BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030176
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 139 bits (351), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 93/122 (76%), Gaps = 2/122 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LGGPGSGKGTQCANIV FG+ HLSAGDLLR E +SGS++G MI MIK G+IVPS VT+
Sbjct: 12 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
KLL+ A++ + FL+DGFPRNEEN ++E K ++ +FVLFFDC EE M +R+L R
Sbjct: 72 KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 131
Query: 145 NQ 146
+
Sbjct: 132 GE 133
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 8/128 (6%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+ S+ G +I+ IKEGKIVP E+T
Sbjct: 9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 86 IKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
I LL++ M+++ +KFLIDGFPRN++N + K + FVLFFDC+ E
Sbjct: 69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 139 RRILNRNQ 146
R L R +
Sbjct: 129 ERCLERGK 136
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 88/125 (70%), Gaps = 5/125 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
LGGPG+GKGTQC +V+ + + HLSAGDLLRAE ++GS+ G +I+N IKEG+IVP E+T
Sbjct: 21 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 86 IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
+ LL+ A+ + + KFLIDGFPR + +FE +E +F+LFFDC E+ M R+L
Sbjct: 81 LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLL 139
Query: 143 NRNQV 147
R +
Sbjct: 140 ERGKT 144
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+GGPGSGKGTQC IV+ +GYTHLS GDLLRAE+ SGS G M+ ++++G++VP E +
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 87 KLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
+L+ AM + + FLIDG+PR + FE KI +P +L+ D E M +R+L
Sbjct: 75 DMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFER--KIGQPTLLLYVDAGPETMTKRLLK 132
Query: 144 RNQV 147
R +
Sbjct: 133 RGET 136
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+GGPGSGKGTQC IV+ +GYTHLS GDLLR+E+ SGS G + ++++G++VP E +
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVL 74
Query: 87 KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
+L+ AM N FLIDG+PR + FE +P +L+ D E M +R+L R
Sbjct: 75 DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQRLLKR 133
Query: 145 NQV 147
+
Sbjct: 134 GET 136
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 85/128 (66%), Gaps = 5/128 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LGGPGSGKGTQC +V+ F + HLS+GDLLRAE++SGS G ++ M++ G++VP EV +
Sbjct: 35 LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 87 KLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILN 143
LL++AM + N FLIDG+PR + FE ++ P V+ FD SEE M +R+L
Sbjct: 95 ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSEEVMRKRLLK 152
Query: 144 RNQVRQKL 151
R + ++
Sbjct: 153 RAETSNRV 160
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 7/129 (5%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+GGPGSGKGTQC +VE +G+THLS G+LLR E+ S SE +I+++++ G +VPS + +
Sbjct: 18 IGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVL 77
Query: 87 KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
+LL++AM S D FLIDG+PR E + E +I +P+ V+ DCS + M R+L
Sbjct: 78 ELLKEAMVASLGDTRGFLIDGYPR--EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ 135
Query: 144 RNQVRQKLP 152
+ R LP
Sbjct: 136 MS--RSSLP 142
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
G P SGKGTQC I + H+SAGDLLRAEI +GSENG + +++G++VP E+ +
Sbjct: 12 GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 88 LLQKAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
++++ + ++ + +L+DG+PR+ A E + +I P+ + D +E + R++ R
Sbjct: 72 MVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLVERVVGR 129
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG P +GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA I+ G+E G ++ + +G +VP EVTI
Sbjct: 6 MGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRIL 142
++++ + +S D FL+DGFPR A + A + E VL +EE+ R+
Sbjct: 66 GIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLT 125
Query: 143 NR 144
R
Sbjct: 126 GR 127
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ I+E + H+S GD+ RA IK+G+E G ++ + +G +VP EVTI
Sbjct: 6 MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEA-VTKI--EPEFVLFFDCSEEEMERRIL 142
++ + + + K FL+DGFPR A ++ +T + + ++VL +EE+ +R+
Sbjct: 66 GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125
Query: 143 NR 144
R
Sbjct: 126 GR 127
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PGSGKGT C I ++FG HLS+G LR IK+ +E G M + I++ +VP V
Sbjct: 33 LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
+L+ +E +L+DGFPR A + + ++ + V+ + E ++ R+ R
Sbjct: 93 RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRR 148
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PGSGKGT C I ++FG HLS+G LR IK+ +E G M + I++ +VP V
Sbjct: 11 LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 70
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
+L+ +E +L+DGFPR A + + ++ + V+ + E ++ R+ R
Sbjct: 71 RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRR 126
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PGSGKGT + I +HF HLS+GDLLR + G+E G + + I +GK++P +V
Sbjct: 12 MGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMT 71
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
+L+ ++ +L+DGFPR A + +I + V+ + E +++R+ R
Sbjct: 72 RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTAR 127
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG +GKGTQ I+E +G +S GD+LRA +KSGSE G ++++ GK+V E+ I
Sbjct: 6 LGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87 KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
L+ ++ +E + FL+DGFPR A + I ++VL FD +E + RI+ R
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PGSGKGT + I HF HLS+GDLLR + G+E G + + I +GK++P +V
Sbjct: 13 MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
+L ++ +L+DGFPR A + +I + V+ + E +++R+ R
Sbjct: 73 RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTAR 128
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PGSGKGTQ N+ + Y HLS GDLLR + +E G I+N+I EGK+V ++ +
Sbjct: 35 LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
L+ + ++ K F++DG+PRN + N+ + TK++ V +F+ +E + R
Sbjct: 95 SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDG--VFYFNVPDEVLVNR 152
Query: 141 ILNR 144
I R
Sbjct: 153 ISGR 156
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + E+F HL+ GD+LRA + SGSE G ++ + GK+V E+ +
Sbjct: 22 LGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVV 81
Query: 87 KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRIL 142
+L++K +E + FL+DGFPR + + + E V+ F + + RRI
Sbjct: 82 ELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR 144
R
Sbjct: 142 GR 143
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IV +G H+S GD+ RA +K G+ G + + G +VP EVTI
Sbjct: 6 MGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTI 65
Query: 87 KLLQKAM-EESGNDKFLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRIL 142
++++ + ++ + FL+DGFPR A E A + ++V+ D ++ + R+
Sbjct: 66 GIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLT 125
Query: 143 NRNQVR 148
R R
Sbjct: 126 GRRICR 131
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + ++F HL+ GD+LRA + SGSE G ++ + GK+V E+ +
Sbjct: 22 LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL 81
Query: 87 KLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRIL 142
+L++K +E + FL+DGFPR + + + E V+ F + + RRI
Sbjct: 82 ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR 144
R
Sbjct: 142 GR 143
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + +S ++ FL+DGFPR
Sbjct: 66 GIVRERLSKSDCERGFLLDGFPRT 89
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ I E FG +S GD LRA +K+G+ G + EGK+VP + I
Sbjct: 14 LGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLII 73
Query: 87 KLLQKAMEESG-NDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
L+++ ++E+ + +L DGFPR + A EA I ++VL D E I+ R
Sbjct: 74 GLVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAI--DYVLEIDVPFSE----IIER 127
Query: 145 NQVRQKLPFS 154
R+ P S
Sbjct: 128 XSGRRTHPAS 137
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + + G+ H+S GD+LR ++ G+ G + ++ G++VP ++ I
Sbjct: 6 LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65
Query: 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
L+++ + GN + DGFPR + A + + + ++ + VL F+ +E + R+
Sbjct: 66 ALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123
Query: 144 RN 145
R
Sbjct: 124 RR 125
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PGSGKGTQC I + +G HLS GD+LR IK+G++ G +++I+ G V E+ +
Sbjct: 11 IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70
Query: 87 KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMER 139
L+++ + + F++DGFPR E + KI E V++F+ + E+
Sbjct: 71 GLVKEKFDLGVCVNGFVLDGFPR---TIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIE 127
Query: 140 RILNR 144
RI R
Sbjct: 128 RISGR 132
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29 GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
GP GSGKGTQ + + + H+ +G + R I G+E G + I G +VP ++TI
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88 LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
++ + +E G D +L+DGFPRN + + FEA+ + ++ FV+ E + RI+ R
Sbjct: 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29 GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
GP GSGKGTQ + + + H+ +G + R I G+E G + I G +VP ++TI
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88 LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
++ + +E G D +L+DGFPRN + + FEA+ + ++ FV+ E + RI+ R
Sbjct: 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + E G +S G+L R I+ G++ G + + G +VPS++T
Sbjct: 26 LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 85
Query: 87 KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
+L+ + + F++DG+PR+ E+ +A E + + + + VL F SEE + R+
Sbjct: 86 ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLK 145
Query: 143 NRNQ 146
R +
Sbjct: 146 GRGR 149
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + E G +S G+L R I+ G++ G + + G +VPS++T
Sbjct: 6 LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 65
Query: 87 KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
+L+ + + F++DG+PR+ E+ +A E + + + + VL F SEE + R+
Sbjct: 66 ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLK 125
Query: 143 NRNQ 146
R +
Sbjct: 126 GRGR 129
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGT IVE +G H+S GD+ RA +K + G ++ I +G++VP EVTI
Sbjct: 6 MGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87 KLLQKAMEESGNDK-FLIDGFPRN 109
++++ + + ++ FL+DGFPR
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRT 89
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
LG PG+GKGTQ + + + G+ LS GD+LR + G+ G ++ +++ G +VP ++ +
Sbjct: 10 LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69
Query: 87 KLLQKAMEESGNDKFLIDGFPRN 109
+L+++ + E + + DGFPR
Sbjct: 70 ELIREELAE----RVIFDGFPRT 88
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ N+ E F HL+ GD+LR++I G++ G + ++ +G +V ++ +
Sbjct: 10 IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87 KLLQKAMEESG--NDKFLIDGFPR 108
+++ + + + F++DGFPR
Sbjct: 70 NMIKDELTNNPACKNGFILDGFPR 93
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ N+ E F HL+ GD+LR++I G++ G + ++ +G +V ++ +
Sbjct: 10 IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87 KLLQKAMEESG--NDKFLIDGFPR 108
+++ + + + F++DGFPR
Sbjct: 70 NMIKDELTNNPACKNGFILDGFPR 93
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
+G PG+GKGTQ N+ E F HL+ GD+LR++I G++ G + ++ +G +V ++ +
Sbjct: 10 IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87 KLLQKAMEESG--NDKFLIDGFPR 108
+++ + + + F++ GFPR
Sbjct: 70 NMIKDELTNNPACKNGFILVGFPR 93
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 27 LGGPGSGKGT---QCANIVEHFGYTH-LSAGDLLRA-EIKSGSENGTMI-QNMIKEGK-I 79
+G GSGK T + AN +++ G++ ++A D RA I+ E+ I +IK
Sbjct: 135 VGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA 194
Query: 80 VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI----EPEFVLF 129
P+ V +Q A + G D LID R+E NR + + KI +P V+F
Sbjct: 195 DPAAVAYDAIQHA-KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIF 247
>pdb|1TXO|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A.
pdb|1TXO|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A
Length = 237
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 33 GKGTQCANIV---EHFGYTHL--SAGDLLR-AEIKSGSENGTMIQNMIKEGKIVPSE 83
G GT I+ G H+ S G LLR E+ +++ T +Q ++ EG+I P E
Sbjct: 93 GXGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEE 149
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 27 LGGPGS-GKGTQCANIVEHFGYTHLSAGDLLRA 58
+ GP S GK T I + FG+T+L G + RA
Sbjct: 21 IDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 33 GKGTQCANIV---EHFGYTHL--SAGDLLR-AEIKSGSENGTMIQNMIKEGKIVPSEV 84
G GT I+ G H+ S G LLR E+ +++ T +Q ++ EG+I P E
Sbjct: 116 GMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEA 173
>pdb|4HES|A Chain A, Structure Of A Beta-Lactamase Class A-Like Protein From
Veillonella Parvula.
pdb|4HES|B Chain B, Structure Of A Beta-Lactamase Class A-Like Protein From
Veillonella Parvula.
pdb|4HES|C Chain C, Structure Of A Beta-Lactamase Class A-Like Protein From
Veillonella Parvula.
pdb|4HES|D Chain D, Structure Of A Beta-Lactamase Class A-Like Protein From
Veillonella Parvula.
pdb|4HES|E Chain E, Structure Of A Beta-Lactamase Class A-Like Protein From
Veillonella Parvula
Length = 275
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 129 FFDCSEEEMERR----ILNRNQVRQKLPFSWG 156
F+C + ++ R IL R Q R LPF WG
Sbjct: 181 IFECRDRDVYGREXWNILGRQQFRDILPFYWG 212
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 62 SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK 121
+GS + +N K+ ++P + T +++ ++E G+ ++ F R + A+ A
Sbjct: 54 AGSRPENVRKNRYKD--VLPYDQT-RVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQG 110
Query: 122 IEP-----------EF---VLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM 163
P EF V+ C E E R+ R +++ P G+FC+ ++
Sbjct: 111 PLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLI 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,199,006
Number of Sequences: 62578
Number of extensions: 202903
Number of successful extensions: 620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 51
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)