Query 030172
Match_columns 182
No_of_seqs 167 out of 1538
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kl9_A Eukaryotic translation 99.9 3.1E-25 1E-29 171.1 1.0 116 56-178 13-134 (182)
2 3go5_A Multidomain protein wit 99.9 4.7E-23 1.6E-27 169.1 10.1 138 21-179 41-186 (285)
3 2a19_A EIF-2- alpha, eukaryoti 99.8 6.4E-22 2.2E-26 151.8 0.6 117 57-180 14-136 (175)
4 1q8k_A Eukaryotic translation 99.8 8.5E-21 2.9E-25 156.9 0.3 113 56-175 11-129 (308)
5 3aev_A Translation initiation 99.8 3.5E-20 1.2E-24 151.2 0.3 119 55-180 8-132 (275)
6 3go5_A Multidomain protein wit 99.8 1.9E-18 6.3E-23 141.8 10.5 122 5-141 97-228 (285)
7 2khi_A 30S ribosomal protein S 99.8 9.2E-19 3.1E-23 125.6 6.7 90 47-141 19-114 (115)
8 1luz_A Protein K3, protein K2; 99.7 8.3E-17 2.8E-21 110.1 6.8 77 53-133 6-87 (88)
9 2k4k_A GSP13, general stress p 99.7 2E-16 6.7E-21 115.7 8.1 117 54-179 3-124 (130)
10 2khj_A 30S ribosomal protein S 99.7 1.5E-16 5E-21 113.0 6.5 81 47-132 20-105 (109)
11 2cqo_A Nucleolar protein of 40 99.6 5.4E-17 1.8E-21 117.0 3.5 89 47-139 11-106 (119)
12 2eqs_A ATP-dependent RNA helic 99.6 3.9E-16 1.3E-20 109.7 7.4 81 53-138 7-94 (103)
13 2k52_A Uncharacterized protein 99.6 4.1E-15 1.4E-19 99.8 9.8 69 55-132 2-75 (80)
14 3cw2_C Translation initiation 99.6 8.5E-17 2.9E-21 130.7 -1.5 104 54-162 7-116 (266)
15 4aid_A Polyribonucleotide nucl 99.4 1.5E-14 5E-19 131.1 -0.6 103 32-141 604-719 (726)
16 3cdi_A Polynucleotide phosphor 99.4 5.7E-14 1.9E-18 127.5 0.0 101 32-139 594-707 (723)
17 1e3p_A Guanosine pentaphosphat 99.3 1.2E-14 4E-19 132.5 -5.8 104 32-142 632-754 (757)
18 1go3_E DNA-directed RNA polyme 99.3 2.2E-12 7.4E-17 99.5 6.9 79 51-135 74-173 (187)
19 4ayb_E DNA-directed RNA polyme 99.3 3.1E-12 1.1E-16 98.0 5.9 80 49-134 72-171 (180)
20 1wi5_A RRP5 protein homolog; S 99.3 4.7E-12 1.6E-16 90.9 5.4 76 53-132 16-97 (119)
21 3psi_A Transcription elongatio 99.2 1.1E-11 3.8E-16 117.5 7.4 74 53-131 897-976 (1219)
22 3bzc_A TEX; helix-turn-helix, 99.2 7.1E-12 2.4E-16 114.6 2.2 74 53-131 649-727 (785)
23 2nn6_I 3'-5' exoribonuclease C 99.1 6.3E-11 2.2E-15 92.9 7.1 77 54-130 77-163 (209)
24 3psf_A Transcription elongatio 99.1 6.2E-12 2.1E-16 117.6 0.0 73 54-131 901-979 (1030)
25 3m7n_A Putative uncharacterize 99.1 2E-10 7E-15 88.0 7.3 68 54-130 54-134 (179)
26 1hh2_P NUSA, N utilization sub 99.0 4.8E-11 1.6E-15 99.7 2.2 109 8-129 71-200 (344)
27 1y14_B B16, RPB7, DNA-directed 99.0 3E-10 1E-14 86.3 5.5 65 51-121 76-155 (171)
28 2khj_A 30S ribosomal protein S 99.0 3.7E-10 1.3E-14 79.7 3.8 54 124-179 11-64 (109)
29 2id0_A Exoribonuclease 2; RNAs 98.9 1.7E-10 5.8E-15 104.0 1.6 116 2-128 497-643 (644)
30 2b8k_G B16, DNA-directed RNA p 98.9 1.3E-09 4.4E-14 85.8 6.2 78 51-135 76-171 (215)
31 2c35_B Human RPB7, DNA-directe 98.9 1.9E-09 6.5E-14 81.9 7.0 71 52-129 75-165 (172)
32 2je6_I RRP4, exosome complex R 98.9 1.6E-09 5.5E-14 87.1 5.4 70 54-129 70-147 (251)
33 2ba0_A Archeal exosome RNA bin 98.8 6.9E-09 2.4E-13 82.3 7.5 70 54-129 53-128 (229)
34 2khi_A 30S ribosomal protein S 98.8 1.3E-09 4.3E-14 77.7 2.0 53 124-178 10-62 (115)
35 3h0g_G DNA-directed RNA polyme 98.8 1.4E-09 4.7E-14 82.8 2.0 73 49-128 75-165 (172)
36 2z0s_A Probable exosome comple 98.8 5.2E-09 1.8E-13 83.4 4.9 70 54-129 62-140 (235)
37 2bh8_A 1B11; transcription, mo 98.6 3.7E-08 1.3E-12 68.5 5.1 75 56-178 11-93 (101)
38 2vnu_D Exosome complex exonucl 98.5 1.2E-09 4E-14 100.1 -5.8 116 2-128 603-760 (760)
39 2wp8_J Exosome complex exonucl 98.5 1.7E-09 6E-14 101.1 -6.3 117 2-128 820-977 (977)
40 3ayh_B DNA-directed RNA polyme 98.4 3.1E-07 1.1E-11 71.5 5.1 63 52-120 75-161 (203)
41 2ckz_B C25, DNA-directed RNA p 98.3 3.8E-07 1.3E-11 71.8 4.1 66 51-121 74-158 (218)
42 2nn6_H Exosome complex exonucl 98.2 9E-07 3.1E-11 73.0 3.7 70 54-129 91-175 (308)
43 2bx2_L Ribonuclease E, RNAse E 98.2 2.7E-06 9.1E-11 74.6 6.7 70 54-128 41-126 (517)
44 1k0r_A NUSA; two component arr 98.2 2.8E-06 9.4E-11 71.3 6.5 79 53-140 123-213 (366)
45 2cqo_A Nucleolar protein of 40 98.1 9.5E-07 3.2E-11 63.1 2.6 48 130-179 8-56 (119)
46 2k52_A Uncharacterized protein 98.0 2.8E-06 9.6E-11 56.2 3.3 34 146-179 5-38 (80)
47 2ja9_A Exosome complex exonucl 98.0 1.1E-05 3.8E-10 61.3 6.5 67 55-128 4-76 (175)
48 2bh8_A 1B11; transcription, mo 98.0 8.5E-06 2.9E-10 56.4 4.9 71 21-96 12-99 (101)
49 1kl9_A Eukaryotic translation 97.9 7.7E-09 2.6E-13 79.4 -12.2 87 5-98 43-143 (182)
50 1e3p_A Guanosine pentaphosphat 97.9 4.9E-07 1.7E-11 82.6 -2.7 75 66-179 626-700 (757)
51 1luz_A Protein K3, protein K2; 97.9 7.9E-06 2.7E-10 55.2 3.2 32 145-177 10-43 (88)
52 2eqs_A ATP-dependent RNA helic 97.9 8.2E-06 2.8E-10 56.6 3.0 34 146-179 12-48 (103)
53 3cdi_A Polynucleotide phosphor 97.8 2.5E-06 8.6E-11 77.6 0.0 37 141-179 624-660 (723)
54 2asb_A Transcription elongatio 97.7 0.00019 6.5E-09 57.2 8.6 67 55-130 4-82 (251)
55 1wi5_A RRP5 protein homolog; S 97.7 1.5E-05 5.1E-10 56.6 1.9 50 126-178 4-54 (119)
56 2r7d_A Ribonuclease II family 97.6 7.7E-05 2.6E-09 64.8 5.3 108 2-128 340-461 (469)
57 1y14_B B16, RPB7, DNA-directed 97.4 8.2E-05 2.8E-09 56.1 3.6 33 146-179 83-115 (171)
58 1hh2_P NUSA, N utilization sub 97.4 8.3E-06 2.8E-10 68.1 -3.0 76 102-179 86-166 (344)
59 2b8k_G B16, DNA-directed RNA p 97.3 0.00015 5.1E-09 56.8 3.6 34 145-179 82-115 (215)
60 2z0s_A Probable exosome comple 97.1 0.00031 1.1E-08 55.6 3.5 68 104-179 31-99 (235)
61 1go3_E DNA-directed RNA polyme 97.0 0.0004 1.4E-08 52.8 3.1 32 145-177 80-111 (187)
62 2c35_B Human RPB7, DNA-directe 97.0 0.00053 1.8E-08 51.5 3.6 33 146-179 81-113 (172)
63 4aid_A Polyribonucleotide nucl 96.9 0.00013 4.3E-09 66.4 0.0 33 146-178 637-669 (726)
64 2nn6_G Exosome complex exonucl 96.9 0.00089 3E-08 54.6 4.6 69 54-129 123-196 (289)
65 3psi_A Transcription elongatio 96.8 0.00057 1.9E-08 65.3 3.2 38 140-179 898-935 (1219)
66 3h0g_G DNA-directed RNA polyme 96.8 0.0005 1.7E-08 51.8 2.2 35 144-179 82-116 (172)
67 4ayb_E DNA-directed RNA polyme 96.7 0.00086 3E-08 50.7 3.1 34 144-178 79-112 (180)
68 3m7n_A Putative uncharacterize 96.7 0.00085 2.9E-08 50.9 3.0 38 141-179 53-100 (179)
69 3psf_A Transcription elongatio 96.7 0.00022 7.7E-09 67.1 -0.5 38 140-179 901-938 (1030)
70 3bzc_A TEX; helix-turn-helix, 96.7 0.00062 2.1E-08 62.5 2.2 34 146-179 654-687 (785)
71 2a19_A EIF-2- alpha, eukaryoti 96.5 0.00018 6.2E-09 54.5 -2.1 61 5-65 43-110 (175)
72 1q8k_A Eukaryotic translation 96.4 4.6E-05 1.6E-09 62.8 -6.5 68 5-72 41-121 (308)
73 2je6_I RRP4, exosome complex R 96.4 0.0024 8E-08 51.0 3.6 39 141-179 69-107 (251)
74 2nn6_I 3'-5' exoribonuclease C 95.9 0.0051 1.8E-07 47.7 3.3 36 142-177 77-120 (209)
75 2ba0_A Archeal exosome RNA bin 95.9 0.0062 2.1E-07 47.9 3.7 39 141-179 52-90 (229)
76 2ckz_B C25, DNA-directed RNA p 95.8 0.0058 2E-07 47.8 3.4 32 145-176 80-111 (218)
77 3ayh_B DNA-directed RNA polyme 95.6 0.0079 2.7E-07 46.4 3.2 30 146-176 81-110 (203)
78 2bx2_L Ribonuclease E, RNAse E 94.8 0.015 5.1E-07 50.9 3.1 33 146-178 45-79 (517)
79 2id0_A Exoribonuclease 2; RNAs 94.3 0.028 9.6E-07 50.5 3.7 34 145-178 557-593 (644)
80 3aev_A Translation initiation 94.2 0.0029 1E-07 51.2 -2.7 61 5-65 39-106 (275)
81 1jjg_A M156R; beta barrel, S1 93.5 0.25 8.7E-06 33.0 6.2 63 53-119 27-94 (102)
82 1k0r_A NUSA; two component arr 92.0 0.077 2.6E-06 44.4 2.6 42 138-179 122-170 (366)
83 2wp8_J Exosome complex exonucl 91.1 0.11 3.7E-06 48.9 2.9 31 147-177 887-918 (977)
84 2nn6_H Exosome complex exonucl 90.6 0.12 4.1E-06 42.3 2.4 35 141-175 90-124 (308)
85 2k4k_A GSP13, general stress p 90.0 0.35 1.2E-05 34.3 4.2 26 22-47 54-79 (130)
86 2vnu_D Exosome complex exonucl 89.0 0.19 6.6E-06 45.9 2.7 31 148-178 671-702 (760)
87 3cw2_C Translation initiation 87.9 0.059 2E-06 43.2 -1.3 42 5-46 39-84 (266)
88 2rf4_A DNA-directed RNA polyme 86.2 4.6 0.00016 31.0 8.7 64 52-120 123-203 (214)
89 3d0f_A Penicillin-binding 1 tr 78.2 5.6 0.00019 26.7 5.8 52 56-112 31-93 (106)
90 1h95_A CSD, Y-box binding prot 66.4 17 0.00057 23.1 5.6 34 82-115 32-65 (79)
91 2bti_A Carbon storage regulato 59.5 11 0.00037 23.3 3.4 32 98-131 9-40 (63)
92 2jpp_A Translational repressor 58.5 11 0.00036 23.8 3.4 31 99-131 8-38 (70)
93 2nn6_G Exosome complex exonucl 56.2 7.9 0.00027 31.2 3.1 37 141-177 122-158 (289)
94 1vpz_A Carbon storage regulato 52.8 14 0.00047 23.5 3.2 32 98-131 19-50 (73)
95 2yty_A Cold shock domain-conta 50.9 24 0.0008 23.0 4.3 48 58-114 15-67 (88)
96 2do3_A Transcription elongatio 50.8 8.8 0.0003 24.1 2.0 16 96-111 11-26 (69)
97 3aqq_A Calcium-regulated heat 48.9 62 0.0021 23.2 6.6 47 59-116 60-114 (147)
98 3i4o_A Translation initiation 48.1 17 0.00058 23.4 3.2 59 59-126 18-77 (79)
99 2asb_A Transcription elongatio 47.5 24 0.00083 27.8 4.5 73 104-180 6-91 (251)
100 3a0j_A Cold shock protein; OB- 46.6 50 0.0017 20.5 5.3 31 82-116 24-54 (73)
101 1c9o_A CSPB, cold-shock protei 45.7 48 0.0016 20.0 5.1 31 82-116 24-54 (66)
102 2ytx_A Cold shock domain-conta 41.8 33 0.0011 22.7 3.9 28 82-114 40-67 (97)
103 1wfq_A UNR protein; beta-barre 41.6 70 0.0024 20.7 7.6 51 57-116 14-69 (89)
104 3i2z_B RNA chaperone, negative 41.1 52 0.0018 20.2 4.6 31 82-116 29-59 (71)
105 2k5n_A Putative cold-shock pro 40.2 66 0.0023 20.0 7.5 39 82-129 26-64 (74)
106 1t3o_A Carbon storage regulato 37.6 16 0.00053 24.4 1.7 32 98-131 28-59 (95)
107 3h8z_A FragIle X mental retard 37.4 60 0.0021 22.7 4.9 53 58-113 14-71 (128)
108 3cam_A Cold-shock domain famil 33.1 83 0.0028 19.1 6.2 31 82-116 25-55 (67)
109 2p9r_A Alpha-2-M, alpha-2-macr 30.4 34 0.0012 22.2 2.6 19 100-118 10-28 (102)
110 3kf6_B Protein TEN1; OB fold, 29.0 59 0.002 22.0 3.5 34 3-43 6-41 (105)
111 1g6p_A Cold shock protein TMCS 28.9 75 0.0026 19.1 3.8 29 82-114 23-51 (66)
112 3ts2_A Protein LIN-28 homolog 26.1 1.7E+02 0.006 20.6 6.5 41 82-128 40-80 (148)
113 1ynx_A Replication factor-A pr 25.1 82 0.0028 21.0 3.8 32 33-65 47-78 (114)
114 2rf4_A DNA-directed RNA polyme 23.3 46 0.0016 25.2 2.5 35 143-177 126-160 (214)
115 3ulj_A LIN28B, DNA-binding pro 22.9 1.6E+02 0.0055 19.0 6.4 31 82-116 39-69 (90)
116 2lss_A Cold shock-like protein 26.9 20 0.00068 22.2 0.0 30 82-115 28-57 (70)
117 1d7q_A Translation initiation 21.1 2.3E+02 0.0078 20.1 5.8 51 69-129 46-96 (143)
118 3r8s_K 50S ribosomal protein L 20.7 2.2E+02 0.0074 19.7 6.2 51 102-174 32-87 (122)
119 3kf8_B Protein TEN1; OB fold; 20.6 32 0.0011 24.0 0.9 42 1-46 6-48 (123)
No 1
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.90 E-value=3.1e-25 Score=171.14 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=96.6
Q ss_pred CCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEeec
Q 030172 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (182)
Q Consensus 56 ~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~ 130 (182)
+++|+++.|+ +||+||+|...+| ++||||+|+++|.++.++++.|++||.|+|+|+++|+++++|.||+|++
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g---~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~ 89 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNN---IEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRV 89 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTT---EEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCC---cEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4899999999 9999999942245 9999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHhhhcCCCCceeEeeEeeecC-CeeEEecCCChhhhchhhh
Q 030172 131 EEDPLLETLEKVIPQDGSVISDSSSMSSS-NSNTIEPLPGLGAIFEELL 178 (182)
Q Consensus 131 ~~~p~~~~~~~~~~~~g~~v~G~V~~v~~-~G~fV~l~~gv~gl~~~~~ 178 (182)
.++||....++|+. |+.++|.|+++++ || |++.+|++||+|.+.
T Consensus 90 ~~~p~~~~~~~~~~--g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~ 134 (182)
T 1kl9_A 90 SPEEAIKCEDKFTK--SKTVYSILRHVAEVLE--YTKDEQLESLFQRTA 134 (182)
T ss_dssp CHHHHHHHHHHHHH--HHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTH
T ss_pred CcChHHHHHHhccC--CCEEEEEEEEchhhcC--CcccCChhheEEeee
Confidence 99999999999988 9999999999998 99 899999999999863
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.89 E-value=4.7e-23 Score=169.10 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=116.3
Q ss_pred cCCCeEEEEEEEEeCCCCEEEEEechhHHhhhhcCCCCCCEEEEE------eEeEEEEEecCCCceeEEEEEEccCcCCc
Q 030172 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWD 94 (182)
Q Consensus 21 ~vG~~v~~~v~~~d~~~~~i~lS~k~~~~~~~~~~~~~G~iv~g~------~~G~fV~l~~~~g~~~~~glv~~sels~~ 94 (182)
.+|+++++.|. .|. ++++.+|.+. +.+++|+++.|+ ++||||+++.+ | .++|||+||++|.
T Consensus 41 ~vGdevev~v~-~d~-~~r~iat~~~-------p~~~~G~~~~g~V~~v~~~~GaFVdiG~~-~---~d~lvp~sel~~~ 107 (285)
T 3go5_A 41 TVGDTVKGFAY-TDM-KQKLRLTTLE-------VTATQDQFGWGRVTEVRKDLGVFVDTGLP-D---KEIVVSLDILPEL 107 (285)
T ss_dssp CTTSEEEEEEE-ECT-TSCEEEECSC-------CCSCSSSCEEEEEEEEETTTEEEEECSCT-T---CCEEEEGGGSCSS
T ss_pred ccCCEEEEEEE-ECC-CCCEEEeccc-------ccccCCCEEEEEEEEEccCceEEEEECCC-C---cEEEEEHHHCCcc
Confidence 68999999995 354 5677777664 568999999998 38999999721 3 7999999999986
Q ss_pred cccCccccccCCCEEEEEEEEEeCCCCeEEEEEeec-cCCchhHHHhhhcCCCCceeEeeEeeecCCeeEE-ecCCChhh
Q 030172 95 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL-EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTI-EPLPGLGA 172 (182)
Q Consensus 95 ~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~-~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV-~l~~gv~g 172 (182)
+.. .+++||.+.|+ +.+|+ ++||.+|+|+. ..+||....+++.+ |+.++|+|+++++||+|| .+++|++|
T Consensus 108 ~~~----~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~--G~~V~g~V~~i~~~G~fV~~i~~g~~G 179 (285)
T 3go5_A 108 KEL----WPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQ--NQNWPAIVYRLKLSGTFVYLPENNMLG 179 (285)
T ss_dssp GGG----SCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCSCCT--TCEEEEEEEEEETTEEEEEETTTTEEE
T ss_pred ccc----ccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhhCCC--CCEEEEEEEEEeCCcEEEEEeCCCeEE
Confidence 532 36899999766 59998 79999999976 46899887788887 999999999999999999 99999999
Q ss_pred hchhhhh
Q 030172 173 IFEELLQ 179 (182)
Q Consensus 173 l~~~~~~ 179 (182)
|||....
T Consensus 180 lih~SEl 186 (285)
T 3go5_A 180 FIHPSER 186 (285)
T ss_dssp EECGGGC
T ss_pred EEEHHHc
Confidence 9998754
No 3
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.82 E-value=6.4e-22 Score=151.76 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=93.7
Q ss_pred CCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEeecc
Q 030172 57 NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (182)
Q Consensus 57 ~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~ 131 (182)
++|+++.|+ +||+||+|...+| ++||||+|++++.++.++++.|++||.|+|+|+++|+++++|.||+|++.
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~ 90 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVS 90 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecC
Confidence 489999999 9999999942235 99999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHhhhcCCCCceeEeeEeeec-CCeeEEecCCChhhhchhhhhc
Q 030172 132 EDPLLETLEKVIPQDGSVISDSSSMSS-SNSNTIEPLPGLGAIFEELLQE 180 (182)
Q Consensus 132 ~~p~~~~~~~~~~~~g~~v~G~V~~v~-~~G~fV~l~~gv~gl~~~~~~~ 180 (182)
++||....++|+. |+.+.|+|++++ ++|+ .+.+.+..+...|.++
T Consensus 91 ~~~~~~~~~~~~~--g~~v~g~V~~i~~~~G~--~~e~~~~~~~~~l~~~ 136 (175)
T 2a19_A 91 SEDIIKCEEKYQK--SKTVHSILRYCAEKFQI--PLEELYKTIAWPLSRK 136 (175)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHTTC--CHHHHHHHTHHHHHHH
T ss_pred cChHHHHHHhccC--CCcceEEEEEchhhcCC--CHHHHHHHHHHHHHHH
Confidence 9999999999988 999999999999 6997 3434555554444443
No 4
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.79 E-value=8.5e-21 Score=156.87 Aligned_cols=113 Identities=25% Similarity=0.410 Sum_probs=101.5
Q ss_pred CCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEeec
Q 030172 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (182)
Q Consensus 56 ~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~ 130 (182)
+++|+++.|+ +||+||+|+.++| ++||||+|+++|.++.++.+.|++||.|.|+|+++|+++++|.||+|++
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~g---veGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNN---IEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTS---CCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCC---eEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 4689999999 9999999952234 9999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHhhhcCCCCceeEeeEeeecC-CeeEEecCCChhhhch
Q 030172 131 EEDPLLETLEKVIPQDGSVISDSSSMSSS-NSNTIEPLPGLGAIFE 175 (182)
Q Consensus 131 ~~~p~~~~~~~~~~~~g~~v~G~V~~v~~-~G~fV~l~~gv~gl~~ 175 (182)
.++||....+++.. |+.+.|+|+++.+ ||+|++ ++...|..
T Consensus 88 ~~~p~~~~~~~~~~--G~~v~G~V~~v~~~~G~fi~--~~~e~l~~ 129 (308)
T 1q8k_A 88 SPEEAIKCEDKFTK--SKTVYSILRHVAEVLEYTKD--EQLESLFQ 129 (308)
T ss_dssp CHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTCCSS--HHHHHHHH
T ss_pred ccChHHHHHHHccC--CCeeEEEEEEcccccCCccC--CCHHHHHH
Confidence 99999999999988 9999999999999 799986 45554443
No 5
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.76 E-value=3.5e-20 Score=151.21 Aligned_cols=119 Identities=25% Similarity=0.419 Sum_probs=105.8
Q ss_pred CCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEee
Q 030172 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (182)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~ 129 (182)
.+++|+++.|+ +||+||+|+..+| ++||||+|++++.++.++.+.|++||.|.|+|+++|++++++.||+|+
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~g---ieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~ 84 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPG---KEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRR 84 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTT---CEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCC---eEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 35689999999 9999999963235 999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHHhhhcCCCCceeEeeEeeec-CCeeEEecCCChhhhchhhhhc
Q 030172 130 LEEDPLLETLEKVIPQDGSVISDSSSMSS-SNSNTIEPLPGLGAIFEELLQE 180 (182)
Q Consensus 130 ~~~~p~~~~~~~~~~~~g~~v~G~V~~v~-~~G~fV~l~~gv~gl~~~~~~~ 180 (182)
+.++||....++|.. |+.+.|.|+++. ++|++++ +++.++...|..+
T Consensus 85 ~~~~~~~~~~~~~~~--g~~v~g~v~~v~~~~G~~~e--e~~~~~~w~l~~~ 132 (275)
T 3aev_A 85 VTQQQRKAKLQEFKR--AQKAENLLRLAAEKLGKDFE--AAWREVWVPLEEE 132 (275)
T ss_dssp CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCCHH--HHHHHTHHHHHHH
T ss_pred cCcchhHHHHHhccC--CCeEEEEEEEchhhcCCCHH--HHHHHHHHHHHHH
Confidence 999999999999988 999999999999 8998654 6777776666544
No 6
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.76 E-value=1.9e-18 Score=141.76 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=104.2
Q ss_pred CCCCCCCccHHHhhhhcCCCeEEEEEEEEeCCCCEEEEEech----hHHhhhhcCCCCCCEEEEE-----eEeEEE-EEe
Q 030172 5 HSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD----AVWNKYSSRVNVEDIFVGR-----DYGAFI-HLR 74 (182)
Q Consensus 5 ~~~p~~e~~~~~~~~~~vG~~v~~~v~~~d~~~~~i~lS~k~----~~~~~~~~~~~~G~iv~g~-----~~G~fV-~l~ 74 (182)
.|+|.+|+++.+...-.+|+++.+. +.+|+ ++|+.+|+|. .+|.....++++|+++.|+ ++|+|| .++
T Consensus 97 ~lvp~sel~~~~~~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~ 174 (285)
T 3go5_A 97 IVVSLDILPELKELWPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPE 174 (285)
T ss_dssp EEEEGGGSCSSGGGSCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETT
T ss_pred EEEEHHHCCcccccccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeC
Confidence 4799999998765555799999755 69998 6899999963 4677777899999999999 999999 985
Q ss_pred cCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEeeccCCchhHHHhh
Q 030172 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141 (182)
Q Consensus 75 ~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~~~p~~~~~~~ 141 (182)
+| ++||||.||++. .+++||.|+|+|+++|++++||.||+|+....++...++.
T Consensus 175 --~g---~~Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a~~ 228 (285)
T 3go5_A 175 --NN---MLGFIHPSERYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQM 228 (285)
T ss_dssp --TT---EEEEECGGGCSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHHHH
T ss_pred --CC---eEEEEEHHHccc--------cCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHHHH
Confidence 55 999999999984 4899999999999999989999999999887777665543
No 7
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.76 E-value=9.2e-19 Score=125.58 Aligned_cols=90 Identities=37% Similarity=0.667 Sum_probs=80.2
Q ss_pred hHHhhhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCc-cccCccccccCCCEEEEEEEEEeCCC
Q 030172 47 AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREK 120 (182)
Q Consensus 47 ~~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~-~~~~~~~~~~~Gd~v~vkV~~id~~~ 120 (182)
.+|+....++++|+++.|+ ++|+||+|+ +| ++||||++++++. +..++.+.|++||.|+|+|+++|.++
T Consensus 19 ~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~--~~---~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~ 93 (115)
T 2khi_A 19 SHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE--EG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEER 93 (115)
T ss_dssp --CCCSSCSSCSSCEEEEEEEEEETTEEEEECS--TT---CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTT
T ss_pred CCHHHHhhcCCCCCEEEEEEEEEECCEEEEEEC--CC---CEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCC
Confidence 4787777889999999999 999999996 45 9999999999984 78889999999999999999999989
Q ss_pred CeEEEEEeeccCCchhHHHhh
Q 030172 121 SRITLSIKQLEEDPLLETLEK 141 (182)
Q Consensus 121 ~ki~lS~k~~~~~p~~~~~~~ 141 (182)
++|.||+|++.++||+.+.++
T Consensus 94 ~rI~lslk~~~~~p~~~~~~~ 114 (115)
T 2khi_A 94 RRISLGLKQCKANPWQQFAET 114 (115)
T ss_dssp TEEEECCCCCCSSCCCCCCCC
T ss_pred CEEEEEEEecCcCHHHHHHhh
Confidence 999999999999999876544
No 8
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.67 E-value=8.3e-17 Score=110.11 Aligned_cols=77 Identities=31% Similarity=0.418 Sum_probs=69.2
Q ss_pred hcCCCCCCEEEEE----eEeEEEEEecCCCceeEEEEEEcc-CcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEE
Q 030172 53 SSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (182)
Q Consensus 53 ~~~~~~G~iv~g~----~~G~fV~l~~~~g~~~~~glv~~s-els~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~ 127 (182)
+...++|+++.|+ +||+||+|...+| ++||||+| ++++.++.++++.+ +||.|+|+|+++|+++++|.||+
T Consensus 6 y~~~~vG~~~~G~V~v~~fG~FVel~~~~~---~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lsl 81 (88)
T 1luz_A 6 YSLPNAGDVIKGRVYEKDYALYIYLFDYPH---FEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNY 81 (88)
T ss_dssp SCCCCTTCEEEEEEEEETTEEEEEETTCTT---SEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEE
T ss_pred ecCCCCCCEEEEEEEEEccEEEEEECCCCC---eEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEE
Confidence 4567899999998 9999999963225 99999999 99999999999999 99999999999999999999999
Q ss_pred eeccCC
Q 030172 128 KQLEED 133 (182)
Q Consensus 128 k~~~~~ 133 (182)
|++.++
T Consensus 82 k~~~~~ 87 (88)
T 1luz_A 82 KRMCRH 87 (88)
T ss_dssp EEECSC
T ss_pred eecCCC
Confidence 998664
No 9
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.66 E-value=2e-16 Score=115.75 Aligned_cols=117 Identities=32% Similarity=0.499 Sum_probs=90.1
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEe
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k 128 (182)
..+++|++|.|+ ++|+||+|. +| ++||||++++++.++.++.+.|++||.|+|+|+++|.++++|.||+|
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~--~~---~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALD--EE---TQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEE--TT---EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEEC--CC---cEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 468999999999 999999997 55 99999999999999999999999999999999999998999999999
Q ss_pred eccCCchhHHHhhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 129 ~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.+.++|+......-.+ ..+..........| |-.|++.+..++.+.+.
T Consensus 78 ~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~g-~~~~~~~l~~~~k~s~~ 124 (130)
T 2k4k_A 78 ATQAAPEKKESKPRKP---KAAQVSEEASTPQG-FNTLKDKLEEWIEMSNR 124 (130)
T ss_dssp HHHHSCCCCSCCTTTT---CTTCCSCCCSCSSS-SSCCCSTTCCCSSCCCC
T ss_pred ecccCccccccccccc---cccccccccccccC-CCCHHHHHHHHHHHhhh
Confidence 9998887531110000 00100111112334 88888999988876553
No 10
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.65 E-value=1.5e-16 Score=112.97 Aligned_cols=81 Identities=32% Similarity=0.531 Sum_probs=74.9
Q ss_pred hHHhhhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCC
Q 030172 47 AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS 121 (182)
Q Consensus 47 ~~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ 121 (182)
.+|+.+...+++|+++.|+ ++|+||+|+ +| ++||||++++++.++.++.+.|++||.|+|+|+++|++++
T Consensus 20 ~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~--~~---~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ 94 (109)
T 2khj_A 20 HMFNNWVALNKKGAIVTGKVTAVDAKGATVELA--DG---VEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNR 94 (109)
T ss_dssp -CHHHHTTTCCSSSEEEEEEEEECSSCEEEECS--TT---CBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTT
T ss_pred CHHHHHhhcCCCCCEEEEEEEEEECCeEEEEEC--CC---CEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCC
Confidence 5899998999999999999 999999996 45 9999999999999999999999999999999999999888
Q ss_pred eEEEEEeeccC
Q 030172 122 RITLSIKQLEE 132 (182)
Q Consensus 122 ki~lS~k~~~~ 132 (182)
++.||+|.+.+
T Consensus 95 ki~LS~k~~~~ 105 (109)
T 2khj_A 95 AISLSVRAKDE 105 (109)
T ss_dssp EEEEETTSSSS
T ss_pred EEEEEEeecCh
Confidence 99999998754
No 11
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-17 Score=117.02 Aligned_cols=89 Identities=27% Similarity=0.351 Sum_probs=77.9
Q ss_pred hHHhhhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCC-
Q 030172 47 AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK- 120 (182)
Q Consensus 47 ~~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~- 120 (182)
.+|+.+...+++|++|.|+ +||+||+|... + .+||||++++++.++.++.+.|++||.|+|+|+++|+++
T Consensus 11 ~~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~-~---~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~ 86 (119)
T 2cqo_A 11 GRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGC-R---KQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKND 86 (119)
T ss_dssp CCCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTC-S---SCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSS
T ss_pred cchhhhhcccCCCCEEEEEEEEEeCceEEEEECCC-c---EEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEecccc
Confidence 3566677789999999999 99999999411 2 699999999999999999999999999999999999754
Q ss_pred -CeEEEEEeeccCCchhHHH
Q 030172 121 -SRITLSIKQLEEDPLLETL 139 (182)
Q Consensus 121 -~ki~lS~k~~~~~p~~~~~ 139 (182)
++|.||+|++.++||+...
T Consensus 87 ~~~i~LSlk~~~~~~~~~~~ 106 (119)
T 2cqo_A 87 RIKVSLSMKVVNQGTGKDLD 106 (119)
T ss_dssp CEEEEEESTTBCSSSCCBSC
T ss_pred CceEEEEEeecccCCccccC
Confidence 6999999999999997643
No 12
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=109.72 Aligned_cols=81 Identities=26% Similarity=0.553 Sum_probs=71.4
Q ss_pred hcCCCCCCEEEEE-----eEeEEEEEecC-CCceeEEEEEEccCc-CCccccCccccccCCCEEEEEEEEEeCCCCeEEE
Q 030172 53 SSRVNVEDIFVGR-----DYGAFIHLRFP-DGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125 (182)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~-~g~~~~~glv~~sel-s~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~l 125 (182)
...+++|+++.|+ +||+||+|... ++ ++||||++++ ++.++.++.+.|++||.|+|+|+++|+ ++|.|
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~---~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~L 81 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKR---WEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSL 81 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSC---CEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCC---eEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEE
Confidence 3578999999999 99999999631 15 9999999999 667788999999999999999999996 69999
Q ss_pred EEeeccCCchhHH
Q 030172 126 SIKQLEEDPLLET 138 (182)
Q Consensus 126 S~k~~~~~p~~~~ 138 (182)
|+|++.++||...
T Consensus 82 Slk~~~~~~~~~~ 94 (103)
T 2eqs_A 82 SMKDVDQETGEDL 94 (103)
T ss_dssp ESTTBCTTTCCBC
T ss_pred EEeecccCCchhc
Confidence 9999999999654
No 13
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.61 E-value=4.1e-15 Score=99.80 Aligned_cols=69 Identities=32% Similarity=0.511 Sum_probs=62.4
Q ss_pred CCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEee
Q 030172 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (182)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~ 129 (182)
++++|+++.|+ ++|+||+|+ ++ ++||||++++++.++ +.|++||.|+|+|+++|++++++.||+|.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~--~~---~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLN--EQ---VRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEE--TT---EEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEEC--CC---CEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 57899999999 999999997 45 999999999998775 67999999999999999988999999998
Q ss_pred ccC
Q 030172 130 LEE 132 (182)
Q Consensus 130 ~~~ 132 (182)
+.+
T Consensus 73 ~~~ 75 (80)
T 2k52_A 73 LEH 75 (80)
T ss_dssp CC-
T ss_pred ccc
Confidence 765
No 14
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.58 E-value=8.5e-17 Score=130.72 Aligned_cols=104 Identities=27% Similarity=0.386 Sum_probs=92.2
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEe
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k 128 (182)
..+++|+++.|+ +||+||+|+.++| ++||||+|++++.++.++++.|++||.|.|+|+++|++++++.||+|
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~---~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk 83 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGG---LQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLK 83 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTS---EECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEEST
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCC---eEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 357899999999 9999999953234 99999999999999999999999999999999999998999999999
Q ss_pred eccCCchhHHHhhhcCCCCceeEeeEeeec-CCee
Q 030172 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSS-SNSN 162 (182)
Q Consensus 129 ~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~-~~G~ 162 (182)
.+..+||....+++.. |+.+.|.|+.+. ..|.
T Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~iv~~lae~~~~ 116 (266)
T 3cw2_C 84 KVTDDERRKKNLQWKK--IQRLDKILELVSQKLKL 116 (266)
T ss_dssp TSCTTHHHHHHHHHHH--HHHHHHHHHHHHHHTTC
T ss_pred ecchhhHHHHHHhccc--cCccceeeeehhhhCCC
Confidence 9999999999999987 777888888776 3443
No 15
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.41 E-value=1.5e-14 Score=131.06 Aligned_cols=103 Identities=28% Similarity=0.478 Sum_probs=2.1
Q ss_pred EEeCCCCEEEEEech--------hHHhhhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccC
Q 030172 32 QANEEMKKLVFSEKD--------AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 98 (182)
Q Consensus 32 ~~d~~~~~i~lS~k~--------~~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~ 98 (182)
++++ .+.+.++... +.++.+...+++|++|.|+ +||+||+|. +| ++||||+|++++.++.+
T Consensus 604 di~d-dG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~--~g---~eGLvHiSels~~rv~~ 677 (726)
T 4aid_A 604 DIND-DGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFF--GA---KDGLVHVSQISNERVAK 677 (726)
T ss_dssp -----------CCSCHHHHHHHHHC-------------------------------------------------------
T ss_pred eEEC-CceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEEC--CC---cEEEEEHHHcCcccccC
Confidence 4553 4665555432 1355566789999999999 999999996 45 99999999999999999
Q ss_pred ccccccCCCEEEEEEEEEeCCCCeEEEEEeeccCCchhHHHhh
Q 030172 99 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141 (182)
Q Consensus 99 ~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~~~p~~~~~~~ 141 (182)
+.+.|++||.|+|+|+++|+ ++||.||+|.+.++|+.....+
T Consensus 678 ~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~~G~~~~~k 719 (726)
T 4aid_A 678 PSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQETGEDLSKK 719 (726)
T ss_dssp -------------------------------------------
T ss_pred ccccCCCCCEEEEEEEEECC-CCcEEEEEeecccCcchhhhhh
Confidence 99999999999999999998 8999999999999998776433
No 16
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.36 E-value=5.7e-14 Score=127.52 Aligned_cols=101 Identities=30% Similarity=0.560 Sum_probs=0.0
Q ss_pred EEeCCCCEEEEEech--------hHHhhhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccC
Q 030172 32 QANEEMKKLVFSEKD--------AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD 98 (182)
Q Consensus 32 ~~d~~~~~i~lS~k~--------~~~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~ 98 (182)
+++. .+.+.++... +.++.+..++++|++|.|+ +||+||+|. +| ++||||+|++++.++.+
T Consensus 594 dI~~-dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~--~g---~eGLvHiSel~~~~v~~ 667 (723)
T 3cdi_A 594 EIED-DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG--GG---KEGLVHISQIADKRVEK 667 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecC-CccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeC--CC---ceEEEEHHHcCCccccC
Confidence 4444 4566555442 1344556789999999999 999999996 45 99999999999999999
Q ss_pred ccccccCCCEEEEEEEEEeCCCCeEEEEEeeccCCchhHHH
Q 030172 99 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139 (182)
Q Consensus 99 ~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~~~p~~~~~ 139 (182)
+.+.|++||.|+|+|+++|+ +++|.||+|.+.++||....
T Consensus 668 ~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~~g~~~~ 707 (723)
T 3cdi_A 668 VTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAA 707 (723)
T ss_dssp -----------------------------------------
T ss_pred cccccCCCCEEEEEEEEECC-CCcEEEEEEeccCCCCcccC
Confidence 99999999999999999998 99999999999888886643
No 17
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.34 E-value=1.2e-14 Score=132.47 Aligned_cols=104 Identities=21% Similarity=0.416 Sum_probs=37.3
Q ss_pred EEeCCCCEEEEEechh--------HHhhhh--cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCc----C
Q 030172 32 QANEEMKKLVFSEKDA--------VWNKYS--SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV----S 92 (182)
Q Consensus 32 ~~d~~~~~i~lS~k~~--------~~~~~~--~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sel----s 92 (182)
+++. .+.+.+|.... .++.+. ..+++|++|.|+ +||+||+|. +| ++||||+|++ +
T Consensus 632 dI~~-dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~--~g---~eGLvHiSel~~~~s 705 (757)
T 1e3p_A 632 TIED-DGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLL--PG---KDGLLHISQIRKLAG 705 (757)
T ss_dssp ---------CCCBSSHHHHCC---------------------CBEEECC-CSCEECCC--------CCCCC---------
T ss_pred EecC-CceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccccEEEEEEc--CC---cEEEEEhHHhccccC
Confidence 5554 57787776541 223334 678899999999 999999996 45 9999999999 9
Q ss_pred CccccCccccccCCCEEEEEEEEEeCCCCeEEEEEeeccCCchhHHHhhh
Q 030172 93 WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142 (182)
Q Consensus 93 ~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~~~p~~~~~~~~ 142 (182)
|.++.++.+.|++||.|+|+|+++|+ ++||.||+|.+.++||.....++
T Consensus 706 ~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~pw~~~~~~~ 754 (757)
T 1e3p_A 706 GKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVIEGEEAASDEKKDD 754 (757)
T ss_dssp ----------CCSSCBCCCCCCCCCS-SCC--------------------
T ss_pred CCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEecCCCCchhhhhhcc
Confidence 99999999999999999999999998 99999999999999998766554
No 18
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.32 E-value=2.2e-12 Score=99.49 Aligned_cols=79 Identities=27% Similarity=0.505 Sum_probs=67.5
Q ss_pred hhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCcccc-----------CccccccCCCEEEEEEE
Q 030172 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-----------DIRDILNEGDEVRVKVI 114 (182)
Q Consensus 51 ~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~-----------~~~~~~~~Gd~v~vkV~ 114 (182)
.....+.+|+++.|+ ++|+||+|+ + .+||+|++++++.++. ++.+.|++||.|+|+|+
T Consensus 74 ~i~~~~~~Gev~~G~V~~v~~~G~fV~l~---~---~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~ 147 (187)
T 1go3_E 74 TLVYIPEMYELIEGEVVDVVEFGSFVRLG---P---LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIV 147 (187)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEECS---S---SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEE
T ss_pred EEEEccCCCCEEEEEEEEEeCcEEEEEEc---C---ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEE
Confidence 345678999999999 999999995 2 8999999999988765 78899999999999999
Q ss_pred EEeCCCC-----eEEEEEeeccCCch
Q 030172 115 KIDREKS-----RITLSIKQLEEDPL 135 (182)
Q Consensus 115 ~id~~~~-----ki~lS~k~~~~~p~ 135 (182)
++|.+++ ++.||+|+....|+
T Consensus 148 ~vd~~~~~p~~~~I~lS~k~~~LG~~ 173 (187)
T 1go3_E 148 AISLKAERKRGSKIALTMRQPYLGKL 173 (187)
T ss_dssp EEECCC-----CEEEEECCSTTCEEH
T ss_pred EEEcccCCCCccEEEEEEcCCCCCcH
Confidence 9998654 99999998665443
No 19
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.29 E-value=3.1e-12 Score=98.05 Aligned_cols=80 Identities=28% Similarity=0.566 Sum_probs=65.7
Q ss_pred HhhhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccc-----------cCccccccCCCEEEEE
Q 030172 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----------QDIRDILNEGDEVRVK 112 (182)
Q Consensus 49 ~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~-----------~~~~~~~~~Gd~v~vk 112 (182)
+.....++.+|+++.|+ ++|+||+++ . .+||+|++++.+.+. ++..+.|++||.|+||
T Consensus 72 ~~~iv~~p~~Gev~~G~V~~v~~~G~fv~l~---~---~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~Vrvk 145 (180)
T 4ayb_E 72 FDMITYVPVVQEVVEGEVLQVDNYGVFVNLG---P---MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRAR 145 (180)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECS---S---SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEE
T ss_pred hheeeeeccCCCEEEEEEeeeccceEEEEEC---C---ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEE
Confidence 34455689999999999 999999995 2 899999999999876 4777889999999999
Q ss_pred EEEEeCC----CCeEEEEEeeccCCc
Q 030172 113 VIKIDRE----KSRITLSIKQLEEDP 134 (182)
Q Consensus 113 V~~id~~----~~ki~lS~k~~~~~p 134 (182)
|+++|.+ ..+|.||+|+.-.-+
T Consensus 146 V~~v~~~~~~~~~rI~ls~k~~gLG~ 171 (180)
T 4ayb_E 146 VISVASTVTGRLPRIALTMRQPYLGK 171 (180)
T ss_dssp EEEECC-------CEEEECCSTTCEE
T ss_pred EEEEeCCCCcccCcEEEEcCCCCCCC
Confidence 9999863 458999999854333
No 20
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.26 E-value=4.7e-12 Score=90.88 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=62.7
Q ss_pred hcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCc-CCccccCccccccCCCEEEEEEEEEeCCCCeEEEE
Q 030172 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (182)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sel-s~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS 126 (182)
..++++|+++.|+ +||+||+|+ .++ ..+++|.++. +|.+..++.+.|++||.|+|+|+++|.+++++.||
T Consensus 16 ~~~l~~G~i~~G~V~~v~~fG~fV~l~-~~~---~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 16 AEALKPGMLLTGTVSSLEDHGYLVDIG-VDG---TRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp TTTCCTTCEEEEEEEEECSSEEEEECC-CSS---CEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEE
T ss_pred HhcCCCCCEEEEEEEEEeCceEEEEEC-CCC---eEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 3679999999999 999999996 234 7777776664 34445688899999999999999999988999999
Q ss_pred EeeccC
Q 030172 127 IKQLEE 132 (182)
Q Consensus 127 ~k~~~~ 132 (182)
+|+...
T Consensus 92 lk~~~l 97 (119)
T 1wi5_A 92 VGHSEV 97 (119)
T ss_dssp CCCCCS
T ss_pred Echhhc
Confidence 997643
No 21
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.1e-11 Score=117.49 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=68.6
Q ss_pred hcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCcc-ccCccccccCCCEEEEEEEEEeCCCCeEEEE
Q 030172 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (182)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~-~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS 126 (182)
..++++|+++.|+ +||+||+|+ .| ++||||+|++++.+ +.++.+.|++||.|+|+|+++|.++++|.||
T Consensus 897 ~~~l~~G~iv~G~V~~V~~fGaFV~L~--~g---veGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LS 971 (1219)
T 3psi_A 897 EKTFFKGSIIPVRVERFWHNDIICTTN--SE---VECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 971 (1219)
T ss_dssp TTTSCTTCEEEEEEEEECSSCEEEECT--TS---CEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEE
T ss_pred HhhCCCCCEEEEEEEEEecceEEEEeC--CC---ceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 3689999999999 999999996 56 99999999999998 8999999999999999999999999999999
Q ss_pred Eeecc
Q 030172 127 IKQLE 131 (182)
Q Consensus 127 ~k~~~ 131 (182)
+|...
T Consensus 972 lk~~d 976 (1219)
T 3psi_A 972 LLDHD 976 (1219)
T ss_dssp CCHHH
T ss_pred ecHHH
Confidence 99553
No 22
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.15 E-value=7.1e-12 Score=114.55 Aligned_cols=74 Identities=28% Similarity=0.544 Sum_probs=67.8
Q ss_pred hcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEE
Q 030172 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (182)
Q Consensus 53 ~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~ 127 (182)
..++++|+++.|+ +||+||+|+ .+ ++||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+
T Consensus 649 ~~~l~vG~iv~G~V~~V~~fGaFV~l~--~~---~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSl 723 (785)
T 3bzc_A 649 LKDLKPGMVLEGVVTNVTNFGAFVDIG--VH---QDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSM 723 (785)
T ss_dssp STTCCTTCBCCCEEEEEETTEEEEECS--SS---SEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECC
T ss_pred hhhcCCCCEEEEEEEEEecCCeEEEeC--CC---cEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEE
Confidence 3568899999888 999999996 45 8999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 030172 128 KQLE 131 (182)
Q Consensus 128 k~~~ 131 (182)
|...
T Consensus 724 k~~~ 727 (785)
T 3bzc_A 724 RMSD 727 (785)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 9654
No 23
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.15 E-value=6.3e-11 Score=92.93 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=65.4
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCC---ceeEEEEEEccCcCCcccc--CccccccCCCEEEEEEEEEeCCCCeE
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDG---LYHLTGLVHVSEVSWDLIQ--DIRDILNEGDEVRVKVIKIDREKSRI 123 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g---~~~~~glv~~sels~~~~~--~~~~~~~~Gd~v~vkV~~id~~~~ki 123 (182)
..+++|++|.|+ ++|+||+|...++ ..+.+|+||++|+++.+.. ++++.|++||.|+|+|++++..++++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 468999999999 9999999952210 0027899999999999888 99999999999999999999866789
Q ss_pred EEEEeec
Q 030172 124 TLSIKQL 130 (182)
Q Consensus 124 ~lS~k~~ 130 (182)
.||+|+.
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999975
No 24
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.12 E-value=6.2e-12 Score=117.63 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCcc-ccCccccccCCCEEEEEEEEEeCCCCeEEEEE
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~-~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~ 127 (182)
.++++|+++.|+ +||+||+|+ .| ++||||+|++++.+ +.++.+.|++||.|+|+|+++|.++++|.||+
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~--~g---veGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSl 975 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTN--SE---VECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSL 975 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeC--CC---cEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEe
Confidence 678999999999 999999996 46 99999999999998 89999999999999999999999999999999
Q ss_pred eecc
Q 030172 128 KQLE 131 (182)
Q Consensus 128 k~~~ 131 (182)
|...
T Consensus 976 k~~d 979 (1030)
T 3psf_A 976 LDHD 979 (1030)
T ss_dssp ----
T ss_pred chHH
Confidence 9664
No 25
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.09 E-value=2e-10 Score=87.98 Aligned_cols=68 Identities=26% Similarity=0.390 Sum_probs=60.3
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecC--------CCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCC
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFP--------DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~--------~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~ 120 (182)
..++ |++|.|+ ++|+||+|... ++ .+|+||++++++.+..++++.|++||.|+|+|++
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~---~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----- 124 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNR---GIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----- 124 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTC---EEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccC---eeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----
Confidence 3567 9999999 99999999731 03 8999999999999999999999999999999998
Q ss_pred CeEEEEEeec
Q 030172 121 SRITLSIKQL 130 (182)
Q Consensus 121 ~ki~lS~k~~ 130 (182)
+++.||+|+.
T Consensus 125 ~~i~LS~k~~ 134 (179)
T 3m7n_A 125 DNLRLSTKEE 134 (179)
T ss_dssp TTTEEECCST
T ss_pred CeEEEEEecC
Confidence 7899999864
No 26
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=99.04 E-value=4.8e-11 Score=99.73 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=78.6
Q ss_pred CCCCccHHH----hhhhcCCCeEEEEEEEEeCCCCEEEEEechhH--------HhhhhcCCC--CCCEEEEE-----eEe
Q 030172 8 KEPQKSIHE----IAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--------WNKYSSRVN--VEDIFVGR-----DYG 68 (182)
Q Consensus 8 p~~e~~~~~----~~~~~vG~~v~~~v~~~d~~~~~i~lS~k~~~--------~~~~~~~~~--~G~iv~g~-----~~G 68 (182)
|..++++.+ .....+|+++.+.|...|.. +....+.|+.. .+..+..++ .|+++.|+ ++|
T Consensus 71 ~~~~Isl~ea~~~d~~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~ 149 (344)
T 1hh2_P 71 PATQISLEEAKKIDPLAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEW 149 (344)
T ss_dssp TTSCEEHHHHHHHCTTCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSE
T ss_pred cccEEeHHHHhhhCccccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCc
Confidence 444566654 24456999999999777653 33444434321 222345555 89999999 889
Q ss_pred EEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCC--eEEEEEee
Q 030172 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKS--RITLSIKQ 129 (182)
Q Consensus 69 ~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~--ki~lS~k~ 129 (182)
+||+++ + .+|++|.+|++ |.+.|++||.|+|.|++++.+++ ++.||.+.
T Consensus 150 v~VDlG---k---~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~ 200 (344)
T 1hh2_P 150 ADIRIG---K---LETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRV 200 (344)
T ss_dssp EEEEET---T---EEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSS
T ss_pred EEEEeC---C---eEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeec
Confidence 999995 4 99999999987 56789999999999999997655 56666653
No 27
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.01 E-value=3e-10 Score=86.34 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=53.1
Q ss_pred hhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCc----------cccccCCCEEEEEEEE
Q 030172 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKVIK 115 (182)
Q Consensus 51 ~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~----------~~~~~~Gd~v~vkV~~ 115 (182)
....+..+|+++.|+ +||+||+++ . .+||||+|++++.+.-++ ++.+++||.|+|+|++
T Consensus 76 ~~~~~~~~Gev~~G~V~~v~~fG~FV~l~---~---~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (171)
T 1y14_B 76 AVVFKPFKGEVVDGTVVSCSQHGFEVQVG---P---MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (171)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEEET---T---EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEE
T ss_pred EEEccCCCCCEEEEEEEEEecCEEEEEec---C---eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEE
Confidence 345678899999999 999999995 2 899999999986543222 2679999999999999
Q ss_pred EeCCCC
Q 030172 116 IDREKS 121 (182)
Q Consensus 116 id~~~~ 121 (182)
+|.+++
T Consensus 150 vd~~~~ 155 (171)
T 1y14_B 150 CISQVS 155 (171)
T ss_dssp EEEETT
T ss_pred EEcCCC
Confidence 998664
No 28
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.96 E-value=3.7e-10 Score=79.71 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=40.6
Q ss_pred EEEEeeccCCchhHHHhhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 124 ~lS~k~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.-|+|++.++||+.+...+.+ |+++.|+|+++.+||+||++.+|++||||....
T Consensus 11 ~~~iKq~~~~p~~~~~~~~~~--G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel 64 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVALNKK--GAIVTGKVTAVDAKGATVELADGVEGYLRASEA 64 (109)
T ss_dssp ----------CHHHHTTTCCS--SSEEEEEEEEECSSCEEEECSTTCBCCBCTTCC
T ss_pred ccchhhcccCHHHHHhhcCCC--CCEEEEEEEEEECCeEEEEECCCCEEEEEHHHc
Confidence 458999999999998888877 999999999999999999999999999997643
No 29
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.93 E-value=1.7e-10 Score=103.97 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=80.0
Q ss_pred CCCCCCCCCCccHHHhhhhcCCCeEEEEEEEEeCCCCE-EEEEec--hh---------HHhhhhcCCCCCC--EEEEE--
Q 030172 2 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKK-LVFSEK--DA---------VWNKYSSRVNVED--IFVGR-- 65 (182)
Q Consensus 2 ~p~~~~p~~e~~~~~~~~~~vG~~v~~~v~~~d~~~~~-i~lS~k--~~---------~~~~~~~~~~~G~--iv~g~-- 65 (182)
||+| +|+|+-.|+.++.++...-.. ... ... -.+|.+ .+ .|...+.+-++|+ ++.|+
T Consensus 497 SPIR--RY~DLivHR~l~a~l~~~~~~---~~~--~~~~~~~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~~f~g~V~ 569 (644)
T 2id0_A 497 SPIR--KYGDMINHRLLKAVIKGETAT---RPQ--DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIV 569 (644)
T ss_dssp CTTT--BHHHHHHHHHHHHHTTC-------CCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCCCEEEEEE
T ss_pred Chhh--cchHHHHHHHHHHHHcCCCCC---ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEEE
Confidence 8999 999999999888876443111 000 010 011111 11 2223344567888 88887
Q ss_pred ---eEeEEEEEecCCCceeEEEEEEccCcCC--ccc----------cCccccccCCCEEEEEEEEEeCCCCeEEEEEe
Q 030172 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLI----------QDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (182)
Q Consensus 66 ---~~G~fV~l~~~~g~~~~~glv~~sels~--~~~----------~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k 128 (182)
++|+||+|.. .| ++||||++++++ .+. .+..+.|++||.|+|+|.++|.++++|.+++.
T Consensus 570 ~V~~~G~fV~L~~-~g---ieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~l~ 643 (644)
T 2id0_A 570 DISRGGMRVRLVD-NG---AIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 (644)
T ss_dssp EEETTEEEEEETT-TC---CEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEEEC
T ss_pred EEeCCceEEEEcC-Cc---EEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEEEc
Confidence 9999999952 35 999999999973 221 14456799999999999999999999999874
No 30
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.93 E-value=1.3e-09 Score=85.77 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=61.9
Q ss_pred hhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCcc----------ccccCCCEEEEEEEE
Q 030172 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR----------DILNEGDEVRVKVIK 115 (182)
Q Consensus 51 ~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~----------~~~~~Gd~v~vkV~~ 115 (182)
......++|+++.|+ +||+||+|+ + .+||||+++|++.+..++. +.+++||.|+|+|++
T Consensus 76 ~i~~~p~vGev~~G~V~~vt~fG~FVelg-~-----~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 76 AVVFKPFKGEVVDGTVVSCSQHGFEVQVG-P-----MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp EEEECCCTTEEEEEEEEEEETTEEEEECT-T-----SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred hheeccCCCCEEEEEEEEEecceEEEEec-C-----cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEE
Confidence 345678999999999 999999995 1 8999999999865443332 679999999999999
Q ss_pred EeCCCC---eEEEEEeeccCCch
Q 030172 116 IDREKS---RITLSIKQLEEDPL 135 (182)
Q Consensus 116 id~~~~---ki~lS~k~~~~~p~ 135 (182)
+|.+++ ++. |+|+....||
T Consensus 150 vd~~~~~i~~Ig-Smk~~~LG~~ 171 (215)
T 2b8k_G 150 CISQVSSIHAIG-SIKEDYLGAI 171 (215)
T ss_dssp EEEETTEEEEEE-ECCSTTCEEC
T ss_pred EEcCCCccEEEE-EcCCCCCCCc
Confidence 998764 666 8887655444
No 31
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.92 E-value=1.9e-09 Score=81.89 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=56.1
Q ss_pred hhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCc------------cccccCCCEEEEEEE
Q 030172 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI------------RDILNEGDEVRVKVI 114 (182)
Q Consensus 52 ~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~------------~~~~~~Gd~v~vkV~ 114 (182)
...+..+|+++.|+ +||+||+++ . .+||||+++|++.+.-++ .+.|++||.|+|||+
T Consensus 75 ~~~~~~~Gev~~G~V~~v~~fG~fV~l~---~---~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~ 148 (172)
T 2c35_B 75 IVFRPFKGEVVDAVVTQVNKVGLFTEIG---P---MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIV 148 (172)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEET---T---EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEE
T ss_pred EEeeCCCCCEEEEEEEEEeCCEEEEEEC---C---EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEE
Confidence 34578899999999 999999995 2 789999999986533222 557999999999999
Q ss_pred EEeCCCC---eEEEEEee
Q 030172 115 KIDREKS---RITLSIKQ 129 (182)
Q Consensus 115 ~id~~~~---ki~lS~k~ 129 (182)
++|.+++ ++. |+|+
T Consensus 149 ~vd~~~~~~~~ig-sm~~ 165 (172)
T 2c35_B 149 GTRVDKNDIFAIG-SLMD 165 (172)
T ss_dssp EEEEETTEEEEEE-ECCS
T ss_pred EEEcCCCCcEEEE-EecC
Confidence 9998655 444 6654
No 32
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.88 E-value=1.6e-09 Score=87.12 Aligned_cols=70 Identities=26% Similarity=0.381 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccc---cCccccccCCCEEEEEEEEEeCCCCeEEE
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI---QDIRDILNEGDEVRVKVIKIDREKSRITL 125 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~---~~~~~~~~~Gd~v~vkV~~id~~~~ki~l 125 (182)
..+++|++|.|+ ++|+||+|+ .+ .+|+||++++++.+. .++++.|++||.|.|+|++++. .+++.|
T Consensus 70 y~p~~GDiV~G~V~~v~~~ga~VdI~--~~---~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~L 143 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIYGWVVDIK--AP---YKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVL 143 (251)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECS--SS---SCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEcC--CC---eEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEE
Confidence 367999999999 899999997 23 899999999998877 8889999999999999999996 579999
Q ss_pred EEee
Q 030172 126 SIKQ 129 (182)
Q Consensus 126 S~k~ 129 (182)
|+|+
T Consensus 144 S~r~ 147 (251)
T 2je6_I 144 SVKG 147 (251)
T ss_dssp ECCS
T ss_pred EEcc
Confidence 9875
No 33
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.83 E-value=6.9e-09 Score=82.35 Aligned_cols=70 Identities=26% Similarity=0.351 Sum_probs=62.1
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCc-cccCccccccCCCEEEEEEEEEeCCCCeEEEEE
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~-~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~ 127 (182)
..+++||+|.|+ ++|+||+|+. . .+|++|+++++.. +..++++.|++||.|.|+|++++. .+++.||+
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~--~---~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~ 126 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYS--P---YQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTM 126 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSS--S---SCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEEC
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCC--C---eEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEE
Confidence 357999999999 8999999962 3 8999999999974 678899999999999999999996 68999998
Q ss_pred ee
Q 030172 128 KQ 129 (182)
Q Consensus 128 k~ 129 (182)
|+
T Consensus 127 r~ 128 (229)
T 2ba0_A 127 KD 128 (229)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 34
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.80 E-value=1.3e-09 Score=77.69 Aligned_cols=53 Identities=8% Similarity=-0.019 Sum_probs=38.0
Q ss_pred EEEEeeccCCchhHHHhhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhh
Q 030172 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELL 178 (182)
Q Consensus 124 ~lS~k~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~ 178 (182)
.-|+|++..+||+.....+.. |+++.|+|+++.+||+||++.+|++||||...
T Consensus 10 ~~~~k~~~~~p~~~~~~~~~~--G~~~~G~V~~v~~~G~FV~l~~~~~Glvhise 62 (115)
T 2khi_A 10 HSSGLVPRGSHWVAIAKRYPE--GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSE 62 (115)
T ss_dssp -----------CCCSSCSSCS--SCEEEEEEEEEETTEEEEECSTTCEEEEETTS
T ss_pred ccchhhcccCCHHHHhhcCCC--CCEEEEEEEEEECCEEEEEECCCCEEEEEHHH
Confidence 348899999999987767776 99999999999999999999999999999654
No 35
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.79 E-value=1.4e-09 Score=82.81 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=58.3
Q ss_pred HhhhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccC----------ccccccCCCEEEEEE
Q 030172 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQD----------IRDILNEGDEVRVKV 113 (182)
Q Consensus 49 ~~~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~----------~~~~~~~Gd~v~vkV 113 (182)
......+...|+++.|+ ++|+||+++ . .+||||+++|++.+.-+ ..+.+++||.|+|||
T Consensus 75 f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~---~---~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 75 YRAVLWRPFRGEVVDAIVTTVNKMGFFANIG---P---LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEEEEECCCTTCEEECCCCEEETTEEECCBT---T---BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEE
T ss_pred EEEeeeccCCCCEEEEEEEEEEcceEEEEeC---C---eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEE
Confidence 44456789999999999 999999995 2 78999999997654433 356899999999999
Q ss_pred EEEeCCCC---eEEEEEe
Q 030172 114 IKIDREKS---RITLSIK 128 (182)
Q Consensus 114 ~~id~~~~---ki~lS~k 128 (182)
+++|.+.+ +|. |+|
T Consensus 149 ~~vd~~~~~~~~Ig-tm~ 165 (172)
T 3h0g_G 149 VGTRTDATEIFAIA-TMK 165 (172)
T ss_dssp EEEEESSSCEEEEE-ECC
T ss_pred EEEECCCCCceEEE-EcC
Confidence 99998764 444 555
No 36
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.77 E-value=5.2e-09 Score=83.39 Aligned_cols=70 Identities=17% Similarity=0.352 Sum_probs=60.9
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCc----cccCccccccCCCEEEEEEEEEeCCCCeEE
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LIQDIRDILNEGDEVRVKVIKIDREKSRIT 124 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~----~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~ 124 (182)
..+++|++|.|+ ++|+||+|+ .+ .+|++|+++++.. +..++++.|++||.|.|+|++++. .+++.
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~--~~---~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~ 135 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDIN--SP---YVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPL 135 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECS--SS---SCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEE
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeC--CC---eEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEE
Confidence 467999999999 899999997 23 8999999999863 457888999999999999999996 56899
Q ss_pred EEEee
Q 030172 125 LSIKQ 129 (182)
Q Consensus 125 lS~k~ 129 (182)
||+|+
T Consensus 136 LS~k~ 140 (235)
T 2z0s_A 136 LTVQG 140 (235)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 99874
No 37
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.63 E-value=3.7e-08 Score=68.52 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=54.5
Q ss_pred CCCCCEEEEE--------eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEE
Q 030172 56 VNVEDIFVGR--------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (182)
Q Consensus 56 ~~~G~iv~g~--------~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~ 127 (182)
...++.++|+ .|| |+.-.. +| .++|+|++++.+...
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~-gg---~dvfvH~s~l~~~~~------------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDD-GS---KDVFVHFSAGSSGAA------------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESS-SS---CEEEEECCCSCSSSC-------------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCC-CC---cEEEEEEEEEecCCc-------------------------------
Confidence 3455667777 578 887641 24 899999999987632
Q ss_pred eeccCCchhHHHhhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhh
Q 030172 128 KQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELL 178 (182)
Q Consensus 128 k~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~ 178 (182)
....... |+.+++.|+++.+||+||+|.++++||||-..
T Consensus 55 ----------~~~~l~~--Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~ 93 (101)
T 2bh8_A 55 ----------VRGNPQQ--GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSD 93 (101)
T ss_dssp ----------CCCCCCT--TCEEEEEEEECCSEEEEECTTSCEEEEEEEEE
T ss_pred ----------cccCCCC--CCEEEEEEEEeCCcEEEEEcCCCceEEEEHHH
Confidence 0122334 99999999999999999999999999998653
No 38
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.54 E-value=1.2e-09 Score=100.13 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=69.3
Q ss_pred CCCCCCCCCCccHHHhhhhcCCCeEE-EEEEEEeCCCCEE-----EEEec--hh---------HHhhhhcCCCCCCEEEE
Q 030172 2 SPSHSCKEPQKSIHEIAKGLTGSIIS-VKVIQANEEMKKL-----VFSEK--DA---------VWNKYSSRVNVEDIFVG 64 (182)
Q Consensus 2 ~p~~~~p~~e~~~~~~~~~~vG~~v~-~~v~~~d~~~~~i-----~lS~k--~~---------~~~~~~~~~~~G~iv~g 64 (182)
||+| +|+|+-.|+.++.+++..-. -.. .....+ .+|.+ .+ .|...+.+-+. +++.|
T Consensus 603 SPIR--RY~DLivHR~L~~~l~~~~~~~~~----~~~~~l~~~~~~~s~~er~A~~aer~~~~~~~~~~l~~~~-~~~~g 675 (760)
T 2vnu_D 603 SPIR--RYCDVVAHRQLAGAIGYEPLSLTH----RDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNE-STETG 675 (760)
T ss_dssp CTTT--BHHHHHHHHHHHHHTTSSCCCGGG----GCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-SEEEE
T ss_pred chHh--hhHHHHHHHHHHHHHccCCCcccc----cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc-eEEEE
Confidence 8999 99999999988887754310 000 000000 00101 01 12222223344 68888
Q ss_pred E-----eEeEEEEEecCCCceeEEEEEEccCcC--Cccc-----------cC----ccccccCCCEEEEEEEEEeCC---
Q 030172 65 R-----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKIDRE--- 119 (182)
Q Consensus 65 ~-----~~G~fV~l~~~~g~~~~~glv~~sels--~~~~-----------~~----~~~~~~~Gd~v~vkV~~id~~--- 119 (182)
+ ++|+||.|.. .| ++|+||+++++ ..+. .+ ..+.|++||.|+|+|+.+|.+
T Consensus 676 ~V~~V~~~G~fV~l~~-~g---iEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~~ 751 (760)
T 2vnu_D 676 YVIKVFNNGIVVLVPK-FG---VEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITS 751 (760)
T ss_dssp EEEEEETTEEEEEETT-TT---EEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC--------
T ss_pred EEEEEECCeEEEEEeC-CC---cEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECcccc
Confidence 7 9999999962 26 99999999996 3331 22 257899999999999999987
Q ss_pred CCeEEEEEe
Q 030172 120 KSRITLSIK 128 (182)
Q Consensus 120 ~~ki~lS~k 128 (182)
++||.||+|
T Consensus 752 ~~kI~lslk 760 (760)
T 2vnu_D 752 KRKAELLLK 760 (760)
T ss_dssp CCEEEC---
T ss_pred CCcEEEEeC
Confidence 699999986
No 39
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.7e-09 Score=101.15 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=76.6
Q ss_pred CCCCCCCCCCccHHHhhhhcCCCeEEEEEEEEeCCCCEE-----EEEech--h---------HHhhhhcCCCCCCEEEEE
Q 030172 2 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKL-----VFSEKD--A---------VWNKYSSRVNVEDIFVGR 65 (182)
Q Consensus 2 ~p~~~~p~~e~~~~~~~~~~vG~~v~~~v~~~d~~~~~i-----~lS~k~--~---------~~~~~~~~~~~G~iv~g~ 65 (182)
||+| +|+|+-.|+.++.+++..-.-. .......+ .+|.++ + .|...+.+-+ |+++.|+
T Consensus 820 SPIR--RY~DLivHR~L~a~L~~~~~~~---~~~~~~~l~~i~~~~s~~er~A~~aeR~~~~~~~~~~l~~~-ge~~~g~ 893 (977)
T 2wp8_J 820 SPIR--RYCDVVAHRQLAGAIGYEPLSL---THRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNN-ESTETGY 893 (977)
T ss_dssp CTTT--BHHHHHHHHHHHHHTTSSCCCG---GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred chHh--hHHHHHHHHHHHHHhcCCCCcc---cccCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhccc-ceEEEEE
Confidence 8999 9999999998888775431000 00000000 001110 1 1222222334 8898888
Q ss_pred -----eEeEEEEEecCCCceeEEEEEEccCcC--Cccc-----------cC----ccccccCCCEEEEEEEEEeCC---C
Q 030172 66 -----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKIDRE---K 120 (182)
Q Consensus 66 -----~~G~fV~l~~~~g~~~~~glv~~sels--~~~~-----------~~----~~~~~~~Gd~v~vkV~~id~~---~ 120 (182)
++|+||.|.. .| ++|+||+++++ ..+. .+ ..+.|++||.|+|+|..+|.+ +
T Consensus 894 V~~V~~~G~fV~L~~-~g---iEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~~~~ 969 (977)
T 2wp8_J 894 VIKVFNNGIVVLVPK-FG---VEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSK 969 (977)
T ss_dssp EEEECSSEEEEECTT-TC---CEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSSSCC
T ss_pred EEEEcCCeEEEEEcC-CC---eEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcccCC
Confidence 9999999962 26 99999999997 4331 12 357899999999999999863 3
Q ss_pred CeEEEEEe
Q 030172 121 SRITLSIK 128 (182)
Q Consensus 121 ~ki~lS~k 128 (182)
+||.||+|
T Consensus 970 ~kI~Lslk 977 (977)
T 2wp8_J 970 RKAELLLK 977 (977)
T ss_dssp CCCCEEEC
T ss_pred CceEEEeC
Confidence 89999987
No 40
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.39 E-value=3.1e-07 Score=71.52 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=52.6
Q ss_pred hhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccc-------------------cCccccccCCC
Q 030172 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-------------------QDIRDILNEGD 107 (182)
Q Consensus 52 ~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~-------------------~~~~~~~~~Gd 107 (182)
...+..+|+++.|+ ++|+||+++ . ++|++|.+++.+.+. .+....|++||
T Consensus 75 ~~f~p~~GEv~~G~Vs~vt~~GifV~lg---~---~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd 148 (203)
T 3ayh_B 75 IIFRPFRGEVMLGKIKSCSEEGIRVTIS---F---FDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDE 148 (203)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEECS---S---CCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTC
T ss_pred EEEccCCCCEEEEEEEEEeccEEEEEEe---C---ceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCC
Confidence 35678999999999 999999995 2 899999999977653 44566799999
Q ss_pred EEEEEEEEEeCCC
Q 030172 108 EVRVKVIKIDREK 120 (182)
Q Consensus 108 ~v~vkV~~id~~~ 120 (182)
.|++||++++...
T Consensus 149 ~VrvrV~~v~~~~ 161 (203)
T 3ayh_B 149 EIRFQIESEDFVD 161 (203)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEEEEEEEEccc
Confidence 9999999998643
No 41
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.8e-07 Score=71.77 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=52.7
Q ss_pred hhhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccc--------------cCccccccCCCEEEE
Q 030172 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--------------QDIRDILNEGDEVRV 111 (182)
Q Consensus 51 ~~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~--------------~~~~~~~~~Gd~v~v 111 (182)
....+..+|+++.|+ ++|+||+|. +- ++|++|++++...+. .+....|++||.|++
T Consensus 74 ~~~f~p~vGEv~~G~Is~Vt~fGifVeL~--g~---~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~Vrv 148 (218)
T 2ckz_B 74 AVVFKPFLGEIVTGWISKCTAEGIKVSLL--GI---FDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRF 148 (218)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEECT--TS---CCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEE
T ss_pred EEEecCCCCCEEEEEEEEEccCcEEEEcc--Cc---cceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEE
Confidence 345688999999999 999999994 22 899999999966543 334567999999999
Q ss_pred EEEEEeCCCC
Q 030172 112 KVIKIDREKS 121 (182)
Q Consensus 112 kV~~id~~~~ 121 (182)
||.++|..++
T Consensus 149 rV~~v~~~~~ 158 (218)
T 2ckz_B 149 RIEREVFVDV 158 (218)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEcccC
Confidence 9999997554
No 42
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.18 E-value=9e-07 Score=72.97 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=56.1
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCc----cc------cCccccccCCCEEEEEEEEEeC
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LI------QDIRDILNEGDEVRVKVIKIDR 118 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~----~~------~~~~~~~~~Gd~v~vkV~~id~ 118 (182)
..+++|++|.|+ ++++||+|+.+ ..+++|++++++. +. .++++.|++||.|.|+|++++.
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~-----~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~ 165 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSR-----LDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS 165 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSS-----SCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCC-----cCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC
Confidence 368899999999 89999999733 6789999998753 12 2455789999999999999995
Q ss_pred CCCeEEEEEee
Q 030172 119 EKSRITLSIKQ 129 (182)
Q Consensus 119 ~~~ki~lS~k~ 129 (182)
.+++.||+|+
T Consensus 166 -~~~i~LStr~ 175 (308)
T 2nn6_H 166 -DGAVSLHTRS 175 (308)
T ss_dssp -TTEEEEECCS
T ss_pred -CCCEEEEecC
Confidence 7899999885
No 43
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.17 E-value=2.7e-06 Score=74.56 Aligned_cols=70 Identities=24% Similarity=0.444 Sum_probs=57.1
Q ss_pred cCCCCCCEEEEE-----eE--eEEEEEecCCCceeEEEEEEccCcCCccc---------cCccccccCCCEEEEEEEEEe
Q 030172 54 SRVNVEDIFVGR-----DY--GAFIHLRFPDGLYHLTGLVHVSEVSWDLI---------QDIRDILNEGDEVRVKVIKID 117 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~--G~fV~l~~~~g~~~~~glv~~sels~~~~---------~~~~~~~~~Gd~v~vkV~~id 117 (182)
....+|.+|.|+ ++ ||||+++ .| ..||+|++++++.++ .++.+.+++||.|.|+|++..
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG--~g---k~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~ 115 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYG--AE---RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEE 115 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESS--SS---SCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeC--CC---cEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeec
Confidence 456799999999 66 9999997 45 899999999988763 345678999999999999988
Q ss_pred CCCCeEEEEEe
Q 030172 118 REKSRITLSIK 128 (182)
Q Consensus 118 ~~~~ki~lS~k 128 (182)
..++...||..
T Consensus 116 ~g~KGa~lTt~ 126 (517)
T 2bx2_L 116 RGNKGAALTTF 126 (517)
T ss_dssp CTTCCCEEESS
T ss_pred cccCCceEEee
Confidence 76666666554
No 44
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.17 E-value=2.8e-06 Score=71.33 Aligned_cols=79 Identities=10% Similarity=0.192 Sum_probs=56.7
Q ss_pred hcCCC--CCCEEEEE-e--------EeEEEEEecC-CCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCC
Q 030172 53 SSRVN--VEDIFVGR-D--------YGAFIHLRFP-DGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK 120 (182)
Q Consensus 53 ~~~~~--~G~iv~g~-~--------~G~fV~l~~~-~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~ 120 (182)
+..++ .|+++.|+ . .++||+|+.. .+ .+|++|.+|+. |.+.|++||.|+|.|++++.+.
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k---~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~ 193 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKA---SEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGA 193 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSC---EEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCS
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccc---eEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCC
Confidence 44555 99999999 2 5899999720 13 89999999987 4688999999999999999876
Q ss_pred CeEEEEEeeccCCchhHHHh
Q 030172 121 SRITLSIKQLEEDPLLETLE 140 (182)
Q Consensus 121 ~ki~lS~k~~~~~p~~~~~~ 140 (182)
+...+.+..+.++.....++
T Consensus 194 kgpqI~LSRT~p~lv~~Lfe 213 (366)
T 1k0r_A 194 REPLITLSRTHPNLVRKLFS 213 (366)
T ss_dssp SSCEEEEESSCHHHHHHHHH
T ss_pred CccEEEEEeCChHHHHHHHH
Confidence 55555555554555444443
No 45
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=9.5e-07 Score=63.10 Aligned_cols=48 Identities=4% Similarity=-0.087 Sum_probs=38.7
Q ss_pred ccCCchhHHHhhhcCCCCceeEeeEeeecCCeeEEecCC-Chhhhchhhhh
Q 030172 130 LEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP-GLGAIFEELLQ 179 (182)
Q Consensus 130 ~~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~~-gv~gl~~~~~~ 179 (182)
+.+++|......+.. |+++.|+|+++.+||+||+|.+ +++||||-...
T Consensus 8 ~~~~~~~~~~~~~~v--G~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel 56 (119)
T 2cqo_A 8 MNSGRPETMENLPAL--YTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHM 56 (119)
T ss_dssp SCCCCCCCSCCSCCT--TCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHH
T ss_pred ccccchhhhhcccCC--CCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHC
Confidence 356778776655555 9999999999999999999954 46999997653
No 46
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.04 E-value=2.8e-06 Score=56.24 Aligned_cols=34 Identities=6% Similarity=-0.043 Sum_probs=31.3
Q ss_pred CCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.|+++.|+|+++.+||+||++.+|++||||....
T Consensus 5 ~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel 38 (80)
T 2k52_A 5 PGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDM 38 (80)
T ss_dssp TTCEEEEEEEEEETTEEEEEEETTEEEEECGGGC
T ss_pred CCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHC
Confidence 3999999999999999999999999999997654
No 47
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.00 E-value=1.1e-05 Score=61.27 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=56.3
Q ss_pred CCCCCCEEEEE-----eEeEEEEEec-CCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEe
Q 030172 55 RVNVEDIFVGR-----DYGAFIHLRF-PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (182)
Q Consensus 55 ~~~~G~iv~g~-----~~G~fV~l~~-~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k 128 (182)
.+++||+|.|+ ..+++|+|+. + ..|++|++++. ....+.+..|++||.|.|+|.+++. .+.+.||..
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~-----~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc~ 76 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFS-----SSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIECF 76 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTS-----CCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEESS
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCC-----ccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEec
Confidence 57899999999 7889999973 2 78999999886 3356788889999999999999986 567888843
No 48
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.97 E-value=8.5e-06 Score=56.44 Aligned_cols=71 Identities=28% Similarity=0.399 Sum_probs=48.7
Q ss_pred cCCCeEEEEEEEEeCCCCEEEEEech----------hHHhhhh--cCCCCCCEEEEE-----eEeEEEEEecCCCceeEE
Q 030172 21 LTGSIISVKVIQANEEMKKLVFSEKD----------AVWNKYS--SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLT 83 (182)
Q Consensus 21 ~vG~~v~~~v~~~d~~~~~i~lS~k~----------~~~~~~~--~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~ 83 (182)
..++..+-+|..+|..++.=.++... +....-. ..+++|++|.+. +||+||+|. ++ ++
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~--~~---~e 86 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLD--GG---ID 86 (101)
T ss_dssp ----CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTT--SC---EE
T ss_pred cccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcC--CC---ce
Confidence 35677888999888766543333221 1111112 579999999999 899999995 45 99
Q ss_pred EEEEccCcCCccc
Q 030172 84 GLVHVSEVSWDLI 96 (182)
Q Consensus 84 glv~~sels~~~~ 96 (182)
||||+|+++|.++
T Consensus 87 Glvhis~i~~~~~ 99 (101)
T 2bh8_A 87 GLVHLSDISWAQA 99 (101)
T ss_dssp EEEEEEEEEECCC
T ss_pred EEEEHHHCccCcC
Confidence 9999999998764
No 49
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=97.94 E-value=7.7e-09 Score=79.35 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=65.4
Q ss_pred CCCCCCCccHHH--hhhh-c-CCCeEEEEEEEEeCCCCEEEEEech---hHHhhhhcCCCCCCEEEEE-----e-EeEEE
Q 030172 5 HSCKEPQKSIHE--IAKG-L-TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----D-YGAFI 71 (182)
Q Consensus 5 ~~~p~~e~~~~~--~~~~-~-vG~~v~~~v~~~d~~~~~i~lS~k~---~~~~~~~~~~~~G~iv~g~-----~-~G~fV 71 (182)
.|++.+++++.. .... + +|++|.++|+.+|++++++.+|.++ .+|.....+++.|+.+.|. + +| +
T Consensus 43 GLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v 120 (182)
T 1kl9_A 43 GMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE--Y 120 (182)
T ss_dssp EEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred EEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcChHHHHHHhccCCCEEEEEEEEchhhcC--C
Confidence 357778887653 2222 2 8999999999999999999999986 5788888889999998888 5 99 7
Q ss_pred EEecCCCceeEEEEEEccCcCCcc-ccC
Q 030172 72 HLRFPDGLYHLTGLVHVSEVSWDL-IQD 98 (182)
Q Consensus 72 ~l~~~~g~~~~~glv~~sels~~~-~~~ 98 (182)
+|. +| ++||+|+++++|.+ +.+
T Consensus 121 ~l~--~g---iegl~h~s~~~~~~~~~~ 143 (182)
T 1kl9_A 121 TKD--EQ---LESLFQRTAWVFDDKYKR 143 (182)
T ss_dssp CSH--HH---HHHHHHHTHHHHHHHHTC
T ss_pred ccc--CC---hhheEEeeecchhhhcCC
Confidence 775 45 99999999887753 444
No 50
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.93 E-value=4.9e-07 Score=82.56 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=34.0
Q ss_pred eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEeeccCCchhHHHhhhcCC
Q 030172 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145 (182)
Q Consensus 66 ~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~~~p~~~~~~~~~~~ 145 (182)
++|+||+|+ -+|.+|++..++.......+.+ +.. .+| ..+.+
T Consensus 626 ~~G~~IdI~-------~dG~v~Is~~~~~~~~~a~~~i------------------------~~i-~~p-----~~~~v- 667 (757)
T 1e3p_A 626 DTGAEITIE-------DDGTIYIGAADGPAAEAARATI------------------------NGI-ANP-----TSPEV- 667 (757)
T ss_dssp CCCSCC---------------CCCBSSHHHHCC-----------------------------------------------
T ss_pred hhCCEEEec-------CCceEEEecCCHHHHHHHHHHH------------------------HHh-cch-----hhccc-
Confidence 899999996 4789999998876543321111 000 123 23444
Q ss_pred CCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
|+++.|+|+++.+||+||+|.+|++||||-...
T Consensus 668 -G~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel 700 (757)
T 1e3p_A 668 -GERILGSVVKTTTFGAFVSLLPGKDGLLHISQI 700 (757)
T ss_dssp ------CBEEECC-CSCEECCC---CCCCC----
T ss_pred -ccEEEEEEEEccccEEEEEEcCCcEEEEEhHHh
Confidence 999999999999999999999999999997653
No 51
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=97.87 E-value=7.9e-06 Score=55.18 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCCceeEeeEeeecCCeeEEecC--CChhhhchhh
Q 030172 145 QDGSVISDSSSMSSSNSNTIEPL--PGLGAIFEEL 177 (182)
Q Consensus 145 ~~g~~v~G~V~~v~~~G~fV~l~--~gv~gl~~~~ 177 (182)
..|+++.|+|+ +++||+||+|. +|++||+|-.
T Consensus 10 ~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis 43 (88)
T 1luz_A 10 NAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAES 43 (88)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGG
T ss_pred CCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEee
Confidence 45999999999 99999999997 4899999976
No 52
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=8.2e-06 Score=56.63 Aligned_cols=34 Identities=3% Similarity=-0.130 Sum_probs=31.2
Q ss_pred CCceeEeeEeeecCCeeEEecCC---Chhhhchhhhh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLP---GLGAIFEELLQ 179 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~---gv~gl~~~~~~ 179 (182)
.|+++.|+|+++.+||+||++.+ +++||||-...
T Consensus 12 vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel 48 (103)
T 2eqs_A 12 IGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISEL 48 (103)
T ss_dssp TTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGT
T ss_pred CCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHC
Confidence 49999999999999999999986 99999997764
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.82 E-value=2.5e-06 Score=77.59 Aligned_cols=37 Identities=8% Similarity=-0.037 Sum_probs=0.0
Q ss_pred hhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 141 ~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.+.+ |+++.|+|+++.+||+||++.+|++||+|-...
T Consensus 624 ~~~v--G~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel 660 (723)
T 3cdi_A 624 EIEV--GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI 660 (723)
T ss_dssp ---------------------------------------
T ss_pred hhhc--CcEEEEEEEEEecceEEEEeCCCceEEEEHHHc
Confidence 4444 999999999999999999999999999996643
No 54
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.66 E-value=0.00019 Score=57.22 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCCCCCEEEEE-e--------EeEEEEEec-CCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCC--Ce
Q 030172 55 RVNVEDIFVGR-D--------YGAFIHLRF-PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK--SR 122 (182)
Q Consensus 55 ~~~~G~iv~g~-~--------~G~fV~l~~-~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~--~k 122 (182)
.-+.|+++.|+ . ..+||+|+. .++ .+|++|.+|+. |.+.|++||.|+|.|++++... .+
T Consensus 4 ~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k---~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpq 74 (251)
T 2asb_A 4 STREGEIVAGVIQRDSRANARGLVVVRIGTETKA---SEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPL 74 (251)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSC---EEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCE
T ss_pred hhcCCCEEEEEEEEccccccCCeEEEEeCCCCcc---eEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCE
Confidence 45689999998 2 269999972 013 89999999976 5688999999999999998754 68
Q ss_pred EEEEEeec
Q 030172 123 ITLSIKQL 130 (182)
Q Consensus 123 i~lS~k~~ 130 (182)
|.||....
T Consensus 75 IiLSRt~p 82 (251)
T 2asb_A 75 ITLSRTHP 82 (251)
T ss_dssp EEEESSCH
T ss_pred EEEEeccH
Confidence 99998753
No 55
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=97.65 E-value=1.5e-05 Score=56.61 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=36.5
Q ss_pred EEeeccCCchhHHHhhhcCCCCceeEeeEeeecCCeeEEecC-CChhhhchhhh
Q 030172 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPL-PGLGAIFEELL 178 (182)
Q Consensus 126 S~k~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~-~gv~gl~~~~~ 178 (182)
|++....+.+.. .+.+.. |+++.|+|+++++||+||+|. +++.||++.-+
T Consensus 4 sl~P~~vn~~~~-~~~l~~--G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~ 54 (119)
T 1wi5_A 4 GSSGKNVNRVLS-AEALKP--GMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLK 54 (119)
T ss_dssp CCCCSCSSCCCC-TTTCCT--TCEEEEEEEEECSSEEEEECCCSSCEEEEEHHH
T ss_pred ccCHHHhhcccc-HhcCCC--CCEEEEEEEEEeCceEEEEECCCCeEEEEEEec
Confidence 344333444332 235555 999999999999999999998 68888887655
No 56
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=97.56 E-value=7.7e-05 Score=64.81 Aligned_cols=108 Identities=11% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCCCCCCCCCccHHHhhhhcCCCeEEEEEEEEeCCC-----CEEEEEechh---------HHhhhhcCCCCCCEEEEEeE
Q 030172 2 SPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEM-----KKLVFSEKDA---------VWNKYSSRVNVEDIFVGRDY 67 (182)
Q Consensus 2 ~p~~~~p~~e~~~~~~~~~~vG~~v~~~v~~~d~~~-----~~i~lS~k~~---------~~~~~~~~~~~G~iv~g~~~ 67 (182)
||+| +|+|+-.|+.++.++...- .++.+. ..+....+.+ .|...+-.-+.|+.+.
T Consensus 340 SPIR--RY~DLivHr~L~a~l~~~~-----~~~~~~l~~~~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~---- 408 (469)
T 2r7d_A 340 SPMR--RYLDLVVHQQLRAFLAGRD-----PLSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQPERVWD---- 408 (469)
T ss_dssp CTTT--BHHHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEE----
T ss_pred Cccc--ccHHHHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE----
Confidence 8999 9999999998887764430 000000 0000000000 1222233446888887
Q ss_pred eEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEe
Q 030172 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (182)
Q Consensus 68 G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k 128 (182)
|+++++. + .+|+||++++... ......|++||.|+|+|.++|..+++|.+...
T Consensus 409 g~vv~l~---~---~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~~ 461 (469)
T 2r7d_A 409 AVVVDRR---G---AQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARSV 461 (469)
T ss_dssp EEEEEEE---T---TEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred EEEEEEe---C---cEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence 4678875 2 6899999999865 22335699999999999999999999987653
No 57
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.45 E-value=8.2e-05 Score=56.06 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.|+++.|+|+++++||+||++.+ .+||+|-...
T Consensus 83 ~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l 115 (171)
T 1y14_B 83 KGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLM 115 (171)
T ss_dssp TTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGS
T ss_pred CCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHC
Confidence 49999999999999999999988 9999998754
No 58
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.37 E-value=8.3e-06 Score=68.08 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=53.8
Q ss_pred cccCCCEEEEEEEEEeCCCCeEEEEEeeccCCchhH-----HHhhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchh
Q 030172 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLE-----TLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEE 176 (182)
Q Consensus 102 ~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~~~p~~~-----~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~ 176 (182)
.+.+||.+.+.|...|. .+....+.|+.....+.+ ..+.|....|++++|+|.++.++|+||++. +++|++|.
T Consensus 86 ~~~vGd~ie~~I~~~df-gR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~ 163 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNF-GRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLPK 163 (344)
T ss_dssp TCCTTCEEEEECCCCCS-SSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEEG
T ss_pred cccCCCEEEEEEccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeH
Confidence 37899999999987775 333333334432222222 234554345999999999999999999996 99999998
Q ss_pred hhh
Q 030172 177 LLQ 179 (182)
Q Consensus 177 ~~~ 179 (182)
..+
T Consensus 164 sE~ 166 (344)
T 1hh2_P 164 KEW 166 (344)
T ss_dssp GGS
T ss_pred HHc
Confidence 764
No 59
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=97.30 E-value=0.00015 Score=56.76 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=31.0
Q ss_pred CCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 145 QDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 145 ~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
..|+++.|+|+++++||+||++.+ ++||+|-...
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l 115 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLM 115 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGS
T ss_pred CCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHC
Confidence 359999999999999999999988 9999998754
No 60
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=97.09 E-value=0.00031 Score=55.58 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=34.6
Q ss_pred cCCCEEEEEEEE-EeCCCCeEEEEEeeccCCchhHHHhhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 104 NEGDEVRVKVIK-IDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 104 ~~Gd~v~vkV~~-id~~~~ki~lS~k~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
..++.+.+.+.+ ++..+.+..+|++... .+|.+..|++|.|+|+++.++|+||++..+++|++|....
T Consensus 31 ~~~~~I~Asv~G~v~~~~~~~~vsV~p~~--------~~y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei 99 (235)
T 2z0s_A 31 DYKGVKRATVVGLLREKGDGGGRAFVKLK--------EIYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDF 99 (235)
T ss_dssp -------------------------------------CCCCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHH
T ss_pred EECCEEEEEEeEEEEEeCCccEEEEEeCC--------CccCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHh
Confidence 344556666655 2322232334444221 2355667999999999999999999999999999987654
No 61
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=96.98 E-value=0.0004 Score=52.85 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=28.8
Q ss_pred CCCceeEeeEeeecCCeeEEecCCChhhhchhh
Q 030172 145 QDGSVISDSSSMSSSNSNTIEPLPGLGAIFEEL 177 (182)
Q Consensus 145 ~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~ 177 (182)
..|+++.|+|+++.+||+||++.+ ++||+|-.
T Consensus 80 ~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis 111 (187)
T 1go3_E 80 EMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVS 111 (187)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSS-SEEEEEGG
T ss_pred CCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhH
Confidence 359999999999999999999965 99999864
No 62
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=96.97 E-value=0.00053 Score=51.53 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=29.3
Q ss_pred CCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.|+++.|+|+++++||+||++. .++||+|-...
T Consensus 81 ~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l 113 (172)
T 2c35_B 81 KGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSI 113 (172)
T ss_dssp TTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGS
T ss_pred CCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHC
Confidence 4999999999999999999995 57799998754
No 63
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.94 E-value=0.00013 Score=66.40 Aligned_cols=33 Identities=3% Similarity=-0.057 Sum_probs=0.0
Q ss_pred CCceeEeeEeeecCCeeEEecCCChhhhchhhh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELL 178 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~ 178 (182)
.|+++.|+|+++.+||+||+|.+|++||||-..
T Consensus 637 vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSe 669 (726)
T 4aid_A 637 VGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQ 669 (726)
T ss_dssp ---------------------------------
T ss_pred CCcEEEEEEEEEeccEEEEEECCCcEEEEEHHH
Confidence 499999999999999999999999999999653
No 64
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.89 E-value=0.00089 Score=54.57 Aligned_cols=69 Identities=7% Similarity=-0.069 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEe
Q 030172 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (182)
Q Consensus 54 ~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k 128 (182)
..+++||+|.|+ ...+.|+|..+ ..|++|.+++.. ...+.+..|++||.|.|+|++++. .+...||..
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~-----~~a~L~~~~f~G-atk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGS-----EPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSS-----SCCCEESCSSSC-CSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCC-----ceeEEehhhcCc-chhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 357899999999 55689999732 789999998762 356788889999999999999985 567888874
Q ss_pred e
Q 030172 129 Q 129 (182)
Q Consensus 129 ~ 129 (182)
.
T Consensus 196 ~ 196 (289)
T 2nn6_G 196 D 196 (289)
T ss_dssp B
T ss_pred c
Confidence 3
No 65
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00057 Score=65.34 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=33.2
Q ss_pred hhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 140 ~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
+.+.+ |+++.|+|++|++||+||+|++|++||||-...
T Consensus 898 ~~l~~--G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSel 935 (1219)
T 3psi_A 898 KTFFK--GSIIPVRVERFWHNDIICTTNSEVECVVNAQRH 935 (1219)
T ss_dssp TTSCT--TCEEEEEEEEECSSCEEEECTTSCEEEECTTSS
T ss_pred hhCCC--CCEEEEEEEEEecceEEEEeCCCceEEEEHHHc
Confidence 34455 999999999999999999999999999996543
No 66
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.78 E-value=0.0005 Score=51.81 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=30.2
Q ss_pred CCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 144 ~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
+..|++++|+|+++++||+||++. .++||+|....
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l 116 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLV 116 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGS
T ss_pred cCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHC
Confidence 335999999999999999999996 57899997654
No 67
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=96.73 E-value=0.00086 Score=50.70 Aligned_cols=34 Identities=6% Similarity=-0.034 Sum_probs=29.4
Q ss_pred CCCCceeEeeEeeecCCeeEEecCCChhhhchhhh
Q 030172 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELL 178 (182)
Q Consensus 144 ~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~ 178 (182)
+..|+++.|+|+++++||+||++. .++||+|-..
T Consensus 79 p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~ 112 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQ 112 (180)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGG
T ss_pred ccCCCEEEEEEeeeccceEEEEEC-CccceEEeee
Confidence 345999999999999999999995 5999998654
No 68
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=96.71 E-value=0.00085 Score=50.91 Aligned_cols=38 Identities=16% Similarity=-0.030 Sum_probs=33.8
Q ss_pred hhcCCCCceeEeeEeeecCCeeEEecCC----------Chhhhchhhhh
Q 030172 141 KVIPQDGSVISDSSSMSSSNSNTIEPLP----------GLGAIFEELLQ 179 (182)
Q Consensus 141 ~~~~~~g~~v~G~V~~v~~~G~fV~l~~----------gv~gl~~~~~~ 179 (182)
.|.+. |++|.|+|+++.++|+||++.+ +++||+|....
T Consensus 53 ~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei 100 (179)
T 3m7n_A 53 PEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNV 100 (179)
T ss_dssp CCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGT
T ss_pred cccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHc
Confidence 46677 9999999999999999999987 99999997653
No 69
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00022 Score=67.06 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred hhhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 140 ~~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
+.+.+ |+++.|+|++|++||+||+|++|++||||-...
T Consensus 901 ~~l~~--G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSel 938 (1030)
T 3psf_A 901 KTFFK--GSIIPVRVERFWHNDIICTTNSEVECVVNAQRH 938 (1030)
T ss_dssp ----------------------------------------
T ss_pred HHhcC--CCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHc
Confidence 34455 999999999999999999999999999996543
No 70
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.65 E-value=0.00062 Score=62.48 Aligned_cols=34 Identities=6% Similarity=-0.048 Sum_probs=31.0
Q ss_pred CCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.|+++.|+|++|++||+||++..+++||||-...
T Consensus 654 vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~L 687 (785)
T 3bzc_A 654 PGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISAL 687 (785)
T ss_dssp TTCBCCCEEEEEETTEEEEECSSSSEEEEETTTS
T ss_pred CCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHc
Confidence 4999999999999999999999999999986543
No 71
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=96.50 E-value=0.00018 Score=54.53 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=44.2
Q ss_pred CCCCCCCccHHHh--hhh-c-CCCeEEEEEEEEeCCCCEEEEEech---hHHhhhhcCCCCCCEEEEE
Q 030172 5 HSCKEPQKSIHEI--AKG-L-TGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR 65 (182)
Q Consensus 5 ~~~p~~e~~~~~~--~~~-~-vG~~v~~~v~~~d~~~~~i~lS~k~---~~~~~~~~~~~~G~iv~g~ 65 (182)
.|+|.+++++... ... + +|+++.++|+.+|++++++.+|++. .+|.....+++.|+.+.|+
T Consensus 43 GLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~~~~~~~~~~~g~~v~g~ 110 (175)
T 2a19_A 43 GMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSI 110 (175)
T ss_dssp EEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcChHHHHHHhccCCCcceEE
Confidence 4678888887532 222 2 8999999999999999999999986 4788777788888877775
No 72
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=96.37 E-value=4.6e-05 Score=62.78 Aligned_cols=68 Identities=13% Similarity=0.028 Sum_probs=54.5
Q ss_pred CCCCCCCccHHH--hhhh--cCCCeEEEEEEEEeCCCCEEEEEech---hHHhhhhcCCCCCCEEEEE-----e-EeEEE
Q 030172 5 HSCKEPQKSIHE--IAKG--LTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----D-YGAFI 71 (182)
Q Consensus 5 ~~~p~~e~~~~~--~~~~--~vG~~v~~~v~~~d~~~~~i~lS~k~---~~~~~~~~~~~~G~iv~g~-----~-~G~fV 71 (182)
.|++.+++++.. .... -+|+.|.++|+.+|++++++.+|++. .+|......++.|+++.|+ + ||+|+
T Consensus 41 GLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 41 GMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp EEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred EEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccChHHHHHHHccCCCeeEEEEEEcccccCCcc
Confidence 457777877642 1222 28999999999999999999999986 5888888889999998888 5 69987
Q ss_pred E
Q 030172 72 H 72 (182)
Q Consensus 72 ~ 72 (182)
+
T Consensus 121 ~ 121 (308)
T 1q8k_A 121 D 121 (308)
T ss_dssp S
T ss_pred C
Confidence 5
No 73
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=96.36 E-value=0.0024 Score=51.04 Aligned_cols=39 Identities=5% Similarity=-0.102 Sum_probs=34.2
Q ss_pred hhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 141 ~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
.|.+..|++|.|+|+++.++|+||++..+.+|++|-...
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei 107 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNL 107 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHH
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHh
Confidence 355667999999999999999999999999999987654
No 74
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=95.88 E-value=0.0051 Score=47.73 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=30.1
Q ss_pred hcCCCCceeEeeEeeecCCeeEEecC--------CChhhhchhh
Q 030172 142 VIPQDGSVISDSSSMSSSNSNTIEPL--------PGLGAIFEEL 177 (182)
Q Consensus 142 ~~~~~g~~v~G~V~~v~~~G~fV~l~--------~gv~gl~~~~ 177 (182)
|.+..|++|.|+|+++.++|+||++. .+++|++|..
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhis 120 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKE 120 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHH
Confidence 44556999999999999999999973 6889998743
No 75
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.85 E-value=0.0062 Score=47.90 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred hhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhhhh
Q 030172 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ 179 (182)
Q Consensus 141 ~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~~~ 179 (182)
+|.+..|++|.|+|+++.++|+||++....+|++|-+..
T Consensus 52 ~y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev 90 (229)
T 2ba0_A 52 RYTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSEN 90 (229)
T ss_dssp SCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGC
T ss_pred cccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHc
Confidence 355667999999999999999999999889999987654
No 76
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0058 Score=47.77 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=27.5
Q ss_pred CCCceeEeeEeeecCCeeEEecCCChhhhchh
Q 030172 145 QDGSVISDSSSMSSSNSNTIEPLPGLGAIFEE 176 (182)
Q Consensus 145 ~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~ 176 (182)
..|+++.|+|++++++|+||+|.+-++||++-
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~ 111 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIP 111 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEE
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEc
Confidence 35999999999999999999996667887653
No 77
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=95.56 E-value=0.0079 Score=46.39 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=26.4
Q ss_pred CCceeEeeEeeecCCeeEEecCCChhhhchh
Q 030172 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEE 176 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~ 176 (182)
.|+++.|+|++++++|+||+| +.++||++-
T Consensus 81 ~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~ 110 (203)
T 3ayh_B 81 RGEVMLGKIKSCSEEGIRVTI-SFFDDIFIP 110 (203)
T ss_dssp TTCEEEEEEEEEETTEEEEEC-SSCCCEEEE
T ss_pred CCCEEEEEEEEEeccEEEEEE-eCceEEEEc
Confidence 499999999999999999999 578887653
No 78
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=94.85 E-value=0.015 Score=50.93 Aligned_cols=33 Identities=0% Similarity=-0.094 Sum_probs=30.3
Q ss_pred CCceeEeeEeeecCC--eeEEecCCChhhhchhhh
Q 030172 146 DGSVISDSSSMSSSN--SNTIEPLPGLGAIFEELL 178 (182)
Q Consensus 146 ~g~~v~G~V~~v~~~--G~fV~l~~gv~gl~~~~~ 178 (182)
+|.++.|+|+++.++ ||||++.+|-+||+|-..
T Consensus 45 vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhise 79 (517)
T 2bx2_L 45 KANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 79 (517)
T ss_dssp TTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGG
T ss_pred CCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHH
Confidence 499999999999998 999999999999998543
No 79
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=94.33 E-value=0.028 Score=50.51 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=30.0
Q ss_pred CCCc--eeEeeEeeecCCeeEEec-CCChhhhchhhh
Q 030172 145 QDGS--VISDSSSMSSSNSNTIEP-LPGLGAIFEELL 178 (182)
Q Consensus 145 ~~g~--~v~G~V~~v~~~G~fV~l-~~gv~gl~~~~~ 178 (182)
..|+ +++|+|+++.+||+||+| +.|++||+|-..
T Consensus 557 ~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~ 593 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPF 593 (644)
T ss_dssp GTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGG
T ss_pred ccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchh
Confidence 3588 999999999999999999 589999998744
No 80
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=94.16 E-value=0.0029 Score=51.16 Aligned_cols=61 Identities=8% Similarity=-0.054 Sum_probs=44.7
Q ss_pred CCCCCCCccHHH--hhh-h-cCCCeEEEEEEEEeCCCCEEEEEech---hHHhhhhcCCCCCCEEEEE
Q 030172 5 HSCKEPQKSIHE--IAK-G-LTGSIISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR 65 (182)
Q Consensus 5 ~~~p~~e~~~~~--~~~-~-~vG~~v~~~v~~~d~~~~~i~lS~k~---~~~~~~~~~~~~G~iv~g~ 65 (182)
.|+|.++++... ... . -+|+.+.++|+.+|++++++.+|++. .+|.....+++.|+.+.|.
T Consensus 39 GlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~~~~~~~~~~~~g~~v~g~ 106 (275)
T 3aev_A 39 AFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENL 106 (275)
T ss_dssp EEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcchhHHHHHhccCCCeEEEE
Confidence 356777776532 111 2 38999999999999999999999986 4676666667777776666
No 81
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=93.52 E-value=0.25 Score=33.04 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=44.7
Q ss_pred hcCCCCCCEEEEE----eEeEEEEEecCCCceeEEEEEEcc-CcCCccccCccccccCCCEEEEEEEEEeCC
Q 030172 53 SSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDRE 119 (182)
Q Consensus 53 ~~~~~~G~iv~g~----~~G~fV~l~~~~g~~~~~glv~~s-els~~~~~~~~~~~~~Gd~v~vkV~~id~~ 119 (182)
..++.+|++.+|. +.-.+|.|.+.+| .+|++--. .+-.++..+.++.+ +|..|+++|+.+|..
T Consensus 27 ~~~~~~g~VtkGiVy~kd~~fyV~L~dY~g---lEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 27 AMDLSPGSVHEGIVYFKDGIFKVRLLGYEG---HECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCCCSSCEEEEEEEEETTEEEEECTTTSS---CEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS
T ss_pred ccccCCCceEeeEEEEeCCEEEEEecCCCC---ceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE
Confidence 3578999999999 5556888865545 88887311 12233445555555 899999999999863
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=92.00 E-value=0.077 Score=44.42 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=32.3
Q ss_pred HHhhhcCCCCceeEeeEee----ecCCeeEEecCC---Chhhhchhhhh
Q 030172 138 TLEKVIPQDGSVISDSSSM----SSSNSNTIEPLP---GLGAIFEELLQ 179 (182)
Q Consensus 138 ~~~~~~~~~g~~v~G~V~~----v~~~G~fV~l~~---gv~gl~~~~~~ 179 (182)
....|....|++++|+|.+ +.+.++||++.. +++|++|.-.+
T Consensus 122 i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eq 170 (366)
T 1k0r_A 122 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ 170 (366)
T ss_dssp -----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGS
T ss_pred HHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHc
Confidence 3456654569999999999 999999999976 59999998765
No 83
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.11 Score=48.91 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=26.1
Q ss_pred CceeEeeEeeecCCeeEEecCC-Chhhhchhh
Q 030172 147 GSVISDSSSMSSSNSNTIEPLP-GLGAIFEEL 177 (182)
Q Consensus 147 g~~v~G~V~~v~~~G~fV~l~~-gv~gl~~~~ 177 (182)
|+.+.|+|+++.+||+||.|.+ |++||+|-.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis 918 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLD 918 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGG
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEec
Confidence 7788899999988999999877 888888754
No 84
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=90.58 E-value=0.12 Score=42.34 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=29.7
Q ss_pred hhcCCCCceeEeeEeeecCCeeEEecCCChhhhch
Q 030172 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFE 175 (182)
Q Consensus 141 ~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~ 175 (182)
+|.|..|++|.|+|+++.++|+||++....+|+++
T Consensus 90 rY~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~ 124 (308)
T 2nn6_H 90 RYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLL 124 (308)
T ss_dssp CCCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEE
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEECCCcCCcee
Confidence 36666799999999999999999999766777664
No 85
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=89.98 E-value=0.35 Score=34.29 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=24.5
Q ss_pred CCCeEEEEEEEEeCCCCEEEEEechh
Q 030172 22 TGSIISVKVIQANEEMKKLVFSEKDA 47 (182)
Q Consensus 22 vG~~v~~~v~~~d~~~~~i~lS~k~~ 47 (182)
+|++|.++|+.+|.+++++.+|.+..
T Consensus 54 vGd~V~vkV~~vd~~~~kI~LSlk~~ 79 (130)
T 2k4k_A 54 VGDEVQVKVLAVDEEKGKISLSIRAT 79 (130)
T ss_dssp TTCEEEEEEEEEETTTTEEEEESHHH
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 89999999999999899999999874
No 86
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=89.00 E-value=0.19 Score=45.93 Aligned_cols=31 Identities=10% Similarity=-0.087 Sum_probs=25.6
Q ss_pred ceeEeeEeeecCCeeEEecCC-Chhhhchhhh
Q 030172 148 SVISDSSSMSSSNSNTIEPLP-GLGAIFEELL 178 (182)
Q Consensus 148 ~~v~G~V~~v~~~G~fV~l~~-gv~gl~~~~~ 178 (182)
+.+.|+|+++.++|+||.|.+ |++||+|-..
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~ 702 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDN 702 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHH
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEecc
Confidence 688889999999999999877 8888887543
No 87
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=87.95 E-value=0.059 Score=43.23 Aligned_cols=42 Identities=17% Similarity=-0.027 Sum_probs=32.1
Q ss_pred CCCCCCCccHHH--hh-hh-cCCCeEEEEEEEEeCCCCEEEEEech
Q 030172 5 HSCKEPQKSIHE--IA-KG-LTGSIISVKVIQANEEMKKLVFSEKD 46 (182)
Q Consensus 5 ~~~p~~e~~~~~--~~-~~-~vG~~v~~~v~~~d~~~~~i~lS~k~ 46 (182)
.|++.++++... .. +. .+|+.+.++|+.+|+.++++.+|++.
T Consensus 39 GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 39 AFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp CBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred EEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 467777776432 11 11 38999999999999989999999985
No 88
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=86.17 E-value=4.6 Score=30.96 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=41.9
Q ss_pred hhcCCCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCcc------------ccccCCCEEEEEEE
Q 030172 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR------------DILNEGDEVRVKVI 114 (182)
Q Consensus 52 ~~~~~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~------------~~~~~Gd~v~vkV~ 114 (182)
....+..|+++.|+ +.|+.+-+.++ ..++|+...+...+.-++. +.-++|+.|+.||.
T Consensus 123 iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~-----Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~ 197 (214)
T 2rf4_A 123 YVWQPQVGDVLEGYIFIQSASHIGLLIHDA-----FNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVR 197 (214)
T ss_dssp EEECCCTTCEEEEEECCCCSSCEEEEETTT-----EEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEE
T ss_pred EEEecCCCCEEEEEEEEECCCcEEEEEeCC-----EEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEE
Confidence 34578999999999 54555433212 7789999888543321111 11236999999999
Q ss_pred EEeCCC
Q 030172 115 KIDREK 120 (182)
Q Consensus 115 ~id~~~ 120 (182)
+++...
T Consensus 198 ~~~~~~ 203 (214)
T 2rf4_A 198 NVHTTG 203 (214)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998643
No 89
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=78.22 E-value=5.6 Score=26.72 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=37.9
Q ss_pred CCCCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccc-----cC-ccccccCCCEEEEE
Q 030172 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----QD-IRDILNEGDEVRVK 112 (182)
Q Consensus 56 ~~~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~-----~~-~~~~~~~Gd~v~vk 112 (182)
...|+.+.|. +.++-|.+. +| -.+.|+.+.|.|.+- .. +.+.+++||.|.|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~--~g---~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRK--NG---ETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEET--TS---CEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEc--CC---CeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 4457766666 556777774 44 667799999999852 33 66779999999998
No 90
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=66.44 E-value=17 Score=23.14 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=24.0
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~ 115 (182)
-+.|+|++.+.......--+.++.||.|...+..
T Consensus 32 ~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 32 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred ccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 8999999999754111112347799999988754
No 91
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=59.47 E-value=11 Score=23.27 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=26.4
Q ss_pred CccccccCCCEEEEEEEEEeCCCCeEEEEEeecc
Q 030172 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (182)
Q Consensus 98 ~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~ 131 (182)
++.+.+.+||.+.++|++++ .+++.|.+....
T Consensus 9 k~GE~I~Igd~I~I~Vl~i~--g~~VrlGI~AP~ 40 (63)
T 2bti_A 9 RVGETLMIGDEVTVTVLGVK--GNQVRIGVNAPK 40 (63)
T ss_dssp ETTCEEEETTTEEEEEEEEE--TTEEEEEEEECT
T ss_pred cCCCeEEeCCCEEEEEEEEe--CCEEEEEEECCC
Confidence 34566889999999999997 788999987654
No 92
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=58.53 E-value=11 Score=23.81 Aligned_cols=31 Identities=13% Similarity=0.491 Sum_probs=26.0
Q ss_pred ccccccCCCEEEEEEEEEeCCCCeEEEEEeecc
Q 030172 99 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (182)
Q Consensus 99 ~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~ 131 (182)
+.+.+.+||.+.++|++++ .+++.|.+....
T Consensus 8 ~GEsI~IGd~I~ItVl~v~--g~~VrLGI~APk 38 (70)
T 2jpp_A 8 VGESINIGDDITITILGVS--GQQVRIGINAPK 38 (70)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEECCT
T ss_pred CCCeEEECCCEEEEEEEEe--CCEEEEEEECCC
Confidence 4566889999999999997 789999997654
No 93
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=56.24 E-value=7.9 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=32.1
Q ss_pred hhcCCCCceeEeeEeeecCCeeEEecCCChhhhchhh
Q 030172 141 KVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEEL 177 (182)
Q Consensus 141 ~~~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~ 177 (182)
+|.|..|+.|-|+|+++....+.|++..-..|+++.+
T Consensus 122 rYiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~ 158 (289)
T 2nn6_G 122 RYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYL 158 (289)
T ss_dssp SCCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESC
T ss_pred CCCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehh
Confidence 4667789999999999999999999988777887755
No 94
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=52.76 E-value=14 Score=23.50 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=26.5
Q ss_pred CccccccCCCEEEEEEEEEeCCCCeEEEEEeecc
Q 030172 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (182)
Q Consensus 98 ~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~ 131 (182)
++.+.+.+||.+++.|+++. .+++.|.+....
T Consensus 19 K~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk 50 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVK--GNQVRIGVNAPK 50 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEE--TTEEEEEEEEET
T ss_pred cCCCEEEeCCCEEEEEEEEe--CCEEEEEEECCC
Confidence 45677889999999999997 788999887643
No 95
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=50.93 E-value=24 Score=23.00 Aligned_cols=48 Identities=27% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCCEEEEE----eEeE-EEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEE
Q 030172 58 VEDIFVGR----DYGA-FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (182)
Q Consensus 58 ~G~iv~g~----~~G~-fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~ 114 (182)
.+....|+ +.|. |+.-. +| +-+.|+|++.+... .+.++.||.|...+.
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~d--dg--g~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETA--NH--DKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECS--SS--SCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCceeEEEEEEECCccEEecC--CC--CceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 45667777 3333 44433 32 27999999998764 245789999998763
No 96
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=50.80 E-value=8.8 Score=24.14 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=12.8
Q ss_pred ccCccccccCCCEEEE
Q 030172 96 IQDIRDILNEGDEVRV 111 (182)
Q Consensus 96 ~~~~~~~~~~Gd~v~v 111 (182)
...++++|++||.|+|
T Consensus 11 ~~~LrK~F~~GDHVkV 26 (69)
T 2do3_A 11 AQELRKYFKMGDHVKV 26 (69)
T ss_dssp CCCCCSSCCTTCEEEE
T ss_pred HHHceeeccCCCeEEE
Confidence 3456788999999986
No 97
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=48.87 E-value=62 Score=23.20 Aligned_cols=47 Identities=32% Similarity=0.427 Sum_probs=31.9
Q ss_pred CCEEEEE--------eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEE
Q 030172 59 EDIFVGR--------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (182)
Q Consensus 59 G~iv~g~--------~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~i 116 (182)
|....|+ -||. +.-. +| +-+.|+|++.+... ..+..||.|...+...
T Consensus 60 g~m~~GtVKwFn~~KGfGF-I~~d--dG--g~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 60 GPVYKGVCKCFCRSKGHGF-ITPA--DG--GPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp SCCEEEEEEEEETTTTEEE-EEES--SS--CSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred CCccceEEEEEeCCCCeEE-eccC--CC--CccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 4556676 4554 4443 22 27899999998633 2588999999888653
No 98
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=48.14 E-value=17 Score=23.36 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=35.1
Q ss_pred CCEEEEEeEe-EEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEE
Q 030172 59 EDIFVGRDYG-AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (182)
Q Consensus 59 G~iv~g~~~G-~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS 126 (182)
|.++++...| .+|.+. +| ..-++|++---.. .. -.+.+||.|.+.+-..|..+++|...
T Consensus 18 G~Vik~l~n~~f~V~l~--nG---~~~~c~i~GK~Rk--~~--I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 18 GRVVEPLPNAMFRIELE--NG---HKVLAHISGKMRQ--HY--IRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp EEEEEEETTTEEEEEET--TS---CEEEEEECHHHHH--TT--CCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEeC--CC---CEEEEEeCcceec--CC--ccCCCCCEEEEEECccCCCcEEEEEE
Confidence 5555555223 456664 55 6777777631111 01 12679999999887777666666543
No 99
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=47.47 E-value=24 Score=27.75 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=46.4
Q ss_pred cCCCEEEEEEEE----EeCCCCeEEEEEee------c-cCCchhHHHhhhcCCCCceeEeeEeeecC--CeeEEecCCCh
Q 030172 104 NEGDEVRVKVIK----IDREKSRITLSIKQ------L-EEDPLLETLEKVIPQDGSVISDSSSMSSS--NSNTIEPLPGL 170 (182)
Q Consensus 104 ~~Gd~v~vkV~~----id~~~~ki~lS~k~------~-~~~p~~~~~~~~~~~~g~~v~G~V~~v~~--~G~fV~l~~gv 170 (182)
+.|+.|.+.|.. ++. +.+.+.+=. . .+.......+.|.+ |+.+...|..+.+ .|--|-|.---
T Consensus 6 r~GeIVtG~V~r~~~~v~~--~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~--GDrIkayV~~V~~~~~gpqIiLSRt~ 81 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANAR--GLVVVRIGTETKASEGVIPAAEQVPGESYEH--GNRLRCYVVGVTRGAREPLITLSRTH 81 (251)
T ss_dssp CTTCEEEEEEECCHHHHHT--TCEEEEECSSSSCEEEEECGGGSCTTCCCCT--TCEEEEEEEEEECCSSSCEEEEESSC
T ss_pred cCCCEEEEEEEEccccccC--CeEEEEeCCCCcceEEEEcHHHcCCCccCCC--CCEEEEEEEEEEcCCCCCEEEEEecc
Confidence 479999999998 663 345554421 1 11111111245666 9999999999987 36666666667
Q ss_pred hhhchhhhhc
Q 030172 171 GAIFEELLQE 180 (182)
Q Consensus 171 ~gl~~~~~~~ 180 (182)
-.|+.+|+..
T Consensus 82 p~lvk~Lfe~ 91 (251)
T 2asb_A 82 PNLVRKLFSL 91 (251)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777653
No 100
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=46.65 E-value=50 Score=20.45 Aligned_cols=31 Identities=29% Similarity=0.251 Sum_probs=23.2
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~i 116 (182)
-+.|+|++.+..... ..++.||.|...+..-
T Consensus 24 ~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 24 TDVFVHYTAINAKGF----RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp CCEEEEGGGBCSSSC----SSCCTTCEEEEEEECC
T ss_pred CcEEEEhhhccccCC----CCCCCCCEEEEEEEEC
Confidence 789999999875422 3467899999887443
No 101
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=45.73 E-value=48 Score=20.02 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=23.5
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~i 116 (182)
-+.|+|++.+..... ..++.||.|...+..-
T Consensus 24 ~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 24 SDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEGGGBCSSSC----CCCCTTCEEEEEEEEE
T ss_pred ccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 799999999875422 3467899999887543
No 102
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=41.82 E-value=33 Score=22.71 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=22.8
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~ 114 (182)
-+.|+|++.+... .+.++.||.|...+.
T Consensus 40 ~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 40 KEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred ceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 7899999999764 245789999998883
No 103
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=41.62 E-value=70 Score=20.71 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=33.1
Q ss_pred CCCCEEEEE----eEeE-EEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEE
Q 030172 57 NVEDIFVGR----DYGA-FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (182)
Q Consensus 57 ~~G~iv~g~----~~G~-fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~i 116 (182)
.......|+ +.|. |+.-. +| +-+.|+|++.+... ...++.||.|...+..-
T Consensus 14 s~~~~~~G~Vkwf~KGfGFI~~d--dg--g~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 14 SAALRETGVIEKLLTSYGFIQCS--ER--QARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp SCCCEEEEEEEEECSSEEEEEET--TT--TEEEEEETTTCSSC-----TTTCCTTCCEEEEEEEC
T ss_pred CcccccceEEEEEeCCeeEEecC--CC--CccEEEEhHHhhCc-----cCCCCCCCEEEEEEEEC
Confidence 334556666 3333 44443 32 28999999998754 24578999999988543
No 104
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=41.13 E-value=52 Score=20.23 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=23.6
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~i 116 (182)
-+.|+|++.+.... .+.++.||.|...+..-
T Consensus 29 ~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 29 KDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 59 (71)
T ss_dssp CCEEEEGGGBCCSS----CCCCCTTCEEEEEEEEE
T ss_pred ccEEEEhHHccccc----CcCCCCCCEEEEEEEEC
Confidence 68999999987542 23477999999888543
No 105
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=40.16 E-value=66 Score=20.04 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=26.8
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEee
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~ 129 (182)
-. |+|++.+.... .++.||.|...+.. ++ ++.-...++.
T Consensus 26 ~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g~-kG~~A~~V~~ 64 (74)
T 2k5n_A 26 NR-YFHVIKVANPD------LIKKDAAVTFEPTT-NN-KGLSAYAVKV 64 (74)
T ss_dssp EE-EEEGGGBSSGG------GCCTTCEEEEEEEE-CS-SSEEEEEEEE
T ss_pred ce-EEEHhHcccCC------CCCCCCEEEEEEEe-CC-CCceeEEEEe
Confidence 55 99999987542 57899999998853 32 5544444443
No 106
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=37.63 E-value=16 Score=24.44 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=26.1
Q ss_pred CccccccCCCEEEEEEEEEeCCCCeEEEEEeecc
Q 030172 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (182)
Q Consensus 98 ~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~ 131 (182)
.+.+.+.+||.|.+.|++++ .+++.|.+....
T Consensus 28 K~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk 59 (95)
T 1t3o_A 28 KINEAIQIGADIEVKVIAVE--GDQVKLGIDAPK 59 (95)
T ss_dssp TTCCCEEETTTEEECCCEEC--SSCEEEEEEESS
T ss_pred cCCCeEEECCCEEEEEEEEe--CCEEEEEEECCC
Confidence 45667889999999999996 688888887643
No 107
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=37.43 E-value=60 Score=22.70 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCCEEEEE-----eEeEEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEE
Q 030172 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113 (182)
Q Consensus 58 ~G~iv~g~-----~~G~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV 113 (182)
.|..+.|+ +.+++|.+. +. .+-+--+|++++....-......|.+||.|+|--
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~--n~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFE--NN-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEET--TC-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEc--cc-cCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 37777777 556888874 21 1124566777765433333345689999999743
No 108
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=33.05 E-value=83 Score=19.05 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=23.5
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~i 116 (182)
-+.|+|++.+...-. ..++.||.|...+..-
T Consensus 25 ~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 25 EDLFAHFSAINMEGF----KTLKEGQRVSFDVTTG 55 (67)
T ss_dssp CCEEEEGGGBCGGGG----SSCCTTCEEEEEEEEE
T ss_pred ccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 789999999874322 3477999999988543
No 109
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=30.39 E-value=34 Score=22.23 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=16.4
Q ss_pred cccccCCCEEEEEEEEEeC
Q 030172 100 RDILNEGDEVRVKVIKIDR 118 (182)
Q Consensus 100 ~~~~~~Gd~v~vkV~~id~ 118 (182)
+..|++||.|.++++-.|.
T Consensus 10 r~iYrPGetV~~~~~~~~~ 28 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMDE 28 (102)
T ss_dssp CSEECTTCEEEEEEEEECG
T ss_pred CcccCCCCEEEEEEEEECC
Confidence 4569999999999998875
No 110
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=28.98 E-value=59 Score=22.00 Aligned_cols=34 Identities=12% Similarity=-0.108 Sum_probs=24.1
Q ss_pred CCCCCCCCCccHHHhhhhcCCCeEEEE--EEEEeCCCCEEEEE
Q 030172 3 PSHSCKEPQKSIHEIAKGLTGSIISVK--VIQANEEMKKLVFS 43 (182)
Q Consensus 3 p~~~~p~~e~~~~~~~~~~vG~~v~~~--v~~~d~~~~~i~lS 43 (182)
||++|..+++... -.|+++.|- |.+|+ .+.+.+.
T Consensus 6 ps~L~~Ls~lp~~-----~~G~KVRFLGCV~sY~--tg~L~Le 41 (105)
T 3kf6_B 6 SAKLIFINQINDC-----KDGQKLRFLGCVQSYK--NGILRLI 41 (105)
T ss_dssp CCEECCGGGGGGS-----CTTCEEEEEEEEEEEE--TTEEEEE
T ss_pred cceEeehhhccCC-----CCCCEEEEEEEeeeec--cEEEEEc
Confidence 5665555554433 479999985 99999 7888875
No 111
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=28.92 E-value=75 Score=19.14 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=22.0
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~ 114 (182)
-+.|+|++.+...-. ..++.||.|...+.
T Consensus 23 ~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~ 51 (66)
T 1g6p_A 23 GDVFVHWSAIEMEGF----KTLKEGQVVEFEIQ 51 (66)
T ss_dssp CBCBBCSSSSCCSSC----CCCCSSSEEEEEEE
T ss_pred ceEEEEhHHccccCC----CCCCCCCEEEEEEE
Confidence 789999999875422 34779999998874
No 112
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.08 E-value=1.7e+02 Score=20.57 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=28.4
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEe
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k 128 (182)
-+.|+|++.|....+ ..+..||.|...+..-+ ++.-...+.
T Consensus 40 ~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~g~--kG~~A~~V~ 80 (148)
T 3ts2_A 40 VDVFVHQSKLHMEGF----RSLKEGEAVEFTFKKSA--KGLESIRVT 80 (148)
T ss_dssp EEEEEEGGGBCSSSS----CCCCTTCEEEEEEEEET--TEEEEEEEE
T ss_pred ccEEEEhHHhcccCC----ccCCCCCEEEEEEEEcc--ccchhhccc
Confidence 799999999875432 34678999999886543 454444444
No 113
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.14 E-value=82 Score=21.03 Aligned_cols=32 Identities=3% Similarity=0.082 Sum_probs=22.8
Q ss_pred EeCCCCEEEEEechhHHhhhhcCCCCCCEEEEE
Q 030172 33 ANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR 65 (182)
Q Consensus 33 ~d~~~~~i~lS~k~~~~~~~~~~~~~G~iv~g~ 65 (182)
.|.. |.+.++.-....+.+.+.+++|++|.=.
T Consensus 47 ~De~-G~I~at~~~~~~~~f~~~l~eG~vy~Is 78 (114)
T 1ynx_A 47 LDTS-GEIRATAFNDFATKFNEILQEGKVYYVS 78 (114)
T ss_dssp EETT-EEEEEEECHHHHHHHHHHSCSSSEEEEE
T ss_pred ECCC-CeEEEEECHHHHHHHHhhcccCcEEEEC
Confidence 4543 4777776666666777889999998755
No 114
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.29 E-value=46 Score=25.20 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=24.0
Q ss_pred cCCCCceeEeeEeeecCCeeEEecCCChhhhchhh
Q 030172 143 IPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEEL 177 (182)
Q Consensus 143 ~~~~g~~v~G~V~~v~~~G~fV~l~~gv~gl~~~~ 177 (182)
.|..|++..|+|+.+.+.|+.+-+.+=.+.++|+-
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~ 160 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKN 160 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETTTEEEEECST
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHH
Confidence 34569999999999999666554334444566553
No 115
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.86 E-value=1.6e+02 Score=19.03 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~i 116 (182)
-+.|||+|.|...-+ +.+..||.|...+..-
T Consensus 39 ~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 39 VDVFVHQSKLYMEGF----RSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEGGGBCCSSS----CCCCTTCEEEEEEEEE
T ss_pred ccEEEEeehhcccCC----CccCCCCEEEEEEEEC
Confidence 789999999865432 3467899999988654
No 116
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=26.91 E-value=20 Score=22.19 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=22.3
Q ss_pred EEEEEEccCcCCccccCccccccCCCEEEEEEEE
Q 030172 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIK 115 (182)
Q Consensus 82 ~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~ 115 (182)
-+.|+|++.+..... +.+..||.|...+..
T Consensus 28 ~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 28 KDVFVHKSAVDAAGL----HSLEEGQDVIFDLEE 57 (70)
Confidence 789999999875422 346789999987743
No 117
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.13 E-value=2.3e+02 Score=20.13 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=35.1
Q ss_pred EEEEEecCCCceeEEEEEEccCcCCccccCccccccCCCEEEEEEEEEeCCCCeEEEEEee
Q 030172 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (182)
Q Consensus 69 ~fV~l~~~~g~~~~~glv~~sels~~~~~~~~~~~~~Gd~v~vkV~~id~~~~ki~lS~k~ 129 (182)
+-|.+. +| ..-++|++---.. .-.+..||.|.|-....|..+++|..-.+.
T Consensus 46 f~V~l~--nG---~~~La~I~GKmRk-----~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 46 LEAMCF--DG---VKRLCHIRGKLRK-----KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp EEEEET--TT---EEEEEECCSGGGG-----SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred EEEEeC--CC---CEEEEEeccccee-----eEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 345553 67 8999998752211 223789999999887777777877776654
No 118
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=20.67 E-value=2.2e+02 Score=19.67 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=33.1
Q ss_pred cccCCCEEEEEEEEEeCCCCeEEEEEeeccCCchhHHHhhhcCCCCceeEeeEeeec-----CCeeEEecCCChhhhc
Q 030172 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSS-----SNSNTIEPLPGLGAIF 174 (182)
Q Consensus 102 ~~~~Gd~v~vkV~~id~~~~ki~lS~k~~~~~p~~~~~~~~~~~~g~~v~G~V~~v~-----~~G~fV~l~~gv~gl~ 174 (182)
+-.+||.|.|.|.+..|. . +.+. |+++.+.|.+.. +.|.++.++++---|+
T Consensus 32 ~a~iGD~IvvsVK~~~p~-~-------------------~vkk--g~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vli 87 (122)
T 3r8s_K 32 YAGVGDIIKITIKEAIPR-G-------------------KVKK--GDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLL 87 (122)
T ss_dssp CBCTTCEEEEEEEEECTT-S-------------------SSCT--TCEEEEEEEECSSCEECTTSCEEEESSCEEEEE
T ss_pred cccCCCEEEEEEEEcCCC-C-------------------cccc--CCEEEEEEEEeCCcCCCCCCcEEEcCCceEEEE
Confidence 457899999998776552 1 2223 777777777653 3577777766544444
No 119
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=20.59 E-value=32 Score=24.01 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCCCC-CCCCCccHHHhhhhcCCCeEEEEEEEEeCCCCEEEEEech
Q 030172 1 MSPSHS-CKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKD 46 (182)
Q Consensus 1 ~~p~~~-~p~~e~~~~~~~~~~vG~~v~~~v~~~d~~~~~i~lS~k~ 46 (182)
++|+-| .-+|+.+.++..+ + ++-+.|++||+....+.+..-.
T Consensus 6 l~P~~Ls~~FP~aS~s~p~k--V--R~L~QVisYd~~sa~L~l~~~p 48 (123)
T 3kf8_B 6 LIPSNIPQEFPEASISNPER--L--RILAQVKDFIPHESTIVIDKVP 48 (123)
T ss_dssp SCGGGHHHHCTTCBTTBCEE--E--EEEEEEEEEEGGGTEEEEECCG
T ss_pred EChHHhhhhCccccccCCce--E--EEEEEEEEEcCCCcEEEEEecC
Confidence 356665 5677777775321 2 6778899999999998886553
Done!