
GD K+I I+ K R+ LS K L
Sbjct: 336 KIGDVYDFKIISIEPGKHRLGLSYKSL 362
>gi|342218637|ref|ZP_08711247.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
gi|341589507|gb|EGS32782.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
Length = 636
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YGAF+ L + GL+H+S++SW I + D+L+ GD V V + DRE++RI+LS
Sbjct: 486 YGAFVDLG------GVEGLLHISDISWKRINTVEDVLSVGDTVHALVQQFDRERNRISLS 539
Query: 127 IKQLEEDPLLETLEK 141
IK L+++P +E +EK
Sbjct: 540 IKALQKNPWIEAIEK 554
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+ GL+H+SE++ ++DI+ GD ++VK+IKID +K +++LS
Sbjct: 581 IQGLLHISELTPQRGVAVKDIVQIGDTMKVKIIKIDPDKHKVSLS 625
>gi|339481937|ref|YP_004693723.1| 30S ribosomal protein S1 [Nitrosomonas sp. Is79A3]
gi|338804082|gb|AEJ00324.1| ribosomal protein S1 [Nitrosomonas sp. Is79A3]
Length = 570
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ +++N GDEV KV+K D+EK+R++L
Sbjct: 214 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVVNIGDEVTAKVLKFDQEKNRVSL 267
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 268 GMKQLSEDP 276
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V +++ +EE +++ K W ++S+ D G+ D+G FI L
Sbjct: 335 GDEVEVMILEIDEERRRISLGMKQCQTNPWEEFSANHEKGDKVRGQIKSITDFGVFIGL- 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREKSRITLSIKQLEE 132
P ++ GLVH+S++SW+ + +LN +GDE+ ++ ID E+ RI+L IKQ+E
Sbjct: 394 -PG---NIDGLVHLSDLSWNHPGE-EAVLNYKKGDEIEAIILSIDVERERISLGIKQMEG 448
Query: 133 DPL 135
DP
Sbjct: 449 DPF 451
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++ KV++ ++E ++ K + W S R G+ DYGAFI +
Sbjct: 248 GDEVTAKVLKFDQEKNRVSLGMKQLSEDPWVGLSRRYPARTRLFGKVTNLTDYGAFIEIE 307
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ I+ GDEV V +++ID E+ RI+L +KQ +
Sbjct: 308 -----QGIEGLVHVSEMDW-TNKNVYPSKIVQLGDEVEVMILEIDEERRRISLGMKQCQT 361
Query: 133 DP 134
+P
Sbjct: 362 NP 363
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
G + SEVS D ++DIR L EGD+V +I +DR+ I LSIK ++ ++K+
Sbjct: 486 GYLRASEVSRDRVEDIRTHLKEGDKVETMIINVDRKNRTINLSIKAKDKSDESSAMQKI 544
>gi|57239341|ref|YP_180477.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
gi|57161420|emb|CAH58344.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
Length = 565
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 106
Y S++N DI G+ YG FI + + + GL+H++++SW + + + G
Sbjct: 223 YLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVNHPSAVFSCG 282
Query: 107 DEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQD 146
VR K+IKIDRE +I+L +KQLEE P +EK P D
Sbjct: 283 QTVRTKIIKIDRENKKISLGVKQLEESP-WSNIEKKYPVD 321
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 73
G + K+I+ + E KK+ K ++ W+ + V+ + G +YG F+ L
Sbjct: 281 CGQTVRTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSVHKGIVTSIEEYGIFVEL 340
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSEVSW I + G+E++VKV+ ID KSR++LS+K+ ++
Sbjct: 341 EV-----GIEGLVHVSEVSWTKSSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQD 395
Query: 133 DP 134
+P
Sbjct: 396 NP 397
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 72
+ G I VKV+ + ++ S K D W ++ + + I + + + G F+
Sbjct: 367 MRGEEIQVKVLSIDTAKSRMSLSMKRCQDNPWEAFTLKYPLGSIVLTKVKNITNLGIFVS 426
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIR-DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ + GL+ ++E+SW L + + GD + K++ I+ KS+I L IKQLE
Sbjct: 427 FQDETLNSGIEGLIRITELSWSLPPEAAVKKYSIGDSIEAKILMINTNKSKIDLGIKQLE 486
Query: 132 EDPLLETLEK 141
DP L+ L++
Sbjct: 487 YDPFLDLLKR 496
>gi|182414675|ref|YP_001819741.1| 30S ribosomal protein S1 [Opitutus terrae PB90-1]
gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1]
Length = 557
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSS--RVNV 58
M SH +P K++ + G KV++ N E K +V S ++ + + ++ R +
Sbjct: 126 MPASHIDVQPPKNLDQ----YVGQTYDFKVLKINLERKNIVLSRRELIEEQRTNKRRALL 181
Query: 59 EDIFVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
+ I G+ D+GAFI L DG+ GL+H++++SW I ++L +G+E
Sbjct: 182 DSIQPGQIRRGVVKNITDFGAFIDL---DGM---DGLLHITDMSWGRISHPSEMLKQGEE 235
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDP 134
V+V +I+++REK R++L +KQ ++P
Sbjct: 236 VQVMIIEVNREKERVSLGLKQTTKNP 261
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W+ + + D+ G +GAF+ L+ DG+ GLVH+S++S + I ++D+L
Sbjct: 436 WSDIDAHFRIGDVVTGTVTKLTSFGAFVELK--DGI---DGLVHISQISEERIDKVKDVL 490
Query: 104 NEGDEVRVKVIKIDREKSRITLSIK 128
G +V +VIKIDRE+ R+ LSIK
Sbjct: 491 KPGQQVTARVIKIDREERRLGLSIK 515
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAFI L + G+VHVS++SW + +IL +GDEV V+ +D ++ RI+L
Sbjct: 372 YGAFIELE-----EGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQRISL 426
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 427 GMKQLATDP 435
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V +I+ N E +++ K W++ + V G+ YGAF+ +
Sbjct: 233 GEEVQVMIIEVNREKERVSLGLKQTTKNPWDEIDRKYPVGAKVHGKVVNLVPYGAFVEIE 292
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH++E+SW I ++L G E+ V+ I +E+ +I+L ++QLE +
Sbjct: 293 -----PGVEGLVHITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLEPN 347
Query: 134 P 134
P
Sbjct: 348 P 348
>gi|56311965|emb|CAI06610.1| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
Length = 591
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++LN GDE+ KV+K D+EK+R++L
Sbjct: 235 DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVSL 288
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 289 GLKQLGEDP 297
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V +++ +E+ +++ K + W+ ++ D G+
Sbjct: 344 NKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIK 403
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW D ++ +GDEV V+ ID E+
Sbjct: 404 SITDFGVFIGL---DG--GIDGLVHLSDLSWSDTGEEAVRRFKKGDEVEAVVLAIDVERE 458
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQLE DP
Sbjct: 459 RISLGVKQLEGDPF 472
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI
Sbjct: 320 DYGAFVEVE-----QGIEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRI 373
Query: 124 TLSIKQLEEDP 134
+L +KQ +P
Sbjct: 374 SLGMKQCMSNP 384
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE + + D+ +L EG EV V +I +DR+ I LSI+ ++ + ++K
Sbjct: 507 GYLRASEAAAHRVDDLTTVLKEGQEVEVMIINVDRKTRSINLSIRAKDQAEQSDAMQK-- 564
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
SDSS+ S + + LGA+ + L E
Sbjct: 565 -----FASDSSAASGTTN--------LGALLKAKLNE 588
>gi|58579307|ref|YP_197519.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
gi|58617361|ref|YP_196560.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel]
gi|58416973|emb|CAI28086.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Gardel]
gi|58417933|emb|CAI27137.1| 30S ribosomal protein S1 [Ehrlichia ruminantium str. Welgevonden]
Length = 567
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 106
Y S++N DI G+ YG FI + + + GL+H++++SW + + + G
Sbjct: 225 YLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVNHPSAVFSCG 284
Query: 107 DEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQD 146
VR K+IKIDRE +I+L +KQLEE P +EK P D
Sbjct: 285 QTVRTKIIKIDRENKKISLGVKQLEESP-WSNIEKKYPVD 323
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 73
G + K+I+ + E KK+ K ++ W+ + V+ + G +YG F+ L
Sbjct: 283 CGQTVRTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSVHKGIVTSIEEYGIFVEL 342
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSEVSW I + G+E++VKV+ ID KSR++LS+K+ ++
Sbjct: 343 EV-----GIEGLVHVSEVSWTKSSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQD 397
Query: 133 DP 134
+P
Sbjct: 398 NP 399
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIH 72
+ G I VKV+ + ++ S K D W ++ + + I + + + G F+
Sbjct: 369 MRGEEIQVKVLSIDTAKSRMSLSMKRCQDNPWEAFTLKYPLGSIVLTKVKNITNLGIFVS 428
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIR-DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ + GL+ ++E+SW L + + GD + K++ I+ KS+I L IKQLE
Sbjct: 429 FQDETLNSGIEGLIRITELSWSLPPEAAVKKYSIGDSIEAKILMINTNKSKIDLGIKQLE 488
Query: 132 EDPLLETLEK 141
DP L+ L++
Sbjct: 489 YDPFLDLLKR 498
>gi|405761005|ref|YP_006701601.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SPNA45]
gi|404277894|emb|CCM08456.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae SPNA45]
Length = 400
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE +L S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRLSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAF+ L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFVDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRLSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|262375356|ref|ZP_06068589.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
gi|262309610|gb|EEY90740.1| ribosomal protein S1 [Acinetobacter lwoffii SH145]
gi|407007266|gb|EKE22974.1| hypothetical protein ACD_6C00657G0006 [uncultured bacterium]
Length = 558
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMNR 273
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKDHDKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L P G+ GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGL--PGGI---DGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQ+ DP
Sbjct: 427 NRISLGIKQMNNDPF 441
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 22/125 (17%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSS----RVNVEDIFVGRDYGAFI 71
G ++VKV++ + E ++ K A+ N+Y + V ++ DYG F
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNL---TDYGCFA 294
Query: 72 HLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQ 129
+ + GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 295 EI-----AEGVEGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348
Query: 130 LEEDP 134
+P
Sbjct: 349 TRANP 353
>gi|325983541|ref|YP_004295943.1| 30S ribosomal protein S1 [Nitrosomonas sp. AL212]
gi|325533060|gb|ADZ27781.1| ribosomal protein S1 [Nitrosomonas sp. AL212]
Length = 570
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ +++N GDEV KV+K D+EK+R++L
Sbjct: 214 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVVNIGDEVTAKVLKFDQEKNRVSL 267
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 268 GMKQLSEDP 276
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++ KV++ ++E ++ K + W S R G+ DYGAFI +
Sbjct: 248 GDEVTAKVLKFDQEKNRVSLGMKQLSEDPWVGLSRRYPARTRLFGKVTNLTDYGAFIEIE 307
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ I+ GDEV V +++ID E+ RI+L +KQ +
Sbjct: 308 -----QGIEGLVHVSEMDW-TNKNVYPSKIVQLGDEVEVMILEIDEERRRISLGMKQCQT 361
Query: 133 DP 134
+P
Sbjct: 362 NP 363
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V +++ +EE +++ K W ++++ + G+ D+G FI L
Sbjct: 335 GDEVEVMILEIDEERRRISLGMKQCQTNPWEEFAATHDKNAKVRGQIKSITDFGVFIGL- 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREKSRITLSIKQLEE 132
P ++ GLVH+S++SW+ + +LN +GDEV ++ ID E+ RI+L IKQ+E
Sbjct: 394 -PG---NIDGLVHLSDLSWNQPGE-EAVLNYKKGDEVEAMILSIDVERERISLGIKQMEG 448
Query: 133 DPL 135
DP
Sbjct: 449 DPF 451
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA I L + + G + SEVS D ++DIR L EGD + +I +DR+ I LSI
Sbjct: 475 GAVIAL-----THDIEGYLRASEVSRDRVEDIRTFLKEGDTIETMIINVDRKNRTINLSI 529
Query: 128 KQLEEDPLLETLEKV 142
K ++ ++K+
Sbjct: 530 KAKDKSDESSAMQKI 544
>gi|224099083|ref|XP_002311368.1| predicted protein [Populus trichocarpa]
gi|118485696|gb|ABK94698.1| unknown [Populus trichocarpa]
gi|222851188|gb|EEE88735.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 21/157 (13%)
Query: 28 VKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHL 82
+K + +EE +L+ S + A+ + +++ + + G + YGAFI + +
Sbjct: 232 LKFVDVDEEQSRLILSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDI------GGI 284
Query: 83 TGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP-------- 134
GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 285 NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPK 344
Query: 135 -LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 345 LVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 381
>gi|386286363|ref|ZP_10063553.1| 30S ribosomal protein S1 [gamma proteobacterium BDW918]
gi|385280513|gb|EIF44435.1| 30S ribosomal protein S1 [gamma proteobacterium BDW918]
Length = 560
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 49/69 (71%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +H+++++W I+ +I+N GDE+ V+++K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGL------LHITDMAWKRIKHPSEIVNVGDEIDVRILKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K+IH G + V ++ +EE +++ K W+ + + D G
Sbjct: 313 NKNIHPSKVVNVGDEVEVMILDIDEERRRISLGIKQCQQNPWDAFGGQFTKGDKIKGAIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG ++ GLVH+S++SW+ + +R +GDE+ ++ ID E+
Sbjct: 373 SITDFGIFIGL---DG--NIDGLVHLSDISWNETGEEAVRK-FKKGDEIETVILSIDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 427 ERISLGIKQLEDDPF 441
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F + + GLVHVSE+ W ++I ++N GDEV V ++ ID E+ RI
Sbjct: 289 DYGCFAEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMILDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +++P
Sbjct: 343 SLGIKQCQQNP 353
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ G++ SE+S D ++D R++L G+ V VK+I +DR+ +TLSIK + D E ++
Sbjct: 473 EVEGVLKASEISRDKVEDARNVLKVGETVEVKIISVDRKNRAMTLSIKAKDVDDEKEAVK 532
Query: 141 KVIPQDGSVISDSSSMS 157
+ +D ++ ++++
Sbjct: 533 SLREKDTETVAPATTIG 549
>gi|389706193|ref|ZP_10186283.1| 30S ribosomal protein S1 [Acinetobacter sp. HA]
gi|388610670|gb|EIM39785.1| 30S ribosomal protein S1 [Acinetobacter sp. HA]
Length = 558
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNHDKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L P G+ GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGL--PGGI---DGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 ----AEGVEGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|354555643|ref|ZP_08974943.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|353552293|gb|EHC21689.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 336
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + +G + Y
Sbjct: 151 STREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + DE++V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFGVNDELKVMIIDLDAERGRISLST 264
Query: 128 KQLE 131
KQLE
Sbjct: 265 KQLE 268
>gi|161350051|ref|YP_157511.2| 30S ribosomal protein S1 [Aromatoleum aromaticum EbN1]
Length = 569
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++LN GDE+ KV+K D+EK+R++L
Sbjct: 213 DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLNVGDEIDAKVLKFDQEKNRVSL 266
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 267 GLKQLGEDP 275
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V +++ +E+ +++ K + W+ ++ D G+
Sbjct: 322 NKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIK 381
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW D ++ +GDEV V+ ID E+
Sbjct: 382 SITDFGVFIGL---DG--GIDGLVHLSDLSWSDTGEEAVRRFKKGDEVEAVVLAIDVERE 436
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQLE DP
Sbjct: 437 RISLGVKQLEGDPF 450
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI
Sbjct: 298 DYGAFVEVE-----QGIEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRI 351
Query: 124 TLSIKQLEEDP 134
+L +KQ +P
Sbjct: 352 SLGMKQCMSNP 362
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE + + D+ +L EG EV V +I +DR+ I LSI+ ++ + ++K
Sbjct: 485 GYLRASEAAAHRVDDLTTVLKEGQEVEVMIINVDRKTRSINLSIRAKDQAEQSDAMQK-- 542
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
SDSS+ S + + LGA+ + L E
Sbjct: 543 -----FASDSSAASGTTN--------LGALLKAKLNE 566
>gi|402758088|ref|ZP_10860344.1| 30S ribosomal protein S1 [Acinetobacter sp. NCTC 7422]
Length = 560
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKANEKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGLS-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 ----AEGVEGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|406039430|ref|ZP_11046785.1| 30S ribosomal protein S1 [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMNR 273
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVED--------IF 62
K+IH G + V V++ +EE +++ K N + D I
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHDKGEKVSGTIK 372
Query: 63 VGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L P G+ GLVH+S++SW+ +D +GD V ++ +D E +
Sbjct: 373 SITDFGIFIGL--PGGI---DGLVHLSDISWNEQGEDAIRRYKKGDTVEAVILSVDAEGN 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL DP
Sbjct: 428 RISLGIKQLNSDPF 441
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 22/125 (17%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSS----RVNVEDIFVGRDYGAFI 71
G ++VKV++ + E ++ K A+ N+Y + V ++ DYG F
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMNRYPKGSIVKARVTNL---TDYGCFA 294
Query: 72 HLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQ 129
+ + GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 295 EI-----AEGVEGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348
Query: 130 LEEDP 134
+P
Sbjct: 349 TRANP 353
>gi|260913659|ref|ZP_05920135.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
gi|260632198|gb|EEX50373.1| 30S ribosomal protein S1 [Pasteurella dagmatis ATCC 43325]
Length = 549
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G ++ V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ + +R+ +GDEV V+++D K
Sbjct: 374 ITDFGIFIGLE-----GGIDGLVHLSDISWNASGEEAVRN-YKKGDEVAAVVLQVDAVKE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
RI+L IKQLEEDP + + + G+V+S
Sbjct: 428 RISLGIKQLEEDPFNNFV--AVNKKGAVLS 455
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ +++ ++ K W + VE G+ DYG F+ +
Sbjct: 238 GDEITVKVLKFDKDRTRVSLGLKQLGQDPWVAIAENHPVESKLTGKVTNLTDYGCFVEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI+L +KQ +
Sbjct: 297 ----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKP 351
Query: 133 DPLLETLE 140
+P L+ E
Sbjct: 352 NPWLQFAE 359
>gi|406913700|gb|EKD53045.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 360
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 16/123 (13%)
Query: 28 VKVIQANEEMKKLVFSEK-----DAVWNKYSSR--VNVEDIFVGR-----DYGAFIHLRF 75
V+VI+ +++ +L+FSEK +A+ K + VNV D F G +G F+ +
Sbjct: 155 VRVIEVDKDQNRLIFSEKLVSDSEALAKKGEALELVNVGDKFEGTVSGIMPFGVFVTVNV 214
Query: 76 P----DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
P + + + GL+H+SE+SW+ ++D + G EV V+VI ID+ ++ LSIKQ+
Sbjct: 215 PMKGTEEVAKVEGLIHISEISWEKVEDPNVMFKVGQEVHVQVIGIDKAVGKLNLSIKQMT 274
Query: 132 EDP 134
DP
Sbjct: 275 GDP 277
>gi|359429491|ref|ZP_09220515.1| 30S ribosomal protein S1 [Acinetobacter sp. NBRC 100985]
gi|358234952|dbj|GAB02054.1| 30S ribosomal protein S1 [Acinetobacter sp. NBRC 100985]
Length = 560
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSNEKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGLS-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 ----AEGVEGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|343525165|ref|ZP_08762121.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|423068486|ref|ZP_17057274.1| hypothetical protein HMPREF9682_00495 [Streptococcus intermedius
F0395]
gi|343397037|gb|EGV09573.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|355366741|gb|EHG14458.1| hypothetical protein HMPREF9682_00495 [Streptococcus intermedius
F0395]
Length = 399
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEDDQK 361
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V DI G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 GKLAVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|421793360|ref|ZP_16229487.1| ribosomal protein S1 [Acinetobacter baumannii Naval-2]
gi|410397167|gb|EKP49420.1| ribosomal protein S1 [Acinetobacter baumannii Naval-2]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E +RI
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEGNRI 429
Query: 124 TLSIKQLEEDPL 135
+L IKQL DP
Sbjct: 430 SLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|299770392|ref|YP_003732418.1| 30S ribosomal protein S1 [Acinetobacter oleivorans DR1]
gi|298700480|gb|ADI91045.1| 30S ribosomal protein S1 [Acinetobacter oleivorans DR1]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E +RI
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEGNRI 429
Query: 124 TLSIKQLEEDPL 135
+L IKQL DP
Sbjct: 430 SLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|169633382|ref|YP_001707118.1| 30S ribosomal protein S1 [Acinetobacter baumannii SDF]
gi|169796132|ref|YP_001713925.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
gi|213157134|ref|YP_002319179.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB0057]
gi|215483586|ref|YP_002325807.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
gi|239502184|ref|ZP_04661494.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB900]
gi|260555182|ref|ZP_05827403.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301345931|ref|ZP_07226672.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB056]
gi|301510602|ref|ZP_07235839.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB058]
gi|301597403|ref|ZP_07242411.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB059]
gi|332851786|ref|ZP_08433711.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
gi|332865834|ref|ZP_08436618.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
gi|332872776|ref|ZP_08440742.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
gi|384132038|ref|YP_005514650.1| hypothetical protein [Acinetobacter baumannii 1656-2]
gi|384143027|ref|YP_005525737.1| 30S ribosomal protein S1 [Acinetobacter baumannii MDR-ZJ06]
gi|385237384|ref|YP_005798723.1| 30S ribosomal protein S1 [Acinetobacter baumannii TCDC-AB0715]
gi|387124104|ref|YP_006289986.1| 30S ribosomal protein S1 [Acinetobacter baumannii MDR-TJ]
gi|403673992|ref|ZP_10936269.1| 30S ribosomal protein S1 [Acinetobacter sp. NCTC 10304]
gi|407932651|ref|YP_006848294.1| 30S ribosomal protein S1 [Acinetobacter baumannii TYTH-1]
gi|416145598|ref|ZP_11600550.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB210]
gi|417546481|ref|ZP_12197567.1| ribosomal protein S1 [Acinetobacter baumannii OIFC032]
gi|417552444|ref|ZP_12203514.1| ribosomal protein S1 [Acinetobacter baumannii Naval-81]
gi|417559918|ref|ZP_12210797.1| ribosomal protein S1 [Acinetobacter baumannii OIFC137]
gi|417564376|ref|ZP_12215250.1| ribosomal protein S1 [Acinetobacter baumannii OIFC143]
gi|417568190|ref|ZP_12219053.1| ribosomal protein S1 [Acinetobacter baumannii OIFC189]
gi|417572841|ref|ZP_12223695.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC-5]
gi|417578652|ref|ZP_12229485.1| ribosomal protein S1 [Acinetobacter baumannii Naval-17]
gi|417869863|ref|ZP_12514841.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH1]
gi|417873322|ref|ZP_12518196.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH2]
gi|417878539|ref|ZP_12523150.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH3]
gi|417881477|ref|ZP_12525795.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH4]
gi|421200345|ref|ZP_15657505.1| ribosomal protein S1 [Acinetobacter baumannii OIFC109]
gi|421203276|ref|ZP_15660418.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC12]
gi|421454040|ref|ZP_15903391.1| ribosomal protein S1 [Acinetobacter baumannii IS-123]
gi|421533985|ref|ZP_15980263.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC30]
gi|421621235|ref|ZP_16062158.1| ribosomal protein S1 [Acinetobacter baumannii OIFC074]
gi|421624759|ref|ZP_16065623.1| ribosomal protein S1 [Acinetobacter baumannii OIFC098]
gi|421629445|ref|ZP_16070177.1| ribosomal protein S1 [Acinetobacter baumannii OIFC180]
gi|421631660|ref|ZP_16072324.1| ribosomal protein S1 [Acinetobacter baumannii Naval-13]
gi|421645065|ref|ZP_16085539.1| ribosomal protein S1 [Acinetobacter baumannii IS-235]
gi|421648679|ref|ZP_16089082.1| ribosomal protein S1 [Acinetobacter baumannii IS-251]
gi|421652919|ref|ZP_16093267.1| ribosomal protein S1 [Acinetobacter baumannii OIFC0162]
gi|421653674|ref|ZP_16094007.1| ribosomal protein S1 [Acinetobacter baumannii Naval-72]
gi|421658263|ref|ZP_16098497.1| ribosomal protein S1 [Acinetobacter baumannii Naval-83]
gi|421661919|ref|ZP_16102089.1| ribosomal protein S1 [Acinetobacter baumannii OIFC110]
gi|421668793|ref|ZP_16108826.1| ribosomal protein S1 [Acinetobacter baumannii OIFC087]
gi|421672416|ref|ZP_16112373.1| ribosomal protein S1 [Acinetobacter baumannii OIFC099]
gi|421676447|ref|ZP_16116354.1| ribosomal protein S1 [Acinetobacter baumannii OIFC065]
gi|421678750|ref|ZP_16118634.1| ribosomal protein S1 [Acinetobacter baumannii OIFC111]
gi|421688196|ref|ZP_16127899.1| ribosomal protein S1 [Acinetobacter baumannii IS-143]
gi|421691005|ref|ZP_16130669.1| ribosomal protein S1 [Acinetobacter baumannii IS-116]
gi|421696916|ref|ZP_16136495.1| ribosomal protein S1 [Acinetobacter baumannii WC-692]
gi|421699724|ref|ZP_16139248.1| ribosomal protein S1 [Acinetobacter baumannii IS-58]
gi|421703465|ref|ZP_16142928.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1122]
gi|421707188|ref|ZP_16146587.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1219]
gi|421788621|ref|ZP_16224907.1| ribosomal protein S1 [Acinetobacter baumannii Naval-82]
gi|421796378|ref|ZP_16232442.1| ribosomal protein S1 [Acinetobacter baumannii Naval-21]
gi|421800329|ref|ZP_16236307.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC1]
gi|421802962|ref|ZP_16238906.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-694]
gi|421809378|ref|ZP_16245218.1| ribosomal protein S1 [Acinetobacter baumannii OIFC035]
gi|424052532|ref|ZP_17790064.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab11111]
gi|424060070|ref|ZP_17797561.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab33333]
gi|424064012|ref|ZP_17801497.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab44444]
gi|425748873|ref|ZP_18866855.1| ribosomal protein S1 [Acinetobacter baumannii WC-348]
gi|425751744|ref|ZP_18869686.1| ribosomal protein S1 [Acinetobacter baumannii Naval-113]
gi|445406828|ref|ZP_21432105.1| ribosomal protein S1 [Acinetobacter baumannii Naval-57]
gi|445441165|ref|ZP_21441988.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-92]
gi|445458814|ref|ZP_21447354.1| ribosomal protein S1 [Acinetobacter baumannii OIFC047]
gi|445469622|ref|ZP_21451279.1| ribosomal protein S1 [Acinetobacter baumannii OIFC338]
gi|445476224|ref|ZP_21453673.1| ribosomal protein S1 [Acinetobacter baumannii Naval-78]
gi|445488818|ref|ZP_21458427.1| ribosomal protein S1 [Acinetobacter baumannii AA-014]
gi|169149059|emb|CAM86936.1| 30S ribosomal protein S1 [Acinetobacter baumannii AYE]
gi|169152174|emb|CAP01077.1| 30S ribosomal protein S1 [Acinetobacter baumannii]
gi|193077207|gb|ABO11999.2| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
gi|213056294|gb|ACJ41196.1| ribosomal protein S1 [Acinetobacter baumannii AB0057]
gi|213986936|gb|ACJ57235.1| ribosomal protein S1 [Acinetobacter baumannii AB307-0294]
gi|260411724|gb|EEX05021.1| ribosomal protein S1 [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322508258|gb|ADX03712.1| rpsA [Acinetobacter baumannii 1656-2]
gi|323517884|gb|ADX92265.1| 30S ribosomal protein S1 [Acinetobacter baumannii TCDC-AB0715]
gi|332729793|gb|EGJ61128.1| ribosomal protein S1 [Acinetobacter baumannii 6013150]
gi|332735046|gb|EGJ66131.1| ribosomal protein S1 [Acinetobacter baumannii 6013113]
gi|332739073|gb|EGJ69934.1| ribosomal protein S1 [Acinetobacter baumannii 6014059]
gi|333366664|gb|EGK48678.1| 30S ribosomal protein S1 [Acinetobacter baumannii AB210]
gi|342229515|gb|EGT94381.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH1]
gi|342231796|gb|EGT96597.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH2]
gi|342232652|gb|EGT97425.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH3]
gi|342238872|gb|EGU03295.1| 30S ribosomal protein S1 [Acinetobacter baumannii ABNIH4]
gi|347593520|gb|AEP06241.1| 30S ribosomal protein S1 [Acinetobacter baumannii MDR-ZJ06]
gi|385878596|gb|AFI95691.1| ribosomal protein S1 [Acinetobacter baumannii MDR-TJ]
gi|395522500|gb|EJG10589.1| ribosomal protein S1 [Acinetobacter baumannii OIFC137]
gi|395554485|gb|EJG20487.1| ribosomal protein S1 [Acinetobacter baumannii OIFC189]
gi|395556132|gb|EJG22133.1| ribosomal protein S1 [Acinetobacter baumannii OIFC143]
gi|395563946|gb|EJG25598.1| ribosomal protein S1 [Acinetobacter baumannii OIFC109]
gi|395567790|gb|EJG28464.1| ribosomal protein S1 [Acinetobacter baumannii Naval-17]
gi|398327353|gb|EJN43489.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC12]
gi|400208409|gb|EJO39379.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC-5]
gi|400213448|gb|EJO44403.1| ribosomal protein S1 [Acinetobacter baumannii IS-123]
gi|400384369|gb|EJP43047.1| ribosomal protein S1 [Acinetobacter baumannii OIFC032]
gi|400392703|gb|EJP59749.1| ribosomal protein S1 [Acinetobacter baumannii Naval-81]
gi|404560649|gb|EKA65891.1| ribosomal protein S1 [Acinetobacter baumannii WC-692]
gi|404561943|gb|EKA67168.1| ribosomal protein S1 [Acinetobacter baumannii IS-143]
gi|404563156|gb|EKA68366.1| ribosomal protein S1 [Acinetobacter baumannii IS-116]
gi|404571425|gb|EKA76485.1| ribosomal protein S1 [Acinetobacter baumannii IS-58]
gi|404668022|gb|EKB35931.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab33333]
gi|404671982|gb|EKB39824.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab11111]
gi|404673901|gb|EKB41672.1| 30S ribosomal protein S1 [Acinetobacter baumannii Ab44444]
gi|407192259|gb|EKE63442.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1122]
gi|407192629|gb|EKE63806.1| 30S ribosomal protein S1 [Acinetobacter baumannii ZWS1219]
gi|407901232|gb|AFU38063.1| 30S ribosomal protein S1 [Acinetobacter baumannii TYTH-1]
gi|408504079|gb|EKK05831.1| ribosomal protein S1 [Acinetobacter baumannii IS-235]
gi|408504336|gb|EKK06087.1| ribosomal protein S1 [Acinetobacter baumannii OIFC0162]
gi|408513027|gb|EKK14665.1| ribosomal protein S1 [Acinetobacter baumannii Naval-72]
gi|408515513|gb|EKK17101.1| ribosomal protein S1 [Acinetobacter baumannii IS-251]
gi|408698534|gb|EKL44023.1| ribosomal protein S1 [Acinetobacter baumannii OIFC074]
gi|408700453|gb|EKL45904.1| ribosomal protein S1 [Acinetobacter baumannii OIFC098]
gi|408701431|gb|EKL46860.1| ribosomal protein S1 [Acinetobacter baumannii OIFC180]
gi|408710061|gb|EKL55297.1| ribosomal protein S1 [Acinetobacter baumannii Naval-83]
gi|408710721|gb|EKL55944.1| ribosomal protein S1 [Acinetobacter baumannii Naval-13]
gi|408715411|gb|EKL60539.1| ribosomal protein S1 [Acinetobacter baumannii OIFC110]
gi|409987972|gb|EKO44147.1| 30S ribosomal protein S1 [Acinetobacter baumannii AC30]
gi|410378927|gb|EKP31536.1| ribosomal protein S1 [Acinetobacter baumannii OIFC087]
gi|410379378|gb|EKP31982.1| ribosomal protein S1 [Acinetobacter baumannii OIFC099]
gi|410379514|gb|EKP32117.1| ribosomal protein S1 [Acinetobacter baumannii OIFC065]
gi|410392313|gb|EKP44675.1| ribosomal protein S1 [Acinetobacter baumannii OIFC111]
gi|410399305|gb|EKP51500.1| ribosomal protein S1 [Acinetobacter baumannii Naval-21]
gi|410401761|gb|EKP53897.1| ribosomal protein S1 [Acinetobacter baumannii Naval-82]
gi|410407826|gb|EKP59802.1| ribosomal protein S1 [Acinetobacter baumannii Canada BC1]
gi|410414260|gb|EKP66066.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-694]
gi|410415162|gb|EKP66954.1| ribosomal protein S1 [Acinetobacter baumannii OIFC035]
gi|425489854|gb|EKU56155.1| ribosomal protein S1 [Acinetobacter baumannii WC-348]
gi|425499751|gb|EKU65782.1| ribosomal protein S1 [Acinetobacter baumannii Naval-113]
gi|444765323|gb|ELW89622.1| ribosomal protein S1 [Acinetobacter baumannii WC-A-92]
gi|444767654|gb|ELW91901.1| ribosomal protein S1 [Acinetobacter baumannii AA-014]
gi|444774284|gb|ELW98372.1| ribosomal protein S1 [Acinetobacter baumannii OIFC338]
gi|444775223|gb|ELW99293.1| ribosomal protein S1 [Acinetobacter baumannii OIFC047]
gi|444777895|gb|ELX01915.1| ribosomal protein S1 [Acinetobacter baumannii Naval-78]
gi|444781475|gb|ELX05394.1| ribosomal protein S1 [Acinetobacter baumannii Naval-57]
gi|452950857|gb|EME56308.1| 30S ribosomal protein S1 [Acinetobacter baumannii MSP4-16]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E +RI
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEGNRI 429
Query: 124 TLSIKQLEEDPL 135
+L IKQL DP
Sbjct: 430 SLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|126641617|ref|YP_001084601.1| 30S ribosomal protein S1 [Acinetobacter baumannii ATCC 17978]
gi|184157939|ref|YP_001846278.1| 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
gi|183209533|gb|ACC56931.1| putative 30S ribosomal protein S1 [Acinetobacter baumannii ACICU]
Length = 479
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 126 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 179
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 180 GLKQLGEDPWLAIMSR 195
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + G
Sbjct: 235 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSHEKGEKVSGTIK 294
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 295 SITDFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 348
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 349 NRISLGIKQLNSDPF 363
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 160 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 218
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 219 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 273
Query: 133 DP 134
+P
Sbjct: 274 NP 275
>gi|424740953|ref|ZP_18169318.1| ribosomal protein S1 [Acinetobacter baumannii WC-141]
gi|422945299|gb|EKU40261.1| ribosomal protein S1 [Acinetobacter baumannii WC-141]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E +RI
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEGNRI 429
Query: 124 TLSIKQLEEDPL 135
+L IKQL DP
Sbjct: 430 SLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|307108388|gb|EFN56628.1| hypothetical protein CHLNCDRAFT_22007 [Chlorella variabilis]
Length = 327
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
++ KV + +EE +L+ S K V ++ V D+ G + YGAF+ +
Sbjct: 175 MAFKVTEVDEEKARLMLSNKRVVADERVGGFKVGDVVEGTVISVKPYGAFVDI------G 228
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+GL+H+S++S D I ++ +L+EGD ++V V+ DRE+ R+ L K+LE P
Sbjct: 229 GASGLLHISQISHDRITNVDKVLSEGDRIKVMVLSQDRERGRVALCTKKLEPTP 282
>gi|262278924|ref|ZP_06056709.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus RUH2202]
gi|262259275|gb|EEY78008.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus RUH2202]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E +RI
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEGNRI 429
Query: 124 TLSIKQLEEDPL 135
+L IKQL DP
Sbjct: 430 SLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|50085438|ref|YP_046948.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
gi|49531414|emb|CAG69126.1| 30S ribosomal protein S1 [Acinetobacter sp. ADP1]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L P G+ GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGL--PGGI---DGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 ----AEGVEGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|406872489|gb|EKD22984.1| RNA binding S1 protein, partial [uncultured bacterium]
Length = 267
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 12/124 (9%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-------VEDIFVG-RDYGAF 70
K L G + VK+I + KKL+FSEK A + +++ VE G D+G F
Sbjct: 13 KDLMGETLEVKIINFDSNAKKLIFSEKAAGDREQEEKLSQIKEGETVEGTVTGIVDFGIF 72
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + +G + GLVH+SE++W + ++ ++ GD+++V ++ D ++R++LS+K+L
Sbjct: 73 V--KIGEGKSEIEGLVHISEIAWGRVTNLTELYKVGDKIKVLIVSTD--ENRVSLSVKRL 128
Query: 131 EEDP 134
+ DP
Sbjct: 129 QNDP 132
>gi|260550112|ref|ZP_05824326.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
gi|424055757|ref|ZP_17793280.1| 30S ribosomal protein S1 [Acinetobacter nosocomialis Ab22222]
gi|425742714|ref|ZP_18860813.1| ribosomal protein S1 [Acinetobacter baumannii WC-487]
gi|445432607|ref|ZP_21439352.1| ribosomal protein S1 [Acinetobacter baumannii OIFC021]
gi|260406867|gb|EEX00346.1| ribosomal protein S1 [Acinetobacter sp. RUH2624]
gi|407438248|gb|EKF44792.1| 30S ribosomal protein S1 [Acinetobacter nosocomialis Ab22222]
gi|425485966|gb|EKU52345.1| ribosomal protein S1 [Acinetobacter baumannii WC-487]
gi|444758903|gb|ELW83393.1| ribosomal protein S1 [Acinetobacter baumannii OIFC021]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E +RI
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEGNRI 429
Query: 124 TLSIKQLEEDPL 135
+L IKQL DP
Sbjct: 430 SLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|218768323|ref|YP_002342835.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
gi|433479880|ref|ZP_20437170.1| ribosomal protein S1 [Neisseria meningitidis 63041]
gi|433520080|ref|ZP_20476800.1| ribosomal protein S1 [Neisseria meningitidis 65014]
gi|433541158|ref|ZP_20497610.1| ribosomal protein S1 [Neisseria meningitidis 63006]
gi|121052331|emb|CAM08662.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
gi|432216219|gb|ELK72101.1| ribosomal protein S1 [Neisseria meningitidis 63041]
gi|432254802|gb|ELL10136.1| ribosomal protein S1 [Neisseria meningitidis 65014]
gi|432277171|gb|ELL32220.1| ribosomal protein S1 [Neisseria meningitidis 63006]
Length = 561
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L G EV KV+K D+EK R++L
Sbjct: 205 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP L + PQD + S+++
Sbjct: 259 GMKQLGEDP-WSGLTRRYPQDTRLFGKVSNLT 289
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + KV++ ++E +++ K + W+ + R + G+ DYGAF+ +
Sbjct: 239 GQEVEAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQDTRLFGKVSNLTDYGAFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ ++ GDEV V +++ID + RI+L +KQ +
Sbjct: 299 -----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQA 352
Query: 133 DP 134
+P
Sbjct: 353 NP 354
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
G + SE + D ++D+ L EGDEV ++ +DR+ I LS+K + E L V
Sbjct: 477 GYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKDAKESREALNSV 535
>gi|418964829|ref|ZP_13516617.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
constellatus SK53]
gi|383344230|gb|EID22399.1| 30S ribosomal protein S1 [Streptococcus constellatus subsp.
constellatus SK53]
Length = 399
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEDDQK 361
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V DI +G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 GKLAVGDIVIGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|373460261|ref|ZP_09552014.1| ribosomal protein S1 [Prevotella maculosa OT 289]
gi|371955908|gb|EHO73704.1| ribosomal protein S1 [Prevotella maculosa OT 289]
Length = 593
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 14/118 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I+V ++ +EE K++ K W+ S+ + V D G+ DYGAF+ ++ P
Sbjct: 262 INVVILDFDEEKKRIALGLKQLTPHPWDALSADLKVGDHVKGKVVVIADYGAFVEIQ-PG 320
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVSE+SW ++ ++ LN GDEV ++ +DR++ +++L IKQL+EDP
Sbjct: 321 ----VEGLIHVSEMSWSQHLRSAQEFLNVGDEVEAVILTLDRDERKMSLGIKQLKEDP 374
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYG 68
G + KV++ N+E + +V S K +A + S + + G YG
Sbjct: 168 FVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQKKEIISHLEKGQVLEGTVKNITSYG 227
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+ L DGL +H++++SW + D +++ ++ V ++ D EK RI L +K
Sbjct: 228 VFVDLGGVDGL------IHITDLSWGRVSDPHEVVALDQKINVVILDFDEEKKRIALGLK 281
Query: 129 QLEEDP 134
QL P
Sbjct: 282 QLTPHP 287
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ L +G+ GL+H+S++SW ++ + G E+ V V+ ID+E R++
Sbjct: 397 NFGIFVELE--EGV---DGLIHISDLSWTKKVKHPSEFTTVGAEIDVVVLDIDKENRRLS 451
Query: 125 LSIKQLEEDP 134
L KQLE++P
Sbjct: 452 LGHKQLEDNP 461
>gi|406882756|gb|EKD30481.1| RNA binding S1 protein [uncultured bacterium (gcode 4)]
Length = 397
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 3 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVE 59
P P+K + + + L G V+VI +++ KK++FSEK A+ ++ +
Sbjct: 145 PRVEGANPEKILEHLGR-LVGKPFKVRVINVDQDGKKIIFSEKAALEEARGESLKKLKIG 203
Query: 60 DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114
D G YG FI L GLVHVSE+ W + D GD+VRV+VI
Sbjct: 204 DTVDGSVSGILTYGLFITFN------GLEGLVHVSEIDWGHVSDPSKFAKVGDKVRVQVI 257
Query: 115 KIDREKSRITLSIKQLEEDP 134
ID +K I+LS+K+L+ +P
Sbjct: 258 GIDADK--ISLSMKRLKANP 275
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Query: 37 MKKLVFSEKDAVWNKYSSRVNVEDIF---VGR--DYGAFIHLRFPDGLYHLTGLVHVSEV 91
MK+L K W + + + DI V R +G F+ L DG ++GL+H+SE+
Sbjct: 268 MKRL----KANPWQVLAEKYKINDIIEAPVMRISQFGIFLAL---DG--GISGLIHLSEI 318
Query: 92 SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
S +++D+ + G+ V+ K+I D RI LS+K LEE P++
Sbjct: 319 SHTMVKDVAEYAKVGENVKAKIITFDPIAKRIGLSMKALEEAPVV 363
>gi|294650534|ref|ZP_06727891.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
gi|425745507|ref|ZP_18863551.1| ribosomal protein S1 [Acinetobacter baumannii WC-323]
gi|292823531|gb|EFF82377.1| 30S ribosomal protein S1 [Acinetobacter haemolyticus ATCC 19194]
gi|425488515|gb|EKU54850.1| ribosomal protein S1 [Acinetobacter baumannii WC-323]
Length = 560
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|262372480|ref|ZP_06065759.1| ribosomal protein S1 [Acinetobacter junii SH205]
gi|262312505|gb|EEY93590.1| ribosomal protein S1 [Acinetobacter junii SH205]
Length = 560
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSHEKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGLS-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|226952952|ref|ZP_03823416.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
gi|226836273|gb|EEH68656.1| 30S ribosomal protein S1 [Acinetobacter sp. ATCC 27244]
Length = 560
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKAHEKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|341821259|emb|CCC57612.1| ribosomal protein S1 [Weissella thailandensis fsh4-2]
Length = 405
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I K+I+ N +L+ S E+ A + ++V D+ G+ ++GAF
Sbjct: 157 GQTIRAKIIEINAADSRLILSRREVLNEERSAALARIFDELSVGDVIEGKVARMTNFGAF 216
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL VHVSE+S + + D+L+ G+EV+VKV+ +D E+ RI+LSIK
Sbjct: 217 IDLGGVDGL------VHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P EK P G+V+ + +E PG+
Sbjct: 271 QPGPWDTAAEKA-PA-GTVLEGTVKRVVDFGAFVEVFPGV 308
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 13/123 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K W+ + + + G D+GAF+ +
Sbjct: 246 GEEVKVKVLGLDPERERISLSIKATQPGPWDTAAEKAPAGTVLEGTVKRVVDFGAFVEV- 304
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVHVS++S I + D+L GD+V+VKV+ ++ E+ R++LSIK LEE P
Sbjct: 305 FP----GVEGLVHVSQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSIKALEEAP 360
Query: 135 LLE 137
E
Sbjct: 361 ARE 363
>gi|293608243|ref|ZP_06690546.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375134580|ref|YP_004995230.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus PHEA-2]
gi|427426096|ref|ZP_18916162.1| ribosomal protein S1 [Acinetobacter baumannii WC-136]
gi|292828816|gb|EFF87178.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122025|gb|ADY81548.1| 30S ribosomal protein S1 [Acinetobacter calcoaceticus PHEA-2]
gi|425697046|gb|EKU66736.1| ribosomal protein S1 [Acinetobacter baumannii WC-136]
Length = 557
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP L + +
Sbjct: 258 GLKQLGEDPWLAIMSR 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L + GLVH+S++SW+ + IR +GD V ++ +D E +RI
Sbjct: 376 DFGIFIGLN-----GGIDGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEGNRI 429
Query: 124 TLSIKQLEEDPL 135
+L IKQL DP
Sbjct: 430 SLGIKQLNSDPF 441
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E ++ K + W SR I R DYG F +
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEI- 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+G+ GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 297 -AEGV---EGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|425063489|ref|ZP_18466614.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
X73]
gi|404383052|gb|EJZ79509.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
X73]
Length = 549
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 18/150 (12%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G ++ V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW++ + +R +GDEV V+++D K
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNVSGEEAVRQ-YKKGDEVAAVVLQVDAVKE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
RI+L IKQLEEDP + + + G+V+S
Sbjct: 428 RISLGIKQLEEDPFNNFV--AVNKKGAVLS 455
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKPNPWLQFAE 359
>gi|421490897|ref|ZP_15938264.1| S1 RNA binding domain protein [Streptococcus anginosus SK1138]
gi|400371894|gb|EJP24843.1| S1 RNA binding domain protein [Streptococcus anginosus SK1138]
Length = 399
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L G EV VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLKVGQEVTVKVLDVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEDDQK 361
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V DI G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 GKLAVGDIVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|298708733|emb|CBJ30695.1| Plastid ribosomal protein S1 [Ectocarpus siliculosus]
Length = 441
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 11/117 (9%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPD 77
G ++ K ++ N E KLV S + AV + ++ D+ G + YGAF+ +R
Sbjct: 252 GKVMKYKFLEVNAENSKLVVSNRRAVLEQEMKELSRGDVVEGHVKAIKPYGAFVEIR--- 308
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+S++S+D I+D+ I+ G +++ +I D+ RI LS K LE +P
Sbjct: 309 ---GMSGLLHISQISFDRIEDLPSIMQMGMKLKCMIIDHDKVNGRIALSTKTLEPEP 362
>gi|410663090|ref|YP_006915461.1| 30S ribosomal protein S1 [Simiduia agarivorans SA1 = DSM 21679]
gi|409025447|gb|AFU97731.1| 30S ribosomal protein S1 [Simiduia agarivorans SA1 = DSM 21679]
Length = 560
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ N+Y V+ + DYG F L
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWAAITNRYPEGAKVKAVVTNLTDYGCFAELE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V V+ ID E+ RI+L IKQ +E
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGIKQCQE 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W+ + + D G+
Sbjct: 313 NKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGIKQCQENPWDAFGRQYAKNDKISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ ++ ID E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNENGEEAVRK-YKKGDELETVILAIDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQL++DP
Sbjct: 427 ERISLGIKQLDQDPF 441
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ SE+S D ++D R++L EG+ V K+I +DR+ I LSIK + D
Sbjct: 478 LKASEISRDKVEDARNVLKEGESVEAKIINVDRKNRVINLSIKSKDVD 525
>gi|90021782|ref|YP_527609.1| 30S ribosomal protein S1 [Saccharophagus degradans 2-40]
gi|89951382|gb|ABD81397.1| SSU ribosomal protein S1P [Saccharophagus degradans 2-40]
Length = 560
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVAVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +EE +++ K W+ +S++ D G+
Sbjct: 313 NKNIHPSKVVSLGDEVEVMILDIDEERRRISLGIKQCQENPWDAFSNQFAKGDKISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW+ + +R +GDE+ V+ ID E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEAGEEAVRK-FKKGDEIETVVLAIDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQL+EDP
Sbjct: 427 ERISLGVKQLDEDPF 441
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKV++ + E ++ K A+ +Y V+ DYG F +
Sbjct: 238 GDEIDVKVLKFDRERNRVSLGLKQLGEDPWSAITQRYPEGAKVKARITNLTDYGCFAEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I +++ GDEV V ++ ID E+ RI+L IKQ +E
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVSLGDEVEVMILDIDEERRRISLGIKQCQE 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+TG + SE+S D ++D R++L EGDEV K+ +DR+ I LS+K
Sbjct: 474 ITGTLKASEISRDKVEDARNVLKEGDEVEAKITNVDRKNRAIILSVK 520
>gi|406669503|ref|ZP_11076773.1| ribosomal protein S1 [Facklamia ignava CCUG 37419]
gi|405583199|gb|EKB57167.1| ribosomal protein S1 [Facklamia ignava CCUG 37419]
Length = 438
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRV---NVEDIFVGR--DYGAFIHLR 74
G +++VK++ NEE ++ S KD + W+ + +V D V R +GAF+ +
Sbjct: 256 GEVVNVKILSINEEEGRVSLSIKDTLEGPWDNIEEKAPEGSVLDGIVKRLTSFGAFVEV- 314
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S+++ + I + L EG+E++VKV+ ++ E+ R++LSIK LEE P
Sbjct: 315 FPG----VEGLVHISQIAHEHIATPAEKLTEGEEIKVKVLSVNPEEHRLSLSIKALEEKP 370
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAF 70
G + K+++ +L+ S K+ + +++ + DI G ++GAF
Sbjct: 167 GKTLKYKIVEIEPSENRLILSHKEIAQEEAAAKRAERLAELKEGDIIEGTVARLVNFGAF 226
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DG+ GLVH+S ++ + + D L G+ V VK++ I+ E+ R++LSIK
Sbjct: 227 IDL---DGV---DGLVHISRIAHEHVNKPSDHLTPGEVVNVKILSINEEEGRVSLSIKDT 280
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
E P + +E+ P+ GSV+ +S +E PG+
Sbjct: 281 LEGP-WDNIEEKAPE-GSVLDGIVKRLTSFGAFVEVFPGV 318
>gi|421252607|ref|ZP_15708178.1| 30S ribosomal protein S1, partial [Pasteurella multocida subsp.
multocida str. Anand1_buffalo]
gi|401695790|gb|EJS88869.1| 30S ribosomal protein S1, partial [Pasteurella multocida subsp.
multocida str. Anand1_buffalo]
Length = 445
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 100 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 153
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 154 GLKQLGQDPWVAIAE 168
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 18/151 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D G+
Sbjct: 209 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIK 268
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW++ + +R +GDEV V+++D K
Sbjct: 269 SITDFGIFIGL---DG--GIDGLVHLSDISWNVSGEEAVRQ-YKKGDEVAAVVLQVDAVK 322
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
RI+L IKQLEEDP + + + G+V+S
Sbjct: 323 ERISLGIKQLEEDPFNNFV--AVNKKGAVLS 351
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 185 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 238
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P L+ E
Sbjct: 239 SLGLKQCKPNPWLQFAE 255
>gi|15602666|ref|NP_245738.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|378774511|ref|YP_005176754.1| 30S ribosomal protein S1 [Pasteurella multocida 36950]
gi|383310481|ref|YP_005363291.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. HN06]
gi|386834049|ref|YP_006239364.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. 3480]
gi|421263540|ref|ZP_15714580.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|425065664|ref|ZP_18468784.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
P1059]
gi|12721105|gb|AAK02885.1| RpS1 [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597059|gb|AET15785.1| 30S ribosomal protein S1 [Pasteurella multocida 36950]
gi|380871753|gb|AFF24120.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. HN06]
gi|385200750|gb|AFI45605.1| ribosomal protein S1 [Pasteurella multocida subsp. multocida str.
3480]
gi|401689453|gb|EJS84888.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|404384040|gb|EJZ80485.1| SSU ribosomal protein S1p [Pasteurella multocida subsp. gallicida
P1059]
Length = 549
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 18/150 (12%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G ++ V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW++ + +R +GDEV V+++D K
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNVSGEEAVRQ-YKKGDEVAAVVLQVDAVKE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
RI+L IKQLEEDP + + + G+V+S
Sbjct: 428 RISLGIKQLEEDPFNNFV--AVNKKGAVLS 455
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKPNPWLQFAE 359
>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
Length = 403
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V ++K +S++ V D+ G+ ++G+F
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + ++ +N DIF G ++GAF+ +
Sbjct: 244 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATADLNEGDIFEGEVKSLTNFGAFVEV- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 -ADGI---QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSIK 352
>gi|270291294|ref|ZP_06197516.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
gi|270280140|gb|EFA25976.1| small subunit ribosomal protein S1 [Pediococcus acidilactici 7_4]
Length = 403
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DIFVGR-----DYGA 69
G + VK+I+ E +L+ S K AV N + E ++ G+ ++GA
Sbjct: 160 GQTLKVKIIEIKPEDNRLILSHK-AVINAERAEKRQEVLSSLQEGEVVTGKVARLTNFGA 218
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ L DGL VH+SE+S++ ++ D+L G+EV+VKV+ +D E+ RI+LSIKQ
Sbjct: 219 FVDLGGIDGL------VHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIKQ 272
Query: 130 LEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P EK G+V+ + +E PG+
Sbjct: 273 TQPGPWENIAEKA--PVGAVLDGKVKRLTDFGAFVEVFPGV 311
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K W + + V + G+ D+GAF+ +
Sbjct: 249 GEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEV- 307
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I D+L EG +++VKV+++ E+ R+ LSIK LEE P
Sbjct: 308 FP----GVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKALEEAP 363
>gi|407700220|ref|YP_006825007.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Black Sea
11']
gi|407249367|gb|AFT78552.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Black Sea
11']
Length = 556
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 22/142 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W ++ D G+
Sbjct: 313 NKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKID 117
D+G FI L DG + GLVH+S++SW D ++D + +GDE+ V+++D
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVD 423
Query: 118 REKSRITLSIKQLEEDPLLETL 139
E+ RI+L +KQ+EEDP + L
Sbjct: 424 PERERISLGVKQIEEDPFNKYL 445
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E +++ K + W + +SR G+ DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|417850726|ref|ZP_12496573.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
gi|338220431|gb|EGP05945.1| 30S ribosomal protein S1 [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
Length = 549
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 18/150 (12%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G ++ V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVEGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW++ + +R +GDEV V+++D K
Sbjct: 374 ITDFGIFIGL---DG--GIDGLVHLSDISWNVSGEEAVRQ-YKKGDEVAAVVLQVDAVKE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
RI+L IKQLEEDP + + + G+V+S
Sbjct: 428 RISLGIKQLEEDPFNNFV--AVNKKGAVLS 455
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKPNPWLQFAE 359
>gi|377809630|ref|YP_005004851.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
gi|361056371|gb|AEV95175.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
Length = 405
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 18/124 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAF 70
G + VK+I+ + +L+ S KD + + +++ ++ DI G+ ++GAF
Sbjct: 160 GKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREEVLNSIHEGDIVEGKVARLTNFGAF 219
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL VH+SE+S++ + D+L G++V+VKV+ +D E++RI+LSIKQ
Sbjct: 220 IDLGGMDGL------VHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQT 273
Query: 131 EEDP 134
P
Sbjct: 274 LAGP 277
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E ++ S K + W+ ++ V + G+ D+GAF+ +
Sbjct: 248 VGEDVKVKVLSVDPERNRISLSIKQTLAGPWDDIETKAPVGAVLDGKVKRLTDFGAFVEV 307
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I D+L G++V+VKV+ + E+ R+ LSIK LEE
Sbjct: 308 -FP----GVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSIKALEEA 362
Query: 134 P 134
P
Sbjct: 363 P 363
>gi|423332744|ref|ZP_17310526.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
gi|337727862|emb|CCC02950.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
Length = 416
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVE----DIFVGR-----DYG 68
G + K+++ +L+ S K+ A K + +V E D+ G+ ++G
Sbjct: 157 FKGQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVIEGKVARMTNFG 216
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL VHVSE+S+D + D+L G +V+VKV+ +D E+ RI+LSIK
Sbjct: 217 AFIDLGGVDGL------VHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIK 270
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
Q P + +E+ P D SV++ + +S +E PG+
Sbjct: 271 QTLPGP-WDDIEEKAPVD-SVLTGTVKRLTSFGAFVEVFPGV 310
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E +++ S K + W+ + V+ + G +GAF+ +
Sbjct: 247 AGQDVKVKVLSVDPERERISLSIKQTLPGPWDDIEEKAPVDSVLTGTVKRLTSFGAFVEV 306
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I D+L G EV+VKVI +D E R+ LS+K LEE
Sbjct: 307 -FPG----VEGLVHISQISHKHIATPADVLKPGQEVQVKVISVDPEHQRLGLSMKALEER 361
Query: 134 P 134
P
Sbjct: 362 P 362
>gi|256847157|ref|ZP_05552603.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
gi|256715821|gb|EEU30796.1| ribosomal protein S1 [Lactobacillus coleohominis 101-4-CHN]
Length = 409
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K + W+ + V+ + G +GAF+ +
Sbjct: 247 GQDVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVDTVLTGTVKRLTSFGAFVEV- 305
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I D+L G EV+VKVI +D E+ R+ LSIK LEE P
Sbjct: 306 FP----GVEGLVHISQISHKHIATPADVLKPGQEVKVKVINVDPERQRLGLSIKALEEKP 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 20/144 (13%)
Query: 30 VIQANEEMKKLVFSE---KDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLV 86
V + +EE K +FSE D V K + N +GAFI L DGL V
Sbjct: 183 VKKEHEEAAKKIFSELAAGDVVEGKVARMTN---------FGAFIDLGGVDGL------V 227
Query: 87 HVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQD 146
HVSE+S+D + D+L G +V+VKV+ +D E+ RI+LSIKQ P + EK
Sbjct: 228 HVSEISYDHVDKPSDVLEVGQDVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVD- 286
Query: 147 GSVISDSSSMSSSNSNTIEPLPGL 170
+V++ + +S +E PG+
Sbjct: 287 -TVLTGTVKRLTSFGAFVEVFPGV 309
>gi|406596972|ref|YP_006748102.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
gi|407683979|ref|YP_006799153.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407687884|ref|YP_006803057.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|406374293|gb|AFS37548.1| 30S ribosomal protein S1 [Alteromonas macleodii ATCC 27126]
gi|407245590|gb|AFT74776.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407291264|gb|AFT95576.1| 30S ribosomal protein S1 [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 556
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 22/142 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W ++ D G+
Sbjct: 313 NKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKID 117
D+G FI L DG + GLVH+S++SW D ++D + +GDE+ V+++D
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVD 423
Query: 118 REKSRITLSIKQLEEDPLLETL 139
E+ RI+L +KQ+EEDP + L
Sbjct: 424 PERERISLGVKQIEEDPFNKYL 445
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E +++ K + W + +SR G+ DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|444387252|ref|ZP_21185275.1| putative 30S ribosomal protein S1, partial [Streptococcus
pneumoniae PCS125219]
gi|444253347|gb|ELU59803.1| putative 30S ribosomal protein S1, partial [Streptococcus
pneumoniae PCS125219]
Length = 288
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 128 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 186
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 187 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 242
Query: 135 LLETLEK 141
E +K
Sbjct: 243 AQEEGQK 249
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 77 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 130
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P +K+ G V+ + + +E LP
Sbjct: 131 IEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKL--AKGDVVEGTVKRLTDFGAFVEVLP 188
Query: 169 GL 170
G+
Sbjct: 189 GI 190
>gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays]
gi|194703708|gb|ACF85938.1| unknown [Zea mays]
gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays]
gi|223948553|gb|ACN28360.1| unknown [Zea mays]
Length = 401
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 31 IQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGL 85
++ +EE +LV S + A+ + +++ + + +G + YGAFI + + GL
Sbjct: 229 VEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI------GGINGL 281
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 282 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
>gi|428217034|ref|YP_007101499.1| 30S ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
gi|427988816|gb|AFY69071.1| SSU ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
Length = 391
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ NK V + G + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNKLEVGEVVIGVVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I ++ N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHDHIDTPHNVFNVNDEVKVMIIDLDAERGRISLSTKQLEAEP 271
>gi|336233298|ref|YP_004590044.1| 30S ribosomal protein S1 [Buchnera aphidicola (Cinara tujafilina)]
gi|335345239|gb|AEH39785.1| 30S ribosomal protein S1 [Buchnera aphidicola (Cinara tujafilina)]
Length = 536
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W ++ +I+ GD++RVK++K D+EK+R++L
Sbjct: 204 DYGAFIDLGGVDGLLHIT------DMAWKRVKHPNEIVKIGDDIRVKILKFDQEKTRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL DP + LEK P+
Sbjct: 258 GLKQLGIDPWI-NLEKRYPE 276
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH +G I V ++ +EE +++ K WNK+S + I G+
Sbjct: 313 NKNIHPSKVVKSGESIQVSILNIDEERRRISLGIKQCTINPWNKFSKKNKRGCIVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L+ + GLVH+S++SW ++ +GD++ V+++D E+
Sbjct: 373 SITDFGIFIGLKGG-----IDGLVHLSDLSWYTSGEESVKKYKKGDDISAIVLQVDSERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL EDP
Sbjct: 428 RISLGIKQLTEDPF 441
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + + GLVHVSE+ W ++I ++ G+ ++V ++ ID E+ RI
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDWTN-KNIHPSKVVKSGESIQVSILNIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCTINP 353
>gi|323449583|gb|EGB05470.1| hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens]
Length = 381
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 72
++ + G I +K ++ N+E KLV S + AV + + D++ G + YGAF+
Sbjct: 200 SEAMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVE 259
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ ++GL+H+S++S+D ++D+ L G ++ VI D+ RI LS K LE
Sbjct: 260 I------MGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEP 313
Query: 133 DP 134
+P
Sbjct: 314 EP 315
>gi|322514508|ref|ZP_08067545.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976]
gi|322119578|gb|EFX91656.1| 30S ribosomal protein S1 [Actinobacillus ureae ATCC 25976]
Length = 568
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDEV VKV+K D++++R++L
Sbjct: 216 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEVVNVGDEVTVKVLKFDKDRTRVSL 269
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 270 GLKQLGQDP 278
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 16/116 (13%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V++ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 344 VLEVDEERRRISLGLKQCKANPWEHFAATHNKNDKVTGKIKSITDFGIFIGLE-----GG 398
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+S++SW++ + +R +GDEV V+++D K RI+L IKQLE DP
Sbjct: 399 IDGLVHLSDISWNVSGEEAVRS-YKKGDEVEAVVLQVDAVKERISLGIKQLESDPF 453
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 301 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSVGDVVEVMVLEVDEERRRI 354
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 355 SLGLKQCKANP 365
>gi|323449334|gb|EGB05223.1| hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens]
Length = 381
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIH 72
++ + G I +K ++ N+E KLV S + AV + + D++ G + YGAF+
Sbjct: 200 SEAMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVE 259
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ ++GL+H+S++S+D ++D+ L G ++ VI D+ RI LS K LE
Sbjct: 260 I------MGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEP 313
Query: 133 DP 134
+P
Sbjct: 314 EP 315
>gi|52425531|ref|YP_088668.1| 30S ribosomal protein S1 [Mannheimia succiniciproducens MBEL55E]
gi|52307583|gb|AAU38083.1| RpsA protein [Mannheimia succiniciproducens MBEL55E]
Length = 549
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 314 KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWLQFAETHNKGDKVEGKIKS 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+++D K
Sbjct: 374 ITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDEVAAVVLQVDSAKE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + + + G+V+S + + S +E G+
Sbjct: 428 RISLGIKQLEEDPFNNFV--AVNKKGAVVSATVVEADSKGAKVELNGGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKANPWLQFAE 359
>gi|407692266|ref|YP_006817055.1| 30S ribosomal protein S1 [Actinobacillus suis H91-0380]
gi|407388323|gb|AFU18816.1| 30S ribosomal protein S1 [Actinobacillus suis H91-0380]
Length = 555
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDEV VKV+K D++++R++L
Sbjct: 203 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEVVNVGDEVTVKVLKFDKDRTRVSL 256
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 257 GLKQLGQDP 265
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 16/116 (13%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V++ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 331 VLEVDEERRRISLGLKQCKANPWEHFAATHNKNDKVTGKIKSITDFGIFIGLE-----GG 385
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135
+ GLVH+S++SW++ + +R+ +GDEV V+++D K RI+L IKQLE DP
Sbjct: 386 IDGLVHLSDISWNVSGEEAVRN-YKKGDEVEAVVLQVDAVKERISLGIKQLESDPF 440
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V+++D E+ RI
Sbjct: 288 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSVGDVVEVMVLEVDEERRRI 341
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 342 SLGLKQCKANP 352
>gi|304385043|ref|ZP_07367389.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
gi|418069327|ref|ZP_12706605.1| 30S ribosomal protein S1 [Pediococcus acidilactici MA18/5M]
gi|304329237|gb|EFL96457.1| 30S ribosomal protein S1 [Pediococcus acidilactici DSM 20284]
gi|357536796|gb|EHJ20824.1| 30S ribosomal protein S1 [Pediococcus acidilactici MA18/5M]
Length = 403
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DIFVGR-----DYGA 69
G + VK+I+ E +L+ S K AV N + E ++ G+ ++GA
Sbjct: 160 GQTLKVKIIEIKPEDNRLILSHK-AVINAERAEKRQEVLSSLQEGEVVTGKVARLTNFGA 218
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ L DGL VH+SE+S++ ++ D+L G+EV+VKV+ +D E+ RI+LSIKQ
Sbjct: 219 FVDLGGIDGL------VHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIKQ 272
Query: 130 LEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P EK G+V+ + +E PG+
Sbjct: 273 TQPGPWENIAEKA--PVGAVLDGKVKRLTDFGAFVEVFPGV 311
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K W + + V + G+ D+GAF+ +
Sbjct: 249 GEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEV- 307
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I D+L EG +++VKV+++ E+ R+ LSIK LEE P
Sbjct: 308 FP----GVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKALEEAP 363
>gi|257125163|ref|YP_003163277.1| RNA binding S1 domain-containing protein [Leptotrichia buccalis
C-1013-b]
gi|257049102|gb|ACV38286.1| RNA binding S1 domain protein [Leptotrichia buccalis C-1013-b]
Length = 600
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 11/95 (11%)
Query: 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 105
KY VN+ DI G+ D+G + L +G +H+SEVSW+ + ++ + +
Sbjct: 163 KYFESVNIGDIVTGKVKEVFDFGIILDLGAA------SGFIHISEVSWEQVDNLTEKYKK 216
Query: 106 GDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
GDE+ K+I+ D EK+R+ LSIKQL EDP + E
Sbjct: 217 GDEISAKIIEKDAEKNRLKLSIKQLSEDPWINFAE 251
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGA 69
+K G +I K++ N+E ++ S K D W + ++ F G+ DYG
Sbjct: 383 SKYKAGDLIKFKIVDFNDEKNRITLSAKALLDDRWEVLEETYDFDNTFTGKVMNVQDYGI 442
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ L + +H +E SWD + + GDEV KVI +D+ +++ SIKQ
Sbjct: 443 FVELE-----KGIEVFIHRNEFSWDKREHKK--YKVGDEVEFKVIIVDKLDKKLSGSIKQ 495
Query: 130 LEEDPLLETLEKVIPQDGSVIS 151
LE+ P E E+ + G+VI+
Sbjct: 496 LEKSPWKEATEQC--KKGNVIN 515
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIF--VGRDYGAFIHLRFPD 77
G IS K+I+ + E +L S K + W ++ NV D+ V +D F + D
Sbjct: 217 GDEISAKIIEKDAEKNRLKLSIKQLSEDPWINFAENHNVGDVVEAVVKDVLDFGIVATVD 276
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
G +G VH+SE++W + +++++ EGD+ K+I+I+ EK + LS+KQL E+P
Sbjct: 277 GN---SGFVHISELAWHNGAKELKN-YKEGDKFSAKIIQIENEKKNVKLSVKQLSENPWN 332
Query: 137 ETLEK 141
EK
Sbjct: 333 TVKEK 337
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G S K+IQ E K + S K + WN + ++ DI D+G I L
Sbjct: 302 GDKFSAKIIQIENEKKNVKLSVKQLSENPWNTVKEKYHIGDIIEKPITEVFDFGLLISLE 361
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S+ ++ GD ++ K++ + EK+RITLS K L +D
Sbjct: 362 -----KDIDGLLHVSDLSYKRESNLTSKYKAGDLIKFKIVDFNDEKNRITLSAKALLDDR 416
Query: 135 LLETLEKVIPQDGS 148
E LE+ D +
Sbjct: 417 -WEVLEETYDFDNT 429
>gi|410861852|ref|YP_006977086.1| 30S ribosomal protein S1 [Alteromonas macleodii AltDE1]
gi|410819114|gb|AFV85731.1| 30S ribosomal protein S1 [Alteromonas macleodii AltDE1]
Length = 556
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 22/142 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W ++ D G+
Sbjct: 313 NKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKID 117
D+G FI L DG + GLVH+S++SW D ++D + +GDE+ V+++D
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVD 423
Query: 118 REKSRITLSIKQLEEDPLLETL 139
E+ RI+L +KQ+EEDP + L
Sbjct: 424 PERERISLGVKQIEEDPFNKYL 445
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E +++ K + W + +SR G+ DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|416892448|ref|ZP_11923786.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus ATCC 33389]
gi|347814727|gb|EGY31375.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus ATCC 33389]
Length = 548
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|337285521|ref|YP_004624994.1| 30S ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
gi|335358349|gb|AEH44030.1| ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
Length = 567
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 27/164 (16%)
Query: 4 SHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN--VEDI 61
S + +P K+ EI G+ + V+V+ + + +V S ++ + + R +E++
Sbjct: 143 SQAFLKPPKNPEEI----IGTTLKVEVVSVDRKKNNVVVSHRNYLEKESERRKKELLENL 198
Query: 62 FVGR----------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRV 111
G+ DYG F+ L DGL +HVS++SW ++ + GD+++V
Sbjct: 199 EEGQVLEGTVKSITDYGVFVDLGGVDGL------LHVSDISWGRVKHPSNYFKVGDKIKV 252
Query: 112 KVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ----DGSVIS 151
KVIK DREK +I L IKQL DP ET+ + P+ +G V+S
Sbjct: 253 KVIKYDREKEKIALGIKQLTPDP-WETVAEKYPEGKRIEGKVVS 295
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVG-RDYGAFIHLR 74
G I VKVI+ + E +K+ K + V KY +E V ++GAF+ L
Sbjct: 247 GDKIKVKVIKYDREKEKIALGIKQLTPDPWETVAEKYPEGKRIEGKVVSLTNFGAFVELE 306
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL+H+SE+SW I+ RDIL GD+V V V+ +D E R++LS+KQ+E +
Sbjct: 307 -----PGVEGLIHISELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQVEPN 361
Query: 134 P 134
P
Sbjct: 362 P 362
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+G F+ + + + G +HVS++SW I+ + GD ++ ++KIDREK ++ L
Sbjct: 385 DFGVFVEV-----MEGIDGFIHVSDLSWGRIKHPSEAYKPGDMIQAVILKIDREKEKLAL 439
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSS 155
+KQL DP EK GSV++ S
Sbjct: 440 GVKQLTPDPWESVPEKY--PVGSVVTGKVS 467
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G +I +++ + E +KL K W + V + G+ D+G F+ L
Sbjct: 420 GDMIQAVILKIDREKEKLALGVKQLTPDPWESVPEKYPVGSVVTGKVSNVTDFGVFVELE 479
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
+ GLVHVSE+S ++ + G EV+ KV+KI+ E RI LSI
Sbjct: 480 -----EGVEGLVHVSEISDKKVKTPVGMFEPGQEVKAKVVKIEPESRRIGLSI 527
>gi|251792146|ref|YP_003006866.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700]
gi|422337852|ref|ZP_16418821.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus F0387]
gi|247533533|gb|ACS96779.1| ribosomal protein S1 [Aggregatibacter aphrophilus NJ8700]
gi|353344858|gb|EHB89158.1| 30S ribosomal protein S1 [Aggregatibacter aphrophilus F0387]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|427439251|ref|ZP_18923993.1| 30S ribosomal protein S1 [Pediococcus lolii NGRI 0510Q]
gi|425788629|dbj|GAC44781.1| 30S ribosomal protein S1 [Pediococcus lolii NGRI 0510Q]
Length = 403
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVE--------DIFVGR-----DYGA 69
G + VK+I+ E +L+ S K AV N + E ++ G+ ++GA
Sbjct: 160 GQTLKVKIIEIKPEDNRLILSHK-AVINAERAEKRQEVLSSLQEGEVVTGKVARLTNFGA 218
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ L DGL VH+SE+S++ ++ D+L G+EV+VKV+ +D E+ RI+LSIKQ
Sbjct: 219 FVDLGGIDGL------VHISEISYERVEKPSDVLKPGEEVQVKVLSVDPERERISLSIKQ 272
Query: 130 LEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P EK G+V+ + +E PG+
Sbjct: 273 TQPGPWENIAEKA--PVGAVLDGKVKRLTDFGAFVEVFPGV 311
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K W + + V + G+ D+GAF+ +
Sbjct: 249 GEEVQVKVLSVDPERERISLSIKQTQPGPWENIAEKAPVGAVLDGKVKRLTDFGAFVEV- 307
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I D+L EG +++VKV+++ E+ R+ LSIK LEE P
Sbjct: 308 FP----GVEGLVHISQISHKHIATPADVLEEGQDIKVKVLEVHPEERRLALSIKALEEAP 363
>gi|416051449|ref|ZP_11577497.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|347992882|gb|EGY34259.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|444333299|ref|ZP_21149153.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
gi|443551903|gb|ELT59551.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAEAHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|387119995|ref|YP_006285878.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|415758940|ref|ZP_11481640.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416031374|ref|ZP_11572473.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|416049594|ref|ZP_11576670.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|429734711|ref|ZP_19268717.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans Y4]
gi|444348684|ref|ZP_21156285.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
gi|347991432|gb|EGY32905.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|348001792|gb|EGY42522.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|348655184|gb|EGY70660.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D17P-3]
gi|385874487|gb|AFI86046.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429151376|gb|EKX94245.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans Y4]
gi|443546436|gb|ELT56097.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|123965580|ref|YP_001010661.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9515]
gi|123199946|gb|ABM71554.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9515]
Length = 363
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 76/127 (59%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S +I + L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 200 SARKIKEDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVTDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP 134
K LE +P
Sbjct: 314 KALEPEP 320
>gi|395242108|ref|ZP_10419107.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
gi|394480469|emb|CCI85347.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
Length = 402
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD V + K +S++ V D+ G+ ++GAF
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGAF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI +++ ++ S K + + + +S ++ DIF G ++GAF+ +
Sbjct: 244 GQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATSGLHEGDIFEGEVKSLTNFGAFVEV- 302
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+S + D+L G V+VKV+ ID + RI+LSIK +E+
Sbjct: 303 -TDGI---QGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSIKATDEN 357
>gi|418466069|ref|ZP_13037001.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|359755567|gb|EHK89731.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|365968077|ref|YP_004949639.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|365746990|gb|AEW77895.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
ANH9381]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEED
Sbjct: 427 ERISLGIKQLEEDSF 441
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|333893157|ref|YP_004467032.1| 30S ribosomal protein S1 [Alteromonas sp. SN2]
gi|332993175|gb|AEF03230.1| 30S ribosomal protein S1 [Alteromonas sp. SN2]
Length = 556
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGNDPWQE 269
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 22/142 (15%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W ++ D G+
Sbjct: 313 NKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIDNPWETFAKSHEKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKID 117
D+G FI L DG + GLVH+S++SW D ++D + +GDE+ V+++D
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVD 423
Query: 118 REKSRITLSIKQLEEDPLLETL 139
E+ RI+L +KQ+EEDP + L
Sbjct: 424 PERERISLGVKQIEEDPFNKYL 445
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 17/129 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E +++ K + W + +SR G+ DYG F+ +
Sbjct: 238 GDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKISGQVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ +
Sbjct: 298 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCID 351
Query: 133 DPLLETLEK 141
+P ET K
Sbjct: 352 NP-WETFAK 359
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + V+++S D I+D + N GD + K + +DR+ + LS+K ++ E ++KV
Sbjct: 476 GYIRVADLSVDRIEDATEAANVGDSIEAKFMGVDRKNRTVNLSVKAKDQADEKEAIDKVN 535
Query: 144 PQD 146
Q+
Sbjct: 536 QQE 538
>gi|261868288|ref|YP_003256210.1| 30S ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|415770380|ref|ZP_11484797.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416103449|ref|ZP_11589442.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|444346981|ref|ZP_21154933.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|261413620|gb|ACX82991.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348008184|gb|EGY48463.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|348656828|gb|EGY74432.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443541087|gb|ELT51571.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|332141546|ref|YP_004427284.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551568|gb|AEA98286.1| 30S ribosomal subunit protein S1 [Alteromonas macleodii str. 'Deep
ecotype']
Length = 504
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D+EK R++L
Sbjct: 190 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKEKQRVSL 243
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 244 GMKQMGNDPWQE 255
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 24/167 (14%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K + W ++ D G+
Sbjct: 299 NKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIANPWETFAESHEKGDKVSGKIK 358
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-----DLIQDIRDILNEGDEVRVKVIKID 117
D+G FI L DG + GLVH+S++SW D ++D + +GDE+ V+++D
Sbjct: 359 SITDFGIFIGL---DG--GIDGLVHLSDISWNKSGEDAVRDYK----KGDEISAVVLQVD 409
Query: 118 REKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI 164
E+ RI+L +KQ+EEDP + L + G++++ + + + T+
Sbjct: 410 PERERISLGVKQIEEDPFNKYLTD--NKKGAIVTGTVTAVDAKGVTV 454
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ ++E +++ K + W + +SR G+ DYG F+ +
Sbjct: 224 GDEINVKVLKFDKEKQRVSLGMKQMGNDPWQEIASRYPEGTKINGQVTNLTDYGCFVEIE 283
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI+L +KQ
Sbjct: 284 --DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDTVDVMVLEIDEERRRISLGLKQCIA 337
Query: 133 DP 134
+P
Sbjct: 338 NP 339
>gi|416068775|ref|ZP_11582900.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|348000683|gb|EGY41457.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQLEEDP
Sbjct: 427 ERISLGVKQLEEDPF 441
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|262282821|ref|ZP_06060588.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
gi|262261073|gb|EEY79772.1| 30S ribosomal protein S1 [Streptococcus sp. 2_1_36FAA]
Length = 401
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNPANERVSLSIKALEERP 354
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|413955874|gb|AFW88523.1| 30S ribosomal protein S1 [Zea mays]
Length = 401
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 31 IQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGL 85
++ +EE +LV S + A+ + +++ + + +G + YGAFI + + GL
Sbjct: 229 VEVDEEQGRLVLSNRKAMADS-QAQLGIGSVVLGTVESLKPYGAFIDI------GGINGL 281
Query: 86 VHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 282 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 330
>gi|393757478|ref|ZP_10346302.1| 30S ribosomal protein S1 [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393165170|gb|EJC65219.1| 30S ribosomal protein S1 [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 572
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G E+ KV+K D+EKSR++L
Sbjct: 214 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEIEAKVLKFDQEKSRVSL 267
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ+ + ++++
Sbjct: 268 GVKQLGEDPWI-GLARRYPQNTRLFGKVTNLT 298
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++ D G D+G F+ L
Sbjct: 335 GEEVEVMVLEIDEDRRRISLGMKQCRANPWEDFAINFKRGDKVRGGIKSITDFGVFVGL- 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDEV V+ ID +K RI+L IKQLE
Sbjct: 394 -PGGI---DGLVHLSDLSWSETGEEAVRN-FKKGDEVDAVVLGIDTDKERISLGIKQLEG 448
Query: 133 DPL 135
DP
Sbjct: 449 DPF 451
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + DG+ GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 299 DYGAFVEVE--DGI---EGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 353
Query: 125 LSIKQLEEDP 134
L +KQ +P
Sbjct: 354 LGMKQCRANP 363
>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
gi|338204370|ref|YP_004650515.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
gi|336449610|gb|AEI58225.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
Length = 416
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVE----DIFVGR-----DYG 68
G + K+++ +L+ S K+ A K + +V E D+ G+ ++G
Sbjct: 157 FKGQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVVEGKVARMTNFG 216
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL VHVSE+S+D + D+L G +V+VKV+ +D E+ RI+LSIK
Sbjct: 217 AFIDLGGVDGL------VHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIK 270
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
Q P + +E+ P D SV++ + +S +E PG+
Sbjct: 271 QTLPGP-WDDIEEKAPVD-SVLTGTVKRLTSFGAFVEVFPGV 310
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + E +++ S K + W+ + V+ + G +GAF+ +
Sbjct: 247 AGQDVKVKVLSVDPERERISLSIKQTLPGPWDDIEEKAPVDSVLTGTVKRLTSFGAFVEV 306
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I D+L G EV+VKVI +D E R+ LS+K LEE
Sbjct: 307 -FPG----VEGLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMKALEER 361
Query: 134 P 134
P
Sbjct: 362 P 362
>gi|434400436|ref|YP_007134440.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428271533|gb|AFZ37474.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 332
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + G + Y
Sbjct: 152 SAKEAKEDLVGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVRGSVRGIKPY 211
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 212 GAFIDI------GGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLST 265
Query: 128 KQLE 131
KQLE
Sbjct: 266 KQLE 269
>gi|416077177|ref|ZP_11585763.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|444337507|ref|ZP_21151462.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|348004110|gb|EGY44637.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|443546800|gb|ELT56402.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
Length = 548
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|320546631|ref|ZP_08040943.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
gi|320448686|gb|EFW89417.1| 30S ribosomal protein S1 [Streptococcus equinus ATCC 9812]
Length = 398
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ +EE ++ S K W+ ++ D+ G+ D+GAF+ +
Sbjct: 240 GEEIEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVVEGKVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S + + +D+L+ G EV+VKV+ ++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVGNPKDVLSVGQEVKVKVLDVNADAERVSLSIKALEERP 354
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF+ L DGL VHV+E+S + + +++ G+E+ VKV+ ID E R++LS
Sbjct: 207 FGAFVDLGGVDGL------VHVTELSHERNVSPKSVVSVGEEIEVKVLSIDEEAGRVSLS 260
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+K P +K+ G V+ + +E LPG+
Sbjct: 261 LKATTPGPWDGVEQKLAA--GDVVEGKVKRLTDFGAFVEVLPGI 302
>gi|381394198|ref|ZP_09919916.1| small subunit ribosomal protein S1 [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330470|dbj|GAB55049.1| small subunit ribosomal protein S1 [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 557
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++KSR++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKVLKFDKDKSRVSL 257
Query: 126 SIKQLEEDPLLE 137
+KQ+ DP E
Sbjct: 258 GMKQMGSDPWQE 269
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 97/184 (52%), Gaps = 20/184 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G +++V V++ +EE +++ K + W ++ D G+
Sbjct: 313 NKNIHPSKVVNLGDVVNVMVLEIDEERRRISLGLKQCIDNPWETFAKSHEKGDKVSGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L DG + GLVH+S++SW + +R+ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWQKQGEEAVRE-YKKGDEISAVVLQVDPER 426
Query: 121 SRITLSIKQLEEDPL---LETLEKVIPQDGSVI-SDSSSMSSSNSNTIEPLPGLGAIFEE 176
RI+L +KQ++EDP L ++K +G VI +D+ ++ + + ++ +G + E
Sbjct: 427 ERISLGVKQIDEDPFNKYLTDIKKGAIVNGIVIEADAKGVTVNLAEEVDGFIRIGDLARE 486
Query: 177 LLQE 180
+++
Sbjct: 487 RVED 490
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 9/78 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + DG+ GLVHVSE+ W ++I ++N GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEIE--DGV---EGLVHVSEMDW-TNKNIHPSKVVNLGDVVNVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLEK 141
+L +KQ ++P ET K
Sbjct: 343 SLGLKQCIDNP-WETFAK 359
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 8 KEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVN----VED 60
K+ ++++ E KG IS V+Q + E +++ K + +NKY + + V
Sbjct: 400 KQGEEAVREYKKG---DEISAVVLQVDPERERISLGVKQIDEDPFNKYLTDIKKGAIVNG 456
Query: 61 IFVGRDY-GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDRE 119
I + D G ++L + G + + +++ + ++D +I+ GD + K +DR+
Sbjct: 457 IVIEADAKGVTVNL-----AEEVDGFIRIGDLARERVEDASEIVKVGDTIEAKYTGVDRK 511
Query: 120 KSRITLSIKQLEEDPLLETLEKV--IPQDGSVIS 151
ITLS+K ++ + L+KV P+D S
Sbjct: 512 NRVITLSVKAKDQADEKDALDKVNNQPEDAGFAS 545
>gi|124515665|gb|EAY57174.1| ribosomal protein S1 [Leptospirillum rubarum]
Length = 475
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR----------DYG 68
L G I V++I+ N++ ++ S + + W +V ++ + G DYG
Sbjct: 55 LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEILEGIVKNITDYG 114
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H++++SW + + ++ +N GD+V V V+K D+E R++L +K
Sbjct: 115 AFIDLGGIDGL------LHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKETGRVSLGLK 168
Query: 129 QLEEDP 134
QL DP
Sbjct: 169 QLTPDP 174
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 20/143 (13%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVN 57
MS +H K P K + G I V+V++ +E+ +K+ K W+ +
Sbjct: 217 MSWNHEVKHPSKIMS------VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVEGKYP 270
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRV 111
V + G+ D+GAF+ L + GL+H+S++SW ++ ++ +G +V V
Sbjct: 271 VGAVVSGKIKSLTDFGAFVGLD-----EGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEV 325
Query: 112 KVIKIDREKSRITLSIKQLEEDP 134
V+KI++E+ R++L KQ+ EDP
Sbjct: 326 VVLKIEKERQRLSLGFKQVSEDP 348
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEE-------MKKLVFSEKDAVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G ++V V++ ++E +K+L V +Y +RVN + + DYGAF+ +
Sbjct: 146 GDKVNVVVLKHDKETGRVSLGLKQLTPDPWTTVGTRYPEGTRVNARVVSI-TDYGAFLEI 204
Query: 74 RFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GL+HV+E+SW+ ++ I++ GD + V+V+KID + +I+L +KQL
Sbjct: 205 E-----PGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEVQVLKIDEKNRKISLGLKQLGP 259
Query: 133 DP 134
+P
Sbjct: 260 NP 261
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+G F+ L + GLVHVSEV + Q + + G + V+VIK+D + +I L
Sbjct: 372 DFGFFVEL-----AEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAERKIGL 426
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
S+K + D LE V Q
Sbjct: 427 SMKAVSADSPLEAAPAVNAQ 446
>gi|339478155|ref|YP_004706974.1| putative 30S ribosomal protein S1 [Candidatus Tremblaya princeps
PCIT]
gi|409191067|ref|YP_006884196.1| 30S ribosomal protein S1 [Candidatus Tremblaya princeps PCVAL]
gi|338172177|gb|AEI75106.1| putative 30S ribosomal protein S1 [Candidatus Tremblaya princeps
PCIT]
gi|340536395|gb|AEK38393.1| 30S ribosomal protein S1 [Candidatus Tremblaya princeps PCVAL]
Length = 518
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L L GL+H++++SW I+ +L+ GD + VKV+K DR+K+R++L
Sbjct: 204 DYGAFIDL------GGLDGLLHITDISWRRIRHPSQVLSVGDRITVKVLKFDRQKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 258 GLKQLHPDP 266
>gi|424779571|ref|ZP_18206490.1| 30S ribosomal protein S1 [Alcaligenes sp. HPC1271]
gi|422885669|gb|EKU28111.1| 30S ribosomal protein S1 [Alcaligenes sp. HPC1271]
Length = 531
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G E+ KV+K D+EKSR++L
Sbjct: 214 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEIEAKVLKFDQEKSRVSL 267
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ+ + ++++
Sbjct: 268 GVKQLGEDPWI-GLARRYPQNTRLFGKVTNLT 298
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++ D G D+G F+ L
Sbjct: 335 GEEVEVMVLEIDEDRRRISLGMKQCRANPWEDFAINFKRGDKVRGGIKSITDFGVFVGL- 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDEV V+ ID +K RI+L IKQLE
Sbjct: 394 -PGGI---DGLVHLSDLSWSETGEEAVRN-FKKGDEVDAVVLGIDTDKERISLGIKQLEG 448
Query: 133 DPL 135
DP
Sbjct: 449 DPF 451
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + DG+ GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 299 DYGAFVEVE--DGI---EGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 353
Query: 125 LSIKQLEEDP 134
L +KQ +P
Sbjct: 354 LGMKQCRANP 363
>gi|344925011|ref|ZP_08778472.1| 30S ribosomal protein S1 [Candidatus Odyssella thessalonicensis
L13]
Length = 575
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL +HV+++SW I D+L G+ ++V+VI+ +R+ RI+L
Sbjct: 214 DYGAFIDLGGVDGL------LHVTDISWRRINHPGDVLKVGETIQVQVIRFNRDTQRISL 267
Query: 126 SIKQLEEDPLLETLEKVIP 144
+KQLE DP E+ IP
Sbjct: 268 GMKQLEADPWKGVEERYIP 286
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 22/159 (13%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVN 57
MS + P K +H+ G + V+V++ + +++ K W +++ +
Sbjct: 319 MSWTKKNIHPSKLLHQ------GQEVEVQVLEVDMTKRRISLGLKQCSENPWIRFAEQYP 372
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 112
V + G ++G F+ + + G+VH+++VSWD D +GD ++VK
Sbjct: 373 VGSVLEGEIKNITEFGMFVGVD-----DEIDGMVHMTDVSWDNGDDSSQ-FKKGDVIKVK 426
Query: 113 VIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
V+ +D EK RI+L IKQL DP LE V + GSV++
Sbjct: 427 VLDVDPEKERISLGIKQLNSDPFATALESV--KKGSVVT 463
>gi|406707627|ref|YP_006757979.1| RNA-binding protein [alpha proteobacterium HIMB59]
gi|406653403|gb|AFS48802.1| RNA-binding protein with S1 RNA-binding domain protein [alpha
proteobacterium HIMB59]
Length = 565
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G K+++ ++E K+ K D W K ++ + +I+ G+ DYGAF+ L
Sbjct: 241 GKKYDFKILKVSDESDKISLGYKQLKDDPWEKIEDKITMNEIYDGKITHITDYGAFVQLT 300
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
D L GLVH +++SW ++I IL G +RVKV++ID+EK RI+L IKQ E
Sbjct: 301 DKD----LEGLVHSNDISW-TKKNIHPNKILEVGFNIRVKVLEIDKEKKRISLGIKQTEP 355
Query: 133 DP 134
+P
Sbjct: 356 NP 357
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL VH+S++SW I D+L G + K++K+ E +I+L
Sbjct: 207 DYGAFVDLGGIDGL------VHLSDISWSRISHPSDVLEVGKKYDFKILKVSDESDKISL 260
Query: 126 SIKQLEEDP 134
KQL++DP
Sbjct: 261 GYKQLKDDP 269
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 19/165 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN------VEDIFVG 64
+K+IH G I VKV++ ++E K++ K N + + +N V D +
Sbjct: 317 KKNIHPNKILEVGFNIRVKVLEIDKEKKRISLGIKQTEPNPWENILNEYKKDQVIDTEIK 376
Query: 65 R--DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI--LNEGDEVRVKVIKIDREK 120
++G F L ++ GL+H +++SW R + +G ++VK+++ID EK
Sbjct: 377 NITEFGIFAKLN-----DNIDGLIHKNDLSWTDSNGDRTLKKYQKGQNIQVKILEIDPEK 431
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
+I+ IKQL DP E + G ++ S++++ N+N I+
Sbjct: 432 EKISFGIKQLTPDPFHEFFKD--KNKGDIV--SATITKINNNGID 472
>gi|340346243|ref|ZP_08669369.1| 30S ribosomal protein S1 [Prevotella dentalis DSM 3688]
gi|433651436|ref|YP_007277815.1| ribosomal protein S1 [Prevotella dentalis DSM 3688]
gi|339612191|gb|EGQ17005.1| 30S ribosomal protein S1 [Prevotella dentalis DSM 3688]
gi|433301969|gb|AGB27785.1| ribosomal protein S1 [Prevotella dentalis DSM 3688]
Length = 592
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I V ++ +EE K++ K W+ + + V D G+ DYGAF+ ++ P
Sbjct: 262 IQVVILDFDEEKKRIALGLKQLTPHPWDALDANLKVGDHIKGKVVVIADYGAFVEIQ-PG 320
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ ++ L+ GDE+ ++ +DR++ +++L IKQL+EDP
Sbjct: 321 ----VEGLIHVSEMSWSQHLRSAQEFLHVGDEIEAVILTLDRQERKMSLGIKQLKEDP-W 375
Query: 137 ETLEKVIP 144
ET+E+ P
Sbjct: 376 ETIEQKYP 383
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYG 68
G + KV++ N+E + +V S K +A + S + + G YG
Sbjct: 168 FVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQKKEIISHLEKGQVLEGTVKNITSYG 227
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+ L DGL VH++++SW + D +++ +++V ++ D EK RI L +K
Sbjct: 228 VFVDLGGVDGL------VHITDLSWGRVSDPHEVVALDQKIQVVILDFDEEKKRIALGLK 281
Query: 129 QLEEDP 134
QL P
Sbjct: 282 QLTPHP 287
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ L +G+ GL+H+S++SW ++ + G + V V++ID+E R++
Sbjct: 397 NFGIFVELE--EGV---DGLIHISDLSWTKKVKHPSEFTTVGAAIDVVVLEIDKENRRLS 451
Query: 125 LSIKQLEEDP 134
L KQLE++P
Sbjct: 452 LGHKQLEDNP 461
>gi|416085333|ref|ZP_11587151.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|348010234|gb|EGY50302.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
Length = 485
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 141 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 194
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 195 GLKQLGQDP 203
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 250 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAETHNKGDKVVGKIK 309
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 310 SITDFGIFIGLEGG-----IDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 363
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 364 ERISLGIKQLEEDPF 378
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 226 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 279
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 280 SLGLKQCKPNPWTQFAE 296
>gi|34558836|gb|AAQ75180.1| 30S ribosomal protein S1 [Alvinella pompejana epibiont 7G3]
Length = 556
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNK---YSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+VI+ ++ +KL S K + ++S+ V DI G+ D+GAF+ +
Sbjct: 333 GDKLDVEVIEIDKSKRKLRVSRKTLLPKPIEIFASKYRVGDIVKGKISSITDFGAFVKID 392
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+H EVSWD ++ L +GDEV K+IKID E +I+LS K LEE P
Sbjct: 393 ------DIEGLIHNQEVSWDKSATAKNSLKKGDEVEAKIIKIDIENGKISLSKKALEESP 446
Query: 135 L 135
+
Sbjct: 447 I 447
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITL 125
YGAF+ L L +HVSE+SWD ++ +D LN GD++ V+VI+ID+ K ++ +
Sbjct: 298 YGAFVDLG-----NDLEAFLHVSEISWDKNVKHPKDYLNIGDKLDVEVIEIDKSKRKLRV 352
Query: 126 SIKQLEEDPL 135
S K L P+
Sbjct: 353 SRKTLLPKPI 362
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YG F+ + DGL H + + H V+ EGDEV V I D++K ++LS
Sbjct: 213 YGMFVDVGGLDGLVHYSKISHKGPVNP------AKHFKEGDEVNVVAIDFDKKKKHLSLS 266
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179
IK DP E ++K + + DS S+ SN LG E L
Sbjct: 267 IKDATPDP-WEDIDKSLRR-----GDSVSVEVSNIEPYGAFVDLGNDLEAFLH 313
>gi|416058177|ref|ZP_11580448.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
gi|347999995|gb|EGY40801.1| ribosomal protein S1 [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
Length = 453
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K W +++ N D VG+
Sbjct: 313 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKPNPWTQFAEAHNKGDKVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN--EGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW+ +Q + N +GDEV V+++D K
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWN-VQGEEAVRNYKKGDEVAAVVLQVDAVK 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKPNPWTQFAE 359
>gi|169827482|ref|YP_001697640.1| 30S ribosomal protein S1 [Lysinibacillus sphaericus C3-41]
gi|168991970|gb|ACA39510.1| 30S ribosomal protein S1-like protein [Lysinibacillus sphaericus
C3-41]
Length = 378
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 20/164 (12%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----D 66
+G G +S K+++ ++E +L+ S + V ++ +S+ + D+ G+
Sbjct: 140 EGYKGKSLSFKIVELDKEKNRLILSHRAVVESEKASQKKDVINQIKAGDVLDGKVQRLAS 199
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI L DGL VH+S+VS + + D+ ++L+EG V VKV+ +D E RI+LS
Sbjct: 200 FGAFIDLGGIDGL------VHISQVSHEHVSDVSEVLSEGQGVTVKVLSVDPENERISLS 253
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
IK+ P E+ G+++ +S +E PG+
Sbjct: 254 IKETIPGPWSNIEERA--AKGTILEGKVKRLTSFGAFVEVFPGV 295
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV+ + E +++ S K+ + W+ R I G+ +GAF+ +
Sbjct: 233 GQGVTVKVLSVDPENERISLSIKETIPGPWSNIEERAAKGTILEGKVKRLTSFGAFVEV- 291
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S+++ I + L EG +V+VKV+ ++ E R+ LSIK+L E+P
Sbjct: 292 FPG----VEGLVHISQIAHKHINTPHEALKEGQDVQVKVLDVNAEDGRLALSIKELLENP 347
>gi|254526843|ref|ZP_05138895.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
gi|221538267|gb|EEE40720.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
Length = 363
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S +I L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 200 SARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVNDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP 134
K LE +P
Sbjct: 314 KALEPEP 320
>gi|452124296|ref|ZP_21936880.1| 30S ribosomal protein S1 [Bordetella holmesii F627]
gi|452127693|ref|ZP_21940273.1| 30S ribosomal protein S1 [Bordetella holmesii H558]
gi|451923526|gb|EMD73667.1| 30S ribosomal protein S1 [Bordetella holmesii F627]
gi|451926562|gb|EMD76695.1| 30S ribosomal protein S1 [Bordetella holmesii H558]
Length = 570
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 213 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 266
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ + ++++
Sbjct: 267 GVKQLGEDPWV-GLARRYPQGTRLFGKVTNLT 297
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 334 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 392
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID EK RI+L IKQLE
Sbjct: 393 -PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDELEAVVLGIDTEKERISLGIKQLEG 447
Query: 133 DPL 135
DP
Sbjct: 448 DPF 450
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 298 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 352
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 353 LGMKQCRQNP 362
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +L G + +I IDR+ + LS+K + ET++++
Sbjct: 485 GYLRASEISSGRVEDATTVLTAGANIEAMIINIDRKARSVQLSVKARDSAETAETIQRM- 543
Query: 144 PQDGSVISDSSSMSS 158
D S S ++++ +
Sbjct: 544 -SDASASSGTTNLGA 557
>gi|421217364|ref|ZP_15674265.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070335]
gi|395584850|gb|EJG45242.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070335]
Length = 264
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 104 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 162
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 163 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 218
Query: 135 LLETLEK 141
E +K
Sbjct: 219 AQEEGQK 225
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAF+ L DGL HLT E+S + + ++ G+E
Sbjct: 53 GKLAVGDVVTGKVARITSFGAFVDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 106
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 107 IEVKILDLNEEEGRVSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 164
Query: 169 GLGAI 173
G+ +
Sbjct: 165 GIDGL 169
>gi|254435439|ref|ZP_05048946.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
gi|207088550|gb|EDZ65822.1| ribosomal protein S1 [Nitrosococcus oceani AFC27]
Length = 580
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K + W +++ R N +D G
Sbjct: 332 NKNIHPSKMVQVGEEVEVMVLDIDEERRRISLGMKQCLPNPWEEFAHRYNKDDRVAGEIK 391
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G F+ L + GLVH+S++SW + IRD +GD+V V+ ID E+
Sbjct: 392 SITDFGIFVGLE-----GGIDGLVHLSDISWSASGEEIIRD-YKKGDQVEAVVLAIDPER 445
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQLE+DP
Sbjct: 446 ERISLGVKQLEDDPF 460
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L L GL+H++++SW I+ +++N GD++ V+V+K DRE+ R++L
Sbjct: 223 DYGAFVDLG------GLDGLLHITDMSWKRIKHPSEVVNIGDDITVQVLKFDRERQRVSL 276
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 277 GLKQMGEDP 285
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+V+V++ + E +++ K + W + R G+ DYG F+ +
Sbjct: 257 GDDITVQVLKFDRERQRVSLGLKQMGEDPWKDLARRYLDGTRLFGKVTNVTDYGCFVEIE 316
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+SE+ W ++I ++ G+EV V V+ ID E+ RI+L +KQ
Sbjct: 317 -----EGVEGLVHMSEMDW-TNKNIHPSKMVQVGEEVEVMVLDIDEERRRISLGMKQCLP 370
Query: 133 DP 134
+P
Sbjct: 371 NP 372
>gi|161610761|ref|NP_879751.2| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
gi|384203409|ref|YP_005589148.1| 30S ribosomal protein S1 [Bordetella pertussis CS]
gi|332381523|gb|AEE66370.1| 30S ribosomal protein S1 [Bordetella pertussis CS]
Length = 571
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 214 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 267
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ + ++++
Sbjct: 268 GVKQLGEDPWV-GLARRYPQGTRLFGKVTNLT 298
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 335 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID EK RI+L IKQLE
Sbjct: 394 -PGGI---DGLVHLSDLSWTESGEEAVRN-FKKGDELEAVVLGIDTEKERISLGIKQLEG 448
Query: 133 DPL 135
DP
Sbjct: 449 DPF 451
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 299 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 353
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 354 LGMKQCRQNP 363
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +L G+ + ++ IDR+ I LSIK + ET++++
Sbjct: 486 GYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAETAETIQRM- 544
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
+S SS +N LGA+ + L +
Sbjct: 545 --------SEASASSGTTN-------LGALLKAKLDQ 566
>gi|161609266|ref|NP_890000.2| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
gi|161610386|ref|NP_885303.2| 30S ribosomal protein S1 [Bordetella parapertussis 12822]
Length = 571
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 214 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 267
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ + ++++
Sbjct: 268 GVKQLGEDPWV-GLARRYPQGTRLFGKVTNLT 298
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 335 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 394 -PGGI---DGLVHLSDLSWTESGEEAVRN-FKKGDELEAVVLGIDTDKERISLGIKQLEG 448
Query: 133 DPL 135
DP
Sbjct: 449 DPF 451
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 299 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 353
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 354 LGMKQCRQNP 363
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +L G+ + ++ IDR+ I LSIK + ET++++
Sbjct: 486 GYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAETAETIQRM- 544
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
+S SS +N LGA+ + L +
Sbjct: 545 --------SEASASSGTTN-------LGALLKAKLDQ 566
>gi|310828094|ref|YP_003960451.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308739828|gb|ADO37488.1| hypothetical protein ELI_2506 [Eubacterium limosum KIST612]
Length = 730
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVED-----IFVGRDYGAFIHLR 74
G I KVI N+E KK+ S K + W ++ V+D I D+GAF +
Sbjct: 551 GQEIEAKVISKNDEDKKIKLSVKALKERPWEEFVKNYKVDDEVEVKITNVLDFGAFAEI- 609
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GL+HVSE+S+D ++ + +L GD V+VK+I I+ EK +I+LSIK E P
Sbjct: 610 ----LPGVEGLIHVSEISYDRVESVAAVLKPGDVVKVKIIGINTEKEKISLSIKATLEAP 665
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++G F+ L DG VH S+++W+ + +D++ +G E+ KVI + E +I L
Sbjct: 517 NFGIFVDLNGIDGF------VHRSDLTWERANEPKDLVEKGQEIEAKVISKNDEDKKIKL 570
Query: 126 SIKQLEEDP 134
S+K L+E P
Sbjct: 571 SVKALKERP 579
>gi|387770311|ref|ZP_10126494.1| ribosomal protein S1 [Pasteurella bettyae CCUG 2042]
gi|386904673|gb|EIJ69462.1| ribosomal protein S1 [Pasteurella bettyae CCUG 2042]
Length = 549
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K D++++R++L
Sbjct: 205 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDKDRTRVSL 258
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 259 GLKQLGQDP 267
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G ++ V V++ +EE +++ K WN+++ N D G+
Sbjct: 314 NKNIHPSKVVSLGDVVEVMVLEIDEERRRISLGLKQCKANPWNQFAETHNKGDKVEGKIK 373
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GD+V V+++D K
Sbjct: 374 SITDFGIFIGLEGG-----IDGLVHLSDISWNVAGEEAVRN-YKKGDDVAAVVLQVDAVK 427
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 428 ERISLGIKQLEEDPF 442
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 290 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDVVEVMVLEIDEERRRI 343
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 344 SLGLKQCKANP 354
>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
gi|417007625|ref|ZP_11945400.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
Length = 403
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSRVNVEDIFVGR-----DYGAF 70
G + +K+ + + +L+ S KD + ++K +S++ V D+ G+ ++G F
Sbjct: 155 GKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGGF 214
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I + DGL VH+SE+S+ + D+L G +V++KVI ID ++ RI+LSIKQ
Sbjct: 215 IDVGGVDGL------VHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQT 268
Query: 131 EEDPL 135
E P
Sbjct: 269 EPSPF 273
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + +KVI +++ ++ S K + + + ++ +N D+F G ++GAF+ +
Sbjct: 243 AGQDVKIKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSLTNFGAFVEV 302
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
DG+ GLVHVSE+S + D+L G V+VKV+ ID RI+LSIK
Sbjct: 303 --ADGI---QGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIK 352
>gi|410478645|ref|YP_006766282.1| 30S ribosomal protein S1 [Leptospirillum ferriphilum ML-04]
gi|406773897|gb|AFS53322.1| ribosomal protein S1 [Leptospirillum ferriphilum ML-04]
Length = 591
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR----------DYG 68
L G I V++I+ N++ ++ S + + W +V ++ + G DYG
Sbjct: 171 LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEVLEGIVKNITDYG 230
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H++++SW + + ++ +N GD+V V V+K D+E R++L +K
Sbjct: 231 AFIDLGGIDGL------LHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKETGRVSLGLK 284
Query: 129 QLEEDP 134
QL DP
Sbjct: 285 QLTPDP 290
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 20/143 (13%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVN 57
MS +H K P K + G I V+V++ +E+ +K+ K W+ +
Sbjct: 333 MSWNHEVKHPSKIMS------VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVEGKYP 386
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRV 111
V + G+ D+GAF+ L + GL+H+S++SW ++ ++ +G +V V
Sbjct: 387 VGAVVSGKIKSLTDFGAFVGLD-----EGIDGLIHISDMSWTKHVRHPSEVFKKGQKVDV 441
Query: 112 KVIKIDREKSRITLSIKQLEEDP 134
V+KI++E+ R++L KQ+ EDP
Sbjct: 442 VVLKIEKERQRLSLGFKQVSEDP 464
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Query: 37 MKKLVFSEKDAVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 94
+K+L V ++Y +RVN + + DYGAF+ + + GL+HV+E+SW+
Sbjct: 283 LKQLTPDPWTTVGSRYPEGTRVNARVVSI-TDYGAFLEIE-----PGIEGLMHVTEMSWN 336
Query: 95 L-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++ I++ GD + V+V+KID + +I+L +KQL +P
Sbjct: 337 HEVKHPSKIMSVGDTIEVQVLKIDEKNRKISLGLKQLGPNP 377
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+G F+ L + GLVHVSEV + Q + + G + V+VIK+D + +I L
Sbjct: 488 DFGFFVEL-----AEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAERKIGL 542
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
S+K + D LE V Q
Sbjct: 543 SMKAVSADAPLEPAPAVSAQ 562
>gi|423016382|ref|ZP_17007103.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans AXX-A]
gi|338780636|gb|EGP45041.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans AXX-A]
Length = 570
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 213 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 266
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 267 GVKQLGEDPWV-GLARRYPQ 285
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 334 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 392
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 393 -PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDEIEAVVLGIDTDKERISLGIKQLEG 447
Query: 133 DPL 135
DP
Sbjct: 448 DPF 450
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 298 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 352
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 353 LGMKQCRQNP 362
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +LN G+ + ++ IDR+ I LSIK + ET++++
Sbjct: 485 GYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKARDNAETAETIQRM- 543
Query: 144 PQDGSVISDSSSMSS 158
D S S ++++ +
Sbjct: 544 -SDASASSGTTNLGA 557
>gi|260893017|ref|YP_003239114.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ammonifex
degensii KC4]
gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii
KC4]
Length = 654
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV-----------WNKYSSRVNVEDIFVGR--DYGA 69
G + KVI+ + KK+V S K + W K V+ + V R +GA
Sbjct: 427 GQKVRAKVIELDRSRKKVVLSRKAVLEEEAERRRRETWEKLQEGAVVKGV-VRRIVPFGA 485
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
FI L DGL +HVSE++W + ++L EG E+ VKVIK+DRE +++LS K
Sbjct: 486 FIDLGGVDGL------LHVSEIAWHRVNSPDEVLKEGQEIEVKVIKVDRENEKVSLSRKA 539
Query: 130 LEEDPLLETLEK 141
L DP + EK
Sbjct: 540 LLPDPWEKVPEK 551
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVE---DIFVGR--DYGAFIHLR 74
G I VKVI+ + E +K+ S K + W K + V ++ V R +GAF+ L
Sbjct: 516 GQEIEVKVIKVDRENEKVSLSRKALLPDPWEKVPEKYPVGSLVEVKVVRLAPFGAFVELE 575
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
+ GL+H+S + ++ D+L EGD V V+VI D ++ R+ LS+++
Sbjct: 576 -----PGVEGLIHISHFADWHVEKPEDVLKEGDVVTVRVISFDPQEKRLRLSLRE 625
>gi|407015342|gb|EKE29231.1| RNA binding S1 protein [uncultured bacterium (gcode 4)]
Length = 412
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 3 PSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV-------WNKYSSR 55
P P+K + + + L G V+VI +++ KK++FSEK AV K
Sbjct: 148 PRVEWANPEKILAHLNR-LVGKPFKVRVINVDQDGKKIIFSEKAAVEEERGAALEKLKIG 206
Query: 56 VNVEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114
VE + G YG F+ L GLVHVSE+ W + D GD+++V+VI
Sbjct: 207 AQVEWVVSGILTYGLFVTFN------GLEGLVHVSEIDWGHVNDPSKFAKVGDKIKVEVI 260
Query: 115 KIDREKSRITLSIKQLEEDPLLETLEK 141
ID +K I+LS+K+L+ +P +E +K
Sbjct: 261 GIDADK--ISLSMKRLKHNPWVELAKK 285
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+G F+ L DG ++GL+H+SE+S ++++++ D + GD V KVI D + RI LS
Sbjct: 302 FGIFLSL---DG--GISGLIHLSEISNEIVKNVEDYVKVGDLVEAKVITFDPNEKRIGLS 356
Query: 127 IKQLEE 132
+K EE
Sbjct: 357 LKTQEE 362
>gi|421484149|ref|ZP_15931721.1| 30S ribosomal protein S1 [Achromobacter piechaudii HLE]
gi|400197856|gb|EJO30820.1| 30S ribosomal protein S1 [Achromobacter piechaudii HLE]
Length = 570
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 213 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 266
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 267 GVKQLGEDPWV-GLARRYPQ 285
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 334 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 392
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 393 -PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDEIEAVVLGIDTDKERISLGIKQLEG 447
Query: 133 DPL 135
DP
Sbjct: 448 DPF 450
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 298 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 352
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 353 LGMKQCRQNP 362
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +LN G+ + ++ IDR+ I LSIK + +T++++
Sbjct: 485 GYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKARDNAETADTIQRM- 543
Query: 144 PQDGSVISDSSSMSS 158
D S S ++++ +
Sbjct: 544 -SDASASSGTTNLGA 557
>gi|157149853|ref|YP_001450520.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157074647|gb|ABV09330.1| 30S ribosomal protein S1 [Streptococcus gordonii str. Challis
substr. CH1]
Length = 401
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQEVTVKVLEVNPANERVSLSIKALEERP 354
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G VI + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|388491680|gb|AFK33906.1| unknown [Medicago truncatula]
Length = 409
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 20/159 (12%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
+ +K ++ ++E +LV S + AV ++ + + G + YGA I +
Sbjct: 225 VPLKFVEVDQEQARLVLSHRKAVAG-IQGQLGIGSVVTGTVQSLKPYGALIDIG-----G 278
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
++GL+HVS++S D I DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 279 GISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 338
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ E E++ I+ + +M+ ++ +P GL
Sbjct: 339 PTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL 377
>gi|359798458|ref|ZP_09301029.1| 30S ribosomal protein S1 [Achromobacter arsenitoxydans SY8]
gi|359363280|gb|EHK65006.1| 30S ribosomal protein S1 [Achromobacter arsenitoxydans SY8]
Length = 570
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 213 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 266
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 267 GVKQLGEDPWV-GLARRYPQ 285
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 334 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 392
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 393 -PGGI---DGLVHLSDLSWTEAGEEAVRN-FKKGDEIEAVVLGIDTDKERISLGIKQLEG 447
Query: 133 DPL 135
DP
Sbjct: 448 DPF 450
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 298 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 352
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 353 LGMKQCRQNP 362
Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +L G+ + ++ IDR+ I LSIK + +T++++
Sbjct: 485 GYLRASEISSGRVEDATTVLTAGENIEAMIVNIDRKTRSIQLSIKARDNAETADTIQRM- 543
Query: 144 PQDGSVISDSSSMSS 158
D S S ++++ +
Sbjct: 544 -SDASASSGTTNLGA 557
>gi|1075612|pir||S51485 ribosomal protein S1 - Synechococcus sp. (PCC 6301)
gi|666973|dbj|BAA05946.1| ribosomal protein S1 [Synechococcus elongatus PCC 6301]
Length = 307
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 75/129 (58%), Gaps = 11/129 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S + + L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + Y
Sbjct: 151 STRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I+ + N DEV+V +I +D E+ RI+LS
Sbjct: 211 GAFIDIG------GVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDPLL 136
KQLE +P L
Sbjct: 265 KQLEPEPGL 273
>gi|187477852|ref|YP_785876.1| 30S ribosomal protein S1 [Bordetella avium 197N]
gi|115422438|emb|CAJ48963.1| 30S ribosomal protein S1 [Bordetella avium 197N]
Length = 570
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 213 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 266
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ + ++++
Sbjct: 267 GVKQLGEDPWV-GLARRYPQGTRLFGKVTNLT 297
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 334 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 392
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID EK RI+L IKQLE
Sbjct: 393 -PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDEIEAVVLGIDTEKERISLGIKQLEG 447
Query: 133 DPL 135
DP
Sbjct: 448 DPF 450
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 298 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 352
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 353 LGMKQCRQNP 362
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +LN GD V +I IDR+ I LSIK + ET++++
Sbjct: 485 GYLRASEISSGRVEDATTVLNVGDNVEAMIINIDRKARSIQLSIKARDNAETAETIQRM- 543
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
+S SS +N LGA+ + L +
Sbjct: 544 --------SEASASSGTTN-------LGALLKAKLDQ 565
>gi|410472341|ref|YP_006895622.1| 30S ribosomal protein S1 [Bordetella parapertussis Bpp5]
gi|412338592|ref|YP_006967347.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 253]
gi|427815529|ref|ZP_18982593.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 1289]
gi|33574088|emb|CAE38413.1| 30S ribosomal protein S1 [Bordetella parapertussis]
gi|33576879|emb|CAE33959.1| 30S ribosomal protein S1 [Bordetella bronchiseptica RB50]
gi|408442451|emb|CCJ48991.1| 30S ribosomal protein S1 [Bordetella parapertussis Bpp5]
gi|408768426|emb|CCJ53189.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 253]
gi|410566529|emb|CCN24092.1| 30S ribosomal protein S1 [Bordetella bronchiseptica 1289]
Length = 576
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 219 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 272
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 273 GVKQLGEDPWV-GLARRYPQ 291
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 340 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 398
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 399 -PGGI---DGLVHLSDLSWTESGEEAVRN-FKKGDELEAVVLGIDTDKERISLGIKQLEG 453
Query: 133 DPL 135
DP
Sbjct: 454 DPF 456
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 304 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 358
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 359 LGMKQCRQNP 368
Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +L G+ + ++ IDR+ I LSIK + ET++++
Sbjct: 491 GYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAETAETIQRM- 549
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
+S SS +N LGA+ + L +
Sbjct: 550 --------SEASASSGTTN-------LGALLKAKLDQ 571
>gi|77163718|ref|YP_342243.1| 30S ribosomal protein S1 [Nitrosococcus oceani ATCC 19707]
gi|76882032|gb|ABA56713.1| SSU ribosomal protein S1P [Nitrosococcus oceani ATCC 19707]
Length = 561
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K + W +++ R N +D G
Sbjct: 313 NKNIHPSKMVQVGEEVEVMVLDIDEERRRISLGMKQCLPNPWEEFAHRYNKDDRVAGEIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G F+ L + GLVH+S++SW + IRD +GD+V V+ ID E+
Sbjct: 373 SITDFGIFVGLE-----GGIDGLVHLSDISWSASGEEIIRD-YKKGDQVEAVVLAIDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L +KQLE+DP
Sbjct: 427 ERISLGVKQLEDDPF 441
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L L GL+H++++SW I+ +++N GD++ V+V+K DRE+ R++L
Sbjct: 204 DYGAFVDL------GGLDGLLHITDMSWKRIKHPSEVVNIGDDITVQVLKFDRERQRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+V+V++ + E +++ K + W + R G+ DYG F+ +
Sbjct: 238 GDDITVQVLKFDRERQRVSLGLKQMGEDPWKDLARRYLDGTRLFGKVTNVTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+SE+ W ++I ++ G+EV V V+ ID E+ RI+L +KQ
Sbjct: 298 -----EGVEGLVHMSEMDW-TNKNIHPSKMVQVGEEVEVMVLDIDEERRRISLGMKQCLP 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>gi|255320506|ref|ZP_05361687.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
gi|262378398|ref|ZP_06071555.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
gi|421463949|ref|ZP_15912642.1| ribosomal protein S1 [Acinetobacter radioresistens WC-A-157]
gi|421856454|ref|ZP_16288820.1| 30S ribosomal protein S1 [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|255302478|gb|EET81714.1| ribosomal protein S1 [Acinetobacter radioresistens SK82]
gi|262299683|gb|EEY87595.1| ribosomal protein S1 [Acinetobacter radioresistens SH164]
gi|400206323|gb|EJO37300.1| ribosomal protein S1 [Acinetobacter radioresistens WC-A-157]
gi|403188152|dbj|GAB75021.1| 30S ribosomal protein S1 [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 557
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +++ G EV VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP + + +
Sbjct: 258 GLKQLGEDPWMAIMNR 273
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ + + G
Sbjct: 313 NKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKNHDKGEKVSGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L P G+ GLVH+S++SW+ + IR +GD V ++ +D E
Sbjct: 373 SITDFGIFIGL--PGGI---DGLVHLSDISWNEQGEEAIRR-YKKGDTVEAVILSVDAEG 426
Query: 121 SRITLSIKQLEEDPL 135
+RI+L IKQL DP
Sbjct: 427 NRISLGIKQLNSDPF 441
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 22/125 (17%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSS----RVNVEDIFVGRDYGAFI 71
G ++VKV++ + E ++ K A+ N+Y + V ++ DYG F
Sbjct: 238 GQEVTVKVLKFDRERNRVSLGLKQLGEDPWMAIMNRYPKGSIVKARVTNL---TDYGCFA 294
Query: 72 HLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQ 129
+ + GLVHVSE+ ++I ++ GDEV V V+++D E+ RI+L IKQ
Sbjct: 295 EI-----AEGVEGLVHVSEMD-HTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQ 348
Query: 130 LEEDP 134
+P
Sbjct: 349 TRANP 353
>gi|408415249|ref|YP_006625956.1| 30S ribosomal protein S1 [Bordetella pertussis 18323]
gi|410421035|ref|YP_006901484.1| 30S ribosomal protein S1 [Bordetella bronchiseptica MO149]
gi|427818082|ref|ZP_18985145.1| 30S ribosomal protein S1 [Bordetella bronchiseptica D445]
gi|427826016|ref|ZP_18993078.1| 30S ribosomal protein S1 [Bordetella bronchiseptica Bbr77]
gi|33571751|emb|CAE41252.1| 30S ribosomal protein S1 [Bordetella pertussis Tohama I]
gi|401777419|emb|CCJ62714.1| 30S ribosomal protein S1 [Bordetella pertussis 18323]
gi|408448330|emb|CCJ60011.1| 30S ribosomal protein S1 [Bordetella bronchiseptica MO149]
gi|410569082|emb|CCN17167.1| 30S ribosomal protein S1 [Bordetella bronchiseptica D445]
gi|410591281|emb|CCN06379.1| 30S ribosomal protein S1 [Bordetella bronchiseptica Bbr77]
Length = 576
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 219 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 272
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 273 GVKQLGEDPWV-GLARRYPQ 291
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 340 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 398
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID EK RI+L IKQLE
Sbjct: 399 -PGGI---DGLVHLSDLSWTESGEEAVRN-FKKGDELEAVVLGIDTEKERISLGIKQLEG 453
Query: 133 DPL 135
DP
Sbjct: 454 DPF 456
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 304 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 358
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 359 LGMKQCRQNP 368
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +L G+ + ++ IDR+ I LSIK + ET++++
Sbjct: 491 GYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAETAETIQRM- 549
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
+S SS +N LGA+ + L +
Sbjct: 550 --------SEASASSGTTN-------LGALLKAKLDQ 571
>gi|311104916|ref|YP_003977769.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans A8]
gi|310759605|gb|ADP15054.1| ribosomal protein S1 [Achromobacter xylosoxidans A8]
Length = 576
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 219 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 272
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 273 GVKQLGEDPWV-GLARRYPQ 291
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 340 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 398
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 399 -PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDEIEAVVLGIDTDKERISLGIKQLEG 453
Query: 133 DPL 135
DP
Sbjct: 454 DPF 456
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 304 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 358
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 359 LGMKQCRQNP 368
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +LN G+ + ++ IDR+ I LSIK + ET++++
Sbjct: 491 GYLRASEISSGRVEDATTVLNAGENIEAMIVNIDRKTRSIQLSIKARDNAETAETIQRM- 549
Query: 144 PQDGSVISDSSSMSS 158
D S S ++++ +
Sbjct: 550 -SDASASSGTTNLGA 563
>gi|293604177|ref|ZP_06686585.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
gi|422322114|ref|ZP_16403156.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans C54]
gi|292817402|gb|EFF76475.1| 30S ribosomal protein S1 [Achromobacter piechaudii ATCC 43553]
gi|317402985|gb|EFV83524.1| 30S ribosomal protein S1 [Achromobacter xylosoxidans C54]
Length = 575
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 218 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 271
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 272 GVKQLGEDPWV-GLARRYPQ 290
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 339 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 397
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 398 -PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDEIEAVVLGIDTDKERISLGIKQLEG 452
Query: 133 DPL 135
DP
Sbjct: 453 DPF 455
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 303 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 357
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 358 LGMKQCRQNP 367
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +L G+ + ++ IDR+ I LSIK + ET++++
Sbjct: 490 GYLRASEISSGRVEDATTVLTAGENIEAMIVNIDRKTRSIQLSIKARDNAETAETIQRM- 548
Query: 144 PQDGSVISDSSSMSS 158
D S S ++++ +
Sbjct: 549 -SDASASSGTTNLGA 562
>gi|163856200|ref|YP_001630498.1| 30S ribosomal protein S1 [Bordetella petrii DSM 12804]
gi|163259928|emb|CAP42229.1| 30S ribosomal protein S1 [Bordetella petrii]
Length = 575
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 218 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 271
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP + L + PQ + ++++
Sbjct: 272 GVKQLGEDPWV-GLARRYPQGTRLFGKVTNLT 302
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++++ D G D+G F+ L
Sbjct: 339 GEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGL- 397
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 398 -PGGI---DGLVHLSDLSWTESGEEAVRN-FKKGDEIEAVVLGIDTDKERISLGIKQLEG 452
Query: 133 DPL 135
DP
Sbjct: 453 DPF 455
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ G+EV V V++ID ++ RI+
Sbjct: 303 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRIS 357
Query: 125 LSIKQLEEDP 134
L +KQ ++P
Sbjct: 358 LGMKQCRQNP 367
>gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG']
Length = 591
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR----------DYG 68
L G I V++I+ N++ ++ S + + W +V ++ + G DYG
Sbjct: 171 LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEILEGIVKNITDYG 230
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H++++SW + + ++ +N GD+V V V+K D+E R++L +K
Sbjct: 231 AFIDLGGIDGL------LHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKETGRVSLGLK 284
Query: 129 QLEEDP 134
QL DP
Sbjct: 285 QLTPDP 290
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 20/143 (13%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVN 57
MS +H K P K + G I V+V++ +E+ +K+ K W+ ++
Sbjct: 333 MSWNHEVKHPSKIMS------VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVETKYP 386
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRV 111
V + G+ D+GAF+ L + GL+H+S++SW ++ ++ +G +V V
Sbjct: 387 VGAVVSGKIKSLTDFGAFVGLD-----EGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEV 441
Query: 112 KVIKIDREKSRITLSIKQLEEDP 134
V+KI++E+ R++L KQ+ EDP
Sbjct: 442 VVLKIEKERQRLSLGFKQVSEDP 464
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 37 MKKLVFSEKDAVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 94
+K+L V +Y +RVN + + DYGAF+ + + GL+HV+E+SW+
Sbjct: 283 LKQLTPDPWTTVGTRYPEGTRVNARVVSI-TDYGAFLEIE-----PGIEGLMHVTEMSWN 336
Query: 95 L-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++ I++ GD + V+V+KID + +I+L +KQL +P
Sbjct: 337 HEVKHPSKIMSVGDTIEVQVLKIDEKNRKISLGLKQLGPNP 377
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+G F+ L + GLVHVSEV + Q + + G + V+VIK+D + +I L
Sbjct: 488 DFGFFVEL-----AEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAERKIGL 542
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
S+K + D LE V Q
Sbjct: 543 SMKAVSADSPLEAAPAVNAQ 562
>gi|424866581|ref|ZP_18290414.1| Ribosomal protein S1 [Leptospirillum sp. Group II 'C75']
gi|387222759|gb|EIJ77174.1| Ribosomal protein S1 [Leptospirillum sp. Group II 'C75']
Length = 591
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV--WNKYSSRVNVEDIFVGR----------DYG 68
L G I V++I+ N++ ++ S + + W +V ++ + G DYG
Sbjct: 171 LIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEILEGIVKNITDYG 230
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL +H++++SW + + ++ +N GD+V V V+K D+E R++L +K
Sbjct: 231 AFIDLGGIDGL------LHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKETGRVSLGLK 284
Query: 129 QLEEDP 134
QL DP
Sbjct: 285 QLTPDP 290
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 20/143 (13%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVN 57
MS +H K P K + G I V+V++ +E+ +K+ K W+ +
Sbjct: 333 MSWNHEVKHPSKIMS------VGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVEGKYP 386
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRV 111
V + G+ D+GAF+ L + GL+H+S++SW ++ ++ +G +V V
Sbjct: 387 VGAVVSGKIKSLTDFGAFVGLD-----EGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEV 441
Query: 112 KVIKIDREKSRITLSIKQLEEDP 134
V+KI++E+ R++L KQ+ EDP
Sbjct: 442 VVLKIEKERQRLSLGFKQVSEDP 464
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 37 MKKLVFSEKDAVWNKY--SSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWD 94
+K+L V +Y +RVN + + DYGAF+ + + GL+HV+E+SW+
Sbjct: 283 LKQLTPDPWTTVGTRYPEGTRVNARVVSI-TDYGAFLEIE-----PGIEGLMHVTEMSWN 336
Query: 95 L-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++ I++ GD + V+V+KID + +I+L +KQL +P
Sbjct: 337 HEVKHPSKIMSVGDTIEVQVLKIDEKNRKISLGLKQLGPNP 377
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+G F+ L + GLVHVSEV + Q + + G + V+VIK+D + +I L
Sbjct: 488 DFGFFVEL-----AEGIEGLVHVSEVDLESGQRLDQVYQPGMSLPVRVIKLDPAERKIGL 542
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
S+K + D LE V Q
Sbjct: 543 SMKAVSADSPLEAAPAVNAQ 562
>gi|332284738|ref|YP_004416649.1| transcription accessory protein [Pusillimonas sp. T7-7]
gi|330428691|gb|AEC20025.1| transcription accessory protein [Pusillimonas sp. T7-7]
Length = 571
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 7/80 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ ++L G EV KV+K D+EKSR++L
Sbjct: 214 DYGAFVDLGGIDGLLHIT------DMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSL 267
Query: 126 SIKQLEEDPLLETLEKVIPQ 145
+KQL EDP + L + PQ
Sbjct: 268 GVKQLGEDPWV-GLARRYPQ 286
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V++ +E+ +++ K W ++S D G D+G F+ L
Sbjct: 335 GDEVEVMVLEIDEDRRRISLGMKQCRANPWEEFSINFKRGDKVRGAIKSITDFGVFVGL- 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + +R+ +GDE+ V+ ID +K RI+L IKQLE
Sbjct: 394 -PGGI---DGLVHLSDLSWTETGEEAVRN-FKKGDEIDAVVLGIDTDKERISLGIKQLEG 448
Query: 133 DPL 135
DP
Sbjct: 449 DPF 451
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D R ++ GDEV V V++ID ++ RI+
Sbjct: 299 DYGAFVEVE-----AGIEGLVHVSEMDWTNKNVDPRKVVTLGDEVEVMVLEIDEDRRRIS 353
Query: 125 LSIKQLEEDP 134
L +KQ +P
Sbjct: 354 LGMKQCRANP 363
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE+S ++D +LN GD V +I IDR+ I LSIK + +T+++
Sbjct: 486 GYLRASEISTGRVEDASTVLNVGDTVDTMIINIDRKTRSIQLSIKARDNADTADTIQR-- 543
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
+SD+S+ SS +N LGA+ + L +
Sbjct: 544 ------MSDASA-SSGTTN-------LGALLKAKLDQ 566
>gi|254481764|ref|ZP_05095007.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
gi|214037893|gb|EEB78557.1| ribosomal protein S1 [marine gamma proteobacterium HTCC2148]
Length = 558
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 18/129 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E++A+ ++V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVMEAANSEEREALLETLQEGMSVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W I+ +I+ G E+ VK++K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQEIDVKILKFDRERNRVSLGLK 260
Query: 129 QLEEDPLLE 137
QL EDP +E
Sbjct: 261 QLGEDPWVE 269
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V+ +EE +++ K W+ ++S+ D G D+G FI L
Sbjct: 325 GDELEVMVLDIDEERRRISLGIKQCQQNPWDAFASKCQKGDKISGSIKSITDFGIFIGLE 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
++ GLVH+S++SW+ + +R+ +GDE+ ++ ID E+ RI+L +KQLE+
Sbjct: 385 -----GNIDGLVHLSDISWNETGEEAVRN-YKKGDEIETVILSIDPERERISLGVKQLED 438
Query: 133 DPL 135
DP
Sbjct: 439 DPF 441
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 18/123 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKY--SSRVNVEDIFVGRDYGAFIHL 73
G I VK+++ + E ++ K + +Y SRVN + I DYG F L
Sbjct: 238 GQEIDVKILKFDRERNRVSLGLKQLGEDPWVEITGRYPEGSRVNAK-ITNLTDYGCFAEL 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVHVSE+ W +++ I+N GDE+ V V+ ID E+ RI+L IKQ +
Sbjct: 297 E-----EGVEGLVHVSEMDW-TNKNVHPSKIVNLGDELEVMVLDIDEERRRISLGIKQCQ 350
Query: 132 EDP 134
++P
Sbjct: 351 QNP 353
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ G++ S++S D ++D R+ GD V K+ +DR+ + LSIK
Sbjct: 473 EVEGVLKASDISRDRVEDARNSFKVGDSVEAKITSVDRKNRGVALSIK 520
>gi|254468796|ref|ZP_05082202.1| 30S ribosomal protein S1 [beta proteobacterium KB13]
gi|207087606|gb|EDZ64889.1| 30S ribosomal protein S1 [beta proteobacterium KB13]
Length = 500
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +H+++++W I+ ++LN GDE+ KV+K D++K+R++L
Sbjct: 215 DYGAFVDLGGIDGL------LHITDLAWKRIKHPSEVLNVGDEIEAKVLKYDQDKNRVSL 268
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL +DP + LE+ P + S+++
Sbjct: 269 GLKQLGDDPWV-GLERRYPVSTRIFGKVSNLT 299
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I KV++ +++ ++ K D W R V G+ DYGAF+ +
Sbjct: 249 GDEIEAKVLKYDQDKNRVSLGLKQLGDDPWVGLERRYPVSTRIFGKVSNLTDYGAFVEIE 308
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GDEV V ++++D K R++L IKQ +E
Sbjct: 309 -----SGIEGLVHVSEMDW-TNKNIHPTKVVNLGDEVEVMILEVDEGKRRLSLGIKQCKE 362
Query: 133 DP 134
+P
Sbjct: 363 NP 364
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFP-DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G FI L DGL HL+ + +E + D +++ + +GDEV K++ ID +K RI+
Sbjct: 387 DFGIFIGLDGGIDGLIHLSD-ISATESNEDAVKNYK----KGDEVEAKILAIDVDKERIS 441
Query: 125 LSIKQLEED 133
L IKQL D
Sbjct: 442 LGIKQLSAD 450
>gi|427383600|ref|ZP_18880320.1| ribosomal protein S1 [Bacteroides oleiciplenus YIT 12058]
gi|425728305|gb|EKU91163.1| ribosomal protein S1 [Bacteroides oleiciplenus YIT 12058]
Length = 598
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++V ++ ++E K++ K W+ ++ + V D G+ DYGAFI + P
Sbjct: 263 LNVVILDFDDEKKRIALGLKQLTPHPWDALNAELKVGDKVKGKVVVMADYGAFIEIA-PG 321
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ +D + GDEV V+ +DRE+ +++L IKQL++DP
Sbjct: 322 ----VEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMSLGIKQLKQDP-W 376
Query: 137 ETLEKVIP 144
ET+E+ P
Sbjct: 377 ETIEEKYP 384
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G + KV++ N+E K +V S K + + ++ + G YG
Sbjct: 169 FVGKTMEFKVVKINQEFKNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYG 228
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
FI L DGL +H++++SW + D ++++ ++ V ++ D EK RI L +K
Sbjct: 229 VFIDLGGVDGL------IHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282
Query: 129 QLEEDP 134
QL P
Sbjct: 283 QLTPHP 288
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ + +G+ GL+H+S++SW ++ + G ++ V+V++ID+E R++
Sbjct: 398 NFGVFVEIE--EGV---DGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKENRRLS 452
Query: 125 LSIKQLEEDP 134
L KQLEE+P
Sbjct: 453 LGHKQLEENP 462
>gi|244539188|dbj|BAH83231.1| 30S ribosomal protein S1 [Candidatus Ishikawaella capsulata Mpkobe]
Length = 543
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL H+T +++W ++ +I++ G+E++VK++K DRE+ R++L
Sbjct: 204 DYGAFIDLGGIDGLLHIT------DMAWKRVKHPSEIVSVGNEIKVKILKFDRERIRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQ+ EDP + L K P+ +I ++++
Sbjct: 258 GLKQMGEDPWV-ALAKRYPEKTKLIGRVTNIT 288
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + + V+ +E+ +++ K W ++ + + D G+
Sbjct: 313 NKNIHPSKVVNIGDKVEIIVLDIDEDRRRISLGLKQCKANPWQSFAKKYHKGDKVKGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD--IRDILNEGDEVRVKVIKIDREK 120
D+G F+ L + GLVH+S++SW + D +R +GDEV V ++++D E+
Sbjct: 373 SITDFGIFLGLEGG-----IDGLVHLSDISWAISGDEAVRK-YKKGDEVDVIILQVDSER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQL EDP
Sbjct: 427 ERISLGIKQLSEDPF 441
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 16/123 (13%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G+ I VK+++ + E ++ K + W + R + +GR DYG F+ +
Sbjct: 237 VGNEIKVKILKFDRERIRVSLGLKQMGEDPWVALAKRYPEKTKLIGRVTNITDYGCFVEI 296
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ GLVH+SE+ W ++I ++N GD+V + V+ ID ++ RI+L +KQ +
Sbjct: 297 E-----EGVEGLVHISEMDW-TNKNIHPSKVVNIGDKVEIIVLDIDEDRRRISLGLKQCK 350
Query: 132 EDP 134
+P
Sbjct: 351 ANP 353
>gi|86608329|ref|YP_477091.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556871|gb|ABD01828.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 304
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLRF 75
L G ++ I+ N E KLV S++ AV ++Y+S VE G + +G F+ L
Sbjct: 159 LVGQSLTASFIEVNPEANKLVLSQRAAVKSENLSRYTSGQVVEGKVSGLKPFGVFVDLE- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP- 134
+TGL+H+ +VS + + D+ G ++ VI +D K R+ LS++ LE+ P
Sbjct: 218 ----EGVTGLLHIKQVSQSFVASLPDLFKPGQRIKAVVIDVDEAKGRMALSLRVLEKHPG 273
Query: 135 -LLETLEKVI 143
+LE L++V+
Sbjct: 274 EVLEQLDRVM 283
>gi|416134937|ref|ZP_11598398.1| putative ribosomal protein [Enterococcus faecium E4452]
gi|430828330|ref|ZP_19446452.1| ribosomal protein S1 [Enterococcus faecium E0269]
gi|431745738|ref|ZP_19534577.1| ribosomal protein S1 [Enterococcus faecium E2134]
gi|364092367|gb|EHM34748.1| putative ribosomal protein [Enterococcus faecium E4452]
gi|430483625|gb|ELA60693.1| ribosomal protein S1 [Enterococcus faecium E0269]
gi|430609944|gb|ELB47116.1| ribosomal protein S1 [Enterococcus faecium E2134]
Length = 415
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 13/115 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++VKV+ N E +++ S KD W++ ++ V + G +GAF+ + FP
Sbjct: 253 VNVKVLSINPEQERVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEV-FPG 311
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+S++S I ++L+EGDEV+VKV++I E+ RI LSIK LEE
Sbjct: 312 ----VEGLVHISQISHKHIATPHEVLHEGDEVKVKVLEIHPEEHRIALSIKALEE 362
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYGAF 70
G +S K+I+ +L+ S K V N+ S ++ D+ GR D+GAF
Sbjct: 161 GKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEGDVLSGRVARLTDFGAF 220
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ L DGL VHVSE+S + D+L D+V VKV+ I+ E+ R++LSIK
Sbjct: 221 VDLGGIDGL------VHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQERVSLSIKDT 274
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E K G+V+ + +S +E PG+
Sbjct: 275 QPGPWSEIDTKA--PVGTVLDGTVKRLTSFGAFVEVFPGV 312
>gi|320103097|ref|YP_004178688.1| RNA-binding S1 domain-containing protein [Isosphaera pallida ATCC
43644]
gi|319750379|gb|ADV62139.1| RNA binding S1 domain protein [Isosphaera pallida ATCC 43644]
Length = 531
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 18/129 (13%)
Query: 30 VIQANEEMKKLVFSEKDA-----------VWNKYS-SRVNVEDIFVGRDYGAFIHLRFPD 77
V +AN +K LV S + W + + +V + RD+GAF+ L
Sbjct: 284 VTEANPRLKNLVVSRRALLEREREELREKTWAELAEGQVRQGKVRTVRDFGAFVDL---- 339
Query: 78 GLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
+ GL+HVS++SW +D R +++ G E+ VKV+KIDRE +++L +KQL P +
Sbjct: 340 --GGVDGLLHVSDMSWVRNKDARAVVSVGQELTVKVLKIDRENRKVSLGLKQLTVSPWDD 397
Query: 138 TLEKVIPQD 146
+++ P D
Sbjct: 398 LAQRLAPGD 406
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++VKV++ + E +K+ K + W+ + R+ DI + D+GAF +
Sbjct: 366 GQELTVKVLKIDRENRKVSLGLKQLTVSPWDDLAQRLAPGDIVKVKVTKIMDFGAFAEIE 425
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GL+H+SE++ + + D+L EGDE+ VK++ ID + +I LS++Q E
Sbjct: 426 -----PAVEGLIHISELANRRVNRVSDVLKEGDELEVKILSIDPAERKIALSLRQALE 478
>gi|254515153|ref|ZP_05127214.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
gi|219677396|gb|EED33761.1| ribosomal protein S1 [gamma proteobacterium NOR5-3]
Length = 557
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 80/149 (53%), Gaps = 19/149 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+DA+ +V+ + DYG
Sbjct: 147 LEGKELDFKVIKLDQKRNNVVVSRRAVMEAANSVERDALLAGLQEGQSVKGVVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W I+ +I+ G E+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQELDVKVLKFDRERNRVSLGLK 260
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMS 157
QL EDP +E + P+ V++ ++++
Sbjct: 261 QLGEDPWVEITGR-YPEGSRVMAKVTNLT 288
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V+ +EE +++ K W+ ++S D G D+G FI L
Sbjct: 325 GDEVEVMVLDIDEERRRISLGIKQCQQNPWDAFASGATKGDRISGVIKSITDFGIFIGLE 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
++ GLVH+S++SW+ + +R+ +GDE+ ++ +D E+ RI+L +KQLE+
Sbjct: 385 -----GNIDGLVHLSDISWNETGEEAVRN-YKKGDEIETVILSVDPERERISLGVKQLED 438
Query: 133 DPL 135
DP
Sbjct: 439 DPF 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F + + GLVHVSE+ W +++ I+ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAEIE-----EGVEGLVHVSEMDW-TNKNVHPSKIVQLGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +++P
Sbjct: 343 SLGIKQCQQNP 353
>gi|56750845|ref|YP_171546.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81299505|ref|YP_399713.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|59802964|sp|P46228.4|RS1_SYNP6 RecName: Full=30S ribosomal protein S1
gi|56685804|dbj|BAD79026.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81168386|gb|ABB56726.1| SSU ribosomal protein S1P [Synechococcus elongatus PCC 7942]
Length = 307
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S + + L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + Y
Sbjct: 151 STRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I+ + N DEV+V +I +D E+ RI+LS
Sbjct: 211 GAFIDI------GGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLST 264
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 265 KQLEPEP 271
>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
Length = 410
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I K+I+ N +L+ S +D A + + ++V D+ G+ ++GAF
Sbjct: 157 GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARVFNELSVGDVVEGKVARMTNFGAF 216
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL VHVSE+S + + D+L+ G++V+VKV+ +D EK RI+LSIK
Sbjct: 217 IDLGGVDGL------VHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKAT 270
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E P+ G+V+ + +E PG+
Sbjct: 271 QPGP-WEAAASEAPE-GTVLEGTVKRVVDFGAFVEVFPGV 308
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 13/123 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K W +S + G D+GAF+ +
Sbjct: 246 GEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEAPEGTVLEGTVKRVVDFGAFVEV- 304
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVHVS++S I + D+L GD+V+VKV++++ +K R++LSIK LEE P
Sbjct: 305 FP----GVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIKALEEAP 360
Query: 135 LLE 137
E
Sbjct: 361 ARE 363
>gi|88705966|ref|ZP_01103674.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
gi|88699680|gb|EAQ96791.1| 30S ribosomal protein S1 [Congregibacter litoralis KT71]
Length = 557
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ G E+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVEVGQELDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP +E + P+ V++ ++++
Sbjct: 258 GLKQLGEDPWVEITGR-YPEGSRVMAKVTNLT 288
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V V+ +EE +++ K W+ ++S + D G D+G FI L
Sbjct: 325 GDEVEVMVLDIDEERRRISLGIKQCQQNPWDAFASGASKGDRISGVIKSITDFGIFIGLE 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
++ GLVH+S++SW+ + +R+ +GDE+ ++ +D E+ RI+L IKQLE+
Sbjct: 385 -----GNIDGLVHLSDISWNETGEEAVRN-YKKGDEIETVILSVDPERERISLGIKQLED 438
Query: 133 DPL 135
DP
Sbjct: 439 DPF 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F + + GLVHVSE+ W +++ I+ GDEV V V+ ID E+ RI
Sbjct: 289 DYGCFAEIE-----EGVEGLVHVSEMDW-TNKNVHPSKIVQLGDEVEVMVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +++P
Sbjct: 343 SLGIKQCQQNP 353
>gi|342904490|ref|ZP_08726289.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21621]
gi|341952911|gb|EGT79425.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21621]
Length = 549
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDALK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E + G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELVGGV 474
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKANPWTQFAE 359
>gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|335049631|ref|ZP_08542618.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|333762366|gb|EGL39864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
Length = 635
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV-----WNKYSSRVNVED-------IFVGRDYG 68
L G VK+I +E +LV S K + + + ++E+ + YG
Sbjct: 428 LVGQTFQVKIIDLDEHKNRLVLSRKAVLEVEREAKRAEALEHIEENTEMDGTVVKIMPYG 487
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L + GL+H+S++SW I + D+L+ GD V V V + DRE++RI+LS+K
Sbjct: 488 AFVDLG------GVEGLLHISDISWKRIGAVEDVLSVGDTVHVLVQQFDRERNRISLSMK 541
Query: 129 QLEEDPLLETLEK 141
L+++P + +EK
Sbjct: 542 ALQKNPWIAAIEK 554
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 33/46 (71%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
+ GL+H+S ++ ++D++ GD+++VK+IKID +K ++ LS+
Sbjct: 581 IQGLLHISALTEQRGAAVKDLVAIGDKMQVKIIKIDPDKHKVALSV 626
>gi|289208391|ref|YP_003460457.1| 30S ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
gi|288944022|gb|ADC71721.1| ribosomal protein S1 [Thioalkalivibrio sp. K90mix]
Length = 556
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRV-----NVEDIFVGR-------DYG 68
L G + K+I+ + +V S + V +YS+ N+++ V + DYG
Sbjct: 147 LEGKELEFKLIKLDRRRNNVVVSRRAVVEQEYSAEREELLKNLQEGAVVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ D++ G EV VKV+K DRE+ R++L +K
Sbjct: 207 AFLDLGGIDGLLHIT------DMAWKRVKHPSDVVEIGQEVEVKVLKFDRERMRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ +EE +++ K W+ +++ N + G+ D+G F+ L
Sbjct: 325 GDEVEVMILDLDEERRRISLGMKQCQSNPWDDFAANHNRGEKVRGQIKSITDFGVFVGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GL+H+S++SW + IR+ +GDEV V+ +D E+ RI+L +KQL+
Sbjct: 384 --DG--GIDGLIHLSDLSWHEAGEEAIRN-FKKGDEVEAVVLSVDPERERISLGLKQLDR 438
Query: 133 DPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
DP + + GS++ + + + IE G+ I
Sbjct: 439 DPFSNFVAE--HTKGSIVKGTVKEVDAKAAVIELADGIDGIL 478
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + E ++ K + W + R G+ DYG F+ +
Sbjct: 238 GQEVEVKVLKFDRERMRVSLGLKQLGEDPWENITRRYPTGTRIFGKVTNITDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG+ GLVHVSE+ W + + ++ GDEV V ++ +D E+ RI+L +KQ + +
Sbjct: 298 --DGV---EGLVHVSEMDWTNKNVNPGKVVAIGDEVEVMILDLDEERRRISLGMKQCQSN 352
Query: 134 P 134
P
Sbjct: 353 P 353
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ +++S D ++D R +LN G+EV K + +D++ I+LSIK K
Sbjct: 474 IDGILRAADISQDRVEDARTVLNVGEEVEAKFMGVDKKTRAISLSIKA-----------K 522
Query: 142 VIPQDGSVISDSSSMSSSNSN 162
++ ++SD S+ S+ ++
Sbjct: 523 DRAEEAEMVSDYSASGSATTS 543
>gi|34498501|ref|NP_902716.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
gi|34104356|gb|AAQ60715.1| 30S ribosomal protein S1 [Chromobacterium violaceum ATCC 12472]
Length = 563
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L GDEV KV+K D+EK+R++L
Sbjct: 208 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLAVGDEVEAKVLKFDQEKNRVSL 261
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 262 GLKQLGEDP 270
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG--- 64
K++H G + V +++ +E+ +++ K + WN+++ + D G
Sbjct: 317 NKNVHPSKVVQVGDEVEVMILEIDEDRRRISLGMKQCLANPWNEFADNFHKGDKLKGAIK 376
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G F+ L P G+ GLVH+S++SW+ + +R +GDEV V+ ID EK
Sbjct: 377 SITDFGVFVGL--PGGI---DGLVHLSDLSWNEAGEEAVRK-FKKGDEVEAVVLSIDVEK 430
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLE DP
Sbjct: 431 ERISLGIKQLEGDPF 445
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID ++ RI
Sbjct: 293 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQVGDEVEVMILEIDEDRRRI 346
Query: 124 TLSIKQLEEDP 134
+L +KQ +P
Sbjct: 347 SLGMKQCLANP 357
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
G + SE+S D ++D R +L +GD V ++ +DR+ I+LSIK
Sbjct: 480 GYLRASELSRDRVEDARSVLKDGDAVEAVIVAVDRKSRNISLSIK 524
>gi|254447274|ref|ZP_05060741.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
gi|198263413|gb|EDY87691.1| ribosomal protein S1 [gamma proteobacterium HTCC5015]
Length = 557
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVG-----RDYG 68
L G + KVI+ + + +V S + V YS + + I G DYG
Sbjct: 147 LEGKTLEFKVIKMDRKRNNVVVSRRAVVETMYSEEREELLNNLTEGAIVTGVVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W + +++ GDE++V V+K DREK+R++L +K
Sbjct: 207 AFLDLGGIDGLLHIT------DMAWKRVHHPSEVVAVGDEIQVVVLKFDREKTRVSLGLK 260
Query: 129 QLEEDP 134
QL +DP
Sbjct: 261 QLGDDP 266
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V ++ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 325 GDEVEVMILDIDEERRRISLGMKQCHANPWEAFAATHNKGDKIEGKIKSITDFGIFIGL- 383
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG + GLVH+S++SWD+ + +RD +GDE+ V+ +D E+ RI+L +KQLE+
Sbjct: 384 --DG--GIDGLVHLSDLSWDVAGEEAVRD-FKKGDELEAVVLAVDPERERISLGVKQLEQ 438
Query: 133 DPL 135
DP
Sbjct: 439 DPF 441
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYG F+ + + GLVHVSE+ W + + ++ GDEV V ++ ID E+ RI+
Sbjct: 289 DYGCFVEIE-----EGVEGLVHVSEMDWTNKNVNPGKMVALGDEVEVMILDIDEERRRIS 343
Query: 125 LSIKQLEEDP 134
L +KQ +P
Sbjct: 344 LGMKQCHANP 353
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
++ G + VSE+S + + D L+ GD+V K +DR+ ITLSIK + D
Sbjct: 473 NVEGYLRVSEISRERTESATDALSVGDKVEAKFTGVDRKMRAITLSIKAKDSD 525
>gi|89094012|ref|ZP_01166956.1| 30S ribosomal protein S1 [Neptuniibacter caesariensis]
gi|89081686|gb|EAR60914.1| 30S ribosomal protein S1 [Oceanospirillum sp. MED92]
Length = 559
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAFI L DGL H+T +++W I ++LN GDE+ VK+IK D+E RI+L
Sbjct: 204 NYGAFIDLGGVDGLLHIT------DMAWKRISHPSEMLNPGDEITVKIIKFDKESGRISL 257
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 258 GLKQLSSDP 266
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 16/136 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH G + V ++ +EE +++ K W ++ + D G
Sbjct: 314 KNIHPSKVVQIGDEVEVMILDVDEERRRISLGIKQCTANPWVTFAEQFAAGDKVTGTIKT 373
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G F+ L+ L GLVH+S+++W D +R +G+EV ++ ID EK
Sbjct: 374 ITDFGIFVGLQ-----EELDGLVHMSDITWEADAEAALRQ-FKKGEEVEAVILSIDAEKE 427
Query: 122 RITLSIKQLEEDPLLE 137
RI+L IKQLE DP E
Sbjct: 428 RISLGIKQLESDPFAE 443
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F + DG+ GLVHVSE+SW ++I ++ GDEV V ++ +D E+ RI
Sbjct: 289 DYGCFASIE--DGV---EGLVHVSEMSW-TNKNIHPSKVVQIGDEVEVMILDVDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLEKVIPQD 146
+L IKQ +P + E+ D
Sbjct: 343 SLGIKQCTANPWVTFAEQFAAGD 365
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ G + VSE+S D ++D +LN GDEV K++ +DR I LSIK E+
Sbjct: 474 IEGTLKVSEISVDRVEDASSVLNVGDEVEAKIVTLDRRNRVINLSIKAKEQ 524
>gi|123967873|ref|YP_001008731.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123197983|gb|ABM69624.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
AS9601]
Length = 363
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S I L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 200 SARRIKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPY 259
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 260 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLST 313
Query: 128 KQLEEDP 134
K LE +P
Sbjct: 314 KALEPEP 320
>gi|406917867|gb|EKD56549.1| RNA binding S1 protein [uncultured bacterium]
Length = 393
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 16/128 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVN----VEDIFVGR-DYGAFIH 72
+ G + VK+I + + KL+FSEK D V ++ + ++ + G D+G F+
Sbjct: 162 MIGQSLKVKIINFDTQSNKLIFSEKAAGDTVLDEKIQSIKPDQKLDGVITGVVDFGIFVD 221
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ L GLVH+SE+SWD ++++R + GD+V VKV+ I E ++ SIK+L +
Sbjct: 222 VG------GLEGLVHISEISWDKVENLRSMFRIGDKVEVKVLNI--EDRKVYFSIKRLTD 273
Query: 133 DPLLETLE 140
DP L+ ++
Sbjct: 274 DPWLKMVK 281
>gi|325110553|ref|YP_004271621.1| RNA binding S1 domain-containing protein [Planctomyces brasiliensis
DSM 5305]
gi|324970821|gb|ADY61599.1| RNA binding S1 domain protein [Planctomyces brasiliensis DSM 5305]
Length = 556
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN-------VEDIFVG-----RDYG 68
G ++ +VI N + + LV S K + + ++ V D G +DYG
Sbjct: 301 FVGQKLTARVIDVNPKKRNLVVSRKALLQEERAAAEAEAWQELAVGDQRTGTVKTIKDYG 360
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ + DGL +HV E+SW + D+L EG +V VKV+ ID+EK +I+L +K
Sbjct: 361 AFVDIGGVDGL------LHVRELSWTRVNHPSDVLQEGQQVEVKVLSIDQEKKKISLGMK 414
Query: 129 QLEEDP 134
QL +P
Sbjct: 415 QLMTNP 420
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VKV+ ++E KK+ K + W+ R + G D+GAF+ +
Sbjct: 392 GQQVEVKVLSIDQEKKKISLGMKQLMTNPWDYAEQRYPKNTVVTGLVKKTTDFGAFVEIE 451
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L GL+H+SE+ + + + D+L EG E +V++I++ K RI+LS+K ++ P
Sbjct: 452 -----PGLEGLIHISELDFRRVNRVEDVLTEGQETEAQVLEINKNKKRISLSLKSIKPKP 506
>gi|292492661|ref|YP_003528100.1| 30S ribosomal protein S1 [Nitrosococcus halophilus Nc4]
gi|291581256|gb|ADE15713.1| ribosomal protein S1 [Nitrosococcus halophilus Nc4]
Length = 560
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L L GL+H++++SW I+ +++N GDE+ V+V+K D+E+ R++L
Sbjct: 204 DYGAFVDL------GGLDGLLHITDMSWKRIKHPSEVVNIGDEITVQVLKFDKERQRVSL 257
Query: 126 SIKQLEEDP 134
+KQ+ EDP
Sbjct: 258 GLKQMGEDP 266
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V+ +EE +++ K W +++ + N D VG
Sbjct: 313 NKNIHPSKIVQVGDEVEVMVLDIDEERRRISLGMKQCQPNPWEEFAQKYNKGDRVVGEIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G F+ L + GLVH+S++SW + IRD +GD+V V+ ID E+
Sbjct: 373 SITDFGIFVGLE-----GGIDGLVHLSDISWSASGEETIRD-YKKGDQVEAVVLAIDPER 426
Query: 121 SRITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 427 ERISLGIKQLEEDPF 441
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+V+V++ ++E +++ K + W + R G+ DYG F+ +
Sbjct: 238 GDEITVQVLKFDKERQRVSLGLKQMGEDPWKDLARRYPDNTRLFGKVTNVTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+SE+ W ++I I+ GDEV V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHMSEMDW-TNKNIHPSKIVQVGDEVEVMVLDIDEERRRISLGMKQCQP 351
Query: 133 DPLLETLEK 141
+P E +K
Sbjct: 352 NPWEEFAQK 360
Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
G + SE+S + I D R LN GDE+ K IDR+ IT+SI+
Sbjct: 476 GHLRASEISRERIDDARSFLNVGDEIEAKFTGIDRKNRVITISIR 520
>gi|357635975|ref|ZP_09133850.1| 30S ribosomal protein S1 [Streptococcus macacae NCTC 11558]
gi|357584429|gb|EHJ51632.1| 30S ribosomal protein S1 [Streptococcus macacae NCTC 11558]
Length = 399
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 13/123 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ +EE ++ S K W+ ++ D+ G+ D+GAF+ +
Sbjct: 240 GEEIQVKVLAIDEEEGRVSLSLKATTPGPWDGVEQKLAAGDVVEGKVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G +V+VKV+ I+ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQDVKVKVLDINTADERVSLSIKALEERP 354
Query: 135 LLE 137
E
Sbjct: 355 AQE 357
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S++ V DI G +GAFI L DGL VHV+E+S + + ++ G+E
Sbjct: 189 SKLAVGDIVTGTVARLTSFGAFIDLGGVDGL------VHVTELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
++VKV+ ID E+ R++LS+K P +K+ G V+ + +E LP
Sbjct: 243 IQVKVLAIDEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVVEGKVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|169831339|ref|YP_001717321.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Desulforudis audaxviator MP104C]
gi|169638183|gb|ACA59689.1| hydroxymethylbutenyl pyrophosphate reductase [Candidatus
Desulforudis audaxviator MP104C]
Length = 677
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 20/141 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVG-----RDYGAF 70
G IS ++I+ N+ KK++ S K + +YS + D+ G +GAF
Sbjct: 451 GREISARIIELNKARKKVILSRKVLLEEEYSRKRKETLETTQEGDVVKGVVRRLTQFGAF 510
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + L GL+H+SE+SW I ++L GDE+ V+V++IDRE +++LS+KQ+
Sbjct: 511 VDI------GGLDGLLHISEISWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQV 564
Query: 131 EEDPLLETLEKVIPQDGSVIS 151
+P + +E GSV+S
Sbjct: 565 LPNPWEQVVENY--PVGSVVS 583
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLY-- 80
G + V+V++ + E +K+ S K + N + VE+ VG A + P G +
Sbjct: 540 GDELEVQVLRIDRENEKVSLSLKQVLPNPWEQ--VVENYPVGSVVSARVVRLVPFGAFVE 597
Query: 81 ---HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+S ++ + D++ EG ++ VKV+ +D E RI LS++++ +D
Sbjct: 598 LEPGVEGLVHISHLADWHVAKPEDVIAEGQQINVKVLSVDDENKRIRLSLREVVKD 653
>gi|406945079|gb|EKD76682.1| RNA binding S1 protein [uncultured bacterium]
Length = 413
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 15/139 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVN---VEDIFVGR-- 65
+ I E +G VKVI +E +KL+ SEK A + +++ V D G+
Sbjct: 158 KAKILERLQGYITQNFKVKVIDVDEVEEKLIVSEKMAKAEQQQEKISQYKVGDKVSGKIT 217
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSR 122
D+GAF+ +L GLVH+SE++W I D +D + GDEV ++I ID +
Sbjct: 218 GVVDFGAFVEFG-----ENLEGLVHISEIAWQRIDDPKDYVKVGDEVNAEIISIDN--GK 270
Query: 123 ITLSIKQLEEDPLLETLEK 141
I+LSI+ L +DP + E+
Sbjct: 271 ISLSIRNLIKDPWVNVAER 289
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 49 WNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W + R + D G +GAF+ L + GL H+SE+S+ + +IL
Sbjct: 283 WVNVAERYKINDTVKGLVLKLNPFGAFVELD-----RDIHGLAHISELSYRKLSSPSEIL 337
Query: 104 NEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138
GD KVI I+ K R+ LS K L E ET
Sbjct: 338 KIGDVYDFKVISIEPGKHRLGLSYKSLHEQKPAET 372
>gi|418029506|ref|ZP_12668044.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354689812|gb|EHE89785.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 401
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F
Sbjct: 154 GKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSF 213
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 214 VDIGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 267
Query: 131 EEDPL 135
E P
Sbjct: 268 EPSPF 272
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + +S +N D+ G ++GAF+ +
Sbjct: 243 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
DG+ GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 302 -ADGI---QGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVD 354
>gi|303256837|ref|ZP_07342851.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
gi|330998916|ref|ZP_08322643.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
gi|302860328|gb|EFL83405.1| ribosomal protein S1 [Burkholderiales bacterium 1_1_47]
gi|329576130|gb|EGG57649.1| ribosomal protein S1 [Parasutterella excrementihominis YIT 11859]
Length = 564
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L +G E+ KV+K D+EK+R++L
Sbjct: 211 DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLEQGQEITAKVLKFDQEKNRVSL 264
Query: 126 SIKQLEEDPLL 136
IKQL EDP +
Sbjct: 265 GIKQLGEDPWI 275
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + D + ++ G+EV V V++ID E+ RI+
Sbjct: 296 DYGAFVEIE-----AGIEGLVHVSEMDWTNKNVDPKKVVQLGEEVEVMVLEIDEERRRIS 350
Query: 125 LSIKQLEEDP 134
L +KQ + +P
Sbjct: 351 LGMKQCKPNP 360
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V++ +EE +++ K W ++++ D G+ D+G FI L
Sbjct: 332 GEEVEVMVLEIDEERRRISLGMKQCKPNPWEEFAATHQKGDTVKGQIKSITDFGVFIGLE 391
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVH+S++SW + ++ +G+E+ V+ ID E+ RI+L +KQ+ D
Sbjct: 392 -----GGIDGLVHLSDLSWTEPGEEAVRKYKKGEELEAVVLSIDVERERISLGVKQMSGD 446
Query: 134 PL 135
P
Sbjct: 447 PF 448
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142
G + SE+ D ++D R++L EGDEV + IDR+ I LSI+ ++ E + K+
Sbjct: 483 GYLRASEIGPDRVEDARNVLKEGDEVTAAITNIDRKARSIQLSIRAKDQAETREAMAKM 541
>gi|15902808|ref|NP_358358.1| 30S ribosomal protein S1 [Streptococcus pneumoniae R6]
gi|116515525|ref|YP_816245.1| 30S ribosomal protein S1 [Streptococcus pneumoniae D39]
gi|148984592|ref|ZP_01817860.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71]
gi|148988281|ref|ZP_01819728.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73]
gi|148993674|ref|ZP_01823121.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68]
gi|148997062|ref|ZP_01824716.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70]
gi|149007194|ref|ZP_01830858.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74]
gi|149021729|ref|ZP_01835760.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72]
gi|168485810|ref|ZP_02710318.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC1087-00]
gi|168490295|ref|ZP_02714494.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
SP195]
gi|168490951|ref|ZP_02715094.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC0288-04]
gi|168493016|ref|ZP_02717159.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC3059-06]
gi|169832652|ref|YP_001694315.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Hungary19A-6]
gi|182683776|ref|YP_001835523.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14]
gi|194397407|ref|YP_002037497.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54]
gi|221231643|ref|YP_002510795.1| 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC 700669]
gi|225854368|ref|YP_002735880.1| 30S ribosomal protein S1 [Streptococcus pneumoniae JJA]
gi|225856529|ref|YP_002738040.1| 30S ribosomal protein S1 [Streptococcus pneumoniae P1031]
gi|225858661|ref|YP_002740171.1| 30S ribosomal protein S1 [Streptococcus pneumoniae 70585]
gi|225861244|ref|YP_002742753.1| 30S ribosomal protein S1 [Streptococcus pneumoniae Taiwan19F-14]
gi|298229157|ref|ZP_06962838.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255735|ref|ZP_06979321.1| 30S ribosomal protein S1 [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503131|ref|YP_003725071.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A]
gi|307067459|ref|YP_003876425.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200]
gi|387626215|ref|YP_006062388.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV104]
gi|387757267|ref|YP_006064246.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae OXC141]
gi|387788461|ref|YP_006253529.1| 30S ribosomal protein S1 [Streptococcus pneumoniae ST556]
gi|410476302|ref|YP_006743061.1| 30S ribosomal protein S1 [Streptococcus pneumoniae gamPNI0373]
gi|415697969|ref|ZP_11456981.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 459-5]
gi|415749265|ref|ZP_11477209.1| 40S ribosomal protein S1 [Streptococcus pneumoniae SV35]
gi|415751948|ref|ZP_11479059.1| 40S ribosomal protein S1 [Streptococcus pneumoniae SV36]
gi|417312427|ref|ZP_12099141.1| hypothetical protein SPAR5_0822 [Streptococcus pneumoniae GA04375]
gi|417678812|ref|ZP_12328209.1| 30S ribosomal protein S1 [Streptococcus pneumoniae GA17570]
gi|417693784|ref|ZP_12342973.1| hypothetical protein SPAR120_0834 [Streptococcus pneumoniae
GA47901]
gi|418078350|ref|ZP_12715573.1| S1 RNA binding domain protein [Streptococcus pneumoniae 4027-06]
gi|418080305|ref|ZP_12717520.1| S1 RNA binding domain protein [Streptococcus pneumoniae 6735-05]
gi|418082788|ref|ZP_12719989.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44288]
gi|418084934|ref|ZP_12722118.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47281]
gi|418089254|ref|ZP_12726411.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA43265]
gi|418093693|ref|ZP_12730822.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49138]
gi|418095964|ref|ZP_12733079.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA16531]
gi|418098229|ref|ZP_12735328.1| S1 RNA binding domain protein [Streptococcus pneumoniae 6901-05]
gi|418100693|ref|ZP_12737779.1| S1 RNA binding domain protein [Streptococcus pneumoniae 7286-06]
gi|418102577|ref|ZP_12739653.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP070]
gi|418104909|ref|ZP_12741969.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44500]
gi|418114351|ref|ZP_12751342.1| S1 RNA binding domain protein [Streptococcus pneumoniae 5787-06]
gi|418116588|ref|ZP_12753562.1| S1 RNA binding domain protein [Streptococcus pneumoniae 6963-05]
gi|418118846|ref|ZP_12755803.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA18523]
gi|418120930|ref|ZP_12757876.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44194]
gi|418123126|ref|ZP_12760061.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44378]
gi|418125471|ref|ZP_12762385.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44511]
gi|418127713|ref|ZP_12764609.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP170]
gi|418134916|ref|ZP_12771773.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA11426]
gi|418136887|ref|ZP_12773730.1| hypothetical protein SPAR24_0784 [Streptococcus pneumoniae GA11663]
gi|418141452|ref|ZP_12778265.1| hypothetical protein SPAR30_0833 [Streptococcus pneumoniae GA13455]
gi|418148285|ref|ZP_12785050.1| hypothetical protein SPAR34_0775 [Streptococcus pneumoniae GA13856]
gi|418150328|ref|ZP_12787080.1| hypothetical protein SPAR37_0734 [Streptococcus pneumoniae GA14798]
gi|418152594|ref|ZP_12789334.1| hypothetical protein SPAR38_0833 [Streptococcus pneumoniae GA16121]
gi|418157680|ref|ZP_12794396.1| hypothetical protein SPAR41_1459 [Streptococcus pneumoniae GA16833]
gi|418164194|ref|ZP_12800868.1| hypothetical protein SPAR45_0831 [Streptococcus pneumoniae GA17371]
gi|418166473|ref|ZP_12803129.1| hypothetical protein SPAR52_0893 [Streptococcus pneumoniae GA17971]
gi|418171540|ref|ZP_12808164.1| hypothetical protein SPAR58_1320 [Streptococcus pneumoniae GA19451]
gi|418173229|ref|ZP_12809843.1| hypothetical protein SPAR67_0832 [Streptococcus pneumoniae GA41277]
gi|418177886|ref|ZP_12814470.1| hypothetical protein SPAR73_0814 [Streptococcus pneumoniae GA41565]
gi|418183121|ref|ZP_12819679.1| hypothetical protein SPAR78_1527 [Streptococcus pneumoniae GA43380]
gi|418184683|ref|ZP_12821230.1| hypothetical protein SPAR91_0873 [Streptococcus pneumoniae GA47283]
gi|418191408|ref|ZP_12827912.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47388]
gi|418193490|ref|ZP_12829983.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47439]
gi|418195897|ref|ZP_12832376.1| hypothetical protein SPAR103_1091 [Streptococcus pneumoniae
GA47688]
gi|418197686|ref|ZP_12834150.1| hypothetical protein SPAR106_0774 [Streptococcus pneumoniae
GA47778]
gi|418214031|ref|ZP_12840766.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA54644]
gi|418223605|ref|ZP_12850245.1| S1 RNA binding domain protein [Streptococcus pneumoniae 5185-06]
gi|418227445|ref|ZP_12854064.1| S1 RNA binding domain protein [Streptococcus pneumoniae 3063-00]
gi|418231924|ref|ZP_12858512.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA07228]
gi|418234052|ref|ZP_12860632.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA08780]
gi|418236367|ref|ZP_12862935.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA19690]
gi|419424888|ref|ZP_13965087.1| S1 RNA binding domain protein [Streptococcus pneumoniae 7533-05]
gi|419427469|ref|ZP_13967650.1| S1 RNA binding domain protein [Streptococcus pneumoniae 5652-06]
gi|419429606|ref|ZP_13969770.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA11856]
gi|419431257|ref|ZP_13971403.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP05]
gi|419433683|ref|ZP_13973801.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40183]
gi|419435731|ref|ZP_13975825.1| S1 RNA binding domain protein [Streptococcus pneumoniae 8190-05]
gi|419437810|ref|ZP_13977881.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13499]
gi|419440074|ref|ZP_13980128.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40410]
gi|419442344|ref|ZP_13982375.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13224]
gi|419444916|ref|ZP_13984931.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA19923]
gi|419447060|ref|ZP_13987065.1| S1 RNA binding domain protein [Streptococcus pneumoniae 7879-04]
gi|419448503|ref|ZP_13988500.1| S1 RNA binding domain protein [Streptococcus pneumoniae 4075-00]
gi|419451204|ref|ZP_13991190.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP02]
gi|419464163|ref|ZP_14004056.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04175]
gi|419468728|ref|ZP_14008599.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA06083]
gi|419470814|ref|ZP_14010673.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA07914]
gi|419472917|ref|ZP_14012768.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13430]
gi|419475252|ref|ZP_14015093.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA14688]
gi|419479688|ref|ZP_14019496.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA19101]
gi|419484275|ref|ZP_14024051.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA43257]
gi|419486407|ref|ZP_14026173.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44128]
gi|419490780|ref|ZP_14030520.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47179]
gi|419493002|ref|ZP_14032729.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47210]
gi|419497039|ref|ZP_14036750.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47522]
gi|419499382|ref|ZP_14039081.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47597]
gi|419501594|ref|ZP_14041280.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47628]
gi|419503663|ref|ZP_14043334.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47760]
gi|419507924|ref|ZP_14047578.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49542]
gi|419510488|ref|ZP_14050132.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP141]
gi|419518657|ref|ZP_14058264.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA08825]
gi|419527742|ref|ZP_14067285.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17719]
gi|419530544|ref|ZP_14070071.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40028]
gi|419532088|ref|ZP_14071606.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47794]
gi|419534307|ref|ZP_14073813.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17457]
gi|421208685|ref|ZP_15665707.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070005]
gi|421210961|ref|ZP_15667948.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070035]
gi|421213047|ref|ZP_15670008.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070108]
gi|421215093|ref|ZP_15672023.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070109]
gi|421224722|ref|ZP_15681466.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070768]
gi|421227007|ref|ZP_15683718.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2072047]
gi|421231620|ref|ZP_15688267.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2080076]
gi|421236012|ref|ZP_15692613.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2071004]
gi|421238488|ref|ZP_15695057.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2071247]
gi|421240421|ref|ZP_15696968.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2080913]
gi|421244681|ref|ZP_15701184.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2081685]
gi|421249157|ref|ZP_15705620.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2082239]
gi|421265885|ref|ZP_15716768.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR27]
gi|421274762|ref|ZP_15725594.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA52612]
gi|421278624|ref|ZP_15729434.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17301]
gi|421280844|ref|ZP_15731643.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA04672]
gi|421287581|ref|ZP_15738346.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA58771]
gi|421289499|ref|ZP_15740251.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA54354]
gi|421294023|ref|ZP_15744746.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA56113]
gi|421298333|ref|ZP_15749021.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA60080]
gi|421300711|ref|ZP_15751382.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA19998]
gi|421304819|ref|ZP_15755475.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA62331]
gi|421307041|ref|ZP_15757687.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA60132]
gi|421309292|ref|ZP_15759920.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA62681]
gi|421314027|ref|ZP_15764617.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA47562]
gi|444382871|ref|ZP_21181070.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS8106]
gi|444385702|ref|ZP_21183773.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS8203]
gi|444390015|ref|ZP_21187930.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS70012]
gi|444391538|ref|ZP_21189358.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS81218]
gi|444394355|ref|ZP_21191908.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0002]
gi|444397309|ref|ZP_21194792.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0006]
gi|444399988|ref|ZP_21197414.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0007]
gi|444403390|ref|ZP_21200489.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0008]
gi|444406383|ref|ZP_21203139.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0009]
gi|444408523|ref|ZP_21205158.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0010]
gi|444411124|ref|ZP_21207593.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0076]
gi|444411794|ref|ZP_21208120.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0153]
gi|444416214|ref|ZP_21212406.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0199]
gi|444416923|ref|ZP_21212991.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0360]
gi|444421132|ref|ZP_21216885.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0427]
gi|444423167|ref|ZP_21218790.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0446]
gi|81446278|sp|Q8CWR9.1|RS1_STRR6 RecName: Full=30S Ribosomal protein S1
gi|15458359|gb|AAK99568.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae R6]
gi|116076101|gb|ABJ53821.1| ribosomal protein S1 [Streptococcus pneumoniae D39]
gi|147756762|gb|EDK63802.1| ribosomal protein S1 [Streptococcus pneumoniae SP11-BS70]
gi|147761232|gb|EDK68199.1| ribosomal protein S1 [Streptococcus pneumoniae SP18-BS74]
gi|147922983|gb|EDK74098.1| ribosomal protein S1 [Streptococcus pneumoniae SP3-BS71]
gi|147925962|gb|EDK77036.1| ribosomal protein S1 [Streptococcus pneumoniae SP6-BS73]
gi|147927754|gb|EDK78777.1| ribosomal protein S1 [Streptococcus pneumoniae SP9-BS68]
gi|147930190|gb|EDK81176.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP23-BS72]
gi|168995154|gb|ACA35766.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
Hungary19A-6]
gi|182629110|gb|ACB90058.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CGSP14]
gi|183571017|gb|EDT91545.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC1087-00]
gi|183571355|gb|EDT91883.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
SP195]
gi|183574635|gb|EDT95163.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC0288-04]
gi|183576994|gb|EDT97522.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC3059-06]
gi|194357074|gb|ACF55522.1| 30S ribosomal protein S1 [Streptococcus pneumoniae G54]
gi|220674103|emb|CAR68621.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae ATCC
700669]
gi|225721143|gb|ACO16997.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
70585]
gi|225723388|gb|ACO19241.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
JJA]
gi|225725584|gb|ACO21436.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
P1031]
gi|225728251|gb|ACO24102.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238726|gb|ADI69857.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TCH8431/19A]
gi|301793998|emb|CBW36396.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV104]
gi|301799856|emb|CBW32430.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae OXC141]
gi|306408996|gb|ADM84423.1| hypothetical protein SPAP_0832 [Streptococcus pneumoniae AP200]
gi|327390213|gb|EGE88556.1| hypothetical protein SPAR5_0822 [Streptococcus pneumoniae GA04375]
gi|332073191|gb|EGI83670.1| 30S ribosomal protein S1 [Streptococcus pneumoniae GA17570]
gi|332204867|gb|EGJ18932.1| hypothetical protein SPAR120_0834 [Streptococcus pneumoniae
GA47901]
gi|353747541|gb|EHD28197.1| S1 RNA binding domain protein [Streptococcus pneumoniae 4027-06]
gi|353753916|gb|EHD34532.1| S1 RNA binding domain protein [Streptococcus pneumoniae 6735-05]
gi|353756701|gb|EHD37300.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44288]
gi|353758629|gb|EHD39217.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47281]
gi|353761940|gb|EHD42503.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA43265]
gi|353765569|gb|EHD46111.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49138]
gi|353769589|gb|EHD50105.1| S1 RNA binding domain protein [Streptococcus pneumoniae 6901-05]
gi|353770951|gb|EHD51462.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA16531]
gi|353772629|gb|EHD53134.1| S1 RNA binding domain protein [Streptococcus pneumoniae 7286-06]
gi|353776743|gb|EHD57218.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP070]
gi|353779343|gb|EHD59809.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44500]
gi|353787649|gb|EHD68051.1| S1 RNA binding domain protein [Streptococcus pneumoniae 5787-06]
gi|353790426|gb|EHD70809.1| S1 RNA binding domain protein [Streptococcus pneumoniae 6963-05]
gi|353790798|gb|EHD71179.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA18523]
gi|353793757|gb|EHD74116.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44194]
gi|353798599|gb|EHD78929.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44378]
gi|353798815|gb|EHD79139.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44511]
gi|353800174|gb|EHD80488.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP170]
gi|353805703|gb|EHD85977.1| hypothetical protein SPAR30_0833 [Streptococcus pneumoniae GA13455]
gi|353812960|gb|EHD93193.1| hypothetical protein SPAR34_0775 [Streptococcus pneumoniae GA13856]
gi|353816094|gb|EHD96304.1| hypothetical protein SPAR37_0734 [Streptococcus pneumoniae GA14798]
gi|353819239|gb|EHD99437.1| hypothetical protein SPAR38_0833 [Streptococcus pneumoniae GA16121]
gi|353824128|gb|EHE04302.1| hypothetical protein SPAR41_1459 [Streptococcus pneumoniae GA16833]
gi|353830069|gb|EHE10199.1| hypothetical protein SPAR52_0893 [Streptococcus pneumoniae GA17971]
gi|353832521|gb|EHE12639.1| hypothetical protein SPAR45_0831 [Streptococcus pneumoniae GA17371]
gi|353835277|gb|EHE15371.1| hypothetical protein SPAR58_1320 [Streptococcus pneumoniae GA19451]
gi|353839928|gb|EHE20002.1| hypothetical protein SPAR67_0832 [Streptococcus pneumoniae GA41277]
gi|353844660|gb|EHE24703.1| hypothetical protein SPAR73_0814 [Streptococcus pneumoniae GA41565]
gi|353848104|gb|EHE28121.1| hypothetical protein SPAR78_1527 [Streptococcus pneumoniae GA43380]
gi|353851219|gb|EHE31215.1| hypothetical protein SPAR91_0873 [Streptococcus pneumoniae GA47283]
gi|353857309|gb|EHE37272.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47388]
gi|353860213|gb|EHE40160.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47439]
gi|353861348|gb|EHE41285.1| hypothetical protein SPAR103_1091 [Streptococcus pneumoniae
GA47688]
gi|353864437|gb|EHE44353.1| hypothetical protein SPAR106_0774 [Streptococcus pneumoniae
GA47778]
gi|353871314|gb|EHE51185.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA54644]
gi|353878403|gb|EHE58233.1| S1 RNA binding domain protein [Streptococcus pneumoniae 5185-06]
gi|353883046|gb|EHE62855.1| S1 RNA binding domain protein [Streptococcus pneumoniae 3063-00]
gi|353888230|gb|EHE68006.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA07228]
gi|353889491|gb|EHE69262.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA08780]
gi|353892599|gb|EHE72347.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA19690]
gi|353902153|gb|EHE77683.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA11426]
gi|353902815|gb|EHE78343.1| hypothetical protein SPAR24_0784 [Streptococcus pneumoniae GA11663]
gi|379138203|gb|AFC94994.1| 30S ribosomal protein S1 [Streptococcus pneumoniae ST556]
gi|379539382|gb|EHZ04561.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA04175]
gi|379539773|gb|EHZ04951.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13499]
gi|379545530|gb|EHZ10669.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA07914]
gi|379546831|gb|EHZ11969.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA06083]
gi|379549784|gb|EHZ14886.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA11856]
gi|379552424|gb|EHZ17513.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13430]
gi|379554311|gb|EHZ19391.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13224]
gi|379561590|gb|EHZ26607.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA14688]
gi|379565895|gb|EHZ30886.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17719]
gi|379567351|gb|EHZ32337.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17457]
gi|379572609|gb|EHZ37566.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA19923]
gi|379573342|gb|EHZ38298.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA19101]
gi|379573452|gb|EHZ38407.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40028]
gi|379576684|gb|EHZ41608.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40183]
gi|379580685|gb|EHZ45575.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40410]
gi|379583786|gb|EHZ48663.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA43257]
gi|379588022|gb|EHZ52868.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44128]
gi|379594359|gb|EHZ59169.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47179]
gi|379595040|gb|EHZ59849.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47210]
gi|379601553|gb|EHZ66326.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47522]
gi|379601955|gb|EHZ66727.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47628]
gi|379602436|gb|EHZ67207.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47597]
gi|379608844|gb|EHZ73589.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47794]
gi|379609261|gb|EHZ74002.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47760]
gi|379612769|gb|EHZ77486.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49542]
gi|379614600|gb|EHZ79310.1| S1 RNA binding domain protein [Streptococcus pneumoniae 7879-04]
gi|379616267|gb|EHZ80966.1| S1 RNA binding domain protein [Streptococcus pneumoniae 8190-05]
gi|379617662|gb|EHZ82342.1| S1 RNA binding domain protein [Streptococcus pneumoniae 5652-06]
gi|379620217|gb|EHZ84876.1| S1 RNA binding domain protein [Streptococcus pneumoniae 7533-05]
gi|379622909|gb|EHZ87543.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP02]
gi|379623561|gb|EHZ88194.1| S1 RNA binding domain protein [Streptococcus pneumoniae 4075-00]
gi|379632501|gb|EHZ97077.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP05]
gi|379633681|gb|EHZ98250.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP141]
gi|379641636|gb|EIA06171.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA08825]
gi|381309644|gb|EIC50477.1| 40S ribosomal protein S1 [Streptococcus pneumoniae SV36]
gi|381317559|gb|EIC58284.1| 40S ribosomal protein S1 [Streptococcus pneumoniae SV35]
gi|381318470|gb|EIC59193.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 459-5]
gi|395574195|gb|EJG34776.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070035]
gi|395575641|gb|EJG36206.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070005]
gi|395580634|gb|EJG41115.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070108]
gi|395581812|gb|EJG42279.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070109]
gi|395590510|gb|EJG50814.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070768]
gi|395596719|gb|EJG56935.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2080076]
gi|395596776|gb|EJG56990.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2072047]
gi|395603075|gb|EJG63216.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2071247]
gi|395604931|gb|EJG65063.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2071004]
gi|395609003|gb|EJG69093.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2080913]
gi|395610339|gb|EJG70418.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2081685]
gi|395615786|gb|EJG75802.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2082239]
gi|395868621|gb|EJG79738.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR27]
gi|395875490|gb|EJG86571.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA52612]
gi|395881996|gb|EJG93044.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA17301]
gi|395884201|gb|EJG95243.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA04672]
gi|395888193|gb|EJG99205.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA58771]
gi|395890759|gb|EJH01765.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA54354]
gi|395894313|gb|EJH05293.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA56113]
gi|395900135|gb|EJH11074.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA19998]
gi|395902289|gb|EJH13222.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA60080]
gi|395905481|gb|EJH16386.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA62331]
gi|395909004|gb|EJH19881.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA60132]
gi|395911404|gb|EJH22271.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA62681]
gi|395914527|gb|EJH25371.1| 30S Ribosomal protein S1 [Streptococcus pneumoniae GA47562]
gi|406369247|gb|AFS42937.1| 30S ribosomal protein S1 [Streptococcus pneumoniae gamPNI0373]
gi|429317696|emb|CCP37490.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae
SPN034156]
gi|429319238|emb|CCP32483.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae
SPN034183]
gi|429321053|emb|CCP34457.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae
SPN994039]
gi|429322873|emb|CCP30498.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae
SPN994038]
gi|444249380|gb|ELU55871.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS8203]
gi|444251240|gb|ELU57712.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS8106]
gi|444256478|gb|ELU62816.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS70012]
gi|444259966|gb|ELU66274.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0006]
gi|444261422|gb|ELU67726.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0002]
gi|444264538|gb|ELU70607.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0008]
gi|444265372|gb|ELU71384.1| putative ribosomal protein S1 [Streptococcus pneumoniae PCS81218]
gi|444267589|gb|ELU73486.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0007]
gi|444268385|gb|ELU74250.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0009]
gi|444269727|gb|ELU75530.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0010]
gi|444275126|gb|ELU80753.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0153]
gi|444275754|gb|ELU81366.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0076]
gi|444277906|gb|ELU83396.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0199]
gi|444283120|gb|ELU88328.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0427]
gi|444284861|gb|ELU89969.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0360]
gi|444287478|gb|ELU92404.1| putative ribosomal protein S1 [Streptococcus pneumoniae PNI0446]
Length = 400
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|78778703|ref|YP_396815.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9312]
gi|78712202|gb|ABB49379.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 366
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 74/127 (58%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S + L G + +K ++ +EE +LV S + A+ K +R+ V ++ VG + Y
Sbjct: 203 SARRVKDDLEGEYLPLKFLEVDEERNRLVLSHRRALVEKKMNRLEVGEVVVGSVKGIKPY 262
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S + I+ ++LN D+++V +I +D E+ RI+LS
Sbjct: 263 GAFIDIG------GVSGLLHISEISHEHIETPHNVLNVSDQMKVMIIDLDSERGRISLST 316
Query: 128 KQLEEDP 134
K LE +P
Sbjct: 317 KALEPEP 323
>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815547|ref|YP_005851938.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 401
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F
Sbjct: 154 GKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSF 213
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 214 VDIGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 267
Query: 131 EEDPL 135
E P
Sbjct: 268 EPSPF 272
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + +S +N D+ G ++GAF+ +
Sbjct: 243 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
DG+ GLVHVSE+++ + D+L G +V+VKV+ ID K RI+LSIKQ++
Sbjct: 302 -ADGI---QGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVD 354
>gi|15900746|ref|NP_345350.1| 30S ribosomal protein S1 [Streptococcus pneumoniae TIGR4]
gi|111657643|ref|ZP_01408376.1| hypothetical protein SpneT_02001175 [Streptococcus pneumoniae
TIGR4]
gi|149004073|ref|ZP_01828879.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69]
gi|168484699|ref|ZP_02709651.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC1873-00]
gi|168575518|ref|ZP_02721454.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016]
gi|237650398|ref|ZP_04524650.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974]
gi|237822248|ref|ZP_04598093.1| 30S ribosomal protein S1 [Streptococcus pneumoniae CCRI 1974M2]
gi|417696019|ref|ZP_12345199.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
gi|417698277|ref|ZP_12347450.1| hypothetical protein SPAR69_0831 [Streptococcus pneumoniae GA41317]
gi|418073638|ref|ZP_12710897.1| hypothetical protein SPAR19_0783 [Streptococcus pneumoniae GA11184]
gi|418086595|ref|ZP_12723765.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47033]
gi|418091479|ref|ZP_12728623.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44452]
gi|418107250|ref|ZP_12744289.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41410]
gi|418109830|ref|ZP_12746857.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49447]
gi|418130026|ref|ZP_12766910.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA07643]
gi|418143672|ref|ZP_12780472.1| hypothetical protein SPAR31_0856 [Streptococcus pneumoniae GA13494]
gi|418146082|ref|ZP_12782864.1| hypothetical protein SPAR32_0852 [Streptococcus pneumoniae GA13637]
gi|418161906|ref|ZP_12798595.1| hypothetical protein SPAR49_0898 [Streptococcus pneumoniae GA17328]
gi|418168954|ref|ZP_12805599.1| hypothetical protein SPAR56_1046 [Streptococcus pneumoniae GA19077]
gi|418175669|ref|ZP_12812266.1| hypothetical protein SPAR71_0904 [Streptococcus pneumoniae GA41437]
gi|418186871|ref|ZP_12823400.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47360]
gi|418202133|ref|ZP_12838563.1| hypothetical protein SPAR115_0849 [Streptococcus pneumoniae
GA52306]
gi|418216310|ref|ZP_12843034.1| hypothetical protein SPAR147_0821 [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218600|ref|ZP_12845267.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP127]
gi|418220781|ref|ZP_12847437.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47751]
gi|418229598|ref|ZP_12856205.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP01]
gi|418238434|ref|ZP_12864989.1| S1 RNA binding domain protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422413|ref|ZP_13962632.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA43264]
gi|419455262|ref|ZP_13995222.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP04]
gi|419457234|ref|ZP_13997180.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02254]
gi|419459708|ref|ZP_13999641.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02270]
gi|419462017|ref|ZP_14001930.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02714]
gi|419477526|ref|ZP_14017351.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA18068]
gi|419481880|ref|ZP_14021673.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40563]
gi|419488747|ref|ZP_14028498.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44386]
gi|419495180|ref|ZP_14034898.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47461]
gi|419505798|ref|ZP_14045459.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49194]
gi|419525606|ref|ZP_14065170.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA14373]
gi|421220011|ref|ZP_15676864.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070425]
gi|421222335|ref|ZP_15679128.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070531]
gi|421233853|ref|ZP_15690475.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2061617]
gi|421242269|ref|ZP_15698796.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2081074]
gi|421247119|ref|ZP_15703606.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2082170]
gi|421270281|ref|ZP_15721138.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR48]
gi|421272506|ref|ZP_15723352.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR55]
gi|421285199|ref|ZP_15735976.1| ribosomal protein S1 [Streptococcus pneumoniae GA60190]
gi|421303084|ref|ZP_15753748.1| ribosomal protein S1 [Streptococcus pneumoniae GA17484]
gi|14972334|gb|AAK74990.1| ribosomal protein S1 [Streptococcus pneumoniae TIGR4]
gi|147757974|gb|EDK64982.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS69]
gi|172042098|gb|EDT50144.1| putative 30S ribosomal protein S1 homolog [Streptococcus pneumoniae
CDC1873-00]
gi|183578463|gb|EDT98991.1| putative ribosomal protein S1 [Streptococcus pneumoniae MLV-016]
gi|332202718|gb|EGJ16787.1| hypothetical protein SPAR69_0831 [Streptococcus pneumoniae GA41317]
gi|332204016|gb|EGJ18083.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47368]
gi|353750988|gb|EHD31623.1| hypothetical protein SPAR19_0783 [Streptococcus pneumoniae GA11184]
gi|353758856|gb|EHD39442.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47033]
gi|353765383|gb|EHD45927.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44452]
gi|353780191|gb|EHD60652.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41410]
gi|353783789|gb|EHD64215.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49447]
gi|353803318|gb|EHD83610.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA07643]
gi|353809413|gb|EHD89673.1| hypothetical protein SPAR31_0856 [Streptococcus pneumoniae GA13494]
gi|353814878|gb|EHD95100.1| hypothetical protein SPAR32_0852 [Streptococcus pneumoniae GA13637]
gi|353829026|gb|EHE09161.1| hypothetical protein SPAR49_0898 [Streptococcus pneumoniae GA17328]
gi|353835791|gb|EHE15884.1| hypothetical protein SPAR56_1046 [Streptococcus pneumoniae GA19077]
gi|353842237|gb|EHE22284.1| hypothetical protein SPAR71_0904 [Streptococcus pneumoniae GA41437]
gi|353852696|gb|EHE32682.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47360]
gi|353867936|gb|EHE47826.1| hypothetical protein SPAR115_0849 [Streptococcus pneumoniae
GA52306]
gi|353873361|gb|EHE53222.1| hypothetical protein SPAR147_0821 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353875255|gb|EHE55107.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP127]
gi|353877650|gb|EHE57493.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47751]
gi|353889784|gb|EHE69552.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP01]
gi|353894184|gb|EHE73926.1| S1 RNA binding domain protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379532720|gb|EHY97945.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02254]
gi|379532734|gb|EHY97958.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02270]
gi|379533192|gb|EHY98408.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02714]
gi|379559080|gb|EHZ24110.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA14373]
gi|379566908|gb|EHZ31895.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA18068]
gi|379580754|gb|EHZ45643.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA40563]
gi|379588302|gb|EHZ53146.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA44386]
gi|379589744|gb|EHZ54583.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA43264]
gi|379595262|gb|EHZ60070.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47461]
gi|379607712|gb|EHZ72458.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA49194]
gi|379629719|gb|EHZ94313.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP04]
gi|395588869|gb|EJG49192.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070531]
gi|395589182|gb|EJG49503.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2070425]
gi|395602750|gb|EJG62892.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2061617]
gi|395611602|gb|EJG71670.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2081074]
gi|395614755|gb|EJG74773.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2082170]
gi|395870933|gb|EJG82046.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR48]
gi|395876751|gb|EJG87824.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR55]
gi|395887178|gb|EJG98193.1| ribosomal protein S1 [Streptococcus pneumoniae GA60190]
gi|395901706|gb|EJH12642.1| ribosomal protein S1 [Streptococcus pneumoniae GA17484]
Length = 400
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAF+ L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFVDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|418189086|ref|ZP_12825601.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47373]
gi|421206305|ref|ZP_15663367.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2090008]
gi|421229501|ref|ZP_15686176.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2061376]
gi|421291731|ref|ZP_15742469.1| ribosomal protein S1 [Streptococcus pneumoniae GA56348]
gi|421311601|ref|ZP_15762208.1| ribosomal protein S1 [Streptococcus pneumoniae GA58981]
gi|353856228|gb|EHE36197.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47373]
gi|395577073|gb|EJG37626.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2090008]
gi|395596835|gb|EJG57045.1| 40S ribosomal protein S1 [Streptococcus pneumoniae 2061376]
gi|395893948|gb|EJH04929.1| ribosomal protein S1 [Streptococcus pneumoniae GA56348]
gi|395912179|gb|EJH23042.1| ribosomal protein S1 [Streptococcus pneumoniae GA58981]
Length = 400
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAF+ L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFVDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GL 170
G+
Sbjct: 301 GI 302
>gi|333370713|ref|ZP_08462697.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
Length = 391
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 32/166 (19%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF-----------VGR--DYGA 69
G +S+KVI+ + KL+ S K AV ++ + + E + V R D+GA
Sbjct: 157 GRKLSLKVIEIDPVKNKLILSRK-AVLDEEADQRKQETLAGLQPGQVMEGTVQRLTDFGA 215
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ + DGL VHVSE++W+ ++ ++L+EGD+V+VKV+K+D++ RI+LSIK+
Sbjct: 216 FVDIGGVDGL------VHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQNERISLSIKE 269
Query: 130 LEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
+ P + E++ + G ++ + T++ L GA E
Sbjct: 270 TQPGPWEKVSEEI--KAGDIV----------TGTVKRLVSFGAFVE 303
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ +++ +++ S K+ W K S + DI G +GAF+ +
Sbjct: 246 GDQVQVKVLKVDQQNERISLSIKETQPGPWEKVSEEIKAGDIVTGTVKRLVSFGAFVEV- 304
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ GLVH+S++S I + L EG EVRVKV+ + E+ RI+LSIK
Sbjct: 305 ----YQGVEGLVHISQISRRHIATPSEELEEGQEVRVKVLDMQPEQKRISLSIK 354
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 56 VNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115
+N DI G+ H D Y G++ +SE+S + D+L+EGDEV VKVI+
Sbjct: 24 LNRGDIVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSLHVDKASDVLSEGDEVEVKVIR 83
Query: 116 IDREKSRITLSIKQLEEDPLLETLEK 141
I+ E+ ++ LS K ++ D E L++
Sbjct: 84 INDEEDKLVLSKKAVDADRAWEELQQ 109
>gi|226939798|ref|YP_002794871.1| 30S ribosomal protein S1 [Laribacter hongkongensis HLHK9]
gi|226714724|gb|ACO73862.1| RpsA [Laribacter hongkongensis HLHK9]
Length = 559
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L GDEV KV+K D+EK+R++L
Sbjct: 203 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLAVGDEVEAKVLKFDQEKNRVSL 256
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 257 GLKQLGEDP 265
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V +++ +E+ +++ K + W+ +S+ D G D+G FI L
Sbjct: 324 GDEVEVMILEIDEDRRRISLGMKQCMPNPWDDFSANYKKGDKIRGAIKSITDFGVFIGL- 382
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P G+ GLVH+S++SW + + IR+ +GDEV V+ ID +K RI++ IKQLE
Sbjct: 383 -PGGI---DGLVHLSDLSWSVAGEEAIRN-FKKGDEVEAMVLSIDTDKERISMGIKQLEG 437
Query: 133 DPL 135
DP
Sbjct: 438 DPF 440
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + KV++ ++E ++ K + W S R GR DYGAF+ +
Sbjct: 237 GDEVEAKVLKFDQEKNRVSLGLKQLGEDPWVGLSRRYPSGTRLFGRVTNLTDYGAFVEIE 296
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ +++ GDEV V +++ID ++ RI+L +KQ
Sbjct: 297 -----QGIEGLVHVSEMDW-TNKNVHPSKVVSLGDEVEVMILEIDEDRRRISLGMKQCMP 350
Query: 133 DP 134
+P
Sbjct: 351 NP 352
Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 88 VSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDG 147
SE++ D ++D R +L EG+E+ +I +DR+ + LSIK K + ++
Sbjct: 479 ASELARDRVEDARSLLKEGEEIEALIINVDRKSRSVKLSIKA-----------KDVAEEQ 527
Query: 148 SVISDSSSMSSSNSNTIEPLPGLGAIFEELL 178
I+ + +++N+ T LGA+ + L
Sbjct: 528 GAITRFQAEANANTGTTN----LGALLKAKL 554
>gi|383790707|ref|YP_005475281.1| 30S ribosomal protein S1 [Spirochaeta africana DSM 8902]
gi|383107241|gb|AFG37574.1| ribosomal protein S1 [Spirochaeta africana DSM 8902]
Length = 567
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G +++KV++ + E +K+ S KD W+ + R ++ + G+ D+GAFI +
Sbjct: 245 GQTLTLKVVRLDHENQKINLSLKDMTENPWDSFEDRYKIDQVVKGKVTKLTDFGAFIEIE 304
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GL H+SE+SW I ++LN GD+V V ++ D + +++L +KQ++ +
Sbjct: 305 -----GGIEGLAHISEMSWVKRISHPSEVLNIGDDVDVMILDYDLHEGKVSLGLKQVQPN 359
Query: 134 PLLETLEKVIP 144
P + +EK P
Sbjct: 360 PWDDMVEKYTP 370
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI L DGL +H++++SW + +D + +G + +KV+++D E +I LS
Sbjct: 212 FGAFIDLGGFDGL------LHINDMSWGHVTRPKDYVKKGQTLTLKVVRLDHENQKINLS 265
Query: 127 IKQLEEDP 134
+K + E+P
Sbjct: 266 LKDMTENP 273
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
GAFI L + +HV ++SW ++ +L EG+E+ V +ID E I +
Sbjct: 385 GAFIELE-----EGIDAFLHVDDLSWTKKYKNPGAVLTEGEEIECMVTQIDPETHNIRVG 439
Query: 127 IKQLEEDPLLETLEKVIPQDGSVIS 151
+KQLEEDP K +GS+IS
Sbjct: 440 LKQLEEDPWKSL--KTAYGEGSIIS 462
>gi|424736593|ref|ZP_18165052.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZB2]
gi|422949589|gb|EKU43963.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZB2]
Length = 378
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 19 KGLTGSIISVKVIQANEEMKKLVFSEKDAV-WNKYSSRVNV------EDIFVGR-----D 66
+G G +S K+++ ++ +L+ S + V K S + NV D+ G+
Sbjct: 140 EGYKGQTLSFKIVELDKGKNRLILSHRAVVEAEKASQKKNVINQIKAGDVLDGKVQRLAS 199
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI L DGL VH+S+VS + + D+ ++L EG +V+VKV+ +D E RI+LS
Sbjct: 200 FGAFIDLGGIDGL------VHISQVSHEHVSDVSEVLAEGQDVKVKVLSVDPENERISLS 253
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
IK+ P E+ G+++ +S +E PG+
Sbjct: 254 IKETIPGPWSNIEERA--AKGTILDGRVKRLTSFGAFVEVFPGV 295
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + E +++ S K+ + W+ R I GR +GAF+ +
Sbjct: 233 GQDVKVKVLSVDPENERISLSIKETIPGPWSNIEERAAKGTILDGRVKRLTSFGAFVEV- 291
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S+++ I + L EG EV+VKV+ ++ ++ R+ LSIK+L E+P
Sbjct: 292 FPG----VEGLVHISQIAHKHINTPHEALKEGQEVQVKVLDVNADEGRLALSIKELLENP 347
>gi|419453166|ref|ZP_13993139.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP03]
gi|379626875|gb|EHZ91491.1| S1 RNA binding domain protein [Streptococcus pneumoniae EU-NP03]
Length = 400
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GA++ L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAYVDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|422845529|ref|ZP_16892239.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 401
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F
Sbjct: 154 GKTIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSF 213
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 214 VDIGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 267
Query: 131 EEDPL 135
E P
Sbjct: 268 EPSPF 272
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + +S +N D+ G ++GAF+ +
Sbjct: 243 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
DG+ GLVHVSE+S+ + D+L G +V+VKV+ ID K RI+LSIKQ +
Sbjct: 302 -ADGI---QGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQAD 354
>gi|429740622|ref|ZP_19274304.1| 30S ribosomal protein S1 [Porphyromonas catoniae F0037]
gi|429160612|gb|EKY03070.1| 30S ribosomal protein S1 [Porphyromonas catoniae F0037]
Length = 597
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++V +++ +E K++ K W+ + + V D G+ DYGAFI + P
Sbjct: 263 LNVVILEFDEAKKRIALGLKQLQPHPWDSLDANLKVGDKVKGKVVVLADYGAFIEVA-PG 321
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GLVH+SE+SW I+ +DIL GDEV ++ +DRE+ +++L +KQL+EDP
Sbjct: 322 ----VEGLVHISEMSWTQHIRSAQDILKVGDEVEAVILSLDREERKMSLGLKQLKEDP-W 376
Query: 137 ETLEKVIP 144
E ++K P
Sbjct: 377 ENIDKRFP 384
Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
YGAFI L DGL VH++++SW + +++ + V +++ D K RI L
Sbjct: 227 YGAFIDLGGIDGL------VHITDLSWGRVSHPSEVVALDQTLNVVILEFDEAKKRIALG 280
Query: 127 IKQLEEDP 134
+KQL+ P
Sbjct: 281 LKQLQPHP 288
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ + +G+ GLVH+S++SW I+ + G + + V++ID+E R++
Sbjct: 398 NFGVFVEIE--EGI---DGLVHISDLSWTKKIKHPNEFTEVGAPLEIVVLEIDKENRRLS 452
Query: 125 LSIKQLEEDP 134
L KQ+EE+P
Sbjct: 453 LGHKQIEENP 462
>gi|347542383|ref|YP_004857019.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Candidatus
Arthromitus sp. SFB-rat-Yit]
gi|346985418|dbj|BAK81093.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 850
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 17/106 (16%)
Query: 29 KVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHV 88
K I+ NE K LV + V + R+N +GAF+ + DGL +H+
Sbjct: 679 KKIRENEIWKSLVLGD---VVDCEVKRINT--------FGAFVDVNGVDGL------LHI 721
Query: 89 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
SE+SW I + D+LN GD+++VK+I +DRE +++LS+K L++DP
Sbjct: 722 SEISWGRIDKVSDVLNIGDKIKVKIIDLDRENRKLSLSMKVLQDDP 767
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK+I + E +KL S K D W+ + + + +G+ ++GAF+ L
Sbjct: 739 GDKIKVKIIDLDRENRKLSLSMKVLQDDPWSNVDEKYPIGAVVLGKVVRFAEFGAFVELE 798
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
P + GLVH+S++S + DI D L G EV+ K+++I++E RI LSIK +E
Sbjct: 799 -P----SIDGLVHISQISHKRVNDISDFLQIGQEVKAKIVEINKENKRIELSIKVIE 850
>gi|342163534|ref|YP_004768173.1| 30S ribosomal protein S1 [Streptococcus pseudopneumoniae IS7493]
gi|383938605|ref|ZP_09991810.1| S1 RNA binding domain protein [Streptococcus pseudopneumoniae
SK674]
gi|341933416|gb|AEL10313.1| 30S ribosomal protein S1 [Streptococcus pseudopneumoniae IS7493]
gi|383714460|gb|EID70461.1| S1 RNA binding domain protein [Streptococcus pseudopneumoniae
SK674]
Length = 400
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAFI L DGL HLT E+S + + ++ G+E+ VK++ ++ E+ R++LS
Sbjct: 207 FGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLS 260
Query: 127 IKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAI 173
+K P + +E+ + + G V+ + + +E LPG+ +
Sbjct: 261 LKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLPGIDGL 305
>gi|417686303|ref|ZP_12335581.1| hypothetical protein SPAR68_0864 [Streptococcus pneumoniae GA41301]
gi|418159490|ref|ZP_12796190.1| hypothetical protein SPAR43_0821 [Streptococcus pneumoniae GA17227]
gi|419520796|ref|ZP_14060393.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA05245]
gi|332076140|gb|EGI86606.1| hypothetical protein SPAR68_0864 [Streptococcus pneumoniae GA41301]
gi|353824634|gb|EHE04807.1| hypothetical protein SPAR43_0821 [Streptococcus pneumoniae GA17227]
gi|379540699|gb|EHZ05871.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA05245]
Length = 400
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GL 170
G+
Sbjct: 301 GI 302
>gi|288799972|ref|ZP_06405431.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039]
gi|288333220|gb|EFC71699.1| ribosomal protein S1 [Prevotella sp. oral taxon 299 str. F0039]
Length = 591
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I+V ++ ++E K++ K W+ ++ + V D G+ DYGAF+ + P
Sbjct: 262 INVVILDFDDEKKRIALGLKQLTPHPWDALNTELKVGDHVKGKVVVIADYGAFVEIA-PG 320
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ ++ L+ GDEV V+ +DRE+ +++L IKQL+EDP
Sbjct: 321 ----VEGLIHVSEMSWSQHLRSAQEFLHVGDEVEAVVLTLDREERKMSLGIKQLKEDP-W 375
Query: 137 ETLEKVIP 144
ET+E P
Sbjct: 376 ETIEVKYP 383
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYG 68
G + K+++ N+E + +V S K +A + S++ I G YG
Sbjct: 168 FVGKTMEFKIVKINQEFRNVVVSHKALIEAELEAQKKEIISKLEKGQILEGTVKNITSYG 227
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
FI L DGL +H++++SW + D +++ +++ V ++ D EK RI L +K
Sbjct: 228 VFIDLGGVDGL------IHITDLSWGRVSDPHEVVALDEKINVVILDFDDEKKRIALGLK 281
Query: 129 QLEEDP 134
QL P
Sbjct: 282 QLTPHP 287
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ L +G+ GL+H+S++SW ++ + G E+ V V++ID+E R++
Sbjct: 397 NFGIFVELE--EGV---DGLIHISDLSWTKKVKHPSEFTQVGAEIDVVVLEIDKENRRLS 451
Query: 125 LSIKQLEEDP 134
L KQLE++P
Sbjct: 452 LGHKQLEDNP 461
>gi|407696797|ref|YP_006821585.1| 30S ribosomal protein S1 [Alcanivorax dieselolei B5]
gi|407254135|gb|AFT71242.1| 30S ribosomal protein S1 [Alcanivorax dieselolei B5]
Length = 559
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+ G E+ VKV+K DREK R++L
Sbjct: 204 DYGAFVDLGGIDGLLHIT------DMAWKRIKHPSEIVEVGQEIEVKVLKFDREKMRVSL 257
Query: 126 SIKQLEEDPLLETLEK 141
+KQL EDP + ++K
Sbjct: 258 GLKQLGEDPWHDIVQK 273
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V ++ +E+ +++ K + W +++ D G+
Sbjct: 313 NKNIHPSKVVEIGDEVEVMILDIDEDRRRISLGIKQCLSNPWEAFATNYQKGDRISGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW+ +D N+GDE+ V+ ID E+
Sbjct: 373 SITDFGIFIGLE-----GGIDGLVHLSDISWEEAGEDAVRNFNKGDELETVVLSIDAERE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165
RI+L IKQL +DP + + + GS++ + + T+E
Sbjct: 428 RISLGIKQLTDDPFAQYV--AANEKGSIVKGTVKAVDAKGATVE 469
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F + + GLVHVSE+ W ++I ++ GDEV V ++ ID ++ RI
Sbjct: 289 DYGCFAEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVEIGDEVEVMILDIDEDRRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ +P
Sbjct: 343 SLGIKQCLSNP 353
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
++ G + SE+S D I D +LN GDEV ++ IDR+ I +S++ ++ E ++
Sbjct: 473 NVEGYLRASEISRDRINDASQVLNVGDEVEGRITNIDRKNRSINVSVRAKDQVQDREAMD 532
Query: 141 KVIPQDGSV---ISDSSSMSSSNSN 162
+ QD + I D NSN
Sbjct: 533 NLQGQDANAPKTIGDLIKQQMENSN 557
>gi|417845713|ref|ZP_12491739.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21639]
gi|341954782|gb|EGT81255.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21639]
Length = 549
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKANPWTQFAE 359
>gi|339448321|ref|ZP_08651877.1| 30S ribosomal protein S1 [Lactobacillus fructivorans KCTC 3543]
Length = 406
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYG 68
G + VK+I+ E +L+ S E+ ++ S + DI G+ ++G
Sbjct: 159 FKGQELEVKIIEVVPEENRLILSHRAIAEAERKEARDRIMSTLKPGDIVEGKVARLTNFG 218
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL VHVSE+S++ + D+L G+EV+VKV+ +D +++RI+LSIK
Sbjct: 219 AFVDLGGIDGL------VHVSEISYEHVNKPSDVLKVGEEVKVKVLSVDPDRNRISLSIK 272
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
Q + P + EK P+ GSV+ +E PG+
Sbjct: 273 QTQPGPWSDIEEKA-PK-GSVLDGKVKRLVDFGAFVEVFPGV 312
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ + + ++ S K W+ + + G+ D+GAF+ +
Sbjct: 250 GEEVKVKVLSVDPDRNRISLSIKQTQPGPWSDIEEKAPKGSVLDGKVKRLVDFGAFVEV- 308
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVH+S++S I D+L G++V+VKV+ + E+ R+ LS+K LE+DP
Sbjct: 309 FP----GVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMKALEKDP 364
>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 401
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I VK+ + + +L+ S E++ + +S++ V D+ GR ++G+F
Sbjct: 154 GKAIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSF 213
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+SE+S+ + D+L G +V+VKVI ID ++ RI+LSIKQ
Sbjct: 214 VDIGGVDGL------VHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 267
Query: 131 EEDPL 135
E P
Sbjct: 268 EPSPF 272
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKVI + + ++ S K + + + +S +N D+ G ++GAF+ +
Sbjct: 243 GQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEV- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
DG+ GLVHVSE+S+ + D+L G +V+VKV+ ID K RI+LSIKQ +
Sbjct: 302 -ADGI---QGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQAD 354
>gi|170717701|ref|YP_001784774.1| 30S ribosomal protein S1 [Haemophilus somnus 2336]
gi|168825830|gb|ACA31201.1| ribosomal protein S1 [Haemophilus somnus 2336]
Length = 547
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 24/171 (14%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
P K +H G ++ V V++ +EE +++ K W +++ N D G+
Sbjct: 318 PSKVVH------LGDVVEVMVLEIDEERRRISLGLKQCKPNPWLQFAETHNKGDKVSGKI 371
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDRE 119
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+++D
Sbjct: 372 KSITDFGIFIGLE-----GGIDGLVHLSDISWNIPGEEAVRN-YKKGDEVEAVVLQVDSA 425
Query: 120 KSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
K RI+L IKQLEEDP + + + G+V+S + +E + G+
Sbjct: 426 KERISLGIKQLEEDPFNNFI--AVNKKGAVVSAKVVEVDAKGAKVELVSGV 474
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +I++ GDE+ VKV+K D++K+R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRVKHPGEIVSVGDEITVKVLKFDKDKTRVSL 257
Query: 126 SIKQLEEDPLLETLE 140
+KQL +DP + E
Sbjct: 258 GLKQLGQDPWVAIAE 272
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LEGVEGLVHVSEMDW-TNKNIHPSKVVHLGDVVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P L+ E
Sbjct: 343 SLGLKQCKPNPWLQFAE 359
>gi|347753863|ref|YP_004861427.1| 30S ribosomal protein S1 [Candidatus Chloracidobacterium
thermophilum B]
gi|347586381|gb|AEP10911.1| SSU ribosomal protein S1P [Candidatus Chloracidobacterium
thermophilum B]
Length = 562
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 21/147 (14%)
Query: 20 GLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR------VNVEDIFVG------RDY 67
L G ++ ++++ N++ +V S K + + ++R + E++ V DY
Sbjct: 151 ALIGREMTFRILKLNKKRNNIVLSRKVLLEEEMTARKAETLRMLDENVIVSGQVKNLTDY 210
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI L DGL +HV+++SW + D+ N GD ++VKV+K DRE+ R++L
Sbjct: 211 GAFIDLGGIDGL------LHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGY 264
Query: 128 KQLEEDPLLETLEKVIPQD---GSVIS 151
KQL DP E+ D G V+S
Sbjct: 265 KQLLPDPWDTVTERYRKNDIVKGRVVS 291
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 26/162 (16%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV++ + E +++ K + W+ + R DI GR DYGAF+ L
Sbjct: 243 GDTIQVKVLKFDRERERVSLGYKQLLPDPWDTVTERYRKNDIVKGRVVSVTDYGAFVELE 302
Query: 75 FPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE++W I+ +++ GDEV ++++D RI+L +KQ++ +
Sbjct: 303 -----EGVEGLVHVSEMTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMKQIQPN 357
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
P ++ S+ S S + L GA E
Sbjct: 358 PW------------DSVAQRYSVGSRVSGKVRNLTDFGAFVE 387
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDI 102
W+ + R +V G+ D+GAF+ + DG+ GL+HVS++SW ++ D+
Sbjct: 359 WDSVAQRYSVGSRVSGKVRNLTDFGAFVEIE--DGI---DGLIHVSDLSWTKRVKHPSDV 413
Query: 103 LNEGDEVRVKVIKIDREKSRITLSIKQLE 131
L +G V + ID R++LSIK LE
Sbjct: 414 LKKGQSVEAIITNIDTANRRLSLSIKDLE 442
>gi|373466747|ref|ZP_09558058.1| ribosomal protein S1 [Haemophilus sp. oral taxon 851 str. F0397]
gi|417841094|ref|ZP_12487200.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19501]
gi|419839972|ref|ZP_14363372.1| ribosomal protein S1 [Haemophilus haemolyticus HK386]
gi|341949994|gb|EGT76591.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19501]
gi|371760005|gb|EHO48710.1| ribosomal protein S1 [Haemophilus sp. oral taxon 851 str. F0397]
gi|386908710|gb|EIJ73397.1| ribosomal protein S1 [Haemophilus haemolyticus HK386]
Length = 549
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKANPWTQFAE 359
>gi|160872757|ref|ZP_02062889.1| ribosomal protein S1 [Rickettsiella grylli]
gi|159121556|gb|EDP46894.1| ribosomal protein S1 [Rickettsiella grylli]
Length = 522
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL +HV+++SW ++ ++LN GDE+ V V+KI+RE+ R++L
Sbjct: 204 DYGAFIDLGGIDGL------LHVTDISWKRVKQPSEVLNIGDEIEVVVLKIERERGRVSL 257
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 258 GLKQLVGDP 266
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 8/68 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRI 123
D+G FI L P ++ GLVH+S+++W+L + +R +GDE+ ++ ID E+ RI
Sbjct: 376 DFGLFIGL--PG---NIDGLVHLSDIAWNLSGEEAVRK-YKKGDELETIILSIDPERERI 429
Query: 124 TLSIKQLE 131
+L IKQL+
Sbjct: 430 SLGIKQLD 437
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V V++ E ++ K V W R V G+ DYG F+ +
Sbjct: 238 GDEIEVVVLKIERERGRVSLGLKQLVGDPWEDLVKRYPVGTRLKGKVTNVTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + I+ G E+ V V+ ID ++ RI+L IKQ + +
Sbjct: 298 -----EGVEGLVHVSEMDWTNKNINPNKIVQAGMEIEVIVLDIDSDRRRISLGIKQCKSN 352
Query: 134 P 134
P
Sbjct: 353 P 353
>gi|417843391|ref|ZP_12489466.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21127]
gi|341949870|gb|EGT76469.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M21127]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGTVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKANPWTQFAE 359
>gi|417840377|ref|ZP_12486514.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19107]
gi|341948601|gb|EGT75225.1| 30S ribosomal protein S1 [Haemophilus haemolyticus M19107]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW++ + +R+ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWNVSGEEAVRN-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELADGV 474
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKANPWTQFAE 359
>gi|339498164|ref|ZP_08659140.1| SSU ribosomal protein S1P [Leuconostoc pseudomesenteroides KCTC
3652]
gi|399515907|ref|ZP_10757540.1| SSU ribosomal protein S1p [Leuconostoc pseudomesenteroides 4882]
gi|398649341|emb|CCJ65567.1| SSU ribosomal protein S1p [Leuconostoc pseudomesenteroides 4882]
Length = 397
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G +++VK++ + E ++ S K W+K + + G +D+GAF+ +
Sbjct: 243 GEVVNVKILALDSEKGRISLSIKATQPGPWDKVAEEAPAGTVLEGTVKRVKDFGAFVEI- 301
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
FP + GLVHVS++S I++ D+L GD+V+V+V+ + + RI+LS+K LEE P
Sbjct: 302 FP----GIEGLVHVSQISHKRIENPSDVLKSGDKVKVQVLDVKPAEERISLSMKALEEKP 357
Query: 135 LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175
E ++ DGS + + +++ + LG IF+
Sbjct: 358 --EREDRGNANDGS--ASRADIAAYKQQEDDSAATLGDIFD 394
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 20/157 (12%)
Query: 26 ISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
I +VI+ + +L+ S E+ A + +++ V ++ G+ D+GAF+ L
Sbjct: 157 IKAQVIEIDASKARLILSRKAVAAQERAAQLAEAFAKLTVGEVVEGKVARLTDFGAFVDL 216
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DGL VHVSE+S D +++ D+L +G+ V VK++ +D EK RI+LSIK +
Sbjct: 217 GGVDGL------VHVSEISHDRVKNPADVLTKGEVVNVKILALDSEKGRISLSIKATQPG 270
Query: 134 PLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P + E+ P G+V+ + +E PG+
Sbjct: 271 PWDKVAEEA-PA-GTVLEGTVKRVKDFGAFVEIFPGI 305
>gi|322385171|ref|ZP_08058818.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
gi|417921709|ref|ZP_12565199.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
gi|321270795|gb|EFX53708.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
gi|342833594|gb|EGU67874.1| 30S ribosomal protein S1 [Streptococcus cristatus ATCC 51100]
Length = 400
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GDEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDALKVGQEVTVKVLEVNAAAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++NV D+ G+ +GAFI L DGL HLT L H VS + +++ GDE
Sbjct: 189 GKLNVGDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VKV+ ++ E+ R++LS+K P +K+ G V+ + + +E LP
Sbjct: 243 IEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAA--GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|229845053|ref|ZP_04465189.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
gi|229846877|ref|ZP_04466984.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
gi|229810366|gb|EEP46085.1| 30S ribosomal protein S1 [Haemophilus influenzae 7P49H1]
gi|229812025|gb|EEP47718.1| 30S ribosomal protein S1 [Haemophilus influenzae 6P18H1]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|145629272|ref|ZP_01785071.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
gi|145636918|ref|ZP_01792583.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
gi|260581139|ref|ZP_05848959.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
gi|260582648|ref|ZP_05850437.1| ribosomal protein S1 [Haemophilus influenzae NT127]
gi|319776105|ref|YP_004138593.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
gi|319896914|ref|YP_004135109.1| 30S ribosomal protein S1 [Haemophilus influenzae F3031]
gi|378697445|ref|YP_005179403.1| 30S ribosomal protein S1 [Haemophilus influenzae 10810]
gi|144978775|gb|EDJ88498.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.1-21]
gi|145269999|gb|EDK09937.1| 30S ribosomal protein S1 [Haemophilus influenzae PittHH]
gi|260092167|gb|EEW76110.1| ribosomal protein S1 [Haemophilus influenzae RdAW]
gi|260094320|gb|EEW78219.1| ribosomal protein S1 [Haemophilus influenzae NT127]
gi|301169961|emb|CBW29565.1| 30S ribosomal subunit protein S1 [Haemophilus influenzae 10810]
gi|317432418|emb|CBY80773.1| 30S ribosomal protein S1 [Haemophilus influenzae F3031]
gi|317450696|emb|CBY86916.1| 30S ribosomal protein S1 [Haemophilus influenzae F3047]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|384084577|ref|ZP_09995752.1| 30S ribosomal protein S1 [Acidithiobacillus thiooxidans ATCC 19377]
Length = 570
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV--EDIFVG----------RDYG 68
L G + +K+I+ + + +V S + V + S+ V E I G DYG
Sbjct: 156 LEGKDLEMKIIKLDRKRNNVVVSRRAVVEQEQSAERGVLLESIQEGAILDGVVKNLTDYG 215
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL H+T ++ W ++ +++ G EVRV V+K DRE+ RI+L +K
Sbjct: 216 AFIDLGGIDGLLHIT------DMGWRRVKHPSEVVTVGGEVRVLVLKFDRERGRISLGMK 269
Query: 129 QLEEDP 134
QL EDP
Sbjct: 270 QLGEDP 275
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 25/155 (16%)
Query: 10 PQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR- 65
P K++H + V ++ +EE +++ K + W+ ++ D G+
Sbjct: 327 PAKALH------VSQEVEVMILDIDEERRRISLGIKQCLPNPWDDFAQNFQKGDRVSGQI 380
Query: 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDRE 119
D+G F+ L DG + GL+H+S+++WD + +RD +GD + V+ ID E
Sbjct: 381 KSITDFGVFVGL---DG--GIDGLIHLSDLAWDRTGEEAVRD-FKKGDTLEAVVLSIDPE 434
Query: 120 KSRITLSIKQLEEDPLLETL---EKVIPQDGSVIS 151
+ RI+L IKQ+E DP ++ + EK +G VIS
Sbjct: 435 RERISLGIKQMETDPFIQFVVANEKGALVEGEVIS 469
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRIT 124
DYGAF+ + + GLVHVSE+ W + L+ EV V ++ ID E+ RI+
Sbjct: 298 DYGAFVEIE-----EGVEGLVHVSEIDWTNKNINPAKALHVSQEVEVMILDIDEERRRIS 352
Query: 125 LSIKQLEEDP 134
L IKQ +P
Sbjct: 353 LGIKQCLPNP 362
>gi|374850849|dbj|BAL53827.1| 30S ribosomal protein S1 [uncultured planctomycete]
Length = 605
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L DGL H+T ++SW +QD RD+++EG E+ V VI +DREK RI +
Sbjct: 230 DFGAFVDLGGMDGLLHIT------DMSWGRVQDPRDVVHEGQELEVYVISVDREKQRIAV 283
Query: 126 SIKQLEEDPLLETLEK 141
+KQ P EK
Sbjct: 284 GLKQKTPSPWANIEEK 299
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 21/164 (12%)
Query: 7 CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFV 63
++P+ +HE G + V VI + E +++ K W + V V
Sbjct: 254 VQDPRDVVHE------GQELEVYVISVDREKQRIAVGLKQKTPSPWANIEEKYPVGSTHV 307
Query: 64 GR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKID 117
G YGAF+ L + GLVH+SE+SW + +I++ GD+V V V+ I+
Sbjct: 308 GEVVNIMPYGAFVRLE-----PGVEGLVHISEMSWTRRVNHPNEIVSIGDKVEVMVLGIN 362
Query: 118 REKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+EK I+L +KQ + +P EK P+ V S+++ +
Sbjct: 363 KEKEEISLGMKQCQPNPWDLVPEK-YPEGAVVTGTVRSLTNYGA 405
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
+YGAF+ L + G +H++++SW + ++L +GD+V+ V+ +D E+ RI
Sbjct: 402 NYGAFVELE-----EGIDGFLHLNDISWVKKVTHPSEVLQKGDKVKCVVLGVDYERKRIQ 456
Query: 125 LSIKQLEEDPLLETLEKVIP---QDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174
L +KQL DP E IP Q G++I + +S +E PGL +
Sbjct: 457 LGMKQLASDP----WETDIPNRYQPGTIIVGRVTKLTSFGAFVELEPGLEGLL 505
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSS----RVNVEDIFVGR-----DYGAFIHL 73
G + V+ + E K++ K + + + R I VGR +GAF+ L
Sbjct: 438 GDKVKCVVLGVDYERKRIQLGMKQLASDPWETDIPNRYQPGTIIVGRVTKLTSFGAFVEL 497
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
L GL+HV+E++ ++ +++ GD V VKV+ +D + +I LS K+ +
Sbjct: 498 E-----PGLEGLLHVTELADHRVESPEEVVRVGDIVEVKVLSVDPTERKIRLSRKRAQ 550
>gi|339640301|ref|ZP_08661745.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339453570|gb|EGP66185.1| 30S ribosomal protein S1 [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 402
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VKV+ NEE ++ S K W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKVLDLNEEEGRVSLSLKATTPGPWDGVEQKLAAGDVIEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D L G EV VKV++++ R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDALKAGQEVTVKVLEVNPANERVSLSIKALEERP 354
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G K+ + + + + + S +D V + + ++NV D+ G+ +G
Sbjct: 149 FVGQEFDAKIKEVDPKENRFILSRRDVVEAETAAARAEVFGKLNVGDVVTGKVARITSFG 208
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DGL HLT E+S + + ++ G+E+ VKV+ ++ E+ R++LS+K
Sbjct: 209 AFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEEIEVKVLDLNEEEGRVSLSLK 262
Query: 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAI 173
P +K+ G VI + + +E LPG+ +
Sbjct: 263 ATTPGPWDGVEQKLAA--GDVIEGTVKRLTDFGAFVEVLPGIDGL 305
>gi|148827070|ref|YP_001291823.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
gi|148718312|gb|ABQ99439.1| 30S ribosomal protein S1 [Haemophilus influenzae PittGG]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|145639201|ref|ZP_01794808.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
gi|145271763|gb|EDK11673.1| 30S ribosomal protein S1 [Haemophilus influenzae PittII]
gi|309750777|gb|ADO80761.1| 30S ribosomal protein S1 [Haemophilus influenzae R2866]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|145633320|ref|ZP_01789051.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
gi|144986166|gb|EDJ92756.1| 30S ribosomal protein S1 [Haemophilus influenzae 3655]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKTNPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKTNP 353
>gi|386265722|ref|YP_005829214.1| 30S ribosomal protein S1 [Haemophilus influenzae R2846]
gi|309972958|gb|ADO96159.1| 30S ribosomal protein S1 [Haemophilus influenzae R2846]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V V++ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 325 GDTVEVMVLEIDEERRRISLGLKQCKANPWTQFAETHNKGDKVTGKIKSITDFGIFIGLE 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+S++SW + + +R +GDEV V+ +D K RI+L IKQLEE
Sbjct: 385 GG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVKERISLGIKQLEE 438
Query: 133 DPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
DP + I + G+V+S + + + +E G+
Sbjct: 439 DPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I ++N GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVNLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDPLLETLE 140
+L +KQ + +P + E
Sbjct: 343 SLGLKQCKANPWTQFAE 359
>gi|329123269|ref|ZP_08251837.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
gi|327471478|gb|EGF16926.1| 30S ribosomal protein S1 [Haemophilus aegyptius ATCC 11116]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + +++ +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEVVRQYKKGDEVSAVVLAVDAVKE 427
Query: 122 RITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 428 RISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|259503206|ref|ZP_05746108.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
gi|259168863|gb|EEW53358.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
Length = 413
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 13/138 (9%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K++V +E + K + + D+ G+ ++GAF+ L DGL VHVSE+S
Sbjct: 181 KEIVKAEHEQAAEKIFAELQAGDVVEGKVARMTNFGAFVDLGGVDGL------VHVSEIS 234
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
+D + D+L+ G +V+VKV+ +D ++ RI+LSIKQ P + +E+ P GS ++
Sbjct: 235 YDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGP-WDDIEEKAPA-GSTLTG 292
Query: 153 SSSMSSSNSNTIEPLPGL 170
+ +S +E PG+
Sbjct: 293 TVKRLTSFGAFVEVFPGV 310
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G + VKV+ + + +++ S K + W+ + G +GAF+ +
Sbjct: 247 AGQDVKVKVLSVDPDRERISLSIKQTLPGPWDDIEEKAPAGSTLTGTVKRLTSFGAFVEV 306
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
FP + GLVH+S++S I D+L G EV+VKV+ +D E+ R+ LS+K LEE
Sbjct: 307 -FP----GVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKALEER 361
Query: 134 P 134
P
Sbjct: 362 P 362
>gi|145634451|ref|ZP_01790161.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
gi|145641111|ref|ZP_01796692.1| 30S ribosomal protein S1 [Haemophilus influenzae R3021]
gi|145268431|gb|EDK08425.1| 30S ribosomal protein S1 [Haemophilus influenzae PittAA]
gi|145274272|gb|EDK14137.1| 30S ribosomal protein S1 [Haemophilus influenzae 22.4-21]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|21702576|gb|AAM75973.1|AF481102_9 ribosomal protein S1 [Candidatus Tremblaya princeps]
Length = 518
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L L GL+H++++SW I+ +L+ GD + VKV+K DR K+R++L
Sbjct: 204 DYGAFIDL------GGLDGLLHITDISWRRIRHPSQVLSVGDRITVKVLKFDRTKTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 258 GLKQLHPDP 266
>gi|68250248|ref|YP_249360.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
gi|68058447|gb|AAX88700.1| 30S ribosomal protein S1 [Haemophilus influenzae 86-028NP]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|392391795|ref|YP_006428397.1| RNA-binding protein [Desulfitobacterium dehalogenans ATCC 51507]
gi|390522873|gb|AFL98603.1| putative RNA-binding protein with ribosomal protein S1 domain
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 128
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 7/88 (7%)
Query: 58 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
VE + G ++GAF+ L P+ +TGLVH+SEV+ ++D+RD L E D V+VKVI +
Sbjct: 9 VEGVVTGITNFGAFVEL--PE---KVTGLVHISEVADAYVKDVRDYLKEQDRVKVKVIHV 63
Query: 117 DREKSRITLSIKQLEEDPLLETLEKVIP 144
D EK +I LSIKQ P T E+ P
Sbjct: 64 D-EKGKIGLSIKQANPSPRNTTRERRQP 90
>gi|157364502|ref|YP_001471269.1| RNA-binding S1 domain-containing protein [Thermotoga lettingae TMO]
gi|157315106|gb|ABV34205.1| RNA binding S1 domain protein [Thermotoga lettingae TMO]
Length = 539
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 9/126 (7%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG---RDYGAFIHLRFP 76
G I+ +VI+ + E ++ S K A W + + N D+ G R A + +
Sbjct: 322 GQIVQAEVIEIDPEKHRIALSYKKAKGDPWEEVVQKYNEGDVVSGKIVRILPAGVIVELE 381
Query: 77 DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
DG+ +G V SE+SW+ ++D D+ E D + VK++ ID++K R+ LS+KQL DP
Sbjct: 382 DGV---SGFVPKSELSWNKVKDPTDLFKEKDRLNVKILSIDKQKRRMRLSVKQLTPDPWD 438
Query: 137 ETLEKV 142
E + K+
Sbjct: 439 EVVTKL 444
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I VK+I+ N + S K W K S R +V + G +G F++L P
Sbjct: 238 IKVKIIEINPARSSITVSLKALEPDPWLKVSERYSVGTVVQGTVKSIMPFGIFLNLE-PG 296
Query: 78 GLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
L GL+H+SEV W + D+ G V+ +VI+ID EK RI LS K+ + DP
Sbjct: 297 ----LDGLIHISEVFWTSKKADLHKYFKIGQIVQAEVIEIDPEKHRIALSYKKAKGDPWE 352
Query: 137 ETLEKVIPQDGSVIS 151
E ++K +G V+S
Sbjct: 353 EVVQKY--NEGDVVS 365
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 89 SEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
SE+S D DIL + D+++VK+I+I+ +S IT+S+K LE DP L+ E+
Sbjct: 218 SEMSHDPSVSPDDILKKNDQIKVKIIEINPARSSITVSLKALEPDPWLKVSER 270
>gi|406960354|gb|EKD87440.1| 30S ribosomal protein S1 [uncultured bacterium]
Length = 374
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 15/150 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK----DAVWNKYSSRVN-------VEDIFVGR-DYGA 69
+G I VKV++ +E +LVFS++ +A ++ ++ VE G +GA
Sbjct: 165 SGRRIQVKVVEVEKETNRLVFSQRAMSEEAALSRQKELIDLIKVGEAVEATITGVVPFGA 224
Query: 70 FIHLRFP--DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
F D + + GL+H+SE++W+ + D L GD ++VK+I +D ++TLS+
Sbjct: 225 FAKFTVTKDDKKHDVEGLIHISEIAWEKVDDPGQYLKVGDSLKVKIIGVDEMSGKLTLSL 284
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
KQL DP E + + +DG V S +S
Sbjct: 285 KQLLPDP-WEHVTDMFEKDGEVKGTVSRVS 313
>gi|224006742|ref|XP_002292331.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
Length = 287
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ N+E KLV S + AV + + ++ D+ G + YGAF+ +
Sbjct: 151 LVGQTLPLKFLEVNQEDNKLVVSNRRAVVEEQMAELSRGDVIDGIVKALKPYGAFVEVG- 209
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+S++S D I D+ +L G +++ +I D+ RI LS K LE +P
Sbjct: 210 -----GMSGLLHISQISMDRITDLEQVLQPGQKIKCMIIDHDKVNGRIALSTKTLEPEP 263
>gi|16273139|ref|NP_439376.1| 30S ribosomal protein S1 [Haemophilus influenzae Rd KW20]
gi|2500383|sp|Q48082.1|RS1_HAEIN RecName: Full=30S ribosomal protein S1
gi|1574150|gb|AAC22873.1| ribosomal protein S1 (rpS1) [Haemophilus influenzae Rd KW20]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>gi|406833525|ref|ZP_11093119.1| RNA binding S1 domain-containing protein [Schlesneria paludicola
DSM 18645]
Length = 540
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVG-----RDYG 68
L G ++V++ + N + LV S E+ + + +V V + G +DYG
Sbjct: 291 LVGQKLTVQITELNPAKRNLVVSRRAVMIAERKELAGAFWEKVEVGQQYSGTVKTIKDYG 350
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AFI L DG +H+ E+SW ++ ++L EG + V V+ +DREK +I L ++
Sbjct: 351 AFIDLGGADGF------LHIGEMSWTRVKHPSEVLQEGQQCDVVVLSLDREKQKIGLGMR 404
Query: 129 QLEEDP 134
QL +P
Sbjct: 405 QLAHNP 410
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR----------DYGAFIH 72
G V V+ + E +K+ + N + S VN E VG+ D+GAF+
Sbjct: 382 GQQCDVVVLSLDREKQKIGLGMRQLAHNPWGS-VN-ETYAVGKEVSGKVTRTTDFGAFVE 439
Query: 73 LRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
L + GL+H+SE+ I+ + D++N G E++ +V+++ ++ RI+LS+K L++
Sbjct: 440 LE-----PGVEGLIHISEIDHQRIRKVTDVVNVGQEIQAQVLEVAPDRQRISLSMKALKQ 494
Query: 133 DPLLETLEKVIPQDG 147
P E + P G
Sbjct: 495 KPEKPKDEDLAPGKG 509
>gi|358638543|dbj|BAL25840.1| 30S ribosomal protein S1 [Azoarcus sp. KH32C]
Length = 568
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L+ GDE+ KV+K D+EK+R++L
Sbjct: 213 DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGDEIEAKVLKFDQEKNRVSL 266
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 267 GLKQLGEDP 275
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V +++ +E+ +++ K + W+ ++ D G+
Sbjct: 322 NKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIK 381
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW D ++ +GDEV V+ ID E+
Sbjct: 382 SITDFGVFIGL---DG--GIDGLVHLSDLSWSDSGEEAVRRFKKGDEVEAVVLAIDVERE 436
Query: 122 RITLSIKQLEEDPL 135
RI+L +KQLE DP
Sbjct: 437 RISLGVKQLEGDPF 450
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI
Sbjct: 298 DYGAFVEVE-----QGIEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRI 351
Query: 124 TLSIKQLEEDP 134
+L +KQ +P
Sbjct: 352 SLGMKQCMSNP 362
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE + + D+ +L EGDEV + +I +DR+ I LSI+ ++ + ++K+
Sbjct: 485 GYLRASEAAAHRVDDLTTVLKEGDEVELMIINVDRKTRSINLSIRAKDQAEQSDAMQKLA 544
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
S + +S +N LGA+ + L E
Sbjct: 545 ---------SETAASGTTN-------LGALLKAKLNE 565
>gi|418132697|ref|ZP_12769570.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA11304]
gi|353806653|gb|EHD86926.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA11304]
Length = 400
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSIKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LSIK P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSIKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GL 170
G+
Sbjct: 301 GI 302
>gi|303254044|ref|ZP_07340161.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS455]
gi|303260750|ref|ZP_07346709.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP-BS293]
gi|303263108|ref|ZP_07349038.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS292]
gi|303265028|ref|ZP_07350942.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS397]
gi|303267475|ref|ZP_07353326.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS457]
gi|303269841|ref|ZP_07355587.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS458]
gi|307127588|ref|YP_003879619.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae 670-6B]
gi|387759097|ref|YP_006066075.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV200]
gi|417676609|ref|ZP_12326022.1| hypothetical protein SPAR148_0810 [Streptococcus pneumoniae
GA17545]
gi|418075961|ref|ZP_12713200.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47502]
gi|418112208|ref|ZP_12749210.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41538]
gi|418139169|ref|ZP_12776000.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13338]
gi|418154893|ref|ZP_12791624.1| hypothetical protein SPAR39_0853 [Streptococcus pneumoniae GA16242]
gi|418180281|ref|ZP_12816852.1| hypothetical protein SPAR74_0888 [Streptococcus pneumoniae GA41688]
gi|418200307|ref|ZP_12836752.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47976]
gi|418225282|ref|ZP_12851911.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP112]
gi|419466308|ref|ZP_14006191.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA05248]
gi|419512251|ref|ZP_14051885.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA05578]
gi|419514410|ref|ZP_14054038.1| S1 RNA binding domain protein [Streptococcus pneumoniae
England14-9]
gi|419516535|ref|ZP_14056153.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02506]
gi|419523101|ref|ZP_14062682.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13723]
gi|421268061|ref|ZP_15718933.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR95]
gi|421283044|ref|ZP_15733833.1| hypothetical protein SPAR151_0807 [Streptococcus pneumoniae
GA04216]
gi|421297458|ref|ZP_15748161.1| hypothetical protein SPAR160_2231 [Streptococcus pneumoniae
GA58581]
gi|301801686|emb|CBW34391.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae INV200]
gi|302598980|gb|EFL66009.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS455]
gi|302635761|gb|EFL66266.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP14-BS292]
gi|302638118|gb|EFL68594.1| 30S ribosomal protein S1 [Streptococcus pneumoniae SP-BS293]
gi|302640638|gb|EFL71039.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS458]
gi|302642981|gb|EFL73277.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS457]
gi|302645388|gb|EFL75621.1| 30S ribosomal protein S1 [Streptococcus pneumoniae BS397]
gi|306484650|gb|ADM91519.1| putative 30S ribosomal protein S1 [Streptococcus pneumoniae 670-6B]
gi|332077274|gb|EGI87736.1| hypothetical protein SPAR148_0810 [Streptococcus pneumoniae
GA17545]
gi|353749750|gb|EHD30393.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47502]
gi|353784074|gb|EHD64495.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA41538]
gi|353823185|gb|EHE03360.1| hypothetical protein SPAR39_0853 [Streptococcus pneumoniae GA16242]
gi|353845893|gb|EHE25931.1| hypothetical protein SPAR74_0888 [Streptococcus pneumoniae GA41688]
gi|353865354|gb|EHE45263.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA47976]
gi|353882590|gb|EHE62401.1| S1 RNA binding domain protein [Streptococcus pneumoniae NP112]
gi|353906006|gb|EHE81422.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13338]
gi|379544431|gb|EHZ09575.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA05248]
gi|379558640|gb|EHZ23673.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA13723]
gi|379636721|gb|EIA01279.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA05578]
gi|379638900|gb|EIA03445.1| S1 RNA binding domain protein [Streptococcus pneumoniae
England14-9]
gi|379640538|gb|EIA05077.1| S1 RNA binding domain protein [Streptococcus pneumoniae GA02506]
gi|395871485|gb|EJG82591.1| S1 RNA binding domain protein [Streptococcus pneumoniae SPAR95]
gi|395882910|gb|EJG93954.1| hypothetical protein SPAR151_0807 [Streptococcus pneumoniae
GA04216]
gi|395893032|gb|EJH04022.1| hypothetical protein SPAR160_2231 [Streptococcus pneumoniae
GA58581]
Length = 400
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSIKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LSIK P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSIKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GL 170
G+
Sbjct: 301 GI 302
>gi|419707474|ref|ZP_14234958.1| 30S ribosomal S1-like protein [Streptococcus salivarius PS4]
gi|383282820|gb|EIC80800.1| 30S ribosomal S1-like protein [Streptococcus salivarius PS4]
Length = 400
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ +EE ++ S K W+ ++ D+ G+ D+GAF+ +
Sbjct: 240 GDEVDVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIEGKVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G +V VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAERVSLSIKALEERP 354
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S++ V I G+ +GAFI L DGL VHV+E+S + + +++ GDE
Sbjct: 189 SKLEVGSIVTGKVARLTSFGAFIDLGGVDGL------VHVTELSHERNVSPKSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
V VKV+ ID E R++LS+K P +K+ G VI + +E LP
Sbjct: 243 VDVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGKVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|237653696|ref|YP_002890010.1| 30S ribosomal protein S1 [Thauera sp. MZ1T]
gi|237624943|gb|ACR01633.1| ribosomal protein S1 [Thauera sp. MZ1T]
Length = 567
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L+ GDE+ KV+K D+EK+R++L
Sbjct: 211 DYGAFVDLGGIDGLLHITDL------AWRRVRHPSEVLSVGDEIEAKVLKFDQEKNRVSL 264
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 265 GLKQLGEDP 273
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V +++ +E+ +++ K + W+ ++ D G+
Sbjct: 320 NKNIHPTKVVQLGDEVEVMILEIDEDRRRISLGMKQCMSNPWDDFAINHKKGDKVRGQIK 379
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + +D +GDEV V+ ID E+
Sbjct: 380 SITDFGVFIGLEGG-----IDGLVHLSDLSWSESGEDAVRRFKKGDEVEAVVLAIDVERE 434
Query: 122 RITLSIKQLEEDP 134
RI+L IKQLE DP
Sbjct: 435 RISLGIKQLEGDP 447
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W ++I ++ GDEV V +++ID ++ RI
Sbjct: 296 DYGAFVEVE-----QGIEGLVHVSEMDW-TNKNIHPTKVVQLGDEVEVMILEIDEDRRRI 349
Query: 124 TLSIKQLEEDP 134
+L +KQ +P
Sbjct: 350 SLGMKQCMSNP 360
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SE + + D+ + EGDEV VI +DR+ I+LSI+ ++ E + K
Sbjct: 483 GYLRASEAAPHRVDDLTTMFKEGDEVEALVINVDRKTRSISLSIRAKDQVEQSEAMSK-- 540
Query: 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE 180
++ SS S+ +N LGA+ + L E
Sbjct: 541 ------LASESSASAGTTN-------LGALLKAKLNE 564
>gi|392960771|ref|ZP_10326236.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans DSM 17108]
gi|421054471|ref|ZP_15517439.1| hydroxymethylbutenyl pyrophosphate reductase [Pelosinus fermentans
B4]
gi|421057827|ref|ZP_15520592.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans B3]
gi|421067200|ref|ZP_15528705.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A12]
gi|421071333|ref|ZP_15532453.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A11]
gi|392440829|gb|EIW18489.1| hydroxymethylbutenyl pyrophosphate reductase [Pelosinus fermentans
B4]
gi|392447249|gb|EIW24503.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A11]
gi|392450628|gb|EIW27660.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans A12]
gi|392454668|gb|EIW31490.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans DSM 17108]
gi|392462106|gb|EIW38224.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
fermentans B3]
Length = 655
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 22/135 (16%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIF----VGR----------D 66
TG ++ + I+ + K+ + S K V + R+ E+IF VG+ D
Sbjct: 419 FTGQTLTFQPIEVDRIKKRAILSRK--VILQEQRRILEEEIFSKLAVGQIVSGTVRRIVD 476
Query: 67 YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126
+GAF+ + DGL VH+S++SW ++ ++I+ GD+V+V ++KID E RI+LS
Sbjct: 477 FGAFVDIGGIDGL------VHISDLSWHRVKSPQEIVALGDQVKVLILKIDNEAKRISLS 530
Query: 127 IKQLEEDPLLETLEK 141
+K++ DP L+ +E+
Sbjct: 531 LKEVGRDPWLDLIEQ 545
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 19/138 (13%)
Query: 5 HSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDI 61
H K PQ+ + G + V +++ + E K++ S K+ W + ++ I
Sbjct: 498 HRVKSPQEIV------ALGDQVKVLILKIDNEAKRISLSLKEVGRDPWLDLIEQYSIGAI 551
Query: 62 FVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
G+ +GAF+ L + + GLVH+SE+S + + + DI+ G EV VK+++I
Sbjct: 552 EKGKVTKITKFGAFVEL-----VPGIEGLVHMSELSDERVNKVEDIVAIGQEVTVKILEI 606
Query: 117 DREKSRITLSIKQLEEDP 134
++E RI+LSI + ++D
Sbjct: 607 NKENKRISLSINKAQQDA 624
>gi|340354169|ref|ZP_08676960.1| 30S ribosomal protein S1 [Prevotella pallens ATCC 700821]
gi|339607441|gb|EGQ12376.1| 30S ribosomal protein S1 [Prevotella pallens ATCC 700821]
Length = 591
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I+V ++ +EE K++ K W+ + V D G+ DYGAF+ ++ P
Sbjct: 262 INVVILDFDEEKKRIALGLKQLAPHPWDALDPNLKVGDHVKGKVVVMADYGAFVEIQ-PG 320
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ ++ + GDEV V+ +DR++ +++L IKQL EDP
Sbjct: 321 ----VEGLIHVSEMSWSQHLRSAQEFMKAGDEVEAVVLTLDRDERKMSLGIKQLREDP-W 375
Query: 137 ETLEKVIP 144
ET+E P
Sbjct: 376 ETIEAKYP 383
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVG-----RDYG 68
G + KV++ N+E + +V S K +A + S + I G YG
Sbjct: 168 FVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQRKEIISHLEKGQILEGVVKNITSYG 227
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+ L DGL +H++++SW I D +++ ++ V ++ D EK RI L +K
Sbjct: 228 VFVDLGGVDGL------IHITDLSWGRINDPHEVVELDQKINVVILDFDEEKKRIALGLK 281
Query: 129 QLEEDP 134
QL P
Sbjct: 282 QLAPHP 287
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ L +G+ GL+H+S++SW ++ + + GDE+ V V++ID+E R++
Sbjct: 397 NFGIFVELE--EGV---DGLIHISDLSWTKKVKHPSEFTHVGDEIDVVVLEIDKENRRLS 451
Query: 125 LSIKQLEEDP 134
L KQLE +P
Sbjct: 452 LGHKQLETNP 461
>gi|22299589|ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
Length = 330
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAV----WNKYSSRVNVEDIFVG-RDYGAFIHLRF 75
L G + +K ++ +EE +LV S + A+ NK V G + YGAFI +
Sbjct: 158 LVGEELPLKFLEVDEERNRLVLSHRRALVERKMNKLEVGEVVVGTVRGIKPYGAFIDIG- 216
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I + N D+V+V +I +D E+ RI+LS KQLE +P
Sbjct: 217 -----GVSGLLHISEISHDHIDTPHSVFNVNDQVKVMIIDLDAERGRISLSTKQLEPEP 270
>gi|73667233|ref|YP_303249.1| 30S ribosomal protein S1 [Ehrlichia canis str. Jake]
gi|72394374|gb|AAZ68651.1| SSU ribosomal protein S1P [Ehrlichia canis str. Jake]
Length = 567
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEG 106
Y S++N DI G+ YG FI + + + GL+H++++SW + + + G
Sbjct: 224 YLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCG 283
Query: 107 DEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQD 146
V+ K+IKIDRE +I+L +KQLEE P +EK P D
Sbjct: 284 QTVKTKIIKIDRENKKISLGVKQLEESP-WSNIEKKYPVD 322
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVG-----RDYGAFIHL 73
G + K+I+ + E KK+ K ++ W+ + V+ I G DYG F+ L
Sbjct: 282 CGQTVKTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSIHKGIVTSIEDYGVFVEL 341
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQ-DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSEVSW I + G+E++VKV+ ID KSR++LS+K+ +E
Sbjct: 342 E-----TGIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQE 396
Query: 133 DP 134
+P
Sbjct: 397 NP 398
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 71 IHLRFPDGLYH--LTGLVHVSEVSWDLIQDIR-DILNEGDEVRVKVIKIDREKSRITLSI 127
I + F D + + GL+ +E+SW L + + GD V K++ I+ KS+I L +
Sbjct: 424 IFVSFEDNTLNDGIEGLIRTTELSWSLSPEAAVKKYSIGDSVEAKILMINPNKSKIDLGV 483
Query: 128 KQLEEDPLLETLEK 141
KQLE DP L+ L+K
Sbjct: 484 KQLEYDPFLDLLKK 497
>gi|389736841|ref|ZP_10190351.1| 30S ribosomal protein S1 [Rhodanobacter sp. 115]
gi|388438809|gb|EIL95529.1| 30S ribosomal protein S1 [Rhodanobacter sp. 115]
Length = 558
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ +++N GDE+ V+V+K DRE++R++L
Sbjct: 205 DYGAFVDLGGIDGLLHIT------DMAWKRVRHPSEVVNVGDELDVRVLKFDRERNRVSL 258
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 259 GLKQLGDDP 267
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G V V+ +EE +++ K W +++ D G+ D+G FI L
Sbjct: 326 GDETEVMVLDVDEERRRISLGIKQTRSNPWEAFAAMHKKNDKVSGQIKSITDFGIFIGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
DG + GLVH+S++SW + +D+ +GDE+ V+ +D E RI+L IKQ+E+D
Sbjct: 385 --DG--GIDGLVHLSDISWQVSGEDLVRNFKKGDEIEAVVLAVDPEHERISLGIKQMEQD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V+V++ + E ++ K D W S R V G+ DYG F+ +
Sbjct: 239 GDELDVRVLKFDRERNRVSLGLKQLGDDPWVNISRRYPVSSRIFGKVSNVTDYGCFVEIE 298
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P + GLVHVSE+ W + + ++ GDE V V+ +D E+ RI+L IKQ +
Sbjct: 299 -P----GVEGLVHVSEMDWTNKNVNPAKVVQVGDETEVMVLDVDEERRRISLGIKQTRSN 353
Query: 134 P 134
P
Sbjct: 354 P 354
>gi|82703189|ref|YP_412755.1| 30S ribosomal protein S1 [Nitrosospira multiformis ATCC 25196]
gi|82411254|gb|ABB75363.1| SSU ribosomal protein S1P [Nitrosospira multiformis ATCC 25196]
Length = 571
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++++ GDEV KV+K D+EK+R++L
Sbjct: 213 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVISVGDEVTAKVLKFDQEKNRVSL 266
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 267 GMKQLTEDP 275
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 16/123 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + V +++ +EE +++ K W ++ D G+ D+G FI L+
Sbjct: 334 GDEVEVMILEIDEERRRISLGMKQCKVNPWEDFAMNHQKGDKVRGQIKSITDFGVFIGLQ 393
Query: 75 FPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH+S++SW+ + +R+ +GDEV V+ ID E+ RI+L IKQLE
Sbjct: 394 -----GGIDGLVHLSDLSWNQPGEEAVRN-YKKGDEVEAVVLSIDVERERISLGIKQLEG 447
Query: 133 DPL 135
DP
Sbjct: 448 DPF 450
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++ KV++ ++E ++ K W S R G+ DYGAF+ +
Sbjct: 247 GDEVTAKVLKFDQEKNRVSLGMKQLTEDPWVGLSRRYPPHTRLFGKVSNLTDYGAFVEIE 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDI--RDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W +++ ++ GDEV V +++ID E+ RI+L +KQ +
Sbjct: 307 -----QGIEGLVHVSEMDW-TNKNVYPSKVVQLGDEVEVMILEIDEERRRISLGMKQCKV 360
Query: 133 DP 134
+P
Sbjct: 361 NP 362
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 84 GLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVI 143
G + SEVS D ++DIR L EGD V +I +DR+ I LSIK + + ++KV
Sbjct: 485 GYLRASEVSRDRVEDIRSHLKEGDVVEAMIINVDRKNRGINLSIKAKDMAEESDAMQKV- 543
Query: 144 PQDGSVISDSSSMSS 158
D S + ++S+ +
Sbjct: 544 AGDASASAGTTSLGA 558
>gi|228478187|ref|ZP_04062795.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126]
gi|228249866|gb|EEK09136.1| 30S ribosomal protein S1 homolog [Streptococcus salivarius SK126]
Length = 400
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ +EE ++ S K W+ ++ D+ G+ D+GAF+ +
Sbjct: 240 GDEVEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIEGKVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G +V VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAERVSLSIKALEERP 354
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S++ V I G+ +GAFI L DGL H+T L H VS + +++ GDE
Sbjct: 189 SKLEVGSIVTGKVARLTSFGAFIDLGGVDGLVHVTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
V VKV+ ID E R++LS+K P +K+ G VI + +E LP
Sbjct: 243 VEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGKVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|149010508|ref|ZP_01831879.1| ribosomal protein S1 [Streptococcus pneumoniae SP19-BS75]
gi|147764989|gb|EDK71918.1| ribosomal protein S1 [Streptococcus pneumoniae SP19-BS75]
Length = 400
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSIKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LSIK P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSIKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GL 170
G+
Sbjct: 301 GI 302
>gi|312863902|ref|ZP_07724140.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396]
gi|340399262|ref|YP_004728287.1| 30S ribosomal protein S1P [Streptococcus salivarius CCHSS3]
gi|387783687|ref|YP_006069770.1| 30S ribosomal protein S1 [Streptococcus salivarius JIM8777]
gi|418018237|ref|ZP_12657793.1| 30S ribosomal protein S1 [Streptococcus salivarius M18]
gi|311101438|gb|EFQ59643.1| putative ribosomal protein S1 [Streptococcus vestibularis F0396]
gi|338743255|emb|CCB93763.1| SSU ribosomal protein S1P [Streptococcus salivarius CCHSS3]
gi|338744569|emb|CCB94935.1| 30S ribosomal protein S1 [Streptococcus salivarius JIM8777]
gi|345527086|gb|EGX30397.1| 30S ribosomal protein S1 [Streptococcus salivarius M18]
Length = 400
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV+ +EE ++ S K W+ ++ D+ G+ D+GAF+ +
Sbjct: 240 GDEVEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIEGKVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVH+S++S +++ +D+L+ G +V VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAERVSLSIKALEERP 354
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
S++ V I G+ +GAFI L DGL H+T L H VS + +++ GDE
Sbjct: 189 SKLEVGSIVTGKVARLTSFGAFIDLGGVDGLVHVTELSHERNVSP------KSVVSVGDE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
V VKV+ ID E R++LS+K P +K+ G VI + +E LP
Sbjct: 243 VEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAA--GDVIEGKVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>gi|295109915|emb|CBL23868.1| Ribosomal protein S1 [Ruminococcus obeum A2-162]
Length = 358
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K+L+ +EK + R++V D G D+GAFI L DGL +H+SE+S
Sbjct: 173 KQLLLAEKAEKQKELMERIHVGDTVTGTVKNVTDFGAFIDLGGADGL------LHISEMS 226
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
W +++ + + N GDEV+V + +I+ +K I LS+K EE+P L E G+V++
Sbjct: 227 WGRVENPKKVFNVGDEVKVLIKEINGDK--IALSMKFPEENPWLSAAEDFAV--GNVVTG 282
Query: 153 SSSMSSSNSNTIEPLPGLGAIF 174
+ + +E PG+ A+
Sbjct: 283 KVARMTDFGAFVELAPGIDALL 304
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W + V ++ G+ D+GAF+ L P + L+HVS++S + + D+L
Sbjct: 267 WLSAAEDFAVGNVVTGKVARMTDFGAFVELA-P----GIDALLHVSQISREHVAKPSDVL 321
Query: 104 NEGDEVRVKVIKIDREKSRITLSIK 128
+ G E++ KV+ + E +I+LS+K
Sbjct: 322 SIGQEIQAKVVDFNGEDKKISLSMK 346
>gi|323345184|ref|ZP_08085408.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269]
gi|323094454|gb|EFZ37031.1| 30S ribosomal protein S1 [Prevotella oralis ATCC 33269]
Length = 590
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
I+V ++ +EE K++ K W+ + V D G+ DYGAF+ + P
Sbjct: 262 INVVILDFDEEKKRIALGLKQLTPHPWDALDPNLKVGDHVKGKVVVMADYGAFVEIA-PG 320
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ ++ ++ GDEV ++ +DRE+ +++L IKQL+EDP
Sbjct: 321 ----VEGLIHVSEMSWSQHLRSAQEFMHVGDEVEAVILTLDREERKMSLGIKQLKEDP-W 375
Query: 137 ETLEKVIP 144
ET+E+ P
Sbjct: 376 ETIEEKYP 383
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEK-------DAVWNKYSSRVNVEDIFVGR-----DYG 68
G + KV++ N+E + +V S K +A + S++ + G YG
Sbjct: 168 FVGKTMEFKVVKINQEFRNVVVSHKALIEAELEAQKKEIISKLEKGQVLEGTVKNITSYG 227
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
F+ L DGL +H++++SW + D +++ ++ V ++ D EK RI L +K
Sbjct: 228 VFVDLGGVDGL------IHITDLSWGRVSDPHEVVALDQKINVVILDFDEEKKRIALGLK 281
Query: 129 QLEEDP 134
QL P
Sbjct: 282 QLTPHP 287
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 13/93 (13%)
Query: 44 EKDAVWNKYSSRVNVEDIFVGRDYGAF-IHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRD 101
EK V +K++++V R++ F I + +G+ GL+H+S++SW ++ +
Sbjct: 380 EKYPVGSKHTAKV--------RNFTNFGIFVELEEGV---DGLIHISDLSWTKKVKHPSE 428
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+G E+ V V++ID+E R++L KQLE++P
Sbjct: 429 FTTQGAEIEVVVLEIDKENRRLSLGHKQLEDNP 461
>gi|383120691|ref|ZP_09941416.1| ribosomal protein S1 [Bacteroides sp. 1_1_6]
gi|251840263|gb|EES68345.1| ribosomal protein S1 [Bacteroides sp. 1_1_6]
Length = 599
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++V ++ ++E K++ K W+ + + V D G+ DYGAFI +
Sbjct: 263 LNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGKVVVMADYGAFIEI---- 318
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ +D + GDEV V+ +DRE+ +++L IKQL++DP
Sbjct: 319 -ATGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMSLGIKQLKQDP-W 376
Query: 137 ETLEKVIP 144
ET+E+ P
Sbjct: 377 ETIEEKYP 384
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G + KV++ N+E K +V S K + + ++ + G YG
Sbjct: 169 FVGKTMEFKVVKINQEFKNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYG 228
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
FI L DGL +H++++SW + D ++++ ++ V ++ D EK RI L +K
Sbjct: 229 VFIDLGGVDGL------IHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282
Query: 129 QLEEDP 134
QL P
Sbjct: 283 QLTPHP 288
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ + + GL+H+S++SW ++ + G ++ V+V++ID+E R++
Sbjct: 398 NFGVFVEIE-----EGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKENRRLS 452
Query: 125 LSIKQLEEDP 134
L KQLEE+P
Sbjct: 453 LGHKQLEENP 462
>gi|153810812|ref|ZP_01963480.1| hypothetical protein RUMOBE_01196 [Ruminococcus obeum ATCC 29174]
gi|149833208|gb|EDM88290.1| putative ribosomal protein S1 [Ruminococcus obeum ATCC 29174]
Length = 359
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 38 KKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS 92
K+L+ +EK + +++V D G D+GAFI L DGL +H+SE+S
Sbjct: 173 KQLLLAEKAEKQKELMEKIHVGDTVTGTVKNVTDFGAFIDLGGADGL------LHISEMS 226
Query: 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISD 152
W +++ + + N GDEVRV + +I+ +K I LS+K EE+P L E G+V++
Sbjct: 227 WGRVENPKKVFNVGDEVRVLIKEINGDK--IALSMKFPEENPWLSAAEDFAV--GNVVTG 282
Query: 153 SSSMSSSNSNTIEPLPGLGAIF 174
+ + +E PG+ A+
Sbjct: 283 KVARMTDFGAFVELAPGIDALL 304
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDIL 103
W + V ++ G+ D+GAF+ L P + L+HVS++S + + D+L
Sbjct: 267 WLSAAEDFAVGNVVTGKVARMTDFGAFVELA-P----GIDALLHVSQISKEHVAKPSDVL 321
Query: 104 NEGDEVRVKVIKIDREKSRITLSIK 128
+ G E++ KV+ + + +I+LS+K
Sbjct: 322 SIGQEIQAKVVDFNGDDKKISLSMK 346
>gi|89892944|ref|YP_516431.1| hypothetical protein DSY0198 [Desulfitobacterium hafniense Y51]
gi|219666211|ref|YP_002456646.1| RNA binding S1 domain-containing protein [Desulfitobacterium
hafniense DCB-2]
gi|423072892|ref|ZP_17061638.1| S1 RNA binding domain protein [Desulfitobacterium hafniense DP7]
gi|89332392|dbj|BAE81987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536471|gb|ACL18210.1| RNA binding S1 domain protein [Desulfitobacterium hafniense DCB-2]
gi|361856311|gb|EHL08226.1| S1 RNA binding domain protein [Desulfitobacterium hafniense DP7]
Length = 128
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 7/88 (7%)
Query: 58 VEDIFVG-RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116
VE + G ++GAF+ L P+ +TGLVH+SEV+ ++D+RD L E D V+VKVI +
Sbjct: 9 VEGVVTGITNFGAFVEL--PE---KVTGLVHISEVADAYVKDVRDYLKEQDRVKVKVIHV 63
Query: 117 DREKSRITLSIKQLEEDPLLETLEKVIP 144
D EK +I LSIKQ P T E+ P
Sbjct: 64 D-EKGKIGLSIKQANPSPKNTTRERRQP 90
>gi|29349753|ref|NP_813256.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482]
gi|29341663|gb|AAO79450.1| 30S ribosomal protein S1 [Bacteroides thetaiotaomicron VPI-5482]
Length = 599
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 15/128 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
++V ++ ++E K++ K W+ + + V D G+ DYGAFI +
Sbjct: 263 LNVVILDFDDEKKRIALGLKQLTPHPWDALDTDLKVGDKVKGKVVVMADYGAFIEI---- 318
Query: 78 GLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
+ GL+HVSE+SW ++ +D + GDEV V+ +DRE+ +++L IKQL++DP
Sbjct: 319 -ATGVEGLIHVSEMSWSQHLRSAQDFMKVGDEVEAVVLTLDREERKMSLGIKQLKQDP-W 376
Query: 137 ETLEKVIP 144
ET+E+ P
Sbjct: 377 ETIEEKYP 384
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS-------SRVNVEDIFVGR-----DYG 68
G + KV++ N+E K +V S K + + ++ + G YG
Sbjct: 169 FVGKTMEFKVVKINQEFKNVVVSHKALIEAELEQQKKEIIGKLEKGQVLEGTVKNITSYG 228
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
FI L DGL +H++++SW + D ++++ ++ V ++ D EK RI L +K
Sbjct: 229 VFIDLGGVDGL------IHITDLSWGRVSDPKEVVELDQKLNVVILDFDDEKKRIALGLK 282
Query: 129 QLEEDP 134
QL P
Sbjct: 283 QLTPHP 288
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ + + GL+H+S++SW ++ + G ++ V+V++ID+E R++
Sbjct: 398 NFGVFVEIE-----EGVDGLIHISDLSWTKKVKHPSEFTQIGADIEVQVLEIDKENRRLS 452
Query: 125 LSIKQLEEDP 134
L KQLEE+P
Sbjct: 453 LGHKQLEENP 462
>gi|260891275|ref|ZP_05902538.1| ribosomal protein S1 [Leptotrichia hofstadii F0254]
gi|260858951|gb|EEX73451.1| ribosomal protein S1 [Leptotrichia hofstadii F0254]
Length = 600
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 11/89 (12%)
Query: 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNE 105
KY +VN+ D+ G+ D+G + L +G +H+SE+SW+ + ++ +
Sbjct: 163 KYFEKVNIGDVVTGKIKEIFDFGIILDLE------ATSGFIHISEISWNQVDNLTEKYKI 216
Query: 106 GDEVRVKVIKIDREKSRITLSIKQLEEDP 134
GDE+ K+I+ D EK+R+ LSIKQL EDP
Sbjct: 217 GDEISAKIIEKDAEKNRLKLSIKQLSEDP 245
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 18 AKGLTGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGA 69
+K G +I K++ N+E ++ S K D W + ++ F G+ DYG
Sbjct: 383 SKYKAGDVIKFKIVDFNDEKNRITLSAKALLDDRWEVLEETYDFDNAFKGKVMNVQDYGI 442
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129
F+ L + +H +E SWD + GDEV K+I +D+ +++ SIKQ
Sbjct: 443 FVELE-----KGIEVFIHKNEFSWDRKEHKE--YKVGDEVEFKIIVVDKLAKKLSGSIKQ 495
Query: 130 LEEDPLLETLEK 141
LE+ P E E+
Sbjct: 496 LEKSPWKEVTEQ 507
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIF--VGRDYGAFIHLRFPD 77
G IS K+I+ + E +L S K + W +++ NV D+ V +D F + D
Sbjct: 217 GDEISAKIIEKDAEKNRLKLSIKQLSEDPWVAFAASHNVGDVVEAVVKDVLDFGIVVTVD 276
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
G +G VHVSE++W + +++++ EGD+ K+I+I+ EK + LS+KQL E+P
Sbjct: 277 GN---SGFVHVSELAWHNGAKELKN-YKEGDKFSAKIIQIEDEKKNVKLSVKQLLENP 330
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G S K+IQ +E K + S K + W+ + ++ DI D+G I L
Sbjct: 302 GDKFSAKIIQIEDEKKNVKLSVKQLLENPWDTVKEKYHIGDIIEKPITEVFDFGLLISLE 361
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GL+HVS++S+ ++ GD ++ K++ + EK+RITLS K L +D
Sbjct: 362 -----KDIDGLLHVSDLSYKRETNLTSKYKAGDVIKFKIVDFNDEKNRITLSAKALLDDR 416
Query: 135 LLETLEKVIPQDGS 148
E LE+ D +
Sbjct: 417 -WEVLEETYDFDNA 429
>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
Length = 416
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYS---SRVNVE----DIFVGR-----DYGAF 70
G I K+I+ + +L+ S +D + + S SR+ E D+ G+ ++GAF
Sbjct: 157 GQTIRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAF 216
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
I L DGL VHVSE+S D + D+L GD+V+VK++ +D EK RI+LSIK
Sbjct: 217 IDLGGVDGL------VHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKAT 270
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ P E +G+V+ + +E PG+
Sbjct: 271 QPGPWEAAAENA--PEGTVLEGTVKRVVDFGAFVEVFPGV 308
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 5/69 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + FP + GLVHVS+++ + + D+L GD+V VKV++++ +K R++L
Sbjct: 297 DFGAFVEV-FP----GVEGLVHVSQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSL 351
Query: 126 SIKQLEEDP 134
SIK LEE P
Sbjct: 352 SIKALEEAP 360
>gi|406940559|gb|EKD73284.1| hypothetical protein ACD_45C00374G0002, partial [uncultured
bacterium]
Length = 499
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T ++SW + +IL GDEV+VKV+K+DR+ +R++L
Sbjct: 115 DYGAFVDLGGIDGLLHIT------DMSWKRTRHPSEILKLGDEVKVKVLKVDRDHARVSL 168
Query: 126 SIKQLEEDP 134
+KQL DP
Sbjct: 169 GLKQLGGDP 177
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 25/162 (15%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVN 57
M ++ P K +H G + V V+ + + +++ K + W ++ +
Sbjct: 220 MDWTNKNVNPNKVLH------LGQEVEVMVLDVDADRRRISLGLKQCIVNPWAAFAEHHH 273
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD---LIQDIRDILNEGDEV 109
+ G+ D+G FI L DG + GL+++S+++W+ + +R +GDE+
Sbjct: 274 DGEKIKGKIKSITDFGIFIEL---DG--GIDGLIYLSDIAWNEKEAEEKLRQ-YQKGDEL 327
Query: 110 RVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVIS 151
V+ ID E+ RI L +KQL +DP+ L+ + G+++S
Sbjct: 328 EALVLTIDVERERIALGLKQLTDDPVAHYLQN--NKKGNIVS 367
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + ++ K W R V+ GR +YG F+ +
Sbjct: 149 GDEVKVKVLKVDRDHARVSLGLKQLGGDPWRDIGDRYLVKSKITGRVTNITEYGCFVEIE 208
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+ GLVHVSE+ W + + +L+ G EV V V+ +D ++ RI+L +KQ +
Sbjct: 209 SG-----IEGLVHVSEMDWTNKNVNPNKVLHLGQEVEVMVLDVDADRRRISLGLKQCIVN 263
Query: 134 P 134
P
Sbjct: 264 P 264
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,756,410,142
Number of Sequences: 23463169
Number of extensions: 108570135
Number of successful extensions: 330027
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10238
Number of HSP's successfully gapped in prelim test: 1714
Number of HSP's that attempted gapping in prelim test: 301697
Number of HSP's gapped (non-prelim): 22013
length of query: 182
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 49
effective length of database: 9,238,593,890
effective search space: 452691100610
effective search space used: 452691100610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 72 (32.3 bits)