Query 030174
Match_columns 182
No_of_seqs 146 out of 923
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_E 60S ribosomal protein L 100.0 6.2E-76 2.1E-80 480.7 13.1 177 1-177 1-177 (180)
2 4a17_D L21, RPL11, 60S ribosom 100.0 1.5E-74 5.2E-79 469.7 14.4 168 7-174 5-172 (172)
3 1vq8_D 50S ribosomal protein L 100.0 6.8E-72 2.3E-76 456.2 12.4 168 5-174 8-176 (177)
4 3j21_E 50S ribosomal protein L 100.0 6.5E-72 2.2E-76 459.2 10.7 171 5-175 14-185 (186)
5 2zkr_d 60S ribosomal protein L 100.0 5.4E-71 1.8E-75 451.4 10.6 174 4-177 5-178 (178)
6 3r8s_F 50S ribosomal protein L 100.0 8.2E-56 2.8E-60 361.5 12.6 137 4-140 18-164 (177)
7 1iq4_A 50S ribosomal protein L 100.0 1.1E-55 3.8E-60 361.2 12.8 135 4-138 19-163 (179)
8 1mji_A 50S ribosomal protein L 100.0 1.7E-55 5.7E-60 361.0 12.9 135 4-138 22-166 (182)
9 3bbo_H Ribosomal protein L5; l 100.0 1.7E-54 5.7E-59 363.4 10.0 139 4-142 34-182 (220)
10 2nrq_A Hypothetical protein OR 19.6 1.8E+02 0.0061 22.4 5.2 87 63-169 49-146 (159)
No 1
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=100.00 E-value=6.2e-76 Score=480.66 Aligned_cols=177 Identities=91% Similarity=1.408 Sum_probs=168.3
Q ss_pred CCCCCCCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 1 MASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 1 ~~~~~~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
|++....+|||++|+|+|||||+|+|+|++.|+.|..+|++||||+|++|+||++|++||||+||||||||||||++||+
T Consensus 1 ~~~~~~~~n~m~vPkI~KIvlN~gvGea~~~L~~A~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~m~e 80 (180)
T 3iz5_E 1 MSTEKKQLNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTIRGEKAMQ 80 (180)
T ss_dssp CCCCTTTCCTTSSCEEEEEEEEEECCTTTSCSSTHHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHHH
T ss_pred CCcccccCCCccCcEEEEEEEEcCCchhHHHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEEEEEccHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHH
Q 030174 81 LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED 160 (182)
Q Consensus 81 FL~klirirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~e 160 (182)
||++|+|+|||+|+.++||++|||+|||+||++||++|||+++++||||+|||++||||+++|++++++||++||||+||
T Consensus 81 FL~klirirdf~l~~~sFD~~GN~sfGI~E~i~Fei~yD~~~~i~GmdI~ivt~RpG~rv~~r~~~~~~i~~~hrv~kee 160 (180)
T 3iz5_E 81 LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGMKYDPSTGIYGMDFFVVLERAGYRVSRRRRCKARVGIHQRVTKED 160 (180)
T ss_dssp HHHHHHHSSCSCCCSTTBCTTSCEEEECCTTSSSCCSSSCSCCCCCCEEEEEEECGGGHHHHSSSSCCCCCTTTSCCHHH
T ss_pred HHHHHHhhhhcccCccccCCCceeeeccchheeeecccccccCccceeEEEEEcCCccchhhcccccCCCCccceeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccEEEecCc
Q 030174 161 AMKWFQVKYEGVILNKS 177 (182)
Q Consensus 161 a~~~~~~~~~~~~~~~~ 177 (182)
||+|||++|||+|+|+.
T Consensus 161 a~~~~~~~~~~~i~~~~ 177 (180)
T 3iz5_E 161 AMKWFQVKYEGVILNKS 177 (180)
T ss_dssp HHHHHHHSCC-------
T ss_pred HHHHHHHhcCEEEcccC
Confidence 99999999999999864
No 2
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=100.00 E-value=1.5e-74 Score=469.72 Aligned_cols=168 Identities=67% Similarity=1.113 Sum_probs=166.0
Q ss_pred CCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHHhh
Q 030174 7 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL 86 (182)
Q Consensus 7 y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~kli 86 (182)
.+|||++|+|+|||||+|+|+|++.|+.|..+|++||||+|++|+||++|++||||+||||||||||||++||+||++|+
T Consensus 5 ~~n~m~vPkI~KIvlN~gvgea~~~L~~A~~~L~~ITGQkPv~tkAKksi~~FkiR~g~pIG~kVTLRG~~m~eFL~kll 84 (172)
T 4a17_D 5 KENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILTRGL 84 (172)
T ss_dssp CCCGGGCCEEEEEEEEEECCCSSHHHHHHHHHHHHHHSSCCEEEEECSCBTTTTBCSSEEEEEEEEECHHHHHHHHHHHH
T ss_pred cCCcccCcEEEEEEEEcCcHHHHHHHHHHHHHHHHccCCccEEEEeccccccccccCCCEEEEEEEEccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHHHhH
Q 030174 87 KVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQ 166 (182)
Q Consensus 87 rirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~~~~ 166 (182)
|+|||+|+.++||++|||+|||+||++||++|||+++++||||+|||++||||+++|++++++||++||||+||||+|||
T Consensus 85 rirdf~l~~~sFD~~GN~sfGi~e~i~Fei~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hrv~keea~~~~~ 164 (172)
T 4a17_D 85 KVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEECINWFK 164 (172)
T ss_dssp HHTTTEECGGGBCTTSCEEEEECCGGGGTCCCCGGGCCCCEEEEEEEECGGGHHHHCSTTCCCCCTTTSCCHHHHHHHHH
T ss_pred hhhhccCCCcCcCCCceEEEccccccccccccccccCccceeEEEEEcCCccchhhcccccCCCCccceeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccEEEe
Q 030174 167 VKYEGVIL 174 (182)
Q Consensus 167 ~~~~~~~~ 174 (182)
++|||+++
T Consensus 165 ~~~~~~~~ 172 (172)
T 4a17_D 165 TEFEGNVY 172 (172)
T ss_dssp HHHCCEEC
T ss_pred HhcCeEeC
Confidence 99999985
No 3
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=100.00 E-value=6.8e-72 Score=456.20 Aligned_cols=168 Identities=37% Similarity=0.680 Sum_probs=139.1
Q ss_pred CCCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHH
Q 030174 5 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES 84 (182)
Q Consensus 5 ~~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~k 84 (182)
.+++|+|++|+|+|||||+|+|++++.|+.|..+|++||||+|++|+||+||++||||+||||||+|||||++||+||+|
T Consensus 8 ~~~~N~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkg~pIG~kVTLRG~~myeFL~r 87 (177)
T 1vq8_D 8 GGDFHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQT 87 (177)
T ss_dssp ---CCTTTSCEEEEEEEEEECCC-----CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHHHHH
T ss_pred cccCCchhcCEEEEEEEEcCcchHHHHHHHHHHHHHHHhCCCcEEEecccccccccccCCCeeEEEEEEccHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHH
Q 030174 85 GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMK 163 (182)
Q Consensus 85 lirirdf~l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~ 163 (182)
|+++|| |+.++||++|||+|||+||++| |++||++++++||||+|||++||||+++|+|++++||++||||+||||+
T Consensus 88 llrvrd--l~~~sfd~~GN~sfGi~e~i~FPEI~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hr~~k~ea~~ 165 (177)
T 1vq8_D 88 ALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVA 165 (177)
T ss_dssp HGGGSC--CCGGGBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCCCCGGGSCCHHHHHH
T ss_pred HHHhcc--CCccccCCCceEEEecceeecCccccccccCCcccceEEEEeCCCccchhhhhhccccCCCCcEeCHHHHHH
Confidence 999999 9999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccEEEe
Q 030174 164 WFQVKYEGVIL 174 (182)
Q Consensus 164 ~~~~~~~~~~~ 174 (182)
|||++|||+|+
T Consensus 166 ~~~~~~~~~i~ 176 (177)
T 1vq8_D 166 FIESTYDVEVS 176 (177)
T ss_dssp HHHTTTSCCC-
T ss_pred HHHHhcCEEEe
Confidence 99999999986
No 4
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.5e-72 Score=459.23 Aligned_cols=171 Identities=45% Similarity=0.783 Sum_probs=167.7
Q ss_pred CCCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHH
Q 030174 5 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES 84 (182)
Q Consensus 5 ~~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~k 84 (182)
.|++|+|++|+|+|||||+|+|+|++.|..|..+|++||||+|++|+||++|++||||+||||||+|||||++||+||+|
T Consensus 14 ~~~~N~m~vPkI~KIvlN~gvgea~~~L~~a~~~Le~ITGQkPv~tkAKksia~FkiRkg~pIG~kVTLRG~~myeFL~r 93 (186)
T 3j21_E 14 DWEAHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKR 93 (186)
T ss_dssp HHHHCTTSSCEEEEEEEEECSCCCTTSCCSHHHHHHHHHSSCCEEECCCSCCSSSCCSTTCCCEEEEEECSHHHHHHHHH
T ss_pred hccCCchhccEeeEEEEEcCcchHHHHHHHHHHHHHHhhCCCcEEEEccccccccCcCCCCceeeEEEEcChhHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHH
Q 030174 85 GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMK 163 (182)
Q Consensus 85 lirirdf~l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~ 163 (182)
|+.+.||.|+.++||++|||+|||+||++| |++|||+++++||||+|||+|||||+++|+|+++|||++||||+||||+
T Consensus 94 ll~v~d~gl~~~sFD~~GN~sfGi~E~i~FPeI~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hrv~keea~~ 173 (186)
T 3j21_E 94 LLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMV 173 (186)
T ss_dssp HHHHSCSSBCSSSBCTTSCEEECCCSCCCCTTTSSCSSCCCCCCEEEEEEECSTTHHHHSSTTCCCCCSTTSCCHHHHHH
T ss_pred HHHHhccCCCccccCCCceEEEcCcceeecccccccccccccceeEEEEecCCcceeeecccccCcCCcceeeCHHHHHH
Confidence 999989999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccEEEec
Q 030174 164 WFQVKYEGVILN 175 (182)
Q Consensus 164 ~~~~~~~~~~~~ 175 (182)
|||++|||+|+.
T Consensus 174 ~~~~~~~~~v~~ 185 (186)
T 3j21_E 174 YMMEEFGVEIVE 185 (186)
T ss_dssp HHHHHSSCBCCB
T ss_pred HHHHHcCEEEec
Confidence 999999999875
No 5
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.4e-71 Score=451.41 Aligned_cols=174 Identities=70% Similarity=1.149 Sum_probs=164.0
Q ss_pred CCCCCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE 83 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~FL~ 83 (182)
..+++|+|++|+|+|||||+|+|++++.|+.|..+|++||||+|++|+||+||++||||+||||||+|||||++||+||+
T Consensus 5 ~~~~~n~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~myeFL~ 84 (178)
T 2zkr_d 5 QGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILE 84 (178)
T ss_dssp -----CTTTSCEEEEEEEEECCSSSCSSSCTTHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHHHHHH
T ss_pred ccccCCcccccEEEEEEEECCchhHHHHHHHHHHHHHHHhCCCeEEEecccccccccccCCCEEEEEEEEccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHH
Q 030174 84 SGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMK 163 (182)
Q Consensus 84 klirirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yD~~~~i~GmdItivt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~ 163 (182)
||+.+|||+|+.++||++|||+|||+||++||++||++++++||||+||++++|++.++|++++++||++||||+||||+
T Consensus 85 rll~vrdf~l~~~sfd~~GN~sfGi~E~i~FEi~yD~~~~i~GmdItivL~~~G~pf~~r~~~~~~i~~~hr~~k~e~~~ 164 (178)
T 2zkr_d 85 KGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMR 164 (178)
T ss_dssp HHHHHSCSCBCTTTBCTTSCEEESSSSCSSSSCCCSSSCCSSCEEEEEEEECTTTHHHHSSSSCCCCCTTTSCCHHHHHH
T ss_pred HHHhhccccccccCcCCCceEEEecchheeeeeeecccCCccCccEEEEEcCCCcEEeecccccccCCCCceECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccEEEecCc
Q 030174 164 WFQVKYEGVILNKS 177 (182)
Q Consensus 164 ~~~~~~~~~~~~~~ 177 (182)
|||++|||+|+|++
T Consensus 165 ~~~~~~~~~i~~~~ 178 (178)
T 2zkr_d 165 WFQQKYDGIILPGK 178 (178)
T ss_dssp HHHTTTCCBC----
T ss_pred HHHHhCCEEEecCC
Confidence 99999999999764
No 6
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=100.00 E-value=8.2e-56 Score=361.47 Aligned_cols=137 Identities=30% Similarity=0.546 Sum_probs=131.4
Q ss_pred CCCCCCCCCceeeeEEEEEccCCchh---HHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a~---~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
..+|+|+|++|+|+|||||+|+|+|. +.|+.|..+|++||||+|++|+||+||++||||+||||||||||||++||+
T Consensus 18 ~~~y~N~m~vP~i~KIvln~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksi~~FkiR~g~piG~kVTLRg~~m~~ 97 (177)
T 3r8s_F 18 EFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWE 97 (177)
T ss_dssp HHTCSSTTSSCCEEEEEEBCCCCCTTSCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBCTTCEEEEEEEECSHHHHH
T ss_pred hhCCCCccccceeeEEEEEecCchhhhCHHHHHHHHHHHHHhhCCCceEeecccccccCCCCCCCEeeEEEEEccHHHHH
Confidence 45899999999999999999999984 489999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeeccccee
Q 030174 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 140 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r~ 140 (182)
||+||+ |+|||+ |+.++||++|||+|||+||++| |++||++++++||||+|||+|+++..
T Consensus 98 FL~kli~~vlPrirdf~Gl~~~sfd~~GN~~fGi~e~~~FPEi~yD~~~~i~GmdI~ivtta~td~e 164 (177)
T 3r8s_F 98 FFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEE 164 (177)
T ss_dssp HHHHHHHTTTTTSTTCCCCCTTCBCSSSCEECCCSCGGGSSSSCSSSCCSCCCCBCEEEESCSSHHH
T ss_pred HHHHHHHHhccccccccccCccccCCCceEeeeccccccCCCccccccCCccceeEEEEeCcCCHHH
Confidence 999999 899999 9999999999999999999999 99999999999999999999986543
No 7
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=100.00 E-value=1.1e-55 Score=361.21 Aligned_cols=135 Identities=26% Similarity=0.534 Sum_probs=130.6
Q ss_pred CCCCCCCCCceeeeEEEEEccCCch---hHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a---~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
..+|+|+|++|+|+|||||+|+|++ .+.|+.|..+|++||||+|++|+||++|++||||+|+||||||||||++||+
T Consensus 19 k~~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g~pIG~kVTLRg~~my~ 98 (179)
T 1iq4_A 19 KFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYE 98 (179)
T ss_dssp HHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCCTTCEEEEEEEECHHHHHH
T ss_pred HhCCCCcccCceeEEEEEEecCchhhcChHHHHHHHHHHHHHhCCCcEEeecccccccccccCCCeeEEEEEEccHHHHH
Confidence 3589999999999999999999998 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccc
Q 030174 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 138 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~ 138 (182)
||+||+ |+|||+ ++.++||++|||+|||+||++| ||+||++++++||||+|||+|+++
T Consensus 99 FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdI~ivtta~td 163 (179)
T 1iq4_A 99 FLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTD 163 (179)
T ss_dssp HHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESCSSH
T ss_pred HHHHHHHHhcccccccccCCccccCCCceEEEecchhhcCccccccccCCccCceEEEEeeeCCH
Confidence 999999 789999 9999999999999999999999 999999999999999999999864
No 8
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=100.00 E-value=1.7e-55 Score=361.02 Aligned_cols=135 Identities=27% Similarity=0.477 Sum_probs=130.7
Q ss_pred CCCCCCCCCceeeeEEEEEccCCch---hHHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a---~~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
..+|+|+|++|+|+|||||+|+|++ .+.|+.|..+|++||||+|++|+||++|++||||+|+||||||||||++||+
T Consensus 22 kf~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g~pIG~kVTLRg~~my~ 101 (182)
T 1mji_A 22 RFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWI 101 (182)
T ss_dssp HSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSSSCCSEEEEEEEECHHHHHH
T ss_pred HhCCCCcccCceeeEEEEEcCCchhhhChHHHHHHHHHHHHHhCCCcEEeecccccccccccCCCeeEEEEEEccHHHHH
Confidence 4689999999999999999999998 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccc
Q 030174 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 138 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~ 138 (182)
||+||+ |+|||+ ++.++||++|||+|||+||++| ||+||++++++||||+|||+|+++
T Consensus 102 FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdItivtta~td 166 (182)
T 1mji_A 102 FLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETD 166 (182)
T ss_dssp HHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEESCSSH
T ss_pred HHHHHHHHhccccccccccCccccCCCceEEEecchhhcCCcccccccCCccCceEEEEeccCCH
Confidence 999999 789999 9999999999999999999999 999999999999999999999864
No 9
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=1.7e-54 Score=363.42 Aligned_cols=139 Identities=24% Similarity=0.393 Sum_probs=133.3
Q ss_pred CCCCCCCCCceeeeEEEEEccCCchh---HHHHHHHHHHHHhhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030174 4 DKKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~y~n~m~iP~i~KIvln~gvg~a~---~~L~~a~~~L~~ITGQkp~~tkAKksia~FkiRkG~piG~kVTLRG~~my~ 80 (182)
..+|+|+|++|+|+|||||+|+|++. +.|+.|..+|++||||+|++|+||++|++||||+||||||+|||||++||+
T Consensus 34 k~~y~N~m~vPki~KIvin~gvgea~~d~k~L~~A~~~L~~ITGQkPv~tkAKksIa~FkiRkg~pIG~kVTLRG~~Mye 113 (220)
T 3bbo_H 34 EFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYS 113 (220)
T ss_dssp SSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCSCCCSSCCCTTCBCCCCCEECTHHHHH
T ss_pred HhcCCCcccCceEEEEEEEcccchhhhchHHHHHHHHHHHHHhCCCcEEeecccccccccccCCCeeEEEEEEccHHHHH
Confidence 56899999999999999999999985 489999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeee
Q 030174 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGR 142 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yD~~~~i~GmdItivt~~~g~r~a~ 142 (182)
||+||+ |+|||+ |+.++||++|||+|||+||++| ||+||++++++||||+|||+|+++..++
T Consensus 114 FLdrll~iaLPRirdf~Gl~~~sFD~~GN~sfGi~e~~~FPEI~yD~~~~i~GmdItivTtA~td~ea~ 182 (220)
T 3bbo_H 114 FLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAY 182 (220)
T ss_dssp HHHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSCSSCCCEEEEEEESCSSGGGTH
T ss_pred HHHHHHHHhccccccccccCccccCCCceEEEeccccccCCCcccCccCCcccceEEEEeccCCHHHHH
Confidence 999999 789999 9999999999999999999999 9999999999999999999999765554
No 10
>2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=19.62 E-value=1.8e+02 Score=22.39 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=55.1
Q ss_pred eCceEE-EEEEEcCchHHHHHHHhh-ccc--ccc-cccC---CCCCceeEEecccccc-cc--cccccCCCCccccEEEE
Q 030174 63 RNEKIA-CYVTVRGDKAMQLLESGL-KVK--EYE-LLRR---NFSDTGCFGFGIQEHI-DL--GIKYDPSTGIYGMDFFV 131 (182)
Q Consensus 63 kG~piG-~kVTLRG~~my~FL~kli-rir--df~-l~~~---sfD~~GN~sfGi~e~~-~F--Ei~yD~~~~i~GmdIti 131 (182)
-|.||. +.+.|.++.+..||++|. .++ |.. +... -.|+ |.+.|=+.=|. .| ++.+....+. |.|
T Consensus 49 ~Gn~I~il~~~i~~~~~~~~l~~l~~ll~~~~~~~l~~~l~~r~~~-~~l~lrldKQa~Ay~G~v~~~dgdd~----I~v 123 (159)
T 2nrq_A 49 YGNKIIILEYRFDRKSGEQFFKIILEKIETSELMLILTTIDSHIDG-SKLYLRFDKQYLIAEHRLVLKEGDDV----IKC 123 (159)
T ss_dssp SSCEEEEEEEEECHHHHHHHHHHHHTTSCHHHHHHHHTC--CCEET-TEEEEEECHHHHHHHSCCCBCCSSSS----EEE
T ss_pred ecCcEEEEEEEEcchhHHHHHHHHHHHhhHHHHHHHHHHHHhceeC-CEEEEEEcChHHHhCCeEEeecCCCc----EEE
Confidence 378887 578889999999999999 444 333 2221 1233 67889998887 76 4555422222 666
Q ss_pred EeecccceeeeeccccCCCCCCcccChHHHHHHhHhhc
Q 030174 132 VLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKY 169 (182)
Q Consensus 132 vt~~~g~r~a~r~~~~~~i~~~hr~~~~ea~~~~~~~~ 169 (182)
...-++|. ++ -.|++.+|+....
T Consensus 124 ~I~~~~y~------------~k---~~e~~r~~~~~~~ 146 (159)
T 2nrq_A 124 IISFNTSL------------EN---IKEEIKKLVNSRI 146 (159)
T ss_dssp EEECSCC--------------C---HHHHHHHHHHHHC
T ss_pred EEEeccch------------HH---HHHHHHHHHHhhh
Confidence 66556662 11 5677888887754
Done!