Query 030174
Match_columns 182
No_of_seqs 146 out of 923
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00156 60S ribosomal protein 100.0 5.9E-72 1.3E-76 454.7 15.8 170 6-175 3-172 (172)
2 PRK04219 rpl5p 50S ribosomal p 100.0 7.1E-69 1.5E-73 439.3 15.5 170 5-174 6-176 (177)
3 COG0094 RplE Ribosomal protein 100.0 1.4E-62 3.1E-67 400.2 11.3 153 3-155 18-180 (180)
4 KOG0397 60S ribosomal protein 100.0 6.9E-56 1.5E-60 351.2 10.0 175 3-177 2-176 (176)
5 PRK00010 rplE 50S ribosomal pr 100.0 1.4E-53 3.1E-58 349.9 12.0 136 4-139 19-164 (179)
6 CHL00078 rpl5 ribosomal protei 100.0 3.3E-53 7.2E-58 348.3 11.8 136 4-139 20-165 (181)
7 KOG0398 Mitochondrial/chloropl 100.0 1.4E-41 3E-46 286.6 9.4 141 4-144 111-265 (278)
8 PF00673 Ribosomal_L5_C: ribos 100.0 1.5E-29 3.3E-34 188.7 6.4 74 66-139 1-81 (95)
9 PF00281 Ribosomal_L5: Ribosom 99.8 2.9E-21 6.3E-26 131.6 5.3 54 9-62 1-56 (56)
10 COG1504 Uncharacterized conser 67.1 5.8 0.00013 31.0 2.8 48 128-178 22-71 (121)
11 TIGR02889 spore_YpeB germinati 38.5 60 0.0013 30.5 5.0 106 55-171 247-388 (435)
12 PF08261 Carcinustatin: Carcin 37.4 11 0.00024 16.3 -0.0 7 102-108 2-8 (8)
13 PF01807 zf-CHC2: CHC2 zinc fi 33.6 25 0.00054 25.8 1.4 23 154-176 74-96 (97)
14 cd01803 Ubiquitin Ubiquitin. U 25.8 1.9E+02 0.004 19.1 4.6 45 31-75 22-75 (76)
15 PF09456 RcsC: RcsC Alpha-Beta 23.2 67 0.0014 24.0 2.1 24 69-92 2-25 (92)
16 PF11672 DUF3268: Protein of u 21.8 46 0.00099 25.3 1.0 22 153-174 76-97 (102)
17 PF05953 Allatostatin: Allatos 20.8 36 0.00077 16.1 0.1 7 102-108 4-10 (11)
18 PF02761 Cbl_N2: CBL proto-onc 20.1 61 0.0013 24.0 1.3 19 154-172 2-20 (85)
No 1
>PTZ00156 60S ribosomal protein L11; Provisional
Probab=100.00 E-value=5.9e-72 Score=454.70 Aligned_cols=170 Identities=79% Similarity=1.270 Sum_probs=167.2
Q ss_pred CCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHHh
Q 030174 6 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESG 85 (182)
Q Consensus 6 ~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~kl 85 (182)
-.+|+|++|+|+|||||+|+|++++.|+.|..+|++||||+|++|+||+||++||||+|+||||+|||||++||+||+||
T Consensus 3 ~~~n~m~~PkI~KIvvN~gvGe~~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkG~pIG~kVTLRg~~m~eFLdrl 82 (172)
T PTZ00156 3 KKENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRNEKIACHVTVRGDKAEEILERG 82 (172)
T ss_pred ccCCCccCceeEEEEEEcCcCchHHHHHHHHHHHHHHcCCceEEEEhhcccccccccCCCEEEEEEEEchHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHHHh
Q 030174 86 LKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWF 165 (182)
Q Consensus 86 irirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~~~ 165 (182)
+++|||+|+.++||++|||+|||+||++||++|||..+++||||+|++++||||+++|++++++||.+|||++|||++||
T Consensus 83 irirDf~l~~~sFD~~GN~sfGI~e~i~fei~yD~~~~i~GmdI~ivl~rpG~rv~~R~~~~~~i~~~hrv~~eea~~~~ 162 (172)
T PTZ00156 83 LKVKEFELKKRNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLGRPGFRVARRKRKQSKVGKSHRVTKEEAMKWF 162 (172)
T ss_pred HhhhcccccCcccCCCcccccCCchheeeceecCcccCcccCceEEEEeCCcceeeecccccccCCCCceeCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccEEEec
Q 030174 166 QVKYEGVILN 175 (182)
Q Consensus 166 ~~~~~~~~~~ 175 (182)
+++|||+|++
T Consensus 163 ~~~~~v~v~~ 172 (172)
T PTZ00156 163 KTTFDGIILN 172 (172)
T ss_pred HhhcCEEEcC
Confidence 9999999975
No 2
>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed
Probab=100.00 E-value=7.1e-69 Score=439.31 Aligned_cols=170 Identities=48% Similarity=0.845 Sum_probs=166.9
Q ss_pred CCCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHH
Q 030174 5 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES 84 (182)
Q Consensus 5 ~~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~k 84 (182)
...+|+|++|+|+|||||+|+|++++.|..|..+|++||||+|++|+||++|++||||+|+||||+|||||++||+||++
T Consensus 6 ~~~~N~m~iPkI~KIvin~gvgea~~~L~~a~~~L~~ITGQkP~~tkAKksIa~FkiRkG~pIG~kVTLRg~~m~~FL~r 85 (177)
T PRK04219 6 DWEMNPMRKPRIEKVVVNIGVGESGERLTKAEKLLEELTGQKPVRTRAKKTIPDFGIRKGEPIGVKVTLRGEKAEEFLKT 85 (177)
T ss_pred cccCCCccCceeeEEEEEcCcHHHHHHHHHHHHHHHHHhCCCceeeeccccccccCccCCCEEEEEEEEccHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHH
Q 030174 85 GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMK 163 (182)
Q Consensus 85 lirirdf~l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~ 163 (182)
|+.+.||.|+.++||++|||+|||+||++| |++|||..+++||||+|||++||||+++|++++++||++|||++|||++
T Consensus 86 li~ivd~~l~~~sfD~~GN~sfGI~e~~~fpei~yd~~~~i~GmdI~ivt~rpg~rv~~r~~~~~~i~~~~~~~~~e~~~ 165 (177)
T PRK04219 86 ALEAVGNRLKASSFDETGNVSFGIEEHIDFPGVKYDPEIGIFGMDVCVTLERPGYRVARRRRKRRKIPSRHRVTKEEAIE 165 (177)
T ss_pred HHHhhcCCCCCcccCCCceEeeCchhhhccCccccCcccccccccEEEEEcCCccchhhhhhccccCCCCceeCHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccEEEe
Q 030174 164 WFQVKYEGVIL 174 (182)
Q Consensus 164 ~~~~~~~~~~~ 174 (182)
||+++|||+|+
T Consensus 166 ~~~~~~~~~~~ 176 (177)
T PRK04219 166 FLEENFGVEVV 176 (177)
T ss_pred HHHHhcCeEEe
Confidence 99999999996
No 3
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-62 Score=400.17 Aligned_cols=153 Identities=37% Similarity=0.622 Sum_probs=145.3
Q ss_pred CCCCCCCCCCceeeeEEEEEccCCch---hHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHH
Q 030174 3 SDKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAM 79 (182)
Q Consensus 3 ~~~~y~n~m~iP~i~KIvln~gvg~a---~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my 79 (182)
.+.+|+|||++|+|+||||||||||| ++.|+.|..+|++||||+|++|+||+||++||||+|+||||||||||++||
T Consensus 18 ~~~~y~n~M~~P~i~KVvvNmGvGEa~~d~~~l~~A~~~L~~ItGQKPv~tkAkksia~FkiR~g~pIG~KVTLRg~rm~ 97 (180)
T COG0094 18 KKFGYSNPMQVPRIEKVVVNMGVGEAAADGKRLEKAAKDLELITGQKPVITKAKKSIAGFKIREGMPIGVKVTLRGERMY 97 (180)
T ss_pred HhhccCCccccceeEEEEEEccchhhhhchHHHHHHHHHHHHHhCCCceeeehhcccccccccCCCeeeEEEEEchHHHH
Confidence 46899999999999999999999999 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeeeeccccCCCCC
Q 030174 80 QLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGI 152 (182)
Q Consensus 80 ~FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~ 152 (182)
+||++|+ |+|||+ |+.+|||+.|||+|||+||++| |++|||.++++||||+|+|+|+|+..+|+.-+...+|.
T Consensus 98 eFL~rl~~i~lPrvrdfrGls~~sFDg~GN~sfGI~E~i~FPei~yD~~~~i~GMdi~ivtta~~d~e~R~ll~~~~~Pf 177 (180)
T COG0094 98 EFLDRLLNIALPRVRDFRGLSPKSFDGRGNYSFGIKEQIIFPEIDYDPIIGIRGMDITIVTTAKGDVEARALLSAFGIPF 177 (180)
T ss_pred HHHHHHHHhhccccccccCCCccccCCCCceEecchheeecCccccCccCCccCceEEEEecCCChHHHHHHHHhcCCCC
Confidence 9999999 889999 9999999999999999999999 99999999999999999999999444444449999999
Q ss_pred Ccc
Q 030174 153 QHR 155 (182)
Q Consensus 153 ~hr 155 (182)
+|+
T Consensus 178 ~~~ 180 (180)
T COG0094 178 RKR 180 (180)
T ss_pred CCC
Confidence 986
No 4
>KOG0397 consensus 60S ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-56 Score=351.16 Aligned_cols=175 Identities=83% Similarity=1.270 Sum_probs=171.5
Q ss_pred CCCCCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHH
Q 030174 3 SDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLL 82 (182)
Q Consensus 3 ~~~~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL 82 (182)
.+..-.|||+..+|.|+|||+|++|++++|..|.++||++|||+|++++|+.+|.+|+||.++.|+|+||+||.++++.|
T Consensus 2 ~~~~~~npMrel~i~KL~lnIcvgESGdrLtRAaKvLEQLtGQ~pvfskaryTvR~fGirRNEKIAvh~tVrG~KAeeiL 81 (176)
T KOG0397|consen 2 MEKKAQNPMRELKIQKLVLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHVTVRGPKAEEIL 81 (176)
T ss_pred ccccccCchHhhhhheeeEEEeecccchHHHHHHHHHHHhcCCCccchhhhhhHHhhccccCceEEEEEEeeCccHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHH
Q 030174 83 ESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAM 162 (182)
Q Consensus 83 ~klirirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~ 162 (182)
++.+++++|+|..++|+.+|||.|||.||++++|.|||.++|||||+.+|+.+||+|+++|+|+++++|.+||+++||||
T Consensus 82 e~gLkVkeYeL~~~nFS~tgnFGFGiqEHIDLGikYDPsiGIyGmDFyVvl~RpG~rv~~rkr~~g~vG~~hr~~ked~~ 161 (176)
T KOG0397|consen 82 ERGLKVKEYELRKRNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVLGRPGYRVARRKRCKGRVGNKHRVTKEDAM 161 (176)
T ss_pred HhccchhhhhhhhhcccccCCcccchhhheeccceeCCCcceeeeeEEEEecCCcchhhhhccCcCccCccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccEEEecCc
Q 030174 163 KWFQVKYEGVILNKS 177 (182)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (182)
.|||++|++.|+|.|
T Consensus 162 kwFq~kydgvil~~k 176 (176)
T KOG0397|consen 162 KWFQQKYDGVILPKK 176 (176)
T ss_pred HHHHHhCceeecCCC
Confidence 999999999999875
No 5
>PRK00010 rplE 50S ribosomal protein L5; Validated
Probab=100.00 E-value=1.4e-53 Score=349.93 Aligned_cols=136 Identities=32% Similarity=0.559 Sum_probs=130.8
Q ss_pred CCCCCCCCCceeeeEEEEEccCCchhH---HHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a~~---~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
..+|+|+|++|+|+|||||+|+|++.+ .|..|..+|++||||+|++|+||++|++||||+|+|+||||||||++||+
T Consensus 19 ~~~y~n~m~iPki~KIvin~gvg~~~~~~~~l~~a~~~L~~ITGQkP~~t~aKksi~~fkiRkg~piG~kVTLRg~~my~ 98 (179)
T PRK00010 19 EFGYKNVMQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLITGQKPVVTKAKKSIAGFKLREGMPIGCKVTLRGERMYE 98 (179)
T ss_pred HhCCCCcccCCceeEEEEEccCcchhhchHHHHHHHHHHHHHhCCceEEEeccccccccCCCCCCEEEEEEEECcHHHHH
Confidence 468999999999999999999999853 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccce
Q 030174 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYR 139 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r 139 (182)
||+||+ |+|||+ ++.++||++|||+|||+||++| |++||++++++||||||||+|+++.
T Consensus 99 FL~kli~~vlPrirdf~Gi~~~sfD~~Gn~sfGi~e~~~FPei~yd~~~~i~G~~Itivtta~t~~ 164 (179)
T PRK00010 99 FLDRLINIALPRVRDFRGLSPKSFDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTAKTDE 164 (179)
T ss_pred HHHHHHHHhcccccccccccccccCCCceEEECcchhhcCCCcccCccCCcCCceEEEEeccCCHH
Confidence 999999 799999 9999999999999999999999 9999999999999999999988643
No 6
>CHL00078 rpl5 ribosomal protein L5
Probab=100.00 E-value=3.3e-53 Score=348.33 Aligned_cols=136 Identities=27% Similarity=0.504 Sum_probs=130.4
Q ss_pred CCCCCCCCCceeeeEEEEEccCCchh---HHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a~---~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
..+|+|+|++|+|+|||||+|+|++. +.|+.|..+|++||||+|++|+||+||++||||+|+|+||||||||++||+
T Consensus 20 ~~~~~n~m~iP~i~KIvin~gvg~~~~~~k~l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkg~piG~kVTLRg~~my~ 99 (181)
T CHL00078 20 KFLYKNIHQVPKLKKIVINRGLGEASQNSKILESSIKELTIITGQKPIITRAKKAIAGFKIREKMPVGVSVTLRGDKMYA 99 (181)
T ss_pred HhCCCCcccCCceeEEEEecCchhhhhchHHHHHHHHHHHHHhCCceEEEeecccchhcCccCCCEEEEEEEECcHhHHH
Confidence 46899999999999999999999975 469999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccce
Q 030174 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYR 139 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r 139 (182)
||+||+ |+|||+ ++.++||++|||+|||+||++| |++||++.+++||||||||+|+++.
T Consensus 100 FL~kli~~vlPrirdf~Gi~~~sfd~~Gn~sfGi~e~~~FPEi~~d~~~~i~G~~Itivtta~t~~ 165 (181)
T CHL00078 100 FLDRLINLALPRIRDFQGLSPKSFDGHGNYNLGLKEQLMFPEIDYDKIDQIRGMDISIVTTAKTDQ 165 (181)
T ss_pred HHHHHHHHhcccccccccccccccCCCceEEECcchhccCCCcccCccCCcCCCeEEEEEeeCCHH
Confidence 999999 899999 9999999999999999999999 9999999999999999999988643
No 7
>KOG0398 consensus Mitochondrial/chloroplast ribosomal protein L5/L7 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-41 Score=286.65 Aligned_cols=141 Identities=25% Similarity=0.408 Sum_probs=132.3
Q ss_pred CCCCCCCCCceeeeEEEEEccCCchh---HHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a~---~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
+..|-|++++|+|+||||||+++||. ..|+.|.+++++||||+|..++||+.|++||||+|+|+|+||||||+.||.
T Consensus 111 ~~~~vn~~nvP~v~kVVvnc~~~eA~~n~~~l~~am~~~~~ITG~kP~~~~ar~dV~twKlR~g~p~G~kVtL~G~~My~ 190 (278)
T KOG0398|consen 111 EFKYVNIHNVPKVQKVVVNCGIGEAAQNDKGLEAAMKDIALITGQKPIKTRARADVATWKLREGQPLGIKVTLRGDVMYS 190 (278)
T ss_pred cccccChhhCCceeeeeeecccHHhhhhHHHHHHHHHHHHHHhCCCcceeeecccCCceeeccCCcceeEEEEechHHHH
Confidence 56788999999999999999999984 379999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEeccc--ccccc-ccc--ccCCCCccccEEEEEeecccceeeeec
Q 030174 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQ--EHIDL-GIK--YDPSTGIYGMDFFVVLERPGYRVGRRR 144 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~--e~~~F-Ei~--yD~~~~i~GmdItivt~~~g~r~a~r~ 144 (182)
||++|+ |+|||+ ++.+|+|++||||||++ ++-.| ||+ ||.++..+||||+|.|+++.++.||.=
T Consensus 191 FLs~L~elvLPr~rdfkGvSp~Sgd~~GniSfGl~aEd~~~FPeI~An~d~~pkt~Gm~vnI~T~ak~d~~ar~l 265 (278)
T KOG0398|consen 191 FLSRLIELVLPRTRDFKGVSPSSGDGNGNISFGLKAEDQGVFPEIRANFDAVPKTRGMDVNISTTAKSDQEARKL 265 (278)
T ss_pred HHHHHHHHhccccccccCcCCCCcCCCCCEEeccchhhcccCchhhhhhhccccccceeEeecccccchHHHHHH
Confidence 999999 999999 99999999999999999 34457 886 999999999999999999999988753
No 8
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=99.96 E-value=1.5e-29 Score=188.66 Aligned_cols=74 Identities=39% Similarity=0.776 Sum_probs=70.7
Q ss_pred eEEEEEEEcCchHHHHHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccc
Q 030174 66 KIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 138 (182)
Q Consensus 66 piG~kVTLRG~~my~FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~ 138 (182)
||||||||||++||+||+||+ |+|||+ ++.++||.+|||+|||+|+++| |++||++++++||||+|+|+++..
T Consensus 1 PiG~kvTLRg~~m~~FL~kli~~vlPrik~f~g~~~~~fd~~Gn~sfGi~e~~~Fpei~yd~~~~i~G~~i~i~t~ak~~ 80 (95)
T PF00673_consen 1 PIGCKVTLRGKKMYEFLDKLITIVLPRIKDFKGLKASSFDNSGNFSFGIKEHILFPEIEYDPFPGIFGMDITIVTTAKTP 80 (95)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHTTTTTSSSTSSBSSTTBSSSSEEEEEESSSSSSSSSSSTSSSSSSCEEEEEEESCSSH
T ss_pred CeEEEEEEccHHHHHHHHHHHHHhhhhcccccccCccccCCCceEEEEeeeeeecCCccccCCCCccceEEEEEEecCCc
Confidence 899999999999999999999 899999 9999999999999999999999 999999999999999999877755
Q ss_pred e
Q 030174 139 R 139 (182)
Q Consensus 139 r 139 (182)
.
T Consensus 81 ~ 81 (95)
T PF00673_consen 81 K 81 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 4A1A_D 4A1C_D 4A17_D 4A1E_D 3BBO_H 3O5H_K 1S1I_J 3O58_K 3IZS_E ....
Probab=99.84 E-value=2.9e-21 Score=131.65 Aligned_cols=54 Identities=50% Similarity=0.795 Sum_probs=49.8
Q ss_pred CCCCceeeeEEEEEccCCchhH--HHHHHHHHHHHhhCCCceeeeeeccccCceee
Q 030174 9 NPMREIKVQKLVLNISVGESGD--RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIR 62 (182)
Q Consensus 9 n~m~iP~i~KIvln~gvg~a~~--~L~~a~~~L~~ITGQkp~~tkAKksia~FkiR 62 (182)
|+|++|+|+|||||+|+|++.+ .|+.|..+|+.||||+|++|+||++|++||||
T Consensus 1 N~m~vPki~KIvin~gvg~~~~~k~l~~a~~~L~~ItGQkp~~t~aKksia~FkiR 56 (56)
T PF00281_consen 1 NVMQVPKIEKIVINIGVGEAGDDKVLEKAKKELEQITGQKPVITKAKKSIANFKIR 56 (56)
T ss_dssp STTTSSEEEEEEEEEESSTTSSTHHHHHHHHHHHHHHSS--EEEEESSSBSSSTBS
T ss_pred CCccccEEEEEEEECCCCccccchHHHHHHHHHHHHhCCceeEEEeeccccccccC
Confidence 8999999999999999999865 49999999999999999999999999999998
No 10
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=67.06 E-value=5.8 Score=31.03 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=34.6
Q ss_pred EEEEEeecccceeeeec--cccCCCCCCcccChHHHHHHhHhhccEEEecCcc
Q 030174 128 DFFVVLERPGYRVGRRR--RCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 178 (182)
Q Consensus 128 dItivt~~~g~r~a~r~--~~~~~i~~~hr~~~~ea~~~~~~~~~~~~~~~~~ 178 (182)
||.|.++. ++.+|. .-+++-|-+|+++.||+.+.|.+.+++.|+-.-|
T Consensus 22 DIvi~~dG---~v~rr~K~lskrK~GTSHkl~~eEle~~lee~~E~ivvGTG~ 71 (121)
T COG1504 22 DIVIRPDG---KVERREKELSKRKYGTSHKLALEELEELLEEGPEVIVVGTGQ 71 (121)
T ss_pred cEEEecCC---ceehhhhhhhhhhcCcccccCHHHHHHHHhcCCcEEEEecCc
Confidence 55554432 333333 3467789999999999999999999998876543
No 11
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=38.45 E-value=60 Score=30.53 Aligned_cols=106 Identities=17% Similarity=0.299 Sum_probs=64.2
Q ss_pred cccCceeee-----CceEEEEEEEcCc-----------------------hHHHHHHHhhcccccc-cccCCCCCceeEE
Q 030174 55 TVRSFGIRR-----NEKIACYVTVRGD-----------------------KAMQLLESGLKVKEYE-LLRRNFSDTGCFG 105 (182)
Q Consensus 55 sia~FkiRk-----G~piG~kVTLRG~-----------------------~my~FL~klirirdf~-l~~~sfD~~GN~s 105 (182)
.++.|.++- +.++-|-||-+|- ++.+||++. -..+.. ......|+.+.|+
T Consensus 247 ~~~~Y~f~~~~~~~~~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~-G~~nm~~ty~~~~d~~~~~~ 325 (435)
T TIGR02889 247 GIPTYSFEVKDPGRKARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKI-GFKDMEPTESDKYDNVGVIS 325 (435)
T ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHc-CcccceehhhhccCCEEEEE
Confidence 456666433 2457788887775 345566655 233334 4444568888888
Q ss_pred eccccc-ccc-----cccccC-CCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHHHhHhhccE
Q 030174 106 FGIQEH-IDL-----GIKYDP-STGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171 (182)
Q Consensus 106 fGi~e~-~~F-----Ei~yD~-~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~~~~~~~~~ 171 (182)
|-=... +.+ .+.... .-.+-|++ +++|-...+. +.+|+. .||.|||.+.+-..+.|
T Consensus 326 yv~~~~gV~iYpd~IkVkVALDnGeIiGf~------a~~Yl~~h~~---R~ip~p-kls~eeAr~~vnp~l~v 388 (435)
T TIGR02889 326 YVYVQNDVRVYPDQIKVKVALDDGDVVGFD------ARQYLTSHRK---RTLPKP-KLTEEEARSKVNKHLKI 388 (435)
T ss_pred EEEeeCCEEEcCCeEEEEEEccCCeEEEEe------cccchhhccc---ccCCCC-cCCHHHHHHhhCCCcee
Confidence 854322 222 122222 23466654 7788877765 367755 99999999998776654
No 12
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=37.44 E-value=11 Score=16.27 Aligned_cols=7 Identities=43% Similarity=1.208 Sum_probs=5.0
Q ss_pred eeEEecc
Q 030174 102 GCFGFGI 108 (182)
Q Consensus 102 GN~sfGi 108 (182)
|-|+||+
T Consensus 2 gpy~fgl 8 (8)
T PF08261_consen 2 GPYSFGL 8 (8)
T ss_pred CcccccC
Confidence 6677875
No 13
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=33.61 E-value=25 Score=25.80 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=15.3
Q ss_pred cccChHHHHHHhHhhccEEEecC
Q 030174 154 HRVTKEDAMKWFQVKYEGVILNK 176 (182)
Q Consensus 154 hr~~~~ea~~~~~~~~~~~~~~~ 176 (182)
+.++-.||.+||.+.||+++...
T Consensus 74 ~~~~f~eAv~~l~~~~~i~i~~~ 96 (97)
T PF01807_consen 74 EGCSFKEAVKWLAEEFGIEIPNE 96 (97)
T ss_dssp HT--HHHHHHHHHHHHT---GTT
T ss_pred hCCCHHHHHHHHHHHhCCCCCCC
Confidence 45688999999999999998754
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=25.79 E-value=1.9e+02 Score=19.10 Aligned_cols=45 Identities=13% Similarity=0.341 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCc---ee------eeeeccccCceeeeCceEEEEEEEcC
Q 030174 31 RLTRAAKVLEQLSGQTP---VF------SKARYTVRSFGIRRNEKIACYVTVRG 75 (182)
Q Consensus 31 ~L~~a~~~L~~ITGQkp---~~------tkAKksia~FkiRkG~piG~kVTLRG 75 (182)
.+......++..+|-.| .+ ..-.++++.+++..|.-+-+.+.|+|
T Consensus 22 tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred cHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 34445566666666543 12 22356789999999999999999887
No 15
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=23.21 E-value=67 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=17.0
Q ss_pred EEEEEcCchHHHHHHHhhcccccc
Q 030174 69 CYVTVRGDKAMQLLESGLKVKEYE 92 (182)
Q Consensus 69 ~kVTLRG~~my~FL~klirirdf~ 92 (182)
|=+.+|...|..||.+|++--.++
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~ 25 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQ 25 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEE
T ss_pred EEEEehhHHHHHHHHHHHHHCCcE
Confidence 567899999999999999655555
No 16
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.77 E-value=46 Score=25.32 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=18.7
Q ss_pred CcccChHHHHHHhHhhccEEEe
Q 030174 153 QHRVTKEDAMKWFQVKYEGVIL 174 (182)
Q Consensus 153 ~hr~~~~ea~~~~~~~~~~~~~ 174 (182)
+..+++.||.+||.+++|+.+.
T Consensus 76 ~~~~~R~~aY~wLA~~lgi~~~ 97 (102)
T PF11672_consen 76 SGHMSRSDAYRWLAKKLGIPVE 97 (102)
T ss_pred hCcccHHHHHHHHHHHcCCChH
Confidence 5568899999999999998653
No 17
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=20.76 E-value=36 Score=16.09 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=4.9
Q ss_pred eeEEecc
Q 030174 102 GCFGFGI 108 (182)
Q Consensus 102 GN~sfGi 108 (182)
..|+|||
T Consensus 4 ~~Y~FGL 10 (11)
T PF05953_consen 4 PMYSFGL 10 (11)
T ss_pred CccccCc
Confidence 4578886
No 18
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=20.08 E-value=61 Score=23.97 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=13.7
Q ss_pred cccChHHHHHHhHhhccEE
Q 030174 154 HRVTKEDAMKWFQVKYEGV 172 (182)
Q Consensus 154 hr~~~~ea~~~~~~~~~~~ 172 (182)
-||+|.||.+|=.+.||-.
T Consensus 2 frITK~eA~~FW~~~Fg~r 20 (85)
T PF02761_consen 2 FRITKAEAAEFWKTSFGKR 20 (85)
T ss_dssp ---SSHHHHHHHHHHHTT-
T ss_pred ceeccHHHHHHHHHHCCCC
Confidence 4899999999999888853
Done!