BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030175
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 216 bits (550), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 126/188 (67%), Positives = 142/188 (75%), Gaps = 19/188 (10%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
+N +PTKTLFVINFDPIRT+E DI++HFEPYG V +VRIRRNF+FVQFETQE+ATKALE+
Sbjct: 87 SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEA 146
Query: 62 TDRSKLVDRVISVEYALKDDSERDDRYD--SPRRGGYG----RHSP-YGRSPSPAYRRRP 114
T RSK++DRV+SVEYALKDD ERDDR SPRR R SP YGR PSP RRP
Sbjct: 147 TQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRP 206
Query: 115 SPDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 173
SPDYGR RSP YDRY GP Y++RRSPD+G RRS DYGR RSP + RYRS
Sbjct: 207 SPDYGRARSPEYDRYKGPAAYERRRSPDYG-----------RRSSDYGRQRSPGYDRYRS 255
Query: 174 RSPVRRSR 181
RSPV R R
Sbjct: 256 RSPVPRGR 263
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 67
+FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 4 VFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGY 62
Query: 68 VDRVISVEYA 77
R +SVE+A
Sbjct: 63 EKRRLSVEWA 72
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/183 (53%), Positives = 123/183 (67%), Gaps = 10/183 (5%)
Query: 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63
RP+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++
Sbjct: 93 MRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152
Query: 64 RSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRS 123
SKL+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG S
Sbjct: 153 NSKLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGAS 211
Query: 124 PAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRR 179
P +R SPD+GR RSP P RR SP+YGR+R N R R SP +
Sbjct: 212 PV-----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKY 266
Query: 180 SRT 182
SR+
Sbjct: 267 SRS 269
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR
Sbjct: 1 MKPVFCGNFE-YDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDR 57
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana
GN=RSP41 PE=1 SV=2
Length = 356
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 118/187 (63%), Gaps = 25/187 (13%)
Query: 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL
Sbjct: 96 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKL 155
Query: 68 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 127
+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 156 MDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAH 214
Query: 128 RYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNFG 169
+ +R SPD+GR RSP P R SPDY RNRSP G
Sbjct: 215 KR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKG 268
Query: 170 RYRSRSP 176
R SRSP
Sbjct: 269 RGESRSP 275
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 66
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 1 MKPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Query: 67 L--VDRVISVEYALKD 80
R + VE+ D
Sbjct: 60 YGRTGRRLRVEWTKND 75
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 4 QRPTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALES 61
+ K L+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ +
Sbjct: 242 MQTVKILYVRNLM-IETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNN 300
Query: 62 TDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 114
+ ++L + V A D E+ RY +GG G + PS Y P
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 4 QRPTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALES 61
+ K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ +
Sbjct: 242 MQTVKILYVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNN 300
Query: 62 TDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 114
+ ++L + V A D E+ RY +GG G + PS Y P
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSK 66
T+FV DP E +++ F PYG ++HV+I + FVQF T+ A +AL S + ++
Sbjct: 283 TIFVGGLDPT-VAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQ 341
Query: 67 LVDRVISVEYALKDDSERDDR 87
L + I + + S++ D+
Sbjct: 342 LGGQSIRLSWGRSPSSKQTDQ 362
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LFV F P+ +E ++ F P+G + V+I FAFV+FE E A KA+E +
Sbjct: 127 LFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFAN 185
Query: 70 RVISVEYA 77
+ + V Y+
Sbjct: 186 QPLEVVYS 193
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 1 MANQRPTKT--LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 58
M+ +P + L V N T + +++ FE YG V+ I +++AFV E E+A +A
Sbjct: 69 MSKGKPKTSTKLHVGNISSSCTNQ-ELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEA 127
Query: 59 LESTDRSKLVDRVISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRR 112
+ D + +++SV+ + ER Y + G + + P ++ S YR
Sbjct: 128 ISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQEGHWSKECPLDQNGS--YRE 185
Query: 113 RPSP--------DYGRGRSPAYDR-YNG-PVYDQRRSPDHGRHRS---PVPVYDR----R 155
PS D G R + R ++G P Y +P HG R VP Y R
Sbjct: 186 GPSSEGFGPVRFDSGGDRGRGFHRGFSGEPAYAGSFAPSHGFTRGAGYAVPGYGRGAGFE 245
Query: 156 RSPDYGRNRSPNFGRYRSRSPVRRSRT 182
+ YG G S +PV S
Sbjct: 246 SAMGYGMPAGYGVGADNSMAPVYGSEA 272
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+FV N P T E +I+ F YG + I +NF FV +++ EA +A+++ L
Sbjct: 4 IFVGNLSPNTTAE-EIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 70 RVISVE 75
++VE
Sbjct: 63 MAMNVE 68
>sp|Q10277|MSA1_SCHPO Multicopy suppressor of sporulation protein msa1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=msa1 PE=4 SV=1
Length = 533
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 5 RPTKTLFVINFDPIRTRER---DIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEAT 56
+P LFV + + R+ E +K +F+ +G +LHV++ +R ++FVQF+ ++A+
Sbjct: 76 KPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDAS 135
Query: 57 KALESTDRSKLVDRVISVEYA 77
KAL + L R I +E A
Sbjct: 136 KALSEAQNTILDGRHIRIERA 156
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTD 63
++FV DP+ + F YG V+ +I + FAF++F++Q+ A A+
Sbjct: 366 SIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKT 425
Query: 64 RSKLVDRVISVEY 76
RS + + VE+
Sbjct: 426 RSPHQKKPLRVEF 438
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALES 61
LFV R +E ++++ F +G V HVRI R F F+ F T EEAT A+++
Sbjct: 103 LFVSGI-ASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDN 161
Query: 62 TDRSKLVDRVISVEYA 77
+ + RV++V+ A
Sbjct: 162 LNSQEFYGRVLNVQKA 177
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKD 80
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 57
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKD 80
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQ 52
M RP K LFV + ++T E+ +K F YG+++ V + R FAFV FE+
Sbjct: 2 MEADRPEK-LFVGGLN-LKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESP 59
Query: 53 EEATKALESTDRSKLVDRVISVEYALK 79
+A A + L + I V +K
Sbjct: 60 ADAKAAARDMNGKYLDGKAIMVAQTIK 86
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQ 52
M RP K LF+ + ++T E+ +K F YG+++ V + R FAFV FE+
Sbjct: 2 MEADRPEK-LFIGGLN-LKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESP 59
Query: 53 EEATKALESTDRSKLVDRVISVEYALK 79
+A A + L + I V +K
Sbjct: 60 ADAKAAARDMNGKYLDGKAIMVAQTIK 86
>sp|Q9LVX1|C3H41_ARATH Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis
thaliana GN=At3g27700 PE=1 SV=1
Length = 908
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 4 QRPTKTLFVINFDPIRTRERD-IKRHFEPYGNVL--HVRIRRNFAFVQFETQEEATKALE 60
Q+ +TLFV N+ P + RD I HF+ +G V+ H+ + AFVQF +EEA AL
Sbjct: 434 QKAMRTLFV-NYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALR 492
Query: 61 STDRSKLVDRVISVEYALKD 80
+ D + + +R I + +A +D
Sbjct: 493 APD-AVMGNRFIKLWWANRD 511
>sp|Q8WP23|BOLL_MACFA Protein boule-like OS=Macaca fascicularis GN=BOLL PE=2 SV=2
Length = 283
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A K L+
Sbjct: 35 IFVGGID-FKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 93
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 94 EKLNYKDKKLNIGPAIR 110
>sp|Q8N9W6|BOLL_HUMAN Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2
Length = 283
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + FV FETQE+A K L+
Sbjct: 35 IFVGGID-FKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 93
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 94 EKLNYKDKKLNIGPAIR 110
>sp|P19600|HNRPC_XENLA Heterogeneous nuclear ribonucleoprotein C OS=Xenopus laevis
GN=hnrnpc PE=2 SV=1
Length = 282
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQF + A A+ D +
Sbjct: 19 VFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQFSNERTARTAVAGEDGRMIAG 78
Query: 70 RVISVEYA 77
+V+ + A
Sbjct: 79 QVLDINLA 86
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 3 NQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
N+ T T L V N P T ++++ FE YG V+ I +++AFV E E+A +A+
Sbjct: 72 NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130
Query: 62 TDRSKLVDRVISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRP 114
D ++ + + V+ + ++ Y + G + + P RS A + +
Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRSGRVADFTEQY 190
Query: 115 SPDYGRGRSPAYDRYNGPVY 134
+ YG R+P Y +Y
Sbjct: 191 NEQYGAVRTPYTMGYGDSLY 210
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 70 RVISVE 75
I+VE
Sbjct: 63 VNINVE 68
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATK 57
+P+ + + N P + ++I++ F YG + VRI R F FV+F T+EEA
Sbjct: 792 KPSSKIIIKNL-PFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKN 850
Query: 58 ALESTDRSKLVDRVISVEYALKD 80
A+E+ S R + ++YA +D
Sbjct: 851 AMEALGNSHFYGRHLVLQYAEQD 873
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 17 PIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALEST----DRSK 66
P ++ K HFE +G V +I R F F+ F T++ A AL D SK
Sbjct: 12 PKHLTDKRFKEHFEKFGTVTDAKIIKKDGKSRLFGFIGFSTEQSAKNALSLNGTFIDTSK 71
Query: 67 LVDRVISV 74
+V +V
Sbjct: 72 IVVETATV 79
>sp|Q924M5|BOLL_MOUSE Protein boule-like OS=Mus musculus GN=Boll PE=2 SV=2
Length = 281
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 62
+FV D +T E D+++ F YG+V V+I + + F+ FETQE+A K L+
Sbjct: 35 IFVGGID-FKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEA 93
Query: 63 DRSKLVDRVISVEYALK 79
++ D+ +++ A++
Sbjct: 94 EKLNYKDKKLNIGPAIR 110
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 57
P+ L V P +T ERD+K F +G + HV + + F FV FE +E+A +
Sbjct: 111 PSNVLGVFGLAP-QTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVR 169
Query: 58 ALESTDRSKLVDRVISVEYAL 78
A E +L + I +++
Sbjct: 170 AKEECQDLQLHGKSIRTDFSA 190
>sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NAB3 PE=1
SV=1
Length = 802
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 60
M N P LF+ N + D+ R F PYG+++ + I+ F F+QF+ + A+E
Sbjct: 323 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIE 382
Query: 61 STDRSKLVDRVISVEYA 77
+ + + +E +
Sbjct: 383 CESQEMNFGKKLILEVS 399
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 20 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>sp|Q8SRU2|SFR_ENCCU Probable splicing factor ECU05_1440 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU05_1440 PE=1 SV=1
Length = 301
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 17 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV-ISVE 75
P E IK +F +G V V ++ + F+ F+++ T+ L R+ +D ISVE
Sbjct: 9 PNHVSEEQIKEYFGQFGEVTDVSLKGTYGFLNFDSEGSITRVL--NQRTHSIDGAPISVE 66
Query: 76 YALK----DDSERDDRYDSPRRGGYG--------RHSPY------GRSPSPAYRRRPSPD 117
A D E DRY RGGY R++PY RSP Y R S
Sbjct: 67 RANGRKRPLDGEYHDRYMDMGRGGYSPHRDYRGFRNAPYPPMRYESRSPG-RYDPRFSDR 125
Query: 118 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD 159
YG GRSP Y + + D +RS D + + P++ R D
Sbjct: 126 YG-GRSPEYRGDSFRMGDPQRSRDFCEYCNACPIHGMRDMMD 166
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQE 53
A+ + L+V TR D+K F +G V+ ++ N + FV T +
Sbjct: 445 ASCSSGRNLWVSGLSS-STRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSD 503
Query: 54 EATKALESTDRSKLVDRVISVEYALKDDSER 84
EATK + R++L R+ISVE A + SE+
Sbjct: 504 EATKCISHLHRTELHGRMISVEKAKNEPSEK 534
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 79 KDDSERDDRYDSPRRGGYG 97
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
>sp|Q5R452|SAFB1_PONAB Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1
Length = 914
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 11 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALEST 62
F ++ TR D+K F YG V+ ++ N + FV T EEATK +
Sbjct: 408 FWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHL 467
Query: 63 DRSKLVDRVISVEYA 77
+++L ++ISVE A
Sbjct: 468 HKTELHGKMISVEKA 482
>sp|Q15424|SAFB1_HUMAN Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4
Length = 915
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 11 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALEST 62
F ++ TR D+K F YG V+ ++ N + FV T EEATK +
Sbjct: 408 FWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHL 467
Query: 63 DRSKLVDRVISVEYA 77
+++L ++ISVE A
Sbjct: 468 HKTELHGKMISVEKA 482
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 3 NQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
N+ T T L V N P T ++++ FE YG V+ I +++AFV E E+A +A+
Sbjct: 72 NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130
Query: 62 TDRSKLVDRVISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRP 114
D ++ + + V+ + ++ Y + G + + P RS A +
Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQY 190
Query: 115 SPDYGRGRSPAYDRYNGPVY 134
+ YG R+P Y +Y
Sbjct: 191 NEQYGAVRTPYTMSYGDSLY 210
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 70 RVISVE 75
I+VE
Sbjct: 63 VNINVE 68
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 3 NQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61
N+ T T L V N P T ++++ FE YG V+ I +++AFV E E+A +A+
Sbjct: 72 NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130
Query: 62 TDRSKLVDRVISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRP 114
D ++ + + V+ + ++ Y + G + + P RS A +
Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQY 190
Query: 115 SPDYGRGRSPAYDRYNGPVY 134
+ YG R+P Y +Y
Sbjct: 191 NEQYGAVRTPYTMSYGDSLY 210
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 70 RVISVE 75
I+VE
Sbjct: 63 VNINVE 68
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 57
P +LF+ N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 58 ALESTDRSKLVDRVISVEYALKD 80
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 64
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S +
Sbjct: 247 VKILYVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNG 305
Query: 65 SKLVDRVISVEYALKDDSERDDRY 88
++L + V A D E+ RY
Sbjct: 306 TELEGSCLEVTLAKPVDKEQYSRY 329
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 19 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 19 RTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRV 71
+ E D+K F YG VL V I R FAFVQF+ EA KAL+ + ++ R
Sbjct: 124 KCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRT 183
Query: 72 ISVEYALKDDSERDDRYDS 90
++V++A+ D +D ++ S
Sbjct: 184 VAVDWAVAKDKYKDAQHAS 202
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6
PE=2 SV=1
Length = 345
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 20 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64
+ + L V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D
Sbjct: 75 KASTKLHVGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 133
Query: 65 SKLVDRVISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPD 117
++ + + V+ + ++ Y + G + + P RS A + +
Sbjct: 134 TEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQ 193
Query: 118 YGRGRSPAYDRYNGPVY 134
YG R+P Y +Y
Sbjct: 194 YGAVRTPYTMSYGDSLY 210
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 70 RVISVE 75
I+VE
Sbjct: 63 VNINVE 68
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V I R FAFV FE +
Sbjct: 112 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 54 EATKALESTDRSKLVDRVISVEYAL 78
+A +A E + +L R I V++++
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSI 195
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V I R FAFV FE +
Sbjct: 112 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 54 EATKALESTDRSKLVDRVISVEYAL 78
+A +A E + +L R I V++++
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSI 195
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V I R FAFV FE +
Sbjct: 112 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 54 EATKALESTDRSKLVDRVISVEYAL 78
+A +A E + +L R I V++++
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSI 195
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 53
AN P L V + T ERD++ F YG + V I R FAFV FE +
Sbjct: 112 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 54 EATKALESTDRSKLVDRVISVEYAL 78
+A +A E + +L R I V++++
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSI 195
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEY 76
+++E+
Sbjct: 65 ERVTIEH 71
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEY 76
+++E+
Sbjct: 65 ERVTIEH 71
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 70 RVISVEY 76
+++E+
Sbjct: 65 ERVTIEH 71
>sp|O77768|HNRPC_RABIT Heterogeneous nuclear ribonucleoprotein C OS=Oryctolagus
cuniculus GN=HNRNPC PE=2 SV=1
Length = 306
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 70 RVISVEYA 77
+V+ + A
Sbjct: 78 QVLDINLA 85
>sp|Q9Z204|HNRPC_MOUSE Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Mus musculus
GN=Hnrnpc PE=1 SV=1
Length = 313
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 70 RVISVEYA 77
+V+ + A
Sbjct: 78 QVLDINLA 85
>sp|Q5RA82|HNRPC_PONAB Heterogeneous nuclear ribonucleoprotein C OS=Pongo abelii
GN=HNRNPC PE=2 SV=1
Length = 306
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 70 RVISVEYA 77
+V+ + A
Sbjct: 78 QVLDINLA 85
>sp|P07910|HNRPC_HUMAN Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Homo sapiens
GN=HNRNPC PE=1 SV=4
Length = 306
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 70 RVISVEYA 77
+V+ + A
Sbjct: 78 QVLDINLA 85
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 64
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 245 VKILYVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 303
Query: 65 SKLVDRVISVEYALKDDSERDDRY 88
++L + V A D E+ RY
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRY 327
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 7 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 64
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 245 VKILYVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 303
Query: 65 SKLVDRVISVEYALKDDSERDDRY 88
++L + V A D E+ RY
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRY 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,315,329
Number of Sequences: 539616
Number of extensions: 3599835
Number of successful extensions: 11593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 652
Number of HSP's that attempted gapping in prelim test: 9344
Number of HSP's gapped (non-prelim): 2037
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)