Query 030175
Match_columns 182
No_of_seqs 293 out of 2080
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 8.3E-23 2.8E-27 174.1 18.4 77 5-82 100-184 (437)
2 2dgu_A Heterogeneous nuclear r 99.9 2.6E-22 8.8E-27 138.6 12.3 81 3-84 7-87 (103)
3 2dnq_A RNA-binding protein 4B; 99.9 4.7E-22 1.6E-26 134.0 11.0 81 2-83 3-83 (90)
4 1x4c_A Splicing factor, argini 99.9 2.2E-21 7.5E-26 135.1 12.8 76 4-80 12-93 (108)
5 2kvi_A Nuclear polyadenylated 99.9 5.7E-22 1.9E-26 135.3 9.1 80 2-82 5-85 (96)
6 2dgt_A RNA-binding protein 30; 99.9 1.6E-21 5.3E-26 131.9 11.1 80 3-83 6-85 (92)
7 2fy1_A RNA-binding motif prote 99.9 2.7E-21 9.4E-26 136.5 12.3 81 1-82 1-88 (116)
8 4fxv_A ELAV-like protein 1; RN 99.9 8.9E-22 3.1E-26 135.4 9.4 73 6-79 18-98 (99)
9 2dnp_A RNA-binding protein 14; 99.9 1.5E-21 5.2E-26 131.4 10.2 79 3-82 5-83 (90)
10 2cpd_A Apobec-1 stimulating pr 99.9 4.3E-21 1.5E-25 131.4 11.7 78 4-82 12-91 (99)
11 3ex7_B RNA-binding protein 8A; 99.9 1.8E-21 6.3E-26 138.8 9.8 79 4-83 19-105 (126)
12 1x4a_A Splicing factor, argini 99.9 4.8E-21 1.7E-25 133.4 11.3 79 3-82 18-101 (109)
13 2cqi_A Nucleolysin TIAR; RNA r 99.9 6.7E-21 2.3E-25 131.3 11.6 81 2-83 10-96 (103)
14 2xnq_A Nuclear polyadenylated 99.9 5.2E-21 1.8E-25 130.9 10.4 77 3-80 18-95 (97)
15 2cq3_A RNA-binding protein 9; 99.8 1.4E-20 4.7E-25 129.7 12.6 80 3-83 11-96 (103)
16 1whw_A Hypothetical protein ri 99.8 1.2E-20 4.1E-25 129.0 11.9 81 2-83 3-91 (99)
17 2dnz_A Probable RNA-binding pr 99.8 1.2E-20 4.1E-25 128.0 11.8 78 4-82 2-87 (95)
18 3r27_A HnRNP L, heterogeneous 99.8 4.2E-21 1.4E-25 132.1 9.6 78 3-81 17-98 (100)
19 1wf1_A RNA-binding protein RAL 99.8 4.2E-21 1.4E-25 134.0 9.7 76 6-82 26-102 (110)
20 2d9p_A Polyadenylate-binding p 99.8 9E-21 3.1E-25 130.6 11.0 80 3-83 11-96 (103)
21 3s8s_A Histone-lysine N-methyl 99.8 5.3E-21 1.8E-25 134.0 9.9 77 3-80 2-86 (110)
22 1x5u_A Splicing factor 3B subu 99.8 1.1E-20 3.8E-25 130.5 11.4 80 3-83 11-98 (105)
23 2dgs_A DAZ-associated protein 99.8 1.6E-20 5.6E-25 128.4 12.1 80 2-83 5-92 (99)
24 2dgx_A KIAA0430 protein; RRM d 99.8 6E-21 2E-25 130.2 9.8 79 3-82 5-92 (96)
25 1x5s_A Cold-inducible RNA-bind 99.8 9.5E-21 3.3E-25 130.2 10.6 80 3-83 8-95 (102)
26 1x4d_A Matrin 3; structural ge 99.8 4.9E-21 1.7E-25 132.4 9.1 77 4-81 12-93 (102)
27 2cqh_A IGF-II mRNA-binding pro 99.8 4.9E-21 1.7E-25 129.6 8.9 80 2-82 3-85 (93)
28 3beg_B Splicing factor, argini 99.8 3.9E-21 1.3E-25 135.5 8.7 74 5-79 14-93 (115)
29 2dnm_A SRP46 splicing factor; 99.8 9.5E-21 3.2E-25 130.5 10.1 79 3-82 9-95 (103)
30 1sjq_A Polypyrimidine tract-bi 99.8 3.8E-21 1.3E-25 133.5 8.0 80 3-83 12-95 (105)
31 2cq1_A PTB-like protein L; RRM 99.8 2E-20 7E-25 129.1 11.6 81 3-84 11-95 (101)
32 2dgo_A Cytotoxic granule-assoc 99.8 2.9E-20 1E-24 130.5 12.6 81 3-84 11-99 (115)
33 4f25_A Polyadenylate-binding p 99.8 7.4E-21 2.5E-25 134.0 9.4 76 5-81 3-84 (115)
34 2jvo_A Nucleolar protein 3; nu 99.8 7.5E-21 2.6E-25 132.7 9.3 78 3-81 27-104 (108)
35 1wex_A Hypothetical protein (r 99.8 1.6E-20 5.4E-25 130.4 10.8 81 3-84 11-95 (104)
36 2cq0_A Eukaryotic translation 99.8 1.1E-20 3.8E-25 130.1 10.0 80 3-83 11-98 (103)
37 1x5t_A Splicing factor 3B subu 99.8 1E-20 3.6E-25 128.5 9.7 79 4-83 2-89 (96)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1E-20 3.4E-25 130.1 9.7 80 3-83 8-95 (102)
39 1why_A Hypothetical protein ri 99.8 1.3E-20 4.6E-25 128.5 10.2 78 3-81 13-94 (97)
40 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-20 6.9E-25 135.5 11.7 80 3-83 38-125 (139)
41 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.7E-20 5.7E-25 138.6 11.0 78 4-82 36-121 (156)
42 4a8x_A RNA-binding protein wit 99.8 2.8E-20 9.6E-25 124.2 10.6 75 6-81 3-86 (88)
43 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.1E-20 7.2E-25 124.1 9.9 75 3-78 3-85 (85)
44 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-20 5.9E-25 126.5 9.6 80 2-82 3-88 (92)
45 2do4_A Squamous cell carcinoma 99.8 2.9E-20 9.9E-25 127.4 10.6 79 3-82 13-98 (100)
46 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-20 1.2E-24 128.0 10.9 79 4-83 12-100 (105)
47 2ad9_A Polypyrimidine tract-bi 99.8 1.7E-20 5.7E-25 133.1 9.4 81 3-84 27-111 (119)
48 2cpz_A CUG triplet repeat RNA- 99.8 1.9E-20 6.4E-25 131.6 9.6 79 4-83 22-108 (115)
49 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-20 5.4E-25 125.3 8.7 76 4-80 3-86 (87)
50 2cpj_A Non-POU domain-containi 99.8 3.1E-20 1.1E-24 127.1 10.3 79 3-82 11-91 (99)
51 1x4h_A RNA-binding protein 28; 99.8 5E-20 1.7E-24 128.3 11.4 80 3-83 11-104 (111)
52 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-20 5.1E-25 125.8 8.3 73 5-78 5-79 (89)
53 2jvr_A Nucleolar protein 3; RN 99.8 9.6E-21 3.3E-25 132.9 7.7 77 3-80 24-105 (111)
54 2cpf_A RNA binding motif prote 99.8 4E-20 1.4E-24 126.2 10.4 78 4-82 2-90 (98)
55 2cqd_A RNA-binding region cont 99.8 1E-19 3.5E-24 127.9 12.8 78 3-82 13-98 (116)
56 2e5h_A Zinc finger CCHC-type a 99.8 3.6E-20 1.2E-24 125.4 10.0 75 3-78 12-94 (94)
57 2do0_A HnRNP M, heterogeneous 99.8 1.3E-19 4.5E-24 126.8 12.8 78 3-81 11-95 (114)
58 2dhg_A TRNA selenocysteine ass 99.8 3.1E-20 1.1E-24 128.0 9.4 80 3-83 5-93 (104)
59 2x1f_A MRNA 3'-END-processing 99.8 4E-20 1.4E-24 125.9 9.7 75 6-81 1-83 (96)
60 1x4g_A Nucleolysin TIAR; struc 99.8 4.4E-20 1.5E-24 128.5 10.1 80 3-83 21-102 (109)
61 2ytc_A PRE-mRNA-splicing facto 99.8 3.8E-20 1.3E-24 123.0 9.2 75 3-78 8-85 (85)
62 1wi8_A EIF-4B, eukaryotic tran 99.8 6.9E-20 2.3E-24 126.5 10.8 78 3-83 11-97 (104)
63 2dgp_A Bruno-like 4, RNA bindi 99.8 3.9E-20 1.3E-24 128.0 9.6 79 3-82 9-98 (106)
64 3md1_A Nuclear and cytoplasmic 99.8 4.2E-20 1.4E-24 122.2 9.3 74 7-81 1-82 (83)
65 1p27_B RNA-binding protein 8A; 99.8 3.8E-20 1.3E-24 128.0 9.1 76 5-81 21-104 (106)
66 2cpe_A RNA-binding protein EWS 99.8 5.4E-20 1.9E-24 128.7 9.9 80 3-83 11-106 (113)
67 1x4f_A Matrin 3; structural ge 99.8 2.6E-20 8.9E-25 130.8 8.2 79 3-82 21-104 (112)
68 2lxi_A RNA-binding protein 10; 99.8 1.2E-20 4.1E-25 127.7 6.2 76 7-83 1-86 (91)
69 2cqc_A Arginine/serine-rich sp 99.8 2.9E-20 9.8E-25 126.0 8.1 76 3-79 11-94 (95)
70 1nu4_A U1A RNA binding domain; 99.8 5.6E-20 1.9E-24 125.1 9.5 79 2-81 3-90 (97)
71 3ulh_A THO complex subunit 4; 99.8 5.5E-20 1.9E-24 127.4 9.5 75 3-78 25-106 (107)
72 2cph_A RNA binding motif prote 99.8 1.3E-19 4.3E-24 125.5 11.2 80 3-83 11-100 (107)
73 2div_A TRNA selenocysteine ass 99.8 3.8E-20 1.3E-24 126.5 8.5 79 2-81 4-95 (99)
74 1oo0_B CG8781-PA, drosophila Y 99.8 5.9E-20 2E-24 127.9 9.5 77 5-82 24-108 (110)
75 2err_A Ataxin-2-binding protei 99.8 4.6E-20 1.6E-24 128.7 8.9 77 3-80 25-107 (109)
76 2e5j_A Methenyltetrahydrofolat 99.8 4.8E-20 1.6E-24 125.8 8.8 76 4-81 16-95 (97)
77 2fc9_A NCL protein; structure 99.8 9.4E-20 3.2E-24 125.0 10.2 78 3-81 11-92 (101)
78 2dng_A Eukaryotic translation 99.8 1.3E-19 4.5E-24 124.8 10.8 77 3-82 11-95 (103)
79 2la6_A RNA-binding protein FUS 99.8 8.1E-20 2.8E-24 125.0 9.3 75 3-78 9-99 (99)
80 2a3j_A U1 small nuclear ribonu 99.8 7.6E-20 2.6E-24 131.2 9.5 78 3-81 25-111 (127)
81 2kxn_B Transformer-2 protein h 99.8 3.9E-20 1.3E-24 133.0 8.0 78 3-81 42-127 (129)
82 2la4_A Nuclear and cytoplasmic 99.8 3.7E-20 1.3E-24 127.1 7.3 75 4-79 24-100 (101)
83 2cpx_A Hypothetical protein FL 99.8 9.1E-20 3.1E-24 127.8 9.4 79 4-83 22-108 (115)
84 2cpi_A CCR4-NOT transcription 99.8 7.6E-20 2.6E-24 127.9 8.8 77 4-81 12-102 (111)
85 2jrs_A RNA-binding protein 39; 99.8 9.9E-20 3.4E-24 126.9 9.2 78 3-81 22-107 (108)
86 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.2E-20 3.1E-24 136.0 9.6 78 5-83 70-155 (165)
87 2ywk_A Putative RNA-binding pr 99.8 5.8E-20 2E-24 124.5 7.7 76 3-79 12-94 (95)
88 1x5p_A Negative elongation fac 99.8 3.6E-19 1.2E-23 121.4 11.6 76 4-82 12-89 (97)
89 2fc8_A NCL protein; structure 99.8 1.6E-19 5.5E-24 124.0 9.8 79 3-82 11-94 (102)
90 2dh8_A DAZ-associated protein 99.8 5.6E-20 1.9E-24 127.0 7.6 80 2-83 11-98 (105)
91 2khc_A Testis-specific RNP-typ 99.8 9.7E-20 3.3E-24 128.3 8.6 75 3-78 36-118 (118)
92 2hvz_A Splicing factor, argini 99.8 7.8E-20 2.7E-24 125.4 7.8 73 8-81 1-76 (101)
93 1whx_A Hypothetical protein ri 99.8 1.2E-19 4E-24 127.2 8.8 74 6-80 9-84 (111)
94 3ns6_A Eukaryotic translation 99.8 4.6E-20 1.6E-24 126.8 6.5 76 4-80 3-93 (100)
95 2lkz_A RNA-binding protein 5; 99.8 8.8E-20 3E-24 124.6 7.7 76 3-79 5-94 (95)
96 2cqp_A RNA-binding protein 12; 99.8 7.9E-20 2.7E-24 124.7 6.8 77 3-80 11-95 (98)
97 3lqv_A PRE-mRNA branch site pr 99.8 2.7E-19 9.3E-24 125.5 9.5 78 3-81 4-86 (115)
98 3p5t_L Cleavage and polyadenyl 99.8 3.1E-20 1.1E-24 125.1 4.5 74 8-82 2-85 (90)
99 2cq2_A Hypothetical protein LO 99.8 2.5E-19 8.5E-24 126.0 8.8 78 3-81 21-107 (114)
100 1fjc_A Nucleolin RBD2, protein 99.8 1.8E-19 6.2E-24 122.4 7.9 78 3-81 12-92 (96)
101 2dgw_A Probable RNA-binding pr 99.8 6.5E-19 2.2E-23 118.6 10.2 76 3-81 6-88 (91)
102 2diu_A KIAA0430 protein; struc 99.8 3.1E-19 1.1E-23 120.6 8.5 78 2-82 3-86 (96)
103 2ek1_A RNA-binding protein 12; 99.8 6.9E-20 2.4E-24 124.2 5.3 75 4-79 12-94 (95)
104 1p1t_A Cleavage stimulation fa 99.8 8E-20 2.7E-24 125.9 5.6 76 5-81 6-89 (104)
105 2kt5_A RNA and export factor-b 99.8 7.2E-19 2.5E-23 125.0 10.6 79 3-82 31-116 (124)
106 2dis_A Unnamed protein product 99.8 8.9E-19 3E-23 121.6 10.7 78 4-82 5-94 (109)
107 3s7r_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 117.7 9.5 73 3-77 7-87 (87)
108 3zzy_A Polypyrimidine tract-bi 99.8 3.9E-19 1.3E-23 127.7 9.1 75 6-81 27-107 (130)
109 2rs2_A Musashi-1, RNA-binding 99.8 6.8E-19 2.3E-23 122.8 10.1 78 3-82 21-106 (109)
110 1s79_A Lupus LA protein; RRM, 99.8 2.2E-19 7.7E-24 124.2 7.5 74 4-79 8-88 (103)
111 1x4b_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 123.9 9.9 74 7-82 27-108 (116)
112 2nlw_A Eukaryotic translation 99.8 3.5E-19 1.2E-23 123.3 8.4 74 6-80 14-100 (105)
113 3ucg_A Polyadenylate-binding p 99.8 4.3E-19 1.5E-23 118.7 8.5 73 6-80 5-85 (89)
114 2lea_A Serine/arginine-rich sp 99.8 1.9E-19 6.4E-24 130.4 7.0 78 4-82 44-129 (135)
115 1wez_A HnRNP H', FTP-3, hetero 99.8 8.1E-19 2.8E-23 121.1 9.9 76 3-81 11-93 (102)
116 1wg5_A Heterogeneous nuclear r 99.8 1.7E-18 5.7E-23 119.7 11.4 77 3-81 11-95 (104)
117 2e5g_A U6 snRNA-specific termi 99.8 1.2E-18 4E-23 118.2 10.5 77 3-81 4-83 (94)
118 2e5i_A Heterogeneous nuclear r 99.8 8.2E-19 2.8E-23 125.3 10.1 75 6-81 22-103 (124)
119 2cqg_A TDP-43, TAR DNA-binding 99.8 1.3E-18 4.3E-23 119.7 10.7 77 3-82 11-95 (103)
120 1sjr_A Polypyrimidine tract-bi 99.8 4.5E-19 1.5E-23 132.0 9.0 75 6-81 45-125 (164)
121 2kn4_A Immunoglobulin G-bindin 99.8 1E-18 3.4E-23 129.0 10.6 77 5-82 68-152 (158)
122 3n9u_C Cleavage and polyadenyl 99.8 5.3E-19 1.8E-23 131.1 8.9 74 6-80 54-137 (156)
123 2i2y_A Fusion protein consists 99.8 5.7E-19 2E-23 129.5 8.7 77 4-81 70-149 (150)
124 1x4e_A RNA binding motif, sing 99.8 1.2E-19 3.9E-24 120.7 4.5 73 4-77 2-82 (85)
125 2cq4_A RNA binding motif prote 99.8 4.4E-19 1.5E-23 124.3 7.5 73 7-81 25-105 (114)
126 1x5o_A RNA binding motif, sing 99.8 1.4E-18 4.8E-23 121.6 10.0 76 4-80 22-112 (114)
127 2jwn_A Embryonic polyadenylate 99.8 1.1E-18 3.6E-23 124.0 9.4 73 7-81 36-116 (124)
128 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.1E-18 3.9E-23 125.9 9.7 74 3-77 59-140 (140)
129 1wg1_A KIAA1579 protein, homol 99.8 7E-19 2.4E-23 117.9 7.8 74 5-80 3-78 (88)
130 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.3E-19 1.5E-23 121.8 6.8 74 4-80 16-98 (100)
131 2m2b_A RNA-binding protein 10; 99.8 3.6E-19 1.2E-23 128.0 6.6 76 4-81 20-109 (131)
132 1fj7_A Nucleolin RBD1, protein 99.8 1.3E-19 4.6E-24 124.2 4.0 77 4-82 14-97 (101)
133 2krb_A Eukaryotic translation 99.8 6.4E-19 2.2E-23 116.3 6.7 67 7-74 1-80 (81)
134 2cpy_A RNA-binding protein 12; 99.8 1.1E-18 3.8E-23 122.5 8.0 76 4-81 12-95 (114)
135 1wel_A RNA-binding protein 12; 99.8 3.4E-19 1.2E-23 126.9 5.4 75 4-80 22-104 (124)
136 2db1_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 123.6 7.7 75 4-80 14-98 (118)
137 2e44_A Insulin-like growth fac 99.8 1.6E-18 5.3E-23 117.8 8.3 75 5-80 13-92 (96)
138 2f3j_A RNA and export factor b 99.8 1.4E-18 4.6E-23 131.4 8.8 76 4-80 85-167 (177)
139 2mss_A Protein (musashi1); RNA 99.8 6.1E-19 2.1E-23 114.5 5.9 67 9-77 1-75 (75)
140 2bz2_A Negative elongation fac 99.8 1.9E-18 6.3E-23 122.9 8.9 76 3-81 35-112 (121)
141 3q2s_C Cleavage and polyadenyl 99.8 9.1E-19 3.1E-23 137.4 7.7 74 6-80 67-150 (229)
142 3egn_A RNA-binding protein 40; 99.8 9.2E-19 3.2E-23 127.4 7.2 79 3-82 41-132 (143)
143 2lcw_A RNA-binding protein FUS 99.6 4.4E-20 1.5E-24 129.9 0.0 79 3-82 3-97 (116)
144 3tyt_A Heterogeneous nuclear r 99.8 3.9E-18 1.3E-22 131.6 9.9 76 5-81 2-81 (205)
145 2ki2_A SS-DNA binding protein 99.8 3.8E-19 1.3E-23 119.4 3.7 72 8-81 2-81 (90)
146 2hgl_A HNRPF protein, heteroge 99.7 1.7E-18 6E-23 125.5 7.3 75 4-80 41-125 (136)
147 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-18 3.8E-23 113.7 5.4 68 8-77 1-76 (77)
148 2hgn_A Heterogeneous nuclear r 99.7 9E-19 3.1E-23 127.5 4.9 76 4-82 43-125 (139)
149 1wf0_A TDP-43, TAR DNA-binding 99.7 3.9E-18 1.3E-22 114.1 7.6 76 4-82 2-80 (88)
150 3d2w_A TAR DNA-binding protein 99.7 8E-18 2.7E-22 113.3 9.1 74 3-81 7-85 (89)
151 2hzc_A Splicing factor U2AF 65 99.7 4.4E-18 1.5E-22 113.3 7.6 71 4-76 3-86 (87)
152 2dnn_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 119.6 6.9 70 7-79 16-92 (109)
153 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-18 6E-23 120.2 5.3 76 3-80 7-92 (107)
154 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5E-22 128.6 9.4 76 4-80 12-95 (213)
155 4f02_A Polyadenylate-binding p 99.7 2E-17 6.8E-22 127.8 9.2 74 6-80 102-181 (213)
156 1iqt_A AUF1, heterogeneous nuc 99.7 3.8E-18 1.3E-22 110.6 4.1 67 9-77 1-75 (75)
157 1b7f_A Protein (SXL-lethal pro 99.7 3.7E-17 1.3E-21 120.6 10.0 75 6-81 2-84 (168)
158 3md3_A Nuclear and cytoplasmic 99.7 3.9E-17 1.3E-21 120.0 9.5 74 4-78 84-165 (166)
159 3u1l_A PRE-mRNA-splicing facto 99.7 1.7E-17 5.9E-22 130.7 7.7 77 4-81 131-230 (240)
160 2qfj_A FBP-interacting repress 99.7 6.3E-17 2.2E-21 124.1 10.4 77 5-82 123-207 (216)
161 2hgm_A HNRPF protein, heteroge 99.7 2.5E-17 8.6E-22 117.9 7.6 75 3-80 38-121 (126)
162 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.6E-22 118.8 5.9 74 5-80 21-105 (123)
163 1fxl_A Paraneoplastic encephal 99.7 5.9E-17 2E-21 119.1 9.5 75 6-81 1-83 (167)
164 2xs2_A Deleted in azoospermia- 99.7 1.2E-17 4.1E-22 114.6 4.9 75 5-82 7-88 (102)
165 2dit_A HIV TAT specific factor 99.7 2.1E-16 7.2E-21 110.5 11.3 78 3-81 11-103 (112)
166 3pgw_A U1-A; protein-RNA compl 99.7 9.4E-17 3.2E-21 128.4 10.5 74 4-78 204-281 (282)
167 3pgw_A U1-A; protein-RNA compl 99.7 1.2E-16 4.1E-21 127.8 10.9 78 3-81 5-91 (282)
168 2yh0_A Splicing factor U2AF 65 99.7 8.2E-17 2.8E-21 121.9 9.0 77 5-82 112-196 (198)
169 1l3k_A Heterogeneous nuclear r 99.7 9.6E-17 3.3E-21 121.3 9.3 77 5-83 102-186 (196)
170 2adc_A Polypyrimidine tract-bi 99.7 6.4E-17 2.2E-21 126.3 8.4 76 4-80 31-110 (229)
171 2dnl_A Cytoplasmic polyadenyla 99.7 8.9E-17 3E-21 112.7 7.4 71 3-77 4-85 (114)
172 3md3_A Nuclear and cytoplasmic 99.7 1.3E-16 4.5E-21 117.1 8.7 73 8-81 1-80 (166)
173 2g4b_A Splicing factor U2AF 65 99.7 1.2E-16 4.2E-21 118.3 8.2 72 5-77 92-171 (172)
174 1fje_B Nucleolin RBD12, protei 99.7 1.7E-16 5.7E-21 118.2 8.2 75 5-80 97-174 (175)
175 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 119.6 8.7 77 3-81 9-93 (196)
176 2cjk_A Nuclear polyadenylated 99.7 1.1E-16 3.7E-21 118.1 7.1 73 6-80 86-166 (167)
177 2adc_A Polypyrimidine tract-bi 99.7 3.1E-16 1E-20 122.4 9.7 75 5-80 149-228 (229)
178 1qm9_A Polypyrimidine tract-bi 99.7 2E-16 6.8E-21 120.2 8.0 75 5-80 118-197 (198)
179 1b7f_A Protein (SXL-lethal pro 99.7 4.3E-16 1.5E-20 114.8 9.6 73 4-77 86-168 (168)
180 2pe8_A Splicing factor 45; RRM 99.7 4.1E-16 1.4E-20 108.1 8.9 76 4-79 5-93 (105)
181 3nmr_A Cugbp ELAV-like family 99.7 3.1E-16 1.1E-20 116.2 8.5 73 5-78 93-175 (175)
182 1qm9_A Polypyrimidine tract-bi 99.6 1.9E-16 6.6E-21 120.3 7.0 75 6-81 2-80 (198)
183 2qfj_A FBP-interacting repress 99.6 4E-16 1.4E-20 119.6 8.8 74 6-80 27-108 (216)
184 1fxl_A Paraneoplastic encephal 99.6 7.3E-16 2.5E-20 113.2 8.5 72 5-77 86-167 (167)
185 3sde_A Paraspeckle component 1 99.6 5E-16 1.7E-20 123.5 8.1 74 5-79 20-95 (261)
186 2voo_A Lupus LA protein; RNA-b 99.6 9.8E-16 3.4E-20 117.1 8.7 71 7-79 109-186 (193)
187 3tht_A Alkylated DNA repair pr 99.6 1.2E-15 4E-20 126.0 8.7 75 3-78 14-97 (345)
188 3nmr_A Cugbp ELAV-like family 99.6 1.9E-15 6.3E-20 112.0 8.7 75 6-81 2-89 (175)
189 2g4b_A Splicing factor U2AF 65 99.6 1.4E-15 4.8E-20 112.6 8.0 74 5-80 2-88 (172)
190 3tyt_A Heterogeneous nuclear r 99.6 9.1E-16 3.1E-20 118.3 7.0 72 5-77 121-204 (205)
191 2yh0_A Splicing factor U2AF 65 99.6 1.8E-15 6.2E-20 114.4 8.4 74 6-81 3-89 (198)
192 1fje_B Nucleolin RBD12, protei 99.6 3.2E-16 1.1E-20 116.6 3.6 77 3-81 9-92 (175)
193 2ghp_A U4/U6 snRNA-associated 99.6 2.5E-15 8.5E-20 120.7 9.0 75 4-80 207-291 (292)
194 3smz_A Protein raver-1, ribonu 99.6 3.2E-15 1.1E-19 119.6 9.2 78 4-82 181-266 (284)
195 2cjk_A Nuclear polyadenylated 99.6 2.1E-15 7.3E-20 111.1 7.0 71 6-79 2-80 (167)
196 2d9o_A DNAJ (HSP40) homolog, s 99.6 2E-14 6.8E-19 98.7 11.4 76 6-83 9-93 (100)
197 3smz_A Protein raver-1, ribonu 99.6 6.3E-15 2.2E-19 117.8 9.8 71 6-78 21-93 (284)
198 2j8a_A Histone-lysine N-methyl 99.6 3.2E-15 1.1E-19 106.6 6.5 70 8-78 3-94 (136)
199 3v4m_A Splicing factor U2AF 65 99.6 1E-14 3.5E-19 101.0 8.1 75 5-79 3-96 (105)
200 2ghp_A U4/U6 snRNA-associated 99.6 7.8E-15 2.7E-19 117.7 8.4 73 4-78 38-116 (292)
201 3s6e_A RNA-binding protein 39; 99.5 2.9E-14 9.8E-19 100.2 9.2 76 3-78 3-91 (114)
202 3ue2_A Poly(U)-binding-splicin 99.5 4.3E-14 1.5E-18 99.9 8.8 75 5-79 18-108 (118)
203 1jmt_A Splicing factor U2AF 35 99.5 3.9E-15 1.3E-19 102.9 2.9 65 12-77 20-103 (104)
204 3sde_A Paraspeckle component 1 99.5 3.1E-14 1.1E-18 113.1 7.1 75 6-81 95-180 (261)
205 1owx_A Lupus LA protein, SS-B, 99.5 2.6E-13 8.7E-18 96.0 10.6 76 2-78 13-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 8.1E-13 2.8E-17 88.4 8.6 77 4-82 4-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 2.2E-11 7.5E-16 81.8 4.9 72 4-77 12-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 1.4E-09 4.7E-14 84.1 7.0 58 21-78 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 2E-08 6.9E-13 68.9 7.3 70 6-76 20-96 (117)
210 1wey_A Calcipressin 1; structu 98.4 3E-07 1E-11 62.7 4.3 74 6-80 4-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.4 7.6E-06 2.6E-10 55.5 11.1 76 3-80 4-84 (104)
212 1wwh_A Nucleoporin 35, nucleop 98.1 1.1E-05 3.6E-10 56.4 7.1 70 5-77 22-94 (119)
213 1whv_A Poly(A)-specific ribonu 98.0 2.3E-05 7.7E-10 52.7 7.6 55 7-63 16-70 (100)
214 1uw4_A UPF3X; nonsense mediate 97.8 0.00015 5.2E-09 48.3 8.1 71 8-79 2-87 (91)
215 3ctr_A Poly(A)-specific ribonu 97.8 3E-05 1E-09 52.2 4.7 54 8-63 7-60 (101)
216 3p3d_A Nucleoporin 53; structu 97.6 0.00012 4.1E-09 51.8 5.5 71 5-78 5-97 (132)
217 2l08_A Regulator of nonsense t 97.2 0.0011 3.7E-08 44.5 6.2 71 7-78 9-94 (97)
218 3pq1_A Poly(A) RNA polymerase; 96.7 0.00063 2.2E-08 58.0 2.4 53 7-61 53-108 (464)
219 2i2y_A Fusion protein consists 96.3 0.0007 2.4E-08 48.5 0.3 38 41-79 12-50 (150)
220 2g0c_A ATP-dependent RNA helic 96.0 0.011 3.9E-07 37.3 5.0 69 9-78 2-75 (76)
221 2kn4_A Immunoglobulin G-bindin 95.5 0.006 2.1E-07 43.7 2.1 26 41-66 12-37 (158)
222 3d45_A Poly(A)-specific ribonu 95.3 0.046 1.6E-06 47.1 7.5 56 7-64 440-495 (507)
223 4eyt_A Telomerase associated p 92.6 1.2 4E-05 29.3 8.3 59 4-63 9-67 (129)
224 3pgw_S U1-70K; protein-RNA com 84.5 5.8 0.0002 33.2 9.2 9 52-60 116-124 (437)
225 3ts2_A Protein LIN-28 homolog 80.0 0.38 1.3E-05 34.4 0.2 29 22-50 1-29 (148)
226 4e8u_A Putative uncharacterize 76.0 4.6 0.00016 29.6 5.0 43 9-52 14-72 (172)
227 3lpe_A Putative transcription 74.6 8.8 0.0003 24.8 5.7 32 34-65 39-73 (92)
228 3fry_A Probable copper-exporti 72.6 7.3 0.00025 23.1 4.7 53 7-61 6-60 (73)
229 1opz_A Potential copper-transp 63.4 19 0.00063 20.6 6.5 59 2-61 2-66 (76)
230 2e5p_A Protein PHF1, PHD finge 62.7 4.2 0.00014 24.9 1.9 19 33-51 28-46 (68)
231 3dxs_X Copper-transporting ATP 61.5 22 0.00074 20.7 5.5 53 8-61 4-62 (74)
232 2m0o_A PHD finger protein 1; t 57.9 5.5 0.00019 25.0 1.9 20 33-52 45-64 (79)
233 4a4j_A Pacszia, cation-transpo 54.4 14 0.00049 21.2 3.5 53 8-61 4-61 (69)
234 2eqj_A Metal-response element- 52.1 8 0.00027 23.6 1.9 19 33-51 32-50 (66)
235 2cu1_A Mitogen-activated prote 51.4 50 0.0017 21.8 6.1 63 17-80 25-88 (103)
236 2e5q_A PHD finger protein 19; 49.3 3.6 0.00012 24.8 0.0 20 33-52 26-45 (63)
237 1yg0_A COP associated protein; 48.0 33 0.0011 18.8 5.4 52 9-61 4-60 (66)
238 3swz_A Steroid 17-alpha-hydrox 47.8 32 0.0011 28.1 5.7 59 8-69 15-77 (494)
239 3h7h_B Transcription elongatio 46.6 44 0.0015 22.1 5.2 33 34-66 40-75 (106)
240 2g9o_A Copper-transporting ATP 45.5 41 0.0014 20.6 4.8 54 8-62 5-64 (90)
241 2xmw_A PACS-N, cation-transpor 43.5 42 0.0014 18.7 5.6 53 8-61 5-62 (71)
242 3tbg_A Cytochrome P450 2D6; mo 43.0 14 0.00047 30.1 2.6 54 11-67 20-76 (479)
243 2l3m_A Copper-ION-binding prot 42.1 45 0.0015 18.6 5.5 53 8-61 7-65 (71)
244 4hcz_A PHD finger protein 1; p 42.0 15 0.0005 21.8 1.9 20 33-52 22-41 (58)
245 1y3j_A Copper-transporting ATP 41.5 50 0.0017 19.0 4.6 53 9-62 6-64 (77)
246 1q8l_A Copper-transporting ATP 41.5 55 0.0019 19.4 7.2 54 8-62 11-70 (84)
247 2bkf_A Zinc-finger protein NBR 41.1 31 0.0011 22.2 3.5 62 10-77 20-85 (87)
248 1cpz_A Protein (COPZ); copper 40.9 45 0.0015 18.3 7.1 52 9-61 3-60 (68)
249 1p6t_A Potential copper-transp 39.5 81 0.0028 20.9 6.0 51 10-61 78-134 (151)
250 2lea_A Serine/arginine-rich sp 39.4 6.2 0.00021 27.0 0.0 27 43-69 5-31 (135)
251 3fut_A Dimethyladenosine trans 38.9 25 0.00086 27.2 3.5 29 7-37 110-138 (271)
252 3uzu_A Ribosomal RNA small sub 38.3 13 0.00044 29.0 1.6 32 7-39 114-145 (279)
253 1aw0_A Menkes copper-transport 38.2 42 0.0014 18.8 3.7 53 9-62 6-64 (72)
254 1osd_A MERP, hypothetical prot 38.1 53 0.0018 18.3 6.5 53 9-62 6-64 (72)
255 2ofg_X Zinc-transporting ATPas 37.7 79 0.0027 20.2 7.1 53 9-62 11-69 (111)
256 3cjk_B Copper-transporting ATP 37.5 57 0.0019 18.5 5.9 53 9-62 5-63 (75)
257 1kvi_A Copper-transporting ATP 37.1 60 0.0021 18.7 6.2 54 8-62 10-69 (79)
258 2kt2_A Mercuric reductase; nme 36.2 56 0.0019 18.1 6.0 52 9-61 3-59 (69)
259 2yh5_A DAPX protein, BAMC; lip 36.2 52 0.0018 22.5 4.3 48 6-54 12-60 (127)
260 2exu_A Transcription initiatio 35.7 50 0.0017 24.6 4.5 31 35-65 139-172 (200)
261 2npt_B Mitogen-activated prote 35.6 54 0.0019 21.4 4.0 49 17-65 37-86 (100)
262 1wj6_A KIAA0049 protein, RSGI 35.5 16 0.00056 24.1 1.6 57 18-78 34-94 (101)
263 2gu3_A YPMB protein; APC1927, 35.0 23 0.00077 24.6 2.4 28 12-40 68-98 (136)
264 2kcm_A Cold shock domain famil 34.1 9.3 0.00032 23.7 0.2 47 33-79 3-54 (74)
265 1vq3_A Phosphoribosylformylgly 33.6 76 0.0026 20.5 4.6 60 9-69 19-83 (94)
266 1yjr_A Copper-transporting ATP 32.9 67 0.0023 18.0 6.5 44 7-51 5-50 (75)
267 1fvq_A Copper-transporting ATP 32.7 66 0.0023 17.8 4.6 53 9-62 5-62 (72)
268 2lsl_A Telomerase associated p 38.9 9.3 0.00032 25.2 0.0 23 41-63 76-98 (137)
269 2jrh_A Mitogen-activated prote 32.2 64 0.0022 20.8 3.9 62 17-79 21-83 (94)
270 2od0_A Hypothetical protein VP 32.1 31 0.001 22.5 2.6 21 20-40 4-24 (105)
271 3e6i_A CYPIIE1, P450-J, cytoch 31.9 42 0.0014 27.1 3.9 53 7-61 16-71 (476)
272 1qyr_A KSGA, high level kasuga 31.7 35 0.0012 26.0 3.2 28 8-36 91-118 (252)
273 2k5n_A Putative cold-shock pro 31.2 26 0.00088 21.6 1.9 47 32-79 4-53 (74)
274 2ew9_A Copper-transporting ATP 30.7 73 0.0025 21.0 4.5 52 9-61 83-140 (149)
275 2okq_A Hypothetical protein YB 30.5 95 0.0032 21.7 4.9 37 24-60 49-108 (141)
276 1mwy_A ZNTA; open-faced beta-s 30.3 77 0.0026 17.9 6.9 52 9-61 6-61 (73)
277 2kyz_A Heavy metal binding pro 30.3 44 0.0015 18.7 2.8 51 9-61 4-56 (67)
278 2e7g_A Putative ribosome-bindi 29.8 80 0.0027 21.5 4.5 32 32-63 43-79 (129)
279 2c60_A Human mitogen-activated 29.5 62 0.0021 21.4 3.6 49 17-65 48-97 (111)
280 3aqq_A Calcium-regulated heat 28.5 28 0.00095 24.7 1.9 20 32-51 64-83 (147)
281 2crl_A Copper chaperone for su 28.5 1.1E+02 0.0038 19.1 5.3 51 9-61 22-75 (98)
282 1wvf_A 4-cresol dehydrogenase 28.4 29 0.001 29.4 2.4 36 24-59 217-261 (520)
283 2f06_A Conserved hypothetical 28.4 1.4E+02 0.0046 20.1 5.7 44 23-67 87-135 (144)
284 2qif_A Copper chaperone COPZ; 28.1 76 0.0026 17.1 5.8 52 9-61 5-62 (69)
285 1ytr_A Bacteriocin plantaricin 28.1 31 0.0011 16.3 1.4 12 22-33 14-25 (26)
286 3p8b_B Transcription antitermi 27.5 56 0.0019 22.7 3.4 31 35-65 33-66 (152)
287 2lfv_A Protein DAMX; cell divi 33.1 13 0.00045 24.7 0.0 45 21-66 35-88 (106)
288 3k9v_A 1,25-dihydroxyvitamin D 26.5 99 0.0034 24.8 5.3 39 22-61 51-89 (482)
289 1i4w_A Mitochondrial replicati 26.5 39 0.0013 27.4 2.7 22 9-31 144-165 (353)
290 3n9y_A Cholesterol SIDE-chain 26.4 95 0.0032 25.1 5.2 38 23-61 36-73 (487)
291 1c9o_A CSPB, cold-shock protei 26.0 36 0.0012 20.2 1.9 19 33-51 4-22 (66)
292 2xk0_A Polycomb protein PCL; t 25.8 40 0.0014 20.6 2.0 18 33-52 34-51 (69)
293 1g6p_A Cold shock protein TMCS 25.8 30 0.001 20.7 1.5 19 33-51 3-21 (66)
294 3ced_A Methionine import ATP-b 25.7 80 0.0027 20.2 3.7 46 19-64 31-87 (98)
295 3ftd_A Dimethyladenosine trans 25.6 34 0.0012 25.9 2.1 27 8-35 96-122 (249)
296 2f40_A Hypothetical protein PF 25.5 9.7 0.00033 24.6 -0.8 64 10-75 13-79 (96)
297 3cam_A Cold-shock domain famil 25.3 38 0.0013 20.3 1.9 19 33-51 4-22 (67)
298 3ulj_A LIN28B, DNA-binding pro 24.3 32 0.0011 22.1 1.5 18 32-49 10-27 (90)
299 1h95_A CSD, Y-box binding prot 24.3 33 0.0011 21.4 1.5 19 33-51 11-29 (79)
300 3a0j_A Cold shock protein; OB- 24.0 36 0.0012 20.8 1.6 19 33-51 4-22 (73)
301 3tqs_A Ribosomal RNA small sub 24.0 27 0.00093 26.7 1.3 30 8-38 97-126 (255)
302 4bby_A Alkyldihydroxyacetoneph 23.9 77 0.0026 27.7 4.3 45 18-62 353-408 (658)
303 2ldi_A Zinc-transporting ATPas 23.6 98 0.0033 16.8 6.2 52 9-61 6-63 (71)
304 2rop_A Copper-transporting ATP 23.4 2E+02 0.0068 20.3 6.6 54 8-62 124-183 (202)
305 3d53_A Inorganic pyrophosphata 23.3 58 0.002 23.6 2.8 38 22-62 132-169 (173)
306 3pyf_A 4-diphosphocytidyl-2-C- 23.2 1.6E+02 0.0056 22.8 5.8 51 23-74 238-290 (306)
307 1jww_A Potential copper-transp 23.2 1.1E+02 0.0038 17.3 4.3 52 9-61 6-63 (80)
308 1ik9_C DNA ligase IV; DNA END 22.9 50 0.0017 17.4 1.9 16 18-33 20-35 (37)
309 3j21_T 50S ribosomal protein L 22.8 86 0.0029 19.9 3.3 43 19-61 33-82 (86)
310 2nzc_A Hypothetical protein; s 21.7 59 0.002 20.8 2.3 54 23-77 22-82 (86)
311 3i2z_B RNA chaperone, negative 21.5 50 0.0017 20.0 1.9 22 31-52 6-27 (71)
312 3bsu_A Ribonuclease H1, RNAse 21.3 1.2E+02 0.0042 17.1 4.6 33 20-61 18-50 (53)
313 3pm9_A Putative oxidoreductase 21.2 1.2E+02 0.004 25.4 4.8 40 23-62 201-251 (476)
314 3ld6_A Lanosterol 14-alpha dem 21.1 1.2E+02 0.0042 24.3 4.8 38 22-60 34-71 (461)
315 3kiz_A Phosphoribosylformylgly 21.1 18 0.00061 30.0 -0.3 42 23-64 316-361 (394)
316 3fle_A SE_1780 protein; struct 21.1 2.6E+02 0.009 20.8 6.8 37 4-40 4-43 (249)
317 2w9y_A CE-FAR-7, fatty acid/re 20.6 34 0.0011 24.0 1.1 35 11-61 23-57 (140)
318 2uuu_A Alkyldihydroxyacetoneph 20.4 54 0.0018 28.4 2.5 40 24-63 289-339 (584)
319 2kkh_A Putative heavy metal tr 20.1 1.6E+02 0.0053 17.8 7.5 53 9-62 19-77 (95)
320 3l3e_A DNA topoisomerase 2-bin 20.0 1E+02 0.0035 19.7 3.4 42 6-49 17-58 (107)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=8.3e-23 Score=174.08 Aligned_cols=77 Identities=27% Similarity=0.487 Sum_probs=71.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+.++|||+|| |+.||+++|+++|.+||.|+.|.|+ +|||||+|.+.++|++||+.|||++|+|..|.|+|
T Consensus 100 ~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999 8999999999999999999999883 78999999999999999999999999999999999
Q ss_pred eecCCC
Q 030175 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987554
No 2
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.89 E-value=2.6e-22 Score=138.59 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=75.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 82 (182)
...+.++|||+|| |+.+++++|+++|++||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|++++++..
T Consensus 7 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 7 GMAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4567899999999 889999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CC
Q 030175 83 ER 84 (182)
Q Consensus 83 ~~ 84 (182)
..
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 3
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.7e-22 Score=133.96 Aligned_cols=81 Identities=30% Similarity=0.473 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
....+.++|||+|| |..+++++|+++|++||+|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|++++++.
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 3 SGSSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCSSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 45678899999999 89999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 030175 82 SE 83 (182)
Q Consensus 82 ~~ 83 (182)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 4
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.2e-21 Score=135.14 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeC-CEEEEEeCCHHHHHHHHHhcCCCccCC-----cEEEEEEe
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVD-----RVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~l~V~~a 77 (182)
....++|||+|| |+.+++++|+++|.+||+|+.|.|.. +||||+|.+.++|++||+.||+++|.| +.|.|++|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 345789999999 89999999999999999999999976 999999999999999999999999999 99999999
Q ss_pred ecC
Q 030175 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
+++
T Consensus 91 ~~~ 93 (108)
T 1x4c_A 91 GPR 93 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
No 5
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.7e-22 Score=135.25 Aligned_cols=80 Identities=25% Similarity=0.568 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEccCCCC-CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 2 ANQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
.+.++.++|||+|| |+ .+++++|+++|++||.|..|.|++|||||+|.+.++|++||+.|||..|.|+.|.|++++..
T Consensus 5 ~~~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 5 HNIPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ----CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred ccCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 45678999999999 87 99999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 030175 81 DS 82 (182)
Q Consensus 81 ~~ 82 (182)
..
T Consensus 84 ~~ 85 (96)
T 2kvi_A 84 AR 85 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 6
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=131.91 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 82 (182)
...+.++|||+|| |..+++++|+++|++||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|++++++..
T Consensus 6 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 6 SGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 4567889999999 899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 030175 83 E 83 (182)
Q Consensus 83 ~ 83 (182)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=136.51 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=75.4
Q ss_pred CCCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 1 s~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
|.+..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 1 m~e~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 1 MVEADHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp CCTTCSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 677889999999999 8899999999999999999999984 48999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 030175 74 VEYALKDDS 82 (182)
Q Consensus 74 V~~a~~~~~ 82 (182)
|++++++..
T Consensus 80 V~~a~~~~~ 88 (116)
T 2fy1_A 80 VEQAKKPSF 88 (116)
T ss_dssp EEECCCSSC
T ss_pred EEECCCCCC
Confidence 999986643
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=8.9e-22 Score=135.38 Aligned_cols=73 Identities=22% Similarity=0.442 Sum_probs=68.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.+++|||+|| |..+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|+||
T Consensus 18 ~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4678999999 899999999999999999999988 2579999999999999999999999999999999999
Q ss_pred ec
Q 030175 78 LK 79 (182)
Q Consensus 78 ~~ 79 (182)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 9
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=131.45 Aligned_cols=79 Identities=23% Similarity=0.417 Sum_probs=74.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 82 (182)
...+.++|||+|| |+.+++++|+++|++||.|..|.|.++||||+|.+.++|++||+.|||..|.|+.|.|+++++...
T Consensus 5 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 5 SSGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SSCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 4567899999999 899999999999999999999999999999999999999999999999999999999999987643
No 10
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=131.43 Aligned_cols=78 Identities=31% Similarity=0.446 Sum_probs=73.3
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccC--CceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~--G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
..+.++|||+|| |+.+++++|+++|++| |.|..|.+.++||||+|.+.++|++||+.|||..|.|+.|.|++++++.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 12 MSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp SSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred cCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 456889999999 8899999999999999 9999999999999999999999999999999999999999999998764
Q ss_pred C
Q 030175 82 S 82 (182)
Q Consensus 82 ~ 82 (182)
.
T Consensus 91 ~ 91 (99)
T 2cpd_A 91 K 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.8e-21 Score=138.75 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=72.7
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..++++|||+|| |+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 19 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345779999999 8999999999999999999999983 7899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030175 76 YALKDDSE 83 (182)
Q Consensus 76 ~a~~~~~~ 83 (182)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99877554
No 12
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=133.36 Aligned_cols=79 Identities=25% Similarity=0.426 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+..+.++|||+|| |..+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|+++
T Consensus 18 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4556789999999 8899999999999999999999983 689999999999999999999999999999999999
Q ss_pred ecCCC
Q 030175 78 LKDDS 82 (182)
Q Consensus 78 ~~~~~ 82 (182)
+....
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87543
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.7e-21 Score=131.27 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
.+..+.++|||+|| |+.+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 35567899999999 8999999999999999999999984 5899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030175 76 YALKDDSE 83 (182)
Q Consensus 76 ~a~~~~~~ 83 (182)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99876544
No 14
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=5.2e-21 Score=130.94 Aligned_cols=77 Identities=23% Similarity=0.555 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCCC-CCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 3 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..+++++|||+|| |. .+++++|+++|++||.|..|.|.+|||||+|.+.++|++||+.|||..|.|+.|.|++++.+
T Consensus 18 ~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4567899999999 87 99999999999999999999999999999999999999999999999999999999999764
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=129.67 Aligned_cols=80 Identities=31% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
...+.++|||+|| |+.+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999 8999999999999999999999985 78999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030175 77 ALKDDSE 83 (182)
Q Consensus 77 a~~~~~~ 83 (182)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=129.02 Aligned_cols=81 Identities=26% Similarity=0.412 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
....+.++|||+|| |+.+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 3 SGSSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CCCCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 45678899999999 8899999999999999999999982 58999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 030175 74 VEYALKDDSE 83 (182)
Q Consensus 74 V~~a~~~~~~ 83 (182)
|++++++...
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999876543
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=127.96 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=72.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..++++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 2 ~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 2 SSGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 467899999999 8899999999999999999999883 5799999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
++.++..
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 9987653
No 18
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=132.10 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCc--cCCcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~--~~g~~l~V~~a~ 78 (182)
..+|+++|||+|| |+.+++++|.++|++||.|..|.|. +|||||+|++.++|++||+.|++.. |.|+.|.|++++
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4578999999999 8999999999999999999999884 7999999999999999999999876 789999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
.+.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 19
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.85 E-value=4.2e-21 Score=133.97 Aligned_cols=76 Identities=20% Similarity=0.404 Sum_probs=71.4
Q ss_pred CCCEEEEccCCCCC-CCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCCC
Q 030175 6 PTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (182)
Q Consensus 6 ~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 82 (182)
+.++|||+|| |+. +++++|+++|++||+|..|.|.++||||+|.+.++|++||+.||+..|+|+.|.|++++.+..
T Consensus 26 ~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 26 INSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 4589999999 888 999999999999999999999999999999999999999999999999999999999986543
No 20
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9e-21 Score=130.62 Aligned_cols=80 Identities=23% Similarity=0.463 Sum_probs=73.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
+..+.++|||+|| |+.+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4557899999999 8899999999999999999999885 68999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030175 77 ALKDDSE 83 (182)
Q Consensus 77 a~~~~~~ 83 (182)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876543
No 21
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=133.96 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=71.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
.+++.++|||+|| ++.+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 2 g~~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 2 GQIPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3578899999999 899999999999999999999988 3689999999999999999999999999999999
Q ss_pred EEeecC
Q 030175 75 EYALKD 80 (182)
Q Consensus 75 ~~a~~~ 80 (182)
+++...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 999644
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=130.51 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=73.4
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |+.+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 5567899999999 899999999999999999999998 2579999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030175 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
+++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=128.42 Aligned_cols=80 Identities=23% Similarity=0.452 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
.+..+.++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+ ||+..|.|+.|.
T Consensus 5 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 5 SSGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 35668899999999 899999999999999999999998 36899999999999999998 999999999999
Q ss_pred EEEeecCCCC
Q 030175 74 VEYALKDDSE 83 (182)
Q Consensus 74 V~~a~~~~~~ 83 (182)
|+++.++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 24
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6e-21 Score=130.21 Aligned_cols=79 Identities=24% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHH----HhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
...+.++|||+|| |+.+++++|+ ++|++||+|..|.|. ++||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 5 ~~~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 5 SSGNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp CCSSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4556789999999 8999999999 999999999999996 89999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 030175 74 VEYALKDDS 82 (182)
Q Consensus 74 V~~a~~~~~ 82 (182)
|++|++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999986543
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.5e-21 Score=130.18 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=73.4
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 8 ~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4567899999999 8999999999999999999999983 579999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030175 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
++++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 26
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-21 Score=132.44 Aligned_cols=77 Identities=18% Similarity=0.318 Sum_probs=70.4
Q ss_pred CCCCCEEEEccCCCC-CCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCC--ccCCcEEEEEEee
Q 030175 4 QRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYAL 78 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~ 78 (182)
..++++|||+|| |+ .+++++|+++|++||.|..|.|+ ++||||+|++.++|++||+.||+. .|.|+.|.|++|+
T Consensus 12 ~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 457899999999 89 99999999999999999999985 589999999999999999999864 5999999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 27
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-21 Score=129.62 Aligned_cols=80 Identities=18% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCc-eEEEEE-eCCEEEEEeCCHHHHHHHHHhcCC-CccCCcEEEEEEee
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRI-RRNFAFVQFETQEEATKALESTDR-SKLVDRVISVEYAL 78 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~~~i-~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~~a~ 78 (182)
....+.++|||+|| |.++++++|+++|++||. |..+.| .++||||+|.+.++|++||+.||| ..|.|+.|.|++++
T Consensus 3 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 3 SGSSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 45678899999999 899999999999999999 665555 689999999999999999999999 99999999999998
Q ss_pred cCCC
Q 030175 79 KDDS 82 (182)
Q Consensus 79 ~~~~ 82 (182)
++..
T Consensus 82 ~~~~ 85 (93)
T 2cqh_A 82 SKKL 85 (93)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7643
No 28
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.84 E-value=3.9e-21 Score=135.48 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=65.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeC-CEEEEEeCCHHHHHHHHHhcCCCccCCcE-----EEEEEee
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVDRV-----ISVEYAL 78 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-----l~V~~a~ 78 (182)
...++|||+|| |+++++++|+++|++||+|+.|.|.. |||||+|++.++|++||+.|||++|+|+. |+|..+.
T Consensus 14 r~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 35689999999 89999999999999999999999976 99999999999999999999999999988 6666654
Q ss_pred c
Q 030175 79 K 79 (182)
Q Consensus 79 ~ 79 (182)
+
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.5e-21 Score=130.50 Aligned_cols=79 Identities=34% Similarity=0.438 Sum_probs=72.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4567899999999 8999999999999999999999883 689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 030175 75 EYALKDDS 82 (182)
Q Consensus 75 ~~a~~~~~ 82 (182)
++++....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987543
No 30
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.8e-21 Score=133.51 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCC--CccCCcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~V~~a~ 78 (182)
.+.+.++|||+|| |+.+++++|+++|++||+|+.|.|. +|||||+|++.++|++||+.|++ ..|.|+.|.|++|+
T Consensus 12 ~~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 4678999999999 8999999999999999999999985 79999999999999999998864 78999999999998
Q ss_pred cCCCC
Q 030175 79 KDDSE 83 (182)
Q Consensus 79 ~~~~~ 83 (182)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76544
No 31
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=129.13 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhc--CCCccCCcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST--DRSKLVDRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~~a~ 78 (182)
..+++++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|++.++|++||+.| ++..|.|+.|.|++++
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 11 DGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 3467899999999 8999999999999999999999885 699999999999999999977 4678999999999998
Q ss_pred cCCCCC
Q 030175 79 KDDSER 84 (182)
Q Consensus 79 ~~~~~~ 84 (182)
.+....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 765543
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=2.9e-20 Score=130.47 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=73.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |+.+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567889999999 8999999999999999999999883 579999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 030175 75 EYALKDDSER 84 (182)
Q Consensus 75 ~~a~~~~~~~ 84 (182)
++++++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998765543
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=7.4e-21 Score=134.00 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=69.5
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
....+|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+++.
T Consensus 3 ~~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 3 LGSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35678999999 8899999999999999999999883 6899999999999999999999999999999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 34
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=7.5e-21 Score=132.67 Aligned_cols=78 Identities=31% Similarity=0.573 Sum_probs=73.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
...+.++|||+|| |..+++++|+++|++||.|..|.|.+|||||+|.+.++|++||+.|||..|.|+.|.|++++++.
T Consensus 27 ~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 27 GELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp -CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 4557899999999 89999999999999999999999999999999999999999999999999999999999998754
No 35
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=130.36 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCC--ccCCcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~ 78 (182)
..+++++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|++.++|++||+.|++. .|.|+.|.|++++
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 4567899999999 8999999999999999999999885 799999999999999999988764 5899999999998
Q ss_pred cCCCCC
Q 030175 79 KDDSER 84 (182)
Q Consensus 79 ~~~~~~ 84 (182)
.+....
T Consensus 90 ~~~~~~ 95 (104)
T 1wex_A 90 SKRITR 95 (104)
T ss_dssp SSSCCC
T ss_pred CccccC
Confidence 765443
No 36
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=130.15 Aligned_cols=80 Identities=25% Similarity=0.490 Sum_probs=72.9
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3557899999999 8899999999999999999999883 569999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030175 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
++++++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=128.51 Aligned_cols=79 Identities=27% Similarity=0.522 Sum_probs=72.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEE-EEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~-~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
..+.++|||+|| |..+++++|+++|++||.|..| .|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 2 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 2 SSGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp CSCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 457899999999 8899999999999999999888 772 689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030175 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
+++.++...
T Consensus 81 ~~a~~~~~~ 89 (96)
T 1x5t_A 81 SYAFKKDSK 89 (96)
T ss_dssp EESCCCCCC
T ss_pred EEecccCCC
Confidence 999876543
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=130.07 Aligned_cols=80 Identities=28% Similarity=0.508 Sum_probs=73.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.++|||+|| |+.+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 8 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3457899999999 889999999999999999999988 3789999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030175 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
++++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876544
No 39
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=128.45 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=72.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccC--CcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a~ 78 (182)
...+.++|||+|| |..+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|. |+.|.|++++
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3457799999999 8899999999999999999999995 679999999999999999999999999 9999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=135.49 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=72.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 8999999999999999999999883 689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030175 75 EYALKDDSE 83 (182)
Q Consensus 75 ~~a~~~~~~ 83 (182)
++++.....
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 41
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.7e-20 Score=138.60 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=72.0
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+.++|||+|| |+.+++++|+++|++||+|..|.| .++||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 36 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 357899999999 899999999999999999999998 35799999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
||++...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987543
No 42
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=124.22 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=70.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 5689999999 899999999999999999999988 578999999999999999999999999999999999
Q ss_pred eecCC
Q 030175 77 ALKDD 81 (182)
Q Consensus 77 a~~~~ 81 (182)
+.++.
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 43
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.1e-20 Score=124.13 Aligned_cols=75 Identities=29% Similarity=0.561 Sum_probs=70.4
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.++|||+|| |..+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 3 ~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4568899999999 889999999999999999999988 4789999999999999999999999999999999
Q ss_pred EEee
Q 030175 75 EYAL 78 (182)
Q Consensus 75 ~~a~ 78 (182)
++|+
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=1.7e-20 Score=126.47 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
....+.++|||+|| |..+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 3 SGSSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp CSSSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678899999999 8999999999999999999999884 6899999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
++++...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987653
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=127.39 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=72.4
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 13 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456889999999 8999999999999999999999884 4899999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987653
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=3.4e-20 Score=128.02 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=72.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCC---cEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVD---RVIS 73 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~ 73 (182)
..+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 356899999999 8999999999999999999999984 6899999999999999999999999988 9999
Q ss_pred EEEeecCCCC
Q 030175 74 VEYALKDDSE 83 (182)
Q Consensus 74 V~~a~~~~~~ 83 (182)
|++++++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876544
No 47
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=133.14 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=73.1
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCC--CccCCcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~V~~a~ 78 (182)
..+++++|||+|| |+.+++++|+++|++||.|+.|.|. +|||||+|++.++|++||+.|++ ..|.|+.|.|++|+
T Consensus 27 ~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 27 AGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 4567899999999 8999999999999999999999985 79999999999999999998874 68999999999998
Q ss_pred cCCCCC
Q 030175 79 KDDSER 84 (182)
Q Consensus 79 ~~~~~~ 84 (182)
.+..+.
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 766543
No 48
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=1.9e-20 Score=131.56 Aligned_cols=79 Identities=20% Similarity=0.438 Sum_probs=72.0
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 8999999999999999999999883 4799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030175 76 YALKDDSE 83 (182)
Q Consensus 76 ~a~~~~~~ 83 (182)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=125.29 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=67.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 3 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 3 LGSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp ---CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 456789999999 8899999999999999999999883 5799999999999999999999999999999999
Q ss_pred EeecC
Q 030175 76 YALKD 80 (182)
Q Consensus 76 ~a~~~ 80 (182)
+++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99865
No 50
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=127.08 Aligned_cols=79 Identities=29% Similarity=0.439 Sum_probs=72.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
...+.++|||+|| |..+++++|+++|++||+|..|.|. ++||||+|.+.++|++||+.|||..|.|+.|.|++++++
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3456789999999 8899999999999999999999985 699999999999999999999999999999999999876
Q ss_pred CC
Q 030175 81 DS 82 (182)
Q Consensus 81 ~~ 82 (182)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=128.32 Aligned_cols=80 Identities=30% Similarity=0.475 Sum_probs=73.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcC------CCccC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTD------RSKLV 68 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~------g~~~~ 68 (182)
+..+.++|||+|| |+.+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|| +..|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 4567889999999 8999999999999999999999983 7899999999999999999999 99999
Q ss_pred CcEEEEEEeecCCCC
Q 030175 69 DRVISVEYALKDDSE 83 (182)
Q Consensus 69 g~~l~V~~a~~~~~~ 83 (182)
|+.|.|+++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 52
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.5e-20 Score=125.80 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
..+..|||+|| ++.++|++|+++|.+||+|..+.| ++|||||+|.+.++|++||+.||+++|.|+.|.|++|.
T Consensus 5 ~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 35778999999 789999999999999999999988 59999999999999999999999999999999999984
No 53
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=9.6e-21 Score=132.93 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEEe----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.+....+|||+|| |+.+++++|+++|++|| +|..+.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+++
T Consensus 24 ~p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 24 LPAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp -CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3456779999999 89999999999999999 89999883 799999999999999999999999999999999998
Q ss_pred ecC
Q 030175 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
..+
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=126.17 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=71.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
..+.++|||+|| |+.+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 2 s~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 2 SSGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 357889999999 8999999999999999999998883 3699999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 030175 73 SVEYALKDDS 82 (182)
Q Consensus 73 ~V~~a~~~~~ 82 (182)
.|+++++...
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 9999987653
No 55
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=127.93 Aligned_cols=78 Identities=19% Similarity=0.387 Sum_probs=70.9
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.++|||+|| |+.+++++|+++|++||+|..|.|. ++||||+|.+.++|++||+.|++ .|.|+.|.|
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 4557899999999 8999999999999999999999983 57999999999999999999998 899999999
Q ss_pred EEeecCCC
Q 030175 75 EYALKDDS 82 (182)
Q Consensus 75 ~~a~~~~~ 82 (182)
+++.....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=125.35 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=69.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
..++.++|||+|| |..+++++|+++|++||+|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3567889999999 8999999999999999999999983 579999999999999999999999999999999
Q ss_pred EEee
Q 030175 75 EYAL 78 (182)
Q Consensus 75 ~~a~ 78 (182)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=126.85 Aligned_cols=78 Identities=27% Similarity=0.326 Sum_probs=71.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
+..+.++|||+|| |+.+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 4556889999999 8999999999999999999999883 5799999999999999999999999999999999
Q ss_pred EeecCC
Q 030175 76 YALKDD 81 (182)
Q Consensus 76 ~a~~~~ 81 (182)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997644
No 58
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=128.02 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhcc-CCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCc-cCCcEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSK-LVDRVIS 73 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~-~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g~~l~ 73 (182)
+..+.++|||+|| |+.+++++|+++|.+ ||.|..|.| .+|||||+|.+.++|++||+.||+.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4567899999999 899999999999999 999999988 36899999999999999999999999 9999999
Q ss_pred EEEeecCCCC
Q 030175 74 VEYALKDDSE 83 (182)
Q Consensus 74 V~~a~~~~~~ 83 (182)
|+++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999866543
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=4e-20 Score=125.87 Aligned_cols=75 Identities=20% Similarity=0.465 Sum_probs=70.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
|+++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 5789999999 8999999999999999999999983 689999999999999999999999999999999999
Q ss_pred ecCC
Q 030175 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
.++.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8754
No 60
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=128.54 Aligned_cols=80 Identities=18% Similarity=0.429 Sum_probs=73.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.|||..|.|+.|.|.|+++.
T Consensus 21 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 3456889999999 8899999999999999999999985 799999999999999999999999999999999999876
Q ss_pred CCC
Q 030175 81 DSE 83 (182)
Q Consensus 81 ~~~ 83 (182)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 61
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=122.98 Aligned_cols=75 Identities=24% Similarity=0.454 Sum_probs=69.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhc-CCCccCCcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l-~g~~~~g~~l~V~~a~ 78 (182)
+..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.| ++..|.|+.|.|+||+
T Consensus 8 ~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4557889999999 8899999999999999999999985 699999999999999999999 9999999999999985
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=126.45 Aligned_cols=78 Identities=27% Similarity=0.445 Sum_probs=70.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
...+.++|||+|| |+.+++++|+++|.+|| |..|.|+ +|||||+|.+.++|++|| .||+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3456789999999 89999999999999999 9999883 679999999999999999 8999999999999
Q ss_pred EEEeecCCCC
Q 030175 74 VEYALKDDSE 83 (182)
Q Consensus 74 V~~a~~~~~~ 83 (182)
|+++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 63
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=3.9e-20 Score=127.96 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=72.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCcc---CCcE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKL---VDRV 71 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~ 71 (182)
...+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..+ .|+.
T Consensus 9 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4567889999999 8999999999999999999999983 58999999999999999999999987 8999
Q ss_pred EEEEEeecCCC
Q 030175 72 ISVEYALKDDS 82 (182)
Q Consensus 72 l~V~~a~~~~~ 82 (182)
|.|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 64
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=4.2e-20 Score=122.15 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=69.0
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
+.+|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+++.
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 468999999 8899999999999999999999883 6899999999999999999999999999999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=127.99 Aligned_cols=76 Identities=26% Similarity=0.494 Sum_probs=70.6
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.++++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 21 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999 8899999999999999999999883 68999999999999999999999999999999999
Q ss_pred eecCC
Q 030175 77 ALKDD 81 (182)
Q Consensus 77 a~~~~ 81 (182)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=128.70 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=72.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceE--------EEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRI--------RRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~--------~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
+..+.++|||+|| |+.+++++|+++|.+||.|. .|.| .+|||||+|.+.++|++||+.||+..
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3457899999999 89999999999999999998 5777 26899999999999999999999999
Q ss_pred cCCcEEEEEEeecCCCC
Q 030175 67 LVDRVISVEYALKDDSE 83 (182)
Q Consensus 67 ~~g~~l~V~~a~~~~~~ 83 (182)
|.|+.|.|++++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876543
No 67
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-20 Score=130.78 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=70.9
Q ss_pred CCCCCCEEEEccCCCCC-CCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCC--CccCCcEEEEEEe
Q 030175 3 NQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~l~V~~a 77 (182)
...++++|||+|| |+. +++++|+++|++||+|..|.|. +|||||+|++.++|++||+.||+ ..|.|+.|.|++|
T Consensus 21 ~~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3567899999999 887 9999999999999999999984 69999999999999999998864 5699999999999
Q ss_pred ecCCC
Q 030175 78 LKDDS 82 (182)
Q Consensus 78 ~~~~~ 82 (182)
+.+..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 86543
No 68
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=127.70 Aligned_cols=76 Identities=24% Similarity=0.457 Sum_probs=68.0
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcC-CCccCCcEEEEEE
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI--------RRNFAFVQFETQEEATKALESTD-RSKLVDRVISVEY 76 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~V~~ 76 (182)
+.+|||+|| |..+++++|+++|++|| +|..|.| .+|||||+|.+.++|++||+.|+ +..|.|+.|.|++
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 478999999 89999999999999999 8998887 37899999999999999999874 5689999999999
Q ss_pred eecCCCC
Q 030175 77 ALKDDSE 83 (182)
Q Consensus 77 a~~~~~~ 83 (182)
|.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=125.99 Aligned_cols=76 Identities=36% Similarity=0.504 Sum_probs=70.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
++.+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567889999999 8899999999999999999999883 579999999999999999999999999999999
Q ss_pred EEeec
Q 030175 75 EYALK 79 (182)
Q Consensus 75 ~~a~~ 79 (182)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 70
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=5.6e-20 Score=125.11 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHH----HhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
.+.+++++|||+|| |..+++++|+ ++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 3 ~~~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 3 PETRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp ---CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 46678999999999 8999999999 999999999999884 7999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 030175 73 SVEYALKDD 81 (182)
Q Consensus 73 ~V~~a~~~~ 81 (182)
.|++++++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 71
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=5.5e-20 Score=127.40 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=70.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567889999999 8999999999999999999999884 6899999999999999999999999999999999
Q ss_pred Eee
Q 030175 76 YAL 78 (182)
Q Consensus 76 ~a~ 78 (182)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 72
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=125.48 Aligned_cols=80 Identities=29% Similarity=0.569 Sum_probs=73.1
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---------CCEEEEEeCCHHHHHHHHHhc-CCCccCCcEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALEST-DRSKLVDRVI 72 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---------~g~afV~f~~~~~a~~Ai~~l-~g~~~~g~~l 72 (182)
...+.++|||+|| |..+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||+.| |+..|.|+.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 4567899999999 8999999999999999999999982 579999999999999999999 9999999999
Q ss_pred EEEEeecCCCC
Q 030175 73 SVEYALKDDSE 83 (182)
Q Consensus 73 ~V~~a~~~~~~ 83 (182)
.|++++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=126.48 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=71.9
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceE-EEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcE-
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL-HVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRV- 71 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~-~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~- 71 (182)
....+.++|||+|| |..+++++|+++|++||+|. .|.|. +|||||+|.+.++|++||+.|||..|.|..
T Consensus 4 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 4 GSSGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 45668899999999 88999999999999999999 98882 489999999999999999999999999999
Q ss_pred ---EEEEEeecCC
Q 030175 72 ---ISVEYALKDD 81 (182)
Q Consensus 72 ---l~V~~a~~~~ 81 (182)
|+|++|++..
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999997653
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=5.9e-20 Score=127.92 Aligned_cols=77 Identities=22% Similarity=0.477 Sum_probs=71.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 24 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999 8899999999999999999999983 68999999999999999999999999999999999
Q ss_pred eecCCC
Q 030175 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987653
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=128.69 Aligned_cols=77 Identities=34% Similarity=0.564 Sum_probs=72.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
+..+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 25 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999 8899999999999999999999984 78999999999999999999999999999999999
Q ss_pred eecC
Q 030175 77 ALKD 80 (182)
Q Consensus 77 a~~~ 80 (182)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 76
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=125.76 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=69.0
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
.+..++|||+|| |+.+++++|+++|++||.|. +.| .+|||||+|.+.++|++||+.|||..|.|+.|.|+++++
T Consensus 16 ~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345889999999 89999999999999999986 444 389999999999999999999999999999999999987
Q ss_pred CC
Q 030175 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 77
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.4e-20 Score=125.03 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
...+.++|||+|| |+.+++++|+++|.+||.|.-+.. .+|||||+|.+.++|++||+.||+..|.|+.|.|++++
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4457899999999 899999999999999998843322 47899999999999999999999999999999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
++.
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 78
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=124.81 Aligned_cols=77 Identities=29% Similarity=0.463 Sum_probs=69.9
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.++|||+|| |+.+++++|+++|.+|| |..|.|+ +|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4567889999999 89999999999999997 9999883 579999999999999999 89999999999999
Q ss_pred EEeecCCC
Q 030175 75 EYALKDDS 82 (182)
Q Consensus 75 ~~a~~~~~ 82 (182)
+++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987653
No 79
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=8.1e-20 Score=125.01 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=69.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE--------EEEe--------CCEEEEEeCCHHHHHHHHHhcCCCc
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRIR--------RNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
.+.+.++|||+|| |..+++++|+++|++||.|.. |.|. +|||||+|.+.++|++||+.|||..
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667899999999 899999999999999999998 7772 5799999999999999999999999
Q ss_pred cCCcEEEEEEee
Q 030175 67 LVDRVISVEYAL 78 (182)
Q Consensus 67 ~~g~~l~V~~a~ 78 (182)
|.|+.|.|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999984
No 80
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=131.25 Aligned_cols=78 Identities=14% Similarity=0.307 Sum_probs=70.6
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHH----HhhccCCceEEEEE-----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~i-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
+..++++|||+|| ++.+++++|+ ++|++||+|..|.| .+|||||+|.+.++|+.||+.|||..|.|+.|.
T Consensus 25 ~~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3567889999999 8899998865 79999999999988 369999999999999999999999999999999
Q ss_pred EEEeecCC
Q 030175 74 VEYALKDD 81 (182)
Q Consensus 74 V~~a~~~~ 81 (182)
|+||+.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=3.9e-20 Score=133.00 Aligned_cols=78 Identities=35% Similarity=0.566 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
++.+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 42 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567899999999 8999999999999999999999883 689999999999999999999999999999999
Q ss_pred EEeecCC
Q 030175 75 EYALKDD 81 (182)
Q Consensus 75 ~~a~~~~ 81 (182)
+++++++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998754
No 82
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.7e-20 Score=127.08 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=70.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
....++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||..|||..|.|+.|.|.|+++
T Consensus 24 ~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 445789999999 889999999999999999999998 489999999999999999999999999999999999875
No 83
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=127.84 Aligned_cols=79 Identities=27% Similarity=0.481 Sum_probs=70.7
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCce----EEEEE----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i----~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..++++|||+|| |+.+++++|+++|.+||.| ..+.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456789999999 8999999999999999998 55555 37999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030175 76 YALKDDSE 83 (182)
Q Consensus 76 ~a~~~~~~ 83 (182)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876544
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.6e-20 Score=127.93 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=70.8
Q ss_pred CCCCCEEEEccCCCCCCCHHHHH---HhhccCCceEEEEEe-----------CCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030175 4 QRPTKTLFVINFDPIRTRERDIK---RHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~---~~F~~~G~i~~~~i~-----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
....++|||+|| |+.+++++|+ ++|.+||+|..|.|. +|||||+|.+.++|++||+.|||..|.|
T Consensus 12 ~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 345789999999 8999999999 999999999999883 2699999999999999999999999999
Q ss_pred cEEEEEEeecCC
Q 030175 70 RVISVEYALKDD 81 (182)
Q Consensus 70 ~~l~V~~a~~~~ 81 (182)
+.|.|++|.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 85
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=9.9e-20 Score=126.91 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=71.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 22 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4557889999999 8899999999999999999999883 579999999999999999999999999999999
Q ss_pred EEeecCC
Q 030175 75 EYALKDD 81 (182)
Q Consensus 75 ~~a~~~~ 81 (182)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998653
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=9.2e-20 Score=136.01 Aligned_cols=78 Identities=22% Similarity=0.476 Sum_probs=70.1
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.++++|||+|| |+.+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.|
T Consensus 70 ~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34668999999 8899999999999999999999883 68999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030175 77 ALKDDSE 83 (182)
Q Consensus 77 a~~~~~~ 83 (182)
+.++...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9876543
No 87
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=124.55 Aligned_cols=76 Identities=28% Similarity=0.377 Sum_probs=70.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
...+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 12 ~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 4456789999999 8899999999999999999999883 5799999999999999999999999999999999
Q ss_pred Eeec
Q 030175 76 YALK 79 (182)
Q Consensus 76 ~a~~ 79 (182)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 88
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=121.41 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=70.0
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
..+.++|||+|| .+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+++.++.
T Consensus 12 ~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 12 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 456789999998 58999999999999999999984 8999999999999999999999999999999999998765
Q ss_pred C
Q 030175 82 S 82 (182)
Q Consensus 82 ~ 82 (182)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=124.00 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-----eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
...+.++|||+|| |..+++++|+++|++|+.|..+.. .+|||||+|.+.++|++||+.||+..|.|+.|.|+++
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 11 RSQPSKTLFVKGL-SEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSCCCSSEEEECC-CTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCC-CCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3567899999999 899999999999999976554433 2589999999999999999999999999999999999
Q ss_pred ecCCC
Q 030175 78 LKDDS 82 (182)
Q Consensus 78 ~~~~~ 82 (182)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87653
No 90
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=127.03 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
.+..+.++|||+|| |+.+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||+. |+..|.|+.|.
T Consensus 11 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 35678899999999 8999999999999999999999883 47999999999999999998 99999999999
Q ss_pred EEEeecCCCC
Q 030175 74 VEYALKDDSE 83 (182)
Q Consensus 74 V~~a~~~~~~ 83 (182)
|+++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=9.7e-20 Score=128.35 Aligned_cols=75 Identities=21% Similarity=0.466 Sum_probs=69.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |+.+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 36 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 8999999999999999999999983 689999999999999999999999999999999
Q ss_pred EEee
Q 030175 75 EYAL 78 (182)
Q Consensus 75 ~~a~ 78 (182)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 92
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=7.8e-20 Score=125.44 Aligned_cols=73 Identities=26% Similarity=0.404 Sum_probs=68.9
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|++++++.
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999 8899999999999999999999983 7899999999999999999999999999999999998765
No 93
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=127.16 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=69.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..++|||+|| |+.+++++|+++|++||.|..|.| .++||||+|.+.++|++||+.|||..|.|+.|.|+||...
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4579999999 899999999999999999999998 5799999999999999999999999999999999999854
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4.6e-20 Score=126.81 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCCCEEEEccCCCC------CCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030175 4 QRPTKTLFVINFDPI------RTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~------~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
...+++|||+|| |+ .+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|
T Consensus 3 ~~~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 3 LGSDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp SCGGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCcCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 345789999999 89 8999999999999999999988 37999999999999999999999999999
Q ss_pred -cEEEEEEeecC
Q 030175 70 -RVISVEYALKD 80 (182)
Q Consensus 70 -~~l~V~~a~~~ 80 (182)
+.|.|.+|.+.
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999999753
No 95
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=8.8e-20 Score=124.58 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=67.5
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCc--eEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCC----ccC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN--VLHVRI--------RRNFAFVQFETQEEATKALESTDRS----KLV 68 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~--i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~----~~~ 68 (182)
....-.+|||+|| |+.+|+++|+++|++||. |..|.| .+|||||+|.+.++|++||+.|||. .|+
T Consensus 5 ~~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 5 HHHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp SSCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred cCCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 3456789999999 889999999999999995 567776 3789999999999999999999997 489
Q ss_pred CcEEEEEEeec
Q 030175 69 DRVISVEYALK 79 (182)
Q Consensus 69 g~~l~V~~a~~ 79 (182)
|+.|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999974
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.9e-20 Score=124.66 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=68.6
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
.....++|||+|| |+.+++++|+++|.+||.|..+.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3456789999999 899999999999999999875443 3689999999999999999999999999999999
Q ss_pred EEeecC
Q 030175 75 EYALKD 80 (182)
Q Consensus 75 ~~a~~~ 80 (182)
+++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998754
No 97
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=2.7e-19 Score=125.50 Aligned_cols=78 Identities=21% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
++.++++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+++
T Consensus 4 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 4 PPEVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CTTCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567899999999 8999999999999999999999983 689999999999999999999999999999999999
Q ss_pred ecCC
Q 030175 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8643
No 98
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=3.1e-20 Score=125.08 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=63.1
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCC--ceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.+|||+|| |+.+++++|+++|++|| .|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 89999999999999999 9999887 3679999999999999999999999999999999999
Q ss_pred ecCCC
Q 030175 78 LKDDS 82 (182)
Q Consensus 78 ~~~~~ 82 (182)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87653
No 99
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=126.03 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=70.6
Q ss_pred CCCCCCEEEE--ccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCcc-----CCcEEE
Q 030175 3 NQRPTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKL-----VDRVIS 73 (182)
Q Consensus 3 ~~~~~~~l~V--~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~-----~g~~l~ 73 (182)
...++.+||| +|| ++.+++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||.+| .|..|.
T Consensus 21 ~~~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3567899999 779 8999999999999999999999884 78999999999999999999999988 688999
Q ss_pred EEEeecCC
Q 030175 74 VEYALKDD 81 (182)
Q Consensus 74 V~~a~~~~ 81 (182)
|.++...+
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99997554
No 100
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=122.41 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=70.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
...+.++|||+|| |..+++++|+++|.+||.|..+.. .+|||||+|.+.++|++||+.|||..|.|+.|.|+++.+
T Consensus 12 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3456789999999 899999999999999999877722 478999999999999999999999999999999999986
Q ss_pred CC
Q 030175 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
+.
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 101
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=118.59 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=69.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
......+|||+|| |+.+++++|+++|++| .|..|.|+ +|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 4456889999999 8999999999999999 89999883 6799999999999999999 99999999999999
Q ss_pred EeecCC
Q 030175 76 YALKDD 81 (182)
Q Consensus 76 ~a~~~~ 81 (182)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 102
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=120.60 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=69.9
Q ss_pred CCCCCCCE-EEEccCCCCCCCHHH----HHHhhccCC-ceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 2 ANQRPTKT-LFVINFDPIRTRERD----IKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 2 ~~~~~~~~-l~V~nL~p~~~~e~~----L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
...+|+.+ |||+|| |+.+++++ |+++|++|| +|..|. .|+|||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 3 ~~~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 3 SGSSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSCCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 45677888 999999 89999887 568999994 999984 5999999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
+|+....
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9987654
No 103
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=6.9e-20 Score=124.18 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=65.7
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
.++.++|||+|| |+.+++++|+++|.+||.|..+.| .+|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 445789999999 899999999999999999876554 36899999999999999999999999999999999
Q ss_pred Eeec
Q 030175 76 YALK 79 (182)
Q Consensus 76 ~a~~ 79 (182)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 104
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-20 Score=125.85 Aligned_cols=76 Identities=25% Similarity=0.506 Sum_probs=70.4
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 6 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 35689999999 8999999999999999999999883 68999999999999999999999999999999999
Q ss_pred eecCC
Q 030175 77 ALKDD 81 (182)
Q Consensus 77 a~~~~ 81 (182)
+.++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98654
No 105
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=7.2e-19 Score=125.04 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=72.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
...++++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 31 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999 8899999999999999999999983 6899999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987543
No 106
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.9e-19 Score=121.63 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=71.1
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCc-eEEEEEe---------CCEEEEEeCCHHHHHHHHHhcC--CCccCCcE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRIR---------RNFAFVQFETQEEATKALESTD--RSKLVDRV 71 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~~~i~---------~g~afV~f~~~~~a~~Ai~~l~--g~~~~g~~ 71 (182)
..+.++|||+|| |+.+++++|+++|.+||. |..|.|. +|||||+|.+.++|++||+.|| +..|.|+.
T Consensus 5 s~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 456789999999 899999999999999998 9999884 6899999999999999999996 58999999
Q ss_pred EEEEEeecCCC
Q 030175 72 ISVEYALKDDS 82 (182)
Q Consensus 72 l~V~~a~~~~~ 82 (182)
|.|++|+++..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 107
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=6.2e-19 Score=117.66 Aligned_cols=73 Identities=29% Similarity=0.530 Sum_probs=67.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+ +++..|.|+.|.|
T Consensus 7 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 4567899999999 8999999999999999999999883 6799999999999999996 5888999999999
Q ss_pred EEe
Q 030175 75 EYA 77 (182)
Q Consensus 75 ~~a 77 (182)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 108
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=3.9e-19 Score=127.73 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=68.0
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCE-EEEEeCCHHHHHHHHHhcCCCccCC--cEEEEEEeec
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYALK 79 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~-afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~ 79 (182)
+...|||+|| ++.+++++|+++|++||+|..|.|. ++| |||+|.+.++|++|++.|||..|.| ..|+|+|++.
T Consensus 27 ~VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 4456779999 8999999999999999999999883 577 9999999999999999999999988 8999999987
Q ss_pred CC
Q 030175 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 109
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=6.8e-19 Score=122.80 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=67.4
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+..+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.+ +..|.|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 4567889999999 8999999999999999999999982 689999999999999999976 59999999999
Q ss_pred EEeecCCC
Q 030175 75 EYALKDDS 82 (182)
Q Consensus 75 ~~a~~~~~ 82 (182)
+++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 110
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=124.24 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=68.4
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..+.++|||+|| |+.+++++|+++|++||+|..|.|+ +|||||+|.+.++|++||. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 445789999999 8999999999999999999999984 6999999999999999998 899999999999998
Q ss_pred eec
Q 030175 77 ALK 79 (182)
Q Consensus 77 a~~ 79 (182)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 111
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=123.90 Aligned_cols=74 Identities=22% Similarity=0.449 Sum_probs=68.6
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.++|||+|| |+.+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+. ++..|.|+.|.|+++.
T Consensus 27 ~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 579999999 8999999999999999999999883 57999999999999999997 9999999999999998
Q ss_pred cCCC
Q 030175 79 KDDS 82 (182)
Q Consensus 79 ~~~~ 82 (182)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 112
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=123.32 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=68.5
Q ss_pred CCCEEEEccCCCCCC------CHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCc-EE
Q 030175 6 PTKTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR-VI 72 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~------~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l 72 (182)
..++|||+|| |+.+ ++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|.|+ .|
T Consensus 14 ~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4689999999 8888 789999999999999999984 69999999999999999999999999998 99
Q ss_pred EEEEeecC
Q 030175 73 SVEYALKD 80 (182)
Q Consensus 73 ~V~~a~~~ 80 (182)
.|+++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 113
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=4.3e-19 Score=118.71 Aligned_cols=73 Identities=25% Similarity=0.429 Sum_probs=67.8
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|| .|||..|.|+.|.|+++
T Consensus 5 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3579999999 8999999999999999999999883 679999999999999999 89999999999999998
Q ss_pred ecC
Q 030175 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
++.
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 114
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.9e-19 Score=130.37 Aligned_cols=78 Identities=33% Similarity=0.469 Sum_probs=71.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 44 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345789999999 8899999999999999999999883 6799999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
+++++..
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 115
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=121.13 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=67.6
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
.+....+|||+|| |+.+++++|+++|.+||.| .|.| .+|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 4456789999999 8999999999999999954 7777 36899999999999999995 79999999999999
Q ss_pred EeecCC
Q 030175 76 YALKDD 81 (182)
Q Consensus 76 ~a~~~~ 81 (182)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 116
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=119.72 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=69.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE-EEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
+.....+|||+|| |+.+++++|+++|.+||.|.. |.| .+|||||+|.+.++|++||+. |+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456889999999 899999999999999999987 766 379999999999999999997 999999999999
Q ss_pred EEeecCC
Q 030175 75 EYALKDD 81 (182)
Q Consensus 75 ~~a~~~~ 81 (182)
.++..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987654
No 117
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=118.15 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=68.3
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeC--C-EEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--N-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~--g-~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
......+|||+|| |+.+++++|+++|.+||.|..|.+.+ + ||||+|.+.++|++||+ ||+..|.|+.|.|+++..
T Consensus 4 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 4 GSSGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCTTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred ccCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4556789999999 89999999999999999999985421 1 99999999999999999 999999999999998875
Q ss_pred CC
Q 030175 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
+.
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 118
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=8.2e-19 Score=125.27 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCE--EEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCE-EEEEeCCHHHHHHHHHhcCCCccCC--cEEEEEEee
Q 030175 6 PTKT--LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYAL 78 (182)
Q Consensus 6 ~~~~--l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~-afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~ 78 (182)
++.+ |||+|| ++.+++++|+++|++||+|..|.|. .|| |||+|.+.++|++|++.|||..|.| ..|.|++|+
T Consensus 22 ps~vl~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 22 GNKVLLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CCSEEEEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CCcEEEEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4444 579999 8999999999999999999999883 486 9999999999999999999999987 589999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 119
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=119.75 Aligned_cols=77 Identities=29% Similarity=0.528 Sum_probs=69.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+.++|||+|| |+.+++++|+++|.+||+|..|.|+ +|||||+|.+.++|++||+ ++..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred ccCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 3456889999999 8999999999999999999999883 5799999999999999998 467999999999
Q ss_pred EEeecCCC
Q 030175 75 EYALKDDS 82 (182)
Q Consensus 75 ~~a~~~~~ 82 (182)
+++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987654
No 120
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=4.5e-19 Score=132.01 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=68.1
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe----CCEEEEEeCCHHHHHHHHHhcCCCccCC--cEEEEEEeec
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALK 79 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~ 79 (182)
...+|||+|| ++.+++++|+++|++||+|..|.|. ++||||+|.+.++|++|++.|||..|.| +.|+|+|+++
T Consensus 45 ~vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3456889999 8999999999999999999999983 5699999999999999999999999966 9999999987
Q ss_pred CC
Q 030175 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 121
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1e-18 Score=129.01 Aligned_cols=77 Identities=34% Similarity=0.484 Sum_probs=71.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+..+|||+|| |+.+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 68 ~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 68 EGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 899999999999999999999998 368999999999999999999999999999999999
Q ss_pred eecCCC
Q 030175 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
++++..
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987643
No 122
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=131.08 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=67.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCC--ceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
...+|||+|| |+.+++++|+++|++|| .|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 89999999999999999 8999988 36899999999999999999999999999999999
Q ss_pred EeecC
Q 030175 76 YALKD 80 (182)
Q Consensus 76 ~a~~~ 80 (182)
+|.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99753
No 123
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=5.7e-19 Score=129.51 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=71.7
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..+.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++++++
T Consensus 70 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 356789999999 8999999999999999999999994 799999999999999999999999999999999999865
Q ss_pred C
Q 030175 81 D 81 (182)
Q Consensus 81 ~ 81 (182)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=120.72 Aligned_cols=73 Identities=18% Similarity=0.400 Sum_probs=67.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..++++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 2 ~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 2 SSGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 467899999999 8999999999999999999999883 6899999999999999999999999999988876
Q ss_pred Ee
Q 030175 76 YA 77 (182)
Q Consensus 76 ~a 77 (182)
++
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=124.33 Aligned_cols=73 Identities=26% Similarity=0.458 Sum_probs=68.0
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.++|||+|| |+.+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|| .||+..|.|+.|.|++++
T Consensus 25 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 469999999 8999999999999999999999983 689999999999999999 899999999999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=121.63 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=69.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCcc--------C
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKL--------V 68 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~--------~ 68 (182)
..+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..| .
T Consensus 22 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 456789999999 8899999999999999999999883 57999999999999999999999999 5
Q ss_pred CcEEEEEEeecC
Q 030175 69 DRVISVEYALKD 80 (182)
Q Consensus 69 g~~l~V~~a~~~ 80 (182)
++.|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999854
No 127
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.1e-18 Score=124.03 Aligned_cols=73 Identities=19% Similarity=0.416 Sum_probs=67.8
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++|| .|||..|.|+.|.|++++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 579999999 8999999999999999999999883 679999999999999999 799999999999999998
Q ss_pred cCC
Q 030175 79 KDD 81 (182)
Q Consensus 79 ~~~ 81 (182)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 128
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=125.95 Aligned_cols=74 Identities=30% Similarity=0.592 Sum_probs=68.4
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
...+..+|||+|| |..+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 59 ~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3457889999999 889999999999999999999988 3789999999999999999999999999999999
Q ss_pred EEe
Q 030175 75 EYA 77 (182)
Q Consensus 75 ~~a 77 (182)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 129
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=7e-19 Score=117.94 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=68.9
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
...++|||+|| |+.+++++|+++|++| +|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|+++...
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45789999999 8999999999999999 9999887 4899999999999999999999999999999999998654
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=121.80 Aligned_cols=74 Identities=30% Similarity=0.471 Sum_probs=66.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
....++|||+|| |..+++++|+++|++|| |..|.|. +|||||+|.+.++|++|| .|||..|.|+.|.|
T Consensus 16 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 456889999999 89999999999999999 9999982 689999999999999999 89999999999999
Q ss_pred EEeecC
Q 030175 75 EYALKD 80 (182)
Q Consensus 75 ~~a~~~ 80 (182)
+++++.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999765
No 131
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=127.96 Aligned_cols=76 Identities=26% Similarity=0.422 Sum_probs=69.3
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE--EEE--------eCCEEEEEeCCHHHHHHHHHhcCCC----ccCC
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--VRI--------RRNFAFVQFETQEEATKALESTDRS----KLVD 69 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~----~~~g 69 (182)
..+.++|||+|| |+.+++++|+++|.+||.|.. |.| .+|||||+|.+. +|++||+.|||. .|.|
T Consensus 20 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 456889999999 899999999999999999966 776 379999999999 999999999999 9999
Q ss_pred cEEEEEEeecCC
Q 030175 70 RVISVEYALKDD 81 (182)
Q Consensus 70 ~~l~V~~a~~~~ 81 (182)
+.|.|+++++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998754
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-19 Score=124.25 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=67.7
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..+..+|||+|| |..+++++|+++|.+||.|..+.| .+|||||+|.+.++|++||+ ||+..|.|+.|.|++
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999 899999999999999997765222 37999999999999999998 999999999999999
Q ss_pred eecCCC
Q 030175 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 986543
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=116.29 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=62.2
Q ss_pred CCEEEEccCCCCCC------CHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCc-EEE
Q 030175 7 TKTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR-VIS 73 (182)
Q Consensus 7 ~~~l~V~nL~p~~~------~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-~l~ 73 (182)
+++|||+|| |..+ ++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+ .|.
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 468999999 8888 779999999999999999984 69999999999999999999999999999 887
Q ss_pred E
Q 030175 74 V 74 (182)
Q Consensus 74 V 74 (182)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 134
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=122.50 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCce-EEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i-~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+..+|||+|| |+.+++++|+++|.+||.| ..|.| .+|||||+|.+.++|++||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 456789999999 8999999999999999999 67777 479999999999999999986 9999999999999
Q ss_pred EeecCC
Q 030175 76 YALKDD 81 (182)
Q Consensus 76 ~a~~~~ 81 (182)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998654
No 135
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-19 Score=126.88 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=67.0
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE-EEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+..+|||+|| |+.+++++|+++|.+||.|.. +.| .+|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 446789999999 899999999999999999866 233 37899999999999999999 99999999999999
Q ss_pred EeecC
Q 030175 76 YALKD 80 (182)
Q Consensus 76 ~a~~~ 80 (182)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99754
No 136
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1e-18 Score=123.63 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=68.3
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCc---eEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~---i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
....++|||+|| |+++++++|+++|++||. |..|.| .+|||||+|.+.++|++||+ ||++.|.|+.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999 899999999999999998 788877 36899999999999999999 999999999999
Q ss_pred EEEeecC
Q 030175 74 VEYALKD 80 (182)
Q Consensus 74 V~~a~~~ 80 (182)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998754
No 137
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=117.75 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=68.5
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEE-EEe----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~-~i~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
...++|||+|| |+.+++++|+++|.+||.|..| .|. .+.|||+|.+.++|++||+.|||..|.|+.|.|+++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34789999999 8999999999999999999999 463 34599999999999999999999999999999999987
Q ss_pred C
Q 030175 80 D 80 (182)
Q Consensus 80 ~ 80 (182)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 138
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=1.4e-18 Score=131.37 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=70.7
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..++++|||+|| |+.+++++|+++|++||+|+.|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 85 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999 8999999999999999999999983 68999999999999999999999999999999999
Q ss_pred eecC
Q 030175 77 ALKD 80 (182)
Q Consensus 77 a~~~ 80 (182)
|...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9754
No 139
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=6.1e-19 Score=114.48 Aligned_cols=67 Identities=27% Similarity=0.494 Sum_probs=62.8
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++|++ ||+..|.|+.|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999 8999999999999999999999882 5899999999999999998 9999999999999875
No 140
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=1.9e-18 Score=122.91 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=70.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
...+.++|||+|| ++++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++++++
T Consensus 35 ~~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3457889999998 48999999999999999999885 899999999999999999999999999999999999876
Q ss_pred C
Q 030175 81 D 81 (182)
Q Consensus 81 ~ 81 (182)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=9.1e-19 Score=137.39 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=67.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCC--ceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..++|||+|| ++.|++++|+++|.+|| .|+.|.| .+|||||+|.+.++|++||+.||++.|.|+.|+|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 5678999999 89999999999999999 9999988 36899999999999999999999999999999999
Q ss_pred EeecC
Q 030175 76 YALKD 80 (182)
Q Consensus 76 ~a~~~ 80 (182)
+|+++
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98743
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=9.2e-19 Score=127.43 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=69.8
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE--------EEE-----eCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI-----RRNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~i-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
...++++|||+|| |+.+++++|+++|.+||.|.. +.+ .+|||||+|.+.++|++||+.|||..|.|
T Consensus 41 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3457889999999 899999999999999998765 333 36899999999999999999999999999
Q ss_pred cEEEEEEeecCCC
Q 030175 70 RVISVEYALKDDS 82 (182)
Q Consensus 70 ~~l~V~~a~~~~~ 82 (182)
+.|.|++|+....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999986543
No 143
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-20 Score=129.93 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=71.7
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEE--------EEE--------eCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI--------RRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
+..+.++|||+|| |..+++++|+++|++||.|.. |.| .+|||||+|.+.++|++||+.||+..
T Consensus 3 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 3 DNSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 4567899999999 899999999999999999987 666 26899999999999999999999999
Q ss_pred cCCcEEEEEEeecCCC
Q 030175 67 LVDRVISVEYALKDDS 82 (182)
Q Consensus 67 ~~g~~l~V~~a~~~~~ 82 (182)
|.|+.|.|++++++..
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 FSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999987653
No 144
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=3.9e-18 Score=131.62 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=70.6
Q ss_pred CCCCEEEEccCCC-CCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 5 RPTKTLFVINFDP-IRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 5 ~~~~~l~V~nL~p-~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
.++++|||+|| + +.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.+++.+
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 46789999999 6 899999999999999999999984 699999999999999999999999999999999999754
Q ss_pred C
Q 030175 81 D 81 (182)
Q Consensus 81 ~ 81 (182)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=3.8e-19 Score=119.41 Aligned_cols=72 Identities=22% Similarity=0.494 Sum_probs=64.9
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.+ |++|++.|||..|.|+.|.|++|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 58999999 8899999999999999999999883 689999999999 9999999999999999999999986
Q ss_pred CC
Q 030175 80 DD 81 (182)
Q Consensus 80 ~~ 81 (182)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.7e-18 Score=125.53 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCc---eEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~---i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
.....+|||+|| |+.+|+++|+++|++||. |..|.| .+|||||+|.+.++|++||+ ||+..|.|+.|.
T Consensus 41 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999 899999999999999998 777877 36899999999999999999 999999999999
Q ss_pred EEEeecC
Q 030175 74 VEYALKD 80 (182)
Q Consensus 74 V~~a~~~ 80 (182)
|.++...
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998643
No 147
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=113.66 Aligned_cols=68 Identities=24% Similarity=0.418 Sum_probs=63.8
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|+ ..|.|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 8999999999999999999999882 6899999999999999999999 9999999999987
No 148
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=9e-19 Score=127.50 Aligned_cols=76 Identities=28% Similarity=0.392 Sum_probs=67.4
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.....+|||+|| |+.+++++|+++|++|| |+.|.| .+|||||+|++.++|++|| .||+..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345779999999 89999999999999999 668887 3789999999999999999 7899999999999999
Q ss_pred eecCCC
Q 030175 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 886654
No 149
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=114.11 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=64.8
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
..++++|||+|| |+.+++++|+++|++||+|..|.|. +|||||+|.+.++|++|+. ....+.|..|.|.++.++
T Consensus 2 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 2 SSGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CSCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCC
Confidence 356799999999 8999999999999999999999984 7999999999999986533 234568999999998876
Q ss_pred CC
Q 030175 81 DS 82 (182)
Q Consensus 81 ~~ 82 (182)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 150
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=8e-18 Score=113.27 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=60.2
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCc--cCCcEEEEEEe
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~--~~g~~l~V~~a 77 (182)
...+..+|||+|| |+++++++|+++|++||+|..|.|+ +|||||+|.+.++|++ |++.. +.|..|.|.+|
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 4567899999999 8999999999999999999999994 7999999999999984 45544 46999999999
Q ss_pred ecCC
Q 030175 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8654
No 151
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=4.4e-18 Score=113.27 Aligned_cols=71 Identities=28% Similarity=0.504 Sum_probs=65.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccC----C-------ceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G-------~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
..+.++|||+|| |+.+++++|+++|.+| | .|..+.+. +|||||+|.+.++|++|| .|||..|.|+
T Consensus 3 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 3 LGSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp SGGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 456789999999 8999999999999999 8 89999884 899999999999999999 9999999999
Q ss_pred EEEEEE
Q 030175 71 VISVEY 76 (182)
Q Consensus 71 ~l~V~~ 76 (182)
.|.|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999873
No 152
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=119.57 Aligned_cols=70 Identities=21% Similarity=0.344 Sum_probs=64.8
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
..+|||+|| |+.+++++|+++|++| .|..|.| .+|||||+|.+.++|++|| .||+..|.|+.|.|..+..
T Consensus 16 ~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 468999999 9999999999999999 8999988 3799999999999999999 5999999999999988864
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=120.17 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCc---eEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~---i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
+.....+|||+|| |+.+++++|+++|.+||. |..|.| .+|||||+|.+.++|++||+ ||+..|.|+.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4557889999999 899999999999999998 888888 36899999999999999999 99999999999
Q ss_pred EEEEeecC
Q 030175 73 SVEYALKD 80 (182)
Q Consensus 73 ~V~~a~~~ 80 (182)
.|.++.+.
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998753
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.5e-17 Score=128.57 Aligned_cols=76 Identities=21% Similarity=0.466 Sum_probs=68.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..|.++|||+|| |+.+++++|+++|++||+|..|.|+ +|||||+|.+.++|++||+.||+..+.|+.|.|.
T Consensus 12 ~~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 456789999999 8999999999999999999999883 5799999999999999999999999999999999
Q ss_pred EeecC
Q 030175 76 YALKD 80 (182)
Q Consensus 76 ~a~~~ 80 (182)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98654
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2e-17 Score=127.82 Aligned_cols=74 Identities=27% Similarity=0.479 Sum_probs=69.3
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
...+|||+|| |+.+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4578999999 899999999999999999999988 378999999999999999999999999999999999975
Q ss_pred C
Q 030175 80 D 80 (182)
Q Consensus 80 ~ 80 (182)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 156
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=3.8e-18 Score=110.63 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=62.4
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999 8999999999999999999999882 6899999999999999998 5999999999999875
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=3.7e-17 Score=120.62 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=69.9
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
++++|||+|| |..+++++|+++|++||+|..|.| .+|||||+|.+.++|++|++.|+|..|.|..|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 6789999999 889999999999999999999988 2589999999999999999999999999999999999
Q ss_pred ecCC
Q 030175 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
.+..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8654
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.9e-17 Score=119.96 Aligned_cols=74 Identities=23% Similarity=0.471 Sum_probs=69.0
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+..+|||+|| |..+++++|+++|++||.|..+.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 84 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 456789999999 8899999999999999999999883 5799999999999999999999999999999999
Q ss_pred Eee
Q 030175 76 YAL 78 (182)
Q Consensus 76 ~a~ 78 (182)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 159
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=1.7e-17 Score=130.70 Aligned_cols=77 Identities=27% Similarity=0.353 Sum_probs=69.0
Q ss_pred CCCCCEEEEccCCCCCC---------CHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCcc-----
Q 030175 4 QRPTKTLFVINFDPIRT---------RERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL----- 67 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~---------~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~----- 67 (182)
...+++|||+|| +..+ ++++|.++|++||+|..|.| .+|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 456889999999 7777 69999999999999999988 489999999999999999999999999
Q ss_pred -------CCcEEEEEEeecCC
Q 030175 68 -------VDRVISVEYALKDD 81 (182)
Q Consensus 68 -------~g~~l~V~~a~~~~ 81 (182)
.|..|.|.||+...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 160
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=6.3e-17 Score=124.09 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=71.2
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 45689999999 8899999999999999999999883 67999999999999999999999999999999999
Q ss_pred eecCCC
Q 030175 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
+.++..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 987643
No 161
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=2.5e-17 Score=117.88 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=66.1
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceE--EEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--HVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~--~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
+.....+|||+|| |+.+++++|+++|++| .|+ .|.| .+|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 3456789999999 8999999999999999 576 7877 37999999999999999998 478999999999
Q ss_pred EEEeecC
Q 030175 74 VEYALKD 80 (182)
Q Consensus 74 V~~a~~~ 80 (182)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=118.84 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCce----EEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i----~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
.+..+|||+|| |+.+++++|+++|++||.| ..|.| .+|||||+|.+.++|++||+. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 46789999999 9999999999999999975 46666 368999999999999999985 99999999999
Q ss_pred EEEeecC
Q 030175 74 VEYALKD 80 (182)
Q Consensus 74 V~~a~~~ 80 (182)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 163
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=5.9e-17 Score=119.11 Aligned_cols=75 Identities=20% Similarity=0.409 Sum_probs=69.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|.|..|.|.++
T Consensus 1 s~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 4689999999 8899999999999999999999883 389999999999999999999999999999999999
Q ss_pred ecCC
Q 030175 78 LKDD 81 (182)
Q Consensus 78 ~~~~ 81 (182)
.+..
T Consensus 80 ~~~~ 83 (167)
T 1fxl_A 80 RPSS 83 (167)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7553
No 164
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.2e-17 Score=114.62 Aligned_cols=75 Identities=24% Similarity=0.463 Sum_probs=68.1
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.+.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+ ++..|.|..|.|.++
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 35689999999 8999999999999999999999883 5899999999999999998 999999999999999
Q ss_pred ecCCC
Q 030175 78 LKDDS 82 (182)
Q Consensus 78 ~~~~~ 82 (182)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 86643
No 165
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=110.52 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCCCCCEEEEccCCCCCCC-----------HHHHHHhhccCCceEEEEEe----CCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030175 3 NQRPTKTLFVINFDPIRTR-----------ERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~-----------e~~L~~~F~~~G~i~~~~i~----~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
.+.++++|+|.|| ..... +++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4567999999999 43332 57999999999999999873 79999999999999999999999999
Q ss_pred CCcEEEEEEeecCC
Q 030175 68 VDRVISVEYALKDD 81 (182)
Q Consensus 68 ~g~~l~V~~a~~~~ 81 (182)
.|+.|.|+++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999997654
No 166
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=9.4e-17 Score=128.42 Aligned_cols=74 Identities=24% Similarity=0.457 Sum_probs=69.3
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccC-CcEEEEEEee
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYAL 78 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a~ 78 (182)
..++++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|. |+.|+|+|++
T Consensus 204 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 446789999999 8899999999999999999999983 489999999999999999999999999 9999999986
No 167
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.2e-16 Score=127.81 Aligned_cols=78 Identities=28% Similarity=0.546 Sum_probs=71.9
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHH----HhhccCCceEEEEEe-----CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~i~-----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
+..++++|||+|| |+.+++++|+ ++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 5 ~~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 5678999999999 8999999966 899999999999984 59999999999999999999999999999999
Q ss_pred EEEeecCC
Q 030175 74 VEYALKDD 81 (182)
Q Consensus 74 V~~a~~~~ 81 (182)
|++++...
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997654
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=8.2e-17 Score=121.88 Aligned_cols=77 Identities=16% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 56799999999 8899999999999999999999883 67999999999999999999999999999999999
Q ss_pred eecCCC
Q 030175 77 ALKDDS 82 (182)
Q Consensus 77 a~~~~~ 82 (182)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=9.6e-17 Score=121.30 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=66.5
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
.+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 102 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 35689999999 8999999999999999999999883 67999999999999999986 89999999999999
Q ss_pred eecCCCC
Q 030175 77 ALKDDSE 83 (182)
Q Consensus 77 a~~~~~~ 83 (182)
|.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9877544
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=6.4e-17 Score=126.25 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=71.3
Q ss_pred CCCCCEEEEccCCCC-CCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 4 QRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
.+++++|||+|| |. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.++..
T Consensus 31 ~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 31 GAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 457899999999 88 89999999999999999999995 79999999999999999999999999999999999976
Q ss_pred C
Q 030175 80 D 80 (182)
Q Consensus 80 ~ 80 (182)
.
T Consensus 110 ~ 110 (229)
T 2adc_A 110 Q 110 (229)
T ss_dssp C
T ss_pred c
Confidence 5
No 171
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.9e-17 Score=112.72 Aligned_cols=71 Identities=15% Similarity=0.336 Sum_probs=59.1
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-----------CCEEEEEeCCHHHHHHHHHhcCCCccCCcE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRV 71 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 71 (182)
.....++|||+|| |+.+++++|+++|++||+|. +.++ +|||||+|.+.++|++||+.|+ .++|..
T Consensus 4 ~~~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~ 79 (114)
T 2dnl_A 4 GSSGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKL 79 (114)
T ss_dssp SSSCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEE
T ss_pred CCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcE
Confidence 4567899999999 89999999999999999999 6551 6899999999999999999983 255555
Q ss_pred EEEEEe
Q 030175 72 ISVEYA 77 (182)
Q Consensus 72 l~V~~a 77 (182)
|.+..+
T Consensus 80 ~~~~~~ 85 (114)
T 2dnl_A 80 YLCVSS 85 (114)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 555443
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-16 Score=117.14 Aligned_cols=73 Identities=22% Similarity=0.476 Sum_probs=68.1
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|.|..|.|.++...
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 58999999 8999999999999999999999883 589999999999999999999999999999999999765
Q ss_pred C
Q 030175 81 D 81 (182)
Q Consensus 81 ~ 81 (182)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1.2e-16 Score=118.33 Aligned_cols=72 Identities=17% Similarity=0.345 Sum_probs=67.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
....+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|++
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34689999999 8899999999999999999999882 57999999999999999999999999999999999
Q ss_pred e
Q 030175 77 A 77 (182)
Q Consensus 77 a 77 (182)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=1.7e-16 Score=118.18 Aligned_cols=75 Identities=24% Similarity=0.427 Sum_probs=68.4
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
.+..+|||+|| |..+++++|+++|++||.|..+.. .+|||||+|.+.++|++||+.|||..|.|+.|.|.||.++
T Consensus 97 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 35689999999 889999999999999999988722 4799999999999999999999999999999999999764
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=1.9e-16 Score=119.64 Aligned_cols=77 Identities=25% Similarity=0.499 Sum_probs=68.6
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
++.+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+. ++..|.|..|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 4456789999999 8999999999999999999999883 57999999999999999985 999999999999
Q ss_pred EEeecCC
Q 030175 75 EYALKDD 81 (182)
Q Consensus 75 ~~a~~~~ 81 (182)
.++....
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987543
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.1e-16 Score=118.11 Aligned_cols=73 Identities=19% Similarity=0.428 Sum_probs=67.5
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++ |++..|.|+.|.|.+|
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3568999999 8899999999999999999999883 5799999999999999998 8999999999999999
Q ss_pred ecC
Q 030175 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
.++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=3.1e-16 Score=122.37 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=70.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccC-CcEEEEEEeec
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYALK 79 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a~~ 79 (182)
.++.+|||+|| |..+++++|+++|.+|| .|..|.| .+|||||+|.+.++|++||+.|||..|. |+.|.|.|+++
T Consensus 149 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 149 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 45789999999 88999999999999999 9999998 5799999999999999999999999999 99999999976
Q ss_pred C
Q 030175 80 D 80 (182)
Q Consensus 80 ~ 80 (182)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=2e-16 Score=120.22 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=70.4
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccC-CcEEEEEEeec
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYALK 79 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a~~ 79 (182)
+++.+|||+|| |..+++++|+++|++|| .|..|.| .+|||||+|.+.++|++||+.|||..|. |+.|.|.|+++
T Consensus 118 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 45889999999 88999999999999999 9999998 4799999999999999999999999999 99999999976
Q ss_pred C
Q 030175 80 D 80 (182)
Q Consensus 80 ~ 80 (182)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=4.3e-16 Score=114.83 Aligned_cols=73 Identities=26% Similarity=0.460 Sum_probs=67.2
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCC--cEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVD--RVIS 73 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~ 73 (182)
..+..+|||+|| |..+++++|+++|++||.|..+.|. +|||||+|.+.++|++|++.|||..|.| ..|.
T Consensus 86 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 346789999999 8899999999999999999999883 4799999999999999999999999988 9999
Q ss_pred EEEe
Q 030175 74 VEYA 77 (182)
Q Consensus 74 V~~a 77 (182)
|.||
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=4.1e-16 Score=108.14 Aligned_cols=76 Identities=26% Similarity=0.276 Sum_probs=66.5
Q ss_pred CCCCCEEEEccCC-CC---CCCHHHHHHhhccCCceEEEEEe---------CCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 030175 4 QRPTKTLFVINFD-PI---RTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDR 70 (182)
Q Consensus 4 ~~~~~~l~V~nL~-p~---~~~e~~L~~~F~~~G~i~~~~i~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 70 (182)
..++++|+|.||. |. ..++++|+++|++||+|..|.|+ +|||||+|.+.++|++|++.|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4678999999992 11 23689999999999999999883 58999999999999999999999999999
Q ss_pred EEEEEEeec
Q 030175 71 VISVEYALK 79 (182)
Q Consensus 71 ~l~V~~a~~ 79 (182)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.1e-16 Score=116.17 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=66.4
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccC---CcEEEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLV---DRVISV 74 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V 74 (182)
.+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..+. ++.|.|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 36789999999 8899999999999999999999883 679999999999999999999998775 489999
Q ss_pred EEee
Q 030175 75 EYAL 78 (182)
Q Consensus 75 ~~a~ 78 (182)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=120.29 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=70.0
Q ss_pred CCCEEEEccCCCC-CCCHHHHHHhhccCCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecCC
Q 030175 6 PTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (182)
Q Consensus 6 ~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 81 (182)
.+++|||+|| |. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.++....
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 3689999999 88 89999999999999999999984 7999999999999999999999999999999999998653
No 183
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=4e-16 Score=119.56 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=67.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+.++|||+|| |..+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 27 ~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3579999999 889999999999999999999998 3789999999999999999999999999999999887
Q ss_pred ecC
Q 030175 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=7.3e-16 Score=113.23 Aligned_cols=72 Identities=25% Similarity=0.532 Sum_probs=65.5
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcE--EEE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRV--ISV 74 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~--l~V 74 (182)
.+..+|||+|| |..+++++|+++|++||.|..+.|. +|||||+|.+.++|++|++.|||..|.|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 35689999999 8899999999999999999999882 689999999999999999999999999964 888
Q ss_pred EEe
Q 030175 75 EYA 77 (182)
Q Consensus 75 ~~a 77 (182)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=5e-16 Score=123.47 Aligned_cols=74 Identities=34% Similarity=0.499 Sum_probs=69.3
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
.+.++|||+|| |..+++++|.++|++||.|..|.|. +|||||+|.+.++|++||..|||..|.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 44679999999 8999999999999999999999984 89999999999999999999999999999999999864
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=9.8e-16 Score=117.10 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=64.6
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
.++|||+|| |+.+++++|+++|++||+|..|.|. +|||||+|++.++|++||+.+ +..|.|+.|.|.+++.
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 478999999 8999999999999999999999883 689999999999999999865 5699999999998764
No 187
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=1.2e-15 Score=126.03 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=66.1
Q ss_pred CCCCCCEEEEcc--CCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccC---Cc--EEE
Q 030175 3 NQRPTKTLFVIN--FDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLV---DR--VIS 73 (182)
Q Consensus 3 ~~~~~~~l~V~n--L~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~--~l~ 73 (182)
..+|+.+|||+| | ++.+++++|+++|++||+|..|.| .+|||||+|++.++|++||+.|||.++. |+ .|.
T Consensus 14 ~~~ps~~l~VgN~gl-~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSG-GGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 467899999999 6 688999999999999999999988 5899999999999999999999999873 44 567
Q ss_pred EEEee
Q 030175 74 VEYAL 78 (182)
Q Consensus 74 V~~a~ 78 (182)
|.++.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 77764
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.9e-15 Score=111.97 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=66.3
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe----------CCEEEEEeCCHHHHHHHHHhcCCCccC---CcEE
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLV---DRVI 72 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~----------~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l 72 (182)
+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..+. +..|
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 5679999999 8999999999999999999999872 479999999999999999999998875 6778
Q ss_pred EEEEeecCC
Q 030175 73 SVEYALKDD 81 (182)
Q Consensus 73 ~V~~a~~~~ 81 (182)
.|.++....
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888776543
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.4e-15 Score=112.60 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=67.1
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccC----C-------ceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRV 71 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G-------~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 71 (182)
.+.++|||+|| |..+++++|+++|++| | .|..+.+ .+|||||+|.+.++|++|| .||+..|.|+.
T Consensus 2 r~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 35789999999 8999999999999999 6 7777777 4899999999999999999 89999999999
Q ss_pred EEEEEeecC
Q 030175 72 ISVEYALKD 80 (182)
Q Consensus 72 l~V~~a~~~ 80 (182)
|.|.++...
T Consensus 80 i~v~~~~~~ 88 (172)
T 2g4b_A 80 LKIRRPHDY 88 (172)
T ss_dssp CEEECCSSC
T ss_pred eeecCCccc
Confidence 999987654
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=9.1e-16 Score=118.26 Aligned_cols=72 Identities=13% Similarity=0.296 Sum_probs=64.7
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCce--EEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCc----EE
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNV--LHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR----VI 72 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i--~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~----~l 72 (182)
+++.+|||+|| |+.+++++|+++|++||.| ..|.|. +|||||+|.+.++|++||..|||.+|.|. +|
T Consensus 121 ~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999 8999999999999999998 788872 47999999999999999999999999876 67
Q ss_pred EEEEe
Q 030175 73 SVEYA 77 (182)
Q Consensus 73 ~V~~a 77 (182)
.|.+|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77776
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=1.8e-15 Score=114.43 Aligned_cols=74 Identities=27% Similarity=0.467 Sum_probs=66.4
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccC----C-------ceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~----G-------~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
..++|||+|| |+.+++++|+++|++| | .|..+.+ .+|||||+|.+.++|++|| .|||..|.|+.|
T Consensus 3 ~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 5789999999 8999999999999999 5 6777776 4899999999999999999 799999999999
Q ss_pred EEEEeecCC
Q 030175 73 SVEYALKDD 81 (182)
Q Consensus 73 ~V~~a~~~~ 81 (182)
.|.++....
T Consensus 81 ~v~~~~~~~ 89 (198)
T 2yh0_A 81 KIRRPHDYQ 89 (198)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987653
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=3.2e-16 Score=116.62 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=67.0
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
++.+.++|||+|| |..+++++|+++|.+||.|..+.| .+|||||+|.+.++|++||+ |||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567899999999 899999999999999986544222 47999999999999999995 99999999999999
Q ss_pred EeecCC
Q 030175 76 YALKDD 81 (182)
Q Consensus 76 ~a~~~~ 81 (182)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 997653
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.5e-15 Score=120.67 Aligned_cols=75 Identities=29% Similarity=0.451 Sum_probs=69.6
Q ss_pred CCCCCEEEEccCCCCC-CCHHHHHHhhccCCceEEEEEe---------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 030175 4 QRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~i~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 73 (182)
..+..+|||+|| |.. +++++|+++|++||.|..|.|. +|||||+|.+.++|++|| .|||..|.|+.|.
T Consensus 207 ~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 456789999999 889 9999999999999999999883 579999999999999999 9999999999999
Q ss_pred EEEeecC
Q 030175 74 VEYALKD 80 (182)
Q Consensus 74 V~~a~~~ 80 (182)
|.||.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 194
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=3.2e-15 Score=119.56 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCCCCEEEEccCCCCCC-CHHHHHHhhccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDPIRT-RERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~-~e~~L~~~F~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
..+..+|||+|| |..+ ++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 181 ~~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 346789999999 8884 999999999999999999872 6899999999999999999999999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
++.++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987643
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=2.1e-15 Score=111.08 Aligned_cols=71 Identities=24% Similarity=0.466 Sum_probs=64.1
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe--------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
++++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+. +..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 5689999999 8999999999999999999999983 58999999999999999984 57889999998887
Q ss_pred ec
Q 030175 78 LK 79 (182)
Q Consensus 78 ~~ 79 (182)
.+
T Consensus 79 ~~ 80 (167)
T 2cjk_A 79 IP 80 (167)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 196
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=98.74 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=62.4
Q ss_pred CCCEEEEccCC------CCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 6 PTKTLFVINFD------PIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 6 ~~~~l~V~nL~------p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
....|.|.-.. ...+++++|+++|++||+|..|.| .+|||||+|.+.++|+.||+.+++ +.|+.|.|+|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~ 86 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISW 86 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEEC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEE
Confidence 35567675431 135899999999999999999998 479999999999999999998655 6799999999
Q ss_pred eecCCCC
Q 030175 77 ALKDDSE 83 (182)
Q Consensus 77 a~~~~~~ 83 (182)
++.+...
T Consensus 87 a~~~~~~ 93 (100)
T 2d9o_A 87 LEGQPQD 93 (100)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=6.3e-15 Score=117.85 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=66.9
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
+.++|||+|| |..+++++|+++|.+|| |..|.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|+++.
T Consensus 21 ~~~~l~V~nL-p~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGL-PGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 5789999999 89999999999999999 999988 47999999999999999999999999999999999865
No 198
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.2e-15 Score=106.55 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=61.7
Q ss_pred CEEEEccC----CCCCCCHHHHHHhhccCCceEEEEE--------eCCEEEEEeCC----HHH----HHHHHH--hcCCC
Q 030175 8 KTLFVINF----DPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFET----QEE----ATKALE--STDRS 65 (182)
Q Consensus 8 ~~l~V~nL----~p~~~~e~~L~~~F~~~G~i~~~~i--------~~g~afV~f~~----~~~----a~~Ai~--~l~g~ 65 (182)
.+|||+|| + +.|++++|+++|++||+|..|.+ ++|||||+|.+ +++ |.+||+ .|||.
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 6 68999999999999999999988 58999999996 333 888988 78999
Q ss_pred ccCCcEEEEEEee
Q 030175 66 KLVDRVISVEYAL 78 (182)
Q Consensus 66 ~~~g~~l~V~~a~ 78 (182)
.|.|+.|+|.+..
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999865
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1e-14 Score=101.04 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=65.1
Q ss_pred CCCCEEEEccC-CCCCCC--------HHHHHHhhccCCceEEEEEe----------CCEEEEEeCCHHHHHHHHHhcCCC
Q 030175 5 RPTKTLFVINF-DPIRTR--------ERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 5 ~~~~~l~V~nL-~p~~~~--------e~~L~~~F~~~G~i~~~~i~----------~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
.|+++|+|.|+ ++..+. +++|+++|++||+|..|.|+ +|||||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999997 222332 36899999999999999983 589999999999999999999999
Q ss_pred ccCCcEEEEEEeec
Q 030175 66 KLVDRVISVEYALK 79 (182)
Q Consensus 66 ~~~g~~l~V~~a~~ 79 (182)
.|.|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=7.8e-15 Score=117.75 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=65.1
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+ ||+..|.|+.|.|.++
T Consensus 38 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNL-PKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEE-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 456889999999 8999999999999999999999883 6899999999999999995 9999999999999987
Q ss_pred e
Q 030175 78 L 78 (182)
Q Consensus 78 ~ 78 (182)
.
T Consensus 116 ~ 116 (292)
T 2ghp_A 116 T 116 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 201
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=2.9e-14 Score=100.22 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=65.2
Q ss_pred CCCCCCEEEEccCC-CCCC--------CHHHHHHhhccCCceEEEEEe----CCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030175 3 NQRPTKTLFVINFD-PIRT--------RERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 3 ~~~~~~~l~V~nL~-p~~~--------~e~~L~~~F~~~G~i~~~~i~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
.+.++++|.|.|+- +... .+++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|+|
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45688999999972 2211 135789999999999999983 6999999999999999999999999999
Q ss_pred cEEEEEEee
Q 030175 70 RVISVEYAL 78 (182)
Q Consensus 70 ~~l~V~~a~ 78 (182)
+.|.|+++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999986
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=4.3e-14 Score=99.90 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCCCEEEEccCC-CCC---CCHHHHHHhhccCCceEEEEEe------------CCEEEEEeCCHHHHHHHHHhcCCCccC
Q 030175 5 RPTKTLFVINFD-PIR---TRERDIKRHFEPYGNVLHVRIR------------RNFAFVQFETQEEATKALESTDRSKLV 68 (182)
Q Consensus 5 ~~~~~l~V~nL~-p~~---~~e~~L~~~F~~~G~i~~~~i~------------~g~afV~f~~~~~a~~Ai~~l~g~~~~ 68 (182)
+++++|+|.|+- |.+ -.+++|+++|++||+|..|.|+ +||+||+|.+.++|++|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 478999999972 222 2368999999999999999882 279999999999999999999999999
Q ss_pred CcEEEEEEeec
Q 030175 69 DRVISVEYALK 79 (182)
Q Consensus 69 g~~l~V~~a~~ 79 (182)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=3.9e-15 Score=102.95 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=54.6
Q ss_pred EccCCCCCCCHHHHHHhh------------ccCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 030175 12 VINFDPIRTRERDIKRHF------------EPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (182)
Q Consensus 12 V~nL~p~~~~e~~L~~~F------------~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 72 (182)
+.|| ++.+++++|.++| ++||+|..|.|+ +|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 3444 4445666666555 999999999993 7899999999999999999999999999999
Q ss_pred EEEEe
Q 030175 73 SVEYA 77 (182)
Q Consensus 73 ~V~~a 77 (182)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=3.1e-14 Score=113.09 Aligned_cols=75 Identities=25% Similarity=0.289 Sum_probs=66.3
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE-------eCCEEEEEeCCHHHHHHHHHhcCCC-ccC---CcEEEE
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRS-KLV---DRVISV 74 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i-------~~g~afV~f~~~~~a~~Ai~~l~g~-~~~---g~~l~V 74 (182)
+..+|||+|| |..+++++|+++|.+||.|..|.| .+|||||+|.+.++|++||..||+. .+. ++.|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5679999999 889999999999999999999988 3789999999999999999999554 443 899999
Q ss_pred EEeecCC
Q 030175 75 EYALKDD 81 (182)
Q Consensus 75 ~~a~~~~ 81 (182)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9997543
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.6e-13 Score=96.03 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEccCCCCC-CCHHHHHHhhccCCceEEEEEeC--CEEEEEeCC-HHHHHHHHHhcC--CCccCCcEEEEE
Q 030175 2 ANQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRR--NFAFVQFET-QEEATKALESTD--RSKLVDRVISVE 75 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~i~~--g~afV~f~~-~~~a~~Ai~~l~--g~~~~g~~l~V~ 75 (182)
...++++.|||+|| +.. +++++|+++|++||+|..|.|.. ..|||.|.+ ..+|++|+++|| +.+|+|..+.++
T Consensus 13 ~~~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 13 LEEKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CSCCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 35678999999999 778 99999999999999999999964 489999999 899999999995 688999999998
Q ss_pred Eee
Q 030175 76 YAL 78 (182)
Q Consensus 76 ~a~ 78 (182)
+..
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=8.1e-13 Score=88.38 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCCCCEEEEccCCC----CCC-CH---HHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 030175 4 QRPTKTLFVINFDP----IRT-RE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 4 ~~~~~~l~V~nL~p----~~~-~e---~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
-+|..||+|.-+ + .+. .+ .+|.+.|.+||+|..+.|..+.+||+|.+.++|.+||+ |||.+|+|+.|+|+
T Consensus 4 GPpd~tv~V~~~-~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 4 GSSGGTVLVSIK-SSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CCSSCEEEEEEE-CSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCCeEEEEec-cCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 356778888776 3 122 21 57999999999999999998999999999999999998 99999999999999
Q ss_pred EeecCCC
Q 030175 76 YALKDDS 82 (182)
Q Consensus 76 ~a~~~~~ 82 (182)
++.+...
T Consensus 82 lkt~dW~ 88 (91)
T 2dnr_A 82 LKSPSGP 88 (91)
T ss_dssp ECCCSSC
T ss_pred eCCCCcc
Confidence 9986543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.2e-11 Score=81.84 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=61.7
Q ss_pred CCCCCEEEEccCCCCC------CCH---HHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 4 QRPTKTLFVINFDPIR------TRE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~------~~e---~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
-+|..||+|..+ +.. ..+ .+|.+.|.+||+|..+.|...-+||+|.+.++|.+||+ |||.+|+|+.|+|
T Consensus 12 GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 12 GPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 357789999887 421 221 46999999999999999988889999999999999998 9999999999999
Q ss_pred EEe
Q 030175 75 EYA 77 (182)
Q Consensus 75 ~~a 77 (182)
++-
T Consensus 90 ~~k 92 (95)
T 1ufw_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred ecc
Confidence 874
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.4e-09 Score=84.07 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=53.6
Q ss_pred CHHHHHHhhccCCceEEEEEe------------CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 21 RERDIKRHFEPYGNVLHVRIR------------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~i~------------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
.+++|.+.|++||+|..+.|. +|++||+|.+.++|++||+.|||..|.|+.|.|.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999883 4799999999999999999999999999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=2e-08 Score=68.92 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccC-----CceEEEEEe--CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEE
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPY-----GNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~-----G~i~~~~i~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 76 (182)
..++|-|-|| |..++...|..+++++ |.|..|.|. -+-|+|+|.+...|-+|.-+|+|.+|.|+.|+|.-
T Consensus 20 ~~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4788999999 9999999999999999 999999884 57899999999999999999999999999999853
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=3e-07 Score=62.65 Aligned_cols=74 Identities=9% Similarity=0.118 Sum_probs=61.2
Q ss_pred CCCEEEEccCCCCCC-C----HHHHHHhhccCCceEEEEEeCC--EEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 6 PTKTLFVINFDPIRT-R----ERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~-~----e~~L~~~F~~~G~i~~~~i~~g--~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
-.++|+|+||+ ..+ . .+.++++|..|+++....+.+. =..|.|.+.++|.+|-..||+..|.|..|+|.++.
T Consensus 4 ~pntLiitnl~-~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 4 GSSGLIACVAN-DDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCCEEEEECCC-GGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCceEEEecCC-HHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 45689999994 333 3 2578999999998877776544 47899999999999999999999999999999998
Q ss_pred cC
Q 030175 79 KD 80 (182)
Q Consensus 79 ~~ 80 (182)
+.
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=7.6e-06 Score=55.54 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=63.6
Q ss_pred CCCCCCEEEEccCCCCCCCHHHHHHhhccC-----CceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPY-----GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~-----G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
.....++|.|.|| |..+.++.|+-+|++- |+|..+....+-|+|+|.+.+.|+..|+. ..+.|.+..|.|...
T Consensus 4 ~~~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 4 GSSGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp SCCCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred CccCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 3456789999999 7899999999999872 58999988779999999999999999873 578889999999765
Q ss_pred ecC
Q 030175 78 LKD 80 (182)
Q Consensus 78 ~~~ 80 (182)
.+.
T Consensus 82 ~~~ 84 (104)
T 2dhx_A 82 PPR 84 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=1.1e-05 Score=56.41 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=57.2
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCC-cEEEEEEe
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYA 77 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a 77 (182)
.....|.|-++ |. .....|...|++||+|++... ...+-.|.|.+..+|++||. .||..|.| --|-|...
T Consensus 22 ~~~~wVtVFGF-p~-~~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGF-PQ-ASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECC-CG-GGHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECC-CH-HHHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34678899999 54 457889999999999999887 45799999999999999997 59999975 44555553
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.03 E-value=2.3e-05 Score=52.65 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=47.7
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcC
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
...++| ++ |.++...||.++|..||.|.--+|.---|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~F-P~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-EC-CTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eC-ChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 456666 99 88999999999999999777667788899999999999999998763
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=0.00015 Score=48.25 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=56.4
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe----------CCEEEEEeCCHHHHHHHHHhcCCCccC---Cc--EE
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLV---DR--VI 72 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~----------~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~--~l 72 (182)
++|.|.+| |..+||+++.+.+..+.++...... -.-|+|.|.+.+++....+.++|+.|. |. ..
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 57999999 7899999999999998876655542 236999999999999999999999883 22 33
Q ss_pred EEEEeec
Q 030175 73 SVEYALK 79 (182)
Q Consensus 73 ~V~~a~~ 79 (182)
.|++|.-
T Consensus 81 ~VE~AP~ 87 (91)
T 1uw4_A 81 IVEFAPF 87 (91)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 4666643
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.77 E-value=3e-05 Score=52.17 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=46.7
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcC
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
..++| ++ |.++...||.++|..||.|.--+|.---|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~F-P~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC-CTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC-ChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 45566 99 88999999999999999766667788899999999999999998764
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.57 E-value=0.00012 Score=51.80 Aligned_cols=71 Identities=14% Similarity=0.306 Sum_probs=55.0
Q ss_pred CCCCEEEEccCCCCCCCHHHHHHhhccCCceEE-EEE---------------------eCCEEEEEeCCHHHHHHHHHhc
Q 030175 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI---------------------RRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-~~i---------------------~~g~afV~f~~~~~a~~Ai~~l 62 (182)
.....|.|-+. |. .....+.+.|++||.|++ +.+ ..++..|+|++..+|++||. .
T Consensus 5 ~~e~~VtVFGF-p~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 5 NGELAILVFGY-PE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp ---CEEEEECC-CG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred cCceEEEEEec-CH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 34567889999 64 456778889999999977 211 24678999999999999997 5
Q ss_pred CCCccCCcEEEEEEee
Q 030175 63 DRSKLVDRVISVEYAL 78 (182)
Q Consensus 63 ~g~~~~g~~l~V~~a~ 78 (182)
||.+|.|.-|-|....
T Consensus 82 NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCeEeCcEEEEEEECC
Confidence 9999999877777654
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.17 E-value=0.0011 Score=44.49 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=53.1
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEe----------CCEEEEEeCCHHHHHHHHHhcCCCccCC---c--E
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLVD---R--V 71 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~----------~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~--~ 71 (182)
+-+|.|..| |..+||+++.+.+..+-++...... -.-|+|.|.+.+++....+.++|..|.+ . .
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 567999999 7799999998888876444322221 2358999999999999999999988732 2 4
Q ss_pred EEEEEee
Q 030175 72 ISVEYAL 78 (182)
Q Consensus 72 l~V~~a~ 78 (182)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566664
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.70 E-value=0.00063 Score=57.95 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=39.5
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE---eCCEEEEEeCCHHHHHHHHHh
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~ 61 (182)
.+.|||. . +..+++.+|.+.|++||.|..+.+ ...||+|||.+.++|+.++..
T Consensus 53 ~rsv~v~-~-~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-C-PEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-E-CCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-c-CCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4689997 6 568999999999999999999988 345999999999999977653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.31 E-value=0.0007 Score=48.50 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=34.8
Q ss_pred eCCEEEEEeCCHHHHHHHHHhc-CCCccCCcEEEEEEeec
Q 030175 41 RRNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYALK 79 (182)
Q Consensus 41 ~~g~afV~f~~~~~a~~Ai~~l-~g~~~~g~~l~V~~a~~ 79 (182)
.+|+++|+|.+.++|++|++.| ||..|+| .|.|.++..
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4789999999999999999999 9999999 999988764
No 220
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=96.04 E-value=0.011 Score=37.31 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=47.5
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCC-----ceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYG-----NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G-----~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
+|||..--...+...+|..++..-+ .|-.|.|...|+||+... ..|+.+++.|++..+.|..+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5666432134677778888877544 467788889999999985 56888999999999999999998764
No 221
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.45 E-value=0.006 Score=43.72 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=22.7
Q ss_pred eCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030175 41 RRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 41 ~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
.+|||||+|.+.++|++|++.+++..
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccC
Confidence 47999999999999999998887643
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.31 E-value=0.046 Score=47.07 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=47.4
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCC
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
...++|+ + |..+...+|.++|+.||.|.-.+|....|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f-~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-F-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-C-CTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-C-CCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 4566776 7 667889999999999997766677888999999999999999998853
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=92.59 E-value=1.2 Score=29.28 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=47.9
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcC
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
...++-|-|-|+ |..+-..++.-...-.|---.|....|.|.|.|.+.++...||+.|-
T Consensus 9 ikqnclikiini-pqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 9 IKQNCLIKIINI-PQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -CCSCEEEEECC-CTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHE
T ss_pred hhhCcEEEEEec-CCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHH
Confidence 456778889999 88888888776666777666777788999999999999999988763
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=84.49 E-value=5.8 Score=33.18 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 030175 52 QEEATKALE 60 (182)
Q Consensus 52 ~~~a~~Ai~ 60 (182)
.++...++.
T Consensus 116 e~~L~~~F~ 124 (437)
T 3pgw_S 116 ESKLRREFE 124 (437)
T ss_pred HHHHHHHHH
Confidence 334444443
No 225
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=80.03 E-value=0.38 Score=34.45 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHhhccCCceEEEEEeCCEEEEEeC
Q 030175 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFE 50 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g~afV~f~ 50 (182)
++||.++|...|.|+.....+||+||+..
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeC
Confidence 35677889999999998888999999976
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.97 E-value=4.6 Score=29.57 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=30.5
Q ss_pred EEEEccCCCC-C--------CCHHHHHHhh--ccCCceEEEEE-----eCCEEEEEeCCH
Q 030175 9 TLFVINFDPI-R--------TRERDIKRHF--EPYGNVLHVRI-----RRNFAFVQFETQ 52 (182)
Q Consensus 9 ~l~V~nL~p~-~--------~~e~~L~~~F--~~~G~i~~~~i-----~~g~afV~f~~~ 52 (182)
+++|-|+ |. . ...++|.+.| ..|.++.-..+ ..|+|+|+|.+-
T Consensus 14 mgIl~N~-~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNI-PTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECC-CCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEec-cccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 5677888 54 1 3347899977 89987665555 357899999954
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=74.58 E-value=8.8 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=26.0
Q ss_pred ceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCC
Q 030175 34 NVLHVRIR---RNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 34 ~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
+|..+.++ .||.||++...++...+|+.+.|.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 46666663 899999999999999999887774
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=72.58 E-value=7.3 Score=23.14 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHh
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~ 61 (182)
..+|.|.++ ....-...|+..+.+ ..|..+.+ ..+-+.|+|.+.+...++|+.
T Consensus 6 ~~~~~v~gm-~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGL-SCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESS-BCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCC-CCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 346888898 455566788999988 77777766 456778888866667777765
No 229
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=63.43 E-value=19 Score=20.62 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=38.4
Q ss_pred CCCCCCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHh
Q 030175 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (182)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~ 61 (182)
.+.....++.|.++ ....-...|+..+.+.-.|..+.+ ..+.+.|+|.. .+....+|..
T Consensus 2 ~~~~~~~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 66 (76)
T 1opz_A 2 LSEQKEIAMQVSGM-TCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66 (76)
T ss_dssp CCCCEEEEEEEESC-CSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred CccceEEEEEECCc-ccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444456888888 444445668888888766766655 56788888863 4555566654
No 230
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.71 E-value=4.2 Score=24.87 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.6
Q ss_pred CceEEEEEeCCEEEEEeCC
Q 030175 33 GNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~ 51 (182)
|.|+.|...+..|||.|++
T Consensus 28 GtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEecCCcEEEEEEcc
Confidence 6777777678899999986
No 231
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=61.46 E-value=22 Score=20.74 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=37.4
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHh
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALES 61 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~ 61 (182)
.++.|.|+ ....-...|+..+.+...|..+.+ ..+-+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGM-TCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECC-CSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCc-CCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888 343445678899988877766655 5788899985 45667777765
No 232
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=57.91 E-value=5.5 Score=25.02 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.5
Q ss_pred CceEEEEEeCCEEEEEeCCH
Q 030175 33 GNVLHVRIRRNFAFVQFETQ 52 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~~ 52 (182)
|.|++|...+..|||.|++.
T Consensus 45 GTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeccCCCEEEEEEcCC
Confidence 67888777788999999863
No 233
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=54.43 E-value=14 Score=21.18 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=36.1
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC---CHHHHHHHHHh
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE---TQEEATKALES 61 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~---~~~~a~~Ai~~ 61 (182)
.++.|.|+ ....-...|+..+.+...|..+.+ ..+-+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGM-DCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCe-ecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888 444445778899998877776665 5678888885 34455566654
No 234
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=52.09 E-value=8 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=14.3
Q ss_pred CceEEEEEeCCEEEEEeCC
Q 030175 33 GNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~ 51 (182)
|.|+.|....+.|+|.|.+
T Consensus 32 gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEccCCcEEEEEEcc
Confidence 4566665567999999986
No 235
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=51.40 E-value=50 Score=21.82 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHhh-ccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeecC
Q 030175 17 PIRTRERDIKRHF-EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (182)
Q Consensus 17 p~~~~e~~L~~~F-~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 80 (182)
+-.+.-++|.... ..||.-..+.....-+.|-..+.++.++||+.|+-.. .-+.|+|-+..++
T Consensus 25 ~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 25 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVING 88 (103)
T ss_dssp ESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECC
T ss_pred cCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCC
Confidence 4456777776554 4678777777777788999999999999999877542 2334566555444
No 236
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.26 E-value=3.6 Score=24.79 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=13.8
Q ss_pred CceEEEEEeCCEEEEEeCCH
Q 030175 33 GNVLHVRIRRNFAFVQFETQ 52 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~~ 52 (182)
|.|+.|...+..|||.|++.
T Consensus 26 gtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp EEECCCCSTTSEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEccC
Confidence 45555554578899999863
No 237
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=47.98 E-value=33 Score=18.80 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=34.1
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC---CHHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE---TQEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~---~~~~a~~Ai~~ 61 (182)
++.|.|+ ....-...|+..+.+...|..+.+ ..+.+.|+|. +.+...++|+.
T Consensus 4 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSI-TCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTC-SCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCc-ccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 4567777 333345678888888866776666 4678888886 34555556654
No 238
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=47.75 E-value=32 Score=28.11 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=41.1
Q ss_pred CEEEEccCCCCCC----CHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030175 8 KTLFVINFDPIRT----RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 8 ~~l~V~nL~p~~~----~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
..-+|||| ..-. ....+.++..+||.|..+.+. +.-+|...+.+.|+.++.. ++..+.+
T Consensus 15 ~lPliGnl-~~l~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~~k~il~~-~~~~f~~ 77 (494)
T 3swz_A 15 SLPLVGSL-PFLPRHGHMHNNFFKLQKKYGPIYSVRMG-TKTTVIVGHHQLAKEVLIK-KGKDFSG 77 (494)
T ss_dssp CCCEEEEE-SSCTTSSCHHHHHHHTHHHHCSEEEEEET-TEEEEEECSHHHHHHHHTT-TTTTTBB
T ss_pred CCCeEcch-HHhCCCCchhHHHHHHHHHcCCEEEEEeC-CCCEEEECCHHHHHHHHHh-CcHhhCC
Confidence 34579998 4321 136678888899999888873 4566778899999998854 4444443
No 239
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=46.55 E-value=44 Score=22.13 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=26.3
Q ss_pred ceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCc
Q 030175 34 NVLHVRI---RRNFAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 34 ~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
.|..+.. .+||-|||=....++..||+.+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4666655 48999999999999999998776543
No 240
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=45.52 E-value=41 Score=20.60 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=36.6
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHhc
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALEST 62 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~l 62 (182)
.+|.|.++ ....-...|+..+.+.-.|..+.+ ..+.+.|+|. +.+...++|+.+
T Consensus 5 ~~l~v~Gm-~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGM-HCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESC-CHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCc-CCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35677777 333334668888988877877666 5778889886 345566677654
No 241
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=43.49 E-value=42 Score=18.68 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=34.1
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC---HHHHHHHHHh
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET---QEEATKALES 61 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~---~~~a~~Ai~~ 61 (182)
.++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|.. .+....+|+.
T Consensus 5 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGM-RCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCc-ccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 35678888 333334668888888777777666 46788888874 3344455544
No 242
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=43.01 E-value=14 Score=30.10 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=35.1
Q ss_pred EEccCCCCC---CCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030175 11 FVINFDPIR---TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 11 ~V~nL~p~~---~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
+|||| ..- -....+.++..+||+|..+.|. +.-+|...+.+.++.++.. ++..+
T Consensus 20 ~iGn~-~~~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~i~~vl~~-~~~~f 76 (479)
T 3tbg_A 20 GLGNL-LHVDFQNTPYCFDQLRRRFGDVFSLQLA-WTPVVVLNGLAAVREALVT-HGEDT 76 (479)
T ss_dssp TTBTG-GGCCTTSHHHHHHHHHHHHCSEEEEEET-TEEEEEEEHHHHHHHHHTT-TGGGS
T ss_pred cccch-HhhcCCCHHHHHHHHHHHhCCEEEEEEC-CeeEEEECCHHHHHHHHHh-CChhh
Confidence 57886 321 1235577888899999888873 3445666778888877643 44333
No 243
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=42.08 E-value=45 Score=18.64 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=34.8
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHh
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~ 61 (182)
.+|.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|.. .+....+|..
T Consensus 7 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGM-SCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCc-cCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888 333334568888888766776666 46788888863 4555666654
No 244
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=41.98 E-value=15 Score=21.78 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=15.2
Q ss_pred CceEEEEEeCCEEEEEeCCH
Q 030175 33 GNVLHVRIRRNFAFVQFETQ 52 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~~ 52 (182)
|.|+.|......|+|.|.+.
T Consensus 22 GtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEcCC
Confidence 56777766677999999863
No 245
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=41.54 E-value=50 Score=19.00 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=36.1
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHhc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~l 62 (182)
+|.|.++ ....-...|+..+.+...|..+.+ ..+.+.|.|. +.+....+|..+
T Consensus 6 ~~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGM-TCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCG-GGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCe-eCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778888 444455778899988877776655 4677888886 344556666653
No 246
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=41.46 E-value=55 Score=19.44 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=37.5
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHhc
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALEST 62 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~l 62 (182)
.+|.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|. +.+....+|+.+
T Consensus 11 ~~~~v~gm-~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 11 LKMKVEGM-TCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEECCT-TTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCc-ccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888 344455678888988877877766 4678888885 345566666653
No 247
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=41.05 E-value=31 Score=22.19 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=35.2
Q ss_pred EEEccCCCCCCCHHHHHHhhcc-CCceEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 10 LFVINFDPIRTRERDIKRHFEP-YGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~-~G~i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
+.|..+ ..++|++|+.++.. || +..+.|. .----|...+..+.+.|++. ..-.|..|++.+.
T Consensus 20 f~vs~~--~~~tweel~~mvk~~f~-L~~~~ikY~DEenD~v~i~Sq~E~eEAlkv---a~k~~n~L~m~v~ 85 (87)
T 2bkf_A 20 FLVSDP--ENTTWADIEAMVKVSFD-LNTIQIKYLDEENEEVSINSQGEYEEALKM---AVKQGNQLQMQVH 85 (87)
T ss_dssp EEESCG--GGCCHHHHHHHHHHHHT-CSSEEEEEECTTSCEEEECSHHHHHHHHHH---HHHTTTEEEEEEE
T ss_pred EEeccC--CCCCHHHHHHHHHHHcC-CCceEEEEEcCCCCEEEEecHHHHHHHHHH---hccCCCEEEEEEe
Confidence 334444 37899999998864 44 3333331 11123555667777788763 1223556776654
No 248
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=40.91 E-value=45 Score=18.32 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=35.8
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~ 61 (182)
++.|.|+ ....-...|+..+.+...|..+.+ ..+.+.|+|.. .+....+|+.
T Consensus 3 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGM-SCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCC-CSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCe-eCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5788888 444455678888888766776665 46788888863 4555566654
No 249
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=39.53 E-value=81 Score=20.92 Aligned_cols=51 Identities=8% Similarity=0.178 Sum_probs=26.3
Q ss_pred EEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHh
Q 030175 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALES 61 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~ 61 (182)
|.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|. +.++..++|+.
T Consensus 78 ~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 134 (151)
T 1p6t_A 78 FDIEGM-TCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 134 (151)
T ss_dssp EEESSC-CSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEecCC-CCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555 233334555666665555544433 3556666665 34455555554
No 250
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=39.42 E-value=6.2 Score=27.05 Aligned_cols=27 Identities=4% Similarity=-0.063 Sum_probs=0.0
Q ss_pred CEEEEEeCCHHHHHHHHHhcCCCccCC
Q 030175 43 NFAFVQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 43 g~afV~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
.++|++|++...|..|+..|+|....|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ---------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCC
Confidence 367888888899999999888866544
No 251
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=38.86 E-value=25 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEE
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLH 37 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~ 37 (182)
...++|+|| |+.++..-|.+++.. ..+..
T Consensus 110 ~~~~iv~Nl-Py~iss~il~~ll~~-~~~~~ 138 (271)
T 3fut_A 110 QGSLLVANL-PYHIATPLVTRLLKT-GRFAR 138 (271)
T ss_dssp TTEEEEEEE-CSSCCHHHHHHHHHH-CCEEE
T ss_pred CccEEEecC-cccccHHHHHHHhcC-CCCCE
Confidence 356789999 999999999999977 55543
No 252
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=38.25 E-value=13 Score=29.04 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=24.6
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEE
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVR 39 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~ 39 (182)
...++|+|| |+.++..-|.+++.....+..+.
T Consensus 114 ~~~~vv~Nl-PY~iss~il~~ll~~~~~~~~~~ 145 (279)
T 3uzu_A 114 PSLRIIGNL-PYNISSPLLFHLMSFAPVVIDQH 145 (279)
T ss_dssp CCEEEEEEC-CHHHHHHHHHHHGGGGGGEEEEE
T ss_pred CceEEEEcc-CccccHHHHHHHHhccCCccEEE
Confidence 346789999 99999999999997654555443
No 253
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=38.22 E-value=42 Score=18.81 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=33.5
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHhc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~l 62 (182)
++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGM-TCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECC-CHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCe-ecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5667777 332234567888887765655544 57788888863 45556666553
No 254
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=38.14 E-value=53 Score=18.32 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=36.0
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHhc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~l 62 (182)
++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|. +.+....+|..+
T Consensus 6 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGM-TCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTC-CSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCe-EcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 5677788 344445678888888777776666 5678888886 345556666653
No 255
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=37.68 E-value=79 Score=20.22 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=37.3
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHhc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~l 62 (182)
+|.|.++ ....-...|+..+...-.|..+.+ ..+.+.|+|.. .+....+|..+
T Consensus 11 ~l~v~Gm-~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 11 QMQVGGM-DCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEESCC-CGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEECCc-CCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5678888 444556779999998877777666 46788999873 35556666653
No 256
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=37.53 E-value=57 Score=18.51 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=35.1
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHhc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~l 62 (182)
++.|.++ ....-...|+..+.+.-.|..+.+ ..+.+.|.|.. .+....+|+.+
T Consensus 5 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGM-TCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCc-cCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4667777 333334668888888777776665 56788888863 45556666653
No 257
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=37.12 E-value=60 Score=18.67 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=36.4
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHhc
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~l 62 (182)
.++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|.. .+....+|+.+
T Consensus 10 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGM-TCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCC-CSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCc-cCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35778888 445566778888888766655444 57888888863 35556666653
No 258
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=36.23 E-value=56 Score=18.09 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=34.9
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC---HHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET---QEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~---~~~a~~Ai~~ 61 (182)
++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|.. .+....+|+.
T Consensus 3 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGM-TCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESS-CSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCc-ccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 4778888 333345678888888777776666 46778888864 3455566654
No 259
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=36.16 E-value=52 Score=22.48 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCC-ceEEEEEeCCEEEEEeCCHHH
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEE 54 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~i~~g~afV~f~~~~~ 54 (182)
.+..++|-.. +++..|.-|-..+.+.| .|.+..-.+|.-||.|...++
T Consensus 12 ~g~p~l~l~~-~fdraW~rvg~ALdr~Gf~V~Drdrs~G~y~V~Y~~~~~ 60 (127)
T 2yh5_A 12 TGLPMLVVRG-PFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSD 60 (127)
T ss_dssp TSCEEEEEES-CHHHHHHHHHHHHHHTTEEEEEEEGGGTEEEEEECCCCH
T ss_pred CCCEEEEEcC-CHHHHHHHHHHHHHhCCCeEEeeeccCeEEEEEeCCCCc
Confidence 4445666677 78889999999999999 677777789999999997654
No 260
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=35.72 E-value=50 Score=24.56 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=26.2
Q ss_pred eEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCC
Q 030175 35 VLHVRI---RRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 35 i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
|..+.. .+||-|||=.+..++.+||+.+.+.
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 666655 4899999999999999999888775
No 261
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=35.61 E-value=54 Score=21.42 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHhhc-cCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCC
Q 030175 17 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 17 p~~~~e~~L~~~F~-~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
+-.+.-++|..... .||.-..+......-.|-..+.++.++||+.|+-.
T Consensus 37 ~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 37 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp CSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhccC
Confidence 44567777766554 68887887777777889999999999999976643
No 262
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.47 E-value=16 Score=24.14 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCCCHHHHHHhhcc-CCceEEEEE---eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEee
Q 030175 18 IRTRERDIKRHFEP-YGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (182)
Q Consensus 18 ~~~~e~~L~~~F~~-~G~i~~~~i---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 78 (182)
..++|++|+.++.. || +..+.| -.----|...+..+.+.|++. ..-.|..|++.+.+
T Consensus 34 ~~~tweel~~mvk~~f~-L~~~~IkY~DEenD~V~i~Sq~E~eEAlkv---a~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 34 ENTTWADIEAMVKVSFD-LNTIQIKYLDEENEEVSINSQGEYEEALKM---AVKQGNQLQMQVHE 94 (101)
T ss_dssp TTSCHHHHHHHHHHHHC-CSSBCCEEECTTSCEECCCSHHHHHHHHHH---HHHHTSEEEEECCB
T ss_pred CCCCHHHHHHHHHHHcC-CCceEEEEecCCCCEEEEecHHHHHHHHHH---hccCCCEEEEEEee
Confidence 47999999998863 44 222222 111123455667777788762 12235667777755
No 263
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=34.98 E-value=23 Score=24.62 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=20.3
Q ss_pred EccCCCCCCCHHHHHHhhc-cCC--ceEEEEE
Q 030175 12 VINFDPIRTRERDIKRHFE-PYG--NVLHVRI 40 (182)
Q Consensus 12 V~nL~p~~~~e~~L~~~F~-~~G--~i~~~~i 40 (182)
|-.+ ...++++++.+++. .++ +|..+.|
T Consensus 68 v~~~-~~GiSe~~a~~~v~~~~~~~~I~~v~l 98 (136)
T 2gu3_A 68 SKEA-KEGISEDKAAKIIKDEGLVSKQKEVHL 98 (136)
T ss_dssp EEEG-GGSCCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEH-hhCCCHHHHHHHHHHhCCccceeEEee
Confidence 5566 56899999999995 344 6777766
No 264
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=34.09 E-value=9.3 Score=23.74 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=25.4
Q ss_pred CceEEEEEeCCEEEEEeCCHHHHHHHHHhcC---C--CccCCcEEEEEEeec
Q 030175 33 GNVLHVRIRRNFAFVQFETQEEATKALESTD---R--SKLVDRVISVEYALK 79 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~---g--~~~~g~~l~V~~a~~ 79 (182)
|.|+.....+||+||+-.+-+++--=+.+|. | ....|..+..++...
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp EEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred EEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 5566665579999998775322211112222 2 223566766666543
No 265
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=33.56 E-value=76 Score=20.52 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=34.8
Q ss_pred EEEEccCCCCCCC--HHHHHHhhccC--CceEEEEEeCCEEE-EEeCCHHHHHHHHHhcCCCccCC
Q 030175 9 TLFVINFDPIRTR--ERDIKRHFEPY--GNVLHVRIRRNFAF-VQFETQEEATKALESTDRSKLVD 69 (182)
Q Consensus 9 ~l~V~nL~p~~~~--e~~L~~~F~~~--G~i~~~~i~~g~af-V~f~~~~~a~~Ai~~l~g~~~~g 69 (182)
.|+|..- |.-++ -+.|...+... ..|..|.+.+-|-| ++..+.++|.+.++.|....|.+
T Consensus 19 ~V~V~lK-pgVlDPqG~aV~~aL~~LG~~~V~~VR~GK~~el~~~~~~~~~a~~~v~~mc~kLLaN 83 (94)
T 1vq3_A 19 AIDVQYR-SNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVKKACEELLVN 83 (94)
T ss_dssp EEEEEEC-TTSCCHHHHHHHHHHHHTTCCCEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTTSC
T ss_pred EEEEEEC-CCCcCcHHHHHHHHHHHcCCCccceeeeeeEEEEEecCCCHHHHHHHHHHHHHHHcCC
Confidence 4666543 32222 24566666654 46899988776665 56667777766555554444433
No 266
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=32.94 E-value=67 Score=18.00 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=32.0
Q ss_pred CCEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC
Q 030175 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET 51 (182)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~ 51 (182)
..++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|.|..
T Consensus 5 ~~~~~v~gm-~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGM-TCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDP 50 (75)
T ss_dssp CEEEEEETC-CTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEEEECCc-ccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECC
Confidence 346788898 444456778888988877777666 56788888864
No 267
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=32.71 E-value=66 Score=17.85 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=34.1
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC---CHHHHHHHHHhc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE---TQEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~---~~~~a~~Ai~~l 62 (182)
++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|. +.+....+|..+
T Consensus 5 ~~~v~gm-~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGM-TCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSC-CSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCe-ecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 4667777 333334668888888777777665 4677888886 344555666543
No 268
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=38.90 E-value=9.3 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.0
Q ss_pred eCCEEEEEeCCHHHHHHHHHhcC
Q 030175 41 RRNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 41 ~~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
..|.|.|.|.+.++...||++|-
T Consensus 76 kegqamirfqnsdeqrlaiqkll 98 (137)
T 2lsl_A 76 KEGQAMIRFQNSDEQRLAIQKLL 98 (137)
Confidence 36889999999988888887663
No 269
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=32.18 E-value=64 Score=20.80 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHhhc-cCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEEeec
Q 030175 17 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 17 p~~~~e~~L~~~F~-~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
+-.+.-++|..-.. .||.-..+.....--.|-..+.++.++||+.|+-.. .-+.|+|-+...
T Consensus 21 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~~ 83 (94)
T 2jrh_A 21 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLSQ 83 (94)
T ss_dssp CSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEEC
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhccCc-cccceEEEEEcC
Confidence 44567777765554 688878887777788899999999999999766433 233456555543
No 270
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=32.08 E-value=31 Score=22.52 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.6
Q ss_pred CCHHHHHHhhccCCceEEEEE
Q 030175 20 TRERDIKRHFEPYGNVLHVRI 40 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~i 40 (182)
.+++.|.+.|+..|+|+.-.+
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~M 24 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSM 24 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEE
T ss_pred hHHHHHHHHHhccCCceEeec
Confidence 467789999999999988776
No 271
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=31.90 E-value=42 Score=27.13 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=38.2
Q ss_pred CCEEEEccCCCCC---CCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030175 7 TKTLFVINFDPIR---TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 7 ~~~l~V~nL~p~~---~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
...-+|||| ..- -....+.++..+||.|..+.+ -+.-+|.+.+.+.++.++..
T Consensus 16 ~~~PliG~~-~~~~~~~~~~~~~~~~~~yG~v~~~~~-g~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 16 FPLPIIGNL-FQLELKNIPKSFTRLAQRFGPVFTLYV-GSQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp CCBTTTBTG-GGCCTTCHHHHHHHHHHHHCSEEEEEE-TTEEEEEECSHHHHHHHHHT
T ss_pred CCcccccCh-hhhccccHhHHHHHHHHHhCCEEEEEE-CCccEEEECCHHHHHHHHhc
Confidence 334467887 321 124567888899999988876 35677888999999999864
No 272
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=31.69 E-value=35 Score=26.00 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=21.4
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceE
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVL 36 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~ 36 (182)
..+.|+|| |+.++...|.+++.....+.
T Consensus 91 ~~~vvsNl-PY~i~~~il~~ll~~~~~~~ 118 (252)
T 1qyr_A 91 PLRVFGNL-PYNISTPLMFHLFSYTDAIA 118 (252)
T ss_dssp CEEEEEEC-CTTTHHHHHHHHHTTGGGEE
T ss_pred ceEEEECC-CCCccHHHHHHHHhcCCCcc
Confidence 46889999 99999888888887543343
No 273
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=31.19 E-value=26 Score=21.62 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=25.2
Q ss_pred CCceEEEEEeCCEEEEEeCCHHHH---HHHHHhcCCCccCCcEEEEEEeec
Q 030175 32 YGNVLHVRIRRNFAFVQFETQEEA---TKALESTDRSKLVDRVISVEYALK 79 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~~~~a---~~Ai~~l~g~~~~g~~l~V~~a~~ 79 (182)
.|.|+.....+||+||+-++-.+. ..||.. .+..-.|..|..++...
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~-~g~l~~G~~V~F~~~~g 53 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDENGDNRYFHVIKVAN-PDLIKKDAAVTFEPTTN 53 (74)
T ss_dssp EEEEEEEETTTTEEEEEESSSCEEEEEGGGBSS-GGGCCTTCEEEEEEEEC
T ss_pred ceEEEEEECCCCeEEEecCCCCceEEEHhHccc-CCCCCCCCEEEEEEEeC
Confidence 366666666799999987653110 012211 12233566666666543
No 274
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=30.70 E-value=73 Score=21.01 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=25.1
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~ 61 (182)
+|.|.|+ ....-...|+..+.+...|..+.+ ..+.+.|+|. +.++..++|+.
T Consensus 83 ~~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 140 (149)
T 2ew9_A 83 ELTITGM-TCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEE 140 (149)
T ss_dssp EEEEESC-CSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHH
T ss_pred EEEEEec-cCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 3455555 222223445555555544544443 3556666664 23444455544
No 275
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=30.50 E-value=95 Score=21.73 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHhhccCCceE--EEEE---e------------------CCEEEEEeCCHHHHHHHHH
Q 030175 24 DIKRHFEPYGNVL--HVRI---R------------------RNFAFVQFETQEEATKALE 60 (182)
Q Consensus 24 ~L~~~F~~~G~i~--~~~i---~------------------~g~afV~f~~~~~a~~Ai~ 60 (182)
...++|..||.+. +|+- + --|.+|+|.+.+..+++.+
T Consensus 49 ~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 49 KAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 3457899999654 4443 1 1289999999998888764
No 276
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=30.30 E-value=77 Score=17.85 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=35.3
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC--HHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET--QEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~--~~~a~~Ai~~ 61 (182)
++.|.++ ....-...|+..+.+...|..+.+ ..+.+.|+|.. .+....+|..
T Consensus 6 ~~~v~gm-~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~ 61 (73)
T 1mwy_A 6 SWKVSGM-DCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQK 61 (73)
T ss_dssp EEEEESC-CSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHH
T ss_pred EEEECCc-CCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHH
Confidence 5778888 444445678888888777776666 46788888875 3344555554
No 277
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=30.26 E-value=44 Score=18.73 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=31.3
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~ 61 (182)
++.|.|+ ....-...|+..+.+. .|..+.+ ..+.+.|+|...+....+|+.
T Consensus 4 ~~~v~gm-~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDI-SCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGG-GSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCc-CcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 4667777 3333345677777766 5655544 578888888865344455553
No 278
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=29.79 E-value=80 Score=21.46 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=17.0
Q ss_pred CCceEEEEEeC--CEE--EEE-eCCHHHHHHHHHhcC
Q 030175 32 YGNVLHVRIRR--NFA--FVQ-FETQEEATKALESTD 63 (182)
Q Consensus 32 ~G~i~~~~i~~--g~a--fV~-f~~~~~a~~Ai~~l~ 63 (182)
+-.|+.|.|.. .+| ||. |.+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHH
Confidence 44788888853 344 444 434544444444443
No 279
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=29.52 E-value=62 Score=21.44 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHhhc-cCCceEEEEEeCCEEEEEeCCHHHHHHHHHhcCCC
Q 030175 17 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 17 p~~~~e~~L~~~F~-~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
+-.+.-++|..-.. .||.-..+.....--.|-..+.++.++||+.|+-.
T Consensus 48 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 48 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp CSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhccC
Confidence 34466677665543 57777777766777888899999999999977643
No 280
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=28.52 E-value=28 Score=24.65 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=15.4
Q ss_pred CCceEEEEEeCCEEEEEeCC
Q 030175 32 YGNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f~~ 51 (182)
.|.|+.....+||+||+-++
T Consensus 64 ~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 64 KGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEeCCCCeEEeccCC
Confidence 46666666679999999875
No 281
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.49 E-value=1.1e+02 Score=19.10 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=33.1
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC-CHHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE-TQEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~-~~~~a~~Ai~~ 61 (182)
+|.|. + ....-...|++.+.+...|..+.+ ..+.+.|+|. +.+...++|+.
T Consensus 22 ~l~V~-m-~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-M-TCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-C-CSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-e-ECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHH
Confidence 45555 6 222234678999998877766665 5677888875 45556666664
No 282
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=28.44 E-value=29 Score=29.40 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHHhh--ccCCceEEEEEe-------CCEEEEEeCCHHHHHHHH
Q 030175 24 DIKRHF--EPYGNVLHVRIR-------RNFAFVQFETQEEATKAL 59 (182)
Q Consensus 24 ~L~~~F--~~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai 59 (182)
+|..+| ..+|-|+.+.|. ...+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 355666 368889998871 235688899877765543
No 283
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.38 E-value=1.4e+02 Score=20.08 Aligned_cols=44 Identities=7% Similarity=0.093 Sum_probs=25.2
Q ss_pred HHHHHhhccCC-ceEEEEE--e--CCEEEEEeCCHHHHHHHHHhcCCCcc
Q 030175 23 RDIKRHFEPYG-NVLHVRI--R--RNFAFVQFETQEEATKALESTDRSKL 67 (182)
Q Consensus 23 ~~L~~~F~~~G-~i~~~~i--~--~g~afV~f~~~~~a~~Ai~~l~g~~~ 67 (182)
..+.++|.+.| +|..+.. . +..+.|.+++.+.|.++|+. .|.++
T Consensus 87 a~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 87 AKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 44445555544 4433221 1 23456788888888888876 56554
No 284
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=28.11 E-value=76 Score=17.06 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=33.5
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~ 61 (182)
++.|.++ ....-...|+..+...-.|..+.+ ..+.+.|+|.. .+....+|..
T Consensus 5 ~~~v~gm-~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGM-SCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCc-ccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5777888 332334568888887766766655 46788888863 3455566654
No 285
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=28.09 E-value=31 Score=16.28 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=10.0
Q ss_pred HHHHHHhhccCC
Q 030175 22 ERDIKRHFEPYG 33 (182)
Q Consensus 22 e~~L~~~F~~~G 33 (182)
-.+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467899999987
No 286
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=27.49 E-value=56 Score=22.72 Aligned_cols=31 Identities=10% Similarity=0.277 Sum_probs=25.6
Q ss_pred eEEEEEe---CCEEEEEeCCHHHHHHHHHhcCCC
Q 030175 35 VLHVRIR---RNFAFVQFETQEEATKALESTDRS 65 (182)
Q Consensus 35 i~~~~i~---~g~afV~f~~~~~a~~Ai~~l~g~ 65 (182)
|..+.++ .||.||++...++...+|..+.|.
T Consensus 33 i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5666664 899999999999999999888774
No 287
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=33.05 E-value=13 Score=24.73 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=29.6
Q ss_pred CHHHHHHhhccCCceEEEEEe----CC-----EEEEEeCCHHHHHHHHHhcCCCc
Q 030175 21 RERDIKRHFEPYGNVLHVRIR----RN-----FAFVQFETQEEATKALESTDRSK 66 (182)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~i~----~g-----~afV~f~~~~~a~~Ai~~l~g~~ 66 (182)
++++|..+..+.+ +..+.+. .| .-+-.|.+.++|.+|+..|....
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 4667777777775 3334431 22 23448999999999999887644
No 288
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=26.55 E-value=99 Score=24.83 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=30.7
Q ss_pred HHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030175 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
...|.++..+||.|..+.+ -+.-+|.+.+.+.++..+..
T Consensus 51 ~~~~~~l~~~YG~i~~~~~-g~~~~vvv~dp~~~~~il~~ 89 (482)
T 3k9v_A 51 HDTLAEYHKKYGQIFRMKL-GSFDSVHLGSPSLLEALYRT 89 (482)
T ss_dssp HHHHHHHHHHHCSEEEEEE-TTEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEcc-CCCCEEEEcCHHHHHHHHHh
Confidence 3457788899999998887 34567788899999888764
No 289
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=26.52 E-value=39 Score=27.39 Aligned_cols=22 Identities=23% Similarity=0.030 Sum_probs=18.5
Q ss_pred EEEEccCCCCCCCHHHHHHhhcc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEP 31 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~ 31 (182)
.++|+|| |++++..-|.++|..
T Consensus 144 ~~vvaNL-PYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANV-TGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEC-CSTTHHHHHHHHHHH
T ss_pred eEEEEEC-CCchHHHHHHHHHHh
Confidence 4789999 999999888887763
No 290
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=26.44 E-value=95 Score=25.08 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=30.2
Q ss_pred HHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030175 23 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
..|.++..+||+|..+.|. +.-+|.+.+.+.++.++..
T Consensus 36 ~~~~~l~~kYG~i~~~~~g-~~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLG-NVESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHCSEEEEEET-TEEEEEECCHHHHHHHHHT
T ss_pred HHHHHHHHHcCceeeccCC-CCCEEEEcCHHHHHHHHHh
Confidence 4577888999999998863 4467888999999998864
No 291
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=26.03 E-value=36 Score=20.23 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=14.1
Q ss_pred CceEEEEEeCCEEEEEeCC
Q 030175 33 GNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~ 51 (182)
|.|+.....+||+||+-.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEECCCCeEEEecCC
Confidence 5666666579999998765
No 292
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=25.83 E-value=40 Score=20.62 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=12.8
Q ss_pred CceEEEEEeCCEEEEEeCCH
Q 030175 33 GNVLHVRIRRNFAFVQFETQ 52 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~~ 52 (182)
|.| |...+..|||.|++.
T Consensus 34 GtI--Vd~~~~~ClV~FeD~ 51 (69)
T 2xk0_A 34 GTI--IDQTSDQYLIRFDDQ 51 (69)
T ss_dssp EEE--EEECSSCEEEEETTC
T ss_pred EEE--EecCCceEEEEecCC
Confidence 445 444688999999864
No 293
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=25.76 E-value=30 Score=20.65 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=14.2
Q ss_pred CceEEEEEeCCEEEEEeCC
Q 030175 33 GNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~ 51 (182)
|.|+.....+||+||+-.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5566665579999999774
No 294
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=25.70 E-value=80 Score=20.24 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=28.0
Q ss_pred CCCHHHHHHhhccCCc---eEEEEE------eCCEEEEEeCC--HHHHHHHHHhcCC
Q 030175 19 RTRERDIKRHFEPYGN---VLHVRI------RRNFAFVQFET--QEEATKALESTDR 64 (182)
Q Consensus 19 ~~~e~~L~~~F~~~G~---i~~~~i------~~g~afV~f~~--~~~a~~Ai~~l~g 64 (182)
.+.+-.|-++..+||. |..-.| .-|.-+|++.. .++.++|+..|..
T Consensus 31 ~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 31 TTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp SCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3455566677777763 333333 23667788874 6677788877643
No 295
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.56 E-value=34 Score=25.95 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=21.4
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCce
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNV 35 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i 35 (182)
..++|+|| |+.++..-|.+++.....+
T Consensus 96 ~~~vv~Nl-Py~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNL-PYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEEC-CTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEEC-chhccHHHHHHHHhcCCCC
Confidence 45789999 9999999898888764333
No 296
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=25.53 E-value=9.7 Score=24.58 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=35.7
Q ss_pred EEEccCCCCCCCHHHHHHhhccCCceEEEEEe--CCEEEEEeCCH-HHHHHHHHhcCCCccCCcEEEEE
Q 030175 10 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQ-EEATKALESTDRSKLVDRVISVE 75 (182)
Q Consensus 10 l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~--~g~afV~f~~~-~~a~~Ai~~l~g~~~~g~~l~V~ 75 (182)
+..|||++..++. ++-.+++--.|-.+.|+ ...|||.|+.. -.-++.++.|+...+....|.|+
T Consensus 13 ~kfg~It~EeA~~--~QYeL~k~~avyRvFiNgYAk~g~ViFDe~kl~~e~lLeelkPEVi~ek~lTv~ 79 (96)
T 2f40_A 13 KFTTNLTPEEAKI--VQYELSTRDEFYRVFINPYAKVAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQ 79 (96)
T ss_dssp ECCCSCTTTTTHH--HHHTTTTTTTBCCCCCCTTTTCCEEECCBCSCSHHHHHHHTTTCSSCCCCCCCS
T ss_pred eecCCCCHHHHHH--HHHHhhcchhhhhheeccccccceEEECcccCCHHHHHHHcChhhcccccccHH
Confidence 4457785443332 22224444444444442 23478989743 34456666888888877776654
No 297
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=25.26 E-value=38 Score=20.27 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=14.2
Q ss_pred CceEEEEEeCCEEEEEeCC
Q 030175 33 GNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~ 51 (182)
|.|+.....+||+||+-.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 5666666579999998765
No 298
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.29 E-value=32 Score=22.12 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=12.3
Q ss_pred CCceEEEEEeCCEEEEEe
Q 030175 32 YGNVLHVRIRRNFAFVQF 49 (182)
Q Consensus 32 ~G~i~~~~i~~g~afV~f 49 (182)
-|.|+.....+||+||+-
T Consensus 10 tG~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 10 SGHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred ceEEEEeeCCCCeEEeEe
Confidence 455655555789999964
No 299
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.26 E-value=33 Score=21.35 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=13.9
Q ss_pred CceEEEEEeCCEEEEEeCC
Q 030175 33 GNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~ 51 (182)
|.|+...-.+||+||+-.+
T Consensus 11 G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEETTTTEEEEEEGG
T ss_pred eEEEEEECCCCcEEEecCC
Confidence 5666655579999998764
No 300
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=24.05 E-value=36 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=14.3
Q ss_pred CceEEEEEeCCEEEEEeCC
Q 030175 33 GNVLHVRIRRNFAFVQFET 51 (182)
Q Consensus 33 G~i~~~~i~~g~afV~f~~ 51 (182)
|.|+...-.+||+||+-.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEETTTTEEEEECTT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5666666579999998765
No 301
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=23.99 E-value=27 Score=26.71 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=23.2
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEE
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHV 38 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~ 38 (182)
....|+|| |+.++...|..++.....+..+
T Consensus 97 ~~~vv~Nl-PY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 97 PLRVVGNL-PYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp CEEEEEEC-CHHHHHHHHHHHHHTGGGEEEE
T ss_pred CeEEEecC-CcccCHHHHHHHHhCCCChheE
Confidence 34589999 9999999999999865555443
No 302
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.93 E-value=77 Score=27.74 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCCCHHHHHHhhc----cCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhc
Q 030175 18 IRTRERDIKRHFE----PYGNVLHVRIR-------RNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 18 ~~~~e~~L~~~F~----~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l 62 (182)
.+.+--||..+|. .+|-|+++.|. ..+++|.|.+.++|.+|+..+
T Consensus 353 k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 353 RMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp SCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3344447778773 46788988882 357889999999999888765
No 303
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=23.59 E-value=98 Score=16.79 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=34.8
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~ 61 (182)
++.|.++ ....-...|+..+.+.-.|..+.+ ..+.+.|+|.. .+....+|..
T Consensus 6 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGM-RCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETC-TTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCc-cCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888 344445668888888766766655 46788888863 3445556654
No 304
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=23.36 E-value=2e+02 Score=20.28 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=37.2
Q ss_pred CEEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeC----CHHHHHHHHHhc
Q 030175 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALEST 62 (182)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~----~~~~a~~Ai~~l 62 (182)
..|.|.++ ....-...|+..+.+.-.|..+.+ ..+.+.|+|. +.++...+|..+
T Consensus 124 ~~l~v~Gm-~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGM-TCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCC-CSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCc-cCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888 333445678999998877877666 5778889886 345566666654
No 305
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=23.26 E-value=58 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHhc
Q 030175 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~l 62 (182)
-++|+.+|..|-.+.. .+.+.+..|.+.+.|.+.|+..
T Consensus 132 l~~i~~fF~~YK~le~---gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 132 KKRIVHFFEHYKDLEK---GKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHTTTTST---TCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccC---CCcEEEccCcCHHHHHHHHHHH
Confidence 4678899999954431 1345677889999999888753
No 306
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=23.21 E-value=1.6e+02 Score=22.80 Aligned_cols=51 Identities=8% Similarity=-0.089 Sum_probs=30.4
Q ss_pred HHHHHhhccCCceEEEEE--eCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 030175 23 RDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 74 (182)
++|.+.+.++|.+ .+.| .-...|..|.+.+.|+++.+.|...-+.+..+.+
T Consensus 238 ~~i~~~~~~~Ga~-ga~mSGsGptvfal~~~~~~a~~~~~~l~~~g~~~~v~~~ 290 (306)
T 3pyf_A 238 ARALRAGVEAGAL-AGIVSGSGPTCAFLCTSASSAIDVGAQLSGAGVCRTVRVA 290 (306)
T ss_dssp HHHHHHHHHTTCS-EEEECTTSSEEEEEESSHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHhcCCC-EEEEcCcchhheEEeCCHHHHHHHHHHHHhcCCcceEEEe
Confidence 3455555566643 2334 2347788899988888887777644444444433
No 307
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=23.16 E-value=1.1e+02 Score=17.29 Aligned_cols=52 Identities=8% Similarity=0.165 Sum_probs=33.2
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHh
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~ 61 (182)
++.|.++ ....-...|+..+.+.-.|..+.+ ..+.+.|.|.. .+....+|..
T Consensus 6 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 6 EFDIEGM-TCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEEESC-CCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCc-cCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888 333334568888887766766554 56778888863 4455566654
No 308
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=22.86 E-value=50 Score=17.42 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.9
Q ss_pred CCCCHHHHHHhhccCC
Q 030175 18 IRTRERDIKRHFEPYG 33 (182)
Q Consensus 18 ~~~~e~~L~~~F~~~G 33 (182)
..++.++|+.+|....
T Consensus 20 rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGIK 35 (37)
T ss_dssp SCCCHHHHHHHHHTCC
T ss_pred CcCCHHHHHHHHHHcc
Confidence 4688999999998753
No 309
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.75 E-value=86 Score=19.92 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCCHHHHHHhhcc-CC-ceEEEEE---eCC--EEEEEeCCHHHHHHHHHh
Q 030175 19 RTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALES 61 (182)
Q Consensus 19 ~~~e~~L~~~F~~-~G-~i~~~~i---~~g--~afV~f~~~~~a~~Ai~~ 61 (182)
..+..+|++.+++ |+ .|..|.. +.+ -|||.+....+|......
T Consensus 33 ~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 33 RATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp TCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 6889999888876 55 4555543 334 499999887777765443
No 310
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=21.66 E-value=59 Score=20.77 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHhhccCCceEEEEE-----eCCEEE--EEeCCHHHHHHHHHhcCCCccCCcEEEEEEe
Q 030175 23 RDIKRHFEPYGNVLHVRI-----RRNFAF--VQFETQEEATKALESTDRSKLVDRVISVEYA 77 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i-----~~g~af--V~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 77 (182)
..|.+++.+||.+....| .++.++ |.+.-..+...||.. .-..|.|-.++..++
T Consensus 22 ~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~g-kLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 22 RQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSG-KLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHH-HHHTSTTEEEEEEEC
T ss_pred HHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHH-HhCCCCCEEEEEEEe
Confidence 479999999999887777 245444 455544554455432 112345544444333
No 311
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=21.53 E-value=50 Score=19.97 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=15.9
Q ss_pred cCCceEEEEEeCCEEEEEeCCH
Q 030175 31 PYGNVLHVRIRRNFAFVQFETQ 52 (182)
Q Consensus 31 ~~G~i~~~~i~~g~afV~f~~~ 52 (182)
..|.|+.....+||+||+-.+-
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g 27 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDG 27 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTC
T ss_pred ccEEEEEEECCCCcEEEecCCC
Confidence 3466766666799999987653
No 312
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=21.29 E-value=1.2e+02 Score=17.14 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030175 20 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
++|++.+.....| .+-.|-.|.+.++|+++|..
T Consensus 18 ~sW~ec~~qV~g~---------~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 18 LTWNECRAQVDRF---------PAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp SSHHHHHHHHTTC---------TTCEEEEESSHHHHHHHHHC
T ss_pred CCHHHHHHHhcCC---------CCCccCCCCCHHHHHHHHHh
Confidence 4677777666554 35567789999999999864
No 313
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=21.19 E-value=1.2e+02 Score=25.44 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=28.0
Q ss_pred HHHHHhhc----cCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhc
Q 030175 23 RDIKRHFE----PYGNVLHVRIR-------RNFAFVQFETQEEATKALEST 62 (182)
Q Consensus 23 ~~L~~~F~----~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l 62 (182)
-+|..+|. .+|-|+.+.|. ...+++.|.+.++|.+|+..+
T Consensus 201 ~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 201 YDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred cCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 35555553 45678888771 246788999999998887665
No 314
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=21.11 E-value=1.2e+02 Score=24.35 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHH
Q 030175 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 60 (182)
Q Consensus 22 e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~ 60 (182)
.+.|.++.++||+|..+.+. +.-+|...+.+.++.++.
T Consensus 34 ~~~~~~~~~kYG~i~~~~~~-~~~~vvv~~~~~i~~il~ 71 (461)
T 3ld6_A 34 IEFLENAYEKYGPVFSFTMV-GKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp HHHHHHHHHHHCSEEEEEET-TEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEC-CccEEEEeCHHHHHHHHh
Confidence 35578888999999888763 556777788888888775
No 315
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=21.10 E-value=18 Score=29.97 Aligned_cols=42 Identities=5% Similarity=0.050 Sum_probs=31.0
Q ss_pred HHHHHhhccCCceEEEEE----eCCEEEEEeCCHHHHHHHHHhcCC
Q 030175 23 RDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDR 64 (182)
Q Consensus 23 ~~L~~~F~~~G~i~~~~i----~~g~afV~f~~~~~a~~Ai~~l~g 64 (182)
-.|.+++++.|.|....| +.|.+||.+-.+++|+++++.|+.
T Consensus 316 ppiF~~l~~~G~v~~~EM~rtFNmGiGmVlvV~~e~a~~vl~~L~~ 361 (394)
T 3kiz_A 316 PPLFQLIQGQSNTPWEEMYKVFNMGHRLEIYTDAAHAEGMIAIAKK 361 (394)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHSCTTEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCHHHHHHhcCCcccEEEEECHHHHHHHHHHHHH
Confidence 356666666666655433 678899999999999999887753
No 316
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis}
Probab=21.05 E-value=2.6e+02 Score=20.79 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCCCCEEEEccCCCCCCCHHHHHHhhccCC---ceEEEEE
Q 030175 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYG---NVLHVRI 40 (182)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G---~i~~~~i 40 (182)
......|||-++.....++..|.+.|.+.| .|..+.+
T Consensus 4 ~~~~pvvliHG~~~~~~~~~~l~~~L~~~g~~~~vi~~dv 43 (249)
T 3fle_A 4 IKTTATLFLHGYGGSERSETFMVKQALNKNVTNEVITARV 43 (249)
T ss_dssp -CCEEEEEECCTTCCGGGTHHHHHHHHTTTSCSCEEEEEE
T ss_pred CCCCcEEEECCCCCChhHHHHHHHHHHHcCCCceEEEEEE
Confidence 345568999887444456788888898876 3555554
No 317
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=20.64 E-value=34 Score=24.05 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=20.9
Q ss_pred EEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEeCCHHHHHHHHHh
Q 030175 11 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (182)
Q Consensus 11 ~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f~~~~~a~~Ai~~ 61 (182)
|.++|+ ......|+++|..|.. |.+.+++.+||+.
T Consensus 23 f~~~Lt--~eeK~~Lkev~kn~~~--------------f~~e~e~i~alK~ 57 (140)
T 2w9y_A 23 FSSSIT--ADEKPVLHEVFQKHSC--------------FSQCGEMIDEVSK 57 (140)
T ss_dssp HHHHCC--TTTHHHHHHHHTTCCC------------------TTHHHHHHH
T ss_pred HHHcCC--HHHHHHHHHHHHHHhh--------------cCCHHHHHHHHHH
Confidence 345673 3567889999999864 4555666666553
No 318
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=20.38 E-value=54 Score=28.38 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHhhc----cCCceEEEEEe-------CCEEEEEeCCHHHHHHHHHhcC
Q 030175 24 DIKRHFE----PYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 63 (182)
Q Consensus 24 ~L~~~F~----~~G~i~~~~i~-------~g~afV~f~~~~~a~~Ai~~l~ 63 (182)
+|..+|. .+|-|+++.|. ...+++.|.+.++|.+|+..+.
T Consensus 289 dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 289 NYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred chhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 4555553 45678888871 2467889999999988877553
No 319
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=20.05 E-value=1.6e+02 Score=17.80 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=36.1
Q ss_pred EEEEccCCCCCCCHHHHHHhhccCCceEEEEE--eCCEEEEEeCC----HHHHHHHHHhc
Q 030175 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (182)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i--~~g~afV~f~~----~~~a~~Ai~~l 62 (182)
++.|.++ ....-...|+..+.....|..+.+ ..+.+.|+|.. .+....+|..+
T Consensus 19 ~~~v~gm-~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 19 YFDVLGI-CCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEETTC-CTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCc-CCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778888 445556778888888766766655 57788888863 44555666543
No 320
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=20.04 E-value=1e+02 Score=19.75 Aligned_cols=42 Identities=5% Similarity=0.051 Sum_probs=28.2
Q ss_pred CCCEEEEccCCCCCCCHHHHHHhhccCCceEEEEEeCCEEEEEe
Q 030175 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQF 49 (182)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~i~~g~afV~f 49 (182)
.+.+|+|.++ .. .+.++|+++...+|....-.+.+.+-+|..
T Consensus 17 ~g~~i~isg~-~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~ 58 (107)
T 3l3e_A 17 HKVVVCVSKK-LS-KKQSELNGIAASLGADYRRSFDETVTHFIY 58 (107)
T ss_dssp TTCEEEECGG-GG-GGHHHHHHHHHHTTCEEESSCCTTCCEEEC
T ss_pred CCeEEEEeCC-Ch-HhHHHHHHHHHHcCCEEeccccCCceEEEe
Confidence 4678888887 32 678899999999986544444444444433
Done!