Query 030176
Match_columns 182
No_of_seqs 108 out of 1361
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079 Uridylate kinase/adeny 99.9 1.1E-24 2.4E-29 158.4 18.6 135 18-152 5-143 (195)
2 PLN02200 adenylate kinase fami 99.9 6.4E-24 1.4E-28 164.0 19.0 138 14-151 36-173 (234)
3 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 8.8E-23 1.9E-27 152.0 18.0 124 23-146 1-126 (183)
4 PRK14531 adenylate kinase; Pro 99.9 9.5E-23 2.1E-27 152.2 18.0 130 22-153 3-135 (183)
5 PRK14532 adenylate kinase; Pro 99.9 2E-22 4.4E-27 150.8 18.3 123 23-145 2-128 (188)
6 PLN02674 adenylate kinase 99.9 1.5E-22 3.2E-27 156.4 16.6 127 19-145 29-159 (244)
7 PRK14527 adenylate kinase; Pro 99.9 4.8E-22 1E-26 149.3 18.9 143 18-162 3-150 (191)
8 PLN02459 probable adenylate ki 99.9 4.3E-22 9.3E-27 154.7 16.3 129 15-145 23-154 (261)
9 PRK14529 adenylate kinase; Pro 99.9 2.6E-22 5.6E-27 153.4 14.4 123 23-145 2-127 (223)
10 PRK14528 adenylate kinase; Pro 99.9 1.8E-21 3.9E-26 145.6 18.7 144 22-165 2-149 (186)
11 PF00406 ADK: Adenylate kinase 99.9 1.3E-21 2.9E-26 141.6 17.4 118 26-143 1-122 (151)
12 PRK13808 adenylate kinase; Pro 99.9 1.9E-21 4.1E-26 155.9 18.2 122 23-144 2-127 (333)
13 TIGR01360 aden_kin_iso1 adenyl 99.9 1.3E-20 2.8E-25 140.7 19.8 144 21-165 3-148 (188)
14 TIGR01351 adk adenylate kinase 99.9 4.6E-21 1E-25 146.0 16.4 122 24-145 2-125 (210)
15 PTZ00088 adenylate kinase 1; P 99.9 7.6E-21 1.7E-25 146.2 16.3 124 20-145 5-131 (229)
16 PRK02496 adk adenylate kinase; 99.9 2.9E-20 6.3E-25 138.8 17.9 128 22-151 2-133 (184)
17 PRK00279 adk adenylate kinase; 99.9 2.5E-20 5.5E-25 142.4 15.5 123 23-145 2-128 (215)
18 cd01428 ADK Adenylate kinase ( 99.8 1.5E-19 3.2E-24 135.6 17.6 123 23-145 1-126 (194)
19 PRK14526 adenylate kinase; Pro 99.8 8.2E-20 1.8E-24 139.0 15.2 121 23-145 2-123 (211)
20 COG0563 Adk Adenylate kinase a 99.8 3.3E-19 7.2E-24 132.2 17.9 128 23-151 2-133 (178)
21 PRK14530 adenylate kinase; Pro 99.8 1.9E-19 4.2E-24 137.6 15.5 120 21-145 3-127 (215)
22 PLN02842 nucleotide kinase 99.8 1E-17 2.2E-22 140.4 14.7 119 26-145 2-122 (505)
23 PRK01184 hypothetical protein; 99.7 8.9E-16 1.9E-20 114.5 17.3 133 22-162 2-140 (184)
24 KOG3078 Adenylate kinase [Nucl 99.7 7.1E-16 1.5E-20 117.4 12.1 125 20-145 14-139 (235)
25 COG1102 Cmk Cytidylate kinase 99.6 7.8E-15 1.7E-19 105.1 12.7 110 22-145 1-112 (179)
26 PRK08356 hypothetical protein; 99.6 8.1E-15 1.7E-19 110.4 11.0 133 22-162 6-153 (195)
27 PRK08118 topology modulation p 99.6 1.3E-14 2.8E-19 106.8 10.2 98 22-145 2-100 (167)
28 PF13671 AAA_33: AAA domain; P 99.6 3.1E-14 6.7E-19 101.6 11.3 129 23-164 1-139 (143)
29 PRK06217 hypothetical protein; 99.6 2.7E-14 5.9E-19 106.5 11.0 104 22-145 2-105 (183)
30 KOG3347 Predicted nucleotide k 99.6 3.4E-14 7.3E-19 100.6 10.1 108 20-145 6-114 (176)
31 PRK06762 hypothetical protein; 99.5 4.5E-13 9.7E-18 98.2 15.2 125 21-162 2-131 (166)
32 PRK13949 shikimate kinase; Pro 99.5 6.6E-13 1.4E-17 97.9 14.9 115 23-150 3-120 (169)
33 PRK03839 putative kinase; Prov 99.5 1.1E-13 2.4E-18 102.8 10.4 99 23-145 2-101 (180)
34 COG1936 Predicted nucleotide k 99.5 2.1E-13 4.5E-18 99.0 10.0 103 22-145 1-104 (180)
35 PRK04040 adenylate kinase; Pro 99.5 1.4E-12 3E-17 97.8 14.7 119 21-143 2-130 (188)
36 PRK00625 shikimate kinase; Pro 99.5 9.8E-13 2.1E-17 97.3 13.3 113 23-145 2-117 (173)
37 COG0703 AroK Shikimate kinase 99.5 1.3E-12 2.8E-17 95.5 12.9 110 22-143 3-114 (172)
38 PRK13973 thymidylate kinase; P 99.5 7.3E-12 1.6E-16 95.6 16.3 122 20-145 2-150 (213)
39 PRK07261 topology modulation p 99.5 4.4E-13 9.6E-18 99.0 8.9 99 23-145 2-100 (171)
40 TIGR02173 cyt_kin_arch cytidyl 99.4 7.9E-12 1.7E-16 91.7 15.1 112 22-145 1-113 (171)
41 PRK14730 coaE dephospho-CoA ki 99.4 2.6E-12 5.6E-17 96.8 12.6 128 22-162 2-158 (195)
42 PRK06547 hypothetical protein; 99.4 4.7E-13 1E-17 98.9 8.3 128 16-145 10-139 (172)
43 PRK08233 hypothetical protein; 99.4 1.7E-12 3.7E-17 96.2 11.2 114 20-145 2-119 (182)
44 cd02021 GntK Gluconate kinase 99.4 5E-12 1.1E-16 91.1 12.7 112 23-145 1-119 (150)
45 PHA02530 pseT polynucleotide k 99.4 1.4E-12 3.1E-17 104.2 10.7 120 21-145 2-124 (300)
46 PRK13948 shikimate kinase; Pro 99.4 8.1E-12 1.8E-16 93.0 13.1 113 19-143 8-122 (182)
47 KOG3354 Gluconate kinase [Carb 99.4 1.4E-12 3E-17 93.0 8.3 120 21-150 12-144 (191)
48 PRK13946 shikimate kinase; Pro 99.4 2E-11 4.2E-16 91.2 14.3 114 20-145 9-124 (184)
49 PRK00081 coaE dephospho-CoA ki 99.4 1.4E-11 3.1E-16 92.8 13.4 128 22-163 3-158 (194)
50 PRK12339 2-phosphoglycerate ki 99.4 2E-11 4.4E-16 92.0 13.9 123 20-146 2-142 (197)
51 cd02022 DPCK Dephospho-coenzym 99.4 9.6E-12 2.1E-16 92.5 11.5 126 23-162 1-154 (179)
52 PRK04182 cytidylate kinase; Pr 99.4 6.5E-12 1.4E-16 92.8 10.4 110 22-145 1-113 (180)
53 PRK09825 idnK D-gluconate kina 99.4 6.3E-12 1.4E-16 93.3 10.3 132 20-163 2-134 (176)
54 PRK00131 aroK shikimate kinase 99.4 7.3E-12 1.6E-16 92.0 10.2 115 19-145 2-118 (175)
55 cd02020 CMPK Cytidine monophos 99.4 9.5E-12 2.1E-16 88.9 10.5 122 23-164 1-122 (147)
56 COG3265 GntK Gluconate kinase 99.4 3.7E-12 8E-17 90.2 8.0 121 27-159 1-126 (161)
57 COG0572 Udk Uridine kinase [Nu 99.4 6.7E-12 1.5E-16 95.0 9.8 133 20-164 7-170 (218)
58 PRK14733 coaE dephospho-CoA ki 99.4 3.6E-11 7.7E-16 91.0 13.8 44 19-62 4-47 (204)
59 cd00227 CPT Chloramphenicol (C 99.4 2.2E-11 4.7E-16 90.2 12.4 121 21-145 2-132 (175)
60 COG0237 CoaE Dephospho-CoA kin 99.4 8.5E-12 1.8E-16 94.2 10.3 43 21-64 2-44 (201)
61 cd00464 SK Shikimate kinase (S 99.4 3.8E-11 8.3E-16 86.6 13.3 110 24-145 2-113 (154)
62 PRK03731 aroL shikimate kinase 99.4 8.6E-11 1.9E-15 86.5 15.4 111 22-145 3-115 (171)
63 COG1428 Deoxynucleoside kinase 99.3 1.1E-11 2.4E-16 92.9 10.5 30 21-50 4-33 (216)
64 COG0283 Cmk Cytidylate kinase 99.3 9.1E-11 2E-15 88.2 15.0 40 22-61 5-44 (222)
65 TIGR00152 dephospho-CoA kinase 99.3 2.3E-11 4.9E-16 91.1 11.6 129 23-164 1-158 (188)
66 PF13207 AAA_17: AAA domain; P 99.3 2.1E-12 4.5E-17 89.7 4.8 105 23-145 1-111 (121)
67 PRK13947 shikimate kinase; Pro 99.3 7.3E-11 1.6E-15 86.8 13.0 111 23-145 3-115 (171)
68 COG1126 GlnQ ABC-type polar am 99.3 2.5E-12 5.5E-17 96.6 5.0 116 15-135 22-165 (240)
69 PRK13975 thymidylate kinase; P 99.3 2.2E-10 4.8E-15 86.0 15.5 110 21-145 2-135 (196)
70 TIGR01313 therm_gnt_kin carboh 99.3 5.3E-11 1.2E-15 86.9 11.8 108 24-145 1-115 (163)
71 PRK13477 bifunctional pantoate 99.3 3.8E-11 8.3E-16 101.8 12.5 47 13-59 276-322 (512)
72 PRK08154 anaerobic benzoate ca 99.3 1.2E-10 2.6E-15 93.7 14.5 120 18-149 130-252 (309)
73 PF01121 CoaE: Dephospho-CoA k 99.3 3.6E-11 7.7E-16 89.4 10.6 127 22-162 1-155 (180)
74 PRK05057 aroK shikimate kinase 99.3 2.4E-10 5.2E-15 84.5 14.7 111 21-144 4-117 (172)
75 TIGR00041 DTMP_kinase thymidyl 99.3 1.5E-10 3.1E-15 86.9 13.6 118 20-145 2-149 (195)
76 PRK14734 coaE dephospho-CoA ki 99.3 1.4E-10 3E-15 87.8 13.5 50 22-72 2-51 (200)
77 cd01672 TMPK Thymidine monopho 99.3 1.8E-10 4E-15 86.1 13.4 118 22-145 1-147 (200)
78 PRK13974 thymidylate kinase; P 99.3 6.8E-11 1.5E-15 90.2 10.8 125 20-144 2-155 (212)
79 COG3842 PotA ABC-type spermidi 99.3 1.4E-12 3.1E-17 105.5 1.4 126 13-143 23-173 (352)
80 PLN02422 dephospho-CoA kinase 99.3 2.6E-10 5.7E-15 87.8 13.8 127 22-162 2-158 (232)
81 PRK14731 coaE dephospho-CoA ki 99.3 1.5E-10 3.3E-15 88.1 12.4 42 20-62 4-45 (208)
82 TIGR00017 cmk cytidylate kinas 99.2 2.3E-10 5.1E-15 87.5 13.2 38 22-59 3-40 (217)
83 PRK14021 bifunctional shikimat 99.2 2E-10 4.3E-15 98.8 14.2 117 19-144 4-123 (542)
84 cd01673 dNK Deoxyribonucleosid 99.2 1.1E-10 2.4E-15 87.6 11.2 117 23-145 1-146 (193)
85 cd02024 NRK1 Nicotinamide ribo 99.2 2E-11 4.3E-16 91.3 6.9 37 23-59 1-38 (187)
86 PF13238 AAA_18: AAA domain; P 99.2 6.6E-12 1.4E-16 87.6 4.1 107 24-145 1-113 (129)
87 COG0645 Predicted kinase [Gene 99.2 9.1E-10 2E-14 79.9 15.0 116 22-145 2-125 (170)
88 PRK11545 gntK gluconate kinase 99.2 5.4E-11 1.2E-15 87.2 8.9 124 27-162 1-125 (163)
89 PRK14732 coaE dephospho-CoA ki 99.2 1E-10 2.2E-15 88.2 10.3 126 23-162 1-154 (196)
90 PRK05541 adenylylsulfate kinas 99.2 2.1E-10 4.6E-15 84.8 11.8 109 18-143 4-121 (176)
91 COG1116 TauB ABC-type nitrate/ 99.2 7.8E-12 1.7E-16 95.9 4.1 120 13-137 21-161 (248)
92 PLN02199 shikimate kinase 99.2 3E-10 6.6E-15 89.8 13.1 113 19-143 100-214 (303)
93 COG2019 AdkA Archaeal adenylat 99.2 5.4E-10 1.2E-14 80.8 13.2 132 21-163 4-148 (189)
94 TIGR01663 PNK-3'Pase polynucle 99.2 6.9E-10 1.5E-14 94.6 16.0 103 17-146 365-470 (526)
95 PRK12338 hypothetical protein; 99.2 4.8E-10 1E-14 89.8 14.2 126 19-146 2-152 (319)
96 PRK05480 uridine/cytidine kina 99.2 1.2E-10 2.5E-15 88.6 10.1 119 19-146 4-148 (209)
97 TIGR03574 selen_PSTK L-seryl-t 99.2 1.8E-10 3.9E-15 89.9 11.2 109 23-145 1-117 (249)
98 COG1127 Ttg2A ABC-type transpo 99.2 4.8E-11 1E-15 91.0 7.6 116 15-134 28-173 (263)
99 PF01583 APS_kinase: Adenylyls 99.2 1.9E-10 4.1E-15 83.3 10.2 112 20-141 1-117 (156)
100 COG3839 MalK ABC-type sugar tr 99.2 1.2E-10 2.5E-15 93.9 10.0 124 15-143 23-170 (338)
101 COG1124 DppF ABC-type dipeptid 99.2 2.7E-11 5.9E-16 92.5 5.8 121 14-142 26-177 (252)
102 cd02030 NDUO42 NADH:Ubiquinone 99.2 5.8E-10 1.3E-14 85.5 13.2 28 23-50 1-28 (219)
103 PLN02924 thymidylate kinase 99.2 5.8E-10 1.3E-14 85.5 13.1 142 19-169 14-176 (220)
104 TIGR00235 udk uridine kinase. 99.2 8.4E-11 1.8E-15 89.3 8.4 117 17-145 2-147 (207)
105 PTZ00451 dephospho-CoA kinase; 99.2 5.5E-10 1.2E-14 86.7 12.9 43 22-64 2-44 (244)
106 PRK00698 tmk thymidylate kinas 99.2 5.5E-10 1.2E-14 84.3 12.6 120 20-145 2-149 (205)
107 COG0529 CysC Adenylylsulfate k 99.2 2.6E-10 5.7E-15 83.2 10.1 117 16-142 18-139 (197)
108 COG0125 Tmk Thymidylate kinase 99.2 2.9E-10 6.2E-15 86.3 10.4 121 20-146 2-150 (208)
109 PRK00023 cmk cytidylate kinase 99.2 1.8E-10 3.8E-15 88.7 9.3 40 20-59 3-42 (225)
110 PRK06696 uridine kinase; Valid 99.2 2.8E-10 6E-15 87.5 9.9 40 18-57 19-63 (223)
111 PRK07667 uridine kinase; Provi 99.2 3.2E-10 6.9E-15 85.3 9.9 41 19-59 15-60 (193)
112 PRK03333 coaE dephospho-CoA ki 99.2 7.7E-10 1.7E-14 91.8 13.0 116 22-144 2-144 (395)
113 PTZ00301 uridine kinase; Provi 99.2 1.4E-10 3E-15 88.3 7.8 115 20-146 2-149 (210)
114 PRK03846 adenylylsulfate kinas 99.1 1.1E-09 2.5E-14 82.6 12.5 109 18-140 21-138 (198)
115 TIGR00455 apsK adenylylsulfate 99.1 2.2E-09 4.7E-14 80.0 13.8 110 17-141 14-133 (184)
116 PRK10078 ribose 1,5-bisphospho 99.1 9.4E-10 2E-14 82.2 11.6 117 21-144 2-131 (186)
117 COG4619 ABC-type uncharacteriz 99.1 7.6E-11 1.7E-15 85.6 5.2 116 14-137 22-164 (223)
118 PF01202 SKI: Shikimate kinase 99.1 1.1E-09 2.3E-14 79.8 11.4 104 30-146 1-107 (158)
119 COG1118 CysA ABC-type sulfate/ 99.1 1.4E-10 3.1E-15 91.3 7.1 126 13-143 20-174 (345)
120 cd02027 APSK Adenosine 5'-phos 99.1 2.5E-09 5.4E-14 77.2 12.9 109 23-143 1-116 (149)
121 PRK13951 bifunctional shikimat 99.1 2E-09 4.4E-14 91.4 13.9 112 23-149 2-115 (488)
122 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 2.2E-10 4.8E-15 88.8 7.0 118 13-134 22-167 (254)
123 COG1120 FepC ABC-type cobalami 99.1 3.8E-11 8.3E-16 93.4 2.4 122 13-135 20-167 (258)
124 PLN02348 phosphoribulokinase 99.1 5.1E-10 1.1E-14 91.7 8.2 132 18-162 46-219 (395)
125 COG1117 PstB ABC-type phosphat 99.1 4E-10 8.8E-15 84.7 6.7 128 14-143 26-197 (253)
126 PF00485 PRK: Phosphoribulokin 99.1 3.4E-10 7.4E-15 85.1 6.3 111 23-146 1-149 (194)
127 PRK00889 adenylylsulfate kinas 99.0 8.4E-09 1.8E-13 76.2 13.0 108 19-141 2-117 (175)
128 PRK15453 phosphoribulokinase; 99.0 2.2E-09 4.7E-14 84.5 10.2 39 19-57 3-46 (290)
129 KOG3877 NADH:ubiquinone oxidor 99.0 4.8E-09 1E-13 81.6 11.6 126 19-146 69-240 (393)
130 PRK07429 phosphoribulokinase; 99.0 2.7E-09 5.9E-14 86.3 10.2 38 19-56 6-46 (327)
131 cd02023 UMPK Uridine monophosp 99.0 2.3E-09 5E-14 80.7 9.1 34 23-56 1-37 (198)
132 cd02028 UMPK_like Uridine mono 99.0 1.3E-09 2.9E-14 81.0 7.3 111 23-145 1-140 (179)
133 COG4088 Predicted nucleotide k 99.0 5.9E-09 1.3E-13 78.1 10.5 114 22-144 2-122 (261)
134 COG1136 SalX ABC-type antimicr 99.0 5.4E-10 1.2E-14 85.4 5.1 39 13-54 23-61 (226)
135 PRK11860 bifunctional 3-phosph 99.0 1.3E-08 2.9E-13 89.6 14.5 41 20-60 441-481 (661)
136 COG4608 AppF ABC-type oligopep 99.0 3.5E-10 7.6E-15 87.9 4.0 107 13-138 31-141 (268)
137 smart00072 GuKc Guanylate kina 99.0 1E-09 2.2E-14 81.9 6.0 117 21-144 2-135 (184)
138 PRK13976 thymidylate kinase; P 99.0 8.5E-09 1.8E-13 78.5 11.1 117 22-144 1-145 (209)
139 PRK09518 bifunctional cytidyla 99.0 1.5E-08 3.3E-13 89.9 14.2 39 22-60 2-40 (712)
140 PF08433 KTI12: Chromatin asso 99.0 4.3E-09 9.4E-14 83.0 9.4 107 22-145 2-120 (270)
141 PRK07933 thymidylate kinase; V 99.0 2.5E-08 5.5E-13 76.2 13.3 118 22-145 1-154 (213)
142 PRK05439 pantothenate kinase; 99.0 4.3E-09 9.3E-14 84.3 9.4 118 18-145 83-238 (311)
143 cd02025 PanK Pantothenate kina 99.0 3E-09 6.6E-14 81.6 8.3 34 23-56 1-41 (220)
144 PHA03132 thymidine kinase; Pro 99.0 1.6E-08 3.4E-13 86.8 13.2 30 20-49 256-285 (580)
145 COG1131 CcmA ABC-type multidru 99.0 2.1E-09 4.5E-14 85.9 7.2 116 14-134 24-164 (293)
146 PRK05537 bifunctional sulfate 98.9 9.7E-09 2.1E-13 88.7 11.6 110 17-142 388-510 (568)
147 TIGR02322 phosphon_PhnN phosph 98.9 1.5E-08 3.3E-13 75.0 11.2 25 22-46 2-26 (179)
148 TIGR00554 panK_bact pantothena 98.9 4.3E-09 9.4E-14 83.7 8.6 28 18-45 59-86 (290)
149 PRK05416 glmZ(sRNA)-inactivati 98.9 1.4E-08 3E-13 80.8 11.4 96 19-144 4-106 (288)
150 PF02223 Thymidylate_kin: Thym 98.9 3.9E-09 8.5E-14 78.7 7.5 132 26-166 1-160 (186)
151 KOG3220 Similar to bacterial d 98.9 8E-08 1.7E-12 71.6 14.0 116 22-145 2-147 (225)
152 PF07931 CPT: Chloramphenicol 98.9 3.6E-08 7.8E-13 72.8 12.2 121 21-145 1-131 (174)
153 PRK09270 nucleoside triphospha 98.9 4.3E-09 9.3E-14 81.2 7.5 29 18-46 30-58 (229)
154 PF06414 Zeta_toxin: Zeta toxi 98.9 1.3E-08 2.9E-13 76.8 10.0 118 19-145 13-142 (199)
155 COG1123 ATPase components of v 98.9 1.5E-09 3.3E-14 91.9 5.2 120 13-136 309-459 (539)
156 COG0396 sufC Cysteine desulfur 98.9 3.2E-09 7E-14 80.7 6.4 116 15-134 24-172 (251)
157 PRK04220 2-phosphoglycerate ki 98.9 4.8E-08 1E-12 77.8 13.3 127 19-148 90-239 (301)
158 COG2274 SunT ABC-type bacterio 98.9 3.7E-09 8.1E-14 93.1 7.7 121 13-137 491-640 (709)
159 PF03668 ATP_bind_2: P-loop AT 98.9 2.2E-08 4.7E-13 78.8 10.9 92 22-143 2-101 (284)
160 PRK00300 gmk guanylate kinase; 98.9 3.2E-08 6.9E-13 74.8 11.2 28 19-46 3-30 (205)
161 COG4555 NatA ABC-type Na+ tran 98.9 3.2E-09 7E-14 79.3 5.6 123 13-136 20-163 (245)
162 PRK12337 2-phosphoglycerate ki 98.9 1.7E-07 3.6E-12 78.5 15.9 43 19-61 253-295 (475)
163 COG4525 TauB ABC-type taurine 98.9 2.5E-09 5.5E-14 79.6 4.5 120 13-137 23-163 (259)
164 COG4639 Predicted kinase [Gene 98.9 5.6E-08 1.2E-12 69.7 11.1 111 21-144 2-117 (168)
165 cd02029 PRK_like Phosphoribulo 98.9 1.7E-08 3.7E-13 79.0 9.2 35 23-57 1-40 (277)
166 TIGR02868 CydC thiol reductant 98.9 8.8E-10 1.9E-14 94.7 2.2 119 15-135 355-499 (529)
167 PRK14738 gmk guanylate kinase; 98.9 9.9E-09 2.1E-13 78.0 7.7 28 17-44 9-36 (206)
168 PRK05506 bifunctional sulfate 98.9 3.9E-08 8.4E-13 86.3 12.4 109 18-141 457-575 (632)
169 cd02026 PRK Phosphoribulokinas 98.9 1.2E-08 2.6E-13 80.8 8.2 34 23-56 1-37 (273)
170 COG0444 DppD ABC-type dipeptid 98.8 5.5E-09 1.2E-13 83.0 5.9 123 14-137 24-184 (316)
171 COG1122 CbiO ABC-type cobalt t 98.8 1.3E-08 2.7E-13 78.8 7.5 117 13-134 22-166 (235)
172 COG1125 OpuBA ABC-type proline 98.8 9.8E-09 2.1E-13 79.3 6.8 121 13-134 19-163 (309)
173 TIGR03263 guanyl_kin guanylate 98.8 5E-08 1.1E-12 72.2 10.1 26 21-46 1-26 (180)
174 PRK11308 dppF dipeptide transp 98.8 1.4E-08 3.1E-13 82.3 7.6 117 14-134 34-182 (327)
175 PHA00729 NTP-binding motif con 98.8 3.7E-08 7.9E-13 75.4 9.3 110 22-145 18-140 (226)
176 COG4175 ProV ABC-type proline/ 98.8 9E-09 1.9E-13 81.7 6.1 120 13-136 46-194 (386)
177 PRK12269 bifunctional cytidyla 98.8 2.2E-07 4.9E-12 83.5 15.7 44 18-61 31-74 (863)
178 cd02019 NK Nucleoside/nucleoti 98.8 1.6E-08 3.5E-13 63.5 6.1 23 23-45 1-23 (69)
179 PRK11650 ugpC glycerol-3-phosp 98.8 5.8E-09 1.3E-13 85.5 5.2 116 14-134 23-162 (356)
180 PRK09544 znuC high-affinity zi 98.8 7.9E-09 1.7E-13 80.8 5.7 116 14-134 23-148 (251)
181 PRK11432 fbpC ferric transport 98.8 2.8E-09 6E-14 87.2 3.2 117 14-135 25-165 (351)
182 COG2884 FtsE Predicted ATPase 98.8 6.8E-10 1.5E-14 82.1 -0.4 121 13-134 20-165 (223)
183 PRK14737 gmk guanylate kinase; 98.8 9.5E-08 2.1E-12 71.5 11.0 28 19-46 2-29 (186)
184 TIGR01188 drrA daunorubicin re 98.8 9.8E-09 2.1E-13 82.4 5.8 117 14-134 12-152 (302)
185 COG1135 AbcC ABC-type metal io 98.8 9.9E-09 2.1E-13 81.1 5.5 119 13-134 24-169 (339)
186 cd03214 ABC_Iron-Siderophores_ 98.8 5.1E-09 1.1E-13 77.8 3.6 107 14-134 18-125 (180)
187 PRK15177 Vi polysaccharide exp 98.8 6.4E-09 1.4E-13 79.4 4.0 117 14-134 6-132 (213)
188 COG4618 ArpD ABC-type protease 98.8 4E-08 8.6E-13 82.2 8.8 120 14-134 355-500 (580)
189 TIGR02314 ABC_MetN D-methionin 98.8 2E-08 4.2E-13 82.0 7.0 116 14-134 24-168 (343)
190 cd03263 ABC_subfamily_A The AB 98.8 9.8E-09 2.1E-13 78.5 5.0 118 13-134 20-161 (220)
191 COG4987 CydC ABC-type transpor 98.8 6.9E-08 1.5E-12 81.3 10.1 130 15-145 358-521 (573)
192 TIGR00960 3a0501s02 Type II (G 98.8 2E-08 4.4E-13 76.5 6.6 31 14-44 22-52 (216)
193 COG3638 ABC-type phosphate/pho 98.8 9.4E-09 2E-13 78.4 4.6 39 14-55 23-61 (258)
194 PRK13538 cytochrome c biogenes 98.8 8.2E-09 1.8E-13 78.2 4.3 32 13-44 19-50 (204)
195 cd03261 ABC_Org_Solvent_Resist 98.8 1.5E-07 3.2E-12 72.8 11.4 117 14-134 19-164 (235)
196 TIGR03575 selen_PSTK_euk L-ser 98.8 7.5E-08 1.6E-12 78.1 10.1 116 23-148 1-126 (340)
197 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 9.3E-09 2E-13 91.0 5.2 117 14-134 472-616 (686)
198 PRK15079 oligopeptide ABC tran 98.8 1E-08 2.2E-13 83.3 5.0 118 13-134 39-189 (331)
199 PRK11174 cysteine/glutathione 98.7 1.3E-09 2.9E-14 94.7 -0.4 115 15-134 370-513 (588)
200 cd03292 ABC_FtsE_transporter F 98.7 2.1E-08 4.5E-13 76.3 6.3 31 14-44 20-50 (214)
201 TIGR03265 PhnT2 putative 2-ami 98.7 1.4E-08 3.1E-13 83.1 5.6 117 14-135 23-163 (353)
202 cd03231 ABC_CcmA_heme_exporter 98.7 1E-08 2.3E-13 77.4 4.5 117 13-134 18-153 (201)
203 cd03225 ABC_cobalt_CbiO_domain 98.7 3.1E-08 6.6E-13 75.3 7.0 30 14-43 20-49 (211)
204 cd03264 ABC_drug_resistance_li 98.7 1.6E-08 3.5E-13 76.8 5.5 116 14-134 19-158 (211)
205 TIGR02673 FtsE cell division A 98.7 2.7E-08 5.9E-13 75.7 6.7 117 14-134 21-165 (214)
206 PRK13537 nodulation ABC transp 98.7 1.5E-08 3.2E-13 81.5 5.4 117 14-134 26-166 (306)
207 COG3840 ThiQ ABC-type thiamine 98.7 1.4E-08 3E-13 74.9 4.7 117 16-137 20-160 (231)
208 cd03228 ABCC_MRP_Like The MRP 98.7 5.9E-09 1.3E-13 76.8 2.9 104 13-134 20-124 (171)
209 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 3.7E-08 7.9E-13 75.7 7.3 117 14-134 41-170 (224)
210 cd03237 ABC_RNaseL_inhibitor_d 98.7 7.5E-09 1.6E-13 80.7 3.5 113 17-134 21-143 (246)
211 cd03262 ABC_HisP_GlnQ_permease 98.7 2.1E-08 4.6E-13 76.2 5.9 30 14-43 19-48 (213)
212 cd03298 ABC_ThiQ_thiamine_tran 98.7 6.3E-09 1.4E-13 79.1 3.0 118 13-134 16-156 (211)
213 cd03250 ABCC_MRP_domain1 Domai 98.7 2.6E-08 5.7E-13 75.3 6.4 119 13-135 23-156 (204)
214 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 2.1E-08 4.5E-13 76.6 5.9 32 13-44 22-53 (218)
215 PF00005 ABC_tran: ABC transpo 98.7 1.4E-09 3.1E-14 76.9 -0.6 30 15-44 5-34 (137)
216 PRK11176 lipid transporter ATP 98.7 7E-09 1.5E-13 90.1 3.6 117 14-134 362-508 (582)
217 cd03226 ABC_cobalt_CbiO_domain 98.7 8.1E-09 1.8E-13 78.2 3.5 115 14-134 19-154 (205)
218 TIGR03258 PhnT 2-aminoethylpho 98.7 1.7E-08 3.7E-13 82.9 5.6 116 14-134 24-165 (362)
219 cd03246 ABCC_Protease_Secretio 98.7 4.9E-09 1.1E-13 77.4 2.2 103 14-134 21-124 (173)
220 cd03266 ABC_NatA_sodium_export 98.7 1.4E-08 3E-13 77.6 4.7 118 13-134 23-164 (218)
221 cd03265 ABC_DrrA DrrA is the A 98.7 1.9E-08 4.2E-13 76.9 5.4 118 13-134 18-159 (220)
222 PRK11264 putative amino-acid A 98.7 1.5E-07 3.2E-12 73.4 10.5 32 13-44 21-52 (250)
223 cd03235 ABC_Metallic_Cations A 98.7 1.1E-08 2.3E-13 78.0 3.9 117 14-134 18-160 (213)
224 PRK10851 sulfate/thiosulfate t 98.7 1E-08 2.2E-13 84.0 4.1 116 14-134 21-164 (353)
225 TIGR03796 NHPM_micro_ABC1 NHPM 98.7 9.1E-09 2E-13 91.4 4.1 116 15-134 499-643 (710)
226 cd03259 ABC_Carb_Solutes_like 98.7 1.3E-08 2.9E-13 77.4 4.4 117 14-134 19-158 (213)
227 COG0194 Gmk Guanylate kinase [ 98.7 9.2E-08 2E-12 70.6 8.6 28 20-47 3-30 (191)
228 PRK09452 potA putrescine/sperm 98.7 1.5E-08 3.1E-13 83.7 4.9 116 14-134 33-172 (375)
229 TIGR01193 bacteriocin_ABC ABC- 98.7 4.1E-09 8.9E-14 93.5 1.7 116 15-134 494-639 (708)
230 cd03293 ABC_NrtD_SsuB_transpor 98.7 2E-08 4.3E-13 76.9 5.3 117 14-134 23-159 (220)
231 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 1.2E-08 2.6E-13 73.3 3.8 81 13-134 18-98 (144)
232 PRK10790 putative multidrug tr 98.7 1.7E-08 3.7E-13 87.9 5.4 120 14-134 360-504 (592)
233 cd03301 ABC_MalK_N The N-termi 98.7 1.6E-08 3.5E-13 76.9 4.6 117 14-134 19-158 (213)
234 TIGR03608 L_ocin_972_ABC putat 98.7 5.8E-09 1.3E-13 78.9 2.1 32 13-44 16-47 (206)
235 TIGR01186 proV glycine betaine 98.7 2.3E-08 4.9E-13 82.1 5.7 117 13-134 11-157 (363)
236 KOG0058 Peptide exporter, ABC 98.7 6.8E-09 1.5E-13 89.8 2.7 120 14-134 487-632 (716)
237 cd03269 ABC_putative_ATPase Th 98.7 3E-08 6.6E-13 75.3 6.0 117 14-134 19-156 (210)
238 COG4167 SapF ABC-type antimicr 98.7 2.3E-08 5.1E-13 73.9 5.1 118 15-136 33-179 (267)
239 cd03258 ABC_MetN_methionine_tr 98.7 2.8E-08 6E-13 76.7 5.8 31 14-44 24-54 (233)
240 PRK11000 maltose/maltodextrin 98.7 9.6E-09 2.1E-13 84.6 3.4 117 14-134 22-161 (369)
241 PRK11607 potG putrescine trans 98.7 1.2E-08 2.6E-13 84.2 3.9 118 14-136 38-179 (377)
242 cd03223 ABCD_peroxisomal_ALDP 98.7 6.6E-09 1.4E-13 76.3 2.1 104 13-137 19-122 (166)
243 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 2.3E-08 4.9E-13 77.4 5.1 117 14-134 20-160 (236)
244 COG4988 CydD ABC-type transpor 98.7 5.6E-08 1.2E-12 82.5 7.8 118 13-134 339-484 (559)
245 TIGR03375 type_I_sec_LssB type 98.7 1.6E-08 3.4E-13 89.7 4.8 116 15-134 485-629 (694)
246 PRK13543 cytochrome c biogenes 98.7 2.7E-08 6E-13 75.9 5.5 30 14-43 30-59 (214)
247 cd03224 ABC_TM1139_LivF_branch 98.7 1.8E-08 3.9E-13 77.1 4.5 30 14-43 19-48 (222)
248 PRK13540 cytochrome c biogenes 98.7 2.8E-08 6E-13 75.0 5.4 116 13-135 19-156 (200)
249 TIGR01194 cyc_pep_trnsptr cycl 98.7 3.9E-08 8.5E-13 85.1 7.0 112 15-134 362-498 (555)
250 cd03247 ABCC_cytochrome_bd The 98.7 2.4E-09 5.1E-14 79.4 -0.5 104 13-134 20-126 (178)
251 TIGR01166 cbiO cobalt transpor 98.7 1.1E-07 2.3E-12 71.2 8.6 30 14-43 11-40 (190)
252 PRK13648 cbiO cobalt transport 98.7 6.3E-08 1.4E-12 76.4 7.6 117 14-134 28-170 (269)
253 TIGR01288 nodI ATP-binding ABC 98.7 2.3E-08 5E-13 80.2 5.2 117 14-134 23-163 (303)
254 PRK10771 thiQ thiamine transpo 98.7 1.6E-08 3.5E-13 78.0 4.1 118 13-134 17-157 (232)
255 PRK13541 cytochrome c biogenes 98.7 1.8E-08 4E-13 75.7 4.3 118 14-136 19-153 (195)
256 cd03296 ABC_CysA_sulfate_impor 98.7 1.4E-08 3E-13 78.7 3.7 117 14-134 21-164 (239)
257 cd03238 ABC_UvrA The excision 98.7 3.5E-08 7.6E-13 73.2 5.7 103 13-134 13-117 (176)
258 cd03230 ABC_DR_subfamily_A Thi 98.7 1.2E-08 2.6E-13 75.3 3.2 101 14-134 19-123 (173)
259 cd03219 ABC_Mj1267_LivG_branch 98.7 4.1E-08 8.8E-13 75.8 6.2 31 13-43 18-48 (236)
260 cd03268 ABC_BcrA_bacitracin_re 98.7 2E-08 4.4E-13 76.1 4.4 30 14-43 19-48 (208)
261 TIGR03522 GldA_ABC_ATP gliding 98.7 2.9E-08 6.3E-13 79.6 5.5 116 15-134 22-161 (301)
262 PRK11153 metN DL-methionine tr 98.7 4.3E-08 9.4E-13 80.0 6.6 118 13-134 23-168 (343)
263 PRK10419 nikE nickel transport 98.7 4.5E-08 9.8E-13 77.2 6.5 31 13-43 30-60 (268)
264 PLN02165 adenylate isopentenyl 98.7 1.4E-07 3E-12 76.1 9.2 39 17-55 39-77 (334)
265 PRK13536 nodulation factor exp 98.7 2.3E-08 5E-13 81.5 4.8 116 15-134 61-200 (340)
266 PRK11160 cysteine/glutathione 98.7 1.2E-08 2.5E-13 88.7 3.2 116 15-134 360-503 (574)
267 cd03218 ABC_YhbG The ABC trans 98.7 3.6E-08 7.9E-13 75.9 5.6 31 13-43 18-48 (232)
268 TIGR02769 nickel_nikE nickel i 98.7 4.9E-08 1.1E-12 76.9 6.4 31 13-43 29-59 (265)
269 cd03222 ABC_RNaseL_inhibitor T 98.7 5.6E-09 1.2E-13 77.5 1.0 79 16-135 20-100 (177)
270 PRK09493 glnQ glutamine ABC tr 98.7 3.6E-07 7.7E-12 70.8 11.2 31 13-43 19-49 (240)
271 PRK13650 cbiO cobalt transport 98.7 1.9E-08 4.1E-13 79.8 4.1 118 13-134 25-168 (279)
272 cd03215 ABC_Carb_Monos_II This 98.7 1.4E-08 3E-13 75.6 3.1 104 15-134 20-132 (182)
273 PRK13647 cbiO cobalt transport 98.7 5.8E-08 1.3E-12 76.9 6.7 117 14-134 24-166 (274)
274 TIGR03410 urea_trans_UrtE urea 98.7 3.7E-08 8.1E-13 75.8 5.5 31 13-43 18-48 (230)
275 PRK14250 phosphate ABC transpo 98.7 2.1E-08 4.4E-13 77.9 4.1 31 13-43 21-51 (241)
276 PRK10247 putative ABC transpor 98.7 5.9E-09 1.3E-13 80.2 1.0 31 13-43 25-55 (225)
277 TIGR03771 anch_rpt_ABC anchore 98.7 5.6E-08 1.2E-12 74.6 6.4 114 17-134 2-141 (223)
278 TIGR00958 3a01208 Conjugate Tr 98.7 7.6E-09 1.7E-13 91.9 1.8 121 14-135 500-646 (711)
279 PRK11247 ssuB aliphatic sulfon 98.7 1.6E-08 3.4E-13 79.4 3.4 114 14-134 31-161 (257)
280 cd03232 ABC_PDR_domain2 The pl 98.7 1.1E-08 2.3E-13 76.8 2.3 105 14-134 26-136 (192)
281 cd03256 ABC_PhnC_transporter A 98.7 2.2E-07 4.9E-12 71.9 9.7 30 14-43 20-49 (241)
282 TIGR02203 MsbA_lipidA lipid A 98.7 3.1E-08 6.6E-13 85.9 5.3 119 15-134 352-497 (571)
283 COG1119 ModF ABC-type molybden 98.7 7.1E-08 1.5E-12 74.1 6.6 29 17-45 53-81 (257)
284 PRK11248 tauB taurine transpor 98.7 3.8E-08 8.3E-13 77.1 5.4 118 13-134 19-156 (255)
285 cd03289 ABCC_CFTR2 The CFTR su 98.7 1.9E-08 4E-13 79.8 3.5 121 13-134 22-166 (275)
286 cd03244 ABCC_MRP_domain2 Domai 98.7 8.3E-09 1.8E-13 78.9 1.5 32 13-44 22-53 (221)
287 TIGR02857 CydD thiol reductant 98.7 9.8E-09 2.1E-13 88.2 2.1 116 15-134 342-486 (529)
288 TIGR01184 ntrCD nitrate transp 98.7 4.1E-08 8.9E-13 75.7 5.3 116 15-134 5-142 (230)
289 PRK11629 lolD lipoprotein tran 98.7 8.6E-08 1.9E-12 74.0 7.1 30 14-43 28-57 (233)
290 PRK10584 putative ABC transpor 98.7 8.1E-08 1.8E-12 73.8 7.0 30 14-43 29-58 (228)
291 PRK11022 dppD dipeptide transp 98.7 1.8E-07 3.9E-12 75.9 9.3 33 13-45 25-57 (326)
292 PRK10908 cell division protein 98.7 1.6E-07 3.5E-12 71.9 8.6 30 14-43 21-50 (222)
293 PRK11124 artP arginine transpo 98.6 2.1E-07 4.5E-12 72.2 9.3 30 14-43 21-50 (242)
294 PRK13546 teichoic acids export 98.6 2.8E-08 6.1E-13 78.3 4.4 118 13-134 42-171 (264)
295 TIGR02211 LolD_lipo_ex lipopro 98.6 1.5E-07 3.3E-12 71.9 8.4 32 13-44 23-54 (221)
296 COG4133 CcmA ABC-type transpor 98.6 4E-08 8.8E-13 72.6 4.8 116 13-137 20-161 (209)
297 PRK13651 cobalt transporter AT 98.6 1.4E-07 3.1E-12 75.8 8.4 30 13-42 25-54 (305)
298 COG1660 Predicted P-loop-conta 98.6 3.1E-07 6.7E-12 71.0 9.8 93 22-143 2-102 (286)
299 PRK10070 glycine betaine trans 98.6 7.7E-08 1.7E-12 79.9 7.0 117 14-134 47-192 (400)
300 COG2074 2-phosphoglycerate kin 98.6 1.9E-06 4.2E-11 66.5 14.0 123 18-145 86-231 (299)
301 PRK13646 cbiO cobalt transport 98.6 2.9E-07 6.3E-12 73.3 10.1 118 13-134 25-173 (286)
302 COG1123 ATPase components of v 98.6 6.3E-08 1.4E-12 82.2 6.5 121 13-135 27-183 (539)
303 PRK13635 cbiO cobalt transport 98.6 7.7E-08 1.7E-12 76.4 6.7 118 13-134 25-168 (279)
304 TIGR02315 ABC_phnC phosphonate 98.6 1.2E-07 2.7E-12 73.5 7.7 31 13-43 20-50 (243)
305 PRK09473 oppD oligopeptide tra 98.6 3.2E-08 6.9E-13 80.4 4.5 32 14-45 35-66 (330)
306 PLN02318 phosphoribulokinase/u 98.6 1.2E-07 2.7E-12 81.4 8.1 37 19-55 63-100 (656)
307 cd03295 ABC_OpuCA_Osmoprotecti 98.6 3E-08 6.5E-13 77.0 4.1 30 14-43 20-49 (242)
308 PRK11144 modC molybdate transp 98.6 7.2E-08 1.6E-12 79.0 6.5 38 13-53 16-53 (352)
309 PRK10895 lipopolysaccharide AB 98.6 1E-07 2.3E-12 73.9 7.1 118 13-134 21-165 (241)
310 cd03294 ABC_Pro_Gly_Bertaine T 98.6 8.9E-08 1.9E-12 75.6 6.8 30 14-43 43-72 (269)
311 TIGR02324 CP_lyasePhnL phospho 98.6 2.7E-07 5.9E-12 70.7 9.3 32 13-44 26-57 (224)
312 PRK13539 cytochrome c biogenes 98.6 1.4E-07 3E-12 71.6 7.5 31 13-43 20-50 (207)
313 KOG0055 Multidrug/pheromone ex 98.6 5.7E-08 1.2E-12 88.6 6.2 120 15-135 1010-1155(1228)
314 PRK15112 antimicrobial peptide 98.6 4.3E-08 9.4E-13 77.3 4.8 32 13-44 31-62 (267)
315 cd03216 ABC_Carb_Monos_I This 98.6 3.5E-08 7.6E-13 72.2 4.0 93 13-134 18-110 (163)
316 PRK13632 cbiO cobalt transport 98.6 9.5E-08 2.1E-12 75.5 6.7 117 14-134 28-170 (271)
317 COG1134 TagH ABC-type polysacc 98.6 4E-08 8.8E-13 75.3 4.4 127 13-144 45-193 (249)
318 COG4152 ABC-type uncharacteriz 98.6 8E-08 1.7E-12 73.9 5.9 116 14-134 21-158 (300)
319 cd03213 ABCG_EPDR ABCG transpo 98.6 1.6E-08 3.5E-13 76.1 2.2 106 13-134 27-139 (194)
320 COG4604 CeuD ABC-type enteroch 98.6 1.8E-08 3.9E-13 75.2 2.3 121 13-137 19-166 (252)
321 cd03369 ABCC_NFT1 Domain 2 of 98.6 4E-08 8.6E-13 74.5 4.3 110 13-134 26-153 (207)
322 PRK13657 cyclic beta-1,2-gluca 98.6 5.4E-08 1.2E-12 84.7 5.7 116 15-134 355-499 (588)
323 PRK10522 multidrug transporter 98.6 6.2E-08 1.3E-12 83.7 6.0 115 15-134 343-477 (547)
324 PRK13637 cbiO cobalt transport 98.6 3.1E-07 6.7E-12 73.2 9.6 118 13-134 25-172 (287)
325 cd03233 ABC_PDR_domain1 The pl 98.6 6.2E-09 1.3E-13 78.8 -0.2 112 13-134 25-146 (202)
326 TIGR02770 nickel_nikD nickel i 98.6 5.8E-08 1.3E-12 74.8 5.2 29 15-43 6-34 (230)
327 TIGR02982 heterocyst_DevA ABC 98.6 1.3E-07 2.9E-12 72.3 7.2 118 13-134 23-169 (220)
328 PRK13643 cbiO cobalt transport 98.6 2.7E-07 5.8E-12 73.6 9.1 118 13-134 24-172 (288)
329 COG1132 MdlB ABC-type multidru 98.6 1.3E-07 2.9E-12 81.9 8.0 120 14-134 348-493 (567)
330 TIGR03005 ectoine_ehuA ectoine 98.6 2.4E-07 5.2E-12 72.3 8.7 31 13-43 18-48 (252)
331 PRK11831 putative ABC transpor 98.6 1.6E-07 3.5E-12 74.1 7.6 30 14-43 26-55 (269)
332 TIGR01277 thiQ thiamine ABC tr 98.6 4.5E-08 9.8E-13 74.5 4.3 118 13-134 16-156 (213)
333 TIGR01189 ccmA heme ABC export 98.6 4.4E-08 9.4E-13 73.8 4.2 31 14-44 19-49 (198)
334 PRK09536 btuD corrinoid ABC tr 98.6 2.4E-08 5.3E-13 83.0 3.0 117 14-134 22-167 (402)
335 cd03229 ABC_Class3 This class 98.6 7.8E-09 1.7E-13 76.7 0.0 108 15-134 20-128 (178)
336 PF08303 tRNA_lig_kinase: tRNA 98.6 1.5E-06 3.2E-11 63.1 11.8 100 24-145 2-119 (168)
337 cd03260 ABC_PstB_phosphate_tra 98.6 7.3E-07 1.6E-11 68.5 11.0 32 14-45 19-50 (227)
338 cd03257 ABC_NikE_OppD_transpor 98.6 3E-07 6.6E-12 70.5 8.9 31 13-43 23-53 (228)
339 TIGR01846 type_I_sec_HlyB type 98.6 3.6E-08 7.7E-13 87.4 4.2 116 15-134 477-621 (694)
340 PRK13634 cbiO cobalt transport 98.6 4.2E-07 9E-12 72.6 9.9 118 13-134 25-173 (290)
341 COG4172 ABC-type uncharacteriz 98.6 3.2E-07 6.9E-12 75.2 9.2 126 15-141 307-461 (534)
342 PRK13652 cbiO cobalt transport 98.6 1.4E-07 3E-12 74.8 7.0 117 14-134 23-165 (277)
343 PRK10575 iron-hydroxamate tran 98.6 1.1E-08 2.4E-13 80.6 0.6 30 14-43 30-59 (265)
344 cd03267 ABC_NatA_like Similar 98.6 4.3E-08 9.2E-13 75.9 3.9 30 14-43 40-69 (236)
345 PF05729 NACHT: NACHT domain 98.6 1.7E-07 3.7E-12 67.7 6.9 141 22-168 1-165 (166)
346 COG4181 Predicted ABC-type tra 98.6 9.9E-08 2.1E-12 69.8 5.3 112 15-135 30-175 (228)
347 TIGR00972 3a0107s01c2 phosphat 98.6 1.6E-07 3.5E-12 73.1 7.0 31 13-43 19-49 (247)
348 PRK10619 histidine/lysine/argi 98.6 9.8E-07 2.1E-11 69.1 11.4 31 14-44 24-54 (257)
349 TIGR03411 urea_trans_UrtD urea 98.6 1.2E-07 2.5E-12 73.6 6.2 31 13-43 20-50 (242)
350 COG4161 ArtP ABC-type arginine 98.6 2.1E-07 4.5E-12 67.6 6.9 115 15-135 22-170 (242)
351 cd03245 ABCC_bacteriocin_expor 98.6 5.1E-08 1.1E-12 74.5 4.0 31 14-44 23-53 (220)
352 COG3845 ABC-type uncharacteriz 98.6 8.3E-08 1.8E-12 80.0 5.4 118 13-134 22-168 (501)
353 PRK13640 cbiO cobalt transport 98.6 5.9E-08 1.3E-12 77.1 4.4 31 14-44 26-56 (282)
354 TIGR03415 ABC_choXWV_ATP choli 98.6 1.7E-07 3.7E-12 77.4 7.2 116 14-134 43-192 (382)
355 TIGR03740 galliderm_ABC gallid 98.6 3.2E-08 7E-13 75.8 2.8 116 14-134 19-152 (223)
356 PRK10938 putative molybdenum t 98.6 1E-07 2.2E-12 81.3 6.0 30 14-43 22-51 (490)
357 PRK13636 cbiO cobalt transport 98.6 1.1E-07 2.4E-12 75.6 5.8 117 14-134 25-169 (283)
358 cd03254 ABCC_Glucan_exporter_l 98.6 2.3E-08 5E-13 76.9 1.8 32 13-44 21-52 (229)
359 PRK13638 cbiO cobalt transport 98.6 3.6E-07 7.7E-12 72.2 8.5 31 13-43 19-49 (271)
360 PRK10253 iron-enterobactin tra 98.6 2.9E-08 6.2E-13 78.2 2.3 31 14-44 26-56 (265)
361 PRK10789 putative multidrug tr 98.6 2.4E-08 5.1E-13 86.7 1.9 116 15-134 335-479 (569)
362 PLN03232 ABC transporter C fam 98.6 4.2E-08 9E-13 93.3 3.6 119 15-134 1256-1399(1495)
363 PLN03130 ABC transporter C fam 98.5 4.8E-08 1E-12 93.3 3.8 119 15-134 1259-1402(1622)
364 TIGR02142 modC_ABC molybdenum 98.5 3.7E-07 8E-12 74.9 8.5 118 13-134 15-159 (354)
365 TIGR01842 type_I_sec_PrtD type 98.5 8E-08 1.7E-12 82.9 4.8 118 14-135 337-483 (544)
366 PRK10636 putative ABC transpor 98.5 8.4E-08 1.8E-12 84.3 5.0 116 15-134 332-458 (638)
367 COG0411 LivG ABC-type branched 98.5 4.3E-08 9.3E-13 75.1 2.6 117 14-134 23-177 (250)
368 PRK13631 cbiO cobalt transport 98.5 2.4E-07 5.3E-12 74.9 7.1 31 14-44 45-75 (320)
369 cd03251 ABCC_MsbA MsbA is an e 98.5 2.5E-07 5.4E-12 71.4 6.8 31 14-44 21-51 (234)
370 cd03297 ABC_ModC_molybdenum_tr 98.5 2E-07 4.3E-12 71.0 6.2 30 13-43 16-45 (214)
371 PRK13548 hmuV hemin importer A 98.5 5.9E-08 1.3E-12 76.1 3.4 30 14-43 21-50 (258)
372 TIGR01978 sufC FeS assembly AT 98.5 3.7E-07 8.1E-12 70.7 7.8 31 13-43 18-48 (243)
373 PRK13641 cbiO cobalt transport 98.5 7.2E-07 1.6E-11 71.1 9.6 118 13-134 25-173 (287)
374 TIGR02323 CP_lyasePhnK phospho 98.5 3.8E-07 8.3E-12 71.2 7.9 32 13-44 21-52 (253)
375 TIGR02204 MsbA_rel ABC transpo 98.5 5E-08 1.1E-12 84.6 3.2 119 15-134 360-504 (576)
376 PRK13644 cbiO cobalt transport 98.5 3.5E-07 7.6E-12 72.4 7.7 118 13-134 20-164 (274)
377 PRK13649 cbiO cobalt transport 98.5 3.9E-07 8.4E-12 72.3 8.0 31 13-43 25-55 (280)
378 PRK11701 phnK phosphonate C-P 98.5 3.9E-07 8.3E-12 71.4 7.9 32 13-44 24-55 (258)
379 PRK11300 livG leucine/isoleuci 98.5 2E-08 4.3E-13 78.5 0.6 30 14-43 24-53 (255)
380 PRK10636 putative ABC transpor 98.5 1.4E-07 3E-12 83.0 5.8 40 13-55 19-58 (638)
381 PTZ00265 multidrug resistance 98.5 4.8E-08 1E-12 92.5 3.2 33 15-47 1188-1220(1466)
382 cd03253 ABCC_ATM1_transporter 98.5 2.5E-08 5.4E-13 77.0 1.1 31 13-43 19-49 (236)
383 TIGR00957 MRP_assoc_pro multi 98.5 7.7E-08 1.7E-12 91.6 4.4 119 15-134 1306-1449(1522)
384 cd00267 ABC_ATPase ABC (ATP-bi 98.5 7E-08 1.5E-12 70.0 3.2 91 14-134 18-108 (157)
385 PRK10261 glutathione transport 98.5 1.4E-07 3.1E-12 82.6 5.7 29 15-43 344-372 (623)
386 PRK13645 cbiO cobalt transport 98.5 5.7E-07 1.2E-11 71.7 8.6 31 14-44 30-60 (289)
387 PRK09700 D-allose transporter 98.5 1.5E-07 3.3E-12 80.6 5.7 118 13-134 23-173 (510)
388 PRK13642 cbiO cobalt transport 98.5 2.3E-07 5E-12 73.5 6.2 118 13-134 25-168 (277)
389 COG4107 PhnK ABC-type phosphon 98.5 2.1E-07 4.6E-12 68.4 5.4 33 13-45 24-56 (258)
390 cd03252 ABCC_Hemolysin The ABC 98.5 8E-08 1.7E-12 74.3 3.4 32 13-44 20-51 (237)
391 PRK14247 phosphate ABC transpo 98.5 2.5E-07 5.4E-12 72.1 6.2 32 13-44 21-52 (250)
392 PRK13633 cobalt transporter AT 98.5 1.6E-07 3.5E-12 74.6 5.2 118 13-134 28-172 (280)
393 KOG0062 ATPase component of AB 98.5 3.4E-07 7.4E-12 76.8 7.2 138 15-168 100-247 (582)
394 PRK15439 autoinducer 2 ABC tra 98.5 8.5E-08 1.8E-12 82.2 3.8 116 14-134 30-168 (510)
395 cd03248 ABCC_TAP TAP, the Tran 98.5 3.3E-07 7.1E-12 70.3 6.7 32 13-44 32-63 (226)
396 TIGR00968 3a0106s01 sulfate AB 98.5 1.6E-07 3.4E-12 72.8 4.9 117 14-134 19-158 (237)
397 KOG0057 Mitochondrial Fe/S clu 98.5 1.6E-07 3.5E-12 79.2 5.2 121 14-135 371-516 (591)
398 PRK10261 glutathione transport 98.5 1.6E-07 3.4E-12 82.4 5.4 33 13-45 34-66 (623)
399 COG1129 MglA ABC-type sugar tr 98.5 9.1E-08 2E-12 80.7 3.7 120 14-137 27-176 (500)
400 PRK10762 D-ribose transporter 98.5 6E-08 1.3E-12 82.9 2.6 117 14-134 23-169 (501)
401 PRK13409 putative ATPase RIL; 98.5 3.4E-07 7.5E-12 79.7 7.3 36 17-55 95-130 (590)
402 COG4598 HisP ABC-type histidin 98.5 2.1E-07 4.5E-12 68.7 4.9 117 16-135 27-181 (256)
403 PRK11231 fecE iron-dicitrate t 98.5 2E-07 4.3E-12 72.9 5.2 30 14-43 21-50 (255)
404 PRK13545 tagH teichoic acids e 98.5 1.1E-07 2.5E-12 80.9 4.1 116 15-134 44-171 (549)
405 cd03299 ABC_ModC_like Archeal 98.5 2.6E-07 5.6E-12 71.5 5.8 117 14-134 18-157 (235)
406 cd03234 ABCG_White The White s 98.5 2.6E-07 5.6E-12 71.0 5.8 31 14-44 26-56 (226)
407 PRK13409 putative ATPase RIL; 98.5 8.2E-08 1.8E-12 83.6 3.3 114 16-134 360-481 (590)
408 PRK15064 ABC transporter ATP-b 98.5 1.5E-07 3.2E-12 81.0 4.9 116 15-134 339-466 (530)
409 PRK11614 livF leucine/isoleuci 98.5 1.2E-07 2.5E-12 73.4 3.7 29 14-42 24-52 (237)
410 PRK15056 manganese/iron transp 98.5 3.6E-07 7.7E-12 72.3 6.6 31 13-43 25-55 (272)
411 PRK10982 galactose/methyl gala 98.5 1.6E-07 3.6E-12 80.0 5.0 117 14-134 17-162 (491)
412 PHA03136 thymidine kinase; Pro 98.5 1.7E-05 3.8E-10 64.8 16.4 45 123-169 191-242 (378)
413 cd03236 ABC_RNaseL_inhibitor_d 98.5 6.8E-07 1.5E-11 70.1 8.1 36 17-55 22-57 (255)
414 COG4136 ABC-type uncharacteriz 98.5 8.7E-08 1.9E-12 68.7 2.8 126 15-142 22-170 (213)
415 KOG0055 Multidrug/pheromone ex 98.5 7.3E-08 1.6E-12 87.9 2.9 119 15-134 373-517 (1228)
416 cd03217 ABC_FeS_Assembly ABC-t 98.5 9E-08 1.9E-12 72.3 3.0 108 13-134 18-132 (200)
417 PTZ00243 ABC transporter; Prov 98.5 1.2E-07 2.6E-12 90.4 4.4 120 15-135 1330-1475(1560)
418 PRK14256 phosphate ABC transpo 98.5 1.7E-06 3.6E-11 67.6 10.2 31 14-44 23-53 (252)
419 COG0410 LivF ABC-type branched 98.5 1.4E-07 3.1E-12 71.8 3.9 39 15-56 23-61 (237)
420 PLN03073 ABC transporter F fam 98.5 9.5E-08 2.1E-12 84.8 3.5 116 15-134 529-655 (718)
421 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 3.3E-07 7.2E-12 70.9 6.1 32 13-44 21-52 (238)
422 PRK13549 xylose transporter AT 98.5 7E-08 1.5E-12 82.6 2.4 117 14-134 24-171 (506)
423 TIGR01192 chvA glucan exporter 98.5 1.6E-07 3.4E-12 81.8 4.6 116 15-134 355-499 (585)
424 COG0488 Uup ATPase components 98.5 1.7E-07 3.7E-12 80.3 4.7 116 15-134 342-467 (530)
425 cd03290 ABCC_SUR1_N The SUR do 98.5 1.6E-07 3.5E-12 71.7 4.1 31 14-44 20-50 (218)
426 PRK13639 cbiO cobalt transport 98.5 9.3E-07 2E-11 70.0 8.4 31 13-43 20-50 (275)
427 PRK14241 phosphate transporter 98.5 4.9E-07 1.1E-11 70.8 6.8 30 14-43 23-52 (258)
428 cd03300 ABC_PotA_N PotA is an 98.5 2.5E-07 5.3E-12 71.4 5.0 31 14-44 19-49 (232)
429 TIGR03873 F420-0_ABC_ATP propo 98.5 1E-07 2.2E-12 74.6 2.9 31 14-44 20-50 (256)
430 PRK14246 phosphate ABC transpo 98.5 3.9E-07 8.5E-12 71.5 6.1 29 15-43 30-58 (257)
431 PRK14242 phosphate transporter 98.5 3.1E-06 6.6E-11 66.1 11.1 30 15-44 26-55 (253)
432 PRK11288 araG L-arabinose tran 98.5 2.1E-07 4.5E-12 79.7 4.8 117 14-134 23-168 (501)
433 COG1072 CoaA Panthothenate kin 98.4 4.8E-07 1E-11 70.7 6.3 29 17-45 78-106 (283)
434 PRK15064 ABC transporter ATP-b 98.4 4.6E-08 1E-12 84.2 0.8 31 13-43 19-49 (530)
435 PRK14267 phosphate ABC transpo 98.4 5.1E-07 1.1E-11 70.5 6.4 31 14-44 23-53 (253)
436 PRK14237 phosphate transporter 98.4 2.9E-06 6.2E-11 66.9 10.7 32 14-45 39-70 (267)
437 PRK10418 nikD nickel transport 98.4 1.8E-07 3.9E-12 73.2 3.7 31 13-43 21-51 (254)
438 PRK10744 pstB phosphate transp 98.4 2.3E-06 4.9E-11 67.2 9.9 31 14-44 32-62 (260)
439 PF01591 6PF2K: 6-phosphofruct 98.4 1.6E-05 3.4E-10 61.0 14.2 125 19-144 10-144 (222)
440 cd03288 ABCC_SUR2 The SUR doma 98.4 2.2E-07 4.7E-12 72.9 4.1 30 15-44 41-70 (257)
441 PRK14251 phosphate ABC transpo 98.4 5.5E-07 1.2E-11 70.2 6.4 31 14-44 23-53 (251)
442 PRK11288 araG L-arabinose tran 98.4 2.2E-07 4.7E-12 79.5 4.4 29 15-43 273-301 (501)
443 PRK09984 phosphonate/organopho 98.4 1.5E-07 3.3E-12 73.9 3.2 33 13-45 22-54 (262)
444 TIGR00954 3a01203 Peroxysomal 98.4 4.2E-07 9E-12 80.2 6.0 116 15-135 472-611 (659)
445 PRK14272 phosphate ABC transpo 98.4 2.8E-06 6E-11 66.3 10.1 31 14-44 23-53 (252)
446 PRK09700 D-allose transporter 98.4 4.6E-07 1E-11 77.7 6.1 29 15-43 283-311 (510)
447 KOG3308 Uncharacterized protei 98.4 1.6E-06 3.4E-11 64.8 8.0 119 20-146 3-150 (225)
448 PRK14245 phosphate ABC transpo 98.4 4.6E-06 1E-10 65.0 11.1 30 14-43 22-51 (250)
449 cd03291 ABCC_CFTR1 The CFTR su 98.4 9.1E-08 2E-12 76.1 1.4 116 15-134 57-187 (282)
450 COG4778 PhnL ABC-type phosphon 98.4 9.9E-07 2.1E-11 64.6 6.6 118 13-136 29-182 (235)
451 PRK11147 ABC transporter ATPas 98.4 3.4E-07 7.3E-12 80.5 5.0 39 13-54 21-59 (635)
452 PRK14273 phosphate ABC transpo 98.4 1.7E-06 3.6E-11 67.7 8.4 31 14-44 26-56 (254)
453 COG0488 Uup ATPase components 98.4 6.1E-07 1.3E-11 76.9 6.4 40 13-55 21-60 (530)
454 TIGR03269 met_CoM_red_A2 methy 98.4 3.8E-07 8.3E-12 78.4 5.2 31 14-44 19-49 (520)
455 PRK14262 phosphate ABC transpo 98.4 3.6E-06 7.9E-11 65.6 10.2 31 13-43 21-51 (250)
456 PRK13547 hmuV hemin importer A 98.4 3E-07 6.4E-12 72.8 4.1 30 14-43 20-49 (272)
457 PRK11147 ABC transporter ATPas 98.4 1.5E-07 3.3E-12 82.6 2.6 116 15-134 339-468 (635)
458 PRK15134 microcin C ABC transp 98.4 3.8E-07 8.3E-12 78.5 4.9 32 13-44 27-58 (529)
459 PRK15093 antimicrobial peptide 98.4 3.3E-07 7.2E-12 74.4 4.2 33 13-45 25-57 (330)
460 PRK14274 phosphate ABC transpo 98.4 1.9E-06 4.1E-11 67.6 8.4 31 15-45 32-62 (259)
461 PLN03232 ABC transporter C fam 98.4 3.5E-07 7.6E-12 87.1 5.0 116 15-134 637-768 (1495)
462 PRK14269 phosphate ABC transpo 98.4 1.1E-06 2.3E-11 68.5 6.8 31 14-44 21-51 (246)
463 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 2.3E-07 5E-12 80.3 3.3 116 15-134 342-471 (552)
464 KOG0066 eIF2-interacting prote 98.4 2.2E-06 4.8E-11 71.2 8.6 113 19-135 611-733 (807)
465 COG4586 ABC-type uncharacteriz 98.4 8.6E-07 1.9E-11 69.3 5.8 37 13-52 42-78 (325)
466 COG3709 Uncharacterized compon 98.4 6.8E-06 1.5E-10 59.5 10.0 27 20-46 4-30 (192)
467 PRK14271 phosphate ABC transpo 98.4 1E-05 2.3E-10 64.1 12.2 30 14-43 40-69 (276)
468 TIGR02633 xylG D-xylose ABC tr 98.4 4.9E-07 1.1E-11 77.3 5.0 117 14-134 20-169 (500)
469 PRK14240 phosphate transporter 98.4 2.4E-06 5.3E-11 66.6 8.5 31 13-43 21-51 (250)
470 PRK14248 phosphate ABC transpo 98.4 1.8E-06 3.8E-11 68.1 7.6 29 15-43 41-69 (268)
471 PLN03130 ABC transporter C fam 98.4 8.5E-07 1.8E-11 84.9 6.8 116 15-134 637-768 (1622)
472 COG4559 ABC-type hemin transpo 98.4 6.7E-07 1.4E-11 67.6 4.8 32 15-46 21-52 (259)
473 PLN02796 D-glycerate 3-kinase 98.3 6.5E-06 1.4E-10 66.9 10.8 28 19-46 98-125 (347)
474 PRK14270 phosphate ABC transpo 98.3 7.3E-06 1.6E-10 63.9 10.9 30 14-43 23-52 (251)
475 PRK15439 autoinducer 2 ABC tra 98.3 2.5E-06 5.5E-11 73.2 9.0 29 15-43 283-311 (510)
476 PRK14268 phosphate ABC transpo 98.3 9.2E-07 2E-11 69.3 5.7 30 14-43 31-60 (258)
477 PRK11819 putative ABC transpor 98.3 6.1E-07 1.3E-11 77.7 5.1 39 13-54 25-63 (556)
478 PRK10762 D-ribose transporter 98.3 7.6E-07 1.6E-11 76.2 5.6 28 15-42 272-299 (501)
479 KOG0061 Transporter, ABC super 98.3 2E-06 4.3E-11 75.3 8.3 160 16-178 51-253 (613)
480 KOG4235 Mitochondrial thymidin 98.3 1.7E-05 3.6E-10 59.2 11.8 27 119-145 149-175 (244)
481 KOG0635 Adenosine 5'-phosphosu 98.3 3.5E-06 7.6E-11 60.3 7.9 117 15-141 25-146 (207)
482 KOG0056 Heavy metal exporter H 98.3 8.6E-07 1.9E-11 74.4 5.5 121 13-134 556-702 (790)
483 PRK14260 phosphate ABC transpo 98.3 7.2E-06 1.6E-10 64.3 10.5 32 13-44 25-56 (259)
484 PRK14249 phosphate ABC transpo 98.3 1.5E-06 3.2E-11 67.9 6.5 31 14-44 23-53 (251)
485 PRK11819 putative ABC transpor 98.3 6.9E-07 1.5E-11 77.4 5.1 116 15-134 344-473 (556)
486 PRK03695 vitamin B12-transport 98.3 2.9E-07 6.3E-12 71.8 2.5 30 14-43 15-44 (248)
487 COG4178 ABC-type uncharacteriz 98.3 2E-06 4.4E-11 74.1 7.7 116 14-135 412-544 (604)
488 TIGR01271 CFTR_protein cystic 98.3 2.9E-07 6.2E-12 87.6 2.8 119 15-134 1239-1381(1490)
489 PRK14259 phosphate ABC transpo 98.3 4.2E-06 9E-11 66.1 9.0 31 14-44 32-62 (269)
490 PRK15134 microcin C ABC transp 98.3 7.5E-07 1.6E-11 76.7 5.1 30 14-43 305-334 (529)
491 PRK14239 phosphate transporter 98.3 3.2E-06 6.9E-11 65.9 8.2 30 14-43 24-53 (252)
492 PLN03211 ABC transporter G-25; 98.3 1.1E-06 2.3E-11 77.6 6.1 119 15-134 88-234 (659)
493 PRK14235 phosphate transporter 98.3 8.6E-06 1.9E-10 64.2 10.7 32 14-45 38-69 (267)
494 TIGR03269 met_CoM_red_A2 methy 98.3 2.8E-06 6.2E-11 73.0 8.5 30 14-43 303-332 (520)
495 PRK14257 phosphate ABC transpo 98.3 2.3E-06 5E-11 69.5 7.3 32 14-45 101-132 (329)
496 PRK14266 phosphate ABC transpo 98.3 1.1E-05 2.4E-10 62.8 10.9 32 13-44 21-52 (250)
497 PRK14236 phosphate transporter 98.3 1.9E-06 4.2E-11 68.1 6.6 30 15-44 45-74 (272)
498 COG4615 PvdE ABC-type sideroph 98.3 3.6E-06 7.8E-11 69.0 8.2 110 17-132 345-474 (546)
499 PRK10982 galactose/methyl gala 98.3 1.8E-06 3.9E-11 73.7 6.8 29 15-43 268-296 (491)
500 PRK06761 hypothetical protein; 98.3 9.8E-06 2.1E-10 64.3 10.4 27 21-47 3-29 (282)
No 1
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.1e-24 Score=158.42 Aligned_cols=135 Identities=58% Similarity=1.040 Sum_probs=124.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (182)
...+++|++.|+|||||-|.|..++++|||.+++.||++++.... +.+.|..+++.+.+|...|.+...++|++.+.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999999998 8999999999999999999999999999999885
Q ss_pred CC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhcc--CCCCC
Q 030176 97 GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQV--RQKLP 152 (182)
Q Consensus 97 ~~-~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~--r~~~~ 152 (182)
.. .+++|||||+...|...|.+.+...+++++|+||+.+++.+|+..|++. |.+|+
T Consensus 85 ~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn 143 (195)
T KOG3079|consen 85 GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDN 143 (195)
T ss_pred CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCc
Confidence 43 4599999999999999999999878999999999999999999999976 55554
No 2
>PLN02200 adenylate kinase family protein
Probab=99.93 E-value=6.4e-24 Score=164.03 Aligned_cols=138 Identities=68% Similarity=1.062 Sum_probs=121.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (182)
..+....+.+|+|+|+|||||||+|+.|++++|+.+++.++++++......+.+..+.+.+..|...+++....++.+.+
T Consensus 36 ~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l 115 (234)
T PLN02200 36 SSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEM 115 (234)
T ss_pred CCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 33445667899999999999999999999999999999999999999888888888888888999999998888888877
Q ss_pred HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKL 151 (182)
Q Consensus 94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~ 151 (182)
......++|+||||+...|+..+....+..||++|+|++|++++.+|+.+|+..|.++
T Consensus 116 ~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd 173 (234)
T PLN02200 116 ESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDD 173 (234)
T ss_pred hcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCC
Confidence 6655678999999999999998887777679999999999999999999997666554
No 3
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.91 E-value=8.8e-23 Score=152.02 Aligned_cols=124 Identities=72% Similarity=1.170 Sum_probs=110.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
+|+|+|+|||||||+|+.|++++|+.+++.+|++++....+...+...++++.++...|++...+++.+.+......++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 48999999999999999999999999999999999998877788888888899999999999999998887765467899
Q ss_pred EeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 103 IDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 103 ldg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
+||||+...|+..+...+. ..|+++|+|++|.+.+.+|+.+|..
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 9999999999888766542 4689999999999999999999864
No 4
>PRK14531 adenylate kinase; Provisional
Probab=99.91 E-value=9.5e-23 Score=152.20 Aligned_cols=130 Identities=31% Similarity=0.558 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
..|+|+|+|||||||+++.|++.+|+.+++.++++++........+...+.++..|...+++.+..++.+.+......++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~ 82 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW 82 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence 46999999999999999999999999999999999999988888888888889999999999999988877766456789
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF 153 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~ 153 (182)
|+||||+...|...+...+ +..++.+|+|++|.+++.+|+..| +|.+|..
T Consensus 83 ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~ 135 (183)
T PRK14531 83 LLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNE 135 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCH
Confidence 9999999999988876643 446788999999999999999998 6655543
No 5
>PRK14532 adenylate kinase; Provisional
Probab=99.91 E-value=2e-22 Score=150.83 Aligned_cols=123 Identities=33% Similarity=0.598 Sum_probs=109.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 101 (182)
.|+|.|+|||||||+|+.|++.+|+.+++.|+++++....+...+..+++.+..|..++++.+.+++.+.+... .+.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 48899999999999999999999999999999999998888888888899888999999999999988887653 35789
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||||+...|+..+...+ +..||++|+|++|.+++.+|+.+|.
T Consensus 82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 9999999999998876543 4568999999999999999999885
No 6
>PLN02674 adenylate kinase
Probab=99.90 E-value=1.5e-22 Score=156.42 Aligned_cols=127 Identities=28% Similarity=0.549 Sum_probs=116.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG- 97 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 97 (182)
+..+.|+|.|+|||||+|+|+.|+++||+.+++.|+++++.+..+...|..+++++..|...|++.+..++.+.+...+
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999987743
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 98 NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..++|+||||+...|...+...+ +..++.+|+|++|.+.+.+|+..|.
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 57899999999999999887664 4579999999999999999999884
No 7
>PRK14527 adenylate kinase; Provisional
Probab=99.90 E-value=4.8e-22 Score=149.31 Aligned_cols=143 Identities=29% Similarity=0.507 Sum_probs=119.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 97 (182)
..++.+|+|+|+|||||||+++.|++++|+.+++.+++++.........+...+.++..+...|++.+..++.+.+.+..
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~ 82 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME 82 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999999999988878888888888888999999999999998887655
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhc--cCCCCCcchHHHHHHH
Q 030176 98 NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQ--VRQKLPFSWGVFCLFI 162 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~--~r~~~~~~~~~~~~~~ 162 (182)
+.++|+||||+...|+..+...+ +..++.+|+|++|.+++.+|+.+|.. +|.+| +.+.+...+
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd--~~~~~~~R~ 150 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDD--NEETVRRRQ 150 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCC--CHHHHHHHH
Confidence 56799999999999987776543 45688899999999999999999974 34443 344444433
No 8
>PLN02459 probable adenylate kinase
Probab=99.89 E-value=4.3e-22 Score=154.66 Aligned_cols=129 Identities=33% Similarity=0.632 Sum_probs=115.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (182)
++....++.|+|.|||||||||+|+.|++.+|+.+++.++++++........+..++.++..|..+|++.+..++.+.+.
T Consensus 23 ~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 23 SLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred CccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence 33334556788999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hc---CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 95 ES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 95 ~~---~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+. ...++|+||||+...|...|.... .++.+|+|++|.+.+.+|+..|.
T Consensus 103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~--~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 103 AGEEEGESGFILDGFPRTVRQAEILEGVT--DIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred cccccCCceEEEeCCCCCHHHHHHHHhcC--CCCEEEEEECCHHHHHHHhhccc
Confidence 52 357899999999999999997653 57899999999999999999774
No 9
>PRK14529 adenylate kinase; Provisional
Probab=99.89 E-value=2.6e-22 Score=153.40 Aligned_cols=123 Identities=28% Similarity=0.594 Sum_probs=113.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
.|+|.|+|||||||+++.|++.|++.+++.++++++....+...+..+++++..+..+|++.+.+++.+.+.+.+..++|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i 81 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence 48899999999999999999999999999999999998888899999999999999999999999999999876578999
Q ss_pred EeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 103 IDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 103 ldg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+||||+...|...+...+ +..|+.+|+|++|.+++.+|+..|.
T Consensus 82 LDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 82 LDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 999999999999886653 4579999999999999999999984
No 10
>PRK14528 adenylate kinase; Provisional
Probab=99.89 E-value=1.8e-21 Score=145.64 Aligned_cols=144 Identities=25% Similarity=0.469 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK 100 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~ 100 (182)
+.|+|+|+|||||||+++.|++.+|+.+++.+++++.....+...+.....++..+...+++.+..++.+.+.+. ...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 458999999999999999999999999999999999999888888888889999999999998888888887663 3568
Q ss_pred EEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176 101 FLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS 165 (182)
Q Consensus 101 ~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (182)
+|+||||+...|...+...+ +..+|.+|+|++|.+.+.+|+..|.......+.+.+.+...++.+
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y 149 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNY 149 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHH
Confidence 99999999999998887654 346999999999999999999998642222233466666666444
No 11
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.89 E-value=1.3e-21 Score=141.61 Aligned_cols=118 Identities=45% Similarity=0.849 Sum_probs=104.7
Q ss_pred EEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcEEEe
Q 030176 26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID 104 (182)
Q Consensus 26 I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ild 104 (182)
|.|||||||||+|+.|++++|+.+++.++++++........+..+++.+.+|..+|++.+.+++...+.+. ...++|+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999998875 67899999
Q ss_pred CCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHh
Q 030176 105 GFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 105 g~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
|||+...|...+...+ ...|+.+|+|++|.+.+.+|+.+
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 9999999999988733 45689999999999999999986
No 12
>PRK13808 adenylate kinase; Provisional
Probab=99.89 E-value=1.9e-21 Score=155.87 Aligned_cols=122 Identities=31% Similarity=0.652 Sum_probs=111.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 101 (182)
.|+|+|||||||||+++.|++.||+.+++.||++++.+......+..+++++..|...|++.+..++.+.+.+. ...+|
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ 81 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF 81 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence 48899999999999999999999999999999999999988889999999999999999999999998888763 35789
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
||||||+...|...|...+ +..||++|+||+|.+++++|+..|
T Consensus 82 ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 82 ILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 9999999999998886654 457999999999999999999987
No 13
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.88 E-value=1.3e-20 Score=140.66 Aligned_cols=144 Identities=42% Similarity=0.772 Sum_probs=113.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN 98 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~ 98 (182)
-++|+|+|+|||||||+|+.|++.+|+.+++.|++++.........+..++..+..+...+.+.+...+.+.+.. ..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 468999999999999999999999999999999999998766666777777777778888888877777776654 345
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS 165 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (182)
.++|+||+|+...|...+.... ..|+++|+|++|.+.+.+|+.+|.........+.+.+...++.+
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~~~-~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~ 148 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFERRI-GPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETY 148 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC-CCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHH
Confidence 7899999999998888886655 35899999999999999999988632222333445555555443
No 14
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.88 E-value=4.6e-21 Score=146.01 Aligned_cols=122 Identities=38% Similarity=0.717 Sum_probs=110.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCCcE
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKF 101 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ 101 (182)
|+|+|+|||||||+|+.|++.+|+.+++.++++++........+..+++.+..+...+++.+.+++.+.+.+. ...++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 7899999999999999999999999999999999998888888888999999999999999999999988762 25789
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||||+...|...+.......++++|+|++|.+.+.+|+..|.
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 99999999999999887764358899999999999999999884
No 15
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.87 E-value=7.6e-21 Score=146.24 Aligned_cols=124 Identities=25% Similarity=0.528 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c-
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S- 96 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~- 96 (182)
.++.|+|+|+|||||||+|+.|++.+|+.+++.|+++++........+..+++++..+...|++.+.+++.+.+.+ .
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 3466999999999999999999999999999999999999988888999999999999999999999999988876 2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
...++|+||||+...|+..+... ..++.+|+|++|.+.+++|+..|.
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKI--TNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence 35789999999999999888654 368999999999999999999774
No 16
>PRK02496 adk adenylate kinase; Provisional
Probab=99.87 E-value=2.9e-20 Score=138.75 Aligned_cols=128 Identities=31% Similarity=0.585 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK 100 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~ 100 (182)
+.++|+|+|||||||+++.|++.+|+.+++.++++++........+...+.++..+...+++....++.+.+.+. ...+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 458999999999999999999999999999999999998888888888888888999999999999998888653 3468
Q ss_pred EEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQVRQKL 151 (182)
Q Consensus 101 ~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~ 151 (182)
+|+||||+...|...+... .+..|+.+|+|++|.+.+.+|+..| ++.++
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd 133 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDD 133 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCC
Confidence 9999999999887766554 3457899999999999999999988 45443
No 17
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.86 E-value=2.5e-20 Score=142.43 Aligned_cols=123 Identities=36% Similarity=0.692 Sum_probs=109.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~ 101 (182)
.|+|+|+|||||||+++.|++.+|+.+++.++++++........+..+.+.+..+...+++.+.+++.+.+.+.. ..++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~ 81 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF 81 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence 589999999999999999999999999999999999988888888889999999999999999999998887643 3489
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||||+...|...+...+ +..++.+|+|++|.+.+++|+..|.
T Consensus 82 VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 82 LLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 9999999999988886543 4568899999999999999999885
No 18
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.85 E-value=1.5e-19 Score=135.64 Aligned_cols=123 Identities=41% Similarity=0.768 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 101 (182)
.|+|+|+|||||||+|+.|++.+|+.+++.++++++........+..+.+.+..+...+++.+..++...+... ...++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 38999999999999999999999999999999999998877778888888888888889998888888887653 35689
Q ss_pred EEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||||+...|+..+..... ..++++|+|++|.+.+.+|+.+|.
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 99999999999998877664 258899999999999999999986
No 19
>PRK14526 adenylate kinase; Provisional
Probab=99.84 E-value=8.2e-20 Score=139.02 Aligned_cols=121 Identities=33% Similarity=0.620 Sum_probs=108.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 101 (182)
.|+|+|+|||||||+++.|++.+++.+++.|+++++........+..+++++..+...|++.+.+++.+.+... ...++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 47899999999999999999999999999999999999888888999999999999999999999999988763 35789
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||||+...|...+..... ...+|+|++|.+++.+|+..|.
T Consensus 82 ilDGfPR~~~Qa~~l~~~~~--~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 82 ILDGFPRNINQAKALDKFLP--NIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred EEECCCCCHHHHHHHHHhcC--CCEEEEEECCHHHHHHHHHCCC
Confidence 99999999999999977543 2367789999999999999885
No 20
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.84 E-value=3.3e-19 Score=132.20 Aligned_cols=128 Identities=32% Similarity=0.608 Sum_probs=114.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC-CcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN-DKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~ 101 (182)
.|+|.|+|||||||+|+.|++.+++++++.+++++.........+...+.++..+..++++.....+.+.+...+. .++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~ 81 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGF 81 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999887542 279
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKL 151 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~ 151 (182)
|+|+||+...|...+.+.+ +...+.++.++++.+.+.+|+..|.. |.+|
T Consensus 82 I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~-r~dd 133 (178)
T COG0563 82 ILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV-REDD 133 (178)
T ss_pred EEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc-cccC
Confidence 9999999999999888764 45789999999999999999998843 4443
No 21
>PRK14530 adenylate kinase; Provisional
Probab=99.83 E-value=1.9e-19 Score=137.55 Aligned_cols=120 Identities=38% Similarity=0.720 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 95 (182)
++.|+|+|+|||||||+++.|++.+|+.+++.++++++... .....+. ..+.+..|...+++....++.+.+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999998872 3333443 45567778889998888888877654
Q ss_pred cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..++|+||||....|+..+.... .++++|+|++|.+.+.+|+..|.
T Consensus 82 --~~~~IldG~pr~~~q~~~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 82 --ADGFVLDGYPRNLEQAEYLESIT--DLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred --CCCEEEcCCCCCHHHHHHHHHhc--CCCEEEEEeCCHHHHHHHHhCCC
Confidence 45799999999999988776543 48899999999999999999874
No 22
>PLN02842 nucleotide kinase
Probab=99.77 E-value=1e-17 Score=140.43 Aligned_cols=119 Identities=35% Similarity=0.733 Sum_probs=107.1
Q ss_pred EEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCCcEEE
Q 030176 26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLI 103 (182)
Q Consensus 26 I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~il 103 (182)
|.|+|||||||+|+.|++.|++.+++.+++++.....+...+..+++++..+...|++.+..++.+.+... ...++|+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL 81 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL 81 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence 79999999999999999999999999999999999888999999999999999999999999998887653 2467999
Q ss_pred eCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 104 DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 104 dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
||||+...|...+.. ....||++|+||+|.+.+.+|+..|.
T Consensus 82 DGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 82 DGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred eCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 999999999887765 34579999999999999999998874
No 23
>PRK01184 hypothetical protein; Provisional
Probab=99.72 E-value=8.9e-16 Score=114.46 Aligned_cols=133 Identities=26% Similarity=0.370 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CC-----hhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GS-----ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 95 (182)
.+|+|+|+|||||||+++ +++++|+.+++.+|++++.... .. ..+........ .+.......++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence 479999999999999987 7899999999999999988642 11 12333332222 12223333444444444
Q ss_pred cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI 162 (182)
Q Consensus 96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (182)
..+..+|+|++ +...+...+.+.+. .+..+|++++|.+.+.+|+.+| .+.++..+.+++....
T Consensus 78 ~~~~~vvidg~-r~~~e~~~~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~ 140 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEYFRKEFP-EDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERD 140 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHHHHHhCC-cccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHH
Confidence 45678999998 67777777766654 3568999999999999999988 4544445566666554
No 24
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.68 E-value=7.1e-16 Score=117.42 Aligned_cols=125 Identities=39% Similarity=0.679 Sum_probs=112.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN 98 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~ 98 (182)
++..+++.|+||+||.|.+..+++.|+..++.++|++++.+...+..+...+.++..+...+++.+..++.+.+... ..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999777777664 56
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.++++||||+...|.+.+.+. +..+|.+|.|.+|++.+.+|+..|.
T Consensus 94 ~~~ildg~Prt~~qa~~l~~~-~~~~d~Vi~l~vp~~~L~~ri~~r~ 139 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLDR-IAQIDLVINLKVPEEVLVDRITGRR 139 (235)
T ss_pred cccccCCCCcchHHHHHHHHc-cCCcceEEEecCCHHHHHHHHhccc
Confidence 789999999999988875443 3468999999999999999999774
No 25
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.64 E-value=7.8e-15 Score=105.15 Aligned_cols=110 Identities=20% Similarity=0.331 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC--HHHHHHHHHHHHHhcCCC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEESGND 99 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~ 99 (182)
++|.|.|+|||||||+++.||+.+|+.+++.|+++++..... |+.+.++..-.+..| +..+.....+... ..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~---gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~---~~ 74 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARER---GMSLEEFSRYAEEDPEIDKEIDRRQKELAK---EG 74 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHc---CCCHHHHHHHHhcCchhhHHHHHHHHHHHH---cC
Confidence 478999999999999999999999999999999999887642 333334322222222 2222233333332 34
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 100 ~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+|++|.-. -++.+ ..+|+.|||.+|.+++.+|+..|.
T Consensus 75 nvVlegrLA-----~Wi~k---~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 75 NVVLEGRLA-----GWIVR---EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred CeEEhhhhH-----HHHhc---cccceEEEEeCcHHHHHHHHHHhc
Confidence 677887411 12322 357899999999999999999884
No 26
>PRK08356 hypothetical protein; Provisional
Probab=99.61 E-value=8.1e-15 Score=110.44 Aligned_cols=133 Identities=22% Similarity=0.258 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-------hhhHH----HHHHHHcCCCCC----HHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-------ENGTM----IQNMIKEGKIVP----SEVTI 86 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~-------~~~~~----~~~~~~~~~~~~----~~~~~ 86 (182)
++|+|+|||||||||+|+.|+ ++|+.+++.++.+++...... ..+.. ..+++..+...+ .+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~ 84 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI 84 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence 679999999999999999995 589999999886543222110 00000 012222222222 23334
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI 162 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (182)
+++.+.+.. ...+++||+ +...|+..+... ...+|++++|.+.+.+|+.+|+..++....+.+++..+.
T Consensus 85 ~~~~~~~~~--~~~ividG~-r~~~q~~~l~~~----~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~ 153 (195)
T PRK08356 85 RLAVDKKRN--CKNIAIDGV-RSRGEVEAIKRM----GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFD 153 (195)
T ss_pred HHHHHHhcc--CCeEEEcCc-CCHHHHHHHHhc----CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 444444422 236899999 999898887652 247899999999999999998644433334566665553
No 27
>PRK08118 topology modulation protein; Reviewed
Probab=99.59 E-value=1.3e-14 Score=106.76 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
+.|+|+|+|||||||+|+.|++.+++++++.|++++... ....+++...+++.+.+.+ ..+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~~---~~w 62 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVKE---DEW 62 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhcC---CCE
Confidence 469999999999999999999999999999988875321 0123444445555554433 479
Q ss_pred EEeCCCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||.+.. ...+ + ..+|.+||||+|.+.+..|+.+|.
T Consensus 63 VidG~~~~~~~~~--l-----~~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 63 IIDGNYGGTMDIR--L-----NAADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred EEeCCcchHHHHH--H-----HhCCEEEEEeCCHHHHHHHHHHHH
Confidence 99995443 3221 1 137999999999999999999985
No 28
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.58 E-value=3.1e-14 Score=101.58 Aligned_cols=129 Identities=20% Similarity=0.341 Sum_probs=81.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-------HHHHHHHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLLQKAMEE 95 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~ 95 (182)
+|+++|+|||||||+++.|++.++..+++.|++........... ..... +.+.+.+...+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~- 68 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPS-----------PSDYIEAEERAYQILNAAIRKALR- 68 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGC-----------CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHccccccc-----------chhHHHHHHHHHHHHHHHHHHHHH-
Confidence 58999999999999999999999999999988766554321110 00111 112233333332
Q ss_pred cCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhhccCC-CCCcchHHHHHHHHH
Q 030176 96 SGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQVRQ-KLPFSWGVFCLFIML 164 (182)
Q Consensus 96 ~~~~~~ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~~~r~-~~~~~~~~~~~~~~~ 164 (182)
.+..+|+|.......++..+.+... .-+..+|+|++|.+++.+|+.+|..... ......+.|..++..
T Consensus 69 -~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (143)
T PF13671_consen 69 -NGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLAR 139 (143)
T ss_dssp -TT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHH
T ss_pred -cCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHh
Confidence 3556788876566666666655542 1134688899999999999999975432 223667777777643
No 29
>PRK06217 hypothetical protein; Validated
Probab=99.57 E-value=2.7e-14 Score=106.52 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
+.|+|+|++||||||+++.|++.+|+.+++.|++++..... .. ....+.+.....+.+.+.. ...+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~--~~~~ 67 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDP--PF----------TTKRPPEERLRLLLEDLRP--REGW 67 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCC--Cc----------cccCCHHHHHHHHHHHHhc--CCCE
Confidence 46999999999999999999999999999999887643210 00 1112333444444444432 3578
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||++.... ..+ ...+|.+|||++|.+++.+|+.+|.
T Consensus 68 vi~G~~~~~~--~~~----~~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 68 VLSGSALGWG--DPL----EPLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred EEEccHHHHH--HHH----HhhCCEEEEEECCHHHHHHHHHcCc
Confidence 9999765321 111 1247889999999999999999986
No 30
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.57 E-value=3.4e-14 Score=100.56 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=80.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
..+.|+|+|.||+||||+|..||+.+|+.++..++++++..-.. .+.. + .-..++++.+.+.|...+.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~------y-~c~i~DEdkv~D~Le~~m~~--- 75 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEE------Y-KCHILDEDKVLDELEPLMIE--- 75 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhccccc------c-cCccccHHHHHHHHHHHHhc---
Confidence 45679999999999999999999999999999999988775421 0000 0 01346678888888888877
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+.|+|.+.-+.=--.+ .|+|++|++|.+.|..|+.+|.
T Consensus 76 Gg~IVDyHgCd~Fperw--------fdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 76 GGNIVDYHGCDFFPERW--------FDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred CCcEEeecccCccchhh--------eeEEEEEecCchHHHHHHHHcC
Confidence 45678864322100112 4789999999999999999996
No 31
>PRK06762 hypothetical protein; Provisional
Probab=99.55 E-value=4.5e-13 Score=98.22 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=75.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
|.+|+|+|+|||||||+++.|++.+ +..+++.|.+.......... ......+.....+...+. .+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~--~g 68 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDG-----------PGNLSIDLIEQLVRYGLG--HC 68 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCC-----------CCCcCHHHHHHHHHHHHh--CC
Confidence 6799999999999999999999999 45567765554332211000 011122223333333332 35
Q ss_pred CcEEEeCCCCCHHHHHH---HHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176 99 DKFLIDGFPRNEENRAA---FEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI 162 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~---l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (182)
..+|+|+......++.. +....+ .+..+|||++|.+++.+|..+|... +.++.+++..+.
T Consensus 69 ~~vild~~~~~~~~~~~~~~l~~~~~-~~~~~v~Ldap~e~~~~R~~~R~~~---~~~~~~~l~~~~ 131 (166)
T PRK06762 69 EFVILEGILNSDRYGPMLKELIHLFR-GNAYTYYFDLSFEETLRRHSTRPKS---HEFGEDDMRRWW 131 (166)
T ss_pred CEEEEchhhccHhHHHHHHHHHHhcC-CCeEEEEEeCCHHHHHHHHhccccc---ccCCHHHHHHHH
Confidence 67888886444333333 333222 3568999999999999999988532 234445555544
No 32
>PRK13949 shikimate kinase; Provisional
Probab=99.53 E-value=6.6e-13 Score=97.91 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=74.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
.|+|+|+|||||||+++.|++.+++.+++.|+++.+.... .....++ ..+.....+...+++.++... ..+|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~--~~~~~~~---~~g~~~fr~~e~~~l~~l~~~---~~~v 74 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK--TVGDIFA---ERGEAVFRELERNMLHEVAEF---EDVV 74 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc--cHHHHHH---HhCHHHHHHHHHHHHHHHHhC---CCEE
Confidence 5899999999999999999999999999999887655432 1222221 123223333444455543212 2344
Q ss_pred E-eC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCC
Q 030176 103 I-DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQK 150 (182)
Q Consensus 103 l-dg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~ 150 (182)
+ .| .+...+....+.+ .+++|||++|.+.+.+|+..+...|+.
T Consensus 75 is~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~ 120 (169)
T PRK13949 75 ISTGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPL 120 (169)
T ss_pred EEcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCC
Confidence 4 44 4455555555532 358999999999999999854334543
No 33
>PRK03839 putative kinase; Provisional
Probab=99.52 E-value=1.1e-13 Score=102.79 Aligned_cols=99 Identities=19% Similarity=0.363 Sum_probs=67.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 101 (182)
+|+|+|+|||||||+++.|++++++.+++.|+++++.. .+....+ ..+.....+...+.. ..+..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v 68 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD--------EMEIDFDKLAYFIEEEFKEKNV 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh--------hhhcCHHHHHHHHHHhccCCCE
Confidence 58999999999999999999999999999999876531 1110000 001112223222222 124568
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||+... + ..++++|+|++|.+.+.+|+.+|.
T Consensus 69 IidG~~~~----------l-~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 69 VLDGHLSH----------L-LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred EEEecccc----------c-cCCCEEEEEECCHHHHHHHHHHcC
Confidence 89996432 1 247899999999999999999884
No 34
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.50 E-value=2.1e-13 Score=98.97 Aligned_cols=103 Identities=18% Similarity=0.328 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 100 (182)
++|+|+|+||+||||+|+.|+ .+|+.++...+++.+....- .+.. ........+.+...+...+. ...
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~-------r~s~~vD~d~~~~~le~~~~---~~~ 69 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDEL-------RKSVIVDVDKLRKRLEELLR---EGS 69 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCc-------cceEEeeHHHHHHHHHHHhc---cCC
Confidence 479999999999999999998 99999999988776653310 0000 00122334444555555442 246
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 101 ~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.|+|++... .+. .+|++|.|.++++.|.+|+++|.
T Consensus 70 ~Ivd~H~~h---------l~~-~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 70 GIVDSHLSH---------LLP-DCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred eEeechhhh---------cCC-CCCEEEEEcCCHHHHHHHHHHcC
Confidence 679986332 122 47999999999999999999994
No 35
>PRK04040 adenylate kinase; Provisional
Probab=99.50 E-value=1.4e-12 Score=97.77 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SG 97 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 97 (182)
+++|+|+|+|||||||+++.|++.+ ++.+++.++++++........ ...++...... ......-.+..+.+.. ..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~-~~~d~~r~l~~-~~~~~~~~~a~~~i~~~~~ 79 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLV-EHRDEMRKLPP-EEQKELQREAAERIAEMAG 79 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCC-CCHHHHhhCCh-hhhHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999 899999999987765532110 00011111111 0001111122222222 23
Q ss_pred CCcEEEeCCCCC-------HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 98 NDKFLIDGFPRN-------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 98 ~~~~ildg~~~~-------~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
+..+|+|++... ...-.+..+ ...|+.+|++++|++.+.+|+.+
T Consensus 80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 80 EGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred CCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhc
Confidence 455889985321 000111112 23689999999999999988885
No 36
>PRK00625 shikimate kinase; Provisional
Probab=99.49 E-value=9.8e-13 Score=97.25 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=68.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
.|+|+|+|||||||+++.|++.+++.+++.|+++.+...... .....+.. ..|.....+.....+.++ .. ...+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~--~~~i~eif~~~Ge~~fr~~E~~~l~~l-~~--~~~V 76 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL--YSSPKEIYQAYGEEGFCREEFLALTSL-PV--IPSI 76 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC--CCCHHHHHHHHCHHHHHHHHHHHHHHh-cc--CCeE
Confidence 589999999999999999999999999999999887654310 00111111 112222222222333332 11 2334
Q ss_pred EEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|..| .+...+.+..+ . ...++|||++|.+.+.+|+.+|.
T Consensus 77 Is~GGg~~~~~e~~~~l----~-~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 77 VALGGGTLMIEPSYAHI----R-NRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred EECCCCccCCHHHHHHH----h-cCCEEEEEECCHHHHHHHHhcCC
Confidence 3333 22333222222 2 23579999999999999999874
No 37
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.48 E-value=1.3e-12 Score=95.51 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
+.|+++|++||||||+.+.||+.|++.++|.|.++.+..+. .....+ -..|+....+.-.+.+.++.... ..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~--sI~eIF---~~~GE~~FR~~E~~vl~~l~~~~--~~V 75 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGM--SIAEIF---EEEGEEGFRRLETEVLKELLEED--NAV 75 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCc--CHHHHH---HHHhHHHHHHHHHHHHHHHhhcC--CeE
Confidence 45899999999999999999999999999999998887652 222222 12244444455555666665442 244
Q ss_pred EEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 102 ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
|-.| .....+.+..+.. --++|||++|.+.+++|+..
T Consensus 76 iaTGGG~v~~~enr~~l~~-----~g~vv~L~~~~e~l~~Rl~~ 114 (172)
T COG0703 76 IATGGGAVLSEENRNLLKK-----RGIVVYLDAPFETLYERLQR 114 (172)
T ss_pred EECCCccccCHHHHHHHHh-----CCeEEEEeCCHHHHHHHhcc
Confidence 3443 3344544544432 22799999999999999993
No 38
>PRK13973 thymidylate kinase; Provisional
Probab=99.46 E-value=7.3e-12 Score=95.63 Aligned_cols=122 Identities=24% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecH--------HHHHHHHHHcCC--hhhHHHHHHHHcCCCCCHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTI 86 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~--------~di~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
++.+|+|.|+.||||||+++.|++.| |+.++.. ++.+++...... ..+.....++... ...+...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 47899999999999999999999999 7776544 566665544311 1111111111100 0111222
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 87 KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+...+. .+..+|.|.|..+ ..+...+.... ...||++|+||+|++++.+|+.+|.
T Consensus 80 ~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 80 EVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 33333333 3567777876421 22333443322 2469999999999999999999885
No 39
>PRK07261 topology modulation protein; Provisional
Probab=99.45 E-value=4.4e-13 Score=98.99 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=71.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
.|+|+|+|||||||+++.|++.+++++++.|++.+.... ...+.+.....+.+.+.+ ..+|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~~wI 62 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------QERDDDDMIADISNFLLK---HDWI 62 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------ccCCHHHHHHHHHHHHhC---CCEE
Confidence 589999999999999999999999998888766432110 112334455555555544 3489
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 103 ldg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+||..........+. ..|.+|+|+.|...+..|+.+|.
T Consensus 63 idg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 63 IDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred EcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHHH
Confidence 999765433222232 35889999999999999999986
No 40
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.44 E-value=7.9e-12 Score=91.70 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 100 (182)
++|+|+|++||||||+++.|++.+|+.+++.++++++..... ...... .........+ ...+...+.+... ....
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~-~~~~~~~i~~~~~--~~~~ 76 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEF-LNYAEENPEI-DKKIDRRIHEIAL--KEKN 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHH-HHHHhcCcHH-HHHHHHHHHHHHh--cCCC
Confidence 379999999999999999999999999999998877765421 111111 1111111100 1122222222221 2346
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 101 ~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+|++|..... + ....++++|++++|.+.+.+|+.+|.
T Consensus 77 ~Vi~g~~~~~-----~---~~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 77 VVLESRLAGW-----I---VREYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred EEEEecccce-----e---ecCCcCEEEEEECCHHHHHHHHHHcc
Confidence 7788853221 1 12236789999999999999999884
No 41
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.44 E-value=2.6e-12 Score=96.83 Aligned_cols=128 Identities=19% Similarity=0.141 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CC-CCCHHH-----------
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GK-IVPSEV----------- 84 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~----------- 84 (182)
++|+|+|++||||||+++.|++.+|+.+++.|++.++....+......+.+.... .. .++...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4799999999999999999999889999999999988887665444333332211 11 122111
Q ss_pred -------HHHHH----HHHHHhc-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCC
Q 030176 85 -------TIKLL----QKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLP 152 (182)
Q Consensus 85 -------~~~~l----~~~l~~~-~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~ 152 (182)
+...+ .+.+... ....+++|- |... ...+....|.+|++++|.+.+++|+.+|+ .
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~------E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~------g 148 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLF------EAKLTDLCSEIWVVDCSPEQQLQRLIKRD------G 148 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhc------CcchHhCCCEEEEEECCHHHHHHHHHHcC------C
Confidence 11111 1112111 123444553 1110 01111236889999999999999999883 3
Q ss_pred cchHHHHHHH
Q 030176 153 FSWGVFCLFI 162 (182)
Q Consensus 153 ~~~~~~~~~~ 162 (182)
.+.+++...+
T Consensus 149 ~s~e~~~~ri 158 (195)
T PRK14730 149 LTEEEAEARI 158 (195)
T ss_pred CCHHHHHHHH
Confidence 4556666655
No 42
>PRK06547 hypothetical protein; Provisional
Probab=99.44 E-value=4.7e-13 Score=98.89 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=73.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCC--CHHHHHHHHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV--PSEVTIKLLQKAM 93 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l 93 (182)
+....+.+|+|+|++||||||+++.|++.++...++.|+++................+...+... +.+..........
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~ 89 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV 89 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence 44567789999999999999999999999999999988876432211111112222222222110 0000000000000
Q ss_pred HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.-.....+|++|..........+.+ ....-+.||+++|.+++.+|+.+|.
T Consensus 90 ~l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred EeCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhcC
Confidence 0012356778986333333222211 1112279999999999999999995
No 43
>PRK08233 hypothetical protein; Provisional
Probab=99.44 E-value=1.7e-12 Score=96.17 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC---HHHHHHHHHHHHHhc
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEES 96 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~ 96 (182)
++.+|+|+|+|||||||+|+.|++.++...+...|..+... .......+...+..+. .+...+.+.......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN-----CPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS 76 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc-----CchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC
Confidence 46899999999999999999999998632221111111000 0011111222222221 112222222222222
Q ss_pred CCCcEEEeCC-CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 97 GNDKFLIDGF-PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 97 ~~~~~ildg~-~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
....+|+|+. ...... +. ..+|++|||++|.+++++|+.+|.
T Consensus 77 ~~~~vivd~~~~~~~~~---~~----~~~d~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 77 NVDYIIVDYPFAYLNSE---MR----QFIDVTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred CceEEEEeeehhhccHH---HH----HHcCEEEEEcCCHHHHHHHHHHHH
Confidence 2234555653 111112 11 126899999999999999988885
No 44
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.43 E-value=5e-12 Score=91.11 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=69.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC----HHHHHH---HHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SEVTIK---LLQKAMEE 95 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~l~~~l~~ 95 (182)
+|+|+|+|||||||+++.|++.++..+++.|++....... .+..+...+ ...... .....+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIA----------KMAAGIPLNDEDRWPWLQALTDALLAKLA- 69 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHH----------HHHcCCCCCccchhhHHHHHHHHHHHHHH-
Confidence 4889999999999999999999999999987775432210 001111111 111111 1111111
Q ss_pred cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+..+|++.-......+..+.......+..+|++++|.+++.+|+.+|.
T Consensus 70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 13456777764455566655655431234468999999999999999884
No 45
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.42 E-value=1.4e-12 Score=104.18 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 99 (182)
+.+|+++|+|||||||+|+.|++.+ ++.+++.|++........ ..+.. .+.........+.....+...+. .+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~ 76 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHG-EWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK 76 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCC-ccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence 4689999999999999999999999 899999877543322211 11000 00000000001111222233322 346
Q ss_pred cEEEeCCCCCHHHHHHHHHHhC-CCCc-EEEEEecCHHHHHHHHHhhh
Q 030176 100 KFLIDGFPRNEENRAAFEAVTK-IEPE-FVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 100 ~~ildg~~~~~~q~~~l~~~~~-~~~~-~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+|+|+.+....++..+..... .... .+|+|++|.+++.+|+.+|.
T Consensus 77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~ 124 (300)
T PHA02530 77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG 124 (300)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC
Confidence 7889998888777776655431 1122 36889999999999999984
No 46
>PRK13948 shikimate kinase; Provisional
Probab=99.41 E-value=8.1e-12 Score=93.03 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
+++..|+|+|++||||||+++.|++.+|+.++|.|.++.+..+. .....+ ...|.....+...+.+.+++.. .
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~--si~~if---~~~Ge~~fR~~E~~~l~~l~~~--~ 80 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGK--SIPEIF---RHLGEAYFRRCEAEVVRRLTRL--D 80 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhC--CHHHHH---HHhCHHHHHHHHHHHHHHHHhc--C
Confidence 45689999999999999999999999999999999887766543 111211 1223333334444555555433 2
Q ss_pred CcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 99 DKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 99 ~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
..+|.- |.+.....+..+.+ -..+|||++|.+.+.+|+..
T Consensus 81 ~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 81 YAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRP 122 (182)
T ss_pred CeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcC
Confidence 233332 23344444444432 23688999999999999954
No 47
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=92.95 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH---h--
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---E-- 95 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~-- 95 (182)
+-+|+++|++||||||+++.|+++|++.+++.||++...+..+ +..|..+.++....+|++... .
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveK----------M~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEK----------MTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHH----------HhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999999999988776653 333544544444444433221 1
Q ss_pred cCCCcEEEeCCCCCHHHHHHHHHHhC-----CCC---cEEEEEecCHHHHHHHHHhhhccCCC
Q 030176 96 SGNDKFLIDGFPRNEENRAAFEAVTK-----IEP---EFVLFFDCSEEEMERRILNRNQVRQK 150 (182)
Q Consensus 96 ~~~~~~ildg~~~~~~q~~~l~~~~~-----~~~---~~vI~ld~~~~~l~~R~~~R~~~r~~ 150 (182)
.++.++|+-.-.....+++-++..+. ..| -.+|+|.++.+++..|+.+|..+-..
T Consensus 82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp 144 (191)
T KOG3354|consen 82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMP 144 (191)
T ss_pred hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCC
Confidence 24577777765455666655555332 112 24777999999999999999654443
No 48
>PRK13946 shikimate kinase; Provisional
Probab=99.39 E-value=2e-11 Score=91.19 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 99 (182)
.+..|+++|++||||||+++.|++.+|+.+++.|.++....+. .....+.. .+.....+...+.+...+.. ..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~--~~~e~~~~---~ge~~~~~~e~~~l~~l~~~--~~ 81 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARM--TIAEIFAA---YGEPEFRDLERRVIARLLKG--GP 81 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCC--CHHHHHHH---HCHHHHHHHHHHHHHHHHhc--CC
Confidence 4567999999999999999999999999999998876555422 22121111 12212222333444444432 23
Q ss_pred cEEEeCC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 100 KFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 100 ~~ildg~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+|..|. ......+..+.. -.++|||++|.+.+.+|+.+|.
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r~ 124 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRRD 124 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCCC
Confidence 4545543 233444444432 2478999999999999999774
No 49
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.39 E-value=1.4e-11 Score=92.75 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CCCCCHHHH-----------
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT----------- 85 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------- 85 (182)
.+|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+.+.... ...++....
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999987 99999999999998876554433333322111 111221111
Q ss_pred -------HHH----HHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176 86 -------IKL----LQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF 153 (182)
Q Consensus 86 -------~~~----l~~~l~~~~-~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~ 153 (182)
... +.+.+.... ...+++|.- .. +...+....|.+|++++|.+.+.+|+.+|+ ..
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-ll------~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~------~~ 148 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIP-LL------FENGLEKLVDRVLVVDAPPETQLERLMARD------GL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-Hh------hcCCchhhCCeEEEEECCHHHHHHHHHHcC------CC
Confidence 111 111111111 235556642 11 111111236899999999999999999883 34
Q ss_pred chHHHHHHHH
Q 030176 154 SWGVFCLFIM 163 (182)
Q Consensus 154 ~~~~~~~~~~ 163 (182)
+.+++...+.
T Consensus 149 s~e~~~~ri~ 158 (194)
T PRK00081 149 SEEEAEAIIA 158 (194)
T ss_pred CHHHHHHHHH
Confidence 5667776664
No 50
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.38 E-value=2e-11 Score=92.02 Aligned_cols=123 Identities=15% Similarity=0.221 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhh----HHHHH-HHHcCCCCCH----------HH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG----TMIQN-MIKEGKIVPS----------EV 84 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~----~~~~~-~~~~~~~~~~----------~~ 84 (182)
.+.+|+|+|+|||||||+++.|++++|+.++..+|++++........+ .+..+ +...+....+ +.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999998887432211 11000 0000111111 11
Q ss_pred HHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe-cCHHHHHHHHHhhhc
Q 030176 85 TIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQ 146 (182)
Q Consensus 85 ~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld-~~~~~l~~R~~~R~~ 146 (182)
+...+...... ..+..+|+|+.......+.... .. .. .++++. .+.+.+.+|+..|..
T Consensus 82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~-~~--~v-~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR-TN--NI-RAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH-hc--Ce-EEEEEEeCCHHHHHHHHHHHhh
Confidence 12222222222 2467888998655555543221 11 22 445554 478888899999963
No 51
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.37 E-value=9.6e-12 Score=92.48 Aligned_cols=126 Identities=20% Similarity=0.188 Sum_probs=76.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcC-----CCCCH---------------
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS--------------- 82 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------------- 82 (182)
+|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+.+..... ..+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999987 999999999999988776554433333322111 11111
Q ss_pred ---HHHHHHHHHHH----HhcCC-CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176 83 ---EVTIKLLQKAM----EESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS 154 (182)
Q Consensus 83 ---~~~~~~l~~~l----~~~~~-~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~ 154 (182)
..+...+.+.+ ..... ..++++.. ...+. .+....|.++++++|.+..++|+.+|+ ..+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~p-lL~e~------~~~~~~D~vv~V~a~~~~ri~Rl~~Rd------~~s 146 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIP-LLFET------GLEKLVDRVIVVDAPPEIQIERLMKRD------GLS 146 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEeh-HhhcC------CcHHhCCeEEEEECCHHHHHHHHHHcC------CCC
Confidence 11112222221 11112 34555642 11111 011135899999999999999999884 345
Q ss_pred hHHHHHHH
Q 030176 155 WGVFCLFI 162 (182)
Q Consensus 155 ~~~~~~~~ 162 (182)
.+++...+
T Consensus 147 ~~~~~~r~ 154 (179)
T cd02022 147 EEEAEARI 154 (179)
T ss_pred HHHHHHHH
Confidence 55555555
No 52
>PRK04182 cytidylate kinase; Provisional
Probab=99.37 E-value=6.5e-12 Score=92.82 Aligned_cols=110 Identities=24% Similarity=0.341 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCC--HHHHHHHHHHHHHhcCC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEESGN 98 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~ 98 (182)
++|+|+|++||||||+++.|++.+|+.+++.+++++..... +..... +...+...+ .......+..... ..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~ 74 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEE----FNKYAEEDPEIDKEIDRRQLEIAE--KE 74 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHH----HHHHhhcCchHHHHHHHHHHHHHh--cC
Confidence 37999999999999999999999999999998888776542 222111 111122122 1222222222221 23
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+|+++..... +. ...++++||+++|.+.+.+|+.+|.
T Consensus 75 ~~~Vi~g~~~~~-----~~---~~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 75 DNVVLEGRLAGW-----MA---KDYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCEEEEEeecce-----Ee---cCCCCEEEEEECCHHHHHHHHHhcc
Confidence 466788732210 11 1126789999999999999999874
No 53
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.37 E-value=6.3e-12 Score=93.26 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-HHHHHHHHHHHHhcCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGN 98 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~ 98 (182)
.+.+++|+|++||||||+++.|+..++...++.+++...........+..+++ ....+. ..+.+..... .....
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~----~~~~~~~~~~~~~~~~~-~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD----EDRLPWLERLNDASYSL-YKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc----ccchHHHHHHHHHHHHH-HhcCC
Confidence 46789999999999999999999999888888776533211100000000000 000111 1112222222 22223
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHH
Q 030176 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM 163 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~ 163 (182)
.++|+-.+ ....++..+ +..+ .+..+|||++|.+.+.+|+.+|.. +..+.+.+..+++
T Consensus 77 ~g~iv~s~-~~~~~R~~~-r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~----~~~~~~vl~~Q~~ 134 (176)
T PRK09825 77 TGFIVCSS-LKKQYRDIL-RKSS-PNVHFLWLDGDYETILARMQRRAG----HFMPPDLLQSQFD 134 (176)
T ss_pred CEEEEEEe-cCHHHHHHH-HhhC-CCEEEEEEeCCHHHHHHHHhcccC----CCCCHHHHHHHHH
Confidence 56666444 344444444 3333 355789999999999999998852 3356777776553
No 54
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.36 E-value=7.3e-12 Score=92.02 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
+++..|+|+|+|||||||+++.|++.+|+.+++.++++....+.. ....+++ .+.....+.....+.++... .
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~--~~~~~~~---~g~~~~~~~~~~~~~~l~~~--~ 74 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKS--IPEIFEE---EGEAAFRELEEEVLAELLAR--H 74 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCC--HHHHHHH---HCHHHHHHHHHHHHHHHHhc--C
Confidence 567899999999999999999999999999999988876543321 1111111 12111123333444444432 2
Q ss_pred CcEEEeCC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+|..+. ......+..+. ...++||+++|.+.+.+|+.+|.
T Consensus 75 ~~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 75 NLVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred CCEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCC
Confidence 23444332 22223333331 13478999999999999998764
No 55
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.36 E-value=9.5e-12 Score=88.94 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=72.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
+|+|+|+|||||||+|+.|++.+|+++++.+.+....... .... .. ....-++.....+.+.. ....+|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~~-~~-~~~~i~~~l~~~~~~~~---~~~~~V 69 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LASE-VA-AIPEVRKALDERQRELA---KKPGIV 69 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHHH-hc-ccHhHHHHHHHHHHHHh---hCCCEE
Confidence 4899999999999999999999999999987443222111 0000 00 00000111222222222 124688
Q ss_pred EeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHH
Q 030176 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIML 164 (182)
Q Consensus 103 ldg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~ 164 (182)
+||...... .....+++||+++|.+.+.+|+.+|...+ .+..+.++....+..
T Consensus 70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~-~~~~~~~~~~~~~~~ 122 (147)
T cd02020 70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAK-GEGVDLEEILAEIIE 122 (147)
T ss_pred EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Confidence 998643210 11236799999999999999999986433 233455665555543
No 56
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=3.7e-12 Score=90.16 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=80.7
Q ss_pred EcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH---HHh--cCCCcE
Q 030176 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA---MEE--SGNDKF 101 (182)
Q Consensus 27 ~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---l~~--~~~~~~ 101 (182)
+|.+||||||++..|++++|..+++.|+++...+-.+ +..|..+.++....+|... +.+ ..+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~K----------M~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEK----------MSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHH----------HhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 5899999999999999999999999999987766543 3445555554444444332 222 233445
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHH
Q 030176 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFC 159 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~ 159 (182)
|+-.-.....+++.++.... + -.+|||+.+.+.+.+|+.+|..+-.+...-..||.
T Consensus 71 vi~CSALKr~YRD~LR~~~~-~-~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa 126 (161)
T COG3265 71 VIACSALKRSYRDLLREANP-G-LRFVYLDGDFDLILERMKARKGHFMPASLLDSQFA 126 (161)
T ss_pred EEecHHHHHHHHHHHhccCC-C-eEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 55554445666666655442 2 24888999999999999999755544443344443
No 57
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.36 E-value=6.7e-12 Score=94.96 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=83.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCc---EecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-- 94 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~---~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-- 94 (182)
++.+|+|+|++||||||+|+.|...|+.. .++.|+++......... +....+...|...-.+++.+.+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~------~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFE------ERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHh------hcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999999843 66777776644332111 11111334444444444443332
Q ss_pred --h----------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh-ccCC
Q 030176 95 --E----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QVRQ 149 (182)
Q Consensus 95 --~----------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~-~~r~ 149 (182)
. .....+|++|+..... +.+++. .|+.||+|+|.+.+..|...|+ +.|.
T Consensus 81 ~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~----~d~kIfvdtd~D~RliRri~RD~~~rg 154 (218)
T COG0572 81 KQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDL----MDLKIFVDTDADVRLIRRIKRDVQERG 154 (218)
T ss_pred HcCCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhh----cCEEEEEeCCccHHHHHHHHHHHHHhC
Confidence 1 1357888999644332 223332 4799999999999999999988 3455
Q ss_pred CCCc-chHHHHHHHHH
Q 030176 150 KLPF-SWGVFCLFIML 164 (182)
Q Consensus 150 ~~~~-~~~~~~~~~~~ 164 (182)
.+.. ..++|....+-
T Consensus 155 ~~~e~vi~qy~~~vkp 170 (218)
T COG0572 155 RDLESVIEQYVKTVRP 170 (218)
T ss_pred CCHHHHHHHHHHhhCh
Confidence 4432 35666654433
No 58
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.35 E-value=3.6e-11 Score=91.01 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=39.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~ 62 (182)
-.|.+|+|+|++||||||+++.|++.+|+.+++.|.+.++....
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~ 47 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK 47 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc
Confidence 45678999999999999999999989999999999998887654
No 59
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.35 E-value=2.2e-11 Score=90.17 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCChhhHHHHHHHHcC--CCCCHH---HHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSE---VTIKLLQKAM 93 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~l~~~l 93 (182)
+++|+|+|+|||||||+++.|++.++. .+++.|++........... . .....++ ...+++ .....+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA-E--GGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc-c--cccccCccCCcccchHHHHHHHHHHHHH
Confidence 578999999999999999999998864 3446655544322110000 0 0000000 001111 1222222222
Q ss_pred Hh--cCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 94 EE--SGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 94 ~~--~~~~~~ildg-~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.. ..+..+|+|. +......+..+....+ .+-+.|++++|.+++.+|+.+|.
T Consensus 79 ~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 79 AAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhcC
Confidence 11 2356777886 4323333333433333 34578889999999999999884
No 60
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.35 E-value=8.5e-12 Score=94.15 Aligned_cols=43 Identities=30% Similarity=0.540 Sum_probs=38.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS 64 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~ 64 (182)
..+|+|||.+||||||+++.+++ +|++.++.|++.++....+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~ 44 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGG 44 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccc
Confidence 46899999999999999998877 99999999999998877653
No 61
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.35 E-value=3.8e-11 Score=86.56 Aligned_cols=110 Identities=20% Similarity=0.295 Sum_probs=65.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI 103 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~il 103 (182)
|+|+|+|||||||+++.|++.+|+.+++.++++...... .....++.. +...-.+...+.+.... . ....+|.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~~~-~-~~~~vi~ 74 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLLLL-T-KENAVIA 74 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHHHh-c-cCCcEEE
Confidence 789999999999999999999999999999887666433 111211111 11111111111222222 1 2233333
Q ss_pred eC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 104 DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 104 dg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+ +......+..+ . ...++||+++|.+.+.+|+.+|+
T Consensus 75 ~g~~~i~~~~~~~~~----~-~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 75 TGGGAVLREENRRLL----L-ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred CCCCccCcHHHHHHH----H-cCCeEEEEeCCHHHHHHHhccCC
Confidence 33 22223222222 1 24589999999999999999875
No 62
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.35 E-value=8.6e-11 Score=86.47 Aligned_cols=111 Identities=18% Similarity=0.308 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
..|+|+|++||||||+++.|++.+|+.+++.|.++....... ....++ ..++....+...+.+. .+. ....+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~--~~~~~~---~~g~~~~~~~e~~~~~-~~~--~~~~v 74 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMT--VAEIVE---REGWAGFRARESAALE-AVT--APSTV 74 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCC--HHHHHH---HHCHHHHHHHHHHHHH-Hhc--CCCeE
Confidence 358899999999999999999999999999988876654321 111111 1121111122223332 221 12233
Q ss_pred EEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|..| ++.....+..+. ..+++|||++|.+.+.+|+..|.
T Consensus 75 i~~ggg~vl~~~~~~~l~-----~~~~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 75 IATGGGIILTEENRHFMR-----NNGIVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred EECCCCccCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHcccc
Confidence 3333 333344443442 24579999999999999998874
No 63
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.1e-11 Score=92.88 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
.++|+|.|+.|+|||||++.||+++|...+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 578999999999999999999999996554
No 64
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.34 E-value=9.1e-11 Score=88.20 Aligned_cols=40 Identities=30% Similarity=0.499 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~ 61 (182)
.+|+|-||+||||||+|+.||++||+.++++|-+++....
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~ 44 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVAL 44 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHH
Confidence 7899999999999999999999999999999999886544
No 65
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.33 E-value=2.3e-11 Score=91.07 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=76.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHH--------------
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSE-------------- 83 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------------- 83 (182)
+|+|+|++||||||+++.|++..|+.+++.|++.++....+......+.+. +.....+...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999988877999999999888777654322222111 1111111111
Q ss_pred --------HHHHHHHHHHHhc--CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176 84 --------VTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF 153 (182)
Q Consensus 84 --------~~~~~l~~~l~~~--~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~ 153 (182)
.+...+.+.+... .+..++++.. ..... .+ ....|.++++++|.+.+.+|+.+|+ ..
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~p-ll~e~--~~----~~~~D~vv~V~~~~~~~~~Rl~~R~------~~ 147 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVP-LLFEN--KL----RSLCDRVIVVDVSPQLQLERLMQRD------NL 147 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEch-HhhhC--Cc----HHhCCEEEEEECCHHHHHHHHHHcC------CC
Confidence 1111122222221 2234555542 22111 11 1125789999999999999999984 34
Q ss_pred chHHHHHHHHH
Q 030176 154 SWGVFCLFIML 164 (182)
Q Consensus 154 ~~~~~~~~~~~ 164 (182)
+.++....+..
T Consensus 148 s~~~~~~r~~~ 158 (188)
T TIGR00152 148 TEEEVQKRLAS 158 (188)
T ss_pred CHHHHHHHHHh
Confidence 55666665533
No 66
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.32 E-value=2.1e-12 Score=89.66 Aligned_cols=105 Identities=30% Similarity=0.508 Sum_probs=60.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC--HHHHHHHHHHHHHh----c
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEE----S 96 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~----~ 96 (182)
+|+|+|+|||||||+|+.|++.+|+.+++.|++++..... ....... .....+.+...+.. .
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI------------ERDDDEREYIDADIDLLDDILEQLQNKP 68 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC------------HGCTTCCHHHHHHHHHHHHHHHHHHETT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc------------ccCcchhhHHHHHHHHHHHHHHhhhccC
Confidence 5899999999999999999999999999999954211110 0011111 11222333333332 2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
....+|+++... . .. .+ ... ..+.+|++++|.+.+.+|+.+|.
T Consensus 69 ~~~~~ii~g~~~-~-~~-~~-~~~--~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 69 DNDNWIIDGSYE-S-EM-EI-RLP--EFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp T--EEEEECCSC-H-CC-HS-CCH--HGGCEEEEEEEEHHHHHHHHHHH
T ss_pred CCCeEEEeCCCc-c-ch-hh-hhh--cCCEEEEEECCCHHHHHHHHHHH
Confidence 456799999322 1 10 11 000 13468889998885555555553
No 67
>PRK13947 shikimate kinase; Provisional
Probab=99.31 E-value=7.3e-11 Score=86.77 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=66.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
.|+|+|+|||||||+++.||+.+|+.+++.|.++....+. .....++ ..+.....+....++..+... ...+|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~--~~~~~~~---~~ge~~~~~~e~~~~~~l~~~--~~~vi 75 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGM--TVAEIFE---KDGEVRFRSEEKLLVKKLARL--KNLVI 75 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCC--cHHHHHH---HhChHHHHHHHHHHHHHHhhc--CCeEE
Confidence 4899999999999999999999999999998876665321 1111111 112111122222333333221 22332
Q ss_pred EeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 103 ldg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
-.| .+........+.+ .+++|||++|.+.+.+|+..|.
T Consensus 76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCCC
Confidence 222 2333444434422 2479999999999999998763
No 68
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=2.5e-12 Score=96.59 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=70.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HHcCChhhHHHHHH--------HHc-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IKSGSENGTMIQNM--------IKE- 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~~~~~~~~~~~~~--------~~~- 76 (182)
+++..++.+++|+||+||||||+.++|. ++..++.|+|..+. .......|+.+|.+ ++|
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN---~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv 98 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLN---GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV 98 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHH---CCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHH
Confidence 4567899999999999999999999997 55545444432221 11112233333332 111
Q ss_pred ------CCCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 77 ------GKIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 77 ------~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
-...+.+.+.+...++|.+.+.... .|.|| ..++|+..+++++..+|++++ +|+|+.
T Consensus 99 ~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARALaM~P~vmL-FDEPTS 165 (240)
T COG1126 99 TLAPVKVKKLSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMDPKVML-FDEPTS 165 (240)
T ss_pred HhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHHcCCCCEEe-ecCCcc
Confidence 0123344444444555544221111 33444 459999999999999998766 999973
No 69
>PRK13975 thymidylate kinase; Provisional
Probab=99.30 E-value=2.2e-10 Score=86.00 Aligned_cols=110 Identities=19% Similarity=0.315 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH-----------HHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV-----------TIK 87 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 87 (182)
+++|+|.|++||||||+++.|+++++... ...+ ...+..+++++..+ ...... ...
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~----------~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~ 70 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTD----------GKIGKLIREILSGS-KCDKETLALLFAADRVEHVK 70 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCC----------ChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998432 1111 11223333332222 111100 011
Q ss_pred HHHHHHHhcCCCcEEEeCCCCC-----------HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 88 LLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 88 ~l~~~l~~~~~~~~ildg~~~~-----------~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+...+. ...+|.|.+... ......+. .....|+++|||++|.+++.+|+..|+
T Consensus 71 ~i~~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~-~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 71 EIEEDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSIN-RYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred HHHHHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 1122221 246788876432 11111121 123469999999999999999999884
No 70
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.30 E-value=5.3e-11 Score=86.93 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=62.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC----HH---HHHHHHHHHHHhc
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SE---VTIKLLQKAMEES 96 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~l~~~l~~~ 96 (182)
|+|+|++||||||+++.|++.++..+++.+++......... ..+.... .. ...+.+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKM----------SAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHH----------HcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 57899999999999999999999999998886432111000 0011011 01 112222222222
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
....++..++ .....+..+. ..+. ...+|||++|.+++.+|+.+|.
T Consensus 70 ~~~~Vi~~t~-~~~~~r~~~~-~~~~-~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 70 NKVGIITCSA-LKRHYRDILR-EAEP-NLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred CCCEEEEecc-cHHHHHHHHH-hcCC-CEEEEEEeCCHHHHHHHHHhcc
Confidence 2233433444 3344444443 2221 2246889999999999999884
No 71
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.30 E-value=3.8e-11 Score=101.78 Aligned_cols=47 Identities=26% Similarity=0.468 Sum_probs=40.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~ 59 (182)
++..-..++.+|+|.||+||||||+++.|+++||+.+++.|++++..
T Consensus 276 DN~~~~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 276 DNVFLMKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred eeeEeccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 44333447789999999999999999999999999999999998875
No 72
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.30 E-value=1.2e-10 Score=93.67 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=74.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 97 (182)
+.++..|+|+|++||||||+++.|++.+|+.+++.+..+.+..+.. ....+.. .+.....+...+.+...+...
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~--i~ei~~~---~G~~~fr~~e~~~l~~ll~~~- 203 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLS--VSEIFAL---YGQEGYRRLERRALERLIAEH- 203 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCC--HHHHHHH---HCHHHHHHHHHHHHHHHHhhC-
Confidence 5677899999999999999999999999999999987766654321 1111111 122222233344455544332
Q ss_pred CCcEEEeC-C--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCC
Q 030176 98 NDKFLIDG-F--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQ 149 (182)
Q Consensus 98 ~~~~ildg-~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~ 149 (182)
. .+|+.. - +........+.. ..++|||++|.+.+.+|+.+|...|+
T Consensus 204 ~-~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~~~rp 252 (309)
T PRK08154 204 E-EMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQGDLRP 252 (309)
T ss_pred C-CEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCCCCCC
Confidence 2 234443 2 222222222221 34799999999999999998754443
No 73
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.29 E-value=3.6e-11 Score=89.44 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CCCCCHH-------------
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSE------------- 83 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------- 83 (182)
.+|+|||..||||||+++.|++ +|+.+++.|.+.++....+......+.+.... ...++..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4799999999999999999876 99999999999888877655433333322111 1112211
Q ss_pred -----HHHHH----HHHHHHhc-CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176 84 -----VTIKL----LQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF 153 (182)
Q Consensus 84 -----~~~~~----l~~~l~~~-~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~ 153 (182)
++..+ +.+.+... ....+++|.- ... ...+....|.+|++.+|.+...+|+.+|+ ..
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~p-LL~------E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~------~~ 146 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEIP-LLF------ESGLEKLCDEVIVVYAPEEIRIKRLMERD------GL 146 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-T-TTT------TTTGGGGSSEEEEEE--HHHHHHHHHHHH------TS
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcc-hhh------hhhHhhhhceEEEEECCHHHHHHHHHhhC------CC
Confidence 11111 12222222 2245666642 111 01112236899999999999999999984 45
Q ss_pred chHHHHHHH
Q 030176 154 SWGVFCLFI 162 (182)
Q Consensus 154 ~~~~~~~~~ 162 (182)
+.+++...+
T Consensus 147 ~~~~~~~ri 155 (180)
T PF01121_consen 147 SEEEAEARI 155 (180)
T ss_dssp THHHHHHHH
T ss_pred cHHHHHHHH
Confidence 566666655
No 74
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.29 E-value=2.4e-10 Score=84.47 Aligned_cols=111 Identities=16% Similarity=0.278 Sum_probs=67.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 100 (182)
...|+|.|++||||||+++.|++.+++.+++.|..+....+. .....++. .+.....+...+.+...... . .
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~--~i~~~~~~---~g~~~fr~~e~~~l~~l~~~--~-~ 75 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA--DIGWVFDV---EGEEGFRDREEKVINELTEK--Q-G 75 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc--CHhHHHHH---hCHHHHHHHHHHHHHHHHhC--C-C
Confidence 457999999999999999999999999999998766554432 22222211 11111112223344443322 2 2
Q ss_pred EEEe-CC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 101 FLID-GF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 101 ~ild-g~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+++. |. +.....+..+.. .+.+|||+.|.+.+++|+..+
T Consensus 76 ~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~ 117 (172)
T PRK05057 76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRD 117 (172)
T ss_pred EEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC
Confidence 3343 22 222333333322 358999999999999999754
No 75
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.28 E-value=1.5e-10 Score=86.94 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=64.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCChhhHHHHHHHHcCC--CCCHH-----------
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSE----------- 83 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~---~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------- 83 (182)
++++|+|.|++||||||+++.|++.++. .++... .......+..+.+++.... .....
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~ 75 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRH 75 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999842 222110 0000112222222211111 11110
Q ss_pred -HHHHHHHHHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHHhhh
Q 030176 84 -VTIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 84 -~~~~~l~~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
...+.+...+ ..+..+|.|.+... ......+...+.. .||++|||++|.+.+++|+..|.
T Consensus 76 ~~~~~~i~~~l--~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 76 EHLEDKIKPAL--AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHHHHH--hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1111122222 23567778864221 1122233333332 39999999999999999999884
No 76
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.28 E-value=1.4e-10 Score=87.79 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQN 72 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~ 72 (182)
.+|+|+|++||||||+++.|+. +|+.+++.|++.++....+......+.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~ 51 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAE 51 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHH
Confidence 4799999999999999999976 8999999999988888766544333333
No 77
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.27 E-value=1.8e-10 Score=86.14 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCC---CCCHHH-------HHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEV-------TIKL 88 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~ 88 (182)
++|+|.|++||||||+++.|++.+ |+.++..... .....+..++.++.... ..+... ....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP------GGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC------CCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999988 5544332110 00011222222222211 011000 0011
Q ss_pred HHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 89 LQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 89 l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+.+.. ..+..+|.|.++.. ......+.... ...|+++|||++|.+++.+|+.+|.
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 147 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARG 147 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1111111 24567888865422 12222332222 2368999999999999999999884
No 78
>PRK13974 thymidylate kinase; Provisional
Probab=99.26 E-value=6.8e-11 Score=90.23 Aligned_cols=125 Identities=25% Similarity=0.358 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCChhhHHHHHHHHcC--CCCCHHHHHHHH------
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTIKLL------ 89 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~--~~di~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l------ 89 (182)
++.+|+|.|++||||||+++.|++.+.-.... ..+++..........|+.+++++... ...++.....++
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999887421100 00111111122345677777766532 122333322222
Q ss_pred ---HHHHHh--cCCCcEEEeCC----------CCC--HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 90 ---QKAMEE--SGNDKFLIDGF----------PRN--EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 90 ---~~~l~~--~~~~~~ildg~----------~~~--~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
...... ..+..+|.|.| ++. ......+.... +..||++|+|++|++++.+|+..|
T Consensus 82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R 155 (212)
T PRK13974 82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR 155 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 111111 23445555544 432 22233443322 346999999999999999999876
No 79
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.26 E-value=1.4e-12 Score=105.47 Aligned_cols=126 Identities=24% Similarity=0.369 Sum_probs=83.2
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------cCChhhHHHHHH-----------HH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------SGSENGTMIQNM-----------IK 75 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------~~~~~~~~~~~~-----------~~ 75 (182)
+-++++.++.++.|.||+||||||+.++|| |+..++.|.|...... .+...++.+|++ +.
T Consensus 23 ~isl~i~~Gef~~lLGPSGcGKTTlLR~IA---Gfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVa 99 (352)
T COG3842 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIA---GFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVA 99 (352)
T ss_pred cceeeecCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhh
Confidence 346678999999999999999999999999 9998888866332222 122334444443 11
Q ss_pred cC----CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 76 EG----KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 76 ~~----~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
.+ ...+++.+.+.+.+++.......+ .+. ....++|+..+++++..+|.+++ ||+|...+-..++.
T Consensus 100 fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~-~~R~p~qLSGGQqQRVALARAL~~~P~vLL-LDEPlSaLD~kLR~ 173 (352)
T COG3842 100 FGLKVRKKLKKAEIKARVEEALELVGLEGF-ADRKPHQLSGGQQQRVALARALVPEPKVLL-LDEPLSALDAKLRE 173 (352)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCchhh-hhhChhhhChHHHHHHHHHHHhhcCcchhh-hcCcccchhHHHHH
Confidence 11 223344455555555544221111 222 33569999999999999998776 99999777766654
No 80
>PLN02422 dephospho-CoA kinase
Probab=99.26 E-value=2.6e-10 Score=87.81 Aligned_cols=127 Identities=21% Similarity=0.165 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHHHH-----------
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSEVT----------- 85 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------- 85 (182)
.+|+|+|++||||||+++.|+ ++|+.+++.|++.++....+...-..+.+. +.....++...+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 379999999999999999997 689999999999988887654321111111 111111221111
Q ss_pred -------HHHHHHHHH----h---cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176 86 -------IKLLQKAME----E---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKL 151 (182)
Q Consensus 86 -------~~~l~~~l~----~---~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~ 151 (182)
...+...+. . .....+++|- |.. +...+....|.+|++++|.+.+++|+.+|+
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL------~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~------ 147 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLL------FETKMDKWTKPVVVVWVDPETQLERLMARD------ 147 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhh------hhcchhhhCCEEEEEECCHHHHHHHHHHcC------
Confidence 111111111 1 1123444443 221 111122236899999999999999999983
Q ss_pred CcchHHHHHHH
Q 030176 152 PFSWGVFCLFI 162 (182)
Q Consensus 152 ~~~~~~~~~~~ 162 (182)
..+.+++...+
T Consensus 148 g~s~eea~~Ri 158 (232)
T PLN02422 148 GLSEEQARNRI 158 (232)
T ss_pred CCCHHHHHHHH
Confidence 34556666665
No 81
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.25 E-value=1.5e-10 Score=88.06 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=35.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~ 62 (182)
.+.+|+|+|++||||||+++.|.+ +|+..++.|.+.++....
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~ 45 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVT 45 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCC
Confidence 457899999999999999999875 899999999887766543
No 82
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.25 E-value=2.3e-10 Score=87.55 Aligned_cols=38 Identities=32% Similarity=0.595 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~ 59 (182)
.+|+|+||+||||||+++.|++++++.+++.|++++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 58999999999999999999999999999999987655
No 83
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.25 E-value=2e-10 Score=98.82 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-HHcCCCCCHHHHHHHHHHHHHhcC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-IKEGKIVPSEVTIKLLQKAMEESG 97 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~ 97 (182)
.+...|+|+|.+||||||+++.||+.+|+.++|.|+.+.+..+ +++.+. ...|+....+...+.+.+.+...
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g------~si~eif~~~Ge~~FR~~E~~~l~~~~~~~- 76 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG------MSIPSYFEEYGEPAFREVEADVVADMLEDF- 76 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC------cCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3456799999999999999999999999999999998777653 233332 23344444555666666655432
Q ss_pred CCcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 98 NDKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 98 ~~~~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
..+|--| .+...+.+..+...+... .++|||++|.+.+.+|+..+
T Consensus 77 -~~VIs~GGG~v~~~~n~~~L~~~~~~~-g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 77 -DGIFSLGGGAPMTPSTQHALASYIAHG-GRVVYLDADPKEAMERANRG 123 (542)
T ss_pred -CeEEECCCchhCCHHHHHHHHHHHhcC-CEEEEEECCHHHHHHHHhCC
Confidence 2333222 334444444443333322 37999999999999999743
No 84
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.25 E-value=1.1e-10 Score=87.56 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=62.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH--H--HHHH---HHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS--E--VTIK---LLQKAMEE 95 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~---~l~~~l~~ 95 (182)
+|+|.|++||||||+++.|++.+++..+....- .....+..+..++........ + .... .+.+....
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~------~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE------PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccc------ccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999888654433210 000000001111111000000 0 0011 11111110
Q ss_pred -cCCCcEEEeCCCCCHH---------------HHH---HHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 96 -SGNDKFLIDGFPRNEE---------------NRA---AFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 96 -~~~~~~ildg~~~~~~---------------q~~---~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+..+|.|.++.... +.. .+...+ ...||++|||++|++++.+|+.+|+
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1457888998654310 111 111112 2369999999999999999999884
No 85
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.24 E-value=2e-11 Score=91.25 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=32.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAE 59 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~ 59 (182)
+|+|+|++||||||+|+.|++.+ +...++.|+++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~ 38 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE 38 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence 58999999999999999999998 57888888876643
No 86
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.24 E-value=6.6e-12 Score=87.59 Aligned_cols=107 Identities=28% Similarity=0.396 Sum_probs=56.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC-ChhhHHHHHHHHcCCCCCHHHHHHH---HHHHHH-hcCC
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SENGTMIQNMIKEGKIVPSEVTIKL---LQKAME-ESGN 98 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~-~~~~ 98 (182)
|+|+|++||||||+++.|++.++ +.+.+..... ...................+....+ +.+... ....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 78999999999999999999982 2222222211 1111100000111223333332222 222222 2456
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEE-EEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~v-I~ld~~~~~l~~R~~~R~ 145 (182)
..+|+|++...... ....... |+|++|.+++.+|+.+|.
T Consensus 74 ~~~iid~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 74 RNIIIDGILSNLEL--------ERLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp SCEEEEESSEEECE--------TTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred CcEEEecccchhcc--------cccceeeEEEEECCHHHHHHHHHhCC
Confidence 77889986432110 0011223 889999999999999883
No 87
>COG0645 Predicted kinase [General function prediction only]
Probab=99.24 E-value=9.1e-10 Score=79.92 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH--HHHHHHH----HHHHHh
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS--EVTIKLL----QKAMEE 95 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l----~~~l~~ 95 (182)
.++++.|.||+||||+++.|++.+|...+..|++.+.... .+..... ..+...+. +.+...+ ...+
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g-~p~~~r~-----~~g~ys~~~~~~vy~~l~~~A~l~l-- 73 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG-VPEETRG-----PAGLYSPAATAAVYDELLGRAELLL-- 73 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC-CcccccC-----CCCCCcHHHHHHHHHHHHHHHHHHH--
Confidence 5789999999999999999999999999999777666554 1111000 00111111 1112222 2222
Q ss_pred cCCCcEEEeCCCCCHHHHHHHHHHhCCC--CcEEEEEecCHHHHHHHHHhhh
Q 030176 96 SGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~--~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+..+|+|.-.....++...+...... +..+|++++|.+++..|+.+|.
T Consensus 74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~ 125 (170)
T COG0645 74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARK 125 (170)
T ss_pred hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhC
Confidence 3467788998767777776665554222 4567889999999999999995
No 88
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.24 E-value=5.4e-11 Score=87.20 Aligned_cols=124 Identities=11% Similarity=0.120 Sum_probs=65.9
Q ss_pred EcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-HHHHHHHHHHHHhcCCCcEEEeC
Q 030176 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGNDKFLIDG 105 (182)
Q Consensus 27 ~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ildg 105 (182)
+|++||||||+++.|++.+|..+++.+.+...........+..+++. ...+. ........... ...+..+|+-.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~viv~s 75 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD----DRKPWLQALNDAAFAMQ-RTNKVSLIVCS 75 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh----hHHHHHHHHHHHHHHHH-HcCCceEEEEe
Confidence 59999999999999999999988888654321111110011100000 00000 01111111111 12233444422
Q ss_pred CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176 106 FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI 162 (182)
Q Consensus 106 ~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (182)
+ ....++..+.. .+ .+..+||+++|.+++.+|+.+|.. +..+.+.+..++
T Consensus 76 ~-~~~~~r~~~~~-~~-~~~~~v~l~a~~~~l~~Rl~~R~~----~~a~~~vl~~Q~ 125 (163)
T PRK11545 76 A-LKKHYRDLLRE-GN-PNLSFIYLKGDFDVIESRLKARKG----HFFKTQMLVTQF 125 (163)
T ss_pred c-chHHHHHHHHc-cC-CCEEEEEEECCHHHHHHHHHhccC----CCCCHHHHHHHH
Confidence 2 33444443433 32 355789999999999999999953 223555555544
No 89
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.23 E-value=1e-10 Score=88.22 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=73.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHH--------------
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSE-------------- 83 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------------- 83 (182)
+|+|+|++||||||+++.|+ .+|+..++.|++.++....+...-..+.+. +.....++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 48999999999999999885 579999999999888776554322222211 1111111111
Q ss_pred ----HHHHHH----HHHHHh-cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176 84 ----VTIKLL----QKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS 154 (182)
Q Consensus 84 ----~~~~~l----~~~l~~-~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~ 154 (182)
++...+ .+.+.. .....+++|. |...+ ..+....|.+|++++|.+...+|+.+|+ ..+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E------~~~~~~~D~vi~V~a~~e~r~~RL~~R~------g~s 146 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV-PLLFE------TDAYTLCDATVTVDSDPEESILRTISRD------GMK 146 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe-eeeeE------cCchhhCCEEEEEECCHHHHHHHHHHcC------CCC
Confidence 111111 111111 1223444443 22111 0111135899999999999999999883 345
Q ss_pred hHHHHHHH
Q 030176 155 WGVFCLFI 162 (182)
Q Consensus 155 ~~~~~~~~ 162 (182)
.+++...+
T Consensus 147 ~e~a~~ri 154 (196)
T PRK14732 147 KEDVLARI 154 (196)
T ss_pred HHHHHHHH
Confidence 66666665
No 90
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.23 E-value=2.1e-10 Score=84.84 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=64.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH----HHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----VTIKL 88 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 88 (182)
.++|.+|+|+|++||||||+++.|++.+. ...++.+. +++..... +.....+ .....
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~-------------~~~~~~~~~~~~~~~~ 69 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHY-------------GYDKQSRIEMALKRAK 69 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCC-------------CCCHHHHHHHHHHHHH
Confidence 35778999999999999999999999885 44555444 33332211 1000111 11112
Q ss_pred HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
+.+.+. ..+..+|+++... ........+... .+.++|||++|.+++.+|..+
T Consensus 70 l~~~l~-~~g~~VI~~~~~~-~~~~~~~~~~~~-~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 70 LAKFLA-DQGMIVIVTTISM-FDEIYAYNRKHL-PNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HHHHHH-hCCCEEEEEeCCc-HHHHHHHHHhhc-CCeEEEEEeCCHHHHHHhchh
Confidence 222222 2356777887532 222222323232 356889999999999999864
No 91
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=7.8e-12 Score=95.94 Aligned_cols=120 Identities=23% Similarity=0.336 Sum_probs=75.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---cCChhhHHHHHH-----------HHcCC
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGSENGTMIQNM-----------IKEGK 78 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~---~~~~~~~~~~~~-----------~~~~~ 78 (182)
+-+++..++.++.|.||+|||||||.+.+| |+...+.|.+...... +..+.+..+|++ +.-+-
T Consensus 21 ~i~L~v~~GEfvsilGpSGcGKSTLLriiA---GL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l 97 (248)
T COG1116 21 DINLSVEKGEFVAILGPSGCGKSTLLRLIA---GLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGL 97 (248)
T ss_pred cceeEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehh
Confidence 345677899999999999999999999999 8887777765443322 223333333221 11110
Q ss_pred C---CCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 79 I---VPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 79 ~---~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
. .+.....+...+.+...+..++ -+.|| ..++|+..+++++..+|++++ +|+|+..|
T Consensus 98 ~~~~~~~~e~~~~a~~~L~~VgL~~~-~~~~P~qLSGGMrQRVaiARAL~~~P~lLL-lDEPFgAL 161 (248)
T COG1116 98 ELRGKSKAEARERAKELLELVGLAGF-EDKYPHQLSGGMRQRVAIARALATRPKLLL-LDEPFGAL 161 (248)
T ss_pred hccccchHhHHHHHHHHHHHcCCcch-hhcCccccChHHHHHHHHHHHHhcCCCEEE-EcCCcchh
Confidence 0 2222233344444444332222 34454 359999999999999998777 99998433
No 92
>PLN02199 shikimate kinase
Probab=99.23 E-value=3e-10 Score=89.80 Aligned_cols=113 Identities=18% Similarity=0.253 Sum_probs=73.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
.++..|+|+|.+||||||+++.|++.+|+.++|.|.++.+... +......+. ..|+....+...+.+.++... .
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~---~~GE~~FR~~E~e~L~~L~~~--~ 173 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFV---HHGENFFRGKETDALKKLSSR--Y 173 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHH---HhCHHHHHHHHHHHHHHHHhc--C
Confidence 4567899999999999999999999999999999998888643 222322222 224334444455555555433 2
Q ss_pred CcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 99 DKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 99 ~~~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
..+|--| .+....-+..+ . -.++|||++|.+.+.+|+..
T Consensus 174 ~~VIStGGG~V~~~~n~~~L-~-----~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 174 QVVVSTGGGAVIRPINWKYM-H-----KGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred CEEEECCCcccCCHHHHHHH-h-----CCeEEEEECCHHHHHHHHhh
Confidence 2333222 22233333322 1 13799999999999999985
No 93
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.23 E-value=5.4e-10 Score=80.81 Aligned_cols=132 Identities=19% Similarity=0.174 Sum_probs=81.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SG 97 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~ 97 (182)
+++++++|.||+||||+++.+.+.+ ++..++.|+++.+........ .. ...-+.+|.+....+..+...+ ..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glv-e~----rD~~Rklp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLV-EH----RDEMRKLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCc-cc----HHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999988 888899999987765532110 00 0111235555544444443332 11
Q ss_pred CCcEEEeCCC----------CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHH
Q 030176 98 NDKFLIDGFP----------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM 163 (182)
Q Consensus 98 ~~~~ildg~~----------~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~ 163 (182)
...+|+|++. ..... ..+. .+||+++.+.++++.+..|..+. ..|..|..+.++..+.+.
T Consensus 79 ~~~iivDtH~~IkTP~GylpgLP~~---Vl~~--l~pd~ivllEaDp~~Il~RR~~D-~~r~Rd~es~e~i~eHqe 148 (189)
T COG2019 79 ALEIIVDTHATIKTPAGYLPGLPSW---VLEE--LNPDVIVLLEADPEEILERRLRD-SRRDRDVESVEEIREHQE 148 (189)
T ss_pred hhceEEeccceecCCCccCCCCcHH---HHHh--cCCCEEEEEeCCHHHHHHHHhcc-cccccccccHHHHHHHHH
Confidence 1226677542 22221 1122 37999999999998888777654 345555566665555543
No 94
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.22 E-value=6.9e-10 Score=94.59 Aligned_cols=103 Identities=22% Similarity=0.396 Sum_probs=75.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (182)
...++.+|+++|+|||||||+++.+++..|+.+++.|++-. .+.....+.+.+..
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~~- 419 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALDQ- 419 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHhC-
Confidence 34677899999999999999999999999999999976510 11233445555544
Q ss_pred CCCcEEEeCCCCCHHHHHHH---HHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 97 GNDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l---~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
+..+|+|.......++..+ ++..+. +-.++++++|.+++++|+..|..
T Consensus 420 -G~sVVIDaTn~~~~~R~~~i~lAk~~gv-~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 -GKRCAIDNTNPDAASRAKFLQCARAAGI-PCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred -CCcEEEECCCCCHHHHHHHHHHHHHcCC-eEEEEEeCCCHHHHHHHHHhhcc
Confidence 5677888865665555444 444444 44688899999999999999863
No 95
>PRK12338 hypothetical protein; Provisional
Probab=99.22 E-value=4.8e-10 Score=89.82 Aligned_cols=126 Identities=18% Similarity=0.290 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC--C----hhhHHHHHHHH---cCCCC-C-------
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--S----ENGTMIQNMIK---EGKIV-P------- 81 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~--~----~~~~~~~~~~~---~~~~~-~------- 81 (182)
.+|.+|+|+|+|||||||+|+.||+.+|+.++..+|.+++....- . ....+..++.. ..... +
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 457899999999999999999999999999987788888876631 1 11111111111 11000 1
Q ss_pred -----HHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHHhhhc
Q 030176 82 -----SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 82 -----~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
.+.+...+...+.. ..+..+|++|.-........ ...... ... .+++..+.+..++|+..|..
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~-~~~~~~~~v~-~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI-EQFEENASIH-FFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh-hhhcccCceE-EEEEECCHHHHHHHHHHhhh
Confidence 12233333334433 35678999996333322221 111111 222 33366899999999999864
No 96
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.22 E-value=1.2e-10 Score=88.61 Aligned_cols=119 Identities=20% Similarity=0.287 Sum_probs=66.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 95 (182)
.++.+|+|+|++|||||||++.|++.++ ...++.|+.+....... ..............++.+...+.+..+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLS--FEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCC--HHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 5678999999999999999999999883 34456655543221100 000000000000112222333333322211
Q ss_pred ----------------------cCCCcEEEeCCCCCH-HHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 96 ----------------------SGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 96 ----------------------~~~~~~ildg~~~~~-~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
.....+|+||..... ..... ..|++||+++|.+.+++|+.+|..
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~-------~~d~~I~v~~~~~~~~~R~~~Rd~ 148 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRD-------LMDIKIFVDTPLDIRLIRRLKRDV 148 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhh-------hhceeEEEeCChhHHHHHHHhhcc
Confidence 112356777743321 11111 258899999999999999999863
No 97
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.21 E-value=1.8e-10 Score=89.88 Aligned_cols=109 Identities=17% Similarity=0.318 Sum_probs=65.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---C--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG---Y--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg---~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 97 (182)
+|+|+|+|||||||+++.|++.++ + .+++. |.++....... ..... ...+.....+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~---~~~e~-------~~~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWK---EKYEE-------FIRDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhh---HHhHH-------HHHHHHHHHHHHHHhC--
Confidence 489999999999999999998873 3 34444 44443321100 00000 0112233344444433
Q ss_pred CCcEEEeCCCCCHHHHHHH---HHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 98 NDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l---~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+..+|+|+.......+..+ .+..+ .+..+||+++|.+.+++|..+|.
T Consensus 68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 68 KYSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred CCeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhCC
Confidence 4568888854433333333 33333 35678999999999999998873
No 98
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.21 E-value=4.8e-11 Score=91.03 Aligned_cols=116 Identities=22% Similarity=0.395 Sum_probs=77.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHcCChhhHHHHH-----
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKSGSENGTMIQN----- 72 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~~~~~~~~~~~----- 72 (182)
+++.+++.+.+|.||+||||||+.+.+. |....+.|+++- +......+.+-.+..
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~---Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~e 104 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLIL---GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFE 104 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHh---ccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhH
Confidence 5677999999999999999999999998 544444443311 111111111111111
Q ss_pred ----HHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 ----MIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPR----NEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~----~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+...++++.+.++...-+...+..+.+.+-||. .+..+..+++++..+|++++ +|+|+
T Consensus 105 NVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~-~DEPt 173 (263)
T COG1127 105 NVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF-LDEPT 173 (263)
T ss_pred hhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE-ecCCC
Confidence 133345577777777777777665555555666765 48999999999999998766 99996
No 99
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.21 E-value=1.9e-10 Score=83.31 Aligned_cols=112 Identities=20% Similarity=0.230 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (182)
+|.+|.|+|.+||||||+|+.|.++| | ...++. |.++..+........ ++-..+ -. ....+...+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~--~dR~e~-----~r-r~~~~A~ll~ 71 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSK--EDREEN-----IR-RIAEVAKLLA 71 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSH--HHHHHH-----HH-HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCH--HHHHHH-----HH-HHHHHHHHHH
Confidence 47899999999999999999999887 3 334555 444544332211111 000000 00 1111222222
Q ss_pred hcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 95 ~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
..+..+|+.........++..+........+.||++||.+++.+|-
T Consensus 72 -~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 72 -DQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp -HTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred -hCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 3456777777655566777777766544568999999999999994
No 100
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.2e-10 Score=93.93 Aligned_cols=124 Identities=21% Similarity=0.314 Sum_probs=80.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhHHHHHH-----------HHcC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGTMIQNM-----------IKEG 77 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~~~~~~-----------~~~~ 77 (182)
++++..+.+++|.||+||||||+++.+| |+..++.|++....... ....++.+|++ +..+
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~ 99 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG 99 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhh
Confidence 5567889999999999999999999999 99888888874433221 11222222221 1111
Q ss_pred ---CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 78 ---KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 78 ---~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
...+.+.+.+.+.+.+..-.-.. +++..| ..++|+.++.+++..+|.+++ +|+|...|-.+++.
T Consensus 100 Lk~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L-~DEPlSnLDa~lR~ 170 (338)
T COG3839 100 LKLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFL-LDEPLSNLDAKLRV 170 (338)
T ss_pred hhhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCEEE-ecCchhHhhHHHHH
Confidence 12234444444444443322122 244443 459999999999988998655 99999888777653
No 101
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.7e-11 Score=92.51 Aligned_cols=121 Identities=16% Similarity=0.304 Sum_probs=75.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC--------------------------Chhh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--------------------------SENG 67 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~--------------------------~~~~ 67 (182)
-++++.++..++|.|++|||||||++.|+ |+...+.|++..+..... ...+
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~---Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~ 102 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLA---GLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVG 102 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHh---cccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHH
Confidence 36678999999999999999999999999 887777777654442110 0112
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176 68 TMIQNMIKEGK-IVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 68 ~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~ 142 (182)
..+.+.+..+. ....+. +.+.+....-..-+++.+| ..+.|+.++++++..+|.++| +|+|+..|--.+.
T Consensus 103 ~~l~Epl~~~~~~~~~~~----i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLI-lDEptSaLD~siQ 177 (252)
T COG1124 103 RILSEPLRPHGLSKSQQR----IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI-LDEPTSALDVSVQ 177 (252)
T ss_pred HHHhhhhccCCccHHHHH----HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEE-ecCchhhhcHHHH
Confidence 22222222111 111122 2333333222223355544 469999999999999999888 9999966554443
No 102
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.20 E-value=5.8e-10 Score=85.49 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
+|+|.|..||||||+++.|++.++...+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4899999999999999999999986544
No 103
>PLN02924 thymidylate kinase
Probab=99.20 E-value=5.8e-10 Score=85.54 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=79.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH-----------HH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK 87 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 87 (182)
+++.+|+|.|+.||||||+++.|++.+....... .+.+ .-......|..+++++........... ..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~-ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~ 91 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWR-FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS 91 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeee-CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999985322211 0011 111123455555555544332222111 01
Q ss_pred HHHHHHHhcCCCcEEEeCCCCC-HHH-------HHHHHHH--hCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHH
Q 030176 88 LLQKAMEESGNDKFLIDGFPRN-EEN-------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGV 157 (182)
Q Consensus 88 ~l~~~l~~~~~~~~ildg~~~~-~~q-------~~~l~~~--~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~ 157 (182)
.+...+ ..+..+|.|.|..+ ..+ .+++... ....||++|+||+|++++.+|...+ .+.....+
T Consensus 92 ~I~pal--~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~-----~~~~E~~~ 164 (220)
T PLN02924 92 LMERKL--KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG-----GERYEKLE 164 (220)
T ss_pred HHHHHH--HCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-----ccccccHH
Confidence 112222 24678889987543 111 1122211 1236999999999999999996432 11222346
Q ss_pred HHHHHHHhhhhh
Q 030176 158 FCLFIMLSFSSC 169 (182)
Q Consensus 158 ~~~~~~~~~~~~ 169 (182)
|.+-++..+-..
T Consensus 165 ~~~rv~~~Y~~l 176 (220)
T PLN02924 165 FQKKVAKRFQTL 176 (220)
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
No 104
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.20 E-value=8.4e-11 Score=89.32 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=66.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCC----CCHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKLL 89 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l 89 (182)
.++++.+|+|+|++||||||+++.|+..++ ...+..++.+....... . ......... ++.+...+.+
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~l~~~l 75 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLE--M----AERKKTNFDHPDAFDNDLLYEHL 75 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCC--H----HHhcCCCCCCccHhHHHHHHHHH
Confidence 467889999999999999999999998875 34455554432111000 0 000000000 1112222222
Q ss_pred HHHHHh----------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 90 QKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 90 ~~~l~~----------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+... .....+|+||.+..... .+. ...|++||+++|.+.++.|+.+|.
T Consensus 76 ~~l~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~----~~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 76 KNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR----DLMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred HHHHCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH----HhCCEEEEEECChhHHHHHHHHHH
Confidence 222110 12356777876443211 121 135799999999999999999886
No 105
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.19 E-value=5.5e-10 Score=86.72 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS 64 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~ 64 (182)
.+|+|||.+||||||+++.|.+.+|++.+|.|.+.++...++.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~ 44 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNM 44 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCCh
Confidence 4799999999999999999988899999999999998877654
No 106
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.19 E-value=5.5e-10 Score=84.28 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=65.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCH-HHH-------HH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPS-EVT-------IK 87 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-------~~ 87 (182)
++++|+|.|+.||||||+++.|++.++ ...+.... ......+..+...+.. ...... ... .+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTRE------PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeC------CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999998873 22111100 0011123333333331 111111 111 11
Q ss_pred HHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 88 LLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 88 ~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+.+.+.. ..+..+|.|.++.. ......+...+ ...||++|+|++|++.+.+|+.+|.
T Consensus 76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 11111111 23567888864322 11112222222 1359999999999999999999985
No 107
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.6e-10 Score=83.20 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=70.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK 91 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l---g~-~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (182)
....++.+|.+||.+||||||+|.+|.++| |+ .++-.||-+++.........+ ++-.++. . ....+..
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~--edR~eni-----R-RvaevAk 89 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR--EDRIENI-----R-RVAEVAK 89 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCCh--HHHHHHH-----H-HHHHHHH
Confidence 345778899999999999999999999877 43 344456777777654322211 1111110 1 1122223
Q ss_pred HHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176 92 AMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 92 ~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~ 142 (182)
++.. ...+++-.+-+ -.+.+...+..++....+-||+++|.+++.+|=-
T Consensus 90 ll~d--aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDp 139 (197)
T COG0529 90 LLAD--AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDP 139 (197)
T ss_pred HHHH--CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCc
Confidence 3322 23344444433 3445555555566567789999999999999843
No 108
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.18 E-value=2.9e-10 Score=86.27 Aligned_cols=121 Identities=19% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcC-CCCCHH-HH-------HH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPSE-VT-------IK 87 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-------~~ 87 (182)
++++|+|.|+-||||||+++.|++.| |+.++-. ........+..+++.+.++ ...... .. .+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t------rEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT------REPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999877 3322211 1122344556666555543 122211 11 11
Q ss_pred HHHHHHHh--cCCCcEEEeCCCCC-HHH-----------HHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 88 LLQKAMEE--SGNDKFLIDGFPRN-EEN-----------RAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 88 ~l~~~l~~--~~~~~~ildg~~~~-~~q-----------~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
.+.+.+.. ..+..+|.|.|..+ ..+ ...+.+.. ...||+++|||.|+++..+|+.+|..
T Consensus 76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~ 150 (208)
T COG0125 76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE 150 (208)
T ss_pred HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 12222222 24678888987433 111 11221222 23799999999999999999999853
No 109
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.17 E-value=1.8e-10 Score=88.72 Aligned_cols=40 Identities=35% Similarity=0.586 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~ 59 (182)
...+|+|.|++||||||+++.|++++|+.+++.|++++..
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 3578999999999999999999999999999999987763
No 110
>PRK06696 uridine kinase; Validated
Probab=99.16 E-value=2.8e-10 Score=87.50 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh---CCcE--ecHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTH--LSAGDLLR 57 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~--~~~~di~~ 57 (182)
...+.+|+|+|++||||||+|+.|++.+ |..+ +..|+++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 3567899999999999999999999998 5444 44666653
No 111
>PRK07667 uridine kinase; Provisional
Probab=99.16 E-value=3.2e-10 Score=85.32 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE 59 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~ 59 (182)
+.+.+|+|+|++||||||+++.|++.++ ...++.++++...
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 4458999999999999999999998873 3477777765543
No 112
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.16 E-value=7.7e-10 Score=91.76 Aligned_cols=116 Identities=19% Similarity=0.238 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH-----HHcCCCCCHHH------------
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-----IKEGKIVPSEV------------ 84 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------ 84 (182)
.+|+|+|++||||||+++.|++ +|+.+++.|.+..+....+...-..+.+. +.....++...
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3699999999999999999976 89999999999888776543211111111 11111111111
Q ss_pred ----------HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 85 ----------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 85 ----------~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+...+.+.+....+..+++.+.|...+. .+....|.+|++++|.+.+.+|+.+|
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~------~~~~~~D~iI~V~ap~e~ri~Rl~~r 144 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES------GMAPLFHLVVVVDADVEVRVRRLVEQ 144 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC------CchhhCCEEEEEECCHHHHHHHHHhc
Confidence 1111222222223344555554332111 11113589999999999999999885
No 113
>PTZ00301 uridine kinase; Provisional
Probab=99.15 E-value=1.4e-10 Score=88.32 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh----C---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH----HHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF----G---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVTIKL 88 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l----g---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 88 (182)
+-.+|+|+|+|||||||+|+.|++.+ + ...+..|++++..... .... .. ......|+ +...+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~--~~~~--~~--~~~~d~p~a~D~~~l~~~ 75 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNI--PESE--RA--YTNYDHPKSLEHDLLTTH 75 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccC--CHHH--hc--CCCCCChhhhCHHHHHHH
Confidence 34789999999999999999998776 2 2244555554432110 0000 00 00112222 222222
Q ss_pred HHHHHHh----------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 89 LQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 89 l~~~l~~----------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
+..+... .....+|+||+..... ..+... .|+.||+++|.++++.|..+|..
T Consensus 76 l~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l----~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 76 LRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNE----MDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred HHHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHh----CCEEEEEeCChhHHHHHHHhhhH
Confidence 2222110 1235677788533111 123222 47899999999999999999984
No 114
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.15 E-value=1.1e-09 Score=82.57 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=65.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHH---
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--- 89 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--- 89 (182)
.++|.+|+|+|++||||||+++.|++.+ +..+++.+++....... .+.. . -........+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~---~~~~--------~-~~~~~~~~~l~~~ 88 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD---LGFS--------D-ADRKENIRRVGEV 88 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc---CCcC--------c-ccHHHHHHHHHHH
Confidence 4678999999999999999999999876 24556655544222110 0000 0 0001111112
Q ss_pred HHHHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHH
Q 030176 90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140 (182)
Q Consensus 90 ~~~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R 140 (182)
...+. ..+..+ +..+.. ...++..+...+.....++|||++|.+.+.+|
T Consensus 89 a~~~~-~~G~~V-I~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 89 AKLMV-DAGLVV-LTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHh-hCCCEE-EEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 11121 224444 444443 46777777777654444589999999999999
No 115
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.14 E-value=2.2e-09 Score=79.99 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH---HHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---TIKL 88 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 88 (182)
...++.+++|+|++||||||+++.|++.+ | ...++.+++ +...... ..+..+. ....
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~-r~~l~~~--------------~~~~~~~~~~~~~~ 78 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV-RHGLNKD--------------LGFSEEDRKENIRR 78 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH-Hhhhccc--------------cCCCHHHHHHHHHH
Confidence 34678999999999999999999999887 2 344555443 3322211 1111111 1111
Q ss_pred HHHH--HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 89 LQKA--MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 89 l~~~--l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
+... .....+..+|+|.......++..+.......+.++||+++|.+.+.+|-
T Consensus 79 ~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 79 IGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRD 133 (184)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhC
Confidence 1111 1123467788887555566666666555444567899999999999993
No 116
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.14 E-value=9.4e-10 Score=82.20 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=62.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCChhhHHHHHHHHcCCCCCHHHH--------HH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENGTMIQNMIKEGKIVPSEVT--------IK 87 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 87 (182)
+.+++|+||+|||||||++.|+..++..++..+..+..... .-...+..+....+.+. +...+. ..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNL-FALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCc-hhhHHHHhCCccCCcH
Confidence 46899999999999999999998776544443322111100 00001111111111221 100000 01
Q ss_pred HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
.+.+.+.. +..+|++|- ......+.+.+. .+-.+||+++|.+++.+|+.+|
T Consensus 81 ~~~~~l~~--g~~VI~~G~---~~~~~~~~~~~~-~~~~vi~l~~s~e~l~~RL~~R 131 (186)
T PRK10078 81 EIDLWLHA--GFDVLVNGS---RAHLPQARARYQ-SALLPVCLQVSPEILRQRLENR 131 (186)
T ss_pred HHHHHHhC--CCEEEEeCh---HHHHHHHHHHcC-CCEEEEEEeCCHHHHHHHHHHh
Confidence 13333332 455667654 222334444443 3446889999999999999987
No 117
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.13 E-value=7.6e-11 Score=85.64 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=70.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC------------------ChhhHHHHH---
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------------------SENGTMIQN--- 72 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~------------------~~~~~~~~~--- 72 (182)
.++...++..|+|+||+||||||+.+.++ .+...+.|.++++..... .-.|.++.+
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va---~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNli 98 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVA---SLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLI 98 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHH---hccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccc
Confidence 35567889999999999999999999998 444455544433322211 112222222
Q ss_pred --HHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 73 --MIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 73 --~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
+..+++........+++...... ..+++ ......+|+..+.+.+...|++++ ||+++..+
T Consensus 99 fP~~~r~rr~dr~aa~~llar~~l~----~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILL-LDE~TsAL 164 (223)
T COG4619 99 FPWQIRNRRPDRAAALDLLARFALP----DSILTKNITELSGGEKQRIALIRNLQFMPKILL-LDEITSAL 164 (223)
T ss_pred cchHHhccCCChHHHHHHHHHcCCc----hhhhcchhhhccchHHHHHHHHHHhhcCCceEE-ecCchhhc
Confidence 12222223334444444443222 22333 345679999999999988898777 99987443
No 118
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.13 E-value=1.1e-09 Score=79.84 Aligned_cols=104 Identities=23% Similarity=0.387 Sum_probs=65.7
Q ss_pred CCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCcEEEeC--C
Q 030176 30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDKFLIDG--F 106 (182)
Q Consensus 30 ~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~ildg--~ 106 (182)
+||||||+++.||+.++++++|.|+.+.+..+ +++.+++. .|.....+...+.+.+.+... ..+|.-| .
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~~--~~VIa~GGG~ 72 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKEN--NCVIACGGGI 72 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEEEE-TTG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhccC--cEEEeCCCCC
Confidence 79999999999999999999999999877654 22222222 122222334445555554332 3333222 4
Q ss_pred CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 107 PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 107 ~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
+...+.+..+.. ...+|||+.|.+.+.+|+..+..
T Consensus 73 ~~~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 73 VLKEENRELLKE-----NGLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp GGSHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCC
Confidence 455555555542 23799999999999999987754
No 119
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.13 E-value=1.4e-10 Score=91.33 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=77.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------H---cCChhhHHHHHH----------
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------K---SGSENGTMIQNM---------- 73 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------~---~~~~~~~~~~~~---------- 73 (182)
+-+++++.+.++++.||+||||||+.+++| |+...+.|.|..... . .....|..+|++
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA---GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~ 96 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIA---GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVAD 96 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHh---CcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHh
Confidence 456678999999999999999999999999 776666655422111 1 111222222222
Q ss_pred -HHcCC----C-CCHHHHHHHHHHHHHhcCCCcEEEeCCCC----CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 74 -IKEGK----I-VPSEVTIKLLQKAMEESGNDKFLIDGFPR----NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 74 -~~~~~----~-~~~~~~~~~l~~~l~~~~~~~~ildg~~~----~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
+..|. . .+...+...+.+++.--...+ +-+.||. .+.|+..+++++..+|.+++ ||+|...+-..+++
T Consensus 97 NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVALARALA~eP~vLL-LDEPf~ALDa~vr~ 174 (345)
T COG1118 97 NIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRK 174 (345)
T ss_pred hhhhcccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHHHHHHhhcCCCeEe-ecCCchhhhHHHHH
Confidence 11121 1 122333344444443321111 2445554 49999999999999998777 99999776655543
No 120
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.13 E-value=2.5e-09 Score=77.23 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=63.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHH--HHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--QKAMEE 95 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l---g~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ 95 (182)
+++|+|+|||||||+++.|++.+ +. ..++. |.+++.......... ....+....+. ...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~----------~~~~~~~~~~~~~a~~l~- 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSR----------EDREENIRRIAEVAKLLA- 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCc----------chHHHHHHHHHHHHHHHH-
Confidence 47899999999999999999988 54 33444 434433221100000 00011111111 11122
Q ss_pred cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 96 ~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
..+..+|+|.......++..+.......+..+||+++|.+++++|-.+
T Consensus 69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 235677788754556666666555433355689999999999998654
No 121
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.12 E-value=2e-09 Score=91.42 Aligned_cols=112 Identities=20% Similarity=0.293 Sum_probs=70.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
.|+|+|++||||||+++.|++.+|+.+++.|+++.+..+ ......+. ..+.....+...+.+++.... ...++
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g--~~i~~i~~---~~Ge~~fr~~E~~~l~~l~~~--~~~Vi 74 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG--RSVRRIFE---EDGEEYFRLKEKELLRELVER--DNVVV 74 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC--CCHHHHHH---HhhhHHHHHHHHHHHHHHhhc--CCEEE
Confidence 589999999999999999999999999999998766422 11112111 123323334444445544322 22332
Q ss_pred EeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCC
Q 030176 103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQ 149 (182)
Q Consensus 103 ldg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~ 149 (182)
-.| .......+..+.. ..+|||++|.+++.+|+..+ +|+
T Consensus 75 s~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RP 115 (488)
T PRK13951 75 ATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRP 115 (488)
T ss_pred ECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCC
Confidence 233 2223334434421 35899999999999999865 454
No 122
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=2.2e-10 Score=88.79 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=72.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH-----------H-------cCChhhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-----------K-------SGSENGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~-----------~-------~~~~~~~~~~~~~ 74 (182)
+-++...++.+++|.||+|||||||.|.+. |+.....|.+..... . .......+..+.+
T Consensus 22 ~i~l~v~~G~~~~iiGPNGaGKSTLlK~iL---Gll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 22 DISLSVEKGEITALIGPNGAGKSTLLKAIL---GLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred ccEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 446677889999999999999999999998 755555555431111 0 1112334444444
Q ss_pred HcCCCCC-------HHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KEGKIVP-------SEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~~~~~~-------~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.-+.... .....+.+.+.+...+...+ -+......+.|+..+++++..+|++++ ||+|+
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll-LDEP~ 167 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL-LDEPF 167 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE-ecCCc
Confidence 4432111 11112344444443211111 133456779999999999999999888 99997
No 123
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.09 E-value=3.8e-11 Score=93.36 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=69.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHH------------cCChhhHHHHHHHHc
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIK------------SGSENGTMIQNMIKE 76 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di~~~~~~------------~~~~~~~~~~~~~~~ 76 (182)
+-++..+++.+++|.||+|||||||.++|+.-+. -..++..++...... .....+....+....
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~ 99 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLL 99 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhh
Confidence 4466788999999999999999999999995442 233444333221111 011122222333333
Q ss_pred CCC-----CC--HHHHHHHHHHHHHhcC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 77 GKI-----VP--SEVTIKLLQKAMEESG---NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 77 ~~~-----~~--~~~~~~~l~~~l~~~~---~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
|+. +. .+...+.+.+.+...+ ...-.++.....+.|+.++++++.++|++++ ||+|+.
T Consensus 100 GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL-LDEPTs 167 (258)
T COG1120 100 GRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL-LDEPTS 167 (258)
T ss_pred cCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE-eCCCcc
Confidence 321 11 1111122333332211 0011245566789999999999999998777 999993
No 124
>PLN02348 phosphoribulokinase
Probab=99.07 E-value=5.1e-10 Score=91.68 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=72.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC--------------------cEecHHHHHHHHHHcCChhhHHHHHHHHcC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIKSGSENGTMIQNMIKEG 77 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~--------------------~~~~~~di~~~~~~~~~~~~~~~~~~~~~~ 77 (182)
..++.+|+|+|++||||||+++.|++.|+- ..+..|+.+..........+.. + ...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t---~-ldP 121 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT---A-LDP 121 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc---c-CCc
Confidence 356789999999999999999999999862 3566677643211100000000 0 000
Q ss_pred CCCCHHHHHHHHHHHHHh---------------------cCCCcEEEeCC-CCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 78 KIVPSEVTIKLLQKAMEE---------------------SGNDKFLIDGF-PRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 78 ~~~~~~~~~~~l~~~l~~---------------------~~~~~~ildg~-~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
....-+...+.+..+... .....+|++|. +...+ .+....|+.||+++|.+
T Consensus 122 ~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e-------~lr~l~D~~IyVd~~~d 194 (395)
T PLN02348 122 RANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE-------RVRDLLDFSIYLDISDD 194 (395)
T ss_pred ccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc-------cccccCcEEEEEECCHH
Confidence 011112222222222211 12457777884 21111 11123689999999999
Q ss_pred HHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176 136 EMERRILNRNQVRQKLPFSWGVFCLFI 162 (182)
Q Consensus 136 ~l~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (182)
..+.|..+|...+ ...+.++....+
T Consensus 195 vrl~RRI~RD~~e--RG~S~EeV~~~i 219 (395)
T PLN02348 195 VKFAWKIQRDMAE--RGHSLESIKASI 219 (395)
T ss_pred HHHHHHHHhhHhh--cCCCHHHHHHHH
Confidence 9998888887432 123455555544
No 125
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=4e-10 Score=84.74 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=72.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC---------cEecHHHH---------HHHHHHcC----ChhhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY---------THLSAGDL---------LRAEIKSG----SENGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~---------~~~~~~di---------~~~~~~~~----~~~~~~~~ 71 (182)
-++++++..+.+|.||+||||||+.+.|-+-... ..++..++ ++...++. ....+++.
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIy 105 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIY 105 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHH
Confidence 3567899999999999999999999988543211 11222222 33333321 22334444
Q ss_pred HHHHcCC---CCCHHHHHHHHHHHHHhcC--------CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH------
Q 030176 72 NMIKEGK---IVPSEVTIKLLQKAMEESG--------NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE------ 134 (182)
Q Consensus 72 ~~~~~~~---~~~~~~~~~~l~~~l~~~~--------~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~------ 134 (182)
+-+..|. ...+....+.++..+.... .+.. --+....++|+.+++++++.+|++++ +|+|+
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s-a~~LSGGQQQRLcIARalAv~PeVlL-mDEPtSALDPI 183 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKS-ALGLSGGQQQRLCIARALAVKPEVLL-MDEPTSALDPI 183 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC-ccCCChhHHHHHHHHHHHhcCCcEEE-ecCcccccCch
Confidence 4322221 1111333333333333210 0000 11355679999999999999998666 99997
Q ss_pred -----HHHHHHHHh
Q 030176 135 -----EEMERRILN 143 (182)
Q Consensus 135 -----~~l~~R~~~ 143 (182)
|+++..+++
T Consensus 184 sT~kIEeLi~eLk~ 197 (253)
T COG1117 184 STLKIEELITELKK 197 (253)
T ss_pred hHHHHHHHHHHHHh
Confidence 566666654
No 126
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.06 E-value=3.4e-10 Score=85.13 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=61.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---Cc------EecHHHHHHHHHHcCChhhHHHHHHH--HcCCC----CCHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG---YT------HLSAGDLLRAEIKSGSENGTMIQNMI--KEGKI----VPSEVTIK 87 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg---~~------~~~~~di~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~ 87 (182)
+|+|+|++||||||+|+.|+..|+ .. .+..++.+....... ..... ..... +..+...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~p~a~d~~~l~~ 74 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRD------RKGRGENRYNFDHPDAFDFDLLKE 74 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHH------HHHHCTTTSSTTSGGGBSHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhh------HhhccccccCCCCccccCHHHHHH
Confidence 689999999999999999999996 22 333433322211100 00000 00111 22233344
Q ss_pred HHHHHHHh----------------------cCCCcEEEeCCCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 88 LLQKAMEE----------------------SGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 88 ~l~~~l~~----------------------~~~~~~ildg~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
.+..+... .....+|++|.... .+. ++. ..|+.||++++.+..+.|...|
T Consensus 75 ~l~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~~----l~D~~ifld~~~~~~l~Rri~R 147 (194)
T PF00485_consen 75 DLKALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LRD----LFDLKIFLDADEDLRLERRIQR 147 (194)
T ss_dssp HHHHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HGG----G-SEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ecc----cceeEEEecccHHHHHHHHhhh
Confidence 44433221 13467888884322 222 222 2589999999999999999998
Q ss_pred hc
Q 030176 145 NQ 146 (182)
Q Consensus 145 ~~ 146 (182)
..
T Consensus 148 D~ 149 (194)
T PF00485_consen 148 DV 149 (194)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 127
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.04 E-value=8.4e-09 Score=76.19 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=62.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH---HHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQ 90 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ 90 (182)
+++.+|+|+|+|||||||+++.|++.+. ..+++.|.+ +........... -..+.. ...+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~-----------~~r~~~~~~~~~~a 69 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSK-----------EDRDTNIRRIGFVA 69 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCCh-----------hhHHHHHHHHHHHH
Confidence 4678999999999999999999998872 445666544 333221100000 000001 11122
Q ss_pred HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
..+. ..+..++++........+..+.... . ...+||+++|.+.+.+|.
T Consensus 70 ~~~~-~~g~~vi~~~~~~~~~~~~~l~~~~-~-~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 70 NLLT-RHGVIVLVSAISPYRETREEVRANI-G-NFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHHH-hCCCEEEEecCCCCHHHHHHHHhhc-C-CeEEEEEcCCHHHHHHhC
Confidence 2222 2345566776433344454554433 2 346888999999999995
No 128
>PRK15453 phosphoribulokinase; Provisional
Probab=99.04 E-value=2.2e-09 Score=84.50 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~ 57 (182)
.++.+|+|+|.|||||||+++.|++.|+ ...++.|++++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4568999999999999999999998774 34566666654
No 129
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.03 E-value=4.8e-09 Score=81.65 Aligned_cols=126 Identities=17% Similarity=0.269 Sum_probs=73.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe---cHHHHHHHHHHcCC----------hhhHHHHHHHHcC-CCCCH--
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL---SAGDLLRAEIKSGS----------ENGTMIQNMIKEG-KIVPS-- 82 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~---~~~di~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~-- 82 (182)
.+.++|.+.|+.|+|||++|+.||+++|+.++ +.|+++.+...... ...-.+..+.... .....
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 56789999999999999999999999997654 56666544333100 0000011111111 01111
Q ss_pred ---------HHHHHHHHHHHHhcCCCcEEEeCCCCC-HHHH-----------------HHHHHHh---CCCCcEEEEEec
Q 030176 83 ---------EVTIKLLQKAMEESGNDKFLIDGFPRN-EENR-----------------AAFEAVT---KIEPEFVLFFDC 132 (182)
Q Consensus 83 ---------~~~~~~l~~~l~~~~~~~~ildg~~~~-~~q~-----------------~~l~~~~---~~~~~~vI~ld~ 132 (182)
..-.++|+..+. .+.++|++..|.+ .-.. .++++.. -..|++|||||.
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 112233344442 3678889975543 1111 1111111 135899999999
Q ss_pred CHHHHHHHHHhhhc
Q 030176 133 SEEEMERRILNRNQ 146 (182)
Q Consensus 133 ~~~~l~~R~~~R~~ 146 (182)
|...+.+|+++|+.
T Consensus 227 Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 227 PVNKVLENIKRRGN 240 (393)
T ss_pred CcHHHHHHHHhcCC
Confidence 99999999999953
No 130
>PRK07429 phosphoribulokinase; Provisional
Probab=99.02 E-value=2.7e-09 Score=86.29 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL 56 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~ 56 (182)
.++.+|+|+|++||||||+++.|++.++ ...+..|++.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 4668999999999999999999998887 4456666653
No 131
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.01 E-value=2.3e-09 Score=80.74 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=27.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL 56 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~ 56 (182)
+|+|+|++||||||+++.|+..++ ..++..|+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 589999999999999999998873 4566666654
No 132
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.00 E-value=1.3e-09 Score=81.02 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=64.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-- 95 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 95 (182)
+|+|+|++||||||+|+.|++.+ +...++.|+++..........+. ......+..+...+.+..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~-----~d~~~~~d~~~l~~~l~~l~~~~~ 75 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGN-----YDFESILDLDLLNKNLHDLLNGKE 75 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCC-----CCCCccccHHHHHHHHHHHHCCCe
Confidence 58999999999999999999987 34678888887643100000000 0000001222233333322110
Q ss_pred ---------------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH-HHHHHHhhh
Q 030176 96 ---------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNRN 145 (182)
Q Consensus 96 ---------------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~-l~~R~~~R~ 145 (182)
.....+|+||...... .+... .|+.||+++|.+. ++.|...|.
T Consensus 76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~~----~d~~I~vd~~~~~~rl~rri~RD 140 (179)
T cd02028 76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRSL----LDIRVAVSGGVHLNRLLRRVVRD 140 (179)
T ss_pred eecccceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHhh----cCEEEEEeCCccHHHHHHHHHHh
Confidence 1245788888533322 23222 5899999999997 666666666
No 133
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.00 E-value=5.9e-09 Score=78.11 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHH-HHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGD-LLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~d-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 97 (182)
++|+++|+|||||||+++.|++.+. ...++.+. ...-..... ..+..-+.+.. ...+-...++..++ +
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DE-slpi~ke~yre----s~~ks~~rlldSal---k 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDE-SLPILKEVYRE----SFLKSVERLLDSAL---K 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheeccc-ccchHHHHHHH----HHHHHHHHHHHHHh---c
Confidence 5799999999999999999998874 22222211 111111000 00000000000 00011112222222 2
Q ss_pred CCcEEEeC--CCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 98 NDKFLIDG--FPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 98 ~~~~ildg--~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+.-+|+|. |..+ ..|..+.+..+.+ +..+|++.+|.+++++|-.+|
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~t-t~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERKT-TWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcCC-ceEEEEEccCHHHHHHhhccC
Confidence 45666775 3333 4444444444543 568999999999999998776
No 134
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.00 E-value=5.4e-10 Score=85.38 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=31.2
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d 54 (182)
+-++.+.++.+++|+||+|||||||.+.++ ++...+.+.
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig---~ld~pt~G~ 61 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLG---GLDKPTSGE 61 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHh---cccCCCCce
Confidence 345678999999999999999999999998 554444444
No 135
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.99 E-value=1.3e-08 Score=89.57 Aligned_cols=41 Identities=37% Similarity=0.591 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
+.++|+|.||+||||||+++.|+++||+.+++.+.+++...
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~ 481 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTA 481 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHH
Confidence 35689999999999999999999999999999999988763
No 136
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.99 E-value=3.5e-10 Score=87.92 Aligned_cols=107 Identities=15% Similarity=0.268 Sum_probs=70.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (182)
+-++++.++.+++|+|.+||||||+++.|. ++.-...|.++++..+.. ....+...+.+.++
T Consensus 31 ~Vsf~i~~ge~~glVGESG~GKSTlgr~i~---~L~~pt~G~i~f~g~~i~---------------~~~~~~~~~~v~el 92 (268)
T COG4608 31 GVSFSIKEGETLGLVGESGCGKSTLGRLIL---GLEEPTSGEILFEGKDIT---------------KLSKEERRERVLEL 92 (268)
T ss_pred ceeEEEcCCCEEEEEecCCCCHHHHHHHHH---cCcCCCCceEEEcCcchh---------------hcchhHHHHHHHHH
Confidence 346788999999999999999999999999 665566666655443210 01122233334444
Q ss_pred HHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHH
Q 030176 93 MEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138 (182)
Q Consensus 93 l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~ 138 (182)
+...+-..-.++. +...+.|+..+++++..+|+++| +|+|...+-
T Consensus 93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV-~DEpvSaLD 141 (268)
T COG4608 93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIV-ADEPVSALD 141 (268)
T ss_pred HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEE-ecCchhhcc
Confidence 4332211212333 34569999999999999998877 999985544
No 137
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.98 E-value=1e-09 Score=81.91 Aligned_cols=117 Identities=22% Similarity=0.374 Sum_probs=64.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCcEe--cHHHHHHHHHHcCCh----hhHHHHHHHHcCCCCC--------HHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHL--SAGDLLRAEIKSGSE----NGTMIQNMIKEGKIVP--------SEV 84 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~--~~~di~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~ 84 (182)
+++|+|+||+||||+|+++.|.+.+ ++..+ .+..-.+.....+.+ ....+...+..+..+. .-.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 5689999999999999999999885 23222 111111111001111 1133333333332211 111
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe-cCHHHHHHHHHhh
Q 030176 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR 144 (182)
Q Consensus 85 ~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld-~~~~~l~~R~~~R 144 (182)
..+.+.+.+.. +..+|+|..+....+.... ...| ++||+. .+.+.+.+|+.+|
T Consensus 82 ~~~~i~~~~~~--~~~~ild~~~~~~~~l~~~----~~~~-~vIfi~~~s~~~l~~rl~~R 135 (184)
T smart00072 82 SKETIRQVAEQ--GKHCLLDIDPQGVKQLRKA----QLYP-IVIFIAPPSSEELERRLRGR 135 (184)
T ss_pred CHHHHHHHHHc--CCeEEEEECHHHHHHHHHh----CCCc-EEEEEeCcCHHHHHHHHHhc
Confidence 22334444433 5678899876665554322 2344 788898 5556799999977
No 138
>PRK13976 thymidylate kinase; Provisional
Probab=98.98 E-value=8.5e-09 Score=78.52 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH-HH-------HHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT-------IKL 88 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~-----~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~ 88 (182)
++|+|.|.-||||||+++.|++.|.- ..+.. ....+...+..+++++......... .. .+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~------~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT------REPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe------eCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999988742 11111 0001222334444433321111111 10 111
Q ss_pred HHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh-CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 89 LQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT-KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 89 l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~-~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+.+.+.. ..+..+|.|.|..+ ......+.... ...||++|+||+|+++..+|+.+|
T Consensus 75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence 1111221 24678888876433 11222333222 236999999999999999999644
No 139
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.98 E-value=1.5e-08 Score=89.94 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
.+|+|.|||||||||+++.||+++|+.+++.|.+++...
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~ 40 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA 40 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence 379999999999999999999999999999999887754
No 140
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.97 E-value=4.3e-09 Score=83.02 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH----HHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV----TIKLLQKA 92 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~ 92 (182)
++|+|+|.|||||||+|+.|.+.+ + ..+++.+++. ..... ... ...+.. ....++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~----------~~~Ek~~R~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YAD----------SKKEKEARGSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S------------GGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhc----------hhhhHHHHHHHHHHHHHh
Confidence 589999999999999999999875 2 2345544443 11100 000 011122 22333333
Q ss_pred HHhcCCCcEEEeCCC--CC-HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 93 MEESGNDKFLIDGFP--RN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 93 l~~~~~~~~ildg~~--~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+. ....+|+|+.. .+ +-+.-++++..+. ...+||+++|.+.+++|-.+|.
T Consensus 68 ls--~~~iVI~Dd~nYiKg~RYelyclAr~~~~-~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 68 LS--KDTIVILDDNNYIKGMRYELYCLARAYGT-TFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp HT--T-SEEEE-S---SHHHHHHHHHHHHHTT--EEEEEEEE--HHHHHHHHHHTT
T ss_pred hc--cCeEEEEeCCchHHHHHHHHHHHHHHcCC-CEEEEEECCCHHHHHHhhhccC
Confidence 32 34788899843 33 3334455665654 5589999999999999999884
No 141
>PRK07933 thymidylate kinase; Validated
Probab=98.97 E-value=2.5e-08 Score=76.15 Aligned_cols=118 Identities=14% Similarity=0.209 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC---CcEec----------HHHHHHHHHHcCC-h---hhHHHHHHHHcCCCCCHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLS----------AGDLLRAEIKSGS-E---NGTMIQNMIKEGKIVPSEV 84 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg---~~~~~----------~~di~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~ 84 (182)
++|+|.|+-||||||+++.|++.|. +.++. .++.+++...... . ......-+....+. +.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~---~~ 77 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA---GA 77 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh---hh
Confidence 4799999999999999999999883 22221 1233444333110 0 00000000000000 00
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCCCCH--------------HHHHHHHHH----hC-CCCcEEEEEecCHHHHHHHHHhhh
Q 030176 85 TIKLLQKAMEESGNDKFLIDGFPRNE--------------ENRAAFEAV----TK-IEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 85 ~~~~l~~~l~~~~~~~~ildg~~~~~--------------~q~~~l~~~----~~-~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
...+...+ ..+..+|.|.|..+. ....++... ++ ..||++||||.|++...+|+.+|+
T Consensus 78 -~~~I~p~l--~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~ 154 (213)
T PRK07933 78 -RDELAGLL--AAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRA 154 (213)
T ss_pred -HHHHHHHH--hCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhc
Confidence 11122222 235678888864331 111122111 12 269999999999999999999884
No 142
>PRK05439 pantothenate kinase; Provisional
Probab=98.97 E-value=4.3e-09 Score=84.34 Aligned_cols=118 Identities=17% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHHcCChhhHHHHHHHH-cC--CCCCHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIK-EG--KIVPSEVTIK 87 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg-------~~~~~~~di~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 87 (182)
...+.+|+|+|+|||||||+|+.|++.++ ...+..|+.+....... ..+ .+. .| ..++.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~-~~~-----l~~~kg~Pes~D~~~l~~ 156 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLE-ERG-----LMKRKGFPESYDMRALLR 156 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHh-hhh-----ccccCCCcccccHHHHHH
Confidence 35678999999999999999999998664 23566666654332110 000 000 01 1122222333
Q ss_pred HHHHHHHh------------------------cCCCcEEEeCCCCC-HH---HHHHHHHHhCCCCcEEEEEecCHHHHHH
Q 030176 88 LLQKAMEE------------------------SGNDKFLIDGFPRN-EE---NRAAFEAVTKIEPEFVLFFDCSEEEMER 139 (182)
Q Consensus 88 ~l~~~l~~------------------------~~~~~~ildg~~~~-~~---q~~~l~~~~~~~~~~vI~ld~~~~~l~~ 139 (182)
.+..+... .....+|++|.... .. ....+.. ..|+.||+|+|.+.+.+
T Consensus 157 ~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d----~~D~~IfVda~~~~~~~ 232 (311)
T PRK05439 157 FLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSD----FFDFSIYVDADEDLIEK 232 (311)
T ss_pred HHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHH----hCCEEEEEECCHHHHHH
Confidence 33322210 12356777884221 11 1122222 24899999999999988
Q ss_pred HHHhhh
Q 030176 140 RILNRN 145 (182)
Q Consensus 140 R~~~R~ 145 (182)
|+.+|.
T Consensus 233 w~i~R~ 238 (311)
T PRK05439 233 WYIERF 238 (311)
T ss_pred HHHHHH
Confidence 887775
No 143
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.97 E-value=3e-09 Score=81.59 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLL 56 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg-------~~~~~~~di~ 56 (182)
+|+|+|++||||||+++.|+..+. ...+..|+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 589999999999999999998873 2345555553
No 144
>PHA03132 thymidine kinase; Provisional
Probab=98.96 E-value=1.6e-08 Score=86.75 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
+..+|+|.|..||||||+++.|++.+|..+
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~V 285 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNV 285 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 478999999999999999999999885443
No 145
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.95 E-value=2.1e-09 Score=85.89 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=68.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-------------HHcC-----ChhhHHHHHH--
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-------------IKSG-----SENGTMIQNM-- 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-------------~~~~-----~~~~~~~~~~-- 73 (182)
-++++.++.+++|.||+||||||+.+.|+ |....+.|.+.... ...- .....+..+.
T Consensus 24 vs~~i~~Gei~gllG~NGAGKTTllk~l~---gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~ 100 (293)
T COG1131 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILA---GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLE 100 (293)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHH
Confidence 35678899999999999999999999999 65554444432111 1100 0011111111
Q ss_pred -HHcCCCCC----HHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 -IKEGKIVP----SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 -~~~~~~~~----~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...-...+ .+.+.+++....... ....-+..+...++|+..++.++..+|+++| ||+|+
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli-LDEPt 164 (293)
T COG1131 101 FFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLI-LDEPT 164 (293)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence 11111111 122333333322221 1123366788889999999999999998777 99998
No 146
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.95 E-value=9.7e-09 Score=88.73 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCC------cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH---HHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EVTIK 87 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~------~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 87 (182)
...++.+|+|+|++||||||+++.|++.++. .+++.| .++..+.... .+.+ +....
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~--------------~f~~~er~~~~~ 452 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSEL--------------GFSKEDRDLNIL 452 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCC--------------CCCHHHHHHHHH
Confidence 4577889999999999999999999999985 666664 4454432211 1111 11111
Q ss_pred HH---HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHH
Q 030176 88 LL---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 88 ~l---~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~ 142 (182)
.+ ...+. ..+.++|++........+....+.+.. ...++|||++|.+++.+|..
T Consensus 453 ~l~~~a~~v~-~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 453 RIGFVASEIT-KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHHHHHHHH-hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence 11 11111 235677778643334444444444422 22368999999999999974
No 147
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.94 E-value=1.5e-08 Score=74.99 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+++|+|++||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998775
No 148
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.94 E-value=4.3e-09 Score=83.69 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...|.+|+|+|++||||||+++.|...+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999887665
No 149
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.94 E-value=1.4e-08 Score=80.82 Aligned_cols=96 Identities=25% Similarity=0.315 Sum_probs=56.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S 96 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~ 96 (182)
....+|+|+|++||||||+++.|. .+|+.+++. .+..+..+++...... .
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~~ 55 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGGI 55 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCCC
Confidence 344689999999999999999885 668777643 2222232333222221 1
Q ss_pred CCCcEEEeCCCCCH-----HHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 97 GNDKFLIDGFPRNE-----ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 97 ~~~~~ildg~~~~~-----~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
..-.+++|--.... .....+.. .+. ...+|||+++.+++.+|+.++
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~-~g~-~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRE-RGI-DVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHH-cCC-cEEEEEEECCHHHHHHHHhhc
Confidence 22355566532211 11112222 122 225789999999999999853
No 150
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.93 E-value=3.9e-09 Score=78.69 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=69.1
Q ss_pred EEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH------------HHHHHH
Q 030176 26 VLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV------------TIKLLQ 90 (182)
Q Consensus 26 I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~ 90 (182)
|.|+.||||||+++.|++++. +..+.. ........+..+.+++.......... ....+.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~------~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~ 74 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIIT------FPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIR 74 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEE------ESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCccccc------CCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998873 321100 00011223344444444222222111 111122
Q ss_pred HHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHh-CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHH
Q 030176 91 KAMEESGNDKFLIDGFPRN------------EENRAAFEAVT-KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGV 157 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~-~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~ 157 (182)
..+ ..+..+|.|.|..+ ......+...+ ...||++|+||+|+++..+|+..|.. ..........
T Consensus 75 ~~l--~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~-~~~~~~~~~~ 151 (186)
T PF02223_consen 75 PAL--KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE-KDDEEEEDLE 151 (186)
T ss_dssp HHH--HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS-TTTTTTHHHH
T ss_pred HHH--cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc-cchHHHHHHH
Confidence 222 23678888964211 22222232222 23799999999999999999999964 2223333334
Q ss_pred HHHHHHHhh
Q 030176 158 FCLFIMLSF 166 (182)
Q Consensus 158 ~~~~~~~~~ 166 (182)
|..-.+..+
T Consensus 152 ~~~~~~~~y 160 (186)
T PF02223_consen 152 YLRRVREAY 160 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 151
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.92 E-value=8e-08 Score=71.61 Aligned_cols=116 Identities=19% Similarity=0.281 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCC-----CC---------------
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP--------------- 81 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------- 81 (182)
.+++++|..||||||+++.+ +.+|++.+|.|.+.++...++.+....+.+....... +.
T Consensus 2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 47899999999999999866 6999999999999999999877655555443222111 11
Q ss_pred --------HHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 82 --------SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 82 --------~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+..++.++.+.. .+...+|+|- |-. |+..+..-...+|.+.||.+.-.+|+.+|+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi-PLL------FE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd 147 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI-PLL------FEAKLLKICHKTVVVTCDEELQLERLVERD 147 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec-hHH------HHHhHHhheeeEEEEEECcHHHHHHHHHhc
Confidence 11122222332222 2445555663 221 111111113456668999999999999995
No 152
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.92 E-value=3.6e-08 Score=72.83 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=64.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC--H---HHHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--S---EVTIKLLQKAM 93 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~~l 93 (182)
+.+|+|.|++-|||||+++.|.+.+. +.++..|.+...........+.. +......+ . ......+...+
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~i 76 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDG----LEPAGDRPDGGPLFRRLYAAMHAAI 76 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTS----EEEETTSEEE-HHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcc----ccccccCCchhHHHHHHHHHHHHHH
Confidence 46899999999999999999999986 45677776665422110000000 00000000 1 11122222222
Q ss_pred Hh--cCCCcEEEeCCCCCHH-HHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 94 EE--SGNDKFLIDGFPRNEE-NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 94 ~~--~~~~~~ildg~~~~~~-q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.. ..+..+|+|....... -.+.+.+.+...+-+.|-+.||.+++.+|-..|.
T Consensus 77 aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 77 AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence 11 3466777887544444 3555656665456578889999999999999885
No 153
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.92 E-value=4.3e-09 Score=81.20 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..++.+++|+|++||||||+++.|+..+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45678999999999999999999998774
No 154
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.91 E-value=1.3e-08 Score=76.80 Aligned_cols=118 Identities=20% Similarity=0.351 Sum_probs=60.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC-------HHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-------SEVTIKL 88 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 88 (182)
..|.++++.|+|||||||+++.+...+ ++..++.|++.... +....... ....... ..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~----p~~~~~~~---~~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH----PDYDELLK---ADPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS----TTHHHHHH---HHCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc----cchhhhhh---hhhhhhHHHHHHHHHHHHHHH
Confidence 678999999999999999999999887 57788887652211 00000000 0011110 1122223
Q ss_pred HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHh-CCCCc-EEEEEecCHHHHHHHHHhhh
Q 030176 89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVT-KIEPE-FVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~-~~~~~-~vI~ld~~~~~l~~R~~~R~ 145 (182)
+...+. .+..+++|+..........+.+.+ ..... .++++.+|++..+.|..+|-
T Consensus 86 ~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 86 IEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred HHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 333332 355778898655544443233322 21222 36668999999999999986
No 155
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.91 E-value=1.5e-09 Score=91.91 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=71.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---------------------------cCCh
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---------------------------SGSE 65 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~---------------------------~~~~ 65 (182)
+-+++..++.+++|+|.+||||||+++.|+ |+...+.|.+.+.... +...
T Consensus 309 ~VSf~l~~GE~lglVGeSGsGKSTlar~i~---gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~t 385 (539)
T COG1123 309 DVSFDLREGETLGLVGESGSGKSTLARILA---GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMT 385 (539)
T ss_pred eeeeEecCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcccc
Confidence 346778999999999999999999999999 5544444433322211 0011
Q ss_pred hhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176 66 NGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGF----PRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (182)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~----~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~ 136 (182)
.+..+.+.+............+.+.+++...+...-+++.| ...+.|+.++++++..+|.++| +|+|...
T Consensus 386 V~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli-~DEp~Sa 459 (539)
T COG1123 386 VGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI-LDEPVSA 459 (539)
T ss_pred HHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEE-ecCCccc
Confidence 22222222222222222222233444444322212134444 4569999999999999998777 9999843
No 156
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.2e-09 Score=80.65 Aligned_cols=116 Identities=24% Similarity=0.407 Sum_probs=68.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHH------------------------cCChhhH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIK------------------------SGSENGT 68 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~------------------------~~~~~~~ 68 (182)
++++..+.+.+|+||+|||||||+..|+ |.+ .+..|+++.+..+ ++-....
T Consensus 24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~---G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~ 100 (251)
T COG0396 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIM---GHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSD 100 (251)
T ss_pred ceeEcCCcEEEEECCCCCCHHHHHHHHh---CCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHH
Confidence 5567899999999999999999999999 644 3444444322221 0001122
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHHhcC-----CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 69 MIQNMIKEGKIVP--SEVTIKLLQKAMEESG-----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~-----~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+++...+..+... .....+.+++.+..-. ..-.+-+||....+.+.++.+.+..+|+++| ||+|+
T Consensus 101 fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~I-LDE~D 172 (251)
T COG0396 101 FLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI-LDEPD 172 (251)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEE-ecCCC
Confidence 2222222211111 1122233333222211 1123466888889999999999999999988 99988
No 157
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.91 E-value=4.8e-08 Score=77.78 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC------ChhhHHHHHHHH-------------cCCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------SENGTMIQNMIK-------------EGKI 79 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~------~~~~~~~~~~~~-------------~~~~ 79 (182)
..|.+|+|+|++||||||+|..|++.||...+...|.+++.+..- +....+....+. .+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 467899999999999999999999999988554456666544421 111111111111 0111
Q ss_pred CCHHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEEe-cCHHHHHHHHHhhhccC
Q 030176 80 VPSEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFD-CSEEEMERRILNRNQVR 148 (182)
Q Consensus 80 ~~~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-~vI~ld-~~~~~l~~R~~~R~~~r 148 (182)
.+.+.+...+...+.. ..+...|++|..........+.... +. +.+++. .+.+...+|+..|....
T Consensus 170 ~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~---~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLEN---PNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcC---CCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 1112222223333332 2467889999755544333322212 22 233344 46699999999887543
No 158
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.91 E-value=3.7e-09 Score=93.13 Aligned_cols=121 Identities=23% Similarity=0.325 Sum_probs=73.2
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~ 74 (182)
+-+++++++..++|+|.+|||||||+|.|. |+..+..|.+ +++......+ ...++.+-+
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~---gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi 567 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLL---GLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENI 567 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHH
Confidence 446778999999999999999999999999 5444433333 2333322221 122222222
Q ss_pred HcC-CCCCHHHHHHHHHHH-----HHh-c-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 75 KEG-KIVPSEVTIKLLQKA-----MEE-S-GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 75 ~~~-~~~~~~~~~~~l~~~-----l~~-~-~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
..+ -..+++.+.++++.. +.+ + +.+..+-++ ...+++|+..+++++-.+|.++| ||+++..+
T Consensus 568 ~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl-LDEaTSaL 640 (709)
T COG2274 568 ALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL-LDEATSAL 640 (709)
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE-EeCccccc
Confidence 222 334445555554432 222 2 223333332 45569999999999998998777 99998443
No 159
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.90 E-value=2.2e-08 Score=78.77 Aligned_cols=92 Identities=25% Similarity=0.395 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---CC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---GN 98 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~ 98 (182)
.+++|+|.+||||||.++.| +.+||.++|. +|..++.+++....... ..
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 47999999999999998877 8999998875 67777777765544221 22
Q ss_pred CcEEEeCCCCC-----HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 99 DKFLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 99 ~~~ildg~~~~-----~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
-.+++|--... ......+.. .+... -+|||+|+.++|.+|+.+
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~-~~~~~-~ilFLdA~d~~LirRy~e 101 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRK-KGIDV-RILFLDASDEVLIRRYSE 101 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHh-cCCce-EEEEEECChHHHHHHHHh
Confidence 34455532111 111112222 23334 477899999999999997
No 160
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.89 E-value=3.2e-08 Score=74.80 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+++.+|+|+||+|||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5788999999999999999999998775
No 161
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.89 E-value=3.2e-09 Score=79.28 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=66.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHHHHHHcCChhh-----------HHHHHH---H
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLRAEIKSGSENG-----------TMIQNM---I 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~~~~~~~~~~~-----------~~~~~~---~ 74 (182)
+-++....+.+.+|.|++|+||||+.+.|+.-+ |...++.-|..++.......+| .+.++. .
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~F 99 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYF 99 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHH
Confidence 346667899999999999999999999999554 2223333222222221111111 111110 0
Q ss_pred HcCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176 75 KEGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (182)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~ 136 (182)
..-....+..+.+.+.++...-+...+ =+-+|...++|...+++++..+|+++| ||+|...
T Consensus 100 a~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v-lDEP~sG 163 (245)
T COG4555 100 ARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV-LDEPTSG 163 (245)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE-EcCCCCC
Confidence 000111111112222222211110011 022577889999999999999998777 9999743
No 162
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.87 E-value=1.7e-07 Score=78.53 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~ 61 (182)
.+|.+|+++|++||||||++..||..+|+..+...|.+++.+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr 295 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLR 295 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHH
Confidence 4689999999999999999999999999986544566555444
No 163
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.5e-09 Score=79.59 Aligned_cols=120 Identities=23% Similarity=0.381 Sum_probs=72.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---cCChhhHHHHH-----------HHHcC-
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGSENGTMIQN-----------MIKEG- 77 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~---~~~~~~~~~~~-----------~~~~~- 77 (182)
+-+..+.++..+++.||+|||||||.+.+| |+...+.+.+..+... ++.+.+..+++ -...+
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A---Gf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL 99 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIA---GFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGL 99 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHh---cCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHH
Confidence 445677899999999999999999999999 8776666655332221 11222222221 01111
Q ss_pred --CCCCHHHHHHHHHHHH----HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 78 --KIVPSEVTIKLLQKAM----EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 78 --~~~~~~~~~~~l~~~l----~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
.-++.....+...+.+ .+...+.+ +-.....+.|+.-+++++..+|++++ +|+|...+
T Consensus 100 ~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSGGmrQRvGiARALa~eP~~Ll-LDEPfgAl 163 (259)
T COG4525 100 QLRGIEKAQRREIAHQMLALVGLEGAEHKY-IWQLSGGMRQRVGIARALAVEPQLLL-LDEPFGAL 163 (259)
T ss_pred HhcCCCHHHHHHHHHHHHHHhCcccccccc-eEeecchHHHHHHHHHHhhcCcceEe-ecCchhhH
Confidence 1122222223333333 23222333 22345679999999999999999887 99998443
No 164
>COG4639 Predicted kinase [General function prediction only]
Probab=98.87 E-value=5.6e-08 Score=69.68 Aligned_cols=111 Identities=21% Similarity=0.156 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN 98 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~ 98 (182)
..+++++|+|||||||.++... .....++.+++-...-.. ..+. ...-.++.+.+.+...+.+ ..+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~~-------~~~e---~sqk~~~~~~~~l~~~l~qrl~~G 69 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGVS-------ASKE---NSQKNDELVWDILYKQLEQRLRRG 69 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhhc-------hhhh---hccccHHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999988532 256667766653332110 0000 1112223334444433333 236
Q ss_pred CcEEEeCCCCC---HHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 99 DKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 99 ~~~ildg~~~~---~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+..|+|-.... .++...++..++-.. +.|+||.|.+.|.+|.+.|
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR 117 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence 77889987644 444555666665444 6788999999999997644
No 165
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.86 E-value=1.7e-08 Score=78.96 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=28.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~ 57 (182)
+|+|+|++||||||+++.|.+.|+ ...++.|++++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998774 34566666665
No 166
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.86 E-value=8.8e-10 Score=94.66 Aligned_cols=119 Identities=21% Similarity=0.296 Sum_probs=69.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEe---cHHHHHHHHHH----cCCh----hhHHHHHHHHcC-C
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHL---SAGDLLRAEIK----SGSE----NGTMIQNMIKEG-K 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~---~~~di~~~~~~----~~~~----~~~~~~~~~~~~-~ 78 (182)
+++++++..++|+|++|||||||++.|...+. -..+ +..++ .+... ..++ ...++.+-+.-+ .
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~ 433 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP 433 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC
Confidence 45678999999999999999999999995442 1112 22333 22222 1111 122222222222 2
Q ss_pred CCCHHHHHHHHHHH-----HHh-cCC-CcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 79 IVPSEVTIKLLQKA-----MEE-SGN-DKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 79 ~~~~~~~~~~l~~~-----l~~-~~~-~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
..+++.+.+.++.. +.+ +++ +..+-+ | ....++|+..++|++-.+|+++| ||+|+.
T Consensus 434 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili-LDE~TS 499 (529)
T TIGR02868 434 DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL-LDEPTE 499 (529)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE-EeCCcc
Confidence 34555555555432 211 122 222222 1 44569999999999988998888 999873
No 167
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.86 E-value=9.9e-09 Score=77.98 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++.++.+|+|+||+|||||||++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999999999754
No 168
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.86 E-value=3.9e-08 Score=86.31 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH---HHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLL 89 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 89 (182)
..++.+|+++|.|||||||+++.|++.+. ..+++.|++ +...... ..+.++ .....+
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~-r~~l~~~--------------~~~~~~~r~~~~~~l 521 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV-RHGLNRD--------------LGFSDADRVENIRRV 521 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh-hhccCCC--------------CCCCHHHHHHHHHHH
Confidence 34689999999999999999999999873 456676554 3332211 111111 111111
Q ss_pred HHHHH--hcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 90 QKAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 90 ~~~l~--~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
..... ...+..+++|.......++..++......+..+|||++|.+.+++|.
T Consensus 522 ~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 522 AEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 11111 13356677776544566666665544333457899999999999994
No 169
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.85 E-value=1.2e-08 Score=80.76 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL 56 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~ 56 (182)
+++|+|++||||||+++.|+..++ ...+..|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 489999999999999999998774 4456666553
No 170
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.84 E-value=5.5e-09 Score=83.03 Aligned_cols=123 Identities=15% Similarity=0.229 Sum_probs=79.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHH--------------H---------------c
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEI--------------K---------------S 62 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di~~~~~--------------~---------------~ 62 (182)
-+++..++.+++|+|-+||||||+++.+...+.. ..+..|++..+.. + +
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnP 103 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNP 103 (316)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCC
Confidence 4677899999999999999999999999977652 2333333322111 1 1
Q ss_pred CChhhHHHHHHHHcCCCC-CHHHHHHHHHHHHHhcCCC--cEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 63 GSENGTMIQNMIKEGKIV-PSEVTIKLLQKAMEESGND--KFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~--~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
...++.++.+.+..+... ..+...+.+.+++...+-. .-+++.|| ..+.|+..++.++..+|+++| .|+|+.
T Consensus 104 v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI-ADEPTT 182 (316)
T COG0444 104 VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI-ADEPTT 182 (316)
T ss_pred hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE-eCCCcc
Confidence 123566666666654333 3343444455555442211 11355555 459999999999999999888 999984
Q ss_pred HH
Q 030176 136 EM 137 (182)
Q Consensus 136 ~l 137 (182)
.|
T Consensus 183 AL 184 (316)
T COG0444 183 AL 184 (316)
T ss_pred hh
Confidence 43
No 171
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.3e-08 Score=78.77 Aligned_cols=117 Identities=22% Similarity=0.359 Sum_probs=72.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------HHHHH------cCC---hhhHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------RAEIK------SGS---ENGTMIQ 71 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------~~~~~------~~~---~~~~~~~ 71 (182)
+.++.+.++..++|.|++|||||||++.|+ |+.....+.+. ..... ..+ -......
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~---GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~ 98 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLN---GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVE 98 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHc---CcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHH
Confidence 345677889999999999999999999998 54444433331 11111 000 0111222
Q ss_pred HHHHc---CCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKE---GKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+.. +...+.+.+.+.+.+.+........ .+. ....++|+..++..+..+|+++| ||+|+
T Consensus 99 ~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRvaIA~vLa~~P~ili-LDEPt 166 (235)
T COG1122 99 DEVAFGLENLGLPREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVLAMGPEILL-LDEPT 166 (235)
T ss_pred HHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeHHhhHHHHcCCCEEE-EcCCC
Confidence 22222 2345555566666666655332222 333 34569999999999999999888 99998
No 172
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.83 E-value=9.8e-09 Score=79.29 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=69.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHH-------HHHHHHcCC------hhhHHHHHH--
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDL-------LRAEIKSGS------ENGTMIQNM-- 73 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di-------~~~~~~~~~------~~~~~~~~~-- 73 (182)
+-+++++.+.++++.||+||||||+.+.+-.-. |-..++..++ ++..++..- +.-...++.
T Consensus 19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~ 98 (309)
T COG1125 19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT 98 (309)
T ss_pred eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHh
Confidence 345678999999999999999999999886332 2222222111 222222100 000000000
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhcCCCc-EEEeCCCC----CHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPR----NEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~~~-~ildg~~~----~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.-.-..++.+.+.+...+++..-+... -..+.||. .++|+.-+.++++.+|.+++ +|+|+
T Consensus 99 VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL-MDEPF 163 (309)
T COG1125 99 VPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL-MDEPF 163 (309)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe-ecCCc
Confidence 000122344555555555554433222 13666664 59999999999999998766 99997
No 173
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.82 E-value=5e-08 Score=72.20 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+.+|+|+||+||||||+++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 46899999999999999999997664
No 174
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=1.4e-08 Score=82.35 Aligned_cols=117 Identities=16% Similarity=0.230 Sum_probs=64.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc------C---------Ch
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS------G---------SE 65 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~------~---------~~ 65 (182)
-++++.++.+++|+|++|||||||++.|+..+ ..+.|.+.. ..... + ..
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~---~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~ 110 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIE---TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKK 110 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCC---CCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccC
Confidence 36678899999999999999999999999433 222222110 00010 0 01
Q ss_pred hhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 66 NGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..+...+..+.........+.+.+.+...+...-.++. +...+.|+..+++++..+|+++| +|+|+
T Consensus 111 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLi-lDEPt 182 (327)
T PRK11308 111 VGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVV-ADEPV 182 (327)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence 1222221111111122222223334444332111111233 34459999999999999998777 99998
No 175
>PHA00729 NTP-binding motif containing protein
Probab=98.81 E-value=3.7e-08 Score=75.44 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN 98 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~ 98 (182)
..|+|+|+||+||||||..|+++++.. .+..++..++... ....++.+...+.+....... ..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~--------------~~~fid~~~Ll~~L~~a~~~~~~~ 83 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQ--------------NSYFFELPDALEKIQDAIDNDYRI 83 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCC--------------cEEEEEHHHHHHHHHHHHhcCCCC
Confidence 479999999999999999999887621 2222211111100 011223333444444433221 12
Q ss_pred CcEEEeCCCCCHHH----------HHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEEN----------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q----------~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+|+|++...... ...+..++....+++++...+++.+.+++++|.
T Consensus 84 dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 84 PLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred CEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 34688874322111 112333343357789989999999999999986
No 176
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.81 E-value=9e-09 Score=81.67 Aligned_cols=120 Identities=19% Similarity=0.316 Sum_probs=72.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHH-------HHHHcCChhhHHHHHH--------
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLR-------AEIKSGSENGTMIQNM-------- 73 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~-------~~~~~~~~~~~~~~~~-------- 73 (182)
+.+++...+.+.+|+|.+|||||||.+.+-.-. |-..++..|+.. +.. ....++.+|.+
T Consensus 46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~R--r~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR--RKKISMVFQSFALLPHRTV 123 (386)
T ss_pred cceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHH--hhhhhhhhhhhccccchhH
Confidence 346678999999999999999999999886322 223333333322 111 12344555543
Q ss_pred HHc---C---CCCCHHHHHHHHHHHHHhcCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176 74 IKE---G---KIVPSEVTIKLLQKAMEESGNDKFLIDGF----PRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (182)
Q Consensus 74 ~~~---~---~~~~~~~~~~~l~~~l~~~~~~~~ildg~----~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~ 136 (182)
+++ | .-.+.+...+...+.+...+..+| -+.| ...++|+.-+++++..+|++++ +|+++..
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~-~~~yp~eLSGGMqQRVGLARAla~~~~IlL-MDEaFSA 194 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGY-ADKYPNELSGGMQQRVGLARALANDPDILL-MDEAFSA 194 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh-hhcCcccccchHHHHHHHHHHHccCCCEEE-ecCchhh
Confidence 111 1 113344444444454444332223 2333 4569999999999999999887 9999844
No 177
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.81 E-value=2.2e-07 Score=83.46 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=39.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~ 61 (182)
++.+.+|+|.||+||||||+++.||++|++.++++|.++|....
T Consensus 31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~ 74 (863)
T PRK12269 31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTL 74 (863)
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHH
Confidence 45557999999999999999999999999999999999887654
No 178
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.81 E-value=1.6e-08 Score=63.46 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l 45 (182)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 179
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=5.8e-09 Score=85.48 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=66.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhh-----------HHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENG-----------TMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~-----------~~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... ....+ ....+.+..
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~ 99 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVA---GLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAY 99 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHh
Confidence 35677899999999999999999999999 66555555442211100 00001 111111111
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+.....+.+.+.+..-+-.. ..+ .....++|+..+++++..+|++++ ||+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llL-LDEP~ 162 (356)
T PRK11650 100 GLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFL-FDEPL 162 (356)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 1 11222222233333333321111 123 344569999999999999998777 99998
No 180
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.81 E-value=7.9e-09 Score=80.82 Aligned_cols=116 Identities=15% Similarity=0.208 Sum_probs=63.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH---H-------cCChhhHHHHHHHHcCCCCCHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI---K-------SGSENGTMIQNMIKEGKIVPSE 83 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~ 83 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|.+..... . ..........+..........+
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~---Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~ 99 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVL---GLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKE 99 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHH
Confidence 35677899999999999999999999999 544344443321110 0 0000001112221111111222
Q ss_pred HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+++.........+. -...++..+.++..+++++..+|++++ +|+|+
T Consensus 100 ~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrv~laral~~~p~lll-LDEPt 148 (251)
T PRK09544 100 DILPALKRVQAGHLIDA-PMQKLSGGETQRVLLARALLNRPQLLV-LDEPT 148 (251)
T ss_pred HHHHHHHHcCChHHHhC-ChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 22232222211100000 123355679999999999988998777 99998
No 181
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=2.8e-09 Score=87.20 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=67.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|.+..+.... ....+. ...+.+..
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~ 101 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVA---GLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGY 101 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHH
Confidence 35667889999999999999999999999 76655555442211100 000111 11111111
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
+ ...+.+...+.+.+.+..-.... +.+. ....++|+..+++++..+|++++ ||+|..
T Consensus 102 ~l~~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL-LDEP~s 165 (351)
T PRK11432 102 GLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLL-FDEPLS 165 (351)
T ss_pred HHhHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCcc
Confidence 1 11222223333344433322111 1333 34459999999999999998877 999983
No 182
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.80 E-value=6.8e-10 Score=82.10 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=67.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHHHHHH----cCChhhHHHHHHHHc-------C
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLRAEIK----SGSENGTMIQNMIKE-------G 77 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~~~~~----~~~~~~~~~~~~~~~-------~ 77 (182)
+-++.++++.++.++||+||||||+.+.|.... |...+..-|+.+-... ....+|..+|++..- +
T Consensus 20 ~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeN 99 (223)
T COG2884 20 DVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYEN 99 (223)
T ss_pred CceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhh
Confidence 346778999999999999999999999998654 2222322222111000 011233333332100 0
Q ss_pred -------CCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 -------KIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 -------~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.-.+.+.+.+.+.+.+...+. ...+-+......+|+..++++....|.+++ .|+|+
T Consensus 100 VA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl-ADEPT 165 (223)
T COG2884 100 VALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL-ADEPT 165 (223)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe-ecCCC
Confidence 011223333333444433111 011122344569999999999988998777 89987
No 183
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.80 E-value=9.5e-08 Score=71.49 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.++.+|+|+||+|||||||++.|.+.+.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3678999999999999999999988763
No 184
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.79 E-value=9.8e-09 Score=82.35 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=64.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCC-----hhhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGS-----ENGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~-----~~~~~~~~~~~ 75 (182)
-++.+.++.+++|+||+|||||||++.|+ |+...+.|++.. .....-. .......+.+.
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 88 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLT---TLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLE 88 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHH
Confidence 35677899999999999999999999999 544444433211 1111000 00111111111
Q ss_pred c---CCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 E---GKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~---~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. ....+.....+.+.+.+..-+-. ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt 152 (302)
T TIGR01188 89 MMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF-LDEPT 152 (302)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 0 01112121122223333221110 11133456679999999999988998777 99998
No 185
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=9.9e-09 Score=81.14 Aligned_cols=119 Identities=21% Similarity=0.295 Sum_probs=69.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHH----HHHHcCChhhHHHHHH-------HHc
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLR----AEIKSGSENGTMIQNM-------IKE 76 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di~~----~~~~~~~~~~~~~~~~-------~~~ 76 (182)
+-++.++++.+++|.|.+|+|||||.+++- .+ |-..++..++.. ........+|+.+|.+ ...
T Consensus 24 ~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN-~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~ 102 (339)
T COG1135 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFE 102 (339)
T ss_pred cceEEEcCCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHh
Confidence 346678999999999999999999999875 22 222333322211 0111112233333332 000
Q ss_pred C-------CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-------KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-------~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+.+.+.+.+.+++.-.+-... .+.|| ..++|+..+++++..+|++++ +|+++
T Consensus 103 NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-~~~yP~qLSGGQKQRVaIARALa~~P~iLL-~DEaT 169 (339)
T COG1135 103 NVAFPLELAGVPKAEIKQRVAELLELVGLSDK-ADRYPAQLSGGQKQRVAIARALANNPKILL-CDEAT 169 (339)
T ss_pred hhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-hccCchhcCcchhhHHHHHHHHhcCCCEEE-ecCcc
Confidence 1 113444444555555543222222 34454 459999999999999998777 88876
No 186
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.78 E-value=5.1e-09 Score=77.79 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=61.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-hhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-ENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|++..+...... .... . ..... .+.+++...
T Consensus 18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~----~-~~~i~----~~~q~l~~~ 85 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLA---GLLKPSSGEILLDGKDLASLSPKE----L-ARKIA----YVPQALELL 85 (180)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCcCCHHH----H-HHHHh----HHHHHHHHc
Confidence 35667899999999999999999999999 6554555544322111000 0000 0 00000 000011111
Q ss_pred HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
-....... -...++..+.|+..+.+++..+|++++ +|+|+
T Consensus 86 gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~lll-lDEP~ 125 (180)
T cd03214 86 GLAHLADR-PFNELSGGERQRVLLARALAQEPPILL-LDEPT 125 (180)
T ss_pred CCHhHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 00000000 123456679999999999988998888 99998
No 187
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.77 E-value=6.4e-09 Score=79.39 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=63.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-HHHHH--cC----ChhhHHHHHHHH---cCCCCCHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-RAEIK--SG----SENGTMIQNMIK---EGKIVPSE 83 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-~~~~~--~~----~~~~~~~~~~~~---~~~~~~~~ 83 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|++. ..... .. ........+.+. .......+
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~---Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLC---GLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh---CCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence 35677899999999999999999999999 65555555542 11100 00 000111111111 00112222
Q ss_pred HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+.+...-......-+..++..++++..+++++..+|++++ +|+|+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~lll-lDEP~ 132 (213)
T PRK15177 83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYI-ADGKL 132 (213)
T ss_pred HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence 212222111100000011133456679999999999988998777 99985
No 188
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.77 E-value=4e-08 Score=82.23 Aligned_cols=120 Identities=22% Similarity=0.344 Sum_probs=75.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHHHHHH-HHcCCh-----------hhHHHHHHHHcC
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDLLRAE-IKSGSE-----------NGTMIQNMIKEG 77 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di~~~~-~~~~~~-----------~~~~~~~~~~~~ 77 (182)
-++....+..++|.||+|||||||++.|.... |-+.+|.-++-... ...+.. .|...++.-..+
T Consensus 355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~ 434 (580)
T COG4618 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG 434 (580)
T ss_pred ceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc
Confidence 35567889999999999999999999998554 45566665653211 111111 133333333334
Q ss_pred CCCCHHHHHHHH-----HHHHHh--cCCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 KIVPSEVTIKLL-----QKAMEE--SGNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 ~~~~~~~~~~~l-----~~~l~~--~~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+.+.+++.. .+++.+ .+.+..|=++ ....++|+..+++++..+|.++| ||+|.
T Consensus 435 ~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV-LDEPN 500 (580)
T COG4618 435 EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV-LDEPN 500 (580)
T ss_pred ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE-ecCCC
Confidence 445555444442 344443 2233343333 34569999999999988997666 99987
No 189
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.77 E-value=2e-08 Score=81.96 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=65.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------------HHHcCC-----hhhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------------EIKSGS-----ENGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------------~~~~~~-----~~~~~~~ 71 (182)
-++++.++.+++|.|++|||||||++.|+ |+...+.|.+..+ .+..-. .......
T Consensus 24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~---gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~ 100 (343)
T TIGR02314 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVF 100 (343)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHH
Confidence 35678899999999999999999999999 5444444432110 001000 0001111
Q ss_pred HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+... ...+.....+.+.+.+....-... .+. +...++|+..+++++..+|++++ +|+|+
T Consensus 101 eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-~~~~~~~LSgGqkQRV~IARAL~~~P~iLL-lDEPt 168 (343)
T TIGR02314 101 GNVALPLELDNTPKDEIKRKVTELLALVGLGDK-HDSYPSNLSGGQKQRVAIARALASNPKVLL-CDEAT 168 (343)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence 111100 112222222333333333221111 333 34459999999999999999888 99998
No 190
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.77 E-value=9.8e-09 Score=78.48 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=63.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~ 74 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|++.. .......+ ......+.+
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 96 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLT---GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHL 96 (220)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHH
Confidence 345678899999999999999999999999 543333332211 00000000 000111111
Q ss_pred Hc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. ....+.....+.+.+.+..-.-... ....++..+.|+..+++++..+|+++| +|+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll-lDEP~ 161 (220)
T cd03263 97 RFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL-LDEPT 161 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence 10 0111221112222233322111011 122355669999999999988998877 99998
No 191
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.9e-08 Score=81.27 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=78.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEecHHH-------HHHHHHHcCChhhHHHHH-----HHHcCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLSAGD-------LLRAEIKSGSENGTMIQN-----MIKEGK 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~~~d-------i~~~~~~~~~~~~~~~~~-----~~~~~~ 78 (182)
+++..++..|+|.|++||||||+++.|.+.+.. ..++..+ -+++.+..-.+....+.. ....+.
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~ 437 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC
Confidence 556788999999999999999999999966531 1111111 133333322222222222 222233
Q ss_pred CCCHHHHHHHHHHHHH-----hc--CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH--------HHHHHH
Q 030176 79 IVPSEVTIKLLQKAME-----ES--GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE--------EEMERR 140 (182)
Q Consensus 79 ~~~~~~~~~~l~~~l~-----~~--~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~--------~~l~~R 140 (182)
...++.+.+.++.+-. .. +.+.++-|+ +...+.++..+++.+-.+..+++ ||+|+ +.++++
T Consensus 438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l-LDEPTegLD~~TE~~vL~l 516 (573)
T COG4987 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL-LDEPTEGLDPITERQVLAL 516 (573)
T ss_pred CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE-ecCCcccCChhhHHHHHHH
Confidence 4567777777665432 21 234454443 56779999999999866766777 99998 344555
Q ss_pred HHhhh
Q 030176 141 ILNRN 145 (182)
Q Consensus 141 ~~~R~ 145 (182)
+.++-
T Consensus 517 l~~~~ 521 (573)
T COG4987 517 LFEHA 521 (573)
T ss_pred HHHHh
Confidence 55543
No 192
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.76 E-value=2e-08 Score=76.54 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567789999999999999999999999943
No 193
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.76 E-value=9.4e-09 Score=78.45 Aligned_cols=39 Identities=21% Similarity=0.493 Sum_probs=31.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
-++.++++..++|.|++|||||||.+.|. +..-.+.|++
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~ln---gl~d~t~G~i 61 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLN---GLVDPTSGEI 61 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHh---cccCCCcceE
Confidence 35678999999999999999999999998 4444444443
No 194
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.76 E-value=8.2e-09 Score=78.17 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44667889999999999999999999999943
No 195
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.5e-07 Score=72.77 Aligned_cols=117 Identities=18% Similarity=0.287 Sum_probs=64.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHcCCh-----hhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKSGSE-----NGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~~~~-----~~~~~~ 71 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++.. .......+ ......
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIV---GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVF 95 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHH
Confidence 35678899999999999999999999999 543333332211 00000000 011111
Q ss_pred HHHHcC----CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEG----KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+... ...+.+...+.+.+.+..-+-... -+..+...++|+..+++++..+|+++| +|+|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll-lDEPt 164 (235)
T cd03261 96 ENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL-YDEPT 164 (235)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-ecCCc
Confidence 111110 012222222233333333211111 112345569999999999998998777 99998
No 196
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.76 E-value=7.5e-08 Score=78.14 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=67.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcC---ChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSG---SENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (182)
+.+++|++||||||+++.|+..+. ..+++.||++.+..... ......++.+ .+.+.++++..+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~--------R~~i~~~le~~v 72 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQF--------RQELLKYLEHFL 72 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHH--------HHHHHHHHHHHH
Confidence 368999999999999999987775 34789999886443321 1112221111 145555555544
Q ss_pred HhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccC
Q 030176 94 EESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVR 148 (182)
Q Consensus 94 ~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r 148 (182)
.... .+..+...+. ...-+..+...+. +-.++||++++.+.+..|+..+...|
T Consensus 73 ~a~~-~g~~~~~~~~~~~~~~~~nv~~L~-~~g~vv~L~as~e~~~~rLi~~~Lsr 126 (340)
T TIGR03575 73 VAVI-NGSELSAPPGKTEGMWEDFVDCLK-EQGLIISSGASEAQGCHSLTKPAVSR 126 (340)
T ss_pred HHhc-CcccccCCcccchhhhHHHHHHHH-hCCeEEEcCCcHHHHHHHHhHHHHhC
Confidence 4432 2332332111 1222323323332 23478999999999999999765344
No 197
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.76 E-value=9.3e-09 Score=90.99 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=70.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~ 75 (182)
-+++++++..++|+|++|||||||++.|+ |+...+.|++ +++......+ ...++.+-+.
T Consensus 472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~---gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~ 548 (686)
T TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLL---GFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA 548 (686)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHh
Confidence 35678899999999999999999999999 5444444433 2222221111 1222233233
Q ss_pred cCCCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EGKIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
-+...+++.+.+.++.. +.. +.+ +..+-++ ....++|+..+++++-.+|+++| ||+|+
T Consensus 549 ~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLi-LDEpT 616 (686)
T TIGR03797 549 GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL-FDEAT 616 (686)
T ss_pred cCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 33335555555555432 211 222 2222222 45569999999999988998888 99998
No 198
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.76 E-value=1e-08 Score=83.32 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=65.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HH---HHc---C--------C
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AE---IKS---G--------S 64 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~---~~~---~--------~ 64 (182)
+-++++.++.+++|+|++|||||||++.|+ |+...+.|.+.. .. ... . .
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 115 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAII---GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM 115 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHH---CCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC
Confidence 446678999999999999999999999999 443333332211 00 000 0 0
Q ss_pred hhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCcEEEeCC----CCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 65 ENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDKFLIDGF----PRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~ildg~----~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+...+.. ....+.+...+.+.+.+..-....-+++.+ ...+.|+..+++++..+|+++| +|+|+
T Consensus 116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli-lDEPt 189 (331)
T PRK15079 116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII-CDEPV 189 (331)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 111111111111 111233333333344443322111123433 4459999999999999998888 99998
No 199
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.75 E-value=1.3e-09 Score=94.70 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=69.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|...+ ...|++ +++......+ ...++.+-+.-
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~ 445 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLL 445 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhc
Confidence 4567899999999999999999999998444 233332 2222221111 12222332333
Q ss_pred C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+++.+.+.++.. +.+ +++ +..+-++ ....++|+..++|++-.+|+++| ||+|+
T Consensus 446 g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili-LDE~T 513 (588)
T PRK11174 446 GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL-LDEPT 513 (588)
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 3 235566655555432 222 222 2222222 45569999999999988999888 99987
No 200
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.75 E-value=2.1e-08 Score=76.30 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567789999999999999999999999943
No 201
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.75 E-value=1.4e-08 Score=83.13 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=67.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhh-----------HHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENG-----------TMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~-----------~~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|.+..+.... ....+ .+..+.+..
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~ 99 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIA---GLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAY 99 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHH---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHH
Confidence 35667889999999999999999999999 76555555432211000 00001 111111111
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
+ ...+.....+.+.+.+..-+-.. .++. ....++|+..+++++..+|++++ ||+|..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llL-LDEP~s 163 (353)
T TIGR03265 100 GLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLL-LDEPLS 163 (353)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCcc
Confidence 1 11222222333344443322112 2333 34559999999999999998777 999983
No 202
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.75 E-value=1e-08 Score=77.43 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=62.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~ 74 (182)
+-++.+.++.+++|+|++|||||||.+.|+ |....+.|.+.. .......+ ......+.+
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 94 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILA---GLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHH
Confidence 335677899999999999999999999999 443333332211 11000000 001111111
Q ss_pred HcC-CCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KEG-KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~~-~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
... .....+.+.+++...-.....+. ....++..++|+..+++++..+|+++| +|+|+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~lll-lDEPt 153 (201)
T cd03231 95 RFWHADHSDEQVEEALARVGLNGFEDR-PVAQLSAGQQRRVALARLLLSGRPLWI-LDEPT 153 (201)
T ss_pred HhhcccccHHHHHHHHHHcCChhhhcC-chhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 111 11112222222222111100011 123456679999999999998998777 99997
No 203
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.74 E-value=3.1e-08 Score=75.28 Aligned_cols=30 Identities=33% Similarity=0.466 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 356778999999999999999999999994
No 204
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=1.6e-08 Score=76.84 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=60.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~~ 75 (182)
-++++.++ +++|+|++|||||||++.|+ |+...+.|.+.. .......+ ......+.+.
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 94 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILA---TLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD 94 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHH
Confidence 35666778 99999999999999999999 543333332211 11110000 0001111110
Q ss_pred c---CCCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 E---GKIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~---~~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. ....+.+...+.+.+.+..-+-.. .....++..++|+..+++++..+|++++ +|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll-lDEPt 158 (211)
T cd03264 95 YIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI-VDEPT 158 (211)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 0 000111111122222222211101 1123355669999999999999998888 99997
No 205
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.74 E-value=2.7e-08 Score=75.71 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=63.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHcCChh-----hHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKSGSEN-----GTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~~~~~-----~~~~~ 71 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|++.. .......+. .....
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 97 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLY---GALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVY 97 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHH
Confidence 35678899999999999999999999999 543333333211 111100000 01111
Q ss_pred HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+... .........+.+.+.+..-.-... ....+...+.|+..+++++..+|+++| ||+|+
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll-LDEPt 165 (214)
T TIGR02673 98 ENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL-ADEPT 165 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE-EeCCc
Confidence 111100 001111112222333322111111 122355669999999999988998777 99998
No 206
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.74 E-value=1.5e-08 Score=81.52 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc--C---ChhhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS--G---SENGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~--~---~~~~~~~~~~~~ 75 (182)
-++.+.++.+++|.||+||||||+.+.|+ |....+.|++.. ..... + ........+.+.
T Consensus 26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~---Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~ 102 (306)
T PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLL---GLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLL 102 (306)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHH
Confidence 35677899999999999999999999999 544444433211 11110 0 000111112111
Q ss_pred ---cCCCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 ---EGKIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ---~~~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+.......+.+.+..-+. ...-+..+...++|+..+++++..+|+++| ||+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll-LDEPt 166 (306)
T PRK13537 103 VFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV-LDEPT 166 (306)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE-EeCCC
Confidence 00112222222222333322110 111134566779999999999999998777 99998
No 207
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.74 E-value=1.4e-08 Score=74.88 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=67.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhHHHHHH-------HHcCCC---
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGTMIQNM-------IKEGKI--- 79 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~~~~~~-------~~~~~~--- 79 (182)
..++.+.+++|.||+|||||||.+.+| ||.....|.++-...+. ..+..+.+++- +..+..
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIA---GF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIA---GFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHH---hccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 356889999999999999999999999 88777776664433331 12334444431 111100
Q ss_pred CC----HHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 80 VP----SEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 80 ~~----~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
.| .....+.++..+.+.+-.++ .+. ....++|+..+++.+..+--+++ ||+|+..+
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclvR~~PilL-LDEPFsAL 160 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLVREQPILL-LDEPFSAL 160 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHhccCCeEE-ecCchhhc
Confidence 01 12222333333333221122 333 33459999999988744322444 99998543
No 208
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=5.9e-09 Score=76.83 Aligned_cols=104 Identities=15% Similarity=0.261 Sum_probs=58.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|.+................. .-+....+... ....
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~--~i~~~~~~~~~---~~~t 91 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLL---RLYDPTSGEILIDGVDLRDLDLESLRK--NIAYVPQDPFL---FSGT 91 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHH---cCCCCCCCEEEECCEEhhhcCHHHHHh--hEEEEcCCchh---ccch
Confidence 346678899999999999999999999999 554444444322110000000000000 00000000000 0000
Q ss_pred HHhcCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 93 MEESGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 93 l~~~~~~~~ildg-~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. .|. ++..++++..+.+++..+|++++ +|+|+
T Consensus 92 ~---------~e~lLS~G~~~rl~la~al~~~p~lll-lDEP~ 124 (171)
T cd03228 92 I---------RENILSGGQRQRIAIARALLRDPPILI-LDEAT 124 (171)
T ss_pred H---------HHHhhCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 0 011 55678899999999988998777 99998
No 209
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.74 E-value=3.7e-08 Score=75.74 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=63.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-------HHcCChhhHHHHHHHHcC---CCCCHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-------IKSGSENGTMIQNMIKEG---KIVPSE 83 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~ 83 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++..+. .........+..+.+... .....+
T Consensus 41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~ 117 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLRLLA---GIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRK 117 (224)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 35678899999999999999999999999 54433333321110 000000011111111000 011112
Q ss_pred HHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 84 VTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 84 ~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+.+.+.+....-. ...+..++..++|+..+++++..+|+++| +|+|+
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll-lDEP~ 170 (224)
T cd03220 118 EIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL-IDEVL 170 (224)
T ss_pred HHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 2222222222221100 11123456679999999999988998887 99998
No 210
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.74 E-value=7.5e-09 Score=80.73 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=60.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------cCChhhHHHHHHHHcC---CCCCHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------SGSENGTMIQNMIKEG---KIVPSEVTI 86 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~ 86 (182)
.+.++.+++|+|++|||||||++.|+ |....+.|.+..+... ..........+.+... .........
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~---G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 97 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLA---GVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT 97 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHh---CCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence 45678999999999999999999999 6544444444221100 0000011111211110 000111111
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+++...-.....+ .-+..++..+.|+..+++++..+|++++ +|+|+
T Consensus 98 ~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~lll-lDEPt 143 (246)
T cd03237 98 EIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYL-LDEPS 143 (246)
T ss_pred HHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 2222110000000 0123456679999999999999998887 99998
No 211
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.74 E-value=2.1e-08 Score=76.23 Aligned_cols=30 Identities=43% Similarity=0.499 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999993
No 212
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=6.3e-09 Score=79.09 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=64.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHc--CC---hhhHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKS--GS---ENGTMIQNMIK 75 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~--~~---~~~~~~~~~~~ 75 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|.+..+. ... +. ..+....+.+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~---gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIA---GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 456778999999999999999999999999 54333333321110 000 00 00112222222
Q ss_pred cCCC--CC-HHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EGKI--VP-SEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~~~--~~-~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.... .. .....+.+.+.+...+-.. .....++..++|+..+++++..+|+++| +|+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll-lDEP~ 156 (211)
T cd03298 93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL-LDEPF 156 (211)
T ss_pred cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 1110 00 0111112222222211100 1123466679999999999988998877 99998
No 213
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.74 E-value=2.6e-08 Score=75.34 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=66.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH--c-CC-hhhHHHHHHHHcCCCCCHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK--S-GS-ENGTMIQNMIKEGKIVPSEVTIK 87 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
+-++.+.++.+++|+|++|||||||++.|+ |....+.|.+..+. .. . .. -...+..+.+........+...+
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~---G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~ 99 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALL---GELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEK 99 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHh---CcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHH
Confidence 446678999999999999999999999999 65555555443221 00 0 00 00111112121121122222222
Q ss_pred HHH-----HHHHhc-CCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 88 LLQ-----KAMEES-GNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 88 ~l~-----~~l~~~-~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
.+. +.+... .+....++ .++..++|+..+++++..+|++++ +|+|+.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~lll-lDEP~~ 156 (204)
T cd03250 100 VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYL-LDDPLS 156 (204)
T ss_pred HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EeCccc
Confidence 211 111111 11111122 345669999999999999998887 999983
No 214
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.74 E-value=2.1e-08 Score=76.60 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=27.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999999999943
No 215
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.73 E-value=1.4e-09 Score=76.91 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=26.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++.+.++.+++|+|++|||||||.+.|+..
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEEccCCCccccceeeeccc
Confidence 456678999999999999999999999943
No 216
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.73 E-value=7e-09 Score=90.07 Aligned_cols=117 Identities=17% Similarity=0.279 Sum_probs=69.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~ 75 (182)
-+++++++..++|+|++|||||||++.|+..+ .++.|++ +++.....++ ...++.+-+.
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 438 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFY---DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh
Confidence 35567899999999999999999999999554 2332222 1222221111 1222333233
Q ss_pred cCC--CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EGK--IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~~--~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+. ...++.+.+.++.. +.. +++ +..+-++ .+..+.|+..+++++-.+|+++| +|+|+
T Consensus 439 ~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili-lDEpt 508 (582)
T PRK11176 439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI-LDEAT 508 (582)
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE-EECcc
Confidence 221 24555555554432 211 122 2222221 45569999999999988898888 99997
No 217
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.73 E-value=8.1e-09 Score=78.17 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=62.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------HH----HH--cCCh----hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------AE----IK--SGSE----NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------~~----~~--~~~~----~~~~~~~~~~~ 76 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|.+.. .. .. .+.. ......+.+..
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~ 95 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILA---GLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLL 95 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhh
Confidence 35677899999999999999999999999 543333332210 00 00 0000 00111111111
Q ss_pred CC-CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. ....+ .+.+.+.+..-+-... ....++..++|+..+++++..+|++++ +|+|+
T Consensus 96 ~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-lDEPt 154 (205)
T cd03226 96 GLKELDAG--NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI-FDEPT 154 (205)
T ss_pred hhhhcCcc--HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEE-EeCCC
Confidence 10 00100 0112222222111111 123455679999999999988998777 99998
No 218
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.73 E-value=1.7e-08 Score=82.91 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=66.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH--HHHHHHHHHc------CChh-----------hHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKS------GSEN-----------GTMIQNMI 74 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~--~di~~~~~~~------~~~~-----------~~~~~~~~ 74 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+. |++..+.... .... .....+.+
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl 100 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIA---GFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV 100 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHH
Confidence 35567889999999999999999999999 7655555 4432111000 0000 11111111
Q ss_pred Hc---CCCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KE---GKIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. ....+.......+.+.+..-.-... .+. ....++|+..+++++..+|++++ ||+|.
T Consensus 101 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSgGq~QRvaLARAL~~~P~llL-LDEP~ 165 (362)
T TIGR03258 101 AFGLRAQKMPKADIAERVADALKLVGLGDA-AAHLPAQLSGGMQQRIAIARAIAIEPDVLL-LDEPL 165 (362)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCch-hhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCcc
Confidence 10 0112333233333444433221111 333 44569999999999999998777 99998
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.73 E-value=4.9e-09 Score=77.41 Aligned_cols=103 Identities=14% Similarity=0.253 Sum_probs=58.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (182)
.++.+.++.+++|+|++|||||||++.|+ |....+.|.+..+.............. .-...+.+. .+...
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~---~i~~~~q~~--~~~~~-- 90 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGD---HVGYLPQDD--ELFSG-- 90 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHH---hccCCCCCeEEECCEEcccCCHHHHHh---heEEECCCC--ccccC--
Confidence 35677899999999999999999999999 544444444322110000000000000 000000000 00000
Q ss_pred HhcCCCcEEEeC-CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 94 EESGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 94 ~~~~~~~~ildg-~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+. ++..+.|+..+++++..+|+++| +|+|+
T Consensus 91 -------tv~~~lLS~G~~qrv~la~al~~~p~~ll-lDEPt 124 (173)
T cd03246 91 -------SIAENILSGGQRQRLGLARALYGNPRILV-LDEPN 124 (173)
T ss_pred -------cHHHHCcCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence 00011 55678999999999988998777 99998
No 220
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.73 E-value=1.4e-08 Score=77.56 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=63.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~ 74 (182)
+-++.+.++.+++|+|++|||||||++.|+ |....+.|++.. .....-.+ ......+.+
T Consensus 23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLA---GLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENL 99 (218)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence 335677899999999999999999999999 543333332211 10100000 001111111
Q ss_pred H---cCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 K---EGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~---~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. .......+...+.+.+.+..-.-... -....+..++|+..+++++..+|++++ +|+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill-lDEPt 164 (218)
T cd03266 100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL-LDEPT 164 (218)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 0 00011111122222333322111011 122345669999999999988998777 99998
No 221
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=1.9e-08 Score=76.95 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=62.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHcCCh-----hhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKSGSE-----NGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~~~~-----~~~~~~~~~ 74 (182)
+-++.+.++.+++|+|++|||||||++.|+ |....+.|.+.. .......+ ......+.+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~---G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLT---TLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENL 94 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHH
Confidence 345677899999999999999999999999 543333332211 00000000 001111111
Q ss_pred Hc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. ..........+.+.+.+..-.-... -+..++..++|+..+++++..+|++++ +|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll-lDEPt 159 (220)
T cd03265 95 YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF-LDEPT 159 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 00 0011111111222222322111111 122355679999999999988998777 99998
No 222
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.72 E-value=1.5e-07 Score=73.36 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=27.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567789999999999999999999999943
No 223
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.72 E-value=1.1e-08 Score=77.96 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=63.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------HHHHc---CCh----hhHHHHHHHHcC
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------AEIKS---GSE----NGTMIQNMIKEG 77 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------~~~~~---~~~----~~~~~~~~~~~~ 77 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++.. ..... ... ......+.+...
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~ 94 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAIL---GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMG 94 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHc---CCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhc
Confidence 35678899999999999999999999999 543333333211 11110 000 011222222111
Q ss_pred CC-------CCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 KI-------VPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 ~~-------~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. ...+...+.+.+.+..-+-... -+..++..++|+..+++++..+|+++| +|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-lDEPt 160 (213)
T cd03235 95 LYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL-LDEPF 160 (213)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 10 0111111222222222110000 123455669999999999988998887 99998
No 224
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.72 E-value=1e-08 Score=83.97 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=65.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... .... .....+.+..
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~ 97 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAF 97 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHh
Confidence 35667889999999999999999999999 65444444432211000 0000 1111111111
Q ss_pred CC-------CCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-------IVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-------~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ..+.+...+.+.+.+..-.-..+ .+ .....++|+..+++++..+|++++ +|+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGq~QRvalArAL~~~P~llL-LDEP~ 164 (353)
T PRK10851 98 GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-ADRYPAQLSGGQKQRVALARALAVEPQILL-LDEPF 164 (353)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 10 11222223333344433211111 23 344569999999999999998777 99998
No 225
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.72 E-value=9.1e-09 Score=91.36 Aligned_cols=116 Identities=17% Similarity=0.321 Sum_probs=69.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|+..+ ..+.|.+ +++.....++ ...++.+-+.-
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l 575 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLY---QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence 4567899999999999999999999999544 2333222 2222221111 12222222222
Q ss_pred C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+++.+.+.++.. +.+ +.+ +..+-++ ...+++|+..+++++..+|+++| ||+|+
T Consensus 576 ~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ili-LDEpt 643 (710)
T TIGR03796 576 WDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI-LDEAT 643 (710)
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEE-EECcc
Confidence 2 234555555554432 222 222 2332222 45569999999999988998888 99998
No 226
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=1.3e-08 Score=77.38 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=63.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH------------HHHcCChh-----hHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA------------EIKSGSEN-----GTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~------------~~~~~~~~-----~~~~~~~~~~ 76 (182)
-++++.++.+++|+|++|||||||++.|+ |+...+.|.+..+ ......+. .....+.+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 95 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIA---GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAF 95 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHh
Confidence 35678899999999999999999999999 5433333322110 00000000 0111111110
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. .........+.+.+.+..-+-... ....++..++|+..+++++..+|+++| +|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll-lDEPt 158 (213)
T cd03259 96 GLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL-LDEPL 158 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 0 011111112222333332111111 122345569999999999988998777 99998
No 227
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.72 E-value=9.2e-08 Score=70.63 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
++.+++|+||+|+|||||++.|.+..++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l 30 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL 30 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe
Confidence 6889999999999999999999988753
No 228
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.72 E-value=1.5e-08 Score=83.65 Aligned_cols=116 Identities=17% Similarity=0.259 Sum_probs=65.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~ 76 (182)
-++.+.++.+++|.||+|||||||++.|+ |+...+.|.+..+.... ....+. .+.+.+..
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~ 109 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIA---GFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAF 109 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHH
Confidence 35667889999999999999999999999 66555544432211100 000111 11111111
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+.....+.+.+.+..-.-.. .++. ....++|+..+++++..+|++++ +|+|.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~~P~llL-LDEP~ 172 (375)
T PRK09452 110 GLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVNKPKVLL-LDESL 172 (375)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 1 11222222223333333211111 1333 44569999999999999998777 99998
No 229
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.72 E-value=4.1e-09 Score=93.53 Aligned_cols=116 Identities=21% Similarity=0.263 Sum_probs=69.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|+..+ ..+.|++ +++......+ ...++.+-+.-
T Consensus 494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l 570 (708)
T TIGR01193 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF---QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL 570 (708)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccC---CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence 5567889999999999999999999999544 2332222 2222221111 12233333332
Q ss_pred C--CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G--KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~--~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+++.+.+.++.. +.. +.+ +..+-++ ....++|+..+++++..+|+++| ||+|+
T Consensus 571 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ili-LDE~T 639 (708)
T TIGR01193 571 GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI-LDEST 639 (708)
T ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEE-EeCcc
Confidence 2 234555555554432 222 222 2332222 45669999999999988998888 99998
No 230
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=2e-08 Score=76.89 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=63.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HHcCCh-----hhHHHHHHHHc---
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IKSGSE-----NGTMIQNMIKE--- 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~~~~~-----~~~~~~~~~~~--- 76 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|.+..+. .....+ ......+.+..
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 99 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIA---GLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLE 99 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHH
Confidence 35677899999999999999999999999 54433444332110 000000 00011111110
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GKIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..........+.+.+.+..-+-.. .....++..++|+..+++++..+|+++| +|+|+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll-LDEPt 159 (220)
T cd03293 100 LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL-LDEPF 159 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence 001111111222233332211100 1123456679999999999988998887 99998
No 231
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.72 E-value=1.2e-08 Score=73.26 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=57.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (182)
+-++...++.+++|+|++|||||||++.|+ |....+.|.+..+. .
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~~-----------------------~--------- 62 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIA---GELEPDEGIVTWGS-----------------------T--------- 62 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECC-----------------------e---------
Confidence 335677899999999999999999999999 65444443331111 0
Q ss_pred HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
....++..++..+.++..+.+++..+|++++ +|+|+
T Consensus 63 -----~~i~~~~~lS~G~~~rv~laral~~~p~ill-lDEP~ 98 (144)
T cd03221 63 -----VKIGYFEQLSGGEKMRLALAKLLLENPNLLL-LDEPT 98 (144)
T ss_pred -----EEEEEEccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 0112222366678888899999888898777 99997
No 232
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.71 E-value=1.7e-08 Score=87.88 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=70.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcCC
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEGK 78 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~~ 78 (182)
-+++++++..++|+|++|||||||++.|++.+. -..++..++ +++....-++ ...++.+-+.-+.
T Consensus 360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~ 439 (592)
T PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR 439 (592)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC
Confidence 356678999999999999999999999995552 122222111 2222221111 1122333233333
Q ss_pred CCCHHHHHHHHHHHH-----Hh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 IVPSEVTIKLLQKAM-----EE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~~~~~~~~~~l~~~l-----~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+++.+.++++... .. ++ .+..+-++ ++..+.|+..+++++..+|+++| +|+|+
T Consensus 440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill-lDEpt 504 (592)
T PRK10790 440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI-LDEAT 504 (592)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence 455666555554322 11 11 12222221 44569999999999988898777 99997
No 233
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.71 E-value=1.6e-08 Score=76.94 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=62.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHcCCh-----hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKSGSE-----NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~~~~-----~~~~~~~~~~~ 76 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|.+..+. .....+ ......+.+..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 95 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIA---GLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAF 95 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHH
Confidence 35677899999999999999999999999 44333333221100 000000 00011111110
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. .....+...+.+.+.+..-+-... ....++..++|+..+++++..+|++++ +|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll-lDEPt 158 (213)
T cd03301 96 GLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL-MDEPL 158 (213)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 0 011222222222333322111111 122355669999999999988998777 99998
No 234
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.71 E-value=5.8e-09 Score=78.90 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=27.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 33567789999999999999999999999943
No 235
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.71 E-value=2.3e-08 Score=82.12 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=64.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------H----HHHcCC-----hhhHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------A----EIKSGS-----ENGTM 69 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~----~~~~~~-----~~~~~ 69 (182)
+-++++.++.+++|+|++|||||||.+.|+ |+...+.|+++. . ...... ....+
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLN---RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 346678899999999999999999999999 544333332211 0 001000 00011
Q ss_pred HHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 70 IQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 70 ~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+.+..+ ...+.+...+.+.+.+...+-..+ ++. +...++|+..+++++..+|++++ +|+|+
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-~~~~p~~LSGGq~QRV~lARAL~~~p~iLL-lDEP~ 157 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-EHRYPDELSGGMQQRVGLARALAAEPDILL-MDEAF 157 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 11111100 112222223333344433221111 333 34569999999999999998777 99998
No 236
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=6.8e-09 Score=89.81 Aligned_cols=120 Identities=19% Similarity=0.250 Sum_probs=67.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecH---HHH----HHHHHHcCC----hhhHHHHHHHHcCC
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSA---GDL----LRAEIKSGS----ENGTMIQNMIKEGK 78 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~---~di----~~~~~~~~~----~~~~~~~~~~~~~~ 78 (182)
-+++++++.+++++||+|+||||+++.|.+-|. -.-+|. .++ ++..+.... -.+.++.+-+.-|.
T Consensus 487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~ 566 (716)
T KOG0058|consen 487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL 566 (716)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC
Confidence 356789999999999999999999998876552 112222 222 222222111 12333344344443
Q ss_pred C-CCHHHHHHHHHHH-----HHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 I-VPSEVTIKLLQKA-----MEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~-~~~~~~~~~l~~~-----l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. ..++.+....+.. +.+ +++-...+.. ....++|+.++++++-.+|.++| ||+-+
T Consensus 567 ~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI-LDEAT 632 (716)
T KOG0058|consen 567 DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI-LDEAT 632 (716)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE-Eechh
Confidence 3 2334333333221 111 1111111221 23459999999999988998887 88865
No 237
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=3e-08 Score=75.28 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=62.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH------HHHc-------CC--hhhHHHHHHHHc--
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA------EIKS-------GS--ENGTMIQNMIKE-- 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~------~~~~-------~~--~~~~~~~~~~~~-- 76 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++..+ .... .. .......+.+..
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 95 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMIL---GIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA 95 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHH
Confidence 36678899999999999999999999999 5433333322110 0000 00 001111111110
Q ss_pred -CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 -GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 -~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
....+.....+.+.+.+..-+-... -...+...++++..+++++..+|++++ +|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll-lDEP~ 156 (210)
T cd03269 96 QLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI-LDEPF 156 (210)
T ss_pred HHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 0111111122222333322111111 122355669999999999988998777 99998
No 238
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.71 E-value=2.3e-08 Score=73.86 Aligned_cols=118 Identities=14% Similarity=0.272 Sum_probs=70.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------------------------cCChhhHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------------------------SGSENGTM 69 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------------------------~~~~~~~~ 69 (182)
++....+..++|.|.+|||||||++.|+ |+.....|+++.+... +...+|..
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMla---Gmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqi 109 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLA---GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQI 109 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHh---cccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhH
Confidence 3455677889999999999999999999 8776666655332211 11122333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHh----cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176 70 IQNMIKEGKIVPSEVTIKLLQKAMEE----SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (182)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~ 136 (182)
++.-+..+-.+..+...+.+.+-+.. +++..+-+.-....++|+.++++++..+|.++| .|+....
T Consensus 110 Ld~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iII-aDeAl~~ 179 (267)
T COG4167 110 LDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIII-ADEALAS 179 (267)
T ss_pred hcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEE-ehhhhhh
Confidence 33333333333333333333443333 333333344445679999999999988998777 6554433
No 239
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=2.8e-08 Score=76.69 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999999999943
No 240
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.70 E-value=9.6e-09 Score=84.63 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=65.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHc--CC-h--hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKS--GS-E--NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~--~~-~--~~~~~~~~~~~ 76 (182)
-++++.++.+++|.|++|||||||++.|+ |+...+.|.+..+. ... +. . ......+.+..
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~ 98 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIA---GLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSF 98 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHh
Confidence 35677899999999999999999999999 65444444332110 000 00 0 01111111111
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+.+...+.+.+.+..-.-... ....+...++|+..+++++..+|++++ ||+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL-LDEPt 161 (369)
T PRK11000 99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPL 161 (369)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 1 112222222233333333211111 122345569999999999999998777 99998
No 241
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.2e-08 Score=84.25 Aligned_cols=118 Identities=16% Similarity=0.280 Sum_probs=67.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|.+..+.... ....+. ...+.+..
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~ 114 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLA---GFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAF 114 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 35667889999999999999999999999 66555554432111000 000111 11111111
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~ 136 (182)
+ ...+.....+.+.+.+..-.-.. ..+. ....++|+..+++++..+|++++ ||+|...
T Consensus 115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL-LDEP~s~ 179 (377)
T PRK11607 115 GLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLL-LDEPMGA 179 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCccc
Confidence 1 11222223333344443322111 1333 44559999999999999998777 9999833
No 242
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.70 E-value=6.6e-09 Score=76.27 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=63.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|.+..... ...+...++ ...+.. -+.+.
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~~---~~i~~~~q~-----~~~~~~----tv~~n 83 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALA---GLWPWGSGRIGMPEG---EDLLFLPQR-----PYLPLG----TLREQ 83 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCC---ceEEEECCC-----Cccccc----cHHHH
Confidence 335677899999999999999999999999 655555555433210 001110000 001100 11111
Q ss_pred HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
+... ....++..++++..+++++..+|++++ +|+|+..+
T Consensus 84 l~~~-----~~~~LS~G~~~rv~laral~~~p~~ll-lDEPt~~L 122 (166)
T cd03223 84 LIYP-----WDDVLSGGEQQRLAFARLLLHKPKFVF-LDEATSAL 122 (166)
T ss_pred hhcc-----CCCCCCHHHHHHHHHHHHHHcCCCEEE-EECCcccc
Confidence 1100 123456679999999999988998887 99998433
No 243
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.70 E-value=2.3e-08 Score=77.38 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=62.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc---CCh--hhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS---GSE--NGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~---~~~--~~~~~~~~~~ 75 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|.+.. ..... ... ......+.+.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 96 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLT---RLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLR 96 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHH
Confidence 35677899999999999999999999999 543333332211 00000 000 0111111111
Q ss_pred cC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. .........+.+.+.+..-+-... -...++..+.|+..+++++..+|+++| +|+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-lDEP~ 160 (236)
T TIGR03864 97 YHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLL-LDEPT 160 (236)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 00 111211122222333322111111 122345669999999999988998887 99997
No 244
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.6e-08 Score=82.49 Aligned_cols=118 Identities=23% Similarity=0.344 Sum_probs=72.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChh-----hHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSEN-----GTMIQNM 73 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~-----~~~~~~~ 73 (182)
+-+++++++..++|+|++||||||+.+.|+ |+.....|++ +++......+. +...++.
T Consensus 339 ~l~~t~~~g~~talvG~SGaGKSTLl~lL~---G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi 415 (559)
T COG4988 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLL---GFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415 (559)
T ss_pred CceeEecCCcEEEEECCCCCCHHHHHHHHh---CcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence 335677899999999999999999999999 5544444433 22222211111 1211222
Q ss_pred HHcCCCCCHHHHHHHHHHHHHh-----cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEGKIVPSEVTIKLLQKAMEE-----SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~-----~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.-......++.+.+.++..... +++ +..|-|+ ....+.|+..++|++..++++++ +|+|+
T Consensus 416 ~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l-lDEpT 484 (559)
T COG4988 416 LLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL-LDEPT 484 (559)
T ss_pred hccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE-ecCCc
Confidence 2222335566666666654332 122 3333332 44569999999999988788777 99987
No 245
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.70 E-value=1.6e-08 Score=89.68 Aligned_cols=116 Identities=18% Similarity=0.282 Sum_probs=69.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChh----hHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSEN----GTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~----~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|+..+ ..+.|++ +++......+. ..++.+-+.-
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~ 561 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY---QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIAL 561 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhC
Confidence 4567889999999999999999999999444 3333322 12222211111 2223332333
Q ss_pred CC-CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ..+++.+.+.++.. +.. +.+ +..+-++ ...+++|+..+++++-.+|+++| ||+|+
T Consensus 562 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ili-LDE~T 629 (694)
T TIGR03375 562 GAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL-LDEPT 629 (694)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 32 34555555554432 222 222 2222221 45569999999999988999888 99986
No 246
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.70 E-value=2.7e-08 Score=75.86 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 356678999999999999999999999993
No 247
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.70 E-value=1.8e-08 Score=77.10 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999993
No 248
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.69 E-value=2.8e-08 Score=75.04 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=62.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-------------HHHc-----CChhhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-------------EIKS-----GSENGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-------------~~~~-----~~~~~~~~~~~~ 74 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|++..+ .... .........+.+
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~ 95 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIA---GLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENC 95 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHH
Confidence 345678899999999999999999999999 5443333322111 1000 000011111111
Q ss_pred HcCC-CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 75 KEGK-IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 75 ~~~~-~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
.... ....+ ..+.+.+..-..... -+..++..+.++..+++++..+|+++| +|+|+.
T Consensus 96 ~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~li-lDEP~~ 156 (200)
T PRK13540 96 LYDIHFSPGA---VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL-LDEPLV 156 (200)
T ss_pred HHHHhcCcch---HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEE-EeCCCc
Confidence 1110 00011 112222221111011 122356679999999999988998887 999973
No 249
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.69 E-value=3.9e-08 Score=85.08 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChhhHHHHHHHHcCC--
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSENGTMIQNMIKEGK-- 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~~~~~~~~~~~~~-- 78 (182)
++.++++..++|+|++||||||+++.|+ |+..++.|++ ++.......+....+.+....+.
T Consensus 362 s~~i~~G~~~aivG~sGsGKSTl~~ll~---g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~ 438 (555)
T TIGR01194 362 DLRIAQGDIVFIVGENGCGKSTLAKLFC---GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE 438 (555)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc
Confidence 4567899999999999999999999999 4333333322 22222221222222222222221
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcEE---E------eCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 IVPSEVTIKLLQKAMEESGNDKFL---I------DGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~~~~~~~~~~l~~~l~~~~~~~~i---l------dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...++.+.+.++ ..+....+ - ......++|+..+++++..+|+++| +|+|+
T Consensus 439 ~~~~~~~~~~~~----~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili-lDE~t 498 (555)
T TIGR01194 439 HASLDNAQQYLQ----RLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL-FDEWA 498 (555)
T ss_pred chhHHHHHHHHH----HcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 111222222222 21111110 1 2244569999999999988999888 99988
No 250
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.69 E-value=2.4e-09 Score=79.45 Aligned_cols=104 Identities=18% Similarity=0.284 Sum_probs=59.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcC-CCCCHH-HHH-HHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPSE-VTI-KLL 89 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~l 89 (182)
+-++++.++.+++|.|++|||||||++.|+ |....+.|.+..+.. ..... ....... ...+.+ ... .-+
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~----~~~~~-~~~~~~~i~~~~q~~~~~~~tv 91 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLT---GDLKPQQGEITLDGV----PVSDL-EKALSSLISVLNQRPYLFDTTL 91 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHh---ccCCCCCCEEEECCE----EHHHH-HHHHHhhEEEEccCCeeecccH
Confidence 346678899999999999999999999999 544444443321100 00000 0000000 000000 000 000
Q ss_pred HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 90 ~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+. +....+..+.|+..+++++..+|+++| +|+|+
T Consensus 92 ~~~---------i~~~LS~G~~qrv~laral~~~p~~ll-lDEP~ 126 (178)
T cd03247 92 RNN---------LGRRFSGGERQRLALARILLQDAPIVL-LDEPT 126 (178)
T ss_pred HHh---------hcccCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence 110 033455678999999999988998887 99998
No 251
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.69 E-value=1.1e-07 Score=71.17 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356788999999999999999999999993
No 252
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=6.3e-08 Score=76.39 Aligned_cols=117 Identities=17% Similarity=0.308 Sum_probs=63.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHcCChhh------HHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKSGSENG------TMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~~~~~~------~~~~~~ 73 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|.+.. .....-.+.. ....+.
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~ 104 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMI---GIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYD 104 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHH
Confidence 35677899999999999999999999999 543333332211 1111000000 001111
Q ss_pred HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+... ...+.+...+.+.+.+..-+-... ....++..+.++..+++++..+|+++| +|+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-LDEPt 170 (269)
T PRK13648 105 VAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII-LDEAT 170 (269)
T ss_pred HHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 1100 111222222223333332111111 122345569999999999988999888 99998
No 253
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.69 E-value=2.3e-08 Score=80.24 Aligned_cols=117 Identities=12% Similarity=0.161 Sum_probs=63.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-------------HHHHc--C---ChhhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-------------AEIKS--G---SENGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-------------~~~~~--~---~~~~~~~~~~~~ 75 (182)
-++.+.++.+++|+|++|||||||++.|+ |+...+.|++.. ..... + ........+.+.
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 99 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLL---GMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL 99 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHH
Confidence 35677899999999999999999999999 543333332211 11100 0 000111111111
Q ss_pred ---cCCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 ---EGKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ---~~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+.....+.+.+.+...... ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt 163 (303)
T TIGR01288 100 VFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI-LDEPT 163 (303)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 001122222222222223221100 11123456679999999999988998777 99998
No 254
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.6e-08 Score=78.02 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=64.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HH--cCC---hhhHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IK--SGS---ENGTMIQNMIK 75 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~--~~~---~~~~~~~~~~~ 75 (182)
+-++.+.++.+++|+|++|||||||++.|+ |....+.|.+..+. .. ... ..+....+.+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIA---GFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 446778899999999999999999999999 54333333321110 00 000 00112222222
Q ss_pred cCCC--C-CHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EGKI--V-PSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~~~--~-~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.... . ..+...+.+.+.+..-+-.. .....++..+.|+..+.+++..+|+++| +|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-LDEP~ 157 (232)
T PRK10771 94 LGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL-LDEPF 157 (232)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 1110 0 00111112222222211101 1123455679999999999988998877 99998
No 255
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.69 E-value=1.8e-08 Score=75.70 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=61.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----------c---C--ChhhHHHHHHHHcC-
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----------S---G--SENGTMIQNMIKEG- 77 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~----------~---~--~~~~~~~~~~~~~~- 77 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++..+... . . .....+..+.+...
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~ 95 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIA---GIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWS 95 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHH
Confidence 35677899999999999999999999999 5433333332211100 0 0 00001111111000
Q ss_pred CCC-CHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176 78 KIV-PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (182)
Q Consensus 78 ~~~-~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~ 136 (182)
... ..+.+.+++........ ...-...++..+.++..+.+++..+|++++ +|+|+..
T Consensus 96 ~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rl~la~al~~~p~~ll-lDEP~~~ 153 (195)
T PRK13541 96 EIYNSAETLYAAIHYFKLHDL-LDEKCYSLSSGMQKIVAIARLIACQSDLWL-LDEVETN 153 (195)
T ss_pred HhcccHHHHHHHHHHcCCHhh-hccChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCccc
Confidence 000 11111222211110000 000122356679999999999988998777 9999733
No 256
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1.4e-08 Score=78.71 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=63.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HH---cCCh--hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IK---SGSE--NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~---~~~~--~~~~~~~~~~~ 76 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|.+..+. .. .... ......+.+..
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 97 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIA---GLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAF 97 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhh
Confidence 35677899999999999999999999999 54333333321111 00 0000 01111111111
Q ss_pred CC---CC----CHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK---IV----PSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~---~~----~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. .. ......+.+.+.+..-..... .+..++..+.|+..+++++..+|+++| +|+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll-lDEP~ 164 (239)
T cd03296 98 GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPF 164 (239)
T ss_pred hhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 10 00 111111222222322111111 122356679999999999988998777 99998
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.69 E-value=3.5e-08 Score=73.18 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=57.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (182)
+-++++.++.+++|+||+|||||||.+.+...-|-..+... . ... . .....+-.+ .+.+...
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~-~-~~~--~------------~~~~~~~~q--~~~l~~~ 74 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISF-L-PKF--S------------RNKLIFIDQ--LQFLIDV 74 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCc-c-ccc--c------------cccEEEEhH--HHHHHHc
Confidence 34667899999999999999999999988532232222210 0 000 0 000001111 1222222
Q ss_pred HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCC--CcEEEEEecCH
Q 030176 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCSE 134 (182)
Q Consensus 93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~--~~~vI~ld~~~ 134 (182)
.........-....+..++++..+.+++..+ |++++ +|+|+
T Consensus 75 ~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llL-lDEPt 117 (176)
T cd03238 75 GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFI-LDEPS 117 (176)
T ss_pred CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEE-EeCCc
Confidence 1110000001223445689999999999888 98777 99998
No 258
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1.2e-08 Score=75.29 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=58.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHH---HHc-CCCCCHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM---IKE-GKIVPSEVTIKLL 89 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~l 89 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++..+...... ........ ... ....+...+.+-+
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~~ 94 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIIL---GLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL 94 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEccc-chHhhhccEEEEecCCccccCCcHHHHh
Confidence 35677899999999999999999999999 6544444443221100000 00000000 000 0000000000000
Q ss_pred HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 90 ~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. .+..+.|+..+++++..+|++++ +|+|+
T Consensus 95 ~---------------LS~G~~qrv~laral~~~p~ill-lDEPt 123 (173)
T cd03230 95 K---------------LSGGMKQRLALAQALLHDPELLI-LDEPT 123 (173)
T ss_pred h---------------cCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 0 55678899999999988998777 99998
No 259
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.68 E-value=4.1e-08 Score=75.85 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3356788999999999999999999999993
No 260
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.68 E-value=2e-08 Score=76.15 Aligned_cols=30 Identities=33% Similarity=0.391 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999993
No 261
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.68 E-value=2.9e-08 Score=79.61 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=65.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-------------HHHHHc-----CChhhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-------------RAEIKS-----GSENGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-------------~~~~~~-----~~~~~~~~~~~~~~ 76 (182)
++.+.++.+++|.||+||||||+++.|+ |....+.|.+. +..... ....+....+.+..
T Consensus 22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~---Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~ 98 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIIT---GYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQF 98 (301)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHH
Confidence 5677899999999999999999999999 55444444321 111110 00011112222111
Q ss_pred ---CCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 ---GKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ---~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
....+.+...+.+.+.+..-+-. ...+..++..++|+..+++++..+|+++| ||+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli-LDEPt 161 (301)
T TIGR03522 99 IAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI-LDEPT 161 (301)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 11122222222233333321111 11133466779999999999988998777 99998
No 262
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=4.3e-08 Score=80.01 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=63.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------------HHHHc--C-Ch--hhHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------------AEIKS--G-SE--NGTMI 70 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------------~~~~~--~-~~--~~~~~ 70 (182)
+-++++.++.+++|+|++|||||||++.|+ |+...+.|.+.. ..... + .. .....
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv 99 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCIN---LLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence 335678899999999999999999999999 544333332211 00000 0 00 00111
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 71 QNMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 71 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+... ...+.....+.+.+.+..-+-... -...+...++|+..+++++..+|++++ ||+|+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl-LDEPt 168 (343)
T PRK11153 100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL-CDEAT 168 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 1111100 112222222223333332111111 012344569999999999988998777 99998
No 263
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.68 E-value=4.5e-08 Score=77.22 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999999999999993
No 264
>PLN02165 adenylate isopentenyltransferase
Probab=98.68 E-value=1.4e-07 Score=76.10 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=34.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
...++.+++|+||+|||||||+..|++.++...++.|.+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 346677999999999999999999999999888888777
No 265
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.68 E-value=2.3e-08 Score=81.51 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=64.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-------------HHHHHc---C--ChhhHHHHHHHH-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-------------RAEIKS---G--SENGTMIQNMIK- 75 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-------------~~~~~~---~--~~~~~~~~~~~~- 75 (182)
++++.++.+++|+||+||||||+.+.|+ |+...+.|++. +..... . ........+.+.
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~---Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~ 137 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMIL---GMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV 137 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH---cCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHH
Confidence 5667899999999999999999999999 54433333221 110110 0 000111112111
Q ss_pred --cCCCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 --EGKIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 --~~~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+.....+.+.+.+...+- ...-+..+...++|+..+++++..+|+++| ||+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi-LDEPt 200 (340)
T PRK13536 138 FGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI-LDEPT 200 (340)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 00111222122222233322110 111133566779999999999998998877 99998
No 266
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.67 E-value=1.2e-08 Score=88.68 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=66.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChh----hHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSEN----GTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~----~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|+..+ ..+.|.+ +++......+. ..++.+-+..
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~ 436 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAW---DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL 436 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhc
Confidence 4567899999999999999999999999544 2333322 22222211111 1122222222
Q ss_pred CC-CCCHHHHHHHHHHHH-----HhcCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPSEVTIKLLQKAM-----EESGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~~~~~~~l~~~l-----~~~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ..+++.+.+.++..- .++++ +..+-++ .+..++|+..+++++..+|+++| +|+|+
T Consensus 437 ~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ili-lDE~t 503 (574)
T PRK11160 437 AAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL-LDEPT 503 (574)
T ss_pred CCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 21 234455544444321 11111 1222121 34569999999999988998888 99987
No 267
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.67 E-value=3.6e-08 Score=75.92 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred cceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3356778999999999999999999999993
No 268
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.67 E-value=4.9e-08 Score=76.89 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=27.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|.|++|||||||++.|+.
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4466789999999999999999999999993
No 269
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.67 E-value=5.6e-09 Score=77.50 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=56.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 95 (182)
+.+.++.+++|.|++|||||||++.|+ |+...+.|.+..+... .
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~----i----------------------------- 63 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILA---GQLIPNGDNDEWDGIT----P----------------------------- 63 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHH---cCCCCCCcEEEECCEE----E-----------------------------
Confidence 466889999999999999999999999 7655555544321100 0
Q ss_pred cCCCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 96 SGNDKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 96 ~~~~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
.++-. .....++|+..+++++..+|++++ +|+|+.
T Consensus 64 ----~~~~q~~~LSgGq~qrv~laral~~~p~lll-LDEPts 100 (177)
T cd03222 64 ----VYKPQYIDLSGGELQRVAIAAALLRNATFYL-FDEPSA 100 (177)
T ss_pred ----EEEcccCCCCHHHHHHHHHHHHHhcCCCEEE-EECCcc
Confidence 00000 055678999999999988998777 999983
No 270
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.67 E-value=3.6e-07 Score=70.83 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3356778999999999999999999999993
No 271
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.9e-08 Score=79.82 Aligned_cols=118 Identities=23% Similarity=0.385 Sum_probs=65.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CCh----hhHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GSE----NGTMIQN 72 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~~----~~~~~~~ 72 (182)
+-++.+.++.+++|+|++|||||||++.|+ |+...+.|++. +..... +.. ......+
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLID---GLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED 101 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence 345677899999999999999999999999 54333333221 111110 000 0111122
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 MIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..+ ...+.+...+.+.+.+...+-... ....++..+.|+..+++++..+|+++| +|+|+
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl-LDEPt 168 (279)
T PRK13650 102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII-LDEAT 168 (279)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence 12111 112222222233333333111111 122345569999999999999998887 99998
No 272
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.67 E-value=1.4e-08 Score=75.62 Aligned_cols=104 Identities=11% Similarity=0.143 Sum_probs=59.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC---------hhhHHHHHHHHcCCCCCHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS---------ENGTMIQNMIKEGKIVPSEVT 85 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 85 (182)
++.+.++.+++|+|++|||||||++.|+ |....+.|.+..+...... ..+...++.. .....+.-.+
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-~~~~~~~~t~ 95 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALF---GLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRK-REGLVLDLSV 95 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcc-cCcccCCCcH
Confidence 5667889999999999999999999999 6554555544222111000 0000000000 0000110011
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 86 ~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+-+.. .. .++..+.++..+++++..+|++++ +|+|+
T Consensus 96 ~e~l~~---~~--------~LS~G~~qrl~la~al~~~p~lll-lDEP~ 132 (182)
T cd03215 96 AENIAL---SS--------LLSGGNQQKVVLARWLARDPRVLI-LDEPT 132 (182)
T ss_pred HHHHHH---Hh--------hcCHHHHHHHHHHHHHccCCCEEE-ECCCC
Confidence 111110 00 066778999999999988998777 99997
No 273
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=5.8e-08 Score=76.88 Aligned_cols=117 Identities=14% Similarity=0.203 Sum_probs=64.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc--CCh----hhHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS--GSE----NGTMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~--~~~----~~~~~~~~ 73 (182)
-++.+.++.+++|+|++|||||||++.|+ |+...+.|++.. ..... +.. ....+.+.
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~ 100 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD 100 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHH
Confidence 35677899999999999999999999999 443333332211 11110 000 00111111
Q ss_pred HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+..+ .........+.+.+.+....-... ....+...++|+..+++++..+|++++ +|+|+
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll-lDEPt 166 (274)
T PRK13647 101 VAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV-LDEPM 166 (274)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence 1111 012222222223333322111111 123455669999999999999999888 99998
No 274
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.67 E-value=3.7e-08 Score=75.82 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=27.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466788999999999999999999999993
No 275
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.1e-08 Score=77.92 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456778999999999999999999999994
No 276
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.67 E-value=5.9e-09 Score=80.15 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=27.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+.++++.++.+++|+|++|||||||++.|+.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999999999999993
No 277
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.66 E-value=5.6e-08 Score=74.64 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------HH---cCCh-------hhHHHHHHHHcCC--
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------IK---SGSE-------NGTMIQNMIKEGK-- 78 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------~~---~~~~-------~~~~~~~~~~~~~-- 78 (182)
.+.++.+++|+|++|||||||++.|+ |....+.|++..+. .. ...+ ......+.+..+.
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAIL---GLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 45688999999999999999999999 54333333221111 00 0000 0111222221110
Q ss_pred ---C--CCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 ---I--VPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ---~--~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. .+.....+.+.+.+..-.-... .+..++..++|+..+.+++..+|+++| +|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lli-lDEP~ 141 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLL-LDEPF 141 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 0 0111111222333322111111 123455669999999999999998887 99998
No 278
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.66 E-value=7.6e-09 Score=91.88 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=69.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecH---HHH----HHHHHHcCCh----hhHHHHHHHHcC-
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSA---GDL----LRAEIKSGSE----NGTMIQNMIKEG- 77 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~---~di----~~~~~~~~~~----~~~~~~~~~~~~- 77 (182)
-+++++++..++|+|++||||||+++.|...+. -..++. .++ +++......+ ...++++-+.-+
T Consensus 500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~ 579 (711)
T TIGR00958 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL 579 (711)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC
Confidence 356678999999999999999999999995552 112221 111 1122221111 122233323323
Q ss_pred CCCCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 78 KIVPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 78 ~~~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
...+++.+.+.++.. +.+ +. .+..+-++ ....++|+..+++++-.+|+++| ||+|+.
T Consensus 580 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI-LDEpTS 646 (711)
T TIGR00958 580 TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI-LDEATS 646 (711)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EEcccc
Confidence 234455555554432 221 11 12222221 34569999999999988998888 999883
No 279
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.66 E-value=1.6e-08 Score=79.40 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=61.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------HH---HHc--CC-h--hhHHHHHHHHcCCC
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------AE---IKS--GS-E--NGTMIQNMIKEGKI 79 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------~~---~~~--~~-~--~~~~~~~~~~~~~~ 79 (182)
-++.+.++.+++|+|++|||||||++.|+ |+...+.|.+.. .. ... +. . ......+.+.....
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 107 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLA---GLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK 107 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc
Confidence 35667899999999999999999999999 543333333211 00 000 00 0 00111221111110
Q ss_pred CCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 80 VPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. . ..+.+.+.+..-+-... -...++..++|+..+.+++..+|+++| +|+|+
T Consensus 108 -~-~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll-LDEPt 161 (257)
T PRK11247 108 -G-Q-WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL-LDEPL 161 (257)
T ss_pred -c-h-HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 0 0 01112222222111111 122345669999999999988998887 99998
No 280
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=1.1e-08 Score=76.85 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=59.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHH----HcCChhhHHHHHHHHcCCCCCHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIK 87 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
-++++.++.+++|+|++|||||||++.|+ |.. ..+.|++..+.. ......+...++ ...++.-.+.+
T Consensus 26 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~----~~~~~~~tv~~ 98 (192)
T cd03232 26 ISGYVKPGTLTALMGESGAGKTTLLDVLA---GRKTAGVITGEILINGRPLDKNFQRSTGYVEQQ----DVHSPNLTVRE 98 (192)
T ss_pred cEEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCcCCCcceEEEECCEehHHHhhhceEEeccc----CccccCCcHHH
Confidence 35677899999999999999999999999 432 123332211100 000000000000 11111111111
Q ss_pred HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..... ++.++..+.|+..+++++..+|++++ +|+|+
T Consensus 99 ~l~~~~~--------~~~LSgGe~qrv~la~al~~~p~vll-lDEP~ 136 (192)
T cd03232 99 ALRFSAL--------LRGLSVEQRKRLTIGVELAAKPSILF-LDEPT 136 (192)
T ss_pred HHHHHHH--------HhcCCHHHhHHHHHHHHHhcCCcEEE-EeCCC
Confidence 1111100 11566779999999999988998777 99997
No 281
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=2.2e-07 Score=71.88 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=27.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356788999999999999999999999993
No 282
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.66 E-value=3.1e-08 Score=85.85 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=69.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecH---HHH----HHHHHHcCCh----hhHHHHHHHHcCC-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSA---GDL----LRAEIKSGSE----NGTMIQNMIKEGK- 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~---~di----~~~~~~~~~~----~~~~~~~~~~~~~- 78 (182)
++.++++..++|+|++|||||||++.|+..+. -..++. .++ +++....-++ ...++.+-+..+.
T Consensus 352 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 431 (571)
T TIGR02203 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT 431 (571)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC
Confidence 45678999999999999999999999995542 112221 111 1122221111 1222223233232
Q ss_pred -CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 -IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 -~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+++.+.+.++.. +.+ +++ +..+-++ .+..++|+..+++++..+|++++ ||+|+
T Consensus 432 ~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill-LDEpt 497 (571)
T TIGR02203 432 EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI-LDEAT 497 (571)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EeCcc
Confidence 35566666655542 222 122 2222222 45569999999999988898887 99998
No 283
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.66 E-value=7.1e-08 Score=74.07 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...++..|+|.|++|||||||++.++..+
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 46788899999999999999999998544
No 284
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.8e-08 Score=77.12 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=63.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HH--cCC-h--hhHHHHHHHHcC-
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IK--SGS-E--NGTMIQNMIKEG- 77 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~--~~~-~--~~~~~~~~~~~~- 77 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|.+..+. .. .+. . ......+.+...
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~ 95 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIA---GFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL 95 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHH
Confidence 345678899999999999999999999999 54433333332110 00 000 0 001111111100
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 --KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 --~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.........+.+.+.+..-+-... -...++..++|+..+++++..+|+++| +|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll-LDEPt 156 (255)
T PRK11248 96 QLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL-LDEPF 156 (255)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 011222112222333322111111 122345669999999999988998777 99998
No 285
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.65 E-value=1.9e-08 Score=79.76 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=65.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHH-------HHHHHcCChh----hHHHHHHHHcCC
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL-------RAEIKSGSEN----GTMIQNMIKEGK 78 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~-------~~~~~~~~~~----~~~~~~~~~~~~ 78 (182)
+-++.+.++.+++|+|++|||||||++.|+..+. -..++..++. +..+..-.+. ...+.+.+....
T Consensus 22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~ 101 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG 101 (275)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhcc
Confidence 3456789999999999999999999999995542 1122211111 1111110110 112222221111
Q ss_pred CCCHHHHHHHHHHHH-----Hh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 IVPSEVTIKLLQKAM-----EE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~~~~~~~~~~l~~~l-----~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...++.+.+.+.... .. ... ...+-+ .++..+.|+..+++++..+|++++ +|+|+
T Consensus 102 ~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill-lDEpt 166 (275)
T cd03289 102 KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL-LDEPS 166 (275)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECcc
Confidence 233444444433221 11 111 111111 145569999999999988998887 99997
No 286
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.65 E-value=8.3e-09 Score=78.95 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 22 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 22 NISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34567889999999999999999999999943
No 287
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.65 E-value=9.8e-09 Score=88.22 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=67.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|+..+ .++.|++ +++......+ ...++.+-+.-
T Consensus 342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~ 418 (529)
T TIGR02857 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL 418 (529)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhc
Confidence 5567899999999999999999999999444 3333322 1111111111 11222222222
Q ss_pred C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+++.+.+.++.. +.+ +++ +..+-+ .....++|+..+++++..+|+++| +|+|+
T Consensus 419 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili-lDE~t 486 (529)
T TIGR02857 419 ARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL-LDEPT 486 (529)
T ss_pred cCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE-EeCcc
Confidence 2 223445444444432 111 111 222112 145569999999999988998888 99987
No 288
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.65 E-value=4.1e-08 Score=75.75 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=63.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH---------H--cCC---hhhHHHHHHHHc---C
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI---------K--SGS---ENGTMIQNMIKE---G 77 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~---------~--~~~---~~~~~~~~~~~~---~ 77 (182)
++++.++.+++|+|++|||||||++.|+ |....+.|.+..+.. . .+. .......+.+.. .
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 5567889999999999999999999999 544333333321100 0 000 000111111110 0
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 --KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 --~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.........+.+.+.+..-+-... ....++..++|+..+.+++..+|+++| +|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt 142 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLL-LDEPF 142 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCC
Confidence 012222222222333322111111 122355669999999999988998777 99998
No 289
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=8.6e-08 Score=73.99 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999999999999993
No 290
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.65 E-value=8.1e-08 Score=73.83 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 356778999999999999999999999994
No 291
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.8e-07 Score=75.89 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=28.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+-++++.++.+++|.|++|||||||++.|+..+
T Consensus 25 ~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 346778999999999999999999999999544
No 292
>PRK10908 cell division protein FtsE; Provisional
Probab=98.65 E-value=1.6e-07 Score=71.90 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999993
No 293
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=2.1e-07 Score=72.22 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999993
No 294
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.65 E-value=2.8e-08 Score=78.28 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=64.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------HcCChhhHHHHHHHHc---CCCCCHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------KSGSENGTMIQNMIKE---GKIVPSE 83 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~ 83 (182)
+-++.+.++.+++|+|++|||||||++.|+ |....+.|.+..... ...........+.+.. ......+
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~ 118 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIG---GSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRK 118 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 345678899999999999999999999999 554444443321110 0000000111111110 0112222
Q ss_pred HHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 84 VTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 84 ~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+.+...+........ -+..++..+.++..+++++..+|+++| +|+|+
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLl-LDEPt 171 (264)
T PRK13546 119 EIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV-IDEAL 171 (264)
T ss_pred HHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEE-EeCcc
Confidence 222222333322111111 122355668899999999988898777 99998
No 295
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.65 E-value=1.5e-07 Score=71.92 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=27.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33567889999999999999999999999943
No 296
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4e-08 Score=72.62 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=67.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhh------------------HHHHH--
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG------------------TMIQN-- 72 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~------------------~~~~~-- 72 (182)
+-++.+..+..+.|+||+|||||||.+.|+ |+...+.|++.++......... .+..+
T Consensus 20 ~L~f~l~~Ge~~~i~G~NG~GKTtLLRila---GLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL 96 (209)
T COG4133 20 DLSFTLNAGEALQITGPNGAGKTTLLRILA---GLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL 96 (209)
T ss_pred ceeEEEcCCCEEEEECCCCCcHHHHHHHHH---cccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence 345667889999999999999999999999 7777777766544222111111 00000
Q ss_pred --HHHcCCCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 73 --MIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 73 --~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
+...+...+.+.+.+++...... ++ .| .....++.+..+++...-...+.| ||+|+..+
T Consensus 97 ~F~~~~~~~~~~~~i~~Al~~vgL~----g~-~dlp~~~LSAGQqRRvAlArL~ls~~pLWi-LDEP~taL 161 (209)
T COG4133 97 HFWQRFHGSGNAATIWEALAQVGLA----GL-EDLPVGQLSAGQQRRVALARLWLSPAPLWI-LDEPFTAL 161 (209)
T ss_pred HHHHHHhCCCchhhHHHHHHHcCcc----cc-cccchhhcchhHHHHHHHHHHHcCCCCcee-ecCccccc
Confidence 01101112333344444433222 11 22 124457888888888765566777 99998443
No 297
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1.4e-07 Score=75.79 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.2
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
+-++.+.++.+++|+|++|||||||++.|+
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 346677899999999999999999999999
No 298
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.64 E-value=3.1e-07 Score=71.01 Aligned_cols=93 Identities=26% Similarity=0.408 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---CC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---GN 98 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~ 98 (182)
.+|+|+|.+|||||+-++.| +.+|+.++|. +|.+++.+++.-..... ..
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 47999999999999988866 8899888775 77777777766443221 12
Q ss_pred CcEEEeC----CCCCHH-HHHHHHHHhCCCCcEEEEEecCHHHHHHHHHh
Q 030176 99 DKFLIDG----FPRNEE-NRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 99 ~~~ildg----~~~~~~-q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
-.+++|- ++.... ....+.......++ ++||+|+.++|.+|+..
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~-iLFLeA~~~~Lv~RY~e 102 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPR-VLFLEADDETLVRRYSE 102 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCce-EEEEECchhHHHHHHhh
Confidence 3444553 222222 22223222112354 66799999999999996
No 299
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=7.7e-08 Score=79.94 Aligned_cols=117 Identities=18% Similarity=0.265 Sum_probs=63.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------H----HHHc--CC---hhhHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------A----EIKS--GS---ENGTMI 70 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~----~~~~--~~---~~~~~~ 70 (182)
-++++.++.+++|+|++|||||||++.|+ |+...+.|.+.. . .+.. +. ......
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~---Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv 123 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLN---RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV 123 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHH---cCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCH
Confidence 35678899999999999999999999999 443333332211 0 0000 00 001111
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 71 QNMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 71 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+... ...+.+...+.+.+.+..-+-..+ ....+...++|+..+++++..+|++++ +|+|+
T Consensus 124 ~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL-LDEPt 192 (400)
T PRK10070 124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL-MDEAF 192 (400)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 1111110 011222222223333333211111 122344569999999999999998877 99998
No 300
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.9e-06 Score=66.52 Aligned_cols=123 Identities=17% Similarity=0.285 Sum_probs=74.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC------ChhhHHHHHHHHcCCC-CCH--------
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------SENGTMIQNMIKEGKI-VPS-------- 82 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~------~~~~~~~~~~~~~~~~-~~~-------- 82 (182)
++.|.+|+|=|+||+||||+|..||.++|+..+-..|.+++.+..- +...++..+++..-.. .++
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~ 165 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE 165 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence 5678899999999999999999999999999988888888887732 2233333333222111 111
Q ss_pred ---HHHHHHHHHHHHh--cCCCcEEEeCC---CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 83 ---EVTIKLLQKAMEE--SGNDKFLIDGF---PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 83 ---~~~~~~l~~~l~~--~~~~~~ildg~---~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+.+..-+...+.+ ..+..+|++|. |...+.- . ++.+....+..-.+++....|+.+|.
T Consensus 166 dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~-~----~~~n~~~~~l~i~dee~Hr~RF~~R~ 231 (299)
T COG2074 166 DQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE-A----LGNNVFMFMLYIADEELHRERFYDRI 231 (299)
T ss_pred HHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh-h----hccceEEEEEEeCCHHHHHHHHHHHH
Confidence 1122222222222 34667889983 4332221 1 11223334435678888999999985
No 301
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2.9e-07 Score=73.29 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=66.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH------------------HHHHHHcCCh------hhH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL------------------LRAEIKSGSE------NGT 68 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di------------------~~~~~~~~~~------~~~ 68 (182)
+-++++.++.+++|.|++|||||||++.|+ |....+.|++ ++.....-.+ ...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNIN---ALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED 101 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh
Confidence 346678899999999999999999999999 4433333322 1111111000 011
Q ss_pred HHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 69 MIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKF----LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 69 ~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~----ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+.+..+ ...+.+...+.+.+.+...+.... -...+...+.|+..+++++..+|+++| +|+|+
T Consensus 102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~ill-lDEPt 173 (286)
T PRK13646 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIV-LDEPT 173 (286)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence 222222111 112332333333444433221111 123345569999999999988998877 99998
No 302
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.64 E-value=6.3e-08 Score=82.23 Aligned_cols=121 Identities=16% Similarity=0.253 Sum_probs=78.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc-EecHHHHHHHHH--------------H---------------c
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEI--------------K---------------S 62 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~-~~~~~di~~~~~--------------~---------------~ 62 (182)
+-+++..++.+++|.|-+||||||++..|..-+... .+..|.++.+.. + +
T Consensus 27 ~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP 106 (539)
T COG1123 27 DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNP 106 (539)
T ss_pred cceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCc
Confidence 446778999999999999999999999998554433 222333311111 0 1
Q ss_pred CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 63 GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
....+.++.+.+..+.....+...+...+++...+ ..... +.|| ..+.|+..++.++..+|+++| +|+|+.
T Consensus 107 ~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheLSGG~rQRv~iAmALa~~P~LLI-aDEPTT 183 (539)
T COG1123 107 VMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQLSGGMRQRVMIAMALALKPKLLI-ADEPTT 183 (539)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCcccCchHHHHHHHHHHHhCCCCEEE-ECCCcc
Confidence 12356666666555554445555555555555422 11111 4454 459999999999999999888 999983
No 303
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=7.7e-08 Score=76.36 Aligned_cols=118 Identities=22% Similarity=0.364 Sum_probs=64.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc--CCh----hhHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS--GSE----NGTMIQN 72 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~--~~~----~~~~~~~ 72 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|++.. ..... +.. ....+.+
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~---G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 101 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLN---GLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD 101 (279)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH
Confidence 345677899999999999999999999999 443333332211 11110 000 0111111
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 MIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..+ ...+.+...+.+.+.+...+-... ....+...+.++..+++++..+|+++| +|+|+
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-LDEPt 168 (279)
T PRK13635 102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII-LDEAT 168 (279)
T ss_pred HHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 11111 112222222223333332111111 123455669999999999999998877 99998
No 304
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.64 E-value=1.2e-07 Score=73.49 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=27.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466788999999999999999999999994
No 305
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.64 E-value=3.2e-08 Score=80.38 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=28.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++++.++.+++|+|++|||||||++.|+..+
T Consensus 35 vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35678899999999999999999999999443
No 306
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.63 E-value=1.2e-07 Score=81.38 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDL 55 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-~~~~~~~di 55 (182)
..+.+|+|.|++||||||+++.|+..++ ...+..|+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 3457999999999999999999998774 234555554
No 307
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=3e-08 Score=76.99 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999999999999994
No 308
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=7.2e-08 Score=78.98 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~ 53 (182)
+-++++.++.+++|+|++|||||||++.|+ |+...+.|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia---Gl~~p~~G 53 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAIS---GLTRPQKG 53 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCce
Confidence 446677899999999999999999999999 55444443
No 309
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1e-07 Score=73.86 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=63.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH---------------HHHHHcCCh-----hhHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL---------------RAEIKSGSE-----NGTMIQN 72 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~---------------~~~~~~~~~-----~~~~~~~ 72 (182)
+-++++.++.+++|+|++|||||||++.|+ |....+.|.+. +.......+ ......+
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVV---GIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYD 97 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHH
Confidence 345677899999999999999999999999 54333333221 110110000 0111111
Q ss_pred HHHcC----CCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 MIKEG----KIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~~~~~----~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+... .....+.....+.+.+..-+-. ..-...++..+.|+..+++++..+|++++ +|+|+
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-lDEPt 165 (241)
T PRK10895 98 NLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL-LDEPF 165 (241)
T ss_pred HHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 11110 0111111112222222221100 11123456679999999999988998777 99998
No 310
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=8.9e-08 Score=75.58 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356678999999999999999999999993
No 311
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.63 E-value=2.7e-07 Score=70.74 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=28.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++++.++.+++|+|++|||||||++.|+..
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567789999999999999999999999943
No 312
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.63 E-value=1.4e-07 Score=71.59 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+.++++.++.+++|+|++|||||||++.|+.
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999999999999994
No 313
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=5.7e-08 Score=88.63 Aligned_cols=120 Identities=23% Similarity=0.341 Sum_probs=76.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----CCcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcC-C
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEG-K 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~-~ 78 (182)
.++...+..++|+||+||||||+...|.+-| |...+|..|+ +|..+....+ ...++.+-+.-| .
T Consensus 1010 ~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~ 1089 (1228)
T KOG0055|consen 1010 SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE 1089 (1228)
T ss_pred cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC
Confidence 4467899999999999999999999887666 4556665554 3444432222 234444444445 3
Q ss_pred CCCHHHHHHHHHHHHHh-------cCCCcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 79 IVPSEVTIKLLQKAMEE-------SGNDKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 79 ~~~~~~~~~~l~~~l~~-------~~~~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
..+.+.+.++++..-.. .+.+..+-| | ....++||.+++|++-.+|.+++ ||+-+.
T Consensus 1090 ~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL-LDEATS 1155 (1228)
T KOG0055|consen 1090 EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL-LDEATS 1155 (1228)
T ss_pred CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee-eeccch
Confidence 35667776666543221 112222222 1 34569999999999988998777 998763
No 314
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.62 E-value=4.3e-08 Score=77.28 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=28.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34667889999999999999999999999943
No 315
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.62 E-value=3.5e-08 Score=72.22 Aligned_cols=93 Identities=15% Similarity=0.244 Sum_probs=61.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (182)
+-++.+.++.+++|.|++|||||||++.|+ |....+.|.+..+.... ...+.. +.
T Consensus 18 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~v~~~g~~~---------------~~~~~~-------~~ 72 (163)
T cd03216 18 GVSLSVRRGEVHALLGENGAGKSTLMKILS---GLYKPDSGEILVDGKEV---------------SFASPR-------DA 72 (163)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEC---------------CcCCHH-------HH
Confidence 335678899999999999999999999999 76555554442211000 000000 01
Q ss_pred HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 93 l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+ ..++ +..+...+.|+..+++++..+|++++ +|+|+
T Consensus 73 ~~~--~i~~-~~qLS~G~~qrl~laral~~~p~ill-lDEP~ 110 (163)
T cd03216 73 RRA--GIAM-VYQLSVGERQMVEIARALARNARLLI-LDEPT 110 (163)
T ss_pred Hhc--CeEE-EEecCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 111 1223 33377789999999999988998777 99998
No 316
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=9.5e-08 Score=75.50 Aligned_cols=117 Identities=23% Similarity=0.413 Sum_probs=63.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CCh----hhHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GSE----NGTMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~~----~~~~~~~~ 73 (182)
-++.+.++.+++|+|++|||||||++.|+ |+...+.|++. +..... +.. ......+.
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 104 (271)
T PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILT---GLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDD 104 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHH
Confidence 35677899999999999999999999999 44333333221 111110 000 01111121
Q ss_pred HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+... .....+.....+.+.+..-+-... ....++..+.|+..+.+++..+|++++ +|+|+
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-LDEP~ 170 (271)
T PRK13632 105 IAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII-FDEST 170 (271)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 1111 112222222223333332111111 122355569999999999988998877 99998
No 317
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=4e-08 Score=75.35 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=70.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------cCCh-hhHHHHHHHHcCC--CCCH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------SGSE-NGTMIQNMIKEGK--IVPS 82 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------~~~~-~~~~~~~~~~~~~--~~~~ 82 (182)
+-+++..++..++|.|.+|||||||++.|+ |...++.|.+..+..- .+.+ .-.-.++....+. -...
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlklia---Gi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~ 121 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIA---GIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTR 121 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHh---CccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccH
Confidence 346678899999999999999999999999 7666666654221111 1100 0011111111111 0112
Q ss_pred HHHHHHHHHHH----HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH--------HHHHHHHHhh
Q 030176 83 EVTIKLLQKAM----EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE--------EEMERRILNR 144 (182)
Q Consensus 83 ~~~~~~l~~~l----~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~--------~~l~~R~~~R 144 (182)
+.+.+...+.. ..+--+.- +..|...+.-+..|.-+...+||++| +|+-. +.+.+|+.++
T Consensus 122 ~ei~~~~~eIieFaELG~fi~~P-vktYSSGM~aRLaFsia~~~~pdILl-lDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 122 KEIDEKVDEIIEFAELGDFIDQP-VKTYSSGMYARLAFSVATHVEPDILL-LDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCc-hhhccHHHHHHHHHhhhhhcCCCEEE-EehhhhcCCHHHHHHHHHHHHHH
Confidence 22222221111 11000011 33567778889999888889999988 88754 5566666655
No 318
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.62 E-value=8e-08 Score=73.90 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=68.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH----------HHHHcCC---------hhhHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR----------AEIKSGS---------ENGTMIQNMI 74 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~----------~~~~~~~---------~~~~~~~~~~ 74 (182)
-++..+++.+.++.|++|+||||..+.+. |+...+.|.+-+ +.++..+ ..-.++. ++
T Consensus 21 isf~v~~G~i~GllG~NGAGKTTtfRmIL---glle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~-yl 96 (300)
T COG4152 21 ISFEVPPGEIFGLLGPNGAGKTTTFRMIL---GLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLK-YL 96 (300)
T ss_pred eeeeecCCeEEEeecCCCCCccchHHHHh---ccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHH-HH
Confidence 35667899999999999999999999998 655554444322 1111110 0011111 12
Q ss_pred HcCCCCCHHHHHHHHHHHHHh---cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~---~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..-.-.+.+.+...+...+.+ .....--++......+|-..+...+..+|+++| ||+|+
T Consensus 97 a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlI-LDEPF 158 (300)
T COG4152 97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI-LDEPF 158 (300)
T ss_pred HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEE-ecCCc
Confidence 222334444444444444443 111222244555667777788888888999988 99997
No 319
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.62 E-value=1.6e-08 Score=76.07 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=61.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHHc-----CChhhHHHHHHHHcCCCCCHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKS-----GSENGTMIQNMIKEGKIVPSEVT 85 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
+-++.+.++.+++|+|++|||||||++.|+ |.. ..+.|.+..+.... ....+...++ ...++...+
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~---Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~----~~~~~~~t~ 99 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALA---GRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQD----DILHPTLTV 99 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCCceEEEECCEeCchHhhhheEEEccCc----ccCCCCCcH
Confidence 345677899999999999999999999999 554 44444432211100 0001111100 111111111
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 86 ~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+.... . +..+...+.++..+++++..+|++++ +|+|+
T Consensus 100 ~~~i~~~~-~-------~~~LS~G~~qrv~laral~~~p~ill-lDEP~ 139 (194)
T cd03213 100 RETLMFAA-K-------LRGLSGGERKRVSIALELVSNPSLLF-LDEPT 139 (194)
T ss_pred HHHHHHHH-H-------hccCCHHHHHHHHHHHHHHcCCCEEE-EeCCC
Confidence 11111100 0 11556678999999999988998777 99998
No 320
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.62 E-value=1.8e-08 Score=75.18 Aligned_cols=121 Identities=16% Similarity=0.281 Sum_probs=70.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHH--------H------HHHHHHcCChhhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGD--------L------LRAEIKSGSENGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~d--------i------~~~~~~~~~~~~~~~~~~~ 74 (182)
+.+.+++++.+-.|.||+|+|||||...+++-++ -..++.-+ + ++..+.. ..-...++..
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i--~~rlTV~dLv 96 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI--NSRLTVRDLV 96 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchh--hheeEHHHHh
Confidence 3456789999999999999999999988876553 22222211 1 1111110 1112223333
Q ss_pred HcC-------CCCC-H-HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 75 KEG-------KIVP-S-EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 75 ~~~-------~~~~-~-~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
..| +... + ..+-+.+..+-.. +-..-.+|.....+.|+..++..+.++-|+++ ||+|...|
T Consensus 97 ~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl-LDEPLNNL 166 (252)
T COG4604 97 GFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL-LDEPLNNL 166 (252)
T ss_pred hcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEEE-ecCccccc
Confidence 333 2222 1 2233333332222 22222477788889999999888888888877 99998443
No 321
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.62 E-value=4e-08 Score=74.50 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=61.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CC-h-hhHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GS-E-NGTMIQNMI 74 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~-~-~~~~~~~~~ 74 (182)
+-++.+.++.+++|.|++|||||||++.|+ |+...+.|.+. +..... +. . ......+.+
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALF---RFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHh---cccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHh
Confidence 345677899999999999999999999999 43322222221 111110 00 0 001121211
Q ss_pred HcCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
........+.+.+.+. - . . -...++..+.|+..+++++..+|+++| +|+|+
T Consensus 103 ~~~~~~~~~~~~~~l~----~-~--~-~~~~LS~G~~qrv~laral~~~p~lll-lDEP~ 153 (207)
T cd03369 103 DPFDEYSDEEIYGALR----V-S--E-GGLNLSQGQRQLLCLARALLKRPRVLV-LDEAT 153 (207)
T ss_pred cccCCCCHHHHHHHhh----c-c--C-CCCcCCHHHHHHHHHHHHHhhCCCEEE-EeCCc
Confidence 1111122222222221 0 0 0 123455668999999999988998888 99997
No 322
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.62 E-value=5.4e-08 Score=84.71 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=67.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
++.+.++..++|+|++|||||||++.|+..+ ..+.|++ +++.....++ ...++.+-+.-
T Consensus 355 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~---~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~ 431 (588)
T PRK13657 355 SFEAKPGQTVAIVGPTGAGKSTLINLLQRVF---DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431 (588)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhc
Confidence 4567889999999999999999999999544 2333222 1222221111 12222222222
Q ss_pred C-CCCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-KIVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-~~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ....++.+...++.. +.+ +.+ +..+-++ +...+.|+..+++++..+|+++| ||+|+
T Consensus 432 ~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili-LDEpt 499 (588)
T PRK13657 432 GRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI-LDEAT 499 (588)
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 2 234455554444332 222 122 2222221 45569999999999988998888 99987
No 323
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.62 E-value=6.2e-08 Score=83.70 Aligned_cols=115 Identities=21% Similarity=0.340 Sum_probs=63.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCChhhHHHHHHHHc-CCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSENGTMIQNMIKE-GKI 79 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (182)
+++++++..++|+|++|||||||++.|+ |+...+.|.+ +++......+....+...+.. +..
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~ 419 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLT---GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP 419 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCc
Confidence 5567899999999999999999999999 4433333322 111111111111222222211 112
Q ss_pred CCHHHHHHHHHHHHHhcC---CCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 80 VPSEVTIKLLQKAMEESG---NDKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 80 ~~~~~~~~~l~~~l~~~~---~~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..++.+.+.++..-.... ..+. ++ ..+..++|+..+++++..+|+++| +|+|+
T Consensus 420 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~G~~LSgGq~qRl~lARal~~~~~ili-lDE~t 477 (547)
T PRK10522 420 ANPALVEKWLERLKMAHKLELEDGR-ISNLKLSKGQKKRLALLLALAEERDILL-LDEWA 477 (547)
T ss_pred hHHHHHHHHHHHcCCchhhhccccC-CCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 223333333332211100 0000 11 245569999999999988999888 99987
No 324
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=3.1e-07 Score=73.20 Aligned_cols=118 Identities=21% Similarity=0.329 Sum_probs=66.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH----------------HHHHH--cCC---h-hhHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL----------------RAEIK--SGS---E-NGTMI 70 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~----------------~~~~~--~~~---~-~~~~~ 70 (182)
+-++++.++.+++|+|++|||||||++.|+ |+...+.|++. +.... .+. . .....
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 101 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLN---GLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI 101 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH
Confidence 335678899999999999999999999999 54433333221 11111 000 0 01112
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHHhcCCC-cEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 71 QNMIKEG---KIVPSEVTIKLLQKAMEESGND-KFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 71 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~-~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+..+ ...+.+...+.+.+.+...... .-..+ .++..++|+..+++++..+|+++| +|+|+
T Consensus 102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~lll-lDEPt 172 (287)
T PRK13637 102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILI-LDEPT 172 (287)
T ss_pred HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence 2211111 1123332333334444332211 01123 345569999999999998998877 99998
No 325
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=6.2e-09 Score=78.79 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=62.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE---ecHHHHHHHHHHc-------CChhhHHHHHHHHcCCCCCH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH---LSAGDLLRAEIKS-------GSENGTMIQNMIKEGKIVPS 82 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~---~~~~di~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 82 (182)
+-++.+.++.+++|+|++|||||||++.|+ |... .+.|++..+.... ....+...++ ...++.
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~----~~~~~~ 97 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALA---NRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEE----DVHFPT 97 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhc---ccCCCCCCcceEEEECCEECccchhhhcceEEEEecc----cccCCC
Confidence 335677899999999999999999999999 5433 3444432211100 0000000000 111111
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 83 ~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
-.+.+.+....... ... ....+...+.|+..+++++..+|++++ +|+|+
T Consensus 98 ~tv~~~l~~~~~~~-~~~-~~~~LS~Ge~qrl~laral~~~p~lll-lDEPt 146 (202)
T cd03233 98 LTVRETLDFALRCK-GNE-FVRGISGGERKRVSIAEALVSRASVLC-WDNST 146 (202)
T ss_pred CcHHHHHhhhhhhc-ccc-chhhCCHHHHHHHHHHHHHhhCCCEEE-EcCCC
Confidence 11122221111100 111 133456679999999999988998777 99998
No 326
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.61 E-value=5.8e-08 Score=74.84 Aligned_cols=29 Identities=31% Similarity=0.635 Sum_probs=26.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++++.++.+++|+|++|||||||++.|+.
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 34 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILG 34 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 56678999999999999999999999993
No 327
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.61 E-value=1.3e-07 Score=72.32 Aligned_cols=118 Identities=21% Similarity=0.226 Sum_probs=64.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-----------------HHHHHcCChh------hHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-----------------RAEIKSGSEN------GTM 69 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-----------------~~~~~~~~~~------~~~ 69 (182)
+-++.+.++.+++|+|++|||||||++.|+ |+...+.|++. +.......+. ...
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIG---GLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTA 99 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCH
Confidence 335667899999999999999999999999 54333322211 0111100000 011
Q ss_pred HHHHH---HcCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 70 IQNMI---KEGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 70 ~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.++.. ........+...+.+.+.+..-+.... ....++..+.|+..+.+++..+|++++ +|+|+
T Consensus 100 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ill-lDEP~ 169 (220)
T TIGR02982 100 RQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL-ADEPT 169 (220)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 11110 001112222222233333333111111 122355669999999999999998888 99998
No 328
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=2.7e-07 Score=73.62 Aligned_cols=118 Identities=21% Similarity=0.313 Sum_probs=65.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------------HHHHHc--CC---h-hhH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------------RAEIKS--GS---E-NGT 68 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------------~~~~~~--~~---~-~~~ 68 (182)
+-++++.++.+++|.|++|||||||++.|+ |....+.|.+. +..... +. . ...
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 100 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLN---GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE 100 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc
Confidence 446678999999999999999999999999 44333333221 111110 00 0 011
Q ss_pred HHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 69 MIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 69 ~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+.+..+ ...+.......+.+.+...+......+ ..+..++|+..+++++..+|+++| +|+|+
T Consensus 101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~ill-LDEPt 172 (288)
T PRK13643 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLV-LDEPT 172 (288)
T ss_pred hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence 112211111 112223233333444433221111122 345569999999999988998777 99998
No 329
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.61 E-value=1.3e-07 Score=81.93 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=72.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEe---cHHHH----HHHHHHcCCh----hhHHHHHHHHcCC
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THL---SAGDL----LRAEIKSGSE----NGTMIQNMIKEGK 78 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~---~~~di----~~~~~~~~~~----~~~~~~~~~~~~~ 78 (182)
-++.++++..++|+|++||||||+++.|.+-+.. ..+ +..++ +++.....++ ...++.+-+.-+.
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~ 427 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR 427 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC
Confidence 3556789999999999999999999999966642 122 12222 2222221111 1222333333343
Q ss_pred C-CCHHHHHHHHHHH-----HHh-cCCCcEEEe-C---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 I-VPSEVTIKLLQKA-----MEE-SGNDKFLID-G---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~-~~~~~~~~~l~~~-----l~~-~~~~~~ild-g---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. ..++.+.+.++.. +.+ +++-...+. + ....++|+..+++++-.+|.++| ||+++
T Consensus 428 ~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI-LDEaT 493 (567)
T COG1132 428 PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI-LDEAT 493 (567)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE-Eeccc
Confidence 2 4566666555543 222 222222233 2 34569999999999988898888 99987
No 330
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.61 E-value=2.4e-07 Score=72.32 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999999999999993
No 331
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.61 E-value=1.6e-07 Score=74.11 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999993
No 332
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.60 E-value=4.5e-08 Score=74.54 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=63.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHc---C--ChhhHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKS---G--SENGTMIQNMIK 75 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~---~--~~~~~~~~~~~~ 75 (182)
+-++.+.++.+++|.|++|||||||++.|+ |....+.|.++.+. ... . ...+.+..+.+.
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIA---GFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 345678899999999999999999999999 54433333221110 000 0 000111111111
Q ss_pred cC---CCCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EG---KIVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~---~~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. .........+.+.+.+..-+- .......++..+.|+..+++++..+|++++ +|+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-lDEPt 156 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL-LDEPF 156 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 10 001011111122222222110 011123456679999999999988998777 99998
No 333
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.60 E-value=4.4e-08 Score=73.81 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=27.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4667789999999999999999999999943
No 334
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.60 E-value=2.4e-08 Score=82.97 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=64.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH----------HH----HHc-----CChhhHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR----------AE----IKS-----GSENGTMIQNMI 74 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~----------~~----~~~-----~~~~~~~~~~~~ 74 (182)
-++.+.++.+++|.||+|||||||.+.|+ |+...+.|.+.. .. +.. .........+.+
T Consensus 22 vs~~i~~Geiv~liGpNGaGKSTLLk~La---Gll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v 98 (402)
T PRK09536 22 VDLSVREGSLVGLVGPNGAGKTTLLRAIN---GTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV 98 (402)
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHH
Confidence 35677899999999999999999999999 443333332210 01 110 000111222222
Q ss_pred HcCC-----CCC--HHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KEGK-----IVP--SEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~~~-----~~~--~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+. .+. .....+.+.+.+...+.... -+..+...++|+..+++++..+|++++ ||+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL-LDEPt 167 (402)
T PRK09536 99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL-LDEPT 167 (402)
T ss_pred HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence 2111 010 11122233333333111111 122355669999999999999998777 99998
No 335
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=7.8e-09 Score=76.67 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=58.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK-AM 93 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l 93 (182)
++++.++.+++|+|++|||||||++.|+ |....+.|++..+..... ............-...+.+. .+... .+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~i~~~~q~~--~~~~~~t~ 93 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIA---GLEEPDSGSILIDGEDLT-DLEDELPPLRRRIGMVFQDF--ALFPHLTV 93 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEEcc-ccchhHHHHhhcEEEEecCC--ccCCCCCH
Confidence 5677899999999999999999999999 654444444322111000 00000000000000000000 00000 00
Q ss_pred HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. . +.-.+...+.|+..+.+++..+|+++| +|+|+
T Consensus 94 ~~----~-l~~~lS~G~~qr~~la~al~~~p~lli-lDEP~ 128 (178)
T cd03229 94 LE----N-IALGLSGGQQQRVALARALAMDPDVLL-LDEPT 128 (178)
T ss_pred HH----h-eeecCCHHHHHHHHHHHHHHCCCCEEE-EeCCc
Confidence 00 0 000155678999999999988998777 99998
No 336
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.60 E-value=1.5e-06 Score=63.14 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=62.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg-~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
++=.+.+||||||++.+|++-|| +-++..|++-.+ ......+...+.|.......++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k----------------------~~~~f~~~~l~~L~~~~~~vVi 59 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK----------------------RKPKFIKAVLELLAKDTHPVVI 59 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC----------------------CHHHHHHHHHHHHhhCCCCEEE
Confidence 44468899999999999999999 888887766221 1122233334444445677899
Q ss_pred EeCCCCCHHHHHHHHHHhCC-CC-------cE----EEEEec-CH----HHHHHHHHhhh
Q 030176 103 IDGFPRNEENRAAFEAVTKI-EP-------EF----VLFFDC-SE----EEMERRILNRN 145 (182)
Q Consensus 103 ldg~~~~~~q~~~l~~~~~~-~~-------~~----vI~ld~-~~----~~l~~R~~~R~ 145 (182)
.|.......++.++...+.. .+ .+ +-|... +. +.+.+|+.+|.
T Consensus 60 aDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RG 119 (168)
T PF08303_consen 60 ADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARG 119 (168)
T ss_pred EeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcC
Confidence 99876666666665544311 11 11 222222 22 67788999986
No 337
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.60 E-value=7.3e-07 Score=68.48 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=28.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++++.++.+++|+|++|||||||++.|+..+
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35677899999999999999999999999554
No 338
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.60 E-value=3e-07 Score=70.52 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=27.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466788999999999999999999999993
No 339
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.60 E-value=3.6e-08 Score=87.42 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=68.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
++.++++..++|+|++|||||||++.|+..+ .++.|++ +++......+ ...++.+-+.-
T Consensus 477 ~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~---~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~ 553 (694)
T TIGR01846 477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY---TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIAL 553 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhc
Confidence 4567889999999999999999999999444 3333322 1222211111 12233332332
Q ss_pred C-CCCCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-KIVPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-~~~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+++.+.+.++.. +.+ +. .+..+-++ .+..++|+..+++++..+|+++| ||+|+
T Consensus 554 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili-lDEpt 621 (694)
T TIGR01846 554 CNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI-FDEAT 621 (694)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EECCC
Confidence 2 234455555444432 222 22 22332222 45569999999999988998888 99998
No 340
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=4.2e-07 Score=72.57 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=65.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------------------HHHH--cCC----hhhH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------------------AEIK--SGS----ENGT 68 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------------------~~~~--~~~----~~~~ 68 (182)
+-++++.++.+++|.|++|||||||++.|+ |....+.|++.. .... .+. -...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (290)
T PRK13634 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLN---GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE 101 (290)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh
Confidence 335678999999999999999999999999 443333332211 1111 000 0011
Q ss_pred HHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 69 MIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 69 ~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+.+..+ ...+.+...+.+.+.+..-+-...+.+ .+...++|+..+++++..+|+++| +|+|+
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~lll-lDEPt 173 (290)
T PRK13634 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLV-LDEPT 173 (290)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence 222211111 112232222333444433221111122 344569999999999989998877 99998
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.60 E-value=3.2e-07 Score=75.22 Aligned_cols=126 Identities=21% Similarity=0.372 Sum_probs=75.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHH----------HHHHHH-----------cCChhhHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDL----------LRAEIK-----------SGSENGTMI 70 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di----------~~~~~~-----------~~~~~~~~~ 70 (182)
+++..++..++|+|-+||||||+..+|.+-+ |-..+...++ ++..++ +....+..+
T Consensus 307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 4556788999999999999999999988655 3333333332 222222 111233333
Q ss_pred HHHHHcCC-CCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 71 QNMIKEGK-IVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
.+-+.-+. ........+.+.+.+...+.+.-..+ .|...+.|+..+++++..+|.+++ ||+|+..+-.=+
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~-LDEPTSALD~SV 461 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELIL-LDEPTSALDRSV 461 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEE-ecCCchHhhHHH
Confidence 33222222 33444444444444444332222233 455679999999999999998777 999997665433
No 342
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.4e-07 Score=74.78 Aligned_cols=117 Identities=19% Similarity=0.283 Sum_probs=63.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHc--CC----hhhHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKS--GS----ENGTMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~--~~----~~~~~~~~~ 73 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++. ...... +. .....+.+.
T Consensus 23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~ 99 (277)
T PRK13652 23 INFIAPRNSRIAVIGPNGAGKSTLFRHFN---GILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQD 99 (277)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHH
Confidence 35678899999999999999999999999 44333333221 111110 00 001111121
Q ss_pred HHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+..+ .....+...+.+.+.+...+.... ....++..+.++..+++++..+|+++| +|+|+
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli-lDEPt 165 (277)
T PRK13652 100 IAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV-LDEPT 165 (277)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 1110 112222222222333322111111 123455679999999999988998887 99998
No 343
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.1e-08 Score=80.57 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 356778999999999999999999999993
No 344
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.59 E-value=4.3e-08 Score=75.93 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999993
No 345
>PF05729 NACHT: NACHT domain
Probab=98.59 E-value=1.7e-07 Score=67.75 Aligned_cols=141 Identities=21% Similarity=0.297 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcE-----------ecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTH-----------LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~-----------~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (182)
++++|+|++|+||||+++.++..+.... +...+.-... . ...+.+.+..............+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~l~~~l~~~~~~~~~~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSN----N--SRSLADLLFDQLPESIAPIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcc----c--cchHHHHHHHhhccchhhhHHHHH
Confidence 4689999999999999999987763211 1111111100 0 012222222221111122222334
Q ss_pred HHHHhcCCCcEEEeCCCCCHH---------HHHHHHHHhCC--CCcEEEEEecCHHHH--HHHHHhhhccCCCCCcchHH
Q 030176 91 KAMEESGNDKFLIDGFPRNEE---------NRAAFEAVTKI--EPEFVLFFDCSEEEM--ERRILNRNQVRQKLPFSWGV 157 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~~~~---------q~~~l~~~~~~--~~~~vI~ld~~~~~l--~~R~~~R~~~r~~~~~~~~~ 157 (182)
..+.....-.+++||+..... ....+...+.. .+...+.+.+.+... ..+..+....-...+.+.++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 444445556788998632211 11223233322 344544455555444 44443332234556888999
Q ss_pred HHHHHHHhhhh
Q 030176 158 FCLFIMLSFSS 168 (182)
Q Consensus 158 ~~~~~~~~~~~ 168 (182)
-++|++..|..
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999888753
No 346
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.58 E-value=9.9e-08 Score=69.83 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=65.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------------cCChhhHHHHHH---------
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------------SGSENGTMIQNM--------- 73 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------------~~~~~~~~~~~~--------- 73 (182)
.+...++..++|+||+|||||||...|| |+...+.+++.-.... .....+..+|.+
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlA---GLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAl 106 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTAL 106 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHh---cCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhh
Confidence 4456788999999999999999999999 8777776655111000 001111111111
Q ss_pred -------HHcC--CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 74 -------IKEG--KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 74 -------~~~~--~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
...+ ..-+.+...+++..+.... -+.-|| ...+|+..+++++...|++++ -|+|+-
T Consensus 107 ENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-----Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf-ADEPTG 175 (228)
T COG4181 107 ENVALPLELRGESSADSRAGAKALLEAVGLGK-----RLTHYPAQLSGGEQQRVALARAFAGRPDVLF-ADEPTG 175 (228)
T ss_pred hhccchhhhcCCccccHHHHHHHHHHHhCccc-----ccccCccccCchHHHHHHHHHHhcCCCCEEe-ccCCCC
Confidence 1111 1111222333343332221 134444 459999999999999998766 999973
No 347
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.58 E-value=1.6e-07 Score=73.08 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=27.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3466789999999999999999999999993
No 348
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.58 E-value=9.8e-07 Score=69.11 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=27.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567789999999999999999999999944
No 349
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.58 E-value=1.2e-07 Score=73.58 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999999999999993
No 350
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.58 E-value=2.1e-07 Score=67.59 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=65.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh-----C----------CcEecHHHHHHHHHHcCChhhHHHHHHHHcC--
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-----G----------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-- 77 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l-----g----------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-- 77 (182)
.++.+.+..+++.||+|+|||||.+.|- .+ | +...-.+.-+++ ...+.|+.++++-.+.
T Consensus 22 ~l~~~~getlvllgpsgagkssllr~ln-lle~p~sg~l~ia~~~fd~s~~~~~k~i~~---lr~~vgmvfqqy~lwphl 97 (242)
T COG4161 22 TLDCPEGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAIRD---LRRNVGMVFQQYNLWPHL 97 (242)
T ss_pred eecCCCCCEEEEECCCCCchHHHHHHHH-HHhCCCCCeEEecccccccccCccHHHHHH---HHHhhhhhhhhhccCchh
Confidence 4566888999999999999999988763 22 1 111111111111 1223455555531111
Q ss_pred -------------CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 78 -------------KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 78 -------------~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
...+++.......+.+.+-.... ..|.|| ..++|+..+++++..+|++++ +|+|+.
T Consensus 98 tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiaralmmkpqvll-fdepta 170 (242)
T COG4161 98 TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTA 170 (242)
T ss_pred HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHHHHhcCCcEEe-ecCccc
Confidence 11223333333333443322122 256655 459999999999999998777 999874
No 351
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.58 E-value=5.1e-08 Score=74.50 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567789999999999999999999999943
No 352
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.58 E-value=8.3e-08 Score=79.99 Aligned_cols=118 Identities=18% Similarity=0.268 Sum_probs=75.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC---------hhhHHH------------H
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS---------ENGTMI------------Q 71 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~---------~~~~~~------------~ 71 (182)
+-++++.++.+-+|.|-+|+|||||.+.|. |+...+.|+++.+...... .+|+.. +
T Consensus 22 ~V~l~v~~GeIHaLLGENGAGKSTLm~iL~---G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E 98 (501)
T COG3845 22 DVSLSVKKGEIHALLGENGAGKSTLMKILF---GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE 98 (501)
T ss_pred ceeeeecCCcEEEEeccCCCCHHHHHHHHh---CcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence 346678999999999999999999999999 8888888776443222110 011111 1
Q ss_pred HHHHc-----CCCCCHHHHHHHHHHHHHhcC---CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKE-----GKIVPSEVTIKLLQKAMEESG---NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~-----~~~~~~~~~~~~l~~~l~~~~---~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+.. +..++...+.+.+.+...+.+ .-.-.+...+...+|+.++.+++..+++++| ||+|+
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI-LDEPT 168 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI-LDEPT 168 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE-EcCCc
Confidence 11111 112234444455555544421 1122355677889999999999988999888 99998
No 353
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=5.9e-08 Score=77.12 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=27.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 3567789999999999999999999999944
No 354
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.57 E-value=1.7e-07 Score=77.44 Aligned_cols=116 Identities=16% Similarity=0.260 Sum_probs=64.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH------------------HHHcC-------C--hh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA------------------EIKSG-------S--EN 66 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~------------------~~~~~-------~--~~ 66 (182)
-++++.++.+++|+|++|||||||++.|+ |+...+.|.++.+ ..... . ..
T Consensus 43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~---Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p 119 (382)
T TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSSLLRAVN---GLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMP 119 (382)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCC
Confidence 35678899999999999999999999999 4433333322111 11000 0 00
Q ss_pred hHHHHHHHHcC---CCCCHHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 67 GTMIQNMIKEG---KIVPSEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 67 ~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+..+.+..+ ...+.......+.+.+..-+...+ .+. ++..++|+..+++++..+|++++ +|+|+
T Consensus 120 ~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-~~~~~~~LSgGq~QRV~LARALa~~P~ILL-lDEPt 192 (382)
T TIGR03415 120 WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-ADKKPGELSGGMQQRVGLARAFAMDADILL-MDEPF 192 (382)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 01111111111 012222222233333333221111 232 44569999999999999999887 99998
No 355
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.57 E-value=3.2e-08 Score=75.83 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=61.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----------HHc---CC--hhhHHHHHHHHc--
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----------IKS---GS--ENGTMIQNMIKE-- 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~----------~~~---~~--~~~~~~~~~~~~-- 76 (182)
.++.+.++.+++|+|++|||||||++.|+ |....+.|.+..+. ... .. .......+.+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~---G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~ 95 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMIT---GILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHT 95 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHH
Confidence 35677899999999999999999999999 44333333221100 000 00 000011111100
Q ss_pred -CCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 -GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 -~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
....+.+.+.++++........+ .....++..+.++..+++++..+|++++ +|+|+
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~lll-lDEP~ 152 (223)
T TIGR03740 96 TLLGLPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLI-LDEPT 152 (223)
T ss_pred HHcCCCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEE-ECCCc
Confidence 00112222233332211110000 0122355668999999999988998777 99998
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.57 E-value=1e-07 Score=81.26 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 22 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 22 PSLTLNAGDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356778999999999999999999999993
No 357
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=1.1e-07 Score=75.64 Aligned_cols=117 Identities=23% Similarity=0.372 Sum_probs=65.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH----------------HHHHHc--CCh----hhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL----------------RAEIKS--GSE----NGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~----------------~~~~~~--~~~----~~~~~~ 71 (182)
-++++.++.+++|+|++|||||||++.|+ |+...+.|++. +..... +.. ......
T Consensus 25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~---Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 101 (283)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQNLN---GILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVY 101 (283)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHH
Confidence 35677899999999999999999999999 44333333211 111110 000 011122
Q ss_pred HHHHcC---CCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+..+ ...+.+...+.+.+.+...+-.. .....++..+.|+..+++++..+|+++| +|+|+
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi-lDEPt 169 (283)
T PRK13636 102 QDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV-LDEPT 169 (283)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 211111 11232222233344333321111 1133455669999999999988998887 99998
No 358
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=2.3e-08 Score=76.89 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=28.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34667889999999999999999999999943
No 359
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=3.6e-07 Score=72.20 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3456778999999999999999999999993
No 360
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.56 E-value=2.9e-08 Score=78.18 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3567789999999999999999999999943
No 361
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.56 E-value=2.4e-08 Score=86.68 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=66.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
++.++++..++|+|++|||||||++.|+..+ ..+.|.+ ++.......+ ...++.+-+.-
T Consensus 335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 411 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHF---DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIAL 411 (569)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhc
Confidence 4567899999999999999999999999443 3333322 1111111111 11222332322
Q ss_pred C-CCCCHHHHHHHHHHH-----HHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-KIVPSEVTIKLLQKA-----MEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-~~~~~~~~~~~l~~~-----l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ....++.+...++.. +.+ +.+-...++ .....++|+..+++++..+|+++| ||+|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill-lDEpt 479 (569)
T PRK10789 412 GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI-LDDAL 479 (569)
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EECcc
Confidence 2 223444444433321 111 122122222 144569999999999988999888 99988
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=98.56 E-value=4.2e-08 Score=93.27 Aligned_cols=119 Identities=15% Similarity=0.185 Sum_probs=68.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKI 79 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~ 79 (182)
++.++++..++|+|++|||||||++.|.+-+. -..++.-|+ ++..+...++. ..++++-+.-+..
T Consensus 1256 sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~ 1335 (1495)
T PLN03232 1256 SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE 1335 (1495)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCC
Confidence 45678899999999999999999999985442 112222111 22222211111 1122222222234
Q ss_pred CCHHHHHHHHHHH-----HHh-c-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 80 VPSEVTIKLLQKA-----MEE-S-GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 80 ~~~~~~~~~l~~~-----l~~-~-~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+++.+.+.++.. +.+ + +.+..+-++ +..+++|+.++++++-.+|.++| ||+++
T Consensus 1336 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILI-LDEAT 1399 (1495)
T PLN03232 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILV-LDEAT 1399 (1495)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence 5566666555532 222 1 122232222 45569999999999988898777 99986
No 363
>PLN03130 ABC transporter C family member; Provisional
Probab=98.55 E-value=4.8e-08 Score=93.26 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=69.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcCCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEGKI 79 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~~~ 79 (182)
+++++++..|+|+|++|||||||++.|.+-+. -..++.-|+ ++..+...++ ..-++++-+.-+..
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~ 1338 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE 1338 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCC
Confidence 55678999999999999999999999985442 112222111 2222221111 11122222222334
Q ss_pred CCHHHHHHHHHHH-----HHh-c-CCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 80 VPSEVTIKLLQKA-----MEE-S-GNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 80 ~~~~~~~~~l~~~-----l~~-~-~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..++.+.++++.. +.+ + +.+..|-++ +..+++|+.++++++-.+|.++| ||+++
T Consensus 1339 ~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILI-LDEAT 1402 (1622)
T PLN03130 1339 HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILV-LDEAT 1402 (1622)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence 4566666655532 222 1 222232232 45569999999999988898777 99986
No 364
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.55 E-value=3.7e-07 Score=74.86 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=63.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------------HHc--C-Ch--hhHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------------IKS--G-SE--NGTM 69 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------------~~~--~-~~--~~~~ 69 (182)
+-++.+.++.+++|+|++|||||||++.|+ |+...+.|.+..+. ... + .. ....
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA---GLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 345677889999999999999999999999 54433333321100 000 0 00 0111
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 70 IQNMIKEGK-IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+.+..+. ........+.+.+.+..-.-... ....+...++|+..+++++..+|++++ ||+|+
T Consensus 92 v~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll-LDEPt 159 (354)
T TIGR02142 92 VRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL-MDEPL 159 (354)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCC
Confidence 222111110 01111111122233322111111 112345569999999999999998777 99998
No 365
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.55 E-value=8e-08 Score=82.94 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=66.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~ 75 (182)
-+++++++..++|+|++|||||||++.|+..+ ..+.|++ +++......+ ...+..+-+.
T Consensus 337 ~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 413 (544)
T TIGR01842 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIA 413 (544)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHh
Confidence 35667899999999999999999999999544 2322222 1111111111 1112222222
Q ss_pred -cCCCCCHHHHHHHHHH-----HHHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 76 -EGKIVPSEVTIKLLQK-----AMEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 76 -~~~~~~~~~~~~~l~~-----~l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
.+....++.+.+.++. .+.. +.+ +..+-+ .....++|+..+++++..+|+++| +|+|+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili-lDEpts 483 (544)
T TIGR01842 414 RFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV-LDEPNS 483 (544)
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCcc
Confidence 1222344444333332 2222 111 222222 145569999999999988999888 999983
No 366
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=8.4e-08 Score=84.30 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=61.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH----cC-----ChhhHHHHHHHHc-CCCCCHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK----SG-----SENGTMIQNMIKE-GKIVPSE 83 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~----~~-----~~~~~~~~~~~~~-~~~~~~~ 83 (182)
++.+.++.+++|+||+|||||||++.|+ |....+.|.+.... .. .+ ........+.+.. .......
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 408 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLA---GELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQ 408 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHH
Confidence 4567889999999999999999999999 54333333332110 00 00 0000011111110 0001111
Q ss_pred HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..++............-+......++++..+++++..+|+++| ||+|+
T Consensus 409 ~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLl-LDEPt 458 (638)
T PRK10636 409 KLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLL-LDEPT 458 (638)
T ss_pred HHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 222222222111000001123455679999999999988998877 99997
No 367
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.54 E-value=4.3e-08 Score=75.15 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=66.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc---------CChhhHHHHH------------
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---------GSENGTMIQN------------ 72 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~---------~~~~~~~~~~------------ 72 (182)
-+++..++.+++|.||+|+||||+.+.++ |+...+.|.+..+.... .....+++|.
T Consensus 23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlit---G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN 99 (250)
T COG0411 23 VSLEVRPGEIVGLIGPNGAGKTTLFNLIT---GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLEN 99 (250)
T ss_pred eeEEEcCCeEEEEECCCCCCceeeeeeec---ccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence 35677899999999999999999999999 66656655543322210 0001111111
Q ss_pred H-------------HHcCCC-CCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 M-------------IKEGKI-VPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~-------------~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. +..... ...+...+...+.+..-+. ..-.....+...+.+.++++++..+|.+++ ||+|.
T Consensus 100 v~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLL-LDEPa 177 (250)
T COG0411 100 VAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL-LDEPA 177 (250)
T ss_pred HHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEE-ecCcc
Confidence 0 000000 0122333333333333111 111122356678888899999999998776 99997
No 368
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=2.4e-07 Score=74.94 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 45 vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567789999999999999999999999943
No 369
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=2.5e-07 Score=71.38 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999943
No 370
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=2e-07 Score=71.04 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=26.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.+ .+++|+|++|||||||++.|+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhC
Confidence 44667788 9999999999999999999993
No 371
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.53 E-value=5.9e-08 Score=76.12 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 21 VSLTLRPGEVVAILGPNGAGKSTLLRALSG 50 (258)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999994
No 372
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.53 E-value=3.7e-07 Score=70.73 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999999999999993
No 373
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=7.2e-07 Score=71.10 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=64.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------------------HHHH--cCCh----hhH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------------------AEIK--SGSE----NGT 68 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------------------~~~~--~~~~----~~~ 68 (182)
+-++++.++.+++|.|++|||||||.+.|+ |....+.|++.. .... .+.. ...
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 101 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFN---ALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN 101 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc
Confidence 335678999999999999999999999999 543333332211 0111 0000 001
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHHHHHhcCCC-cE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 69 MIQNMIKE---GKIVPSEVTIKLLQKAMEESGND-KF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 69 ~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+.+.. ......+...+.+.+.+..-... .. -...++..++|+..+++++..+|+++| +|+|+
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLl-LDEPt 173 (287)
T PRK13641 102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILC-LDEPA 173 (287)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence 11221111 01122222222233333331111 01 122345669999999999988998777 99998
No 374
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.53 E-value=3.8e-07 Score=71.20 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++++.++.+++|+|++|||||||++.|+..
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34667889999999999999999999999943
No 375
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.53 E-value=5e-08 Score=84.64 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=66.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEecH---HHH----HHHHHHcCChh----hHHHHHHHHcC-C
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLSA---GDL----LRAEIKSGSEN----GTMIQNMIKEG-K 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~~---~di----~~~~~~~~~~~----~~~~~~~~~~~-~ 78 (182)
++++.++..++|+|++|||||||++.|+..+.. ..++. .++ +++....-++. ..++.+-+.-+ .
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~ 439 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP 439 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC
Confidence 456789999999999999999999999965521 11221 111 11111111111 11122212212 1
Q ss_pred CCCHHHHHHHHHHH-----HHh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 IVPSEVTIKLLQKA-----MEE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~~~~~~~~~~l~~~-----l~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+++.+.+.++.. +.. +.+ +..+-++ ....+.|+..+++++..+|+++| +|+|+
T Consensus 440 ~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili-lDEpt 504 (576)
T TIGR02204 440 DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL-LDEAT 504 (576)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE-EeCcc
Confidence 23444444444432 222 112 2222222 34469999999999988898888 99987
No 376
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=3.5e-07 Score=72.40 Aligned_cols=118 Identities=22% Similarity=0.348 Sum_probs=65.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH---------------HHHHHHc---CCh---hhHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL---------------LRAEIKS---GSE---NGTMIQ 71 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di---------------~~~~~~~---~~~---~~~~~~ 71 (182)
+-++++.++.+++|.|++|||||||++.|+ |....+.|++ ++..... ... .+....
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 96 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLN---GLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE 96 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence 345678899999999999999999999999 4433333322 1111110 000 011222
Q ss_pred HHHHcC---CCCCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+..+ ...+.....+.+.+.+..-+... .....++..+.|+..+++++..+|++++ +|+|+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-LDEPt 164 (274)
T PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI-FDEVT 164 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 211111 11222222233333333211111 1123455679999999999988998777 99998
No 377
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=3.9e-07 Score=72.29 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 25 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456778999999999999999999999994
No 378
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.53 E-value=3.9e-07 Score=71.45 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++++.++.+++|.|++|||||||++.|+..
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34667889999999999999999999999943
No 379
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=2e-08 Score=78.49 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=26.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred eeeEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 356678999999999999999999999993
No 380
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=1.4e-07 Score=82.98 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=31.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
+-++.+.++.+++|+|++|||||||++.|+ |....+.|.+
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~---G~~~pd~G~I 58 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLK---NEISADGGSY 58 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceE
Confidence 446678899999999999999999999999 5444444444
No 381
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.53 E-value=4.8e-08 Score=92.47 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=29.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
+++++++..++|+|++||||||+++.|.+-|..
T Consensus 1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 567789999999999999999999999976653
No 382
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=2.5e-08 Score=77.05 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3356778999999999999999999999993
No 383
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.52 E-value=7.7e-08 Score=91.63 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=69.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKI 79 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~ 79 (182)
+++++++..++|+|++|||||||++.|.+-+. -..++.-|+ ++..+..-++. .-++++-+.-...
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence 55678999999999999999999999985442 122222111 22222211111 1122222221123
Q ss_pred CCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 80 VPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 80 ~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+++.+.+.++.. +.+ ++ .+..+-++ +..+++|+.++++++-.+|.++| ||+++
T Consensus 1386 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi-LDEaT 1449 (1522)
T TIGR00957 1386 YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV-LDEAT 1449 (1522)
T ss_pred CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence 5566666655542 111 12 23332231 45569999999999988898777 99986
No 384
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=7e-08 Score=70.02 Aligned_cols=91 Identities=20% Similarity=0.342 Sum_probs=58.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (182)
.++.+.++.+++|+|++||||||+++.|+ |....+.+++..... ...... . .. .
T Consensus 18 ~~~~i~~g~~~~i~G~nGsGKStll~~l~---g~~~~~~G~i~~~~~------------------~~~~~~-~---~~-~ 71 (157)
T cd00267 18 VSLTLKAGEIVALVGPNGSGKSTLLRAIA---GLLKPTSGEILIDGK------------------DIAKLP-L---EE-L 71 (157)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCccEEEECCE------------------EcccCC-H---HH-H
Confidence 35667889999999999999999999999 544333333311110 000000 0 00 0
Q ss_pred HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. ...++..+...+.++..+.+++...|++++ +|+|+
T Consensus 72 ~~---~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i-lDEp~ 108 (157)
T cd00267 72 RR---RIGYVPQLSGGQRQRVALARALLLNPDLLL-LDEPT 108 (157)
T ss_pred Hh---ceEEEeeCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 01 122233366778889999999888898777 99998
No 385
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.4e-07 Score=82.64 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=26.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++++.++.+++|+|++|||||||++.|+.
T Consensus 344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 344 SFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred EeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 56778999999999999999999999993
No 386
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=5.7e-07 Score=71.69 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=27.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567789999999999999999999999943
No 387
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.5e-07 Score=80.63 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=65.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------H----HHcCCh-----hhHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------E----IKSGSE-----NGTMIQN 72 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------~----~~~~~~-----~~~~~~~ 72 (182)
+-++++.++.+++|+|++|||||||++.|+ |+...+.|.+..+ . .....+ ......+
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 99 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLS---GIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLE 99 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHc---CCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHH
Confidence 336677899999999999999999999999 5443333332110 0 000000 0111222
Q ss_pred HHHcCC-------C---CCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 MIKEGK-------I---VPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~~~~~~-------~---~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..+. . .......+.+.+.+..-+-. ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll-LDEPt 173 (510)
T PRK09700 100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVII-MDEPT 173 (510)
T ss_pred HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 221110 0 01112222333333331111 11123455669999999999999998777 99998
No 388
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=2.3e-07 Score=73.53 Aligned_cols=118 Identities=22% Similarity=0.314 Sum_probs=63.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHH--cCCh----hhHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIK--SGSE----NGTMIQN 72 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~--~~~~----~~~~~~~ 72 (182)
+-++.+.++.+++|+|++|||||||++.|+ |......|++. +.... .+.. ....+.+
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~---Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (277)
T PRK13642 25 GVSFSITKGEWVSIIGQNGSGKSTTARLID---GLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED 101 (277)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHH
Confidence 345677899999999999999999999999 43333333221 11011 0000 0001111
Q ss_pred HHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 MIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.. ......+...+.+...+...+...+ -...++..++|+..+++++..+|+++| +|+|+
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll-lDEPt 168 (277)
T PRK13642 102 DVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII-LDEST 168 (277)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 1110 1112222222223333332111111 122345568999999999988998777 99997
No 389
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=68.37 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=29.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+-+++..++.+.+|+|.+|||||||.++|+.++
T Consensus 24 ~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred ccceeecCCcEEEEEecCCCcHHhHHHHHhccc
Confidence 446778999999999999999999999999666
No 390
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.51 E-value=8e-08 Score=74.30 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=27.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++++.++.+++|+|++|||||||++.|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33567789999999999999999999999943
No 391
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=2.5e-07 Score=72.12 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=27.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34567789999999999999999999999944
No 392
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=1.6e-07 Score=74.55 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=64.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------------HHHHc--CCh----hhHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------------AEIKS--GSE----NGTMIQ 71 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------------~~~~~--~~~----~~~~~~ 71 (182)
+-++++.++.+++|+|++|||||||.+.|+ |....+.|++.. ..... +.. ......
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 104 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMN---ALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVE 104 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHH
Confidence 345677899999999999999999999999 543333332211 10110 000 001111
Q ss_pred HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+..+ ...+.....+.+.+.+...+-... ....++..+.|+..+++++..+|+++| +|+|+
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll-lDEPt 172 (280)
T PRK13633 105 EDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII-FDEPT 172 (280)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 111111 011222222223333322111111 123455669999999999988998777 99998
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=3.4e-07 Score=76.80 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=72.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh--CCcE---ecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH----HHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTH---LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVT 85 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l--g~~~---~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 85 (182)
.+....++.++++|++|+|||||.++|+..- ++.. +..+++... ...........+++.....+.. +.+
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~--~~~l~~D~~~~dfl~~e~~l~~~~~l~ei 177 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEAL--QSVLESDTERLDFLAEEKELLAGLTLEEI 177 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHH--hhhhhccHHHHHHHHhhhhhhccchHHHH
Confidence 4556789999999999999999999999621 1111 111111111 1112222333333333322211 111
Q ss_pred HH-HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHH
Q 030176 86 IK-LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIML 164 (182)
Q Consensus 86 ~~-~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~ 164 (182)
.. +|..+...+....-=+..+...=+-+..+++++-.+||+++ ||+|++-| |.....+++.||.+
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL-LDEPTNhL-------------Dv~av~WLe~yL~t 243 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL-LDEPTNHL-------------DVVAVAWLENYLQT 243 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe-ecCCcccc-------------hhHHHHHHHHHHhh
Confidence 11 22221111000000022344444556689999988999888 99996544 44556777777765
Q ss_pred hhhh
Q 030176 165 SFSS 168 (182)
Q Consensus 165 ~~~~ 168 (182)
+=.+
T Consensus 244 ~~~T 247 (582)
T KOG0062|consen 244 WKIT 247 (582)
T ss_pred CCce
Confidence 5433
No 394
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.50 E-value=8.5e-08 Score=82.21 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=63.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-----------HHcC----Ch-----hhHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-----------IKSG----SE-----NGTMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-----------~~~~----~~-----~~~~~~~~ 73 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|++..+. .... .+ ......+.
T Consensus 30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 106 (510)
T PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIA---GIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKEN 106 (510)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHH
Confidence 35667899999999999999999999999 55434444332110 0000 00 01111121
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+..+.... ....+.+.+.+..-.-... -+..+...++|+..+++++..+|+++| ||+|+
T Consensus 107 l~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll-LDEPt 168 (510)
T PRK15439 107 ILFGLPKR-QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI-LDEPT 168 (510)
T ss_pred hhcccccc-hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence 11111001 1111223333332111111 122345569999999999988998777 99998
No 395
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.50 E-value=3.3e-07 Score=70.35 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=27.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 32 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33567889999999999999999999999944
No 396
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.50 E-value=1.6e-07 Score=72.76 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=62.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------HHHHHcCCh-----hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------RAEIKSGSE-----NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------~~~~~~~~~-----~~~~~~~~~~~ 76 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|.+. +.......+ .+....+.+..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~---G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~ 95 (237)
T TIGR00968 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIA---GLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAF 95 (237)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHh
Confidence 35678899999999999999999999999 43322222211 000000000 01111111111
Q ss_pred CC---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. ........+.+.+.+...+.... ....++..+.++..+.+++..+|++++ +|+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll-lDEP~ 158 (237)
T TIGR00968 96 GLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL-LDEPF 158 (237)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 10 11111122223333333111111 122355669999999999988998888 99998
No 397
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.6e-07 Score=79.22 Aligned_cols=121 Identities=20% Similarity=0.321 Sum_probs=71.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHH-------HHHHHHcCChhh-----HHHHHHHHcCC
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDL-------LRAEIKSGSENG-----TMIQNMIKEGK 78 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~---~~~~~~di-------~~~~~~~~~~~~-----~~~~~~~~~~~ 78 (182)
-+++++++..++|.|++||||||+.+.|.+-+.+ ..++.-|+ +|..+.-.++-+ ..+.+..-.+.
T Consensus 371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP 450 (591)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC
Confidence 3667899999999999999999999999987742 34444444 222222222221 11222111123
Q ss_pred CCCHHHHHHHHHHHHH-----h-cCC-CcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 79 IVPSEVTIKLLQKAME-----E-SGN-DKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 79 ~~~~~~~~~~l~~~l~-----~-~~~-~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
...++.+.+..+.... + +++ ...+=+ | ....++|+..+.+++-.+|.+++ +|+++.
T Consensus 451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~-~DEaTS 516 (591)
T KOG0057|consen 451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL-LDEATS 516 (591)
T ss_pred CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE-ecCccc
Confidence 3456666666554321 1 111 000000 1 23569999999999988888777 999863
No 398
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.6e-07 Score=82.40 Aligned_cols=33 Identities=15% Similarity=0.424 Sum_probs=28.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+-++++.++.+++|+|++|||||||++.|+..+
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 346677899999999999999999999999544
No 399
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.50 E-value=9.1e-08 Score=80.71 Aligned_cols=120 Identities=14% Similarity=0.234 Sum_probs=72.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChh---------------------hHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN---------------------GTMIQN 72 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~---------------------~~~~~~ 72 (182)
-+++..++.+.+++|-+|+|||||.|.|+ |....+.|+++.+........ -...++
T Consensus 27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLs---Gv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeN 103 (500)
T COG1129 27 VSLTVRPGEVHALLGENGAGKSTLMKILS---GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAEN 103 (500)
T ss_pred ceeEEeCceEEEEecCCCCCHHHHHHHHh---CcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHH
Confidence 35667899999999999999999999999 777677776644322111000 001111
Q ss_pred H-H----Hc-CCCCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 73 M-I----KE-GKIVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 73 ~-~----~~-~~~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
. + .. ...++.....+...+.+..-... ...+...+..++|..++++++..++.++| +|+|+..|
T Consensus 104 ifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI-lDEPTaaL 176 (500)
T COG1129 104 IFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI-LDEPTAAL 176 (500)
T ss_pred hhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCcccC
Confidence 1 1 11 11233444455555555442111 11122344559999999999988887666 99998433
No 400
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.49 E-value=6e-08 Score=82.94 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=64.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------HHHc----CCh-----hhHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------EIKS----GSE-----NGTMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------~~~~----~~~-----~~~~~~~~ 73 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|.+..+ .... ..+ ......+.
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 99 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLT---GIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAEN 99 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHH
Confidence 35677899999999999999999999999 5433333332111 0000 000 01112222
Q ss_pred HHcCC-------CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEGK-------IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+..+. ........+.+.+.+..-+-... -+..++..++|+..+++++..+|++++ ||+|+
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt 169 (501)
T PRK10762 100 IFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII-MDEPT 169 (501)
T ss_pred hhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 21110 01112122223333333211111 123355669999999999999998777 99998
No 401
>PRK13409 putative ATPase RIL; Provisional
Probab=98.49 E-value=3.4e-07 Score=79.72 Aligned_cols=36 Identities=31% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
.+.++.+++|.|++||||||+++.|+ |....+.|++
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~---G~l~p~~G~i 130 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILS---GELIPNLGDY 130 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHh---CCccCCCccc
Confidence 56788999999999999999999999 6655555665
No 402
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.49 E-value=2.1e-07 Score=68.74 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=62.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHH--------------HHHHHHcCChhhHHHHHHHHc
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDL--------------LRAEIKSGSENGTMIQNMIKE 76 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l-----g~~~~~~~di--------------~~~~~~~~~~~~~~~~~~~~~ 76 (182)
+....+.+|.|.|.+||||||+.+++- -+ |-..+...++ .+.........++.++.+-.+
T Consensus 27 L~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLW 105 (256)
T COG4598 27 LQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLW 105 (256)
T ss_pred eecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchh
Confidence 345678899999999999999998873 22 1111111111 011111122334444443111
Q ss_pred C---------------CCCCHHHHHHHHHHHHHhcCCCcEEEeCCC----CCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 77 G---------------KIVPSEVTIKLLQKAMEESGNDKFLIDGFP----RNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 77 ~---------------~~~~~~~~~~~l~~~l~~~~~~~~ildg~~----~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
. ...+.....+.....+.+.+-..- -+.|| ..++|+..+++++..+|++.+ +|+|+.
T Consensus 106 sHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek-~~~YP~~LSGGQQQR~aIARaLameP~vmL-FDEPTS 181 (256)
T COG4598 106 SHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK-ADAYPAHLSGGQQQRVAIARALAMEPEVML-FDEPTS 181 (256)
T ss_pred HHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-hhcCccccCchHHHHHHHHHHHhcCCceEe-ecCCcc
Confidence 1 012233334444444433110000 12233 459999999999999997655 999984
No 403
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=2e-07 Score=72.94 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred eeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 356678999999999999999999999994
No 404
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.49 E-value=1.1e-07 Score=80.93 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=63.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------HcCChhhHHHHHHHHcC---CCCCHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------KSGSENGTMIQNMIKEG---KIVPSEVT 85 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~ 85 (182)
++.+.++.+++|+|++|||||||++.|+ |....+.|.+..+.. ...........+.+... .....+..
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLa---GLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~ 120 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIA---GVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKI 120 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHh---CCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHH
Confidence 5567899999999999999999999999 554444443321110 00000001111111110 11222222
Q ss_pred HHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 86 IKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 86 ~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+.+.+...+.... -+..+...+.|+..+++++..+|+++| ||+|+
T Consensus 121 ~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL-LDEPT 171 (549)
T PRK13545 121 KEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV-IDEAL 171 (549)
T ss_pred HHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence 2222223222111001 123455679999999999988998877 99998
No 405
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=2.6e-07 Score=71.47 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=62.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------H---Hc---C-Chh-hHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------I---KS---G-SEN-GTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~---~~---~-~~~-~~~~~~~~~~ 76 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|++..+. . .. . ... .....+.+..
T Consensus 18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~---G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 94 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIA---GFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAY 94 (235)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh---CCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHH
Confidence 35677899999999999999999999999 54444444321110 0 00 0 000 0011111110
Q ss_pred ---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 ---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..........+.+.+.+....-... -...++..++++..+++++...|++++ +|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll-lDEPt 157 (235)
T cd03299 95 GLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL-LDEPF 157 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE-ECCCc
Confidence 0001111111122222222111111 122355669999999999988998777 99998
No 406
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.49 E-value=2.6e-07 Score=71.00 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=27.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 3667889999999999999999999999943
No 407
>PRK13409 putative ATPase RIL; Provisional
Probab=98.49 E-value=8.2e-08 Score=83.56 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcC-CCCC-HHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEG-KIVP-SEVTIK 87 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~-~~~~-~~~~~~ 87 (182)
+.+.++.+++|+|++|||||||++.|+ |....+.|.+..+. .. .......+..+.+... .... .....+
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~---Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 436 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLA---GVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSE 436 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHH
Confidence 345788999999999999999999999 54433444332110 00 0001111222222111 0111 111122
Q ss_pred HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
++......... ..-+......++|+..+++++..+|+++| ||+|+
T Consensus 437 ~L~~l~l~~~~-~~~~~~LSGGe~QRvaiAraL~~~p~llL-LDEPt 481 (590)
T PRK13409 437 IIKPLQLERLL-DKNVKDLSGGELQRVAIAACLSRDADLYL-LDEPS 481 (590)
T ss_pred HHHHCCCHHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 22221111000 01133455679999999999999998887 99998
No 408
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.5e-07 Score=81.04 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=63.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------cC----ChhhHHHHHHHHc--CCCCCH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------SG----SENGTMIQNMIKE--GKIVPS 82 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------~~----~~~~~~~~~~~~~--~~~~~~ 82 (182)
++.+.++.+++|+|++|||||||++.|+ |+...+.|.+...... .. ........+.+.. ......
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~ 415 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLV---GELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDE 415 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccH
Confidence 4567889999999999999999999999 5543334433211100 00 0000111111111 011112
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 83 ~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+.+++............-+......++|+..+++++..+|+++| ||+|+
T Consensus 416 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll-LDEPt 466 (530)
T PRK15064 416 QAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV-MDEPT 466 (530)
T ss_pred HHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 2222333222110000011133455679999999999988998777 99997
No 409
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=1.2e-07 Score=73.44 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=26.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
-++.+.++.+++|+|++|||||||++.|+
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 35677899999999999999999999999
No 410
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.48 E-value=3.6e-07 Score=72.26 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456778999999999999999999999993
No 411
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.6e-07 Score=80.04 Aligned_cols=117 Identities=13% Similarity=0.194 Sum_probs=65.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-----------HHHc----CCh-----hhHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----------EIKS----GSE-----NGTMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~-----------~~~~----~~~-----~~~~~~~~ 73 (182)
-++.+.++.+++|+|++|||||||++.|+ |....+.|.+..+ .... ..+ ......+.
T Consensus 17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 93 (491)
T PRK10982 17 VNLKVRPHSIHALMGENGAGKSTLLKCLF---GIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDN 93 (491)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHc---CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHH
Confidence 45677899999999999999999999999 5433333332110 0010 000 01111121
Q ss_pred HHcCC------CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEGK------IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~~------~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+..+. ........+.+.+.+..-.-... -+..++..++|+..+++++..+|+++| +|+|+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll-LDEPt 162 (491)
T PRK10982 94 MWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI-MDEPT 162 (491)
T ss_pred hhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCC
Confidence 11110 01222222333344433211111 123355669999999999988998777 99998
No 412
>PHA03136 thymidine kinase; Provisional
Probab=98.48 E-value=1.7e-05 Score=64.83 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCcEEEEEecCHHHHHHHHHhhhccCCCCCcc-------hHHHHHHHHHhhhhh
Q 030176 123 EPEFVLFFDCSEEEMERRILNRNQVRQKLPFS-------WGVFCLFIMLSFSSC 169 (182)
Q Consensus 123 ~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~-------~~~~~~~~~~~~~~~ 169 (182)
.||.+||++.+.+++.+|+.+| +|+-+..+ .+.|+.|+.++.+.+
T Consensus 191 ~pD~IIyL~l~~e~~~~RI~kR--gR~~E~I~~~YL~~L~~~Y~~~~nt~~yl~ 242 (378)
T PHA03136 191 HGGNIVIMDLDECEHAERIIAR--GRPGEAIDVRFLCALHNIYICFMNTITYAK 242 (378)
T ss_pred CCCEEEEEeCCHHHHHHHHHHc--CCCccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999 66655443 334555555555554
No 413
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.48 E-value=6.8e-07 Score=70.09 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
.+.++.+++|+|++|||||||++.|+ |+...+.|.+
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~---Gl~~p~~G~I 57 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILA---GKLKPNLGKF 57 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHh---CCcCCCCceE
Confidence 36789999999999999999999999 6655555554
No 414
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.48 E-value=8.7e-08 Score=68.73 Aligned_cols=126 Identities=19% Similarity=0.282 Sum_probs=67.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH------cCChhhHHHHHHHHcCC---------C
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------SGSENGTMIQNMIKEGK---------I 79 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------~~~~~~~~~~~~~~~~~---------~ 79 (182)
.+++.++.++.|+||+|||||||...+...+.-.+-..+.++-.... .+.+.|..+++.+.... .
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fA 101 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFA 101 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEe
Confidence 45678899999999999999999998886664222222222111111 12234444444321110 0
Q ss_pred CC----HHHHHHHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176 80 VP----SEVTIKLLQKAMEESGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 80 ~~----~~~~~~~l~~~l~~~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~ 142 (182)
++ .+...+.....+.+....+. -+. ....++.+..+.+++-..|..++ ||+|+..+-.-++
T Consensus 102 lp~~~KG~aRr~~a~aAL~~~gL~g~-f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL-LDEPFS~LD~ALR 170 (213)
T COG4136 102 LPATLKGNARRNAANAALERSGLDGA-FHQDPATLSGGQRARVALLRALLAQPKALL-LDEPFSRLDVALR 170 (213)
T ss_pred cCcccccHHHHhhHHHHHHHhccchh-hhcChhhcCcchHHHHHHHHHHHhCcceee-eCCchhHHHHHHH
Confidence 11 11111222222222111111 111 23447777788888766786666 9999988776654
No 415
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=7.3e-08 Score=87.94 Aligned_cols=119 Identities=22% Similarity=0.313 Sum_probs=70.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCC-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGK- 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~- 78 (182)
++.++++..++|+|++||||||+.+.|.+-|. -..+|..|+ ++..+....+. ...+.+-+..|.
T Consensus 373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~ 452 (1228)
T KOG0055|consen 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP 452 (1228)
T ss_pred EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC
Confidence 56789999999999999999999999986663 333443332 22222222221 222223233333
Q ss_pred CCCHHHHHHHHHHHH-----Hh--cCCCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 IVPSEVTIKLLQKAM-----EE--SGNDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~~~~~~~~~~l~~~l-----~~--~~~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
....+.+.++.+... .. .+.+..+-++ ....++|+.++++++..+|.+++ ||+++
T Consensus 453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILL-LDEaT 517 (1228)
T KOG0055|consen 453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILL-LDEAT 517 (1228)
T ss_pred cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEE-ecCcc
Confidence 223444444432211 11 1122233332 34569999999999998998777 99987
No 416
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.48 E-value=9e-08 Score=72.30 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=60.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHHHcCC-hhhHHHHH---HHHcC-CCCCHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGS-ENGTMIQN---MIKEG-KIVPSEVT 85 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~ 85 (182)
+-++++.++.+++|+|++|||||||++.|+ |.. ..+.|.+..+...... ......+. +.... ...+.-..
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~---G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIM---GHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN 94 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHh---CCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccH
Confidence 345677899999999999999999999999 542 2333333221110000 00000000 00000 00111111
Q ss_pred HHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 86 ~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+.. ....++..+.|+..+++++..+|++++ +|+|+
T Consensus 95 ----~~~l~~------~~~~LS~G~~qrv~laral~~~p~ill-lDEPt 132 (200)
T cd03217 95 ----ADFLRY------VNEGFSGGEKKRNEILQLLLLEPDLAI-LDEPD 132 (200)
T ss_pred ----HHHHhh------ccccCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 111111 123456679999999999988998777 99998
No 417
>PTZ00243 ABC transporter; Provisional
Probab=98.48 E-value=1.2e-07 Score=90.44 Aligned_cols=120 Identities=13% Similarity=0.188 Sum_probs=67.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKI 79 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~ 79 (182)
+++++++..|+|+|++|||||||++.|.+-+. -..++.-|+ ++..+...++. .-++++-+.-...
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~ 1409 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE 1409 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC
Confidence 35678899999999999999999999984442 112222111 22222211111 1223232222233
Q ss_pred CCHHHHHHHHHHH-----HHh-cC-CCcEEEe---CCCCCHHHHHHHHHHhCCC-CcEEEEEecCHH
Q 030176 80 VPSEVTIKLLQKA-----MEE-SG-NDKFLID---GFPRNEENRAAFEAVTKIE-PEFVLFFDCSEE 135 (182)
Q Consensus 80 ~~~~~~~~~l~~~-----l~~-~~-~~~~ild---g~~~~~~q~~~l~~~~~~~-~~~vI~ld~~~~ 135 (182)
..++.+.++++.. +.+ +. .+..+-+ .+...++|+.++++++-.+ +.++| ||+++.
T Consensus 1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl-LDEATS 1475 (1560)
T PTZ00243 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL-MDEATA 1475 (1560)
T ss_pred CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE-EeCCCc
Confidence 4566666665542 111 11 1222222 1455699999999998764 66666 999863
No 418
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.7e-06 Score=67.57 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=27.7
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3567889999999999999999999999954
No 419
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.48 E-value=1.4e-07 Score=71.80 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=32.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL 56 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~ 56 (182)
++..+++.++.+.|++|+||||+.+.++ |......|.+.
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~---Gl~~~~~G~I~ 61 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIM---GLVRPRSGRII 61 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeeEE
Confidence 5667899999999999999999999999 76665555553
No 420
>PLN03073 ABC transporter F family; Provisional
Probab=98.48 E-value=9.5e-08 Score=84.82 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=62.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----------cCChhhHH-HHHHHHcCCCCCHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----------SGSENGTM-IQNMIKEGKIVPSE 83 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~ 83 (182)
++.+.++.+++|+|++|||||||++.|+ |....+.|.+...... ........ .............+
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~---Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 605 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLIS---GELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ 605 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHH
Confidence 4567888999999999999999999999 5443334433211000 00000000 00000000112233
Q ss_pred HHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 84 ~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..++............-+......++|+..+++++..+|+++| ||+|+
T Consensus 606 ~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL-LDEPT 655 (718)
T PLN03073 606 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL-LDEPS 655 (718)
T ss_pred HHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 333333322111000000123355669999999999988998887 99998
No 421
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.47 E-value=3.3e-07 Score=70.88 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++++.++.+++|+|++|||||||++.|+..
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 34667889999999999999999999999943
No 422
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=7e-08 Score=82.63 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=64.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHH---------------HHHHcCCh-----hhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLR---------------AEIKSGSE-----NGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~--~~~di~~---------------~~~~~~~~-----~~~~~~ 71 (182)
-++++.++.+++|+|++|||||||++.|+ |+... +.|.+.. .......+ ......
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 100 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLS---GVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVL 100 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHH
Confidence 35677899999999999999999999999 54322 2333211 00110000 011122
Q ss_pred HHHHcCC------CCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEGK------IVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~~------~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+..+. ..+.+...+.+.+.+..-+.. ..-+..+...++|+..+++++..+|+++| ||+|+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll-LDEPt 171 (506)
T PRK13549 101 ENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLI-LDEPT 171 (506)
T ss_pred HHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE-EeCCC
Confidence 2221111 112222223333444332111 11123455669999999999999998777 99998
No 423
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.47 E-value=1.6e-07 Score=81.84 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=65.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|+..+ ..+.|++ +++......+ ...++.+-+..
T Consensus 355 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 431 (585)
T TIGR01192 355 SFEAKAGQTVAIVGPTGAGKTTLINLLQRVY---DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL 431 (585)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHccCC---CCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhc
Confidence 4567899999999999999999999999443 2322222 1111111110 11222232222
Q ss_pred C-CCCCHHHHHHHHHH-----HHHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G-KIVPSEVTIKLLQK-----AMEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~-~~~~~~~~~~~l~~-----~l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ....++...+.++. .+.. +.+ +..+-+ .....++|+..+++++..+|+++| +|+|+
T Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili-lDEpt 499 (585)
T TIGR01192 432 GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV-LDEAT 499 (585)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence 2 22344444443332 1211 111 112112 134569999999999988998888 99998
No 424
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.47 E-value=1.7e-07 Score=80.26 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=65.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------HHHHcCChhhHHHHHHHHcCC-CCCHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------AEIKSGSENGTMIQNMIKEGK-IVPSEV 84 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 84 (182)
++.+.++..|+|+||+|+|||||.+.|+...+-. .|.+.. +............-+++.... ...+..
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~ 418 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQE 418 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHH
Confidence 4556889999999999999999999997554311 111100 000000001112222222222 222445
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 85 ~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+...+...+........-+......++-+..++..+...|+++| ||+|+
T Consensus 419 ~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi-LDEPT 467 (530)
T COG0488 419 VRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL-LDEPT 467 (530)
T ss_pred HHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE-EcCCC
Confidence 55555554433211111234455678888889888888898888 99996
No 425
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.46 E-value=1.6e-07 Score=71.70 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999943
No 426
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=9.3e-07 Score=70.03 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3356788999999999999999999999993
No 427
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.46 E-value=4.9e-07 Score=70.83 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 356778999999999999999999999994
No 428
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=2.5e-07 Score=71.43 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||.+.|+..
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3556788999999999999999999999944
No 429
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.46 E-value=1e-07 Score=74.63 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=27.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3567789999999999999999999999943
No 430
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=3.9e-07 Score=71.47 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=26.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+|++|||||||++.|+.
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG 58 (257)
T PRK14246 30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNR 58 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678899999999999999999999993
No 431
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.45 E-value=3.1e-06 Score=66.10 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=27.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++.+.++.+++|+|++|||||||++.|+..
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 556789999999999999999999999954
No 432
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.1e-07 Score=79.67 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=64.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-----------HHHH----cCCh-----hhHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-----------AEIK----SGSE-----NGTMIQNM 73 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-----------~~~~----~~~~-----~~~~~~~~ 73 (182)
-++++.++.+++|+|++|||||||++.|+ |....+.|.+.. .... ...+ ......+.
T Consensus 23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 99 (501)
T PRK11288 23 ISFDCRAGQVHALMGENGAGKSTLLKILS---GNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAEN 99 (501)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHH
Confidence 35677899999999999999999999999 543333333211 0000 0000 01111121
Q ss_pred HHcCC------CCCHHHHHHHHHHHHHhcCCC---cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IKEGK------IVPSEVTIKLLQKAMEESGND---KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~~~~------~~~~~~~~~~l~~~l~~~~~~---~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+..+. ..+.....+.+.+.+..-+-. ...+..+...++|+..+++++..+|+++| ||+|+
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll-LDEPt 168 (501)
T PRK11288 100 LYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA-FDEPT 168 (501)
T ss_pred HHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE-EcCCC
Confidence 11110 012222222333333331111 11123455679999999999988998777 99998
No 433
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.45 E-value=4.8e-07 Score=70.65 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
....+.+|+|+|++|+||||+|+.|...+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 45677899999999999999999988766
No 434
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=4.6e-08 Score=84.16 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=27.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 19 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3466788999999999999999999999994
No 435
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=5.1e-07 Score=70.51 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999943
No 436
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=2.9e-06 Score=66.92 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=27.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++++.++.+++|+|++|||||||++.|+..+
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35667899999999999999999999999543
No 437
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.43 E-value=1.8e-07 Score=73.16 Aligned_cols=31 Identities=32% Similarity=0.665 Sum_probs=27.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|+|++|||||||++.|+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3356788999999999999999999999993
No 438
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=2.3e-06 Score=67.21 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999944
No 439
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.43 E-value=1.6e-05 Score=61.04 Aligned_cols=125 Identities=19% Similarity=0.284 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH--
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK-- 91 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 91 (182)
....+|+++|.||.|||++|+.|.+-| |+ ..++.|++-+........... +...-..+....++.+...+.+
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~f-f~p~n~~~~~~R~~~a~~~l~dl~ 88 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEF-FDPDNEEAKKLREQIAKEALEDLI 88 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGG-GSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccccccc-CCCCChHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999998755 44 468889888877664211100 0000000000111222233333
Q ss_pred -HHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe--cCHHHHHHHHHhh
Q 030176 92 -AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD--CSEEEMERRILNR 144 (182)
Q Consensus 92 -~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld--~~~~~l~~R~~~R 144 (182)
-+...++.+.|.|+.....+.+..+.+.......-++|+. |+.+.++++-..+
T Consensus 89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~ 144 (222)
T PF01591_consen 89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIRE 144 (222)
T ss_dssp HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHH
T ss_pred HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHH
Confidence 2333567899999988888888887776533333455564 4555555544443
No 440
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.43 E-value=2.2e-07 Score=72.87 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=26.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++.+.++.+++|+|++|||||||++.|+..
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 566789999999999999999999999943
No 441
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=5.5e-07 Score=70.23 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3567789999999999999999999999943
No 442
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.43 E-value=2.2e-07 Score=79.52 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=26.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+|++|||||||++.|+.
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence 45678899999999999999999999994
No 443
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.43 E-value=1.5e-07 Score=73.88 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=28.2
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+-++.+.++.+++|+|++|||||||++.|+..+
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 345677899999999999999999999999443
No 444
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.42 E-value=4.2e-07 Score=80.25 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=65.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---HH--cCC---hhhHHHHHHHHcCC--------
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---IK--SGS---ENGTMIQNMIKEGK-------- 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---~~--~~~---~~~~~~~~~~~~~~-------- 78 (182)
++++.++.+++|+|++|||||||++.|+ |+...+.|.+.... .. .+. ..+ ...+.+..+.
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~---Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~ 547 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILG---ELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRR 547 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhcc
Confidence 4567889999999999999999999999 54333444432211 00 000 011 2222222211
Q ss_pred CCCHHHHHHHHHHH-----HHhcCCCcEEE---eCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 79 IVPSEVTIKLLQKA-----MEESGNDKFLI---DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 79 ~~~~~~~~~~l~~~-----l~~~~~~~~il---dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
...++.+.++++.. +....+-.... +.....++|+..+++++..+|+++| ||+|+.
T Consensus 548 ~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill-LDEpts 611 (659)
T TIGR00954 548 GLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI-LDECTS 611 (659)
T ss_pred CCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE-EeCCcc
Confidence 12233333333322 11111101111 2355669999999999988998777 999983
No 445
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2.8e-06 Score=66.26 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=27.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999954
No 446
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.42 E-value=4.6e-07 Score=77.68 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=26.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+|++|||||||++.|+.
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 55678999999999999999999999993
No 447
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.6e-06 Score=64.80 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCChh-----------------hHHHHHHHHcCCCCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSEN-----------------GTMIQNMIKEGKIVP 81 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg-~~~~~~~di~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 81 (182)
+-.+|+|.|-..|||||||+.|.+.|+ ...+..||.+.......... ...+.-++......+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 346889999999999999999999885 56777777765444321110 111111222222222
Q ss_pred H--HHHHHH--HHHHHH-----hcCCCcEEEeCCC--CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 82 S--EVTIKL--LQKAME-----ESGNDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 82 ~--~~~~~~--l~~~l~-----~~~~~~~ildg~~--~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
+ +..+.. +..... ......+++|||- .-..+.. ..|..|.+..|.+++.+|...|..
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~--------~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD--------LFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh--------hhhhheeeeccHHHHHHhhccccc
Confidence 1 111100 111111 1235678899962 2222222 136777799999999999998864
No 448
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=4.6e-06 Score=65.01 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 356778999999999999999999999984
No 449
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.41 E-value=9.1e-08 Score=76.11 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=60.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH---cCCh-hhHHHHHHHHcCCCCCHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK---SGSE-NGTMIQNMIKEGKIVPSEVTIKLL 89 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 89 (182)
++.+.++.+++|+|++|||||||++.|+ |....+.|.+.... .. .... ......+.+..+.........+.+
T Consensus 57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~---Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l 133 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLMLIL---GELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVV 133 (282)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHH
Confidence 5567899999999999999999999999 54333333321100 00 0000 000111111111111111111111
Q ss_pred H-----HHHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 90 Q-----KAMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 90 ~-----~~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. ..+.. .......++ ..+..+.|+..+++++..+|+++| +|+|+
T Consensus 134 ~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLi-LDEPt 187 (282)
T cd03291 134 KACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYL-LDSPF 187 (282)
T ss_pred HHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 1 11111 011111122 345568999999999988998888 99998
No 450
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=9.9e-07 Score=64.61 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=66.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------------------------------
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK------------------------------- 61 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~------------------------------- 61 (182)
+-++....+..+++.||+|+||||+.+.|...|. ++.|.++-+..+
T Consensus 29 ~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRvi 105 (235)
T COG4778 29 NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVI 105 (235)
T ss_pred ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhc
Confidence 3455677889999999999999999999986653 333332111110
Q ss_pred -cCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCCcEEEe--CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHH
Q 030176 62 -SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136 (182)
Q Consensus 62 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ild--g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~ 136 (182)
.........+..+..| .+.+........++.+- ...-|-+- .|....+|+..+.+.+..+.-+++ ||+|+..
T Consensus 106 PRV~aLdVvaePll~~g--v~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILL-LDEPTas 182 (235)
T COG4778 106 PRVSALDVVAEPLLARG--VPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL-LDEPTAS 182 (235)
T ss_pred cCcchHHHHHhHHHHcC--CCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEE-ecCCccc
Confidence 0011112222233333 23333333334444331 11222222 466779999999999877665555 9999843
No 451
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.40 E-value=3.4e-07 Score=80.51 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=30.9
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d 54 (182)
+-++.+.++.+++|+|++|||||||+++|+ |....+.|.
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriia---G~~~p~~G~ 59 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILN---GEVLLDDGR 59 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHc---CCCCCCCeE
Confidence 345677899999999999999999999999 544344443
No 452
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=1.7e-06 Score=67.68 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.5
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999943
No 453
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.40 E-value=6.1e-07 Score=76.93 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=32.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
+.++.+.++..|+|+|.+|||||||.+.|+ |....+.|++
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLLkila---G~~~~~~G~i 60 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILA---GELEPDSGEV 60 (530)
T ss_pred CCcceeCCCCEEEEECCCCCCHHHHHHHHc---CCCcCCCCeE
Confidence 456677889999999999999999999999 5444444444
No 454
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.40 E-value=3.8e-07 Score=78.36 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4567789999999999999999999999954
No 455
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=3.6e-06 Score=65.56 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=27.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++.+.++.+++|+|++|||||||++.|+.
T Consensus 21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3466778999999999999999999999994
No 456
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.39 E-value=3e-07 Score=72.80 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG 49 (272)
T PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLLKALAG 49 (272)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999994
No 457
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.39 E-value=1.5e-07 Score=82.64 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=62.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH----cC----ChhhHHHHHHHHcCC---CCC-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK----SG----SENGTMIQNMIKEGK---IVP- 81 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~----~~----~~~~~~~~~~~~~~~---~~~- 81 (182)
++.+.++.+++|+|++|||||||++.|+ |....+.|.+.... .. .+ ........+.+.... ...
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~ 415 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLML---GQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNG 415 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccc
Confidence 5567899999999999999999999999 54333444332210 00 00 000011111111110 001
Q ss_pred -HHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 82 -SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 82 -~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+..++............-+......++++..+++++...|+++| ||+|+
T Consensus 416 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl-LDEPt 468 (635)
T PRK11147 416 RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI-LDEPT 468 (635)
T ss_pred hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 11122222221110000001123456679999999999988898777 99998
No 458
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.38 E-value=3.8e-07 Score=78.53 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=27.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++.+.++.+++|+|++|||||||++.|+..
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 33567789999999999999999999999943
No 459
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=3.3e-07 Score=74.44 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.4
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+-++++.++.+++|.|++|||||||++.|+..+
T Consensus 25 ~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 335678999999999999999999999999543
No 460
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=1.9e-06 Score=67.57 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+.++.+++|+|++|||||||++.|+..+
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567899999999999999999999999543
No 461
>PLN03232 ABC transporter C family member; Provisional
Probab=98.38 E-value=3.5e-07 Score=87.08 Aligned_cols=116 Identities=15% Similarity=0.245 Sum_probs=67.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--HHHHHcCCh----hhHHHHHHHHcCCCCCHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--RAEIKSGSE----NGTMIQNMIKEGKIVPSEVTIKL 88 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
++.++++.+++|+|++|||||||++.|...+ ....|.+. +.......+ ...++++-+..+...+++...+.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~---~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~v 713 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGEL---SHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRA 713 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---cccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHH
Confidence 4567899999999999999999999999544 22222211 111110000 11223333333444455544444
Q ss_pred HHHH-----HHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 89 LQKA-----MEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 89 l~~~-----l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
++.. +.. +++....+.. ....++|+..++|++-.+|++++ ||+|+
T Consensus 714 l~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL-LDEpt 768 (1495)
T PLN03232 714 IDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI-FDDPL 768 (1495)
T ss_pred HHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE-EcCCc
Confidence 4322 111 2232222321 44569999999999988999888 99987
No 462
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=1.1e-06 Score=68.47 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=27.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567788999999999999999999999943
No 463
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.37 E-value=2.3e-07 Score=80.25 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=62.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---HH--cC----ChhhHHHHHHHHcCC---CCC-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---IK--SG----SENGTMIQNMIKEGK---IVP- 81 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---~~--~~----~~~~~~~~~~~~~~~---~~~- 81 (182)
++.+.++.+++|.|++|||||||++.|+ |....+.|.+.... .. .+ ........+.+.... ...
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 418 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGK 418 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHc---CCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCc
Confidence 4567889999999999999999999999 54433444332210 00 00 000111222221111 011
Q ss_pred -HHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 82 -SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 82 -~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+++............-+..+...++++..+++++..+|+++| ||+|+
T Consensus 419 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll-LDEPt 471 (552)
T TIGR03719 419 REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL-LDEPT 471 (552)
T ss_pred chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE-EeCCC
Confidence 11111222221110000011123455679999999999999998888 99997
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.2e-06 Score=71.19 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH----------HcCChhhHHHHHHHHcCCCCCHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----------KSGSENGTMIQNMIKEGKIVPSEVTIKL 88 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
-....|+|+||+|+||||+++.|..++ -...+++-.+.. ........+..+++.....+|.+.....
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl---~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~ 687 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKL---DPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQ 687 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCC---CCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHH
Confidence 445689999999999999999998443 344444321110 0000111222335555666666655555
Q ss_pred HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
|-......-...+-+-.....+..+..++......||++| ||+|+.
T Consensus 688 LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlI-LDEPTN 733 (807)
T KOG0066|consen 688 LGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLI-LDEPTN 733 (807)
T ss_pred hhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEE-ecCCCC
Confidence 4433333222334344556778888888887777899888 999874
No 465
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.36 E-value=8.6e-07 Score=69.27 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~ 52 (182)
+-++++|++.++++.|++|+||||..|.|. |....+.
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLT---Gll~p~~ 78 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLT---GLLLPTS 78 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHHh---CccccCC
Confidence 446788999999999999999999999999 5444433
No 466
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.36 E-value=6.8e-06 Score=59.52 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
++.+|+++||+|+||-||.......+.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~ 30 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLA 30 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhc
Confidence 688999999999999999888777663
No 467
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=1e-05 Score=64.10 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 40 vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 356778999999999999999999999994
No 468
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.36 E-value=4.9e-07 Score=77.30 Aligned_cols=117 Identities=13% Similarity=0.127 Sum_probs=64.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHH-----------H----HHcCCh-----hhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRA-----------E----IKSGSE-----NGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~--~~~di~~~-----------~----~~~~~~-----~~~~~~ 71 (182)
-++.+.++.+++|+|++|||||||++.|+ |.... +.|.+..+ . .....+ ......
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~---G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 96 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILS---GVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVA 96 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHh---CCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHH
Confidence 35677899999999999999999999999 44322 22322110 0 000000 001111
Q ss_pred HHHHcCC-------CCCHHHHHHHHHHHHHhcCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEGK-------IVPSEVTIKLLQKAMEESGNDKF----LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~----ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+.... ....+...+.+.+.+..-..... -+..+...++|+..+++++..+|+++| ||+|+
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lll-LDEPt 169 (500)
T TIGR02633 97 ENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLI-LDEPS 169 (500)
T ss_pred HHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEE-EeCCC
Confidence 1111110 01122222233333333211111 123456679999999999988998777 99998
No 469
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.4e-06 Score=66.55 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=27.6
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+-++++.++.+++|.|++|||||||++.|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999999999999994
No 470
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1.8e-06 Score=68.12 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=26.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++++.++.+++|+|++|||||||++.|+.
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 55678999999999999999999999995
No 471
>PLN03130 ABC transporter C family member; Provisional
Probab=98.35 E-value=8.5e-07 Score=84.94 Aligned_cols=116 Identities=15% Similarity=0.255 Sum_probs=68.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH-HHHH-HHHHHcCCh----hhHHHHHHHHcCCCCCHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLL-RAEIKSGSE----NGTMIQNMIKEGKIVPSEVTIKL 88 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~-~di~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
++.++++.+++|+|++|||||||++.|...+. ... |.+. +.......+ ...++++-+..+...+++...+.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~v 713 (1622)
T PLN03130 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERA 713 (1622)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHH
Confidence 45678999999999999999999999996663 222 2221 111110000 11222333333444444444444
Q ss_pred HHHH-----HHh-cCCCcEEEe--C--CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 89 LQKA-----MEE-SGNDKFLID--G--FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 89 l~~~-----l~~-~~~~~~ild--g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
++.. +.. +++....+. | ...+++|+..++|++-.++++++ ||+|+
T Consensus 714 l~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlL-LDEpt 768 (1622)
T PLN03130 714 IDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI-FDDPL 768 (1622)
T ss_pred HHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEE-ECCCc
Confidence 3322 221 223222232 1 45669999999999988999888 99987
No 472
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=6.7e-07 Score=67.58 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+++..++.+.+|.||+|+||||+.+.|..++.
T Consensus 21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 21 SLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred ceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 56788999999999999999999999996663
No 473
>PLN02796 D-glycerate 3-kinase
Probab=98.35 E-value=6.5e-06 Score=66.85 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.++.+|+|+|++||||||+++.|...+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4678899999999999999999998774
No 474
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=7.3e-06 Score=63.93 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 23 INLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 356778999999999999999999999994
No 475
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.35 E-value=2.5e-06 Score=73.16 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=26.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+|++|||||||++.|+.
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 283 SLEVRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 45678899999999999999999999993
No 476
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=9.2e-07 Score=69.34 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|+|++|||||||++.|+.
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 31 VSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356778999999999999999999999994
No 477
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.34 E-value=6.1e-07 Score=77.73 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=31.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d 54 (182)
+-++.+.++.+++|+|++|||||||++.|+ |....+.|.
T Consensus 25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~---G~~~p~~G~ 63 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMA---GVDKEFEGE 63 (556)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence 345678999999999999999999999999 543333443
No 478
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.34 E-value=7.6e-07 Score=76.21 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
++.+.++.+++|+|++|||||||++.|+
T Consensus 272 sl~i~~Ge~~~liG~NGsGKSTLl~~l~ 299 (501)
T PRK10762 272 SFTLRKGEILGVSGLMGAGRTELMKVLY 299 (501)
T ss_pred eEEEcCCcEEEEecCCCCCHHHHHHHHh
Confidence 5567889999999999999999999999
No 479
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=2e-06 Score=75.27 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=88.0
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-------HH------cCCh---hhHHHHH------H
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-------IK------SGSE---NGTMIQN------M 73 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-------~~------~~~~---~~~~~~~------~ 73 (182)
....++.+.+|+||+|||||||.+.|+.+..-..-..|+++-+. .. .+.+ -....++ .
T Consensus 51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~ 130 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSAL 130 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHH
Confidence 34678899999999999999999999955431111111221111 11 0000 0111111 1
Q ss_pred HHcCCCCCHHHHHHHHHHHHHh---cCCCcEEEe-----CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH--------
Q 030176 74 IKEGKIVPSEVTIKLLQKAMEE---SGNDKFLID-----GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM-------- 137 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~l~~---~~~~~~ild-----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l-------- 137 (182)
+.-....+.+...+.+++.+.+ ......++. |....++.+..++..+-.+|.+++ +|+|+..|
T Consensus 131 lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLf-lDEPTSGLDS~sA~~v 209 (613)
T KOG0061|consen 131 LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILF-LDEPTSGLDSFSALQV 209 (613)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEE-ecCCCCCcchhhHHHH
Confidence 1112223334444444444433 112222332 456678889999988888997655 99999222
Q ss_pred ---HHHHHhhh--ccCCCCCcchHHHHHHHHHhhhhhccccccccc
Q 030176 138 ---ERRILNRN--QVRQKLPFSWGVFCLFIMLSFSSCISIPFSYFG 178 (182)
Q Consensus 138 ---~~R~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (182)
.+++.+.+ .--..|..+.+-|..+=+..+.+.+. .-|+|
T Consensus 210 v~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~--~vy~G 253 (613)
T KOG0061|consen 210 VQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGE--VVYSG 253 (613)
T ss_pred HHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCc--EEEec
Confidence 22333221 12234566788888888888888776 33444
No 480
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.7e-05 Score=59.18 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.5
Q ss_pred HhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 119 VTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 119 ~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.....+|.+|||.++++++.+|+..|.
T Consensus 149 ~~~v~~dgiIYLrasPetc~~Ri~~R~ 175 (244)
T KOG4235|consen 149 SMDVSLDGIIYLRASPETCYKRIYLRA 175 (244)
T ss_pred ccccccceEEEeecChHHHHHHHHHHh
Confidence 344578999999999999999999983
No 481
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.33 E-value=3.5e-06 Score=60.34 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=63.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l---g-~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (182)
.+.-+++.+|.|+|.+||||||+|-+|.+.+ | ..++-.+|=++...+. +.+...++-.++- +. +.-+.
T Consensus 25 ~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~F~a~dR~ENI-----RR-igeVa 96 (207)
T KOG0635|consen 25 KLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLGFKAEDRNENI-----RR-IGEVA 96 (207)
T ss_pred HHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccCcchhhhhhhH-----HH-HHHHH
Confidence 3445889999999999999999998888776 3 3333333444443332 1222211111110 01 11112
Q ss_pred HHHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 91 KAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
++.. +...+-+..+-. -+..+...+......+.+-||+|+|.+.+.+|-
T Consensus 97 KLFA--Dag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 97 KLFA--DAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARD 146 (207)
T ss_pred HHHh--ccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccC
Confidence 2221 112222333322 234444555555555778899999999998874
No 482
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.33 E-value=8.6e-07 Score=74.40 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=66.0
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHH-cCChhhHHHHHH----------HHcC
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIK-SGSENGTMIQNM----------IKEG 77 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg----~~~~~~~di~~~~~~-~~~~~~~~~~~~----------~~~~ 77 (182)
+-++..++++.++++||+|+||||+.+.|.+-|. ...+|..|+-.-... ....+|...|+- +.-+
T Consensus 556 disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIrya 635 (790)
T KOG0056|consen 556 DISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYA 635 (790)
T ss_pred cceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeec
Confidence 5567789999999999999999999999998774 334555444111000 011122222221 1111
Q ss_pred C-CCCHHHHHHHHHH-----HHHh-c-CCCcEEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 K-IVPSEVTIKLLQK-----AMEE-S-GNDKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 ~-~~~~~~~~~~l~~-----~l~~-~-~~~~~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...++.+.++.+. .+.+ + +...-+=+ | .....+|+..+++..-..|.+++ ||+.+
T Consensus 636 k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl-LDEAT 702 (790)
T KOG0056|consen 636 KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL-LDEAT 702 (790)
T ss_pred CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE-Ecchh
Confidence 1 1224444444332 2222 1 11111111 1 23568999999999887886544 88865
No 483
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=7.2e-06 Score=64.33 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++++.++.+++|+|++|||||||++.|+..
T Consensus 25 ~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567789999999999999999999999954
No 484
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=1.5e-06 Score=67.86 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++.+.++.+++|+|++|||||||++.|+..
T Consensus 23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 23 INMDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999954
No 485
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.33 E-value=6.9e-07 Score=77.41 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=61.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---HH--cC----ChhhHHHHHHHHcCC---CC--
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---IK--SG----SENGTMIQNMIKEGK---IV-- 80 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---~~--~~----~~~~~~~~~~~~~~~---~~-- 80 (182)
++++.++.+++|+|++|||||||++.|+ |....+.|.+.... .. .+ ........+.+.... ..
T Consensus 344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~---G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 420 (556)
T PRK11819 344 SFSLPPGGIVGIIGPNGAGKSTLFKMIT---GQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGN 420 (556)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccc
Confidence 4567889999999999999999999999 54333333332100 00 00 000011111111110 01
Q ss_pred CHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 81 PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 81 ~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.......++............-+..+...++|+..+++++..+|+++| ||+|+
T Consensus 421 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll-LDEPt 473 (556)
T PRK11819 421 REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL-LDEPT 473 (556)
T ss_pred cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 111111222221111000011133456679999999999988998877 99997
No 486
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.32 E-value=2.9e-07 Score=71.80 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 356778999999999999999999999993
No 487
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.32 E-value=2e-06 Score=74.14 Aligned_cols=116 Identities=15% Similarity=0.232 Sum_probs=70.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH--------HHHcCChhhHHHHHHHHcC---CCCCH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA--------EIKSGSENGTMIQNMIKEG---KIVPS 82 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~ 82 (182)
.++..+++.-+.|.|++|||||||.++|+.-.. .-.|.+... -..+-...| .+++.+... ..+++
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d 487 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPADSALLFLPQRPYLPQG-TLREALCYPNAAPDFSD 487 (604)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCCCCceEEecCCCCCCCc-cHHHHHhCCCCCCCCCh
Confidence 355678899999999999999999999994432 222332211 111112233 333332221 12666
Q ss_pred HHHHHHHHHHHHh------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHH
Q 030176 83 EVTIKLLQKAMEE------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (182)
Q Consensus 83 ~~~~~~l~~~l~~------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~ 135 (182)
+.+.+.|.+.... +....+ -+-...+++|+..+++.+-+.|++++ ||+.++
T Consensus 488 ~~l~~vL~~vgL~~L~~rl~~~~~W-~~vLS~GEqQRlafARilL~kP~~v~-LDEATs 544 (604)
T COG4178 488 AELVAVLHKVGLGDLAERLDEEDRW-DRVLSGGEQQRLAFARLLLHKPKWVF-LDEATS 544 (604)
T ss_pred HHHHHHHHHcCcHHHHHHHhccCcH-hhhcChhHHHHHHHHHHHHcCCCEEE-Eecchh
Confidence 7666666654322 111112 22245679999999999988998777 998773
No 488
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.32 E-value=2.9e-07 Score=87.64 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=68.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHH-------HHHHHHcCChh----hHHHHHHHHcCCCC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDL-------LRAEIKSGSEN----GTMIQNMIKEGKIV 80 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di-------~~~~~~~~~~~----~~~~~~~~~~~~~~ 80 (182)
++.++++..|+|+|++|||||||++.|.+-+. -..++.-++ ++..+..-++. .-++++-+.-....
T Consensus 1239 s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~ 1318 (1490)
T TIGR01271 1239 SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW 1318 (1490)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCC
Confidence 45678999999999999999999999985542 112221111 22222211111 11222222212234
Q ss_pred CHHHHHHHHHHHH-----Hh-cCC-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 81 PSEVTIKLLQKAM-----EE-SGN-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 81 ~~~~~~~~l~~~l-----~~-~~~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.++.+.++++..- .+ +.+ +..|-++ +...++|+.++++++-.++.++| ||+++
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl-LDEaT 1381 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL-LDEPS 1381 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE-EeCCc
Confidence 5666666665432 11 112 2222222 45569999999999988888777 99987
No 489
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=4.2e-06 Score=66.09 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=27.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.+++|+|++|||||||++.|+..
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567789999999999999999999999943
No 490
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.32 E-value=7.5e-07 Score=76.70 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 305 ISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356778999999999999999999999994
No 491
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=3.2e-06 Score=65.92 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 356778999999999999999999999984
No 492
>PLN03211 ABC transporter G-25; Provisional
Probab=98.31 E-value=1.1e-06 Score=77.56 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=63.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC------cEecHHHH---HHHHHHc--CC---hhhHHHHHHHHc----
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDL---LRAEIKS--GS---ENGTMIQNMIKE---- 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~------~~~~~~di---~~~~~~~--~~---~~~~~~~~~~~~---- 76 (182)
++.+.++.+++|+||+|||||||.+.|+..+.- ..++..++ .+..... +. .......+.+..
T Consensus 88 s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~ 167 (659)
T PLN03211 88 TGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLL 167 (659)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHh
Confidence 445788999999999999999999999944311 11111111 1111110 00 001112221111
Q ss_pred --CCCCCHHHHHHHHHHHHHh----cCCCcEE----EeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 --GKIVPSEVTIKLLQKAMEE----SGNDKFL----IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 --~~~~~~~~~~~~l~~~l~~----~~~~~~i----ldg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
......+...+.+.+.+.. ...+..+ ..+....++++..+++++..+|++++ +|+|+
T Consensus 168 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl-LDEPt 234 (659)
T PLN03211 168 RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI-LDEPT 234 (659)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE-EeCCC
Confidence 1112222222333333332 1111222 23466779999999999988998766 99998
No 493
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=8.6e-06 Score=64.20 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=27.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++.+.++.+++|.|++|||||||++.|+..+
T Consensus 38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35667899999999999999999999999543
No 494
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.31 E-value=2.8e-06 Score=73.00 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++.+.++.+++|+|++|||||||++.|+.
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G 332 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAG 332 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356678999999999999999999999993
No 495
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=2.3e-06 Score=69.51 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++++.++.+++|+|++|||||||++.|+...
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35667899999999999999999999999443
No 496
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.1e-05 Score=62.82 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=27.8
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+-++++.++.+++|+|++|||||||++.|+..
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33567789999999999999999999999853
No 497
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.9e-06 Score=68.09 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=27.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++.+.++.+++|+|++|||||||++.|+..
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 566789999999999999999999999944
No 498
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.29 E-value=3.6e-06 Score=69.02 Aligned_cols=110 Identities=23% Similarity=0.347 Sum_probs=63.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChh--------hHHHHHH-----HHcCCC-CCH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN--------GTMIQNM-----IKEGKI-VPS 82 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~--------~~~~~~~-----~~~~~~-~~~ 82 (182)
.+.++.+++|+|.+||||||+++.|. |....+.|+|+.+...-..+. ...+.++ .-.... -..
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLt---GL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~ 421 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLT---GLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASP 421 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHh---cccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCCh
Confidence 46889999999999999999999999 888888888766554422211 1222221 111122 334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeC------CCCCHHHHHHHHHHhCCCCcEEEEEec
Q 030176 83 EVTIKLLQKAMEESGNDKFLIDG------FPRNEENRAAFEAVTKIEPEFVLFFDC 132 (182)
Q Consensus 83 ~~~~~~l~~~l~~~~~~~~ildg------~~~~~~q~~~l~~~~~~~~~~vI~ld~ 132 (182)
+.+...++.+..+. ...+-|+ ....++.+..+.-++.-+-|+++ +|+
T Consensus 422 q~i~~~LqrLel~~--ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv-~DE 474 (546)
T COG4615 422 QLIEKWLQRLELAH--KTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV-LDE 474 (546)
T ss_pred HHHHHHHHHHHHhh--hhcccCCcccccccccchHHHHHHHHHHHhhCCeEE-eeh
Confidence 55566665544431 2222333 22345555555555544555666 765
No 499
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.29 E-value=1.8e-06 Score=73.70 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=26.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+|++|||||||++.|+.
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 296 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcC
Confidence 45678899999999999999999999993
No 500
>PRK06761 hypothetical protein; Provisional
Probab=98.29 E-value=9.8e-06 Score=64.30 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
+++|+|+|+|||||||+++.|++.+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 468999999999999999999999864
Done!