Your job contains 1 sequence.
>030175
MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE
STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGR
GRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRS
RT
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030175
(182 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 491 6.9e-47 1
TAIR|locus:2039975 - symbol:RS31a "arginine/serine-rich s... 472 7.1e-45 1
TAIR|locus:2131864 - symbol:RS40 "arginine/serine-rich sp... 389 4.4e-36 1
TAIR|locus:2173088 - symbol:RS41 "arginine/serine-rich sp... 380 4.0e-35 1
DICTYBASE|DDB_G0275409 - symbol:DDB_G0275409 "RNA-binding... 161 2.9e-13 2
ZFIN|ZDB-GENE-040426-1415 - symbol:zgc:65772 "zgc:65772" ... 157 1.8e-11 1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 146 2.5e-10 1
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 145 3.2e-10 1
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 148 3.5e-10 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 118 4.1e-10 2
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 114 4.2e-10 2
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 114 4.2e-10 2
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 119 6.3e-10 2
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 146 7.4e-10 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 145 8.0e-10 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 141 8.4e-10 1
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 116 8.8e-10 2
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 140 1.1e-09 1
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 140 1.1e-09 1
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 116 1.3e-09 2
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 116 1.3e-09 2
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 139 1.4e-09 1
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 115 2.3e-09 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 119 2.6e-09 2
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 114 2.8e-09 2
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 140 2.9e-09 1
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 115 2.9e-09 2
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 139 3.8e-09 1
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 114 4.1e-09 2
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 114 4.6e-09 2
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 114 4.6e-09 2
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 114 4.6e-09 2
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 138 4.7e-09 1
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 115 4.8e-09 2
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 114 4.8e-09 2
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 114 4.8e-09 2
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 114 4.8e-09 2
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 138 4.9e-09 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 137 6.4e-09 1
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 132 7.6e-09 1
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 132 7.6e-09 1
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 113 7.8e-09 2
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 119 8.7e-09 2
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 119 8.8e-09 2
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 119 8.9e-09 2
FB|FBgn0004587 - symbol:B52 "B52" species:7227 "Drosophil... 122 1.2e-08 2
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 112 1.5e-08 2
UNIPROTKB|Q3ZBU5 - symbol:FUSIP1 "Uncharacterized protein... 127 2.6e-08 1
UNIPROTKB|Q5JRI3 - symbol:SRSF10 "Serine/arginine-rich-sp... 127 2.6e-08 1
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 112 3.6e-08 2
SGD|S000002840 - symbol:NPL3 "RNA-binding protein" specie... 109 4.0e-08 2
UNIPROTKB|Q5JRI1 - symbol:SRSF10 "Serine/arginine-rich-sp... 125 4.2e-08 1
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 109 4.9e-08 2
FB|FBgn0011305 - symbol:Rsf1 "Repressor splicing factor 1... 110 5.9e-08 2
TAIR|locus:2025092 - symbol:SR45a "serine/arginine rich-l... 130 7.6e-08 1
UNIPROTKB|O75494 - symbol:SRSF10 "Serine/arginine-rich sp... 124 1.5e-07 1
MGI|MGI:1333805 - symbol:Srsf10 "serine/arginine-rich spl... 124 1.5e-07 1
UNIPROTKB|F2Z3T5 - symbol:Fusip1 "Protein Fusip1" species... 124 1.5e-07 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 115 1.6e-07 2
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 119 1.8e-07 1
UNIPROTKB|G4MSA5 - symbol:MGG_04482 "Uncharacterized prot... 120 1.8e-07 1
UNIPROTKB|Q7ZTJ8 - symbol:srsf10 "MGC53149 protein" speci... 122 2.4e-07 1
UNIPROTKB|F1Q237 - symbol:F1Q237 "Uncharacterized protein... 121 3.2e-07 1
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 119 3.2e-07 1
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"... 119 3.2e-07 1
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 119 3.2e-07 1
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 119 3.2e-07 1
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 119 3.2e-07 1
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 119 3.2e-07 1
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 119 3.2e-07 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 112 3.3e-07 2
POMBASE|SPBC11C11.08 - symbol:srp1 "SR family protein, hu... 121 3.7e-07 1
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 116 3.8e-07 1
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 115 4.8e-07 1
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 115 4.8e-07 1
UNIPROTKB|G3MWK4 - symbol:SRSF12 "Uncharacterized protein... 99 5.9e-07 2
ZFIN|ZDB-GENE-040426-1938 - symbol:rbm4.3 "RNA binding mo... 120 7.6e-07 1
UNIPROTKB|Q8WXF0 - symbol:SRSF12 "Serine/arginine-rich sp... 98 9.5e-07 2
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl... 113 1.6e-06 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 111 2.3e-06 1
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 113 3.1e-06 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 110 3.8e-06 2
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 106 4.3e-06 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 110 4.5e-06 2
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z... 112 4.8e-06 1
TAIR|locus:2199837 - symbol:RSZ21 "RS-containing zinc fin... 110 5.4e-06 1
TAIR|locus:2089094 - symbol:AT3G27700 species:3702 "Arabi... 117 6.6e-06 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 104 7.0e-06 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 112 7.7e-06 1
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b... 111 9.7e-06 1
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 85 9.8e-06 2
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 85 9.8e-06 2
CGD|CAL0003843 - symbol:NPL3 species:5476 "Candida albica... 103 1.1e-05 2
UNIPROTKB|Q59ZV3 - symbol:NPL3 "Putative uncharacterized ... 103 1.1e-05 2
UNIPROTKB|D4A5K7 - symbol:Rbm28 "RNA binding motif protei... 113 1.3e-05 1
RGD|1311336 - symbol:Rbm28 "RNA binding motif protein 28"... 113 1.4e-05 1
SGD|S000001016 - symbol:RIM4 "Putative RNA-binding protei... 112 1.7e-05 1
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 112 1.8e-05 1
UNIPROTKB|Q9BRL6 - symbol:SRSF8 "Serine/arginine-rich spl... 110 1.9e-05 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 109 2.0e-05 2
WARNING: Descriptions of 66 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 105/172 (61%), Positives = 121/172 (70%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
+N +PTKTLFVINFDPIRT+E DI++HFEPYG V +VRIRRNF+FVQFETQE+ATKALE+
Sbjct: 87 SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEA 146
Query: 62 TDRSKLVDRVISVEYALKDDSERDDRYD--SPRRG---GYGRHXXXXXXXXXXXXXXX-- 114
T RSK++DRV+SVEYALKDD ERDDR SPRR Y R
Sbjct: 147 TQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRP 206
Query: 115 XXDYGRGRSPAYDRYNGPV-YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
DYGR RSP YDRY GP Y++RRSPD+GR S Y R+RSP Y R RS
Sbjct: 207 SPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSSD---YGRQRSPGYDRYRS 255
Score = 118 (46.6 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 28/52 (53%), Positives = 31/52 (59%)
Query: 117 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNF 168
D GRSP R PVY +R SPD+GR P P RR SPDYGR RSP +
Sbjct: 171 DRNGGRSPR--RSLSPVYRRRPSPDYGRR--PSPGQGRRPSPDYGRARSPEY 218
Score = 109 (43.4 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRSPNFG 169
Y R SP Y R P +R SPD+GR RSP YDR + P Y R RSP++G
Sbjct: 186 YRRRPSPDYGRRPSPGQGRRPSPDYGRARSPE--YDRYKGPAAYERRRSPDYG 236
Score = 107 (42.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67
+ +FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 2 RPVFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 68 --VDRVISVEYA 77
R +SVE+A
Sbjct: 61 GYEKRRLSVEWA 72
Score = 104 (41.7 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 26/52 (50%), Positives = 29/52 (55%)
Query: 117 DYGRGRSPAYDRYNGPV-YDQRRSPDHGRH-----------------RSPVP 150
DYGR RSP YDRY GP Y++RRSPD+GR RSPVP
Sbjct: 209 DYGRARSPEYDRYKGPAAYERRRSPDYGRRSSDYGRQRSPGYDRYRSRSPVP 260
Score = 83 (34.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 135 DQRRSPDHGR--HRSPVPVYDRRRSPDYGRNRSPNFG 169
D+R + GR RS PVY RR SPDYGR SP G
Sbjct: 167 DERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQG 203
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 99/167 (59%), Positives = 118/167 (70%)
Query: 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 60
++NQRPTKTLFVINFDPIRTRERD++RHFEPYG VL+VR+RRNFAFVQF TQE+ATKAL+
Sbjct: 88 VSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALD 147
Query: 61 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 120
ST SKL+D+V+SVEYAL++ ER+DRY RR DY R
Sbjct: 148 STHNSKLLDKVVSVEYALREAGEREDRYAGSRR---------RRSPSPVYRRRPSPDYTR 198
Query: 121 GRSPAYDRYNGPV-YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
RSP YDRY GP Y++R+SPD+GR S R RSP Y R+RSP
Sbjct: 199 RRSPEYDRYKGPAPYERRKSPDYGRRSSDYG-RARARSPGYDRSRSP 244
Score = 119 (46.9 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN---------RSPNF 168
R SP Y R P Y +RRSP++ R++ P P Y+RR+SPDYGR RSP +
Sbjct: 182 RSPSPVYRRRPSPDYTRRRSPEYDRYKGPAP-YERRKSPDYGRRSSDYGRARARSPGY 238
Score = 110 (43.8 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 68
++V NFD TR D++R F +G V V ++ +AFV FE + +A A+ TD +
Sbjct: 4 VYVGNFD-YDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGY 62
Query: 69 -DRVISVEYALKDDSER 84
R +SVE+A ER
Sbjct: 63 GRRKLSVEWAKDFQGER 79
Score = 89 (36.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 144 RHRSPVPVYDRRRSPDYGRNRSPNF 168
R RSP PVY RR SPDY R RSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
Score = 56 (24.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 117 DYGRGR--SPAYDRYNGPVYDQR 137
DYGR R SP YDR P+ R
Sbjct: 227 DYGRARARSPGYDRSRSPIQRAR 249
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 83/167 (49%), Positives = 109/167 (65%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
++ RP+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++
Sbjct: 91 SSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDA 150
Query: 62 TDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRG 121
++ SKL+D+VISVEYA+KDD R + + SP R DYGRG
Sbjct: 151 SNNSKLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRG 209
Query: 122 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPN 167
SP Y +R SPD+GR RSP P RR SP+YGR+R N
Sbjct: 210 ASPVA-AYR----KERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGN 251
Score = 98 (39.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 2 KPVFCGNFE-YDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 68 --VDRVISVEYALKDDSERDDR 87
R + VE+ K + D R
Sbjct: 61 GRKGRRLRVEWT-KSERGGDKR 81
Score = 39 (18.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 137 RRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R SP++G+ SP + R Y SP
Sbjct: 307 RSSPENGQVESPGSIGRRDSDGGYDGAESP 336
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 84/161 (52%), Positives = 105/161 (65%)
Query: 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64
RP+KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+
Sbjct: 93 RPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNS 152
Query: 65 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSP 124
SKL+D+VISVEYA+KDD R + Y SP R DYGRG SP
Sbjct: 153 SKLMDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASP 211
Query: 125 -AYDRYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYGRN 163
A+ R +R SPD+GR RSP P R SPDY R+
Sbjct: 212 VAHKR-------ERTSPDYGRGRRSPSPYKRARLSPDYKRD 245
Score = 107 (42.7 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 31/92 (33%), Positives = 45/92 (48%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 2 KPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 68 --VDRVISVEYALKDDSERDDRYDSPRRGGYG 97
R + VE+ K+D R RR G
Sbjct: 61 GRTGRRLRVEWT-KNDRGGAGRSGGSRRSSSG 91
Score = 97 (39.2 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 120 RGRSPAYDRYN-GPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR-SPN 167
R RSP R + P +R SPD+GR SPV R SPDYGR R SP+
Sbjct: 182 RDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPS 231
Score = 64 (27.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/57 (47%), Positives = 29/57 (50%)
Query: 117 DYGRGR-SPA-YDRYN-GPVY--DQRRSPDHGRHRSPVPVYDRRRSPDYGR--NRSP 166
DYGRGR SP+ Y R P Y D RR R SP R RSP GR +RSP
Sbjct: 222 DYGRGRRSPSPYKRARLSPDYKRDDRRRE---RVASPENGAVRNRSPRKGRGESRSP 275
Score = 56 (24.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 119 GRGRS---PAYDRY----NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS-PNFG 169
GRG S P Y++ + P Y++RR RSP P Y++RR R++S P G
Sbjct: 268 GRGESRSPPPYEKRRESRSPPPYEKRRES-----RSPPP-YEKRRERSRSRSKSSPENG 320
Score = 53 (23.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 130 NGPVYDQRRSPDHGR--HRSPVPVYDRRRS---PDYGRNR 164
NG V + RSP GR RSP P RR S P Y + R
Sbjct: 257 NGAV--RNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRR 294
>DICTYBASE|DDB_G0275409 [details] [associations]
symbol:DDB_G0275409 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0275409 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_001134599.1 ProteinModelPortal:Q1ZXL1
EnsemblProtists:DDB0233346 GeneID:8619946 KEGG:ddi:DDB_G0275409
eggNOG:NOG288151 InParanoid:Q1ZXL1 OMA:DIKNGYA Uniprot:Q1ZXL1
Length = 737
Score = 161 (61.7 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 32/89 (35%), Positives = 56/89 (62%)
Query: 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64
+P++ +F++N++ +T DI PYGNV V++ +NF FV+FET ++A+KAL++ D
Sbjct: 222 KPSRAIFIVNYNVSKTTTNDIADWCSPYGNVNRVQMVKNFCFVEFETIDQASKALKALDL 281
Query: 65 SKLVDRVISVEY---ALKDDSERDDRYDS 90
++VEY ++ D+ + DRY S
Sbjct: 282 KSFDGHSLTVEYVNGSIDRDNYQRDRYGS 310
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 135 DQRRSPDH--GRHRSPVPVYDRRRSPDYGRNRSPN 167
D++RS H GR RS DRR + +Y N + N
Sbjct: 623 DKKRSRSHSRGRSRSRSHSGDRRNN-NYNNNNTNN 656
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 157 (60.3 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 52/179 (29%), Positives = 78/179 (43%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 57
P +LFV N +R D++R F YG ++ V I R FA++QFE +A
Sbjct: 8 PNSSLFVRNISD-ESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXD 117
AL + DR + R I +++A + D + + + R R D
Sbjct: 67 ALHNLDRKWVCGRQIEIQFA-QGDRKTPGQMKNKERSS-PRSSRYEDSDRRRRSRSRSYD 124
Query: 118 YGRGRSPAYDRY----NGPVYDQ-----RRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 167
R RSP+YDR + P + RRS +H RHR + R R+ R+RSP+
Sbjct: 125 RRRSRSPSYDRRRRRSDSPRESRGRTHSRRSREHDRHRGSTRDHHRSRTDAASRSRSPS 183
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 54/175 (30%), Positives = 73/175 (41%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 12 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERID 70
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXXXXXXXXXXXXX 112
++ +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 71 DSKEAMEHANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHFLGGGMGCSGG 124
Query: 113 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 125 GGGGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSRSRSYSP 179
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 48/162 (29%), Positives = 69/162 (42%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR-GGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAY 126
+ V+ Y D+ R PRR GGYGR R RS +
Sbjct: 84 ELRVQMARYGRPPDAHYSRRGAPPRRYGGYGRRSRSRSPRRRKHSRSRSRSRSRSRSRSR 143
Query: 127 DRYN---GPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
RY+ Y + RS R ++ P + +SP R+RS
Sbjct: 144 SRYSRSRSRSYSRSRSRSRSRSKTRTPRRSKSKSPSRSRSRS 185
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 148 (57.2 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 55/174 (31%), Positives = 72/174 (41%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 115 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERID 173
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXXXXXXXXXXXXX 112
++ +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 174 DSKEAMEHANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGAGR 227
Query: 113 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y RG YDRY YD R R RSP P Y R RS R+ SP
Sbjct: 228 RRDSYYDRGYDRGYDRYEE--YDYRY-----RRRSPSPYYSRYRSRSRSRSYSP 274
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 118 (46.6 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
R RE+D++R F+ YG +L V ++ + FV+F+ +A A+ + L + + VE+ +
Sbjct: 12 RAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIVEHTI 71
Query: 79 ---KDDSERDDRYDSPRRGGYG 97
+D R R + RGG G
Sbjct: 72 GQRRDGGNRSGRSNRYGRGGGG 93
Score = 53 (23.7 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 119 GRGRSPAYDRYNG---PVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
G RS A+ R P DQRR R RS RS Y R+RS
Sbjct: 312 GTHRSRAHSRSRSQTPPNADQRRE-SRSRSRSRSKSRSHSRSQSYSRSRS 360
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 114 (45.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 114 (45.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 119 (46.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 79 KDDSERDDRYDSPRRG-GYGR 98
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 54 (24.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHG--RHRSPVPVYDRRRSPDYGRNRS 165
R RS + + N P + RS R RS P RSP R+RS
Sbjct: 438 RSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRS 485
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 146 (56.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 59/179 (32%), Positives = 77/179 (43%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG++ V + R FAFV FE +
Sbjct: 129 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHID 187
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GR--HXXXXXXXXXXX 110
+A +A+E + +L R I V+Y++ R +P G Y GR H
Sbjct: 188 DAKEAMERANGMELDGRRIRVDYSITK------RPHTPTPGIYMGRPTHNGGGGGGGGSS 241
Query: 111 XXXXXXD--YGRGRSPAYDR-YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
D Y RG YDR Y+ YD R S R RSP P Y R RS R+ SP
Sbjct: 242 SGGRRRDSYYDRGYDRGYDRGYDE--YDYRYS----RRRSPSPYYSRYRSRSRSRSYSP 294
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 145 (56.1 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 55/176 (31%), Positives = 74/176 (42%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 111 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 169
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GR--HXXXXXXXXXXX 110
++ +A+E + +L R I V+Y++ R +P G Y GR H
Sbjct: 170 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 223
Query: 111 XXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 224 GGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDY-RRRSPSPYYSRYRSRSRSRSYSP 278
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 51/173 (29%), Positives = 70/173 (40%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 12 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 70
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXX 113
++ +A+E + +L R I V+Y++ R +P G Y
Sbjct: 71 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 124
Query: 114 XXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ RSP P Y R RS R+ SP
Sbjct: 125 GGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRSPSPYYSRYRSRSRSRSYSP 177
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 116 (45.9 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 51 (23.0 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R RSP + G + + RS R SP+PV P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSNSPLPV-----PPSKARSVSP 317
Score = 41 (19.5 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 169
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
+ RS + R N P+ P R SP P RS R++S
Sbjct: 292 KSRSRSQSRSNSPL---PVPPSKARSVSPPPKRATSRSRSRSRSKS 334
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 58/170 (34%), Positives = 76/170 (44%)
Query: 19 RTRERDIKRHFEPYGNV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVD- 69
+T D++R FE YG++ +H+ R + F FV+F + +A AL+ TD KLVD
Sbjct: 29 QTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDG 87
Query: 70 RVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 129
R + V A K D D+R R GG GR Y R RSP R
Sbjct: 88 RELRVTLA-KYDRPSDER--GGRGGGGGRRRSRSPRRRSRSPR-----YSRSRSPRRSRS 139
Query: 130 ---NGPVYDQRRSPDH-----GRHRSPVPVYD----RRRSPDYGRNRSPN 167
+ P D+R SPD R RSP P D RRS +RSP+
Sbjct: 140 RTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPS 189
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 58/170 (34%), Positives = 76/170 (44%)
Query: 19 RTRERDIKRHFEPYGNV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVD- 69
+T D++R FE YG++ +H+ R + F FV+F + +A AL+ TD KLVD
Sbjct: 29 QTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDG 87
Query: 70 RVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 129
R + V A K D D+R R GG GR Y R RSP R
Sbjct: 88 RELRVTLA-KYDRPSDER--GGRGGGGGRRRSRSPRRRSRSPR-----YSRSRSPRRSRS 139
Query: 130 ---NGPVYDQRRSPDH-----GRHRSPVPVYD----RRRSPDYGRNRSPN 167
+ P D+R SPD R RSP P D RRS +RSP+
Sbjct: 140 RTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPS 189
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 116 (45.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 49 (22.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSHSPLPA-----PPSKARSMSP 317
Score = 41 (19.5 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 169
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 116 (45.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 49 (22.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSHSPLPA-----PPSKARSMSP 317
Score = 41 (19.5 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 169
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 52/174 (29%), Positives = 71/174 (40%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 12 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 70
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXX 113
++ +A+E + +L R I V+Y++ R +P G Y
Sbjct: 71 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 124
Query: 114 XXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 125 GGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSP 178
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 115 (45.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 48 (22.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R RSP + G V + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDVKSKSRSRSQSRSHSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 169
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 119 (46.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 79 KDDSERDDRYDSPRRG-GYGR 98
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 48 (22.0 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHG--RHRSPVPVYDRRRSPDYGRNRS 165
R RS + + + P + RS R RS P RSP R+RS
Sbjct: 437 RSRSTSKSKPSLPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRS 484
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 114 (45.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 34 (17.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 119 GRGRSPAYDRYNG--PVYDQR 137
GRGR DR++ P D+R
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRR 99
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 140 (54.3 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 54/174 (31%), Positives = 73/174 (41%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 113 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXXXXXXXXXXXXX 112
++ +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 172 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 225
Query: 113 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 226 GGGG--GRRRDSYYDRGYDRGYDRYEDYDY-RRRSPSPYYSRYRSRSRSRSYSP 276
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 115 (45.5 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 47 (21.6 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 278 RSRSPK-ENGKGDIKSKSRSRSQSRSNSPLPA-----PPSKARSVSP 318
Score = 41 (19.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 169
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 139 (54.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 52/174 (29%), Positives = 71/174 (40%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 113 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXX 113
++ +A+E + +L R I V+Y++ R +P G Y
Sbjct: 172 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 225
Query: 114 XXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 226 GGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSP 279
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 114 (45.2 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
Score = 39 (18.8 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 134 YDQRRSPDHGRHRSPVPVYDR---RRSPDYGRNRS 165
+ + RS R RS R RRS Y R+RS
Sbjct: 183 HSRSRSRSRSRTRSSSRSRSRSRSRRSKSYSRSRS 217
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 114 (45.2 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 114 (45.2 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 114 (45.2 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 138 (53.6 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 54/175 (30%), Positives = 73/175 (41%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 113 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXXXXXXXXXXXXX 112
++ +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 172 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 225
Query: 113 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 226 GGGG--GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSP 278
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 115 (45.5 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 45 (20.9 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDIKSKSRSRSQSRSDSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 169
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 114 (45.2 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 114 (45.2 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 114 (45.2 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 42 (19.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 119 GRGRSPAYDRYNG--PVYDQRRSP 140
GRGR DR++ P D+R +P
Sbjct: 79 GRGRGRYSDRFSSRRPRNDRRNAP 102
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 138 (53.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 54/175 (30%), Positives = 73/175 (41%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 113 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXXXXXXXXXXXXX 112
++ +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 172 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 225
Query: 113 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 226 GGGG--GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSP 278
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 137 (53.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 55/177 (31%), Positives = 74/177 (41%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V + R FAFV FE +
Sbjct: 111 ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 169
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GR--HXXXXXXXXXXX 110
++ +A+E + +L R I V+Y++ R +P G Y GR H
Sbjct: 170 DSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTHSGGGGGGGGGG 223
Query: 111 XXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYGRNRSP 166
GR R YDR YD+ D+ R RSP P Y R RS R+ SP
Sbjct: 224 GGGGGGG-GRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSP 279
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 42/153 (27%), Positives = 63/153 (41%)
Query: 17 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76
P RERD++R + YG + ++ ++ FAFV FE +A A D + + +
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Query: 77 ALKDDSER-DDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 133
+ R +DR+ S PRR R RS + R PV
Sbjct: 70 EMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPV 129
Query: 134 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
+ RR + RSP P D +R + R+RSP
Sbjct: 130 RESRRRSES---RSPSPKRDLKR--EASRSRSP 157
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 42/153 (27%), Positives = 63/153 (41%)
Query: 17 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76
P RERD++R + YG + ++ ++ FAFV FE +A A D + + +
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Query: 77 ALKDDSER-DDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 133
+ R +DR+ S PRR R RS + R PV
Sbjct: 70 EMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPV 129
Query: 134 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
+ RR + RSP P D +R + R+RSP
Sbjct: 130 RESRRRSES---RSPSPKRDLKR--EASRSRSP 157
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 113 (44.8 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 45 (20.9 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDIKSKSRSRSQSRSDSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 169
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 119 (46.9 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 79 KDDSERDDRYDSPRRG-GYGR 98
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 43 (20.2 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR--RSPDYGRNRS 165
R RS + + N P + RS + RS R RSP R+RS
Sbjct: 440 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 487
Score = 35 (17.4 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 138 RSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
RS R +S R+RS + R+RS
Sbjct: 338 RSRSRSRSKSKDKRKGRKRSREESRSRS 365
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 119 (46.9 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 79 KDDSERDDRYDSPRRG-GYGR 98
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 43 (20.2 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR--RSPDYGRNRS 165
R RS + + N P + RS + RS R RSP R+RS
Sbjct: 442 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSGSRSPSRSRSRS 489
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 119 (46.9 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 79 KDDSERDDRYDSPRRG-GYGR 98
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 43 (20.2 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR--RSPDYGRNRS 165
R RS + + N P + RS + RS R RSP R+RS
Sbjct: 443 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 490
Score = 35 (17.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 138 RSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
RS R +S R+RS + R+RS
Sbjct: 341 RSRSRSRSKSKDKRKGRKRSREESRSRS 368
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 122 (48.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 17 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76
P RERD++R F+ YG + I+ + FV+FE +A A+ + +L+ + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 71
Query: 77 A--LKDDSERD---DRYDSPRRGGYGRH 99
A S RD DRY R GG GR+
Sbjct: 72 ARGTARGSNRDRYDDRYGGRRGGGGGRY 99
Score = 35 (17.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
R RS + + V + +S H R RS P +R R+RS
Sbjct: 255 RSRSRSRSNKSRDV-SKSKSKSHSRTRSRSP---KRERDSRSRSRS 296
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 112 (44.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYA 77
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D R +++E+A
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERRVTIEHA 73
Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 138 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
RS R RS R RS R+R+P
Sbjct: 188 RSRSRSRSRSRSRSRSRSRSRSRSRSRTP 216
Score = 36 (17.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 134 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
+ + RS R RS R RS R+RS
Sbjct: 180 HSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRS 211
Score = 36 (17.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
R RS + R ++S HRS +P S ++RS
Sbjct: 200 RSRSRSRSRSRSRSRTPKKSYSQKSHRSSLPASSPSPSSSKRKSRS 245
Score = 34 (17.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 138 RSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
RS R RS R RS R+RS
Sbjct: 186 RSRSRSRSRSRSRSRSRSRSRSRSRSRS 213
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 51/176 (28%), Positives = 71/176 (40%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYDR 126
Query: 110 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 164
DY RS Y N P RRS H + P ++ + S Y +R
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 51/176 (28%), Positives = 71/176 (40%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 110 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 164
DY RS Y N P RRS H + P ++ + S Y +R
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 112 (44.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVMVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD Y GG G
Sbjct: 74 RRDRDS-YGGGGGGGGG 89
Score = 41 (19.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRS 165
R RS A NG D R R SP + +SPD + R+RS
Sbjct: 319 RSRS-ASPMENG---DGERPKSASRSPSPQAEQSKYKSPDRHSRSRS 361
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 109 (43.4 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LFV F P+ +E ++ F P+G + V+I FAFV+FE E A KA+E +
Sbjct: 127 LFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFAN 185
Query: 70 RVISVEYA 77
+ + V Y+
Sbjct: 186 QPLEVVYS 193
Score = 58 (25.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 27/71 (38%), Positives = 29/71 (40%)
Query: 81 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYD--RYN-GPVYDQR 137
DS R YDSPR GGY R YG R YD R + GP D
Sbjct: 348 DSPRGG-YDSPR-GGYSR---GGYGGPRNDYGPPRGSYGGSRG-GYDGPRGDYGPPRDAY 401
Query: 138 RSPDHGRHRSP 148
R+ D R RSP
Sbjct: 402 RTRDAPRERSP 412
Score = 52 (23.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 23/79 (29%), Positives = 25/79 (31%)
Query: 88 YDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDR--YNGPVYDQRRSPDHGRH 145
Y RGGYG + Y R Y R Y GP D P G +
Sbjct: 324 YGGYSRGGYGGYSRGGYGGSRGGYDSPRGGYDSPRG-GYSRGGYGGPRNDY--GPPRGSY 380
Query: 146 RSPVPVYDRRRSPDYGRNR 164
YD R DYG R
Sbjct: 381 GGSRGGYDGPRG-DYGPPR 398
Score = 51 (23.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 27/79 (34%), Positives = 30/79 (37%)
Query: 88 YDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 147
YDSPR GGY DYG R +Y G YD R D+G
Sbjct: 347 YDSPR-GGYD---SPRGGYSRGGYGGPRNDYGPPRG-SYGGSRGG-YDGPRG-DYG---- 395
Query: 148 PVPVYDRRRSPDYGRNRSP 166
P D R+ D R RSP
Sbjct: 396 --PPRDAYRTRDAPRERSP 412
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 49/161 (30%), Positives = 65/161 (40%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 110 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 149
DY RS Y N P RRS H + S V
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDSQV 165
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 109 (43.4 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ P RERD+++ F+ YG + + ++ F FV+F+ +A A+ + +L
Sbjct: 6 VFIGRLSP-HARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKELCS 64
Query: 70 RVISVEYALKDDSE-----RDDRYDSPRRGGY 96
+++E+A R+ SPR GGY
Sbjct: 65 ERVTIEHARSRRGRGGGPGMGGRF-SPRFGGY 95
Score = 50 (22.7 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 167
R RS + R P + RSP+ G RS R NRSP+
Sbjct: 193 RSRSRSSSRSRSP--SRSRSPERGSKRSRSRSLSRTPEKKSTSNRSPS 238
Score = 48 (22.0 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 127 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
DR + RS R RSP R RSP+ G RS
Sbjct: 184 DRKRNRSRSRSRSRSSSRSRSP----SRSRSPERGSKRS 218
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 110 (43.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATK 57
M +QR T+ ++V N + ++ D++ F YG + V I N FAFV+FE +++A K
Sbjct: 1 MGDQRGTR-VYVGNLTD-KVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEK 58
Query: 58 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RRGGYGRH 99
A + + S+L+ + VE + R R P RRG +GRH
Sbjct: 59 ACDILNGSELLGSQLRVE--ISKGRPRQGRRGGPMDRGGRRGDFGRH 103
Score = 37 (18.1 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDH-GRHR 146
Y G S +Y R G + RS G HR
Sbjct: 167 YSSGSSASYGRTGGQSAGRFRSRSPVGNHR 196
>TAIR|locus:2025092 [details] [associations]
symbol:SR45a "serine/arginine rich-like protein 45a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0009644 "response to high light
intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
Uniprot:Q84TH4
Length = 382
Score = 130 (50.8 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 53/181 (29%), Positives = 72/181 (39%)
Query: 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNV--LHV------RIRRNFAFVQFETQEEA 55
+ P +L+V R ERD++ HF G V +H+ R R F F+ ++ +A
Sbjct: 71 ENPGNSLYVTGLSH-RVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 129
Query: 56 TKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR-----RGGYGRHXX------XXX 104
+ + S D S L RVI+VE A + R R +P R GRH
Sbjct: 130 NRCIRSLDHSVLQGRVITVEKARR----RRGRTPTPGKYLGLRTARGRHKSPSYSPRRSV 185
Query: 105 XXXXXXXXXXXXDYGRGRSPAYDRYN-----GPVYDQRRSPDHGRHRSPVPVYDRRRSPD 159
D GR SP+Y R P Y +RR R SP Y+RRR
Sbjct: 186 SCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRS 245
Query: 160 Y 160
Y
Sbjct: 246 Y 246
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 124 (48.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 50/179 (27%), Positives = 71/179 (39%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 110 XXXXXXX-DYG--RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
DY R SP R G R D+ R + + R +S R++S
Sbjct: 127 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKS 185
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 124 (48.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 50/179 (27%), Positives = 71/179 (39%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 110 XXXXXXX-DYG--RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
DY R SP R G R D+ R + + R +S R++S
Sbjct: 127 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKS 185
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 124 (48.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 50/179 (27%), Positives = 71/179 (39%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 110 XXXXXXX-DYG--RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
DY R SP R G R D+ R + + R +S R++S
Sbjct: 127 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKS 185
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 115 (45.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ + + +
Sbjct: 246 KILYVRNL-MIETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGT 304
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGGYG 97
+L + V A D E+ RY +GG G
Sbjct: 305 ELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGG 336
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRTPGP 395
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 79 KDDSERDDRYDSPRRG-GYGR 98
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 120 (47.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 50/167 (29%), Positives = 68/167 (40%)
Query: 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALES 61
TL+V F TR RD+ FE YG ++ I R FAFV++E + +A +A
Sbjct: 7 TLYVTGFSH-GTRARDLAYEFERYGRLVRCDIPAPRSASSRLFAFVEYEDRRDADEAYHD 65
Query: 62 TDRSKLV-DRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 120
+L D ++ +E+A S R++S R G GR
Sbjct: 66 MHNKRLGRDDILKIEWARTPPSA-SWRFESGRDRDRGSDRGDRSRRSPRR--------GR 116
Query: 121 GRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 167
SP R P D RR D R R YDR D R+RSP+
Sbjct: 117 SPSPPRRRDYSPRKDDRRDRDRDRDRD----YDRDSRRDRDRSRSPD 159
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 122 (48.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 53/180 (29%), Positives = 70/180 (38%)
Query: 6 PTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEAT 56
P +LFV N D IR+ D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNSSLFVRNIADDIRSE--DLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAE 65
Query: 57 KALESTDRSKLVDRVISVEYALKDDS--------ERDDRYDSPRRGG--YGRHXXXXXXX 106
AL + D+ + R I +++A D E Y S R Y R
Sbjct: 66 DALHNLDKKWICGRQIEIQFAQGDRKTPHQMKAKEGSSTYGSSRYDDDRYNRRSRSRSYE 125
Query: 107 XXXXXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
+YGR SP R + R DHGR R RS R+RS
Sbjct: 126 RRRSRSRSIEQNYGRSNSPRGGRGAERLRRSRSRSDHGRFNRRNR--SRSRSGSNSRSRS 183
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 121 (47.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 49/171 (28%), Positives = 70/171 (40%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D+ R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-NTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXD 117
AL + DR + R I +++A + D + + + GR+
Sbjct: 67 ALHNLDRKWICGRQIEIQFA-----QGDQKTPNQMKAKEGRNVYSSSRYDDYDR------ 115
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRS-PDYGRNRSPN 167
Y R RS +Y+R + RS D+ RS P R P R+ S N
Sbjct: 116 YRRSRSQSYERRRS----RSRSFDYNNRRSYSPRNSRPAGRPQRSRSHSDN 162
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRTRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 112 (44.5 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + +
Sbjct: 246 KILYVRNL-MIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGT 304
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGGYG 97
+L + V A D E+ RY +GG G
Sbjct: 305 ELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGG 336
Score = 37 (18.1 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRTPGP 395
>POMBASE|SPBC11C11.08 [details] [associations]
symbol:srp1 "SR family protein, human SRFS2 ortholog
Srp1" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC11C11.08 GO:GO:0005634 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0045292 EMBL:U66833 PIR:T48696 RefSeq:NP_596398.1
ProteinModelPortal:Q10193 STRING:Q10193 PRIDE:Q10193
EnsemblFungi:SPBC11C11.08.1 GeneID:2539818 KEGG:spo:SPBC11C11.08
eggNOG:NOG77895 OMA:DCYRYSK OrthoDB:EOG473T21 NextBio:20800967
Uniprot:Q10193
Length = 275
Score = 121 (47.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 60/182 (32%), Positives = 79/182 (43%)
Query: 3 NQRPTKTLFVINF-DPIRTRERDIKRHFEPYGNVLH-------VRIRRNFAFVQFETQEE 54
++R +TL+V F D +R RE + FEP+G ++ R R FAFV++E +
Sbjct: 2 SRRSLRTLYVTGFRDGMRARE--LAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRD 59
Query: 55 ATKALESTDRSKLVDR---VISVEYALKD--DSERDDRYDSPRRGG--YGRHXXXXXXXX 107
A A +L +R V+ VE+A + R RGG +G
Sbjct: 60 AEDAYYEVHGRRL-ERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSP 118
Query: 108 XXXXXXXXXDYGRGRSPAYDRYNGPVYDQR-RSPDHGRHRSPVPVYDRRRSPDYGRN-RS 165
Y RS R P Y R RSPD GR RSP YDRR SP RN RS
Sbjct: 119 SPHEARSRSPYNDERSDR--RSMSPRYRSRSRSPD-GRSRSPD--YDRR-SPK--RNHRS 170
Query: 166 PN 167
P+
Sbjct: 171 PS 172
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D +++E+A
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEHA 72
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEYALKDDSER-----DDRYDSPR 92
+++E+A R DR+ S R
Sbjct: 65 ERVTIEHARARSRGRGRGRYSDRFSSRR 92
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 46/154 (29%), Positives = 63/154 (40%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 110 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDH 142
DY RS + R + P RRS H
Sbjct: 127 RRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSH 159
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 99 (39.9 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKD 80
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
Score = 61 (26.5 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 139 SP-DHGRHRSPVPVYDRRRSPDYGRNR 164
SP DH R RSP R RS +GRNR
Sbjct: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNR 131
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 137 RRSPDH--GRHRSPVPVYDRRRS--PDYGRNRS 165
R++P + R P D RRS P R RS
Sbjct: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRS 122
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 120 (47.3 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 41/160 (25%), Positives = 64/160 (40%)
Query: 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 62
NQ P K L V N + + + +++ FE YG V I +NFAFV +EA A++
Sbjct: 74 NQGPVK-LHVANVE--KGTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGL 130
Query: 63 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG-RHXXXXXXXXXXXXXXXXXDYGRG 121
D ++ + I V+ + +D Y P G + R+ G
Sbjct: 131 DNTEFQGKRIHVQISKSRPRGEEDDYGHPDAGYWPPRYPGERPEPPGYPRGRYGYPPGPP 190
Query: 122 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 161
P Y R +P + R R V Y++ R+ YG
Sbjct: 191 PPPPPPPPRRSPYPDRAAPAYERQRDVVDYYEKYRARPYG 230
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 98 (39.6 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 57
P +LF+ N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKD 80
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
Score = 61 (26.5 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 139 SP-DHGRHRSPVPVYDRRRSPDYGRNR 164
SP DH R RSP R RS +GRNR
Sbjct: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNR 131
Score = 37 (18.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 137 RRSPDH--GRHRSPVPVYDRRRS--PDYGRNRS 165
R++P + R P D RRS P R RS
Sbjct: 90 RKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRS 122
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 113 (44.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 47/169 (27%), Positives = 65/169 (38%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 117
+ V+ Y DS R PRR GYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------R-RNFAFVQFETQEEATK 57
P L+V RT E ++ FE +GN++H+ + R + FAF+++ET+EEA K
Sbjct: 75 PKTKLYVSGLS-FRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMK 133
Query: 58 ALESTDRSKLVDRVISVEYAL--KDDSERDDRYDSPR 92
A++ L RVI VE A D S R D P+
Sbjct: 134 AIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPK 170
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+F+ +A A+ D +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 70 RVISVEYA 77
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 110 (43.8 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + +
Sbjct: 208 KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGT 266
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY RGG
Sbjct: 267 ELEGSCLEVTLAKPVDKEQYSRYQKAARGG 296
Score = 37 (18.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A +R GP
Sbjct: 342 GRGRGAAGNRAPGP 355
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 81 DSERDD-RYDSPRRGG 95
+RD Y S G
Sbjct: 74 RRDRDGYSYGSRMTNG 89
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 110 (43.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + +
Sbjct: 246 KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGT 304
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY RGG
Sbjct: 305 ELEGSCLEVTLAKPVDKEQYSRYQKAARGG 334
Score = 37 (18.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A +R GP
Sbjct: 380 GRGRGAAGNRAPGP 393
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 112 (44.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 37/152 (24%), Positives = 70/152 (46%)
Query: 18 IRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKLVDRVIS 73
+ T ++++ HF YG + +++ +AFV+++ + +A AL++ + + L++ IS
Sbjct: 10 VETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTTLLNSKIS 69
Query: 74 VEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 133
VE+A + +++ + + G+ + R R RY P
Sbjct: 70 VEWAKGGKNADNNKCFACGQEGHWIKSCPNGGKKRSRDRSLSRSHSRDRRSR--RYRSPS 127
Query: 134 YDQR-RSPDHGRHRSPVPVYDRRRSPDYGRNR 164
+D+R RS D R RS R RS D R+R
Sbjct: 128 WDRRDRSRDRSRDRS------RDRSRDRSRDR 153
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 110 (43.8 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 45/160 (28%), Positives = 70/160 (43%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSK 66
++V N DP R ER+++ F+ +G + +V + R +AF++F+ + +A A+ + DR
Sbjct: 4 VYVGNLDP-RVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKN 62
Query: 67 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAY 126
VE + KD R RRGG + RGR
Sbjct: 63 ----GWRVELSHKDKGGRGG--GGGRRGGI----EDSKCYECGELGHFARECRRGRGSV- 111
Query: 127 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R P +RRSPD+G R + RR SP R+ +P
Sbjct: 112 -RRRSPSPRRRRSPDYGYARRSISPRGRR-SPPRRRSVTP 149
>TAIR|locus:2089094 [details] [associations]
symbol:AT3G27700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AB018114 EMBL:AY062574 EMBL:BT000780
EMBL:AK229929 IPI:IPI00547344 RefSeq:NP_189407.2 RefSeq:NP_851008.1
UniGene:At.8026 ProteinModelPortal:Q9LVX1 SMR:Q9LVX1 PaxDb:Q9LVX1
PRIDE:Q9LVX1 EnsemblPlants:AT3G27700.1 EnsemblPlants:AT3G27700.2
GeneID:822392 KEGG:ath:AT3G27700 TAIR:At3g27700 eggNOG:NOG280405
HOGENOM:HOG000078746 InParanoid:Q9LVX1 KO:K13192 OMA:DQPLWNN
PhylomeDB:Q9LVX1 ProtClustDB:CLSN2690575 Genevestigator:Q9LVX1
Uniprot:Q9LVX1
Length = 908
Score = 117 (46.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 4 QRPTKTLFVINFDPIRTRERD-IKRHFEPYGNVL--HVRIRRNFAFVQFETQEEATKALE 60
Q+ +TLFV N+ P + RD I HF+ +G V+ H+ + AFVQF +EEA AL
Sbjct: 434 QKAMRTLFV-NYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALR 492
Query: 61 STDRSKLVDRVISVEYALKD 80
+ D + + +R I + +A +D
Sbjct: 493 APD-AVMGNRFIKLWWANRD 511
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRR---GGYGR 98
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR 117
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 112 (44.5 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 30/93 (32%), Positives = 49/93 (52%)
Query: 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSK 66
T+FV DP E +++ F PYG ++HV+I + FVQF T+ A +AL S + ++
Sbjct: 283 TIFVGGLDPT-VAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQ 341
Query: 67 LVDRVISVEYALKDDSERDDRYDSPRRGG--YG 97
L + I + + S++ D+ GG YG
Sbjct: 342 LGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYG 374
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 111 (44.1 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 52/176 (29%), Positives = 69/176 (39%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V R R FA V FE +E
Sbjct: 117 ANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENRE 175
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXXXXXXXXXXXXX 112
++ +A E + +L R I V+Y++ +P G Y GR
Sbjct: 176 DSKEAKERANGMELDGRRIRVDYSITKGPH------TPTPGIYMGRPTYGGGPSVSRRRD 229
Query: 113 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR--RSPDYGRNRSP 166
Y RG YD Y + R + R RSP P Y R RS R+ SP
Sbjct: 230 S----YDRGYERGYDSY------EDRDYHNNRRRSPSPYYSRGPYRSRSRSRSYSP 275
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 85 (35.0 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 65
++V N P RE++++ F YG + +V I+ FAFV+FE +A A+ + D
Sbjct: 11 VYVGNL-PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 66 KLVDRVISVEY 76
+ R I VE+
Sbjct: 70 EFDGRRIRVEF 80
Score = 70 (29.7 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 117 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 167
D R RSP +R P Y RRS R RS R RS +RSP+
Sbjct: 210 DRSRSRSPRAERRASPKYSPRRSRSRSRSRSR----SRSRSASRSPSRSPS 256
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 85 (35.0 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 65
++V N P RE++++ F YG + +V I+ FAFV+FE +A A+ + D
Sbjct: 11 VYVGNL-PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 66 KLVDRVISVEY 76
+ R I VE+
Sbjct: 70 EFDGRRIRVEF 80
Score = 70 (29.7 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 117 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 167
D R RSP +R P Y RRS R RS R RS +RSP+
Sbjct: 210 DRSRSRSPRAERRASPKYSPRRSRSRSRSRSR----SRSRSASRSPSRSPS 256
>CGD|CAL0003843 [details] [associations]
symbol:NPL3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:2000805 "negative regulation of
termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 7 TKTLFVINFDPIR---TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63
TK LFV P+R TRE +++ HF V+ VR+ +AFV FE +++A +ALE +
Sbjct: 8 TKQLFV---RPLRNDVTRE-EVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLN 63
Query: 64 RSKLVDRVISVEYALKDDSERDDRY 88
++ + +E+A + + +Y
Sbjct: 64 DAEFNGEKLQIEFAKERREDTRGKY 88
Score = 43 (20.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/67 (32%), Positives = 23/67 (34%)
Query: 93 RGGYGRHXXXXXXXXXXXXXXXXXDYG-RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 151
RGGY R G RG YDR G YD+ D G
Sbjct: 226 RGGYDRGGFRGGRGGFDRGGFRGGRGGFRGGRGGYDR-GG--YDRDNFNDRGGS------ 276
Query: 152 YDRRRSP 158
YDR RSP
Sbjct: 277 YDRERSP 283
>UNIPROTKB|Q59ZV3 [details] [associations]
symbol:NPL3 "Putative uncharacterized protein NPL3"
species:237561 "Candida albicans SC5314" [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 7 TKTLFVINFDPIR---TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63
TK LFV P+R TRE +++ HF V+ VR+ +AFV FE +++A +ALE +
Sbjct: 8 TKQLFV---RPLRNDVTRE-EVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLN 63
Query: 64 RSKLVDRVISVEYALKDDSERDDRY 88
++ + +E+A + + +Y
Sbjct: 64 DAEFNGEKLQIEFAKERREDTRGKY 88
Score = 43 (20.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/67 (32%), Positives = 23/67 (34%)
Query: 93 RGGYGRHXXXXXXXXXXXXXXXXXDYG-RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 151
RGGY R G RG YDR G YD+ D G
Sbjct: 226 RGGYDRGGFRGGRGGFDRGGFRGGRGGFRGGRGGYDR-GG--YDRDNFNDRGGS------ 276
Query: 152 YDRRRSP 158
YDR RSP
Sbjct: 277 YDRERSP 283
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 60
K +I + E D+K F YG VL V I R FAF+QF+ EA KAL+
Sbjct: 113 KARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALK 172
Query: 61 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 94
+ ++ R ++V++A+ D +D ++ S G
Sbjct: 173 GANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGG 206
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 60
K +I + E D+K F YG VL V I R FAF+QF+ EA KAL+
Sbjct: 113 KARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALK 172
Query: 61 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 94
+ ++ R ++V++A+ D +D ++ S G
Sbjct: 173 GANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGG 206
>SGD|S000001016 [details] [associations]
symbol:RIM4 "Putative RNA-binding protein required for
sporulation gene expression" species:4932 "Saccharomyces
cerevisiae" [GO:0030435 "sporulation resulting in formation of a
cellular spore" evidence=IEA;IGI;IMP] [GO:0003723 "RNA binding"
evidence=IEA;ISS;IMP] [GO:0006279 "premeiotic DNA replication"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007126
"meiosis" evidence=IEA;IEP;IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001016 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0030435 GO:GO:0003723
EMBL:U11582 GO:GO:0007131 GO:GO:0006279 eggNOG:NOG322326
OrthoDB:EOG41ZJKV EMBL:AY558114 PIR:S46838 RefSeq:NP_011839.1
ProteinModelPortal:P38741 SMR:P38741 DIP:DIP-5673N IntAct:P38741
MINT:MINT-497617 STRING:P38741 PaxDb:P38741 EnsemblFungi:YHL024W
GeneID:856361 KEGG:sce:YHL024W CYGD:YHL024w HOGENOM:HOG000142374
OMA:FIKYETE NextBio:981820 Genevestigator:P38741 GermOnline:YHL024W
Uniprot:P38741
Length = 713
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRN-FAFVQFETQEEATKALESTD 63
+++FV D TRE ++ R F +G + + + N FAF+++ET+E A ALES +
Sbjct: 346 RSIFVGQLDKETTRE-ELNRRFSTHGKIQDINLIFKPTNIFAFIKYETEEAAAAALESEN 404
Query: 64 RSKLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+ +++ + V+Y K+ R +R S + GG
Sbjct: 405 HAIFLNKTMHVQY--KEVGGRHNRKFSGKNGG 434
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 60
K +I + E D+K F YG VL V I R FAFVQF+ EA KAL+
Sbjct: 113 KARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALK 172
Query: 61 STDRSKLVDRVISVEYALKDDSERDDRYDS 90
+ ++ R ++V++A+ D +D ++ S
Sbjct: 173 GANMKEIKGRTVAVDWAVAKDKYKDAQHAS 202
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 54/173 (31%), Positives = 70/173 (40%)
Query: 9 TLFVINFDPIRTRERDIKRHFEPYGNV--------LHVRIRRNFAFVQFETQEEATKALE 60
TL V N RT ++R FE YG V H + R FAFV+F + +A A
Sbjct: 15 TLKVDNLT-YRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 61 STDRSKLVDRVISVE---YALKD--DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXX 115
+ D ++L R + V+ Y +D S + + R GGYGR
Sbjct: 74 AMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHR 133
Query: 116 XDYGRG----RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 164
RG RS + RY G Y RSP RSP RSP Y R+R
Sbjct: 134 SR-SRGPSCSRSRSRSRYRGSRYS--RSP---YSRSPYSRSRYSRSP-YSRSR 179
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 109 (43.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + +
Sbjct: 248 KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNGT 306
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY +GG
Sbjct: 307 ELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 336
Score = 36 (17.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A R GP
Sbjct: 383 GRGRGAAGSRAPGP 396
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 109 (43.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + +
Sbjct: 248 KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNGT 306
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY +GG
Sbjct: 307 ELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 336
Score = 36 (17.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A R GP
Sbjct: 383 GRGRGAAGSRAPGP 396
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 90 (36.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDR 64
++V N P+ +ERDI+ F YG + + ++ N FAFV+FE +A A+ +
Sbjct: 6 IYVGNL-PMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNG 64
Query: 65 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 97
D + VEY S ++ P GG G
Sbjct: 65 YGFGDCKLRVEYPRSSGS----KFSGPAGGGGG 93
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP 158
R RS + RY P Y R SP R+RSP P + R SP
Sbjct: 193 RSRSRSRGRYTPP-YQSRGSPPP-RYRSP-PRHMTRHSP 228
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 48/167 (28%), Positives = 66/167 (39%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAILDGR 83
Query: 71 VISVE---YALKDDSERDD----RYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRS 123
+ V+ Y DS R S GG RH R RS
Sbjct: 84 ELRVQMARYGRPPDSYYGGGGGGRRGSGGGGGSRRHGARRSRSPRRRRRSRSRSRSRSRS 143
Query: 124 PAYDRYN---GPVYDQRRSPDH--GRHRSPVPVYDRRRSPDYGRNRS 165
+ RY+ Y + RS H + +S P R RS R+RS
Sbjct: 144 RSRSRYSRSRSRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRS 190
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 90 (36.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---R--NFAFVQFETQEEATK 57
+ R ++T++V N P RER+++ F YG V+ + ++ R +AFV+F+ +A
Sbjct: 2 SSRSSRTVYVGNL-PGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 58 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 97
A+ D + VE A DD S GG G
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRG 100
Score = 62 (26.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 119 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
GR S + R G + RS R RSP RRSP +RSP
Sbjct: 207 GRSYSKSRSRSRGRSVSRSRSRSRSRSRSP-KAKSSRRSPAKSTSRSP 253
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 79 (32.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 24 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
+++R F YG + V + RN FAFV+FE +AT A+ D L + VE +
Sbjct: 29 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVEMS--- 85
Query: 81 DSERDDRYDSP 91
+ E+ R+ P
Sbjct: 86 NGEKRSRFRGP 96
Score = 67 (28.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 122 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 164
R P D G Y +R SP RHRSP + R RS R R
Sbjct: 102 RRPRDDYRRGDDYRRRSSPP-ARHRSPRRSFSRSRSRSLSRER 143
Score = 61 (26.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP--DYGRNRS 165
RG P++ R P D RR D+ R SP P R RSP + R+RS
Sbjct: 94 RGPPPSWSRR--PRDDYRRGDDYRRRSSP-PA--RHRSPRRSFSRSRS 136
>FB|FBgn0024542 [details] [associations]
symbol:Neos "Neosin" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR004154 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 SUPFAM:SSF52954
Gene3D:3.40.50.800 eggNOG:NOG147049 EMBL:AF160904 UniGene:Dm.869
ProteinModelPortal:Q7KLX0 PaxDb:Q7KLX0 PRIDE:Q7KLX0
FlyBase:FBgn0024542 InParanoid:Q7KLX0 OrthoDB:EOG49GHZP
ArrayExpress:Q7KLX0 Bgee:Q7KLX0 Uniprot:Q7KLX0
Length = 383
Score = 110 (43.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N P+ TRE ++ +PYG VL +++N+ FVQFET+E A KA + +S
Sbjct: 34 IFLGNL-PVCTRE-ELVSICQPYGKVLGSMVQKNYGFVQFETEELANKAASALHKSTFKQ 91
Query: 70 RVISVEYA 77
+++V A
Sbjct: 92 NMLTVRNA 99
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 110 (43.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + +
Sbjct: 246 KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGT 304
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY RGG
Sbjct: 305 ELEGSCLEVTLAKPVDKEQYSRYQKAARGG 334
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 89 (36.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---R--NFAFVQFETQEEATK 57
+ R ++T++V N P RER+++ F YG V+ + ++ R +AFV+FE +A
Sbjct: 2 SSRSSRTIYVGNL-PGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 58 ALESTDRSKLVDRVISVEYALKDD-SERDDR--YDSPRRGGYG 97
A+ D + VE A S D R Y RGG G
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRG 103
Score = 60 (26.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 120 RGRSPAYDRYNG--PVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
RGRS + R G P + RS + RSP RRSP +RSP
Sbjct: 204 RGRSYSKSRSRGRSPSRSRSRSRSRSKSRSP-KAKSLRRSPAKSTSRSP 251
>CGD|CAL0004460 [details] [associations]
symbol:orf19.4748 species:5476 "Candida albicans" [GO:0030620
"U2 snRNA binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0071004 "U2-type prespliceosome" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004460 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000001
GO:GO:0000398 GO:GO:0005686 GO:GO:0030620 PANTHER:PTHR10501
RefSeq:XP_723434.1 ProteinModelPortal:Q5AQ60 STRING:Q5AQ60
GeneID:3634924 KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 3 NQRPTKTLFVINFDPIRTRE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL 59
N +P++TL+V N + ++ ++ F +G+++ + ++ FAF+ F AT AL
Sbjct: 27 NLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINLQNGFAFIIFSNLNSATLAL 86
Query: 60 ESTDRSKLVDRVISVEYALKD 80
+ D+ + + YA+K+
Sbjct: 87 RNLKNQDFFDKPLVLNYAVKE 107
>UNIPROTKB|Q5AQ60 [details] [associations]
symbol:MSL1 "Putative uncharacterized protein MSL1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0030620 "U2 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 CGD:CAL0004460 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AACQ01000001 GO:GO:0000398 GO:GO:0005686
GO:GO:0030620 PANTHER:PTHR10501 RefSeq:XP_723434.1
ProteinModelPortal:Q5AQ60 STRING:Q5AQ60 GeneID:3634924
KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 3 NQRPTKTLFVINFDPIRTRE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL 59
N +P++TL+V N + ++ ++ F +G+++ + ++ FAF+ F AT AL
Sbjct: 27 NLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINLQNGFAFIIFSNLNSATLAL 86
Query: 60 ESTDRSKLVDRVISVEYALKD 80
+ D+ + + YA+K+
Sbjct: 87 RNLKNQDFFDKPLVLNYAVKE 107
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEA 55
+R + LFV T ++ +++ F P+G + R+ R+ F F+ F+++++A
Sbjct: 3 KRISAQLFVSRLSAYTT-DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 56 TKALESTDRSKLVD-RVISVEYALKDDSER 84
KAL+S D K+VD R+I VE A + R
Sbjct: 62 RKALKSLD-GKIVDGRLIFVEVAKNAEEVR 90
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 107 (42.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + +
Sbjct: 246 KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGT 304
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY +GG
Sbjct: 305 ELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 107 (42.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + +
Sbjct: 246 KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGT 304
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY +GG
Sbjct: 305 ELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 93 (37.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
RTR RD++R F YG V V ++R++AFV+F +A A D I+VE +
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
Query: 79 KDDSERDDRYDSPRRG---GYGR 98
+ R R D+ RG G GR
Sbjct: 81 --GAPRGSR-DNGSRGPPPGSGR 100
Score = 53 (23.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 120 RGRSPAYDR-YN-GPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRSP 166
R RSP+ R Y+ G Y + RSP R +S V DR RSP R+ SP
Sbjct: 163 RRRSPSRSRSYSRGRSYSRSRSPVR-REKS---VEDRSRSPKAMERSVSP 208
Score = 49 (22.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 125 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
+Y R PV + RSP R S Y R RS Y R+RSP
Sbjct: 150 SYSR--SPV--KSRSPRRRRSPSRSRSYSRGRS--YSRSRSP 185
Score = 48 (22.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 122 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP 158
RSP R P +RRSP R S Y R RSP
Sbjct: 153 RSPVKSR--SP--RRRRSPSRSRSYSRGRSYSRSRSP 185
>POMBASE|SPAC13G7.13c [details] [associations]
symbol:msa1 "RNA-binding protein Msa1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0031138 "negative
regulation of conjugation with cellular fusion" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC13G7.13c GO:GO:0005829 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0031138
EMBL:AB028018 PIR:T39025 RefSeq:NP_593715.2
ProteinModelPortal:Q10277 STRING:Q10277 EnsemblFungi:SPAC13G7.13c.1
GeneID:2542861 KEGG:spo:SPAC13G7.13c eggNOG:NOG322326
OrthoDB:EOG41ZJKV NextBio:20803902 Uniprot:Q10277
Length = 533
Score = 107 (42.7 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 5 RPTKTLFVINFDPIRTRER---DIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEAT 56
+P LFV + + R+ E +K +F+ +G +LHV++ +R ++FVQF+ ++A+
Sbjct: 76 KPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDAS 135
Query: 57 KALESTDRSKLVDRVISVEYA 77
KAL + L R I +E A
Sbjct: 136 KALSEAQNTILDGRHIRIERA 156
Score = 35 (17.4 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 120 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 151
+G SP ++ P RR G+ +S PV
Sbjct: 240 KGSSP----FSPPNAHSRRRKSQGKDQSNTPV 267
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 106 (42.4 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 43/159 (27%), Positives = 61/159 (38%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 71 VISVE---YALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYD 127
+ V+ Y DS R PR R Y R +S +
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRSPR--RRRRSRSRSRSRSRSRSRSRYSRSKSRSRT 141
Query: 128 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R + RS + +S R RS R+RSP
Sbjct: 142 RSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 180
>UNIPROTKB|F1NDD0 [details] [associations]
symbol:F1NDD0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AADN02019816 EMBL:AADN02019817 IPI:IPI00575003
ProteinModelPortal:F1NDD0 Ensembl:ENSGALT00000013174 Uniprot:F1NDD0
Length = 307
Score = 108 (43.1 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG V V+I + + F+ FETQE+A K L+
Sbjct: 41 IFVGGID-FKTNENDLRKFFAQYGCVREVKIVNDRAGISKGYGFITFETQEDAQKILQEA 99
Query: 63 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+ D+ +++ A++ R R + + GG
Sbjct: 100 KKLNYKDKKLNIGPAIRKQQTRMPRSNVIQEGG 132
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEAT 56
RP K LF+ + T E+ ++ F YG ++ V + R FAFV FE+ +A
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 57 KALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 96
A + L + I VE A K E + Y SPR GY
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFE--NVYLSPRDDGY 101
>UNIPROTKB|F1S0E2 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:CU469321 Ensembl:ENSSSCT00000004768 Uniprot:F1S0E2
Length = 240
Score = 84 (34.6 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVI 72
R D++R F YG ++ V I R FA+VQFE +A AL + +R + R I
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 60
Query: 73 SVEYALKD 80
+++A D
Sbjct: 61 EIQFAQGD 68
Score = 61 (26.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 139 SP-DHGRHRSPVPVYDRRRSPDYGRNR 164
SP DH R RSP R RS +GRNR
Sbjct: 84 SPSDHRRSRSPSQRRTRSRSSSWGRNR 110
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 77 (32.2 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTD 63
++V N DP R ER+++ F +G + V + R +AF+ FE +A A+ D
Sbjct: 4 VYVGNLDP-RVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVD 59
Score = 67 (28.6 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 119 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 167
GR RS + R + P Y R+SP +G RS P R RSP R RSP+
Sbjct: 119 GRRRSRSRSR-SPPRY--RKSPTYGGRRSYSP---RARSPPPPRRRSPS 161
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
Identities = 49/155 (31%), Positives = 62/155 (40%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALES 61
LFV P R E DI R FE YG+V H + R F FV T E+A A E
Sbjct: 69 LFVTGIHP-RLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVNMVTAEQADAAKEG 127
Query: 62 TDRSKLVDRVISVEYALKDD--SERDDRYDSP-------RRGGYG-RHXXXXXXXXXXXX 111
+ R +S+E A + + +Y P RRGG G R+
Sbjct: 128 LQGEVIEGRTLSIEKARRSRPRTPTPGKYFGPPKREFGGRRGGRGDRYDDRRGGYGGGNW 187
Query: 112 XXXXXDY-GRGRSPAY-DRYNGPVYDQRRSPDHGR 144
DY G GR +Y DR + Y R D+GR
Sbjct: 188 RRGGDDYRGYGRYDSYSDRRD---YGGRDYRDYGR 219
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 99 (39.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 66
T LF+ N D +T+ +++ FE YG V+ + +N+ FV ET+++ A+++ +
Sbjct: 6 TFKLFIGNLDE-KTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64
Query: 67 LVDRVISVEYA 77
L + I VE A
Sbjct: 65 LNEFAIKVEAA 75
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP 158
YG Y+ ++ +D+R G R P P RR +P
Sbjct: 313 YGSPTPHGYEDFSRDAFDERMISSRGM-RGPSPP-GRRYAP 351
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 70 RVISVEYALKDDSER 84
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 70 RVISVEYALKDDSER 84
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 70 RVISVEYALKDDSER 84
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|H3BPG5 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471112 EMBL:AC009065 UniGene:Hs.355643 UniGene:Hs.507343
UniGene:Hs.733012 HGNC:HGNC:10080 ChiTaRS:RNPS1 SMR:H3BPG5
Ensembl:ENST00000561718 Ensembl:ENST00000566397 Uniprot:H3BPG5
Length = 128
Score = 72 (30.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 36 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRR 93
+H + + +A+V+FE +EA KAL+ D ++ + I+ L R+ PRR
Sbjct: 20 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRR 78
Score = 62 (26.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 137 RRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
RRSP R RS P RRRSP R+RSP
Sbjct: 87 RRSPPRMRRRSRSP---RRRSPVRRRSRSP 113
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 106 (42.4 bits), Expect = 0.00015, P = 0.00015
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A K L+
Sbjct: 47 IFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 105
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 106 EKLNYKDKKLNIGPAIR 122
>UNIPROTKB|H3BR57 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000564760
Bgee:H3BR57 Uniprot:H3BR57
Length = 112
Score = 72 (30.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 36 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRR 93
+H + + +A+V+FE +EA KAL+ D ++ + I+ L R+ PRR
Sbjct: 20 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRR 78
Score = 55 (24.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 137 RRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
RRSP R RS P RRRSP R+RS
Sbjct: 87 RRSPPRMRRRSRSP---RRRSPVRRRSRS 112
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 106 (42.4 bits), Expect = 0.00018, P = 0.00018
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A K L+
Sbjct: 47 IFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 105
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 106 EKLNYKDKKLNIGPAIR 122
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 106 (42.4 bits), Expect = 0.00018, P = 0.00018
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A K L+
Sbjct: 47 IFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 105
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 106 EKLNYKDKKLNIGPAIR 122
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 98 (39.6 bits), Expect = 0.00018, P = 0.00018
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 66
TK L V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++
Sbjct: 78 TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Query: 67 LVDRVIS 73
R+I+
Sbjct: 136 FQGRIIA 142
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
Identities = 43/157 (27%), Positives = 64/157 (40%)
Query: 24 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
+++R F YG + V + RN FAFV++E +A A++ D L + VE L +
Sbjct: 29 ELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE--LSN 86
Query: 81 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSP-------AYDRYNGPV 133
R RY P R + + + + RS + R G
Sbjct: 87 GMSRKSRYGRPSRRQFDPNDRCYQCGETGHYAYDCYRFSKRRSRRSRSGSRSRSRSRGRR 146
Query: 134 YDQRRSPDHGRHRSPVPVYDRRRS----PDYGRNRSP 166
Y R + R+RSP Y +RRS P R+RSP
Sbjct: 147 YRSRSRSNERRYRSPS--YSKRRSRSGSPGRSRSRSP 181
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 105 (42.0 bits), Expect = 0.00020, P = 0.00020
Identities = 47/179 (26%), Positives = 68/179 (37%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V R R FA+ Q +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 109
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNLYSSSRYDDYDRYRRSRSRSYER 126
Query: 110 XXXXXXX-DYG--RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
DY R SP R G R D+ R + + R +S R++S
Sbjct: 127 RRSRSRSFDYSYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKS 185
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 109 (43.4 bits), Expect = 0.00022, P = 0.00022
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 60
K+ +I + E D+K+ F +G VL +I +R FAFV F+ EA KAL
Sbjct: 235 KSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALT 294
Query: 61 STDRSKLVDRVISVEYALKDD 81
+ + K+ DR ++V++A+ D
Sbjct: 295 AMNGKKIKDRQVAVDWAIAKD 315
>UNIPROTKB|J9NZF4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03008509
Ensembl:ENSCAFT00000047953 OMA:PRRFAYV Uniprot:J9NZF4
Length = 318
Score = 84 (34.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVI 72
R D++R F YG ++ V I R FA+VQFE +A AL + +R + R I
Sbjct: 79 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 138
Query: 73 SVEYALKD 80
+++A D
Sbjct: 139 EIQFAQGD 146
Score = 61 (26.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 139 SP-DHGRHRSPVPVYDRRRSPDYGRNR 164
SP DH R RSP R RS +GRNR
Sbjct: 162 SPSDHRRSRSPSQRRTRSRSSSWGRNR 188
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 105 (42.0 bits), Expect = 0.00023, P = 0.00023
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + F+ FETQE+A K L+
Sbjct: 35 IFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEA 93
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 94 EKLNYKDKKLNIGPAIR 110
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 105 (42.0 bits), Expect = 0.00023, P = 0.00023
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A K L+
Sbjct: 35 IFVGGID-FKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 93
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 94 EKLNYKDKKLNIGPAIR 110
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 105 (42.0 bits), Expect = 0.00025, P = 0.00025
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + F+ FETQE+A K L+
Sbjct: 47 IFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEA 105
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 106 EKLNYKDKKLNIGPAIR 122
>POMBASE|SPBC428.12c [details] [associations]
symbol:SPBC428.12c "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC428.12c GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q9UNP9 PIR:T40464 RefSeq:NP_595190.1 ProteinModelPortal:O94359
EnsemblFungi:SPBC428.12c.1 GeneID:2540852 KEGG:spo:SPBC428.12c
eggNOG:NOG331137 OrthoDB:EOG4TJ03G NextBio:20801968 Uniprot:O94359
Length = 116
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-------NFAFVQFETQEEAT 56
+R T+ V N P T E + F P+G ++ V + R ++AFV+F+ E+A
Sbjct: 2 ERRKATVHVGNLAPSVT-ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAK 60
Query: 57 KALESTDRSKLVDRVISVEYA 77
+A+E+ + S L DR I V A
Sbjct: 61 EAMENMNYSILCDRCIRVSPA 81
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 99 (39.9 bits), Expect = 0.00028, P = 0.00028
Identities = 52/166 (31%), Positives = 72/166 (43%)
Query: 10 LFV--INFDPIRTRERDIKRHFEPYG---NVLHVRIR-----RNFAFVQFETQEEATKAL 59
LFV +NF+ T E+ ++ HF +G V+ V+ R R F F+ F E A+ A+
Sbjct: 8 LFVGGLNFN---TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM 64
Query: 60 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYG 119
+ + L R I V++A K S R R GG+G H YG
Sbjct: 65 RAMNGESLDGRQIRVDHAGK--SAR-----GTRGGGFGAHGRGRSYSRGGGDQG----YG 113
Query: 120 RGRSPAYD-RYNGPVYDQRRSPDH-GRHRSPVPVYDRRRSPDYGRN 163
GR YD R G Y RS D+ GR++ YDR +Y N
Sbjct: 114 SGRY--YDSRPGGYGYGYGRSRDYNGRNQGG---YDRYSGGNYRDN 154
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 104 (41.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 31/90 (34%), Positives = 46/90 (51%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65
K L+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + +
Sbjct: 246 KILYVRNL-MIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNGV 304
Query: 66 KLVDRVISVEYALKDDSERDDRYDSPRRGG 95
+L + V A D E+ RY +GG
Sbjct: 305 ELEGSCLEVTLAKPVDKEQYTRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 119 GRGRSPAYDRYNGP 132
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 92 (37.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKA 58
T +L V+N RT D+ F YG V+ V I R+ FAFV+++ ++EA KA
Sbjct: 15 TYSLLVLNIT-FRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 59 LESTDRSKLVD-RVISVEYA 77
+E D ++VD R I+V++A
Sbjct: 74 VERLD-GRVVDGREITVQFA 92
Score = 48 (22.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 137 RRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
RRS R RSP P RRRSP R+RSP
Sbjct: 122 RRSRSPRRSRSP-P---RRRSPR--RSRSP 145
>SGD|S000006111 [details] [associations]
symbol:NAB3 "RNA-binding protein, subunit of Nrd1 complex
(Nrd1p-Nab3p-Sen1p)" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0035649 "Nrd1 complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0001068 "transcription regulatory region RNA binding"
evidence=IDA] [GO:0071041 "antisense RNA transcript catabolic
process" evidence=IMP] [GO:0042780 "tRNA 3'-end processing"
evidence=IMP] [GO:0034472 "snRNA 3'-end processing" evidence=IMP]
[GO:0031126 "snoRNA 3'-end processing" evidence=IMP] [GO:0031124
"mRNA 3'-end processing" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071034 "CUT
catabolic process" evidence=IMP] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent" evidence=IDA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR004154 SGD:S000006111 GO:GO:0005634
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006949
SUPFAM:SSF52954 GeneTree:ENSGT00690000102070 GO:GO:0031124
GO:GO:0031126 Gene3D:3.40.50.800 GO:GO:0071034 GO:GO:0071028
EMBL:U05314 EMBL:D37935 EMBL:Z73546 PIR:S48529 RefSeq:NP_015134.1
PDB:2KVI PDB:2L41 PDB:2XNQ PDB:2XNR PDBsum:2KVI PDBsum:2L41
PDBsum:2XNQ PDBsum:2XNR ProteinModelPortal:P38996 SMR:P38996
DIP:DIP-3980N IntAct:P38996 MINT:MINT-536351 STRING:P38996
PaxDb:P38996 PeptideAtlas:P38996 EnsemblFungi:YPL190C GeneID:855911
KEGG:sce:YPL190C CYGD:YPL190c eggNOG:NOG331923 HOGENOM:HOG000113718
KO:K15561 OMA:KNAFGFI OrthoDB:EOG4BGD51 EvolutionaryTrace:P38996
NextBio:980619 Genevestigator:P38996 GermOnline:YPL190C
GO:GO:0035649 GO:GO:0001068 GO:GO:0071041 GO:GO:0034472
GO:GO:0030847 GO:GO:0042780 Uniprot:P38996
Length = 802
Score = 102 (41.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 60
M N P LF+ N + D+ R F PYG+++ + I+ F F+QF+ + A+E
Sbjct: 323 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 382
Query: 61 STDRSKLVDRVISVEYALKDDSERDDRYD 89
+ + + +E + + + D D
Sbjct: 383 CESQEMNFGKKLILEVSSSNARPQFDHGD 411
Score = 43 (20.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 126 YDRYNGPVYDQRRSPDHGRHRSPVPVYDR 154
Y Y+ P Q++ +G + P P +D+
Sbjct: 594 YQGYSMPPPQQQQQQPYGNYGMPPPSHDQ 622
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 105 (42.0 bits), Expect = 0.00031, P = 0.00031
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A K L+
Sbjct: 35 IFVGGID-FKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 93
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 94 EKLNYKDKKLNIGPAIR 110
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 99 (39.9 bits), Expect = 0.00033, P = 0.00033
Identities = 42/145 (28%), Positives = 63/145 (43%)
Query: 10 LFV--INFDPIRTRERDIKRHFEPYGNVLHVRI------RRN--FAFVQFETQEEATKAL 59
LFV +NF+ T E+ ++ HF +G + V + RR+ F F+ F E A+ A+
Sbjct: 8 LFVGGLNFN---TYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAM 64
Query: 60 ESTDRSKLVDRVISVEYALKDD-SERDDRYDSPRRG-GYGR-HXXXXXXXXXXXXXXXXX 116
+T+ L R I V++A K R +++ G GR H
Sbjct: 65 RATNGESLDGRQIHVDHAGKSARGTRGGAFEAHGHGYSRGRGHQSYGSSRYDSLPGGYGY 124
Query: 117 DYGRGRSP-------AYDRYNGPVY 134
YG GRS +YDRY+G Y
Sbjct: 125 GYGYGRSRDYGSSQGSYDRYSGGNY 149
>UNIPROTKB|I3LRW8 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:FP565487
Ensembl:ENSSSCT00000025710 OMA:SAPPRRY Uniprot:I3LRW8
Length = 188
Score = 101 (40.6 bits), Expect = 0.00036, P = 0.00036
Identities = 44/159 (27%), Positives = 60/159 (37%)
Query: 29 FEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDRVISVE---YA 77
FE YG V V I R+ FAFV+ + +A A+++ D + L R + V+ Y
Sbjct: 1 FEKYGRVGDVYIPRDRYNKESRGFAFVRXHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 60
Query: 78 LKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXDYGRGRSPAYD 127
DS R PRR GGYGR Y R +S +
Sbjct: 61 RPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRT 120
Query: 128 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
R + RS + +S R RS R+RSP
Sbjct: 121 RSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 159
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 92 (37.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 25 IKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE- 83
IK F+P+G V+ I +N+AFV + + EA A+ + SK+ + I V + + S
Sbjct: 94 IKELFQPFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVDGQKIFVSLSRSNPSRN 153
Query: 84 -RDDRYDSPRRGGYGRH 99
R + Y P Y H
Sbjct: 154 GRGEDYYPPPPPHYPPH 170
Score = 90 (36.7 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 20 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77
T E +++ FE YG V I +N+ FV + +E A KA+ + + ++ I+VEYA
Sbjct: 13 TTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEVNGSRITVEYA 70
Score = 48 (22.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 20/43 (46%), Positives = 22/43 (51%)
Query: 123 SPAYDRYNGPVYDQRRSPDHGRHRSPVPV---YDRRRSPDYGR 162
SP + Y+ YD RR P R SP PV Y R RSP GR
Sbjct: 227 SPRF--YDRDPYD-RRLPPPQRPVSP-PVASRYYRERSPLGGR 265
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 97 (39.2 bits), Expect = 0.00044, P = 0.00044
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 3 NQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
N+ T T L V N P T ++++ FE YG V+ I +++AFV E E+A +A+
Sbjct: 72 NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130
Query: 62 TDRSKLVD 69
D ++ D
Sbjct: 131 LDNTEFQD 138
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 101 (40.6 bits), Expect = 0.00044, P = 0.00044
Identities = 50/169 (29%), Positives = 70/169 (41%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSK 66
++V N DP R R+I+ F +G + V + R FAF+ F+ + +A A+ D K
Sbjct: 4 VYVGNLDP-RVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLD-GK 61
Query: 67 LVDRV-ISVEYAL---KDDSERDDR--YDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 120
RV +S + +D S D Y+ G + R R
Sbjct: 62 NGWRVELSTKAGSGRGRDRSGGSDMKCYECGEPGHFARECRLRIGSGGLGSGRRRSR-SR 120
Query: 121 GRSPAY---DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 166
RSP Y R P Y RRSP +GR SP +RRS Y R+ P
Sbjct: 121 SRSPRYRGRSRSRSPRY--RRSPSYGR--SPRDRSPKRRS--YSRSPPP 163
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 95 (38.5 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 3 NQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
N+ T T L V N P T ++++ FE YG V+ I +++AFV E E+A +A+
Sbjct: 72 NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130
Query: 62 TDRSKLVDRVISVE 75
D ++ + + V+
Sbjct: 131 LDNTEFQGKRMHVQ 144
Score = 93 (37.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 70 RVISVEYALKDDSE 83
I+VE A K+ S+
Sbjct: 63 VNINVE-ASKNKSK 75
Score = 44 (20.5 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 14/48 (29%), Positives = 14/48 (29%)
Query: 86 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 133
D YD G YGR RSP R GPV
Sbjct: 270 DPYDRHLLPTSGAAAAAAAAAAAAVTAASSSYYGRDRSPLR-RATGPV 316
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 95 (38.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 3 NQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
N+ T T L V N P T ++++ FE YG V+ I +++AFV E E+A +A+
Sbjct: 72 NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130
Query: 62 TDRSKLVDRVISVE 75
D ++ + + V+
Sbjct: 131 LDNTEFQGKRMHVQ 144
Score = 93 (37.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 70 RVISVEYALKDDSE 83
I+VE A K+ S+
Sbjct: 63 VNINVE-ASKNKSK 75
Score = 44 (20.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 86 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 133
DR+ P G YGR RSP R PV
Sbjct: 273 DRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLR-RATAPV 319
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 102 (41.0 bits), Expect = 0.00049, P = 0.00049
Identities = 36/139 (25%), Positives = 56/139 (40%)
Query: 3 NQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
N+ T T L V N P T ++++ FE YG V+ I +++AFV E E+A +A+
Sbjct: 72 NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130
Query: 62 TDRSKLVDRVISVEYA---LKDDSERDDRYDSPRR----GGYGRHXXXXXXXXXXXXXXX 114
D ++ + + V+ + L+ D+ R G
Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRHLLPTSGAAATAAAAAAAAAAVTAAS 190
Query: 115 XXDYGRGRSPAYDRYNGPV 133
YGR RSP R PV
Sbjct: 191 TSYYGRDRSPLR-RATAPV 208
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 107 (42.7 bits), Expect = 0.00053, P = 0.00053
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATK 57
+P+ + + N P + ++I++ F YG + VRI R F FV+F T+EEA
Sbjct: 792 KPSSKIIIKNL-PFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKN 850
Query: 58 ALESTDRSKLVDRVISVEYALKD 80
A+E+ S R + ++YA +D
Sbjct: 851 AMEALGNSHFYGRHLVLQYAEQD 873
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 103 (41.3 bits), Expect = 0.00054, P = 0.00054
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A + L+
Sbjct: 47 IFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQRILQEA 105
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 106 EKLNYKDKKLNIGPAIR 122
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 103 (41.3 bits), Expect = 0.00055, P = 0.00055
Identities = 45/159 (28%), Positives = 67/159 (42%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 70
R +E ++++ F +G V HVRI R F F+ F T EEAT A+++ + + R
Sbjct: 111 RMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGR 170
Query: 71 VISVEYALKDDSERDDRYDSPRRG---GYGRHXXXXXXXXXXXXXXXXXDYGRGR-SPAY 126
V++V+ A + R SP G GY R + R R S Y
Sbjct: 171 VLNVQKAKRS------RPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNNYRDRDSNRY 224
Query: 127 DRYNGPVYDQRR-SP-DHGRHRSPVPVYDRRRSPDYGRN 163
P QR SP ++ + R V RR +GR+
Sbjct: 225 RNSYRPSRPQREHSPGNYRKERYNVDSRPRRERHFHGRS 263
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 103 (41.3 bits), Expect = 0.00075, P = 0.00075
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 21 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
RE+DI+R F YG ++ ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 81 DSERDDRYDSPRRGGYG 97
+RD Y GGYG
Sbjct: 74 RRDRDG-YG----GGYG 85
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 96 (38.9 bits), Expect = 0.00082, P = 0.00082
Identities = 42/146 (28%), Positives = 62/146 (42%)
Query: 10 LFV--INFDPIRTRERDIKRHFEPYG---NVLHVRIR-----RNFAFVQFETQEEATKAL 59
LFV +NF+ T E+ ++ HF +G V+ V+ R R F F+ F E A+ A+
Sbjct: 8 LFVGGLNFN---TDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAM 64
Query: 60 ESTDRSKLVDRVISVEYALKDD-SERDDRYDSPRRG--------GYG--RHXXXXXXXXX 108
+ + L R I V++A K R + + RG GYG R+
Sbjct: 65 RAMNGESLDGRQIRVDHAGKSARGTRGGAFGARGRGYSRGGGDQGYGNGRYDSRPGGYGY 124
Query: 109 XXXXXXXXDYGRGRSPAYDRYNGPVY 134
DYG +YDRY+G Y
Sbjct: 125 GYGYGRSRDYGSRSQGSYDRYSGGNY 150
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 93 (37.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 70 RVISVEYALKDDSE 83
I+VE A K+ S+
Sbjct: 63 VNINVE-ASKNKSK 75
Score = 44 (20.5 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 86 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 133
DR+ P G YGR RSP R PV
Sbjct: 264 DRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLR-RATAPV 310
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 89 (36.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LFV P TRE D+ F+ YG +L ++ F FV+ E +A + + +
Sbjct: 6 LFVGRIPPQATRE-DMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 70 RVISVEYALKDDSERDD-------RYDSPRRGGY 96
I VE A + R++ +Y PRR G+
Sbjct: 65 SRIVVEPARGERRRRENFRESAASKYPRPRRTGF 98
Score = 50 (22.7 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 117 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHR-SPVPVYDRRRSPDYGRNRSPNF 168
DY RG D Y D+RR G +R + Y R +Y RN ++
Sbjct: 198 DYRRGGDYRRDAYRPGRDDERRYAPRGEYRRNNRDEYRRGGRDEYRRNSRSDY 250
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 103 (41.3 bits), Expect = 0.00090, P = 0.00090
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 57
P++ LFV N T E ++ HF G ++ +R+ + FAF+ F+ +E AT
Sbjct: 213 PSRILFVGNLS-FDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEEGATT 271
Query: 58 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 99
AL+S L++R + +EY +D S+R + R +G H
Sbjct: 272 ALKSKLTKMLINRKLRMEYG-EDRSKRRPK----RANDFGDH 308
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 103 (41.3 bits), Expect = 0.00090, P = 0.00090
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 57
P++ LFV N T E ++ HF G ++ +R+ + FAF+ F+ +E AT
Sbjct: 213 PSRILFVGNLS-FDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEEGATT 271
Query: 58 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 99
AL+S L++R + +EY +D S+R + R +G H
Sbjct: 272 ALKSKLTKMLINRKLRMEYG-EDRSKRRPK----RANDFGDH 308
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 100 (40.3 bits), Expect = 0.00094, P = 0.00094
Identities = 45/151 (29%), Positives = 61/151 (40%)
Query: 24 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
+++R F YG + V I RN FAFV+FE +A L+S+ + + VE +
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAKPLLKSSKSRVICGSRVRVE--VST 83
Query: 81 DSERDDRYDSP-RRGGYGRHXXXXXXXXXXXXXXXXXDYGR-----GRSPAYDRYNGPVY 134
R RYD P R + + Y R RS + R G Y
Sbjct: 84 GMPRRSRYDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSRSRSRGRRY 143
Query: 135 DQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 165
+ RS GR RS Y R RS R+RS
Sbjct: 144 SRSRSRSRGR-RSRSASYRRSRSVSPRRSRS 173
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 100 (40.3 bits), Expect = 0.00094, P = 0.00094
Identities = 45/152 (29%), Positives = 61/152 (40%)
Query: 24 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
+++R F YG + V I RN FAFV+FE +A A+ D + + VE L
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE--LST 83
Query: 81 DSERDDRYDSP-RRGGYGRHXXXXXXXXXXXXXXXXXDYGR-----GRSPAYDRYNGPVY 134
R R+D P R + + Y R RS ++ R G Y
Sbjct: 84 GMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRY 143
Query: 135 DQRRSPDHGRH-RSPVPVYDRRRSPDYGRNRS 165
+ RS GR RS P R RS R+RS
Sbjct: 144 SRSRSRSRGRRSRSASP--RRSRSVSLRRSRS 173
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 98 (39.6 bits), Expect = 0.00095, P = 0.00095
Identities = 48/172 (27%), Positives = 67/172 (38%)
Query: 10 LFV--INFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKAL 59
LF+ ++FD T E+ ++ F YG + +V + RN F FV FE ++A AL
Sbjct: 7 LFIGGLSFD---TTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDAL 63
Query: 60 ESTDRSKLVDRVISVEYALKDDSERDDRYD---SPRRGGYGRHXXXXXXXXXXXXXXXXX 116
E + + R I V+ A K R S R GG GR
Sbjct: 64 EGMNGKSVDGRTIRVDEAGKGGGGGGGRSGGGGSYRGGGGGRGGGGGFFRGGRGRGGGGG 123
Query: 117 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNF 168
YG G DR G +S G Y+R R YG +RS ++
Sbjct: 124 GYGGGDRSYGDRSYGGGGGGYKSGGGGYSSGGGGGYNRDRGSGYG-DRSSSY 174
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 100 (40.3 bits), Expect = 0.00097, P = 0.00097
Identities = 45/152 (29%), Positives = 61/152 (40%)
Query: 24 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
+++R F YG + V I RN FAFV+FE +A A+ D + + VE L
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE--LST 83
Query: 81 DSERDDRYDSP-RRGGYGRHXXXXXXXXXXXXXXXXXDYGR-----GRSPAYDRYNGPVY 134
R R+D P R + + Y R RS ++ R G Y
Sbjct: 84 GMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRY 143
Query: 135 DQRRSPDHGRH-RSPVPVYDRRRSPDYGRNRS 165
+ RS GR RS P R RS R+RS
Sbjct: 144 SRSRSRSRGRRSRSASP--RRSRSVSLRRSRS 173
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 100 (40.3 bits), Expect = 0.00097, P = 0.00097
Identities = 45/152 (29%), Positives = 61/152 (40%)
Query: 24 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80
+++R F YG + V I RN FAFV+FE +A A+ D + + VE L
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE--LST 83
Query: 81 DSERDDRYDSP-RRGGYGRHXXXXXXXXXXXXXXXXXDYGR-----GRSPAYDRYNGPVY 134
R R+D P R + + Y R RS ++ R G Y
Sbjct: 84 GMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRY 143
Query: 135 DQRRSPDHGRH-RSPVPVYDRRRSPDYGRNRS 165
+ RS GR RS P R RS R+RS
Sbjct: 144 SRSRSRSRGRRSRSASP--RRSRSVSLRRSRS 173
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 182 153 0.00081 105 3 11 22 0.49 31
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 166
No. of states in DFA: 491 (52 KB)
Total size of DFA: 126 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.07u 0.09s 16.16t Elapsed: 00:00:01
Total cpu time: 16.08u 0.09s 16.17t Elapsed: 00:00:01
Start: Mon May 20 15:57:19 2013 End: Mon May 20 15:57:20 2013
WARNINGS ISSUED: 1