Query 030176
Match_columns 182
No_of_seqs 108 out of 1361
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 15:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 99.9 7.9E-25 2.7E-29 166.2 19.1 136 15-151 23-162 (217)
2 3sr0_A Adenylate kinase; phosp 99.9 5.4E-24 1.8E-28 160.6 18.2 122 22-145 1-125 (206)
3 3gmt_A Adenylate kinase; ssgci 99.9 6.4E-22 2.2E-26 151.0 17.3 123 22-145 9-132 (230)
4 2cdn_A Adenylate kinase; phosp 99.9 1.8E-20 6E-25 140.2 19.6 158 1-163 1-162 (201)
5 2c95_A Adenylate kinase 1; tra 99.9 3.9E-20 1.3E-24 137.2 21.1 127 19-146 7-135 (196)
6 1qf9_A UMP/CMP kinase, protein 99.9 3.9E-20 1.3E-24 136.7 20.9 144 20-163 5-150 (194)
7 3tlx_A Adenylate kinase 2; str 99.9 1.5E-20 5.2E-25 144.9 18.6 128 18-145 26-157 (243)
8 2bwj_A Adenylate kinase 5; pho 99.9 1.4E-20 4.6E-25 140.0 16.5 126 20-146 11-138 (199)
9 3dl0_A Adenylate kinase; phosp 99.9 7.1E-20 2.4E-24 138.3 18.3 122 23-144 2-127 (216)
10 3fb4_A Adenylate kinase; psych 99.9 1.1E-19 3.9E-24 137.1 19.1 122 23-144 2-127 (216)
11 3be4_A Adenylate kinase; malar 99.8 8.7E-20 3E-24 138.2 17.1 125 21-145 5-133 (217)
12 1ukz_A Uridylate kinase; trans 99.8 5.3E-19 1.8E-23 132.2 20.9 128 18-146 12-143 (203)
13 3cm0_A Adenylate kinase; ATP-b 99.8 1.8E-19 6.1E-24 132.8 16.4 123 19-145 2-127 (186)
14 1aky_A Adenylate kinase; ATP:A 99.8 2.9E-19 1E-23 135.4 17.9 126 20-145 3-133 (220)
15 1tev_A UMP-CMP kinase; ploop, 99.8 8.8E-19 3E-23 129.6 19.9 127 20-146 2-136 (196)
16 1ak2_A Adenylate kinase isoenz 99.8 9.6E-19 3.3E-23 133.8 20.4 127 19-145 14-144 (233)
17 2xb4_A Adenylate kinase; ATP-b 99.8 3.1E-19 1.1E-23 135.8 17.1 124 22-145 1-127 (223)
18 1zd8_A GTP:AMP phosphotransfer 99.8 1E-18 3.6E-23 133.0 16.4 125 19-145 5-129 (227)
19 1e4v_A Adenylate kinase; trans 99.8 1.8E-18 6E-23 130.6 17.3 122 23-145 2-124 (214)
20 1zak_A Adenylate kinase; ATP:A 99.8 1.2E-18 4.1E-23 132.2 15.5 125 20-145 4-130 (222)
21 3lw7_A Adenylate kinase relate 99.8 2.1E-17 7.1E-22 119.8 15.4 133 22-162 2-138 (179)
22 2bbw_A Adenylate kinase 4, AK4 99.7 1E-15 3.4E-20 117.8 17.5 124 20-145 26-149 (246)
23 2rhm_A Putative kinase; P-loop 99.6 9.1E-15 3.1E-19 107.8 13.7 122 19-146 3-127 (193)
24 3vaa_A Shikimate kinase, SK; s 99.6 9.1E-15 3.1E-19 109.0 12.5 115 15-142 19-136 (199)
25 3t61_A Gluconokinase; PSI-biol 99.6 3.1E-14 1.1E-18 106.1 15.3 113 20-145 17-132 (202)
26 1ly1_A Polynucleotide kinase; 99.6 1.4E-14 4.6E-19 105.7 12.5 117 21-145 2-127 (181)
27 4eaq_A DTMP kinase, thymidylat 99.5 7.5E-13 2.6E-17 101.0 17.1 146 18-169 23-194 (229)
28 2pbr_A DTMP kinase, thymidylat 99.5 5.3E-13 1.8E-17 98.2 14.7 117 22-144 1-143 (195)
29 3kb2_A SPBC2 prophage-derived 99.5 4.2E-13 1.4E-17 97.0 12.6 99 22-144 2-115 (173)
30 4eun_A Thermoresistant glucoki 99.5 3.7E-13 1.3E-17 100.3 12.4 119 15-145 23-146 (200)
31 1ltq_A Polynucleotide kinase; 99.5 7.5E-13 2.6E-17 104.3 14.6 122 21-145 2-127 (301)
32 1kht_A Adenylate kinase; phosp 99.5 3.8E-13 1.3E-17 98.8 12.0 117 20-143 2-135 (192)
33 1nks_A Adenylate kinase; therm 99.5 5.3E-13 1.8E-17 98.1 12.5 114 22-143 2-136 (194)
34 1y63_A LMAJ004144AAA protein; 99.5 1.9E-13 6.6E-18 100.6 9.7 115 15-145 4-122 (184)
35 2iyv_A Shikimate kinase, SK; t 99.5 2.9E-13 9.9E-18 99.3 10.1 111 22-145 3-115 (184)
36 1knq_A Gluconate kinase; ALFA/ 99.5 3.2E-12 1.1E-16 93.0 14.9 112 19-145 6-125 (175)
37 1e6c_A Shikimate kinase; phosp 99.4 8E-13 2.8E-17 95.7 11.1 109 22-144 3-116 (173)
38 2pt5_A Shikimate kinase, SK; a 99.4 1.8E-12 6.3E-17 93.5 12.6 110 22-145 1-114 (168)
39 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 2.2E-13 7.5E-18 105.7 8.2 112 20-145 3-121 (260)
40 3trf_A Shikimate kinase, SK; a 99.4 2.9E-12 9.9E-17 93.9 13.8 109 21-141 5-115 (185)
41 3zvl_A Bifunctional polynucleo 99.4 1.8E-12 6.3E-17 107.0 13.8 103 17-146 254-359 (416)
42 2z0h_A DTMP kinase, thymidylat 99.4 5.1E-12 1.7E-16 93.3 14.9 116 22-144 1-142 (197)
43 3iij_A Coilin-interacting nucl 99.4 2E-13 7E-18 99.8 7.2 111 18-145 8-118 (180)
44 1qhx_A CPT, protein (chloramph 99.4 3.9E-12 1.3E-16 92.6 13.8 121 20-145 2-134 (178)
45 1jjv_A Dephospho-COA kinase; P 99.4 1.9E-12 6.6E-17 96.6 12.4 37 22-59 3-39 (206)
46 1zuh_A Shikimate kinase; alpha 99.4 5E-13 1.7E-17 96.7 8.8 106 22-144 8-117 (168)
47 4i1u_A Dephospho-COA kinase; s 99.4 8.9E-12 3.1E-16 93.7 15.6 127 22-162 10-164 (210)
48 1cke_A CK, MSSA, protein (cyti 99.4 1.6E-12 5.4E-17 98.3 11.5 40 21-60 5-44 (227)
49 2vli_A Antibiotic resistance p 99.4 3.7E-12 1.2E-16 93.1 13.0 114 19-145 3-126 (183)
50 4hlc_A DTMP kinase, thymidylat 99.4 5.5E-12 1.9E-16 94.7 14.1 138 21-168 2-169 (205)
51 3nwj_A ATSK2; P loop, shikimat 99.4 2.1E-12 7.1E-17 99.8 11.9 119 15-144 39-162 (250)
52 2f6r_A COA synthase, bifunctio 99.4 6E-12 2E-16 98.8 14.5 120 18-145 72-221 (281)
53 2if2_A Dephospho-COA kinase; a 99.4 9.5E-13 3.2E-17 98.1 8.4 38 22-60 2-39 (204)
54 1vht_A Dephospho-COA kinase; s 99.4 5.1E-12 1.8E-16 95.1 12.5 40 20-60 3-42 (218)
55 4edh_A DTMP kinase, thymidylat 99.4 1.4E-11 4.7E-16 93.0 14.1 142 19-167 4-174 (213)
56 3ake_A Cytidylate kinase; CMP 99.4 2.4E-11 8E-16 90.4 15.2 38 23-60 4-41 (208)
57 2wwf_A Thymidilate kinase, put 99.4 1.5E-13 5.3E-18 102.7 3.3 122 19-144 8-151 (212)
58 3v9p_A DTMP kinase, thymidylat 99.4 1.6E-12 5.6E-17 99.0 8.6 144 18-168 22-195 (227)
59 1uj2_A Uridine-cytidine kinase 99.4 4.5E-13 1.5E-17 103.4 5.2 113 19-145 20-172 (252)
60 1uf9_A TT1252 protein; P-loop, 99.4 8.6E-12 2.9E-16 92.4 11.9 41 19-60 6-46 (203)
61 1via_A Shikimate kinase; struc 99.4 8.9E-13 3E-17 96.1 6.0 108 23-145 6-114 (175)
62 2v54_A DTMP kinase, thymidylat 99.4 6.4E-12 2.2E-16 93.3 10.8 114 19-139 2-137 (204)
63 1gvn_B Zeta; postsegregational 99.4 2.6E-11 8.8E-16 95.4 14.8 122 18-145 30-163 (287)
64 1kag_A SKI, shikimate kinase I 99.3 2.3E-12 8E-17 93.4 8.0 113 20-145 3-118 (173)
65 1nn5_A Similar to deoxythymidy 99.3 2.3E-12 8E-17 96.4 7.8 123 18-144 6-150 (215)
66 4e22_A Cytidylate kinase; P-lo 99.3 2E-11 6.9E-16 94.2 12.8 41 19-59 25-65 (252)
67 4tmk_A Protein (thymidylate ki 99.3 6.2E-11 2.1E-15 89.4 14.8 141 20-168 2-176 (213)
68 2p5t_B PEZT; postsegregational 99.3 1.7E-11 5.7E-16 94.6 11.7 122 17-145 28-158 (253)
69 2plr_A DTMP kinase, probable t 99.3 6.7E-12 2.3E-16 93.5 8.8 110 20-145 3-144 (213)
70 2grj_A Dephospho-COA kinase; T 99.3 7.3E-12 2.5E-16 93.1 8.8 43 20-62 11-53 (192)
71 3lv8_A DTMP kinase, thymidylat 99.3 7.2E-12 2.5E-16 96.0 8.4 144 18-168 24-198 (236)
72 2yvu_A Probable adenylyl-sulfa 99.3 4.1E-11 1.4E-15 87.9 12.1 113 15-143 7-132 (186)
73 3uie_A Adenylyl-sulfate kinase 99.3 8E-11 2.7E-15 87.6 13.4 109 17-141 21-140 (200)
74 1q3t_A Cytidylate kinase; nucl 99.3 1.8E-10 6E-15 87.9 15.3 44 17-60 12-55 (236)
75 2jaq_A Deoxyguanosine kinase; 99.3 3.5E-11 1.2E-15 89.1 10.5 30 22-51 1-30 (205)
76 3r20_A Cytidylate kinase; stru 99.2 2.6E-10 8.7E-15 87.1 14.2 42 19-60 7-48 (233)
77 2h92_A Cytidylate kinase; ross 99.2 2.7E-11 9.4E-16 91.0 8.0 40 20-59 2-41 (219)
78 4gp7_A Metallophosphoesterase; 99.2 8.5E-11 2.9E-15 85.5 10.1 113 15-145 3-122 (171)
79 2qt1_A Nicotinamide riboside k 99.2 5.8E-12 2E-16 94.1 3.8 121 17-145 17-151 (207)
80 1m7g_A Adenylylsulfate kinase; 99.2 1.3E-10 4.5E-15 87.1 10.9 107 17-141 21-149 (211)
81 3fdi_A Uncharacterized protein 99.2 1.4E-10 4.8E-15 86.7 10.7 114 20-145 5-138 (201)
82 3ld9_A DTMP kinase, thymidylat 99.2 6E-11 2.1E-15 90.1 8.8 120 18-144 18-165 (223)
83 2pez_A Bifunctional 3'-phospho 99.2 2.5E-10 8.5E-15 83.3 10.8 113 19-143 3-124 (179)
84 3hdt_A Putative kinase; struct 99.1 1.6E-09 5.4E-14 82.3 14.4 42 19-61 12-53 (223)
85 2qor_A Guanylate kinase; phosp 99.1 2.8E-10 9.7E-15 84.8 9.8 30 17-46 8-37 (204)
86 2vp4_A Deoxynucleoside kinase; 99.1 2.5E-10 8.6E-15 86.8 8.1 31 14-44 13-43 (230)
87 3hjn_A DTMP kinase, thymidylat 99.1 2.4E-09 8.1E-14 79.7 13.1 133 22-168 1-160 (197)
88 2ze6_A Isopentenyl transferase 99.0 7.8E-10 2.7E-14 85.4 8.8 122 22-146 2-140 (253)
89 1x6v_B Bifunctional 3'-phospho 99.0 3E-09 1E-13 91.6 12.6 115 19-143 50-171 (630)
90 2axn_A 6-phosphofructo-2-kinas 99.0 1.2E-08 4.1E-13 86.4 16.1 125 19-148 33-172 (520)
91 3tmk_A Thymidylate kinase; pho 99.0 7.1E-10 2.4E-14 83.8 6.2 140 19-170 3-168 (216)
92 3tif_A Uncharacterized ABC tra 99.0 2.2E-10 7.7E-15 87.6 2.7 117 14-134 24-173 (235)
93 2bdt_A BH3686; alpha-beta prot 99.0 1.3E-08 4.4E-13 74.6 12.1 114 21-145 2-123 (189)
94 3tui_C Methionine import ATP-b 98.9 5.3E-10 1.8E-14 90.5 4.1 117 14-134 47-191 (366)
95 1m8p_A Sulfate adenylyltransfe 98.9 1.4E-08 4.6E-13 87.0 12.5 108 18-142 393-514 (573)
96 3ch4_B Pmkase, phosphomevalona 98.9 2.4E-08 8.4E-13 74.3 12.3 119 20-142 10-145 (202)
97 1rz3_A Hypothetical protein rb 98.9 5.2E-10 1.8E-14 83.3 3.2 116 18-145 19-165 (201)
98 3gfo_A Cobalt import ATP-bindi 98.9 4.3E-10 1.5E-14 87.9 2.8 116 15-134 28-171 (275)
99 2gks_A Bifunctional SAT/APS ki 98.9 8.7E-09 3E-13 87.7 10.9 113 19-142 370-488 (546)
100 3fvq_A Fe(3+) IONS import ATP- 98.9 4.1E-11 1.4E-15 96.9 -3.4 117 14-134 23-166 (359)
101 1p5z_B DCK, deoxycytidine kina 98.9 1.7E-09 6E-14 83.6 5.8 33 18-50 21-54 (263)
102 3rlf_A Maltose/maltodextrin im 98.9 4.1E-10 1.4E-14 91.7 1.5 117 14-134 22-161 (381)
103 1a7j_A Phosphoribulokinase; tr 98.9 1.6E-09 5.4E-14 85.3 4.5 38 20-57 4-46 (290)
104 3tqc_A Pantothenate kinase; bi 98.9 1.9E-09 6.5E-14 86.0 4.9 28 19-46 90-117 (321)
105 3tr0_A Guanylate kinase, GMP k 98.9 8.4E-08 2.9E-12 70.8 13.6 30 17-46 3-32 (205)
106 2it1_A 362AA long hypothetical 98.8 5.9E-10 2E-14 90.3 1.7 116 14-134 22-161 (362)
107 3asz_A Uridine kinase; cytidin 98.8 9.7E-09 3.3E-13 76.5 8.2 38 19-56 4-43 (211)
108 1v43_A Sugar-binding transport 98.8 6.1E-10 2.1E-14 90.5 1.8 116 15-134 31-169 (372)
109 2olj_A Amino acid ABC transpor 98.8 1.1E-08 3.7E-13 79.5 8.2 116 15-134 44-187 (263)
110 2ocp_A DGK, deoxyguanosine kin 98.8 8.1E-09 2.8E-13 78.8 7.2 29 20-48 1-30 (241)
111 1z47_A CYSA, putative ABC-tran 98.8 8.6E-10 2.9E-14 89.1 1.7 117 14-134 34-173 (355)
112 2pcj_A ABC transporter, lipopr 98.8 1.1E-09 3.8E-14 83.1 2.2 116 15-134 24-168 (224)
113 1p6x_A Thymidine kinase; P-loo 98.8 2.3E-08 8E-13 80.0 10.0 29 19-47 5-33 (334)
114 2jeo_A Uridine-cytidine kinase 98.8 3.5E-08 1.2E-12 75.5 10.5 35 14-48 18-52 (245)
115 1sgw_A Putative ABC transporte 98.8 2.7E-09 9.1E-14 80.5 4.1 114 15-134 29-161 (214)
116 2yyz_A Sugar ABC transporter, 98.8 4.7E-10 1.6E-14 90.8 -0.3 117 14-134 22-161 (359)
117 4g1u_C Hemin import ATP-bindin 98.8 6.2E-10 2.1E-14 86.7 0.4 116 15-134 31-175 (266)
118 1zp6_A Hypothetical protein AT 98.8 1.5E-08 5.1E-13 74.2 7.6 120 16-145 4-127 (191)
119 1vpl_A ABC transporter, ATP-bi 98.8 1.3E-09 4.5E-14 84.3 1.4 116 15-134 35-174 (256)
120 1bif_A 6-phosphofructo-2-kinas 98.8 3.9E-08 1.3E-12 82.2 10.3 122 19-145 37-173 (469)
121 1b0u_A Histidine permease; ABC 98.8 1.4E-08 4.7E-13 78.8 6.8 30 14-43 25-54 (262)
122 3d31_A Sulfate/molybdate ABC t 98.8 8.5E-10 2.9E-14 88.9 -0.2 114 14-134 19-155 (348)
123 1oxx_K GLCV, glucose, ABC tran 98.8 9.2E-10 3.1E-14 88.9 -0.1 117 14-134 24-168 (353)
124 1gtv_A TMK, thymidylate kinase 98.7 3.5E-10 1.2E-14 84.4 -2.6 25 22-46 1-25 (214)
125 3c8u_A Fructokinase; YP_612366 98.7 7.5E-09 2.6E-13 77.3 4.7 29 18-46 19-47 (208)
126 1ji0_A ABC transporter; ATP bi 98.7 1.3E-09 4.4E-14 83.6 0.5 115 15-134 26-167 (240)
127 2onk_A Molybdate/tungstate ABC 98.7 9.3E-10 3.2E-14 84.4 -0.4 115 15-134 19-154 (240)
128 1sq5_A Pantothenate kinase; P- 98.7 4E-08 1.4E-12 77.8 8.6 28 19-46 78-105 (308)
129 3gd7_A Fusion complex of cysti 98.7 5.1E-10 1.7E-14 91.5 -2.7 118 15-137 41-186 (390)
130 3tau_A Guanylate kinase, GMP k 98.7 1.7E-08 5.9E-13 75.4 5.9 28 19-46 6-33 (208)
131 1g29_1 MALK, maltose transport 98.7 4E-10 1.4E-14 91.6 -3.4 117 14-134 22-167 (372)
132 1ex7_A Guanylate kinase; subst 98.7 2.1E-07 7.2E-12 68.6 11.4 24 23-46 3-26 (186)
133 1g6h_A High-affinity branched- 98.7 9.9E-10 3.4E-14 85.0 -1.2 29 15-43 27-55 (257)
134 2ihy_A ABC transporter, ATP-bi 98.7 3.5E-09 1.2E-13 83.0 1.7 29 15-43 41-69 (279)
135 3a8t_A Adenylate isopentenyltr 98.7 2.7E-09 9.3E-14 85.4 1.1 36 20-55 39-74 (339)
136 3a00_A Guanylate kinase, GMP k 98.7 3.7E-09 1.3E-13 77.6 1.7 26 21-46 1-26 (186)
137 1osn_A Thymidine kinase, VZV-T 98.7 6.1E-08 2.1E-12 77.7 8.2 30 18-47 9-39 (341)
138 2yz2_A Putative ABC transporte 98.7 3.6E-09 1.2E-13 82.3 0.8 116 14-134 26-166 (266)
139 2nq2_C Hypothetical ABC transp 98.7 5.4E-09 1.8E-13 80.7 1.6 116 15-134 25-156 (253)
140 2qi9_C Vitamin B12 import ATP- 98.7 1.3E-09 4.3E-14 84.1 -2.0 114 15-134 20-161 (249)
141 3nh6_A ATP-binding cassette SU 98.7 6E-09 2E-13 82.6 1.8 116 15-134 74-218 (306)
142 3lnc_A Guanylate kinase, GMP k 98.6 4.2E-08 1.4E-12 74.3 6.3 32 14-45 20-52 (231)
143 2ff7_A Alpha-hemolysin translo 98.6 3.7E-09 1.3E-13 81.4 0.4 117 14-134 28-173 (247)
144 1mv5_A LMRA, multidrug resista 98.6 4.4E-09 1.5E-13 80.7 0.5 117 14-134 21-167 (243)
145 2d2e_A SUFC protein; ABC-ATPas 98.6 1E-08 3.5E-13 79.0 2.5 28 15-42 23-50 (250)
146 3j16_B RLI1P; ribosome recycli 98.6 5.2E-08 1.8E-12 83.9 7.0 36 17-55 99-134 (608)
147 1of1_A Thymidine kinase; trans 98.6 1.9E-07 6.6E-12 75.7 9.8 29 18-46 46-74 (376)
148 2cbz_A Multidrug resistance-as 98.6 4.2E-09 1.4E-13 80.6 -0.0 116 14-134 24-155 (237)
149 3b5x_A Lipid A export ATP-bind 98.6 1.8E-08 6E-13 86.4 3.7 116 15-134 363-508 (582)
150 2zu0_C Probable ATP-dependent 98.6 4.4E-08 1.5E-12 76.2 5.5 29 15-43 40-68 (267)
151 2pjz_A Hypothetical protein ST 98.6 3.6E-09 1.2E-13 82.2 -1.1 114 15-134 25-156 (263)
152 2pze_A Cystic fibrosis transme 98.6 1.8E-09 6.1E-14 82.2 -2.9 115 15-134 28-158 (229)
153 1e2k_A Thymidine kinase; trans 98.6 2.1E-07 7.3E-12 74.3 8.5 28 19-46 2-29 (331)
154 2ixe_A Antigen peptide transpo 98.6 1.2E-08 4.1E-13 79.5 1.1 116 15-134 39-184 (271)
155 3cr8_A Sulfate adenylyltranfer 98.5 3.3E-07 1.1E-11 78.0 9.5 116 17-142 365-487 (552)
156 2bbs_A Cystic fibrosis transme 98.5 3E-08 1E-12 78.0 2.2 114 15-134 58-187 (290)
157 3ozx_A RNAse L inhibitor; ATP 98.5 1.3E-07 4.3E-12 80.4 5.8 36 17-55 21-56 (538)
158 3ozx_A RNAse L inhibitor; ATP 98.4 1.2E-08 4.2E-13 86.6 -1.5 112 18-134 291-413 (538)
159 3qf4_A ABC transporter, ATP-bi 98.4 6.1E-08 2.1E-12 83.2 2.1 116 15-134 363-507 (587)
160 2yl4_A ATP-binding cassette SU 98.4 1.4E-08 4.7E-13 87.3 -2.0 116 15-134 364-511 (595)
161 4a82_A Cystic fibrosis transme 98.4 1.7E-08 5.7E-13 86.5 -1.9 116 15-134 361-505 (578)
162 4f4c_A Multidrug resistance pr 98.4 1.3E-06 4.4E-11 81.2 10.6 119 15-134 438-582 (1321)
163 4f4c_A Multidrug resistance pr 98.4 7E-08 2.4E-12 89.7 2.0 116 15-134 1099-1245(1321)
164 3b60_A Lipid A export ATP-bind 98.4 3E-08 1E-12 85.0 -0.5 116 15-134 363-508 (582)
165 3bk7_A ABC transporter ATP-bin 98.4 3.9E-08 1.3E-12 84.7 0.0 112 18-134 379-499 (607)
166 1yqt_A RNAse L inhibitor; ATP- 98.4 4.7E-07 1.6E-11 76.9 6.4 35 17-54 43-77 (538)
167 2j41_A Guanylate kinase; GMP, 98.4 2.2E-07 7.6E-12 68.6 3.6 29 17-45 2-30 (207)
168 3qf4_B Uncharacterized ABC tra 98.4 1.8E-08 6.1E-13 86.7 -2.9 116 15-134 375-519 (598)
169 3j16_B RLI1P; ribosome recycli 98.3 1E-07 3.4E-12 82.1 1.5 110 20-134 377-495 (608)
170 3bk7_A ABC transporter ATP-bin 98.3 6E-07 2.1E-11 77.3 5.3 35 17-54 113-147 (607)
171 1kgd_A CASK, peripheral plasma 98.3 5.6E-07 1.9E-11 65.5 4.0 28 19-46 3-30 (180)
172 1yqt_A RNAse L inhibitor; ATP- 98.3 5.4E-08 1.9E-12 82.7 -1.7 109 18-134 309-429 (538)
173 3crm_A TRNA delta(2)-isopenten 98.2 4.6E-07 1.6E-11 72.2 2.9 35 21-55 5-39 (323)
174 1z6g_A Guanylate kinase; struc 98.2 7.3E-07 2.5E-11 67.0 3.4 33 13-45 15-47 (218)
175 3ney_A 55 kDa erythrocyte memb 98.2 1.2E-06 4.2E-11 65.0 4.1 32 15-46 13-44 (197)
176 1htw_A HI0065; nucleotide-bind 98.2 1.3E-06 4.6E-11 62.5 4.2 31 15-45 27-57 (158)
177 3g5u_A MCG1178, multidrug resi 98.2 4E-07 1.4E-11 84.4 1.7 115 15-134 410-554 (1284)
178 3d3q_A TRNA delta(2)-isopenten 98.2 6.2E-07 2.1E-11 71.9 2.5 35 21-55 7-41 (340)
179 1dek_A Deoxynucleoside monopho 98.2 1.7E-06 5.7E-11 66.2 4.6 40 22-61 2-41 (241)
180 3ec2_A DNA replication protein 98.1 3E-06 1E-10 61.4 5.6 44 15-58 32-81 (180)
181 1lvg_A Guanylate kinase, GMP k 98.1 1.2E-06 3.9E-11 64.9 3.3 27 19-45 2-28 (198)
182 3g5u_A MCG1178, multidrug resi 98.1 3.7E-07 1.3E-11 84.7 0.5 116 15-134 1053-1199(1284)
183 1znw_A Guanylate kinase, GMP k 98.1 1.6E-06 5.5E-11 64.4 3.8 31 16-46 15-45 (207)
184 1s96_A Guanylate kinase, GMP k 98.1 1.8E-06 6.1E-11 65.1 4.0 31 16-46 11-41 (219)
185 3t15_A Ribulose bisphosphate c 98.1 3.5E-06 1.2E-10 66.1 5.8 38 18-55 33-72 (293)
186 3exa_A TRNA delta(2)-isopenten 98.1 1.3E-06 4.3E-11 69.3 2.8 36 20-55 2-37 (322)
187 3foz_A TRNA delta(2)-isopenten 98.1 2.5E-06 8.7E-11 67.5 3.8 36 19-54 8-43 (316)
188 1ye8_A Protein THEP1, hypothet 98.1 2.5E-06 8.6E-11 62.2 3.5 26 22-47 1-26 (178)
189 3aez_A Pantothenate kinase; tr 98.0 3.6E-06 1.2E-10 66.8 4.6 28 18-45 87-114 (312)
190 2v9p_A Replication protein E1; 98.0 3.9E-06 1.3E-10 66.3 4.2 31 15-45 120-150 (305)
191 2x8a_A Nuclear valosin-contain 98.0 5.2E-06 1.8E-10 64.6 4.3 30 17-48 42-71 (274)
192 2ghi_A Transport protein; mult 98.0 3E-06 1E-10 65.5 2.9 119 15-134 40-183 (260)
193 1odf_A YGR205W, hypothetical 3 98.0 5.8E-06 2E-10 64.9 4.5 30 17-46 27-56 (290)
194 3syl_A Protein CBBX; photosynt 98.0 4E-05 1.4E-09 59.9 9.1 27 19-45 65-91 (309)
195 4b4t_M 26S protease regulatory 97.9 8.2E-06 2.8E-10 67.4 4.9 34 17-50 211-244 (434)
196 2w0m_A SSO2452; RECA, SSPF, un 97.9 8.6E-06 2.9E-10 60.7 4.7 43 3-45 3-47 (235)
197 4b4t_K 26S protease regulatory 97.9 9.4E-06 3.2E-10 67.0 5.0 34 17-50 202-235 (428)
198 4b4t_L 26S protease subunit RP 97.9 9.4E-06 3.2E-10 67.2 4.9 34 17-50 211-244 (437)
199 3eph_A TRNA isopentenyltransfe 97.9 5.8E-06 2E-10 67.6 3.5 34 21-54 2-35 (409)
200 2chg_A Replication factor C sm 97.9 0.00019 6.5E-09 52.5 11.6 23 23-45 40-62 (226)
201 1svm_A Large T antigen; AAA+ f 97.9 1E-05 3.5E-10 65.8 4.9 37 15-51 163-199 (377)
202 4b4t_J 26S protease regulatory 97.9 9.3E-06 3.2E-10 66.4 4.4 34 17-50 178-211 (405)
203 2ehv_A Hypothetical protein PH 97.9 8.3E-06 2.8E-10 61.6 3.9 26 17-42 26-51 (251)
204 1g8f_A Sulfate adenylyltransfe 97.9 5.9E-06 2E-10 69.7 3.3 30 18-47 392-421 (511)
205 3b9q_A Chloroplast SRP recepto 97.9 1.1E-05 3.8E-10 63.7 4.6 29 17-45 96-124 (302)
206 3cf0_A Transitional endoplasmi 97.9 1.3E-05 4.3E-10 63.1 4.7 43 18-60 46-90 (301)
207 4a74_A DNA repair and recombin 97.9 6.9E-06 2.4E-10 61.3 2.9 29 17-45 21-49 (231)
208 2qz4_A Paraplegin; AAA+, SPG7, 97.8 1.5E-05 5.2E-10 60.7 4.8 32 19-50 37-68 (262)
209 1lv7_A FTSH; alpha/beta domain 97.8 1.6E-05 5.3E-10 60.8 4.9 29 21-49 45-73 (257)
210 2eyu_A Twitching motility prot 97.8 1.2E-05 4.2E-10 62.1 4.2 28 18-45 22-49 (261)
211 1ixz_A ATP-dependent metallopr 97.8 1.3E-05 4.6E-10 61.0 4.3 32 24-55 52-85 (254)
212 3ux8_A Excinuclease ABC, A sub 97.8 1.2E-05 3.9E-10 70.0 4.3 25 14-38 37-61 (670)
213 3b9p_A CG5977-PA, isoform A; A 97.8 1.6E-05 5.4E-10 62.0 4.7 30 20-49 53-82 (297)
214 3h4m_A Proteasome-activating n 97.8 1.7E-05 5.7E-10 61.4 4.7 32 19-50 49-80 (285)
215 3czq_A Putative polyphosphate 97.8 5.1E-05 1.7E-09 59.7 7.2 28 19-46 84-111 (304)
216 1in4_A RUVB, holliday junction 97.8 1.6E-05 5.4E-10 63.4 4.4 28 21-48 51-78 (334)
217 4b4t_H 26S protease regulatory 97.8 1.6E-05 5.3E-10 66.1 4.5 34 17-50 239-272 (467)
218 4b4t_I 26S protease regulatory 97.8 2E-05 6.8E-10 64.9 5.0 34 17-50 212-245 (437)
219 2kjq_A DNAA-related protein; s 97.8 1.3E-05 4.6E-10 56.6 3.4 26 20-45 35-60 (149)
220 2i3b_A HCR-ntpase, human cance 97.8 1.3E-05 4.6E-10 58.9 3.5 25 21-45 1-25 (189)
221 2og2_A Putative signal recogni 97.8 1.8E-05 6.2E-10 63.9 4.5 29 17-45 153-181 (359)
222 3b85_A Phosphate starvation-in 97.8 1.2E-05 4.2E-10 60.0 3.0 26 18-43 19-44 (208)
223 3pvs_A Replication-associated 97.8 0.00012 4E-09 60.8 9.0 29 22-50 51-79 (447)
224 3e70_C DPA, signal recognition 97.7 2.3E-05 8E-10 62.5 4.5 28 18-45 126-153 (328)
225 1d2n_A N-ethylmaleimide-sensit 97.7 2.4E-05 8.2E-10 60.3 4.4 33 18-50 61-93 (272)
226 1iy2_A ATP-dependent metallopr 97.7 2.4E-05 8.1E-10 60.6 4.3 32 24-55 76-109 (278)
227 1rj9_A FTSY, signal recognitio 97.7 2.1E-05 7.3E-10 62.1 4.1 26 20-45 101-126 (304)
228 2yhs_A FTSY, cell division pro 97.7 2.5E-05 8.4E-10 65.5 4.6 31 15-45 287-317 (503)
229 2cvh_A DNA repair and recombin 97.7 3E-05 1E-09 57.4 4.6 30 17-46 16-45 (220)
230 3hws_A ATP-dependent CLP prote 97.7 2.4E-05 8.4E-10 62.9 4.3 36 20-55 50-87 (363)
231 3eie_A Vacuolar protein sortin 97.7 3.1E-05 1.1E-09 61.3 4.8 36 20-55 50-87 (322)
232 2qmh_A HPR kinase/phosphorylas 97.7 1.8E-05 6.3E-10 58.7 3.1 39 13-52 26-64 (205)
233 2qen_A Walker-type ATPase; unk 97.7 0.0013 4.3E-08 51.8 13.8 33 21-53 31-63 (350)
234 1jbk_A CLPB protein; beta barr 97.7 3.1E-05 1.1E-09 55.5 4.1 27 19-45 41-67 (195)
235 2qm8_A GTPase/ATPase; G protei 97.7 3.4E-05 1.2E-09 61.7 4.6 31 15-45 49-79 (337)
236 1cr0_A DNA primase/helicase; R 97.7 3.4E-05 1.2E-09 60.2 4.5 31 15-45 29-59 (296)
237 1lw7_A Transcriptional regulat 97.7 2E-05 6.9E-10 63.5 3.2 31 17-47 164-196 (365)
238 1xwi_A SKD1 protein; VPS4B, AA 97.7 3.7E-05 1.3E-09 61.0 4.7 30 19-48 43-73 (322)
239 2npi_A Protein CLP1; CLP1-PCF1 97.7 1E-05 3.5E-10 67.4 1.3 31 14-44 131-161 (460)
240 1g41_A Heat shock protein HSLU 97.6 3.6E-05 1.2E-09 63.8 4.3 32 20-51 49-80 (444)
241 1fnn_A CDC6P, cell division co 97.6 0.0013 4.4E-08 52.6 13.4 23 23-45 46-68 (389)
242 1sxj_D Activator 1 41 kDa subu 97.6 0.00036 1.2E-08 55.2 10.0 24 23-46 60-83 (353)
243 3bos_A Putative DNA replicatio 97.6 3.8E-05 1.3E-09 57.3 4.1 27 20-46 51-77 (242)
244 1vma_A Cell division protein F 97.6 4.3E-05 1.5E-09 60.4 4.5 28 18-45 101-128 (306)
245 1ofh_A ATP-dependent HSL prote 97.6 4.4E-05 1.5E-09 59.4 4.4 30 20-49 49-78 (310)
246 2qp9_X Vacuolar protein sortin 97.6 4.4E-05 1.5E-09 61.4 4.5 36 20-55 83-120 (355)
247 2w58_A DNAI, primosome compone 97.6 9.2E-05 3.1E-09 54.3 5.9 37 22-58 55-96 (202)
248 2ga8_A Hypothetical 39.9 kDa p 97.6 1.5E-05 5.1E-10 64.2 1.6 30 20-49 23-52 (359)
249 2p65_A Hypothetical protein PF 97.6 4.1E-05 1.4E-09 54.8 3.8 27 19-45 41-67 (187)
250 3kta_A Chromosome segregation 97.6 4.1E-05 1.4E-09 55.3 3.8 31 15-46 21-51 (182)
251 1xjc_A MOBB protein homolog; s 97.6 4.6E-05 1.6E-09 55.1 3.9 25 21-45 4-28 (169)
252 3sop_A Neuronal-specific septi 97.6 1.9E-05 6.6E-10 61.3 1.9 34 22-58 3-36 (270)
253 1um8_A ATP-dependent CLP prote 97.6 4.8E-05 1.6E-09 61.4 4.3 31 20-50 71-101 (376)
254 3d8b_A Fidgetin-like protein 1 97.6 5.6E-05 1.9E-09 60.8 4.6 31 19-49 115-145 (357)
255 1n0w_A DNA repair protein RAD5 97.6 3.3E-05 1.1E-09 58.1 2.9 35 10-44 11-47 (243)
256 2r62_A Cell division protease 97.6 2.1E-05 7.3E-10 60.3 1.8 29 21-49 44-72 (268)
257 1np6_A Molybdopterin-guanine d 97.6 6E-05 2E-09 54.7 4.1 25 21-45 6-30 (174)
258 2ewv_A Twitching motility prot 97.6 5.6E-05 1.9E-09 61.3 4.2 28 18-45 133-160 (372)
259 1tue_A Replication protein E1; 97.6 5.6E-05 1.9E-09 56.4 3.8 29 19-47 56-84 (212)
260 1sxj_A Activator 1 95 kDa subu 97.5 6.5E-05 2.2E-09 63.4 4.6 31 20-50 76-106 (516)
261 2gza_A Type IV secretion syste 97.5 1.8E-05 6E-10 64.0 1.0 31 15-45 169-199 (361)
262 2f1r_A Molybdopterin-guanine d 97.5 2.4E-05 8.3E-10 56.6 1.6 24 22-45 3-26 (171)
263 3jvv_A Twitching mobility prot 97.5 6.6E-05 2.3E-09 60.5 4.3 27 19-45 121-147 (356)
264 2qag_B Septin-6, protein NEDD5 97.5 5.5E-05 1.9E-09 62.4 3.8 30 13-42 32-63 (427)
265 2z4s_A Chromosomal replication 97.5 0.0027 9.2E-08 52.4 14.0 36 21-56 130-172 (440)
266 1l8q_A Chromosomal replication 97.5 0.00011 3.8E-09 58.0 5.4 37 20-56 36-77 (324)
267 1njg_A DNA polymerase III subu 97.5 6.8E-05 2.3E-09 55.6 3.9 26 21-46 45-70 (250)
268 3euj_A Chromosome partition pr 97.5 1.8E-05 6.2E-10 66.2 0.8 30 15-45 24-53 (483)
269 1u0l_A Probable GTPase ENGC; p 97.5 4.4E-05 1.5E-09 60.1 2.9 39 16-57 164-202 (301)
270 2c9o_A RUVB-like 1; hexameric 97.5 8.2E-05 2.8E-09 61.8 4.7 27 20-46 62-88 (456)
271 3pfi_A Holliday junction ATP-d 97.5 7.6E-05 2.6E-09 59.1 4.3 29 21-49 55-83 (338)
272 3m6a_A ATP-dependent protease 97.5 8.2E-05 2.8E-09 63.2 4.6 29 20-48 107-135 (543)
273 2ce7_A Cell division protein F 97.5 0.00011 3.8E-09 61.4 5.2 30 21-50 49-78 (476)
274 2px0_A Flagellar biosynthesis 97.5 7.9E-05 2.7E-09 58.6 4.0 27 19-45 103-129 (296)
275 1zu4_A FTSY; GTPase, signal re 97.5 0.0001 3.5E-09 58.6 4.5 29 17-45 101-129 (320)
276 3uk6_A RUVB-like 2; hexameric 97.5 8.8E-05 3E-09 59.3 4.2 28 20-47 69-96 (368)
277 1nlf_A Regulatory protein REPA 97.5 6.4E-05 2.2E-09 58.2 3.2 27 18-44 27-53 (279)
278 1p9r_A General secretion pathw 97.4 0.0001 3.5E-09 60.7 4.4 28 19-46 165-192 (418)
279 3vfd_A Spastin; ATPase, microt 97.4 0.00012 4E-09 59.5 4.7 31 20-50 147-177 (389)
280 2rcn_A Probable GTPase ENGC; Y 97.4 5.7E-05 1.9E-09 60.9 2.8 35 19-56 213-248 (358)
281 4fcw_A Chaperone protein CLPB; 97.4 0.0001 3.5E-09 57.5 4.2 24 22-45 48-71 (311)
282 2zan_A Vacuolar protein sortin 97.4 0.00011 3.9E-09 60.7 4.5 40 19-58 165-207 (444)
283 3n70_A Transport activator; si 97.4 9.1E-05 3.1E-09 51.7 3.3 25 21-45 24-48 (145)
284 2dr3_A UPF0273 protein PH0284; 97.4 0.00011 3.9E-09 55.2 4.0 27 18-44 20-46 (247)
285 3czp_A Putative polyphosphate 97.4 0.00049 1.7E-08 57.8 8.2 28 19-46 41-68 (500)
286 3cf2_A TER ATPase, transitiona 97.4 9.5E-05 3.2E-09 65.5 4.0 38 18-55 235-274 (806)
287 1a5t_A Delta prime, HOLB; zinc 97.4 0.0011 3.7E-08 52.7 9.9 143 20-165 23-179 (334)
288 1ypw_A Transitional endoplasmi 97.4 0.0001 3.5E-09 65.4 4.3 39 17-55 234-274 (806)
289 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00013 4.4E-09 61.4 4.6 32 23-54 66-99 (499)
290 2www_A Methylmalonic aciduria 97.4 0.00012 4.1E-09 58.8 4.3 27 19-45 72-98 (349)
291 1sxj_B Activator 1 37 kDa subu 97.4 0.0015 5E-08 50.9 10.4 22 24-45 45-66 (323)
292 2qby_A CDC6 homolog 1, cell di 97.4 0.00012 4.2E-09 58.3 4.3 27 19-45 43-69 (386)
293 1t9h_A YLOQ, probable GTPase E 97.4 2.3E-05 7.9E-10 62.0 -0.1 38 16-56 168-205 (307)
294 1pui_A ENGB, probable GTP-bind 97.4 6.5E-05 2.2E-09 55.1 2.3 27 16-42 21-47 (210)
295 1pzn_A RAD51, DNA repair and r 97.4 8.1E-05 2.8E-09 59.8 2.9 30 16-45 126-155 (349)
296 2pt7_A CAG-ALFA; ATPase, prote 97.4 2.4E-05 8E-10 62.5 -0.2 30 16-45 166-195 (330)
297 3czp_A Putative polyphosphate 97.4 0.00058 2E-08 57.4 8.1 123 19-163 298-451 (500)
298 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00012 4E-09 57.5 3.6 29 21-49 38-66 (324)
299 2orw_A Thymidine kinase; TMTK, 97.3 0.00016 5.3E-09 52.8 4.0 26 20-45 2-27 (184)
300 2qby_B CDC6 homolog 3, cell di 97.3 0.00018 6.3E-09 57.6 4.7 27 19-45 43-69 (384)
301 2h57_A ADP-ribosylation factor 97.3 0.0001 3.4E-09 53.3 2.8 27 17-43 17-43 (190)
302 2dpy_A FLII, flagellum-specifi 97.3 0.00014 4.9E-09 60.2 4.0 34 13-46 149-182 (438)
303 2obl_A ESCN; ATPase, hydrolase 97.3 0.00016 5.4E-09 58.1 4.1 35 12-46 62-96 (347)
304 2v1u_A Cell division control p 97.3 0.00013 4.5E-09 58.3 3.6 27 19-45 42-68 (387)
305 1tq4_A IIGP1, interferon-induc 97.3 6.7E-05 2.3E-09 61.7 1.9 22 22-43 70-91 (413)
306 1sxj_C Activator 1 40 kDa subu 97.3 0.00014 4.9E-09 57.8 3.5 22 24-45 49-70 (340)
307 3kl4_A SRP54, signal recogniti 97.3 0.00017 5.7E-09 59.7 3.8 26 20-45 96-121 (433)
308 1oix_A RAS-related protein RAB 97.3 0.00016 5.5E-09 52.6 3.2 24 21-44 29-52 (191)
309 3hu3_A Transitional endoplasmi 97.2 0.00024 8.2E-09 59.6 4.6 38 19-56 236-275 (489)
310 2p67_A LAO/AO transport system 97.2 0.00025 8.5E-09 56.7 4.5 30 16-45 51-80 (341)
311 1nij_A Hypothetical protein YJ 97.2 0.00015 5.2E-09 57.4 3.1 24 21-44 4-27 (318)
312 2gno_A DNA polymerase III, gam 97.2 0.00098 3.4E-08 52.5 7.8 127 21-165 18-151 (305)
313 1sxj_E Activator 1 40 kDa subu 97.2 0.00018 6E-09 57.3 3.5 22 24-45 39-60 (354)
314 2iw3_A Elongation factor 3A; a 97.2 2.3E-05 8E-10 70.6 -1.9 29 15-43 693-721 (986)
315 3hr8_A Protein RECA; alpha and 97.2 0.00018 6E-09 58.0 3.4 28 18-45 58-85 (356)
316 2iw3_A Elongation factor 3A; a 97.2 0.00012 4E-09 66.1 2.6 115 15-134 455-576 (986)
317 2r44_A Uncharacterized protein 97.2 0.00014 4.8E-09 57.5 2.7 27 22-48 47-73 (331)
318 2yv5_A YJEQ protein; hydrolase 97.2 0.0002 6.9E-09 56.3 3.6 29 17-46 161-189 (302)
319 1tf7_A KAIC; homohexamer, hexa 97.2 0.0002 6.8E-09 60.5 3.6 27 15-41 32-59 (525)
320 2h17_A ADP-ribosylation factor 97.2 0.0002 6.7E-09 51.4 3.1 26 18-43 18-43 (181)
321 3u61_B DNA polymerase accessor 97.2 0.00024 8.2E-09 55.9 3.9 32 19-50 46-77 (324)
322 2wji_A Ferrous iron transport 97.2 0.00023 7.7E-09 50.4 3.4 22 21-42 3-24 (165)
323 1c9k_A COBU, adenosylcobinamid 97.2 0.00017 5.7E-09 52.7 2.5 25 23-48 1-25 (180)
324 2wjg_A FEOB, ferrous iron tran 97.2 0.00027 9.1E-09 50.7 3.6 24 20-43 6-29 (188)
325 3p32_A Probable GTPase RV1496/ 97.2 0.0003 1E-08 56.5 4.3 27 19-45 77-103 (355)
326 3te6_A Regulatory protein SIR3 97.2 0.00018 6E-09 57.2 2.8 28 18-45 42-69 (318)
327 2a5j_A RAS-related protein RAB 97.2 0.00019 6.6E-09 51.9 2.8 25 19-43 19-43 (191)
328 3cf2_A TER ATPase, transitiona 97.2 0.00028 9.7E-09 62.5 4.3 40 18-57 508-549 (806)
329 1zd9_A ADP-ribosylation factor 97.2 0.00022 7.6E-09 51.5 3.1 43 1-43 1-44 (188)
330 2gj8_A MNME, tRNA modification 97.2 0.00027 9.4E-09 50.4 3.5 24 20-43 3-26 (172)
331 1ls1_A Signal recognition part 97.2 0.00031 1.1E-08 55.0 4.1 26 20-45 97-122 (295)
332 2f9l_A RAB11B, member RAS onco 97.2 0.00026 9.1E-09 51.6 3.5 23 22-44 6-28 (199)
333 3dm5_A SRP54, signal recogniti 97.2 0.00029 1E-08 58.3 4.1 26 20-45 99-124 (443)
334 3lda_A DNA repair protein RAD5 97.2 0.00019 6.4E-09 58.8 2.8 25 18-42 175-199 (400)
335 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00032 1.1E-08 49.4 3.7 25 21-45 23-47 (149)
336 1jr3_A DNA polymerase III subu 97.1 0.0003 1E-08 56.1 3.9 27 21-47 38-64 (373)
337 2wsm_A Hydrogenase expression/ 97.1 0.00038 1.3E-08 51.5 4.2 27 19-45 28-54 (221)
338 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.00021 7.1E-09 57.7 3.0 29 15-44 18-46 (365)
339 2qgz_A Helicase loader, putati 97.1 0.00033 1.1E-08 55.2 4.0 39 21-59 152-196 (308)
340 3tqf_A HPR(Ser) kinase; transf 97.1 0.00031 1.1E-08 50.9 3.5 33 19-52 14-46 (181)
341 2oap_1 GSPE-2, type II secreti 97.1 0.00017 5.9E-09 60.8 2.4 28 18-45 257-284 (511)
342 1z0f_A RAB14, member RAS oncog 97.1 0.00029 9.8E-09 49.9 3.2 25 19-43 13-37 (179)
343 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00024 8.2E-09 56.5 2.9 28 18-45 120-147 (331)
344 3ux8_A Excinuclease ABC, A sub 97.1 0.00011 3.7E-09 63.9 1.0 27 15-41 342-368 (670)
345 3co5_A Putative two-component 97.1 8.1E-05 2.8E-09 51.9 0.1 25 22-46 28-52 (143)
346 1g8p_A Magnesium-chelatase 38 97.1 0.00018 6.2E-09 57.0 2.1 23 24-46 48-70 (350)
347 1z06_A RAS-related protein RAB 97.1 0.00035 1.2E-08 50.4 3.4 24 20-43 19-42 (189)
348 2gf9_A RAS-related protein RAB 97.1 0.00033 1.1E-08 50.5 3.2 43 1-43 1-44 (189)
349 4aby_A DNA repair protein RECN 97.1 0.0001 3.5E-09 60.1 0.5 31 15-46 55-85 (415)
350 2b8t_A Thymidine kinase; deoxy 97.1 0.00049 1.7E-08 51.8 4.2 27 19-45 10-36 (223)
351 2zts_A Putative uncharacterize 97.1 0.00041 1.4E-08 52.1 3.8 32 12-43 19-52 (251)
352 3oes_A GTPase rhebl1; small GT 97.1 0.00035 1.2E-08 51.0 3.3 28 16-43 19-46 (201)
353 2r2a_A Uncharacterized protein 97.1 0.00041 1.4E-08 51.3 3.6 23 21-43 5-27 (199)
354 2zr9_A Protein RECA, recombina 97.1 0.00032 1.1E-08 56.3 3.2 28 18-45 58-85 (349)
355 2bjv_A PSP operon transcriptio 97.0 0.00032 1.1E-08 53.6 3.1 26 21-46 29-54 (265)
356 1j8m_F SRP54, signal recogniti 97.0 0.00045 1.6E-08 54.2 4.0 25 21-45 98-122 (297)
357 1u0j_A DNA replication protein 97.0 0.00056 1.9E-08 52.9 4.3 27 21-47 104-130 (267)
358 1ypw_A Transitional endoplasmi 97.0 0.00021 7.2E-09 63.4 2.1 31 19-49 509-539 (806)
359 2hf9_A Probable hydrogenase ni 97.0 0.00058 2E-08 50.7 4.2 27 19-45 36-62 (226)
360 1u94_A RECA protein, recombina 97.0 0.00053 1.8E-08 55.2 4.2 28 18-45 60-87 (356)
361 4bas_A ADP-ribosylation factor 97.0 0.00039 1.3E-08 50.2 3.1 26 17-42 13-38 (199)
362 3pxg_A Negative regulator of g 97.0 0.00053 1.8E-08 57.1 4.2 26 20-45 200-225 (468)
363 1v5w_A DMC1, meiotic recombina 97.0 0.00052 1.8E-08 54.9 3.9 28 17-44 118-145 (343)
364 2q3h_A RAS homolog gene family 97.0 0.00051 1.8E-08 49.9 3.6 26 17-42 16-41 (201)
365 3bh0_A DNAB-like replicative h 97.0 0.0006 2E-08 53.9 4.2 38 8-45 54-92 (315)
366 1iqp_A RFCS; clamp loader, ext 97.0 0.00059 2E-08 53.2 4.2 23 23-45 48-70 (327)
367 1kao_A RAP2A; GTP-binding prot 97.0 0.00054 1.8E-08 47.7 3.5 23 21-43 3-25 (167)
368 2v3c_C SRP54, signal recogniti 97.0 0.00038 1.3E-08 57.5 3.1 26 20-45 98-123 (432)
369 3szr_A Interferon-induced GTP- 97.0 0.00022 7.5E-09 61.4 1.5 30 23-55 47-77 (608)
370 1wb9_A DNA mismatch repair pro 96.9 0.00045 1.6E-08 61.2 3.5 25 19-43 605-629 (800)
371 1yrb_A ATP(GTP)binding protein 96.9 0.00077 2.6E-08 51.2 4.4 29 17-45 10-38 (262)
372 1qhl_A Protein (cell division 96.9 1.5E-05 5E-10 60.4 -5.2 32 22-56 28-59 (227)
373 2ce2_X GTPase HRAS; signaling 96.9 0.00059 2E-08 47.4 3.5 23 22-44 4-26 (166)
374 2dyk_A GTP-binding protein; GT 96.9 0.00062 2.1E-08 47.3 3.6 23 22-44 2-24 (161)
375 2ged_A SR-beta, signal recogni 96.9 0.00068 2.3E-08 48.8 3.9 26 19-44 46-71 (193)
376 2lkc_A Translation initiation 96.9 0.00067 2.3E-08 48.0 3.8 25 19-43 6-30 (178)
377 3k1j_A LON protease, ATP-depen 96.9 0.00043 1.5E-08 59.4 3.1 28 19-46 58-85 (604)
378 3iev_A GTP-binding protein ERA 96.9 0.00045 1.5E-08 54.4 3.0 28 15-42 4-31 (308)
379 3clv_A RAB5 protein, putative; 96.9 0.00083 2.8E-08 48.3 4.3 26 19-44 5-30 (208)
380 2zej_A Dardarin, leucine-rich 96.9 0.00044 1.5E-08 49.7 2.8 22 22-43 3-24 (184)
381 1upt_A ARL1, ADP-ribosylation 96.9 0.00081 2.8E-08 47.2 4.1 25 19-43 5-29 (171)
382 1u8z_A RAS-related protein RAL 96.9 0.00065 2.2E-08 47.3 3.6 23 21-43 4-26 (168)
383 1e69_A Chromosome segregation 96.9 0.00044 1.5E-08 54.7 2.9 29 15-44 19-47 (322)
384 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.00064 2.2E-08 55.5 3.9 27 17-43 16-42 (392)
385 3con_A GTPase NRAS; structural 96.9 0.00051 1.7E-08 49.4 3.1 26 19-44 19-44 (190)
386 1tf7_A KAIC; homohexamer, hexa 96.9 0.00047 1.6E-08 58.2 3.2 29 17-45 277-305 (525)
387 2chq_A Replication factor C sm 96.9 0.00057 2E-08 53.1 3.5 23 23-45 40-62 (319)
388 3k53_A Ferrous iron transport 96.9 0.00066 2.3E-08 52.2 3.7 23 21-43 3-25 (271)
389 3lxw_A GTPase IMAP family memb 96.9 0.00055 1.9E-08 52.1 3.2 24 19-42 19-42 (247)
390 1ega_A Protein (GTP-binding pr 96.9 0.00049 1.7E-08 54.0 3.1 24 19-42 6-29 (301)
391 3thx_B DNA mismatch repair pro 96.9 0.00035 1.2E-08 62.7 2.4 28 15-42 667-694 (918)
392 3ihw_A Centg3; RAS, centaurin, 96.9 0.00075 2.6E-08 48.6 3.8 26 18-43 17-42 (184)
393 3ice_A Transcription terminati 96.9 0.00067 2.3E-08 55.3 3.8 36 10-45 163-198 (422)
394 2r6a_A DNAB helicase, replicat 96.9 0.00076 2.6E-08 55.9 4.2 29 17-45 199-227 (454)
395 1z2a_A RAS-related protein RAB 96.9 0.00063 2.2E-08 47.5 3.2 23 21-43 5-27 (168)
396 1w1w_A Structural maintenance 96.9 0.00075 2.6E-08 55.5 4.0 31 16-46 21-51 (430)
397 2o5v_A DNA replication and rep 96.9 0.00052 1.8E-08 55.3 3.0 28 15-43 21-48 (359)
398 1svi_A GTP-binding protein YSX 96.9 0.00094 3.2E-08 48.1 4.1 24 19-42 21-44 (195)
399 2j37_W Signal recognition part 96.9 0.00075 2.6E-08 56.8 4.0 27 19-45 99-125 (504)
400 2p5s_A RAS and EF-hand domain 96.9 0.00083 2.8E-08 48.8 3.8 27 17-43 24-50 (199)
401 3thx_A DNA mismatch repair pro 96.9 0.00053 1.8E-08 61.7 3.2 28 15-42 656-683 (934)
402 2ffh_A Protein (FFH); SRP54, s 96.9 0.0008 2.8E-08 55.4 4.1 26 20-45 97-122 (425)
403 2fv8_A H6, RHO-related GTP-bin 96.8 0.00057 1.9E-08 50.1 2.9 26 18-43 22-47 (207)
404 1c1y_A RAS-related protein RAP 96.8 0.00075 2.6E-08 47.1 3.4 23 21-43 3-25 (167)
405 2fn4_A P23, RAS-related protei 96.8 0.00086 2.9E-08 47.4 3.7 25 20-44 8-32 (181)
406 2oil_A CATX-8, RAS-related pro 96.8 0.0007 2.4E-08 48.8 3.3 25 19-43 23-47 (193)
407 2z43_A DNA repair and recombin 96.8 0.0006 2.1E-08 54.0 3.1 28 18-45 104-131 (324)
408 3pqc_A Probable GTP-binding pr 96.8 0.00092 3.1E-08 47.9 3.9 25 19-43 21-45 (195)
409 1nrj_B SR-beta, signal recogni 96.8 0.00093 3.2E-08 49.2 3.9 26 19-44 10-35 (218)
410 2nzj_A GTP-binding protein REM 96.8 0.00077 2.6E-08 47.5 3.4 22 21-42 4-25 (175)
411 3bwd_D RAC-like GTP-binding pr 96.8 0.00093 3.2E-08 47.4 3.8 25 19-43 6-30 (182)
412 1fzq_A ADP-ribosylation factor 96.8 0.00089 3E-08 48.0 3.7 25 19-43 14-38 (181)
413 2a9k_A RAS-related protein RAL 96.8 0.00078 2.7E-08 47.9 3.2 25 19-43 16-40 (187)
414 3qks_A DNA double-strand break 96.8 0.00089 3E-08 49.5 3.5 26 21-46 23-48 (203)
415 1moz_A ARL1, ADP-ribosylation 96.8 0.00066 2.3E-08 48.3 2.7 24 19-42 16-39 (183)
416 1ewq_A DNA mismatch repair pro 96.8 0.0007 2.4E-08 59.8 3.3 23 21-43 576-598 (765)
417 2i1q_A DNA repair and recombin 96.8 0.0007 2.4E-08 53.4 3.0 27 18-44 95-121 (322)
418 2erx_A GTP-binding protein DI- 96.8 0.00087 3E-08 46.9 3.2 23 21-43 3-25 (172)
419 1ky3_A GTP-binding protein YPT 96.8 0.00093 3.2E-08 47.3 3.4 24 20-43 7-30 (182)
420 3pxi_A Negative regulator of g 96.8 0.001 3.5E-08 58.5 4.2 27 19-45 199-225 (758)
421 2y8e_A RAB-protein 6, GH09086P 96.8 0.00074 2.5E-08 47.7 2.8 24 20-43 13-36 (179)
422 3nbx_X ATPase RAVA; AAA+ ATPas 96.8 0.00046 1.6E-08 58.0 1.9 25 22-46 42-66 (500)
423 2hxs_A RAB-26, RAS-related pro 96.7 0.0011 3.7E-08 46.9 3.6 24 20-43 5-28 (178)
424 3kkq_A RAS-related protein M-R 96.7 0.0011 3.8E-08 47.2 3.6 26 19-44 16-41 (183)
425 3cph_A RAS-related protein SEC 96.7 0.0012 3.9E-08 48.3 3.8 26 18-43 17-42 (213)
426 2atv_A RERG, RAS-like estrogen 96.7 0.0013 4.3E-08 47.7 3.9 25 19-43 26-50 (196)
427 1g16_A RAS-related protein SEC 96.7 0.001 3.5E-08 46.5 3.3 22 22-43 4-25 (170)
428 3lxx_A GTPase IMAP family memb 96.7 0.00092 3.1E-08 50.3 3.2 24 19-42 27-50 (239)
429 3q72_A GTP-binding protein RAD 96.7 0.0011 3.6E-08 46.4 3.4 21 22-42 3-23 (166)
430 2gf0_A GTP-binding protein DI- 96.7 0.0015 5E-08 47.2 4.1 25 19-43 6-30 (199)
431 1ek0_A Protein (GTP-binding pr 96.7 0.00091 3.1E-08 46.7 2.9 22 22-43 4-25 (170)
432 1gwn_A RHO-related GTP-binding 96.7 0.001 3.6E-08 48.9 3.3 24 20-43 27-50 (205)
433 2xxa_A Signal recognition part 96.7 0.0013 4.4E-08 54.3 4.2 27 19-45 98-124 (433)
434 3q85_A GTP-binding protein REM 96.7 0.0011 3.7E-08 46.5 3.3 21 22-42 3-23 (169)
435 4dsu_A GTPase KRAS, isoform 2B 96.7 0.00096 3.3E-08 47.6 3.0 23 21-43 4-26 (189)
436 1xx6_A Thymidine kinase; NESG, 96.7 0.0016 5.6E-08 47.7 4.3 27 19-45 6-32 (191)
437 1m2o_B GTP-binding protein SAR 96.7 0.0011 3.8E-08 47.9 3.4 24 20-43 22-45 (190)
438 1z08_A RAS-related protein RAB 96.7 0.001 3.5E-08 46.6 3.1 23 21-43 6-28 (170)
439 2g6b_A RAS-related protein RAB 96.7 0.0011 3.9E-08 46.9 3.3 25 19-43 8-32 (180)
440 2b6h_A ADP-ribosylation factor 96.7 0.0016 5.5E-08 47.2 4.1 25 18-42 26-50 (192)
441 1z0j_A RAB-22, RAS-related pro 96.7 0.0013 4.3E-08 46.0 3.5 24 21-44 6-29 (170)
442 3qkt_A DNA double-strand break 96.7 0.0012 4.1E-08 52.6 3.7 24 20-43 22-45 (339)
443 3bc1_A RAS-related protein RAB 96.7 0.0011 3.8E-08 47.3 3.2 24 20-43 10-33 (195)
444 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0016 5.6E-08 57.1 4.9 26 23-48 490-515 (758)
445 2fna_A Conserved hypothetical 96.7 0.0015 5.2E-08 51.3 4.3 25 22-46 31-55 (357)
446 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.0013 4.3E-08 46.5 3.5 23 21-43 7-29 (177)
447 3tw8_B RAS-related protein RAB 96.7 0.00098 3.3E-08 47.1 2.9 23 20-42 8-30 (181)
448 3t5g_A GTP-binding protein RHE 96.7 0.00084 2.9E-08 47.7 2.5 24 20-43 5-28 (181)
449 2qnr_A Septin-2, protein NEDD5 96.7 0.00081 2.8E-08 52.8 2.6 21 22-42 19-39 (301)
450 1ksh_A ARF-like protein 2; sma 96.6 0.0014 4.6E-08 46.9 3.6 25 19-43 16-40 (186)
451 2gco_A H9, RHO-related GTP-bin 96.6 0.0011 3.7E-08 48.4 3.1 24 20-43 24-47 (201)
452 1w5s_A Origin recognition comp 96.6 0.0011 3.7E-08 53.5 3.3 26 20-45 49-76 (412)
453 1xp8_A RECA protein, recombina 96.6 0.0015 5E-08 52.8 4.1 28 18-45 71-98 (366)
454 2ew1_A RAS-related protein RAB 96.6 0.0011 3.8E-08 48.6 3.1 24 20-43 25-48 (201)
455 2iwr_A Centaurin gamma 1; ANK 96.6 0.0011 3.7E-08 47.0 3.0 24 20-43 6-29 (178)
456 2q6t_A DNAB replication FORK h 96.6 0.0015 5.1E-08 54.0 4.2 27 18-44 197-223 (444)
457 1f6b_A SAR1; gtpases, N-termin 96.6 0.0012 4.2E-08 48.1 3.2 24 19-42 23-46 (198)
458 1zj6_A ADP-ribosylation factor 96.6 0.0016 5.5E-08 46.7 3.7 24 19-42 14-37 (187)
459 4a1f_A DNAB helicase, replicat 96.6 0.0017 5.7E-08 52.0 4.1 36 10-45 34-70 (338)
460 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0014 4.7E-08 47.0 3.3 24 20-43 6-29 (184)
461 1r2q_A RAS-related protein RAB 96.6 0.0015 5.2E-08 45.6 3.5 23 21-43 6-28 (170)
462 3tkl_A RAS-related protein RAB 96.6 0.0014 4.7E-08 47.2 3.3 24 20-43 15-38 (196)
463 2bov_A RAla, RAS-related prote 96.6 0.0016 5.6E-08 47.1 3.7 24 20-43 13-36 (206)
464 2xtp_A GTPase IMAP family memb 96.6 0.0016 5.3E-08 49.6 3.7 25 19-43 20-44 (260)
465 3t1o_A Gliding protein MGLA; G 96.6 0.0014 4.7E-08 47.0 3.2 25 21-45 14-38 (198)
466 1r8s_A ADP-ribosylation factor 96.6 0.0018 6.1E-08 45.1 3.6 21 23-43 2-22 (164)
467 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.0014 4.6E-08 46.6 3.1 23 21-43 5-27 (186)
468 3c5c_A RAS-like protein 12; GD 96.6 0.0016 5.4E-08 46.9 3.4 25 19-43 19-43 (187)
469 1ko7_A HPR kinase/phosphatase; 96.5 0.0016 5.6E-08 51.4 3.6 32 20-52 143-174 (314)
470 2efe_B Small GTP-binding prote 96.5 0.0014 4.9E-08 46.4 3.1 24 20-43 11-34 (181)
471 1ojl_A Transcriptional regulat 96.5 0.0016 5.4E-08 51.2 3.5 26 20-45 24-49 (304)
472 2vf7_A UVRA2, excinuclease ABC 96.5 0.0007 2.4E-08 60.3 1.6 24 15-38 30-53 (842)
473 3rhf_A Putative polyphosphate 96.5 0.0064 2.2E-07 47.3 6.9 28 19-46 73-100 (289)
474 2bme_A RAB4A, RAS-related prot 96.5 0.0015 5.2E-08 46.5 3.1 24 20-43 9-32 (186)
475 2cxx_A Probable GTP-binding pr 96.5 0.0015 5.2E-08 46.6 3.1 21 23-43 3-23 (190)
476 3e1s_A Exodeoxyribonuclease V, 96.5 0.0018 6.2E-08 55.3 4.0 26 20-45 203-228 (574)
477 3pih_A Uvrabc system protein A 96.5 0.00075 2.6E-08 60.6 1.7 24 15-38 18-41 (916)
478 1vg8_A RAS-related protein RAB 96.5 0.0017 5.9E-08 47.1 3.4 25 20-44 7-31 (207)
479 3dz8_A RAS-related protein RAB 96.5 0.00097 3.3E-08 48.1 2.0 25 20-44 22-46 (191)
480 2o8b_B DNA mismatch repair pro 96.5 0.0015 5.3E-08 59.3 3.7 21 21-41 789-809 (1022)
481 2vf7_A UVRA2, excinuclease ABC 96.5 0.0004 1.4E-08 61.8 -0.2 28 15-42 517-545 (842)
482 2f7s_A C25KG, RAS-related prot 96.5 0.0015 5.2E-08 48.0 3.0 25 19-43 23-47 (217)
483 2ygr_A Uvrabc system protein A 96.5 0.0006 2.1E-08 61.5 1.0 27 15-41 662-688 (993)
484 2fg5_A RAB-22B, RAS-related pr 96.5 0.0015 5.1E-08 47.2 2.9 25 19-43 21-45 (192)
485 3b1v_A Ferrous iron uptake tra 96.5 0.0019 6.4E-08 50.0 3.6 23 21-43 3-25 (272)
486 2fh5_B SR-beta, signal recogni 96.5 0.002 6.7E-08 47.2 3.5 24 20-43 6-29 (214)
487 2qag_C Septin-7; cell cycle, c 96.5 0.0012 4.2E-08 54.2 2.5 20 23-42 33-52 (418)
488 2qu8_A Putative nucleolar GTP- 96.4 0.0021 7.2E-08 47.8 3.6 24 19-42 27-50 (228)
489 3iby_A Ferrous iron transport 96.4 0.0018 6E-08 49.6 3.2 22 22-43 2-23 (256)
490 3a1s_A Iron(II) transport prot 96.4 0.0015 5.2E-08 50.0 2.9 24 20-43 4-27 (258)
491 2ygr_A Uvrabc system protein A 96.4 0.00084 2.9E-08 60.6 1.5 24 15-38 40-63 (993)
492 2r6f_A Excinuclease ABC subuni 96.4 0.00086 2.9E-08 60.3 1.6 24 15-38 38-61 (972)
493 3i8s_A Ferrous iron transport 96.4 0.0023 7.9E-08 49.4 3.8 24 20-43 2-25 (274)
494 3gj0_A GTP-binding nuclear pro 96.4 0.0016 5.5E-08 48.1 2.8 27 19-45 13-40 (221)
495 3llu_A RAS-related GTP-binding 96.4 0.0022 7.4E-08 46.5 3.4 25 19-43 18-42 (196)
496 1x3s_A RAS-related protein RAB 96.4 0.0015 5.1E-08 46.9 2.4 24 20-43 14-37 (195)
497 2o52_A RAS-related protein RAB 96.4 0.0018 6.3E-08 47.1 2.9 24 19-42 23-46 (200)
498 3reg_A RHO-like small GTPase; 96.4 0.002 6.7E-08 46.5 3.1 25 19-43 21-45 (194)
499 1qvr_A CLPB protein; coiled co 96.4 0.002 6.8E-08 57.5 3.7 25 21-45 191-215 (854)
500 1udx_A The GTP-binding protein 96.4 0.00097 3.3E-08 54.8 1.5 30 15-44 151-180 (416)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.93 E-value=7.9e-25 Score=166.21 Aligned_cols=136 Identities=46% Similarity=0.779 Sum_probs=118.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (182)
.....++++|+|.|||||||+|+|+.|+++||+.+++++|+++.....++..+..++.++..|..+|++.+.+++.+.+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~ 102 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI 102 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 33567889999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred h--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc--cCCCC
Q 030176 95 E--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--VRQKL 151 (182)
Q Consensus 95 ~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~--~r~~~ 151 (182)
+ ....++|+||||+...|...+.... ..++.+|+|++|.+++.+|+..|.. +|.+|
T Consensus 103 ~~~~~~~g~ilDGfPRt~~Qa~~l~~~~-~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD 162 (217)
T 3umf_A 103 KLVDKNCHFLIDGYPRELDQGIKFEKEV-CPCLCVINFDVSEEVMRKRLLKRAETSNRVDD 162 (217)
T ss_dssp HHTTTCSEEEEETBCSSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHSCC------CHH
T ss_pred hccccccCcccccCCCcHHHHHHHHHhC-CccCEEEeccCCHHHHHHHHhcccccCCCCCC
Confidence 5 3456899999999999999987765 4688999999999999999998863 44443
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.92 E-value=5.4e-24 Score=160.61 Aligned_cols=122 Identities=29% Similarity=0.660 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
++|+|.|||||||+|+|+.|+++||+.++++||++++....++..|..++.++..|...|++++.+++.+.+.+ ..++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~ 78 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV 78 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988855 4579
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||||+...|...+...+ +..++.+|+|++|.+++.+|+..|.
T Consensus 79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 9999999999999886654 5678999999999999999999885
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.89 E-value=6.4e-22 Score=150.97 Aligned_cols=123 Identities=35% Similarity=0.646 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK 100 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~ 100 (182)
+..+|+|+|||||||+|+.|++.||+.+++.++++++....+...+..++.++..+...|++.+.+++.+.+.+. ...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g 88 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANG 88 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999988763 3468
Q ss_pred EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 101 ~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+|+||||+...|.+.+.. ....++.+|+|++|.+++.+|+..|.
T Consensus 89 ~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 89 YLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp EEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred eEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 999999999999988854 44568999999999999999999996
No 4
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.87 E-value=1.8e-20 Score=140.21 Aligned_cols=158 Identities=28% Similarity=0.487 Sum_probs=112.6
Q ss_pred CCccccCchhhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCC
Q 030176 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (182)
||.+--+|... .+......+.+|+|+|+|||||||+++.|++.+|+.+++.|++++.........+..+.+.+..+...
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~ 79 (201)
T 2cdn_A 1 MGSSHHHHHHS-SGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV 79 (201)
T ss_dssp ----------------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCcccccccc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcc
Confidence 55555555544 22334566789999999999999999999999999999999999988777777888888888888888
Q ss_pred CHHHHHHHHHHHHHh-cCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchH
Q 030176 81 PSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWG 156 (182)
Q Consensus 81 ~~~~~~~~l~~~l~~-~~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~ 156 (182)
+++.....+.+.+.. ..+.++|+|++|....+...+...+ +..|+++|+|++|.+++.+|+.+| +|.++ +.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~--~~e 155 (201)
T 2cdn_A 80 PSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADD--TDD 155 (201)
T ss_dssp CHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTC--SHH
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCC--CHH
Confidence 887777777665543 2345789999998887776665543 345889999999999999999998 45432 345
Q ss_pred HHHHHHH
Q 030176 157 VFCLFIM 163 (182)
Q Consensus 157 ~~~~~~~ 163 (182)
.+...+.
T Consensus 156 ~~~~r~~ 162 (201)
T 2cdn_A 156 VILNRMK 162 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 5
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.87 E-value=3.9e-20 Score=137.25 Aligned_cols=127 Identities=45% Similarity=0.882 Sum_probs=106.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S 96 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~ 96 (182)
.++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+.+....++...+.. .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 46689999999999999999999999999999999999988777777888888887778777877777777666554 2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
.+.++|+|++|....+...+...+ ..++++|||++|.+++.+|+.+|..
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHccCC
Confidence 457899999999888777666555 4688999999999999999998863
No 6
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.87 E-value=3.9e-20 Score=136.68 Aligned_cols=144 Identities=56% Similarity=0.903 Sum_probs=113.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 99 (182)
.+.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+++....++...+....+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999999887667777888888888888778887777877777655567
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCC--CCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHH
Q 030176 100 KFLIDGFPRNEENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIM 163 (182)
Q Consensus 100 ~~ildg~~~~~~q~~~l~~~~~~--~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~ 163 (182)
.+|+|++|....++..+...+.. .++++|+|++|.+++.+|+.+|.........+.+.+...++
T Consensus 85 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~ 150 (194)
T 1qf9_A 85 NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFN 150 (194)
T ss_dssp CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHH
T ss_pred CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Confidence 89999999998887777655432 57899999999999999999986421122223455554443
No 7
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.87 E-value=1.5e-20 Score=144.95 Aligned_cols=128 Identities=34% Similarity=0.599 Sum_probs=113.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-c
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-S 96 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~ 96 (182)
..++.+|+|+|+|||||||+++.|++++|+.+++.+++++.....+...+..++.++..+...+++.+..++...+.. .
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 357889999999999999999999999999999999999999888889999999999999999999988888877765 2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
...++|+|+||....|...+...+ +..|+.+|+|++|.+++.+|+.+|.
T Consensus 106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 357899999999998888776543 4568999999999999999999985
No 8
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=140.05 Aligned_cols=126 Identities=43% Similarity=0.872 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ 97 (182)
++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+.+....++.+.+... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 46789999999999999999999999999999999998887666777888888887787788877777776665542 4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
+..+|+|+++....++..+.+.+. .|+++|||++|.+++.+|+.+|..
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHHHTCC
T ss_pred CccEEEeCCCCCHHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHcCCC
Confidence 678999999999888777765542 588999999999999999998853
No 9
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.85 E-value=7.1e-20 Score=138.27 Aligned_cols=122 Identities=33% Similarity=0.627 Sum_probs=108.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 101 (182)
.|+|+|+|||||||+++.|++++|+.+++.|++++.....+...+..+.+++..+...+++....++...+.. ..+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGF 81 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCE
Confidence 5899999999999999999999999999999999999998889999999998888889998888888877765 335789
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
|+|++|....+...+...+ +..+|.+|+|++|.+++.+|+.+|
T Consensus 82 ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 82 LLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 9999999988887776543 456889999999999999999998
No 10
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.85 E-value=1.1e-19 Score=137.06 Aligned_cols=122 Identities=34% Similarity=0.690 Sum_probs=108.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 101 (182)
+|+|+|+|||||||+++.|++++|+.+++.+++++.........+..+.+++..+...+++....++.+.+.. ..+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGF 81 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcE
Confidence 6899999999999999999999999999999999999998888999999999999999998888888887765 335689
Q ss_pred EEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 102 LIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
|+|++|....+...+...+ +..++.+|+|++|.+++.+|+.+|
T Consensus 82 ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 82 LLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 9999999988887776543 446889999999999999999988
No 11
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.85 E-value=8.7e-20 Score=138.25 Aligned_cols=125 Identities=32% Similarity=0.622 Sum_probs=105.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGND 99 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~ 99 (182)
+++|+|+|+|||||||+++.|++.+|+.+++.|++++.........+..+.+++..+...+++...+++...+.. ..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 84 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN 84 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 468999999999999999999999999999999999998888778888888888888888888888888777654 2356
Q ss_pred cEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 100 ~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
++|+||||....+...+... .+..||++|||++|.+++.+|+..|.
T Consensus 85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 85 GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 89999999998777776542 34578999999999999999999875
No 12
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.84 E-value=5.3e-19 Score=132.15 Aligned_cols=128 Identities=52% Similarity=0.956 Sum_probs=102.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-cCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE- 95 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 95 (182)
..++.+|+|+|++||||||+++.|++.+|+.+++.|++++.... .+...+..++.++..+...+++....++.+.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 45567999999999999999999999999999999999887654 4556677777777777777777666666655433
Q ss_pred --cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 96 --SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 96 --~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
.+...+++||++....+...+...+. .++++|||++|.+++.+|+.+|..
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIV-ESKFILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhccc
Confidence 22357899999998887777665543 489999999999999999999863
No 13
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.84 E-value=1.8e-19 Score=132.81 Aligned_cols=123 Identities=32% Similarity=0.653 Sum_probs=100.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
.++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+++.....+.+.+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~--- 78 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE--- 78 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC---
Confidence 35678999999999999999999999999999999999988777777788888888888888887777766665432
Q ss_pred CcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
++|+|+++....+...+...+ +..++.+|||++|.+++.+|+.+|.
T Consensus 79 -~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 79 -RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp -EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred -CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 488999998877765544332 2247899999999999999999885
No 14
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.84 E-value=2.9e-19 Score=135.40 Aligned_cols=126 Identities=26% Similarity=0.563 Sum_probs=107.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH-h-cC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-E-SG 97 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~ 97 (182)
++.+|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+++..+...+++....++.+.+. . ..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999999999999999999888888889988888888888898888888887775 2 13
Q ss_pred CCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+.++|+|+||....+...+... .+..||++|+|++|.+++.+|+..|.
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 4678999999988777665443 34578999999999999999999875
No 15
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.83 E-value=8.8e-19 Score=129.56 Aligned_cols=127 Identities=57% Similarity=0.994 Sum_probs=99.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh---
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--- 95 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 95 (182)
++.+|+|+|+|||||||+++.|++.+|+.+++.|++++..... ....+..+++++..+...+++....++...+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999999999999999999887653 345577777777777777776655555443322
Q ss_pred --cCCCcEEEeCCCCCHHHHHHHHHHhCC--CCcEEEEEecCHHHHHHHHHhhhc
Q 030176 96 --SGNDKFLIDGFPRNEENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 96 --~~~~~~ildg~~~~~~q~~~l~~~~~~--~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
..+..+|+|+++....++..+...+.. .++++|||++|.+++.+|+.+|..
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 235788999999988776656554432 477899999999999999999864
No 16
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.83 E-value=9.6e-19 Score=133.83 Aligned_cols=127 Identities=35% Similarity=0.613 Sum_probs=108.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-C
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-G 97 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~ 97 (182)
..+..|+|+|+|||||||+++.|++.+++.+++.++++++........+..+++++..+...+++...+++...+... .
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 93 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC 93 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 455789999999999999999999999999999999999988777888888889888888889988888888776542 2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 98 NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+.++|+|+||....+...+...+ +..++++|+|++|.+++.+|+..|.
T Consensus 94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 45789999999987776654432 3468999999999999999999884
No 17
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.83 E-value=3.1e-19 Score=135.80 Aligned_cols=124 Identities=30% Similarity=0.596 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
++|+|+|+|||||||+++.|++.+|+.+++.|+++++........+..+++++..+...+++.+.+++...+....+.++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 36899999999999999999999999999999999988766777888888888888888888888888777655225689
Q ss_pred EEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+||+|....+...+... .+..|+++|+|++|.+++.+|+.+|.
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 999999988777777553 34568999999999999999999885
No 18
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.81 E-value=1e-18 Score=133.01 Aligned_cols=125 Identities=31% Similarity=0.588 Sum_probs=102.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
.++.+|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+++..+...+++....++.+.+....+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccC
Confidence 34678999999999999999999999999999999999998877777888888888888888887777766666654234
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+|+|+++....+...+... ..++++|+|++|.+.+.+|+.+|.
T Consensus 85 ~~~vid~~~~~~~~~~~l~~~--~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDRA--YQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHTT--SCCCEEEEEECCHHHHHHHHTCEE
T ss_pred CCEEEeCCCCCHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHcCc
Confidence 678899999887776555443 357899999999999999999874
No 19
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.81 E-value=1.8e-18 Score=130.62 Aligned_cols=122 Identities=38% Similarity=0.694 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCcE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKF 101 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 101 (182)
.|+|+|+|||||||+++.|++.+|+.+++.|+++++....+...+..+.+++..+...+++....++...+... ...++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF 81 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence 58999999999999999999999999999999999987777777777777777788888888888888776542 23578
Q ss_pred EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
|+|++|....+...+.. .+..|+++|+|++|.+.+.+|+.+|.
T Consensus 82 i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 82 LLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp EEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred EEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 89999998887766644 33468999999999999999999875
No 20
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.81 E-value=1.2e-18 Score=132.21 Aligned_cols=125 Identities=36% Similarity=0.745 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ 97 (182)
++.+|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+++..+...+++....++.+.+... .
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence 45789999999999999999999999999999999999877777888888888888888888887777666555431 1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..++|+||++....+...+.. .+..|+++|||++|.+.+.+|+..|.
T Consensus 84 ~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~ 130 (222)
T 1zak_A 84 ENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRR 130 (222)
T ss_dssp HTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred CCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 346778999998877766643 23458999999999999999998774
No 21
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.77 E-value=2.1e-17 Score=119.83 Aligned_cols=133 Identities=16% Similarity=0.231 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC----ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG----SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 97 (182)
++|+|+|+|||||||+++.| +.+|+.+++.+++++...... ............. .+.......+...+....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 77 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN 77 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence 58999999999999999999 999999999999988876532 1222222222221 112233444455553345
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHH
Q 030176 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFI 162 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~ 162 (182)
+..+|+||+ ....++..+..... .++++|||++|.+++.+|+.+| ++..+..+.+++....
T Consensus 78 ~~~vi~dg~-~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~r~ 138 (179)
T 3lw7_A 78 HDLVVFDGV-RSLAEVEEFKRLLG-DSVYIVAVHSPPKIRYKRMIER--LRSDDSKEISELIRRD 138 (179)
T ss_dssp CSCEEEECC-CCHHHHHHHHHHHC-SCEEEEEEECCHHHHHHHHHTC--C----CCCHHHHHHHH
T ss_pred CCeEEEeCC-CCHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhc--cCCCCcchHHHHHHHH
Confidence 678999998 88888888877765 5789999999999999999998 4444455666665544
No 22
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.71 E-value=1e-15 Score=117.84 Aligned_cols=124 Identities=35% Similarity=0.645 Sum_probs=97.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 99 (182)
++.+|+|+|+|||||||+++.|++.+|+..++.|++++.........+..++.....+...++..+.+.+...+....+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999998876655566666666667777778777777766655433345
Q ss_pred cEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 100 ~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
++++++++....+...+... ..++++|+|++|.+.+.+|+..|.
T Consensus 106 ~~il~g~~~~~~~~~~l~~~--~~~~~vi~L~~~~~~~l~r~~~r~ 149 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKI--CEVDLVISLNIPFETLKDRLSRRW 149 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTT--CCCCEEEEEECCHHHHHHHHHTEE
T ss_pred eEEEECCCCCHHHHHHHHhh--cCCCEEEEEECCHHHHHHHHHcCC
Confidence 67899998876554444322 347899999999999999998764
No 23
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.62 E-value=9.1e-15 Score=107.85 Aligned_cols=122 Identities=12% Similarity=0.160 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 98 (182)
+++.+|+|+|+|||||||+++.|++.+|+.+++.|++...........+......... ...+...+.+...+. .+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~g 77 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--SG 77 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--TT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--CC
Confidence 4678999999999999999999999999999998776543322100000000000000 000111112222222 35
Q ss_pred CcEEEeCCCCCHHHHHHH---HHHhCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 99 DKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l---~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
..+|+|+++........+ ... ...++++|||++|.+++.+|+.+|..
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~-~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTI-APFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHH-SCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 678899876322222222 222 33577899999999999999998853
No 24
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=9.1e-15 Score=109.03 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=71.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (182)
++.+.++.+|+|+|++||||||+++.|++.+|+.+++.++++...... .....+++. +.....+....++....
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~--~i~~~~~~~---~~~~~~~~e~~~l~~l~- 92 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHK--TVGELFTER---GEAGFRELERNMLHEVA- 92 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--CHHHHHHHH---HHHHHHHHHHHHHHHHT-
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCC--cHHHHHHhc---ChHHHHHHHHHHHHHHh-
Confidence 455677889999999999999999999999999999999987765432 222222111 11111122222333322
Q ss_pred hcCCCcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176 95 ESGNDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 95 ~~~~~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~ 142 (182)
....+|++ +.+.....+..+.. ++.+|||++|.+++.+|+.
T Consensus 93 --~~~~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 93 --EFENVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLR 136 (199)
T ss_dssp --TCSSEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHH
T ss_pred --hcCCcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHh
Confidence 23455666 33333333333332 4689999999999999998
No 25
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.61 E-value=3.1e-14 Score=106.14 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH---HHHHHHHHHhc
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES 96 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~ 96 (182)
.+++|+|+|++||||||+++.|++.+|+.+++.+++....... ....+..+.+... ...+.+.+ .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~l~~~~--~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIR----------KMSEGIPLTDDDRWPWLAAIGERL--A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHH----------HHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHH----------HHhcCCCCCchhhHHHHHHHHHHH--h
Confidence 3568999999999999999999999999999988774321110 1112333333222 22233333 3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+..+|+|+.......+..+.... ..++.+|+|++|.+++.+|+.+|.
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~ 132 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRESA-PGGLAFVFLHGSESVLAERMHHRT 132 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHHTS-TTCCEEEEEECCHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCHHHHHHHHHhc-CCCeEEEEEeCCHHHHHHHHHHhh
Confidence 356778898766677766665544 346789999999999999999985
No 26
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.60 E-value=1.4e-14 Score=105.67 Aligned_cols=117 Identities=20% Similarity=0.274 Sum_probs=76.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH-HhCCcEecHHHHHHHHHHcC-Ch----hhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSG-SE----NGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~-~lg~~~~~~~di~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (182)
+.+|+|+|+|||||||+++.|++ .+++.+++.+.+ +...... .. ....... ...+...+.+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~-r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH-HHHhhCCCccchhhhchhhhh-------HHHHHHHHHHHHHHh
Confidence 57899999999999999999998 689999998554 4333221 10 1000000 011223344444442
Q ss_pred h-cCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHhhh
Q 030176 95 E-SGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 95 ~-~~~~~~ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
. ..+..+|+|+++....++..+..... ..+..+|||++|.+++.+|+.+|.
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 2 34678999998887776666654321 123478899999999999999885
No 27
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.53 E-value=7.5e-13 Score=101.00 Aligned_cols=146 Identities=18% Similarity=0.273 Sum_probs=84.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHH-HHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL-LQKAME 94 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~ 94 (182)
+.++.+|+|.|++||||||+++.|++.++ +.++... .......+..+++++..+.........-+ ......
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999986 3443321 12234456666666655543333221111 111110
Q ss_pred -------h--cCCCcEEEe----------CCCCC--HHHHHHHHHH--hCCCCcEEEEEecCHHHHHHHHHhhhccCCCC
Q 030176 95 -------E--SGNDKFLID----------GFPRN--EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQVRQKL 151 (182)
Q Consensus 95 -------~--~~~~~~ild----------g~~~~--~~q~~~l~~~--~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~ 151 (182)
. ..+..+|+| ++++. .....++... ....||++|+|++|++++.+|+.+|.......
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~ 176 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRL 176 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccch
Confidence 0 135678899 76544 3333344332 23479999999999999999999984221111
Q ss_pred CcchHHHHHHHHHhhhhh
Q 030176 152 PFSWGVFCLFIMLSFSSC 169 (182)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (182)
......|..-++..+...
T Consensus 177 e~~~~~~~~rv~~~y~~l 194 (229)
T 4eaq_A 177 DQEDLKFHEKVIEGYQEI 194 (229)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 123455666565555443
No 28
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.52 E-value=5.3e-13 Score=98.24 Aligned_cols=117 Identities=19% Similarity=0.354 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQK 91 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~ 91 (182)
++|+|+|++||||||+++.|++.+ |+.+++.++ ......+..+.+.+..+...+.... .+.+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999998 888887642 1122234444444444432222111 111111
Q ss_pred HHHh--cCCCcEEEe----------CCCC--CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 92 AMEE--SGNDKFLID----------GFPR--NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 92 ~l~~--~~~~~~ild----------g~~~--~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
.+.. ..+..+++| |++. ...+...+.... +..||++|||++|.+++.+|+.+|
T Consensus 75 ~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 143 (195)
T 2pbr_A 75 KIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK 143 (195)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT
T ss_pred HHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc
Confidence 1111 234567777 4333 233333333222 236899999999999999999865
No 29
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.50 E-value=4.2e-13 Score=96.96 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
++|+|+|++||||||+++.|++.+|+.+++.+.+..... .... ..+... .+ ..+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~~----------------~~~~~~-~l--~~~~~v 58 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GNEK----------------LFEHFN-KL--ADEDNV 58 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CHHH----------------HHHHHH-HH--TTCCSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HHHH----------------HHHHHH-HH--HhCCCe
Confidence 479999999999999999999999999998876644322 0000 001111 11 123344
Q ss_pred EEeCC--------------C-CCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 102 LIDGF--------------P-RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 102 ildg~--------------~-~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+.|.+ . ........+.... ..|+++|||++|.+++.+|+.+|
T Consensus 59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~i~l~~~~e~~~~R~~~r 115 (173)
T 3kb2_A 59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKI-KAKAKVVYLHADPSVIKKRLRVR 115 (173)
T ss_dssp EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHH-TTTEEEEEEECCHHHHHHHHHHH
T ss_pred EEeeeecchHHHHHHHHHhhHhhHHHHHHHhccC-CCCCEEEEEeCCHHHHHHHHHhc
Confidence 55532 1 1233333443333 35889999999999999999988
No 30
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.49 E-value=3.7e-13 Score=100.33 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=70.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH---HHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---KLLQK 91 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 91 (182)
.+...++.+|+|+|++||||||+++.|++.+|..+++.+++....... ....+..+.+.... ..+..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIA----------TMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHH----------HHHTTCCCCHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHH----------HHhcCCCCCCcccccHHHHHHH
Confidence 334467889999999999999999999999999999987763221100 01112222221111 11111
Q ss_pred HHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 92 AMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 92 ~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+.. ..+..+|++........+..+.... .+..+|||++|.+++.+|+.+|.
T Consensus 93 ~~~~~~~~g~~viid~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~l~~Rl~~R~ 146 (200)
T 4eun_A 93 WMDARADAGVSTIITCSALKRTYRDVLREGP--PSVDFLHLDGPAEVIKGRMSKRE 146 (200)
T ss_dssp HHHHHHHTTCCEEEEECCCCHHHHHHHTTSS--SCCEEEEEECCHHHHHHHHTTCS
T ss_pred HHHHHHhcCCCEEEEchhhhHHHHHHHHHhC--CceEEEEEeCCHHHHHHHHHhcc
Confidence 1111 1234566776444455554443322 24578999999999999998874
No 31
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.49 E-value=7.5e-13 Score=104.30 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=75.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGN 98 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~ 98 (182)
+.+|+|+|+|||||||+++.|++++ |+.+++.|++ +........ +.. ..+...+.....+...+.+...+.. ..+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~-r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH-HHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 4789999999999999999999985 8999999854 443322100 000 0000000000011222333333311 346
Q ss_pred CcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 99 DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 99 ~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+|+|+.+....++..+.... ...+..+|||++|.+++.+|+.+|.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 7899999888877666665432 1124479999999999999999985
No 32
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.49 E-value=3.8e-13 Score=98.79 Aligned_cols=117 Identities=16% Similarity=0.238 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH---HHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EVTIKLLQK 91 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 91 (182)
++.+|+|+|+|||||||+++.|++.++ +.+++.++++++........ ....+ .. .... ......+.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~ 76 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQ---MR-KMDPETQKRIQKMAGR 76 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGG---GS-SCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHH---Hh-cCCHHHHHHHHHHHHH
Confidence 357899999999999999999999998 99999999887764321100 00000 00 1111 111112212
Q ss_pred HHHh-cCCCcEEEeCCCCC--HHHH-----HHHHHHhCCCCcEEEEEecCHHHHHH-HHHh
Q 030176 92 AMEE-SGNDKFLIDGFPRN--EENR-----AAFEAVTKIEPEFVLFFDCSEEEMER-RILN 143 (182)
Q Consensus 92 ~l~~-~~~~~~ildg~~~~--~~q~-----~~l~~~~~~~~~~vI~ld~~~~~l~~-R~~~ 143 (182)
.+.. .....+|+|+++.. .... ..+.... .|+++|||++|.+++.+ |+.+
T Consensus 77 ~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 77 KIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp HHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTS
T ss_pred HHHhhccCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhh
Confidence 2211 12356889986431 1000 0111112 37899999999999996 8876
No 33
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.48 E-value=5.3e-13 Score=98.08 Aligned_cols=114 Identities=17% Similarity=0.232 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHH-cCChhhHHHHHHHHcCCCCCH--HHHHHH----H
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIKL----L 89 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~----l 89 (182)
++|+|+|+|||||||+++.|++.++ +.+++.++++.+... .....+. .+ .....+. ...... +
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR--DE---MRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH--HH---HTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch--hh---hhcCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999998 788888888876653 2111110 00 0111111 111111 1
Q ss_pred HHHHHhcCCCcEEEeCCCCCHHH--------HHHHHHHhCCCCcEEEEEecCHHHHHHH-HHh
Q 030176 90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN 143 (182)
Q Consensus 90 ~~~l~~~~~~~~ildg~~~~~~q--------~~~l~~~~~~~~~~vI~ld~~~~~l~~R-~~~ 143 (182)
...+....+..+|+|+++....+ ...+.. . .|+++|||++|.+++.+| +..
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~l~~~~~~~~~rr~~~ 136 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I--NPSVIFLLEADPKIILSRQKRD 136 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHHC
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c--CCCEEEEEeCCHHHHHHHHHhh
Confidence 22221134567889986431111 122222 2 378999999999998866 666
No 34
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.48 E-value=1.9e-13 Score=100.62 Aligned_cols=115 Identities=20% Similarity=0.338 Sum_probs=73.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH-hCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCC---CHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQ 90 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~-lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ 90 (182)
++.++++.+|+|+|+|||||||+++.|++. +|+.+++.|+++++.. .....+..+ . .... +++...+.+.
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~-~~~~~~~~~----~-~~~~~r~~~~~~~~~l~ 77 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-FYTEYDTEL----D-THIIEEKDEDRLLDFME 77 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-CSCC-----------CCCCCHHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh-hhhhHHHHh----h-hcccCCCCHHHHHHHHH
Confidence 345567789999999999999999999999 7999999999988741 111111111 0 1112 2333344444
Q ss_pred HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+.. ..+++++..... .+.. ..++.+|||++|.+++.+|+.+|.
T Consensus 78 ~~~~~--~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 78 PIMVS--RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp HHHTS--SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred HHHhc--cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhCC
Confidence 44322 345677764321 1111 125789999999999999999884
No 35
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.47 E-value=2.9e-13 Score=99.29 Aligned_cols=111 Identities=20% Similarity=0.257 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
++|+|+|+|||||||+++.|++.+|+.+++.|++.+...+. .....+. ..+.....+.....+...+.. ...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--~~~v 75 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--SIADIFA---TDGEQEFRRIEEDVVRAALAD--HDGV 75 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--CHHHHHH---HHCHHHHHHHHHHHHHHHHHH--CCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--CHHHHHH---HhChHHHHHHHHHHHHHHHhc--CCeE
Confidence 56999999999999999999999999999999988766432 1111111 112111122222334443332 2234
Q ss_pred EEeCC--CCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 102 LIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 102 ildg~--~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+..|. ......+..+ . .+.+|||++|.+++.+|+.+|.
T Consensus 76 i~~g~~~v~~~~~~~~l----~--~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 76 LSLGGGAVTSPGVRAAL----A--GHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp EECCTTGGGSHHHHHHH----T--TSCEEEEECCHHHHHHHTTCCC
T ss_pred EecCCcEEcCHHHHHHH----c--CCeEEEEeCCHHHHHHHHhCCC
Confidence 34442 1222233222 1 4578999999999999999874
No 36
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.46 E-value=3.2e-12 Score=92.97 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=68.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCH-------HHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLLQK 91 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~ 91 (182)
.++.+|+|+|++||||||+++.|++.+|..+++.+++...... .. ...+..+.+ ......+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~---------~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 75 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI---------EK-MASGEPLNDDDRKPWLQALNDAAFA 75 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH---------HH-HHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHH---------HH-hhcCcCCCccccccHHHHHHHHHHH
Confidence 4578999999999999999999999999999998876422100 00 001111111 111122222
Q ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEEecCHHHHHHHHHhhh
Q 030176 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 92 ~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+.. +..+|+|.-......+..+.. . .++ .+|||++|.+++.+|+.+|.
T Consensus 76 ~~~~--~~~~vi~~~~~~~~~~~~l~~-~--~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 76 MQRT--NKVSLIVCSALKKHYRDLLRE-G--NPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp HHHH--CSEEEEECCCCSHHHHHHHHT-T--CTTEEEEEEECCHHHHHHHHHTST
T ss_pred HHhc--CCcEEEEeCchHHHHHHHHHh-c--CCCEEEEEEECCHHHHHHHHHhcc
Confidence 2222 346677742233344434432 2 234 79999999999999999884
No 37
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.45 E-value=8e-13 Score=95.74 Aligned_cols=109 Identities=18% Similarity=0.260 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcE
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (182)
++|+|+|++||||||+++.|++.+|+.+++.|+++....+ ......+.. .+.....+....++.. +. . ..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g--~~~~~~~~~---~~~~~~~~~~~~~~~~-l~--~-~~~ 73 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG--MTVADVVAA---EGWPGFRRRESEALQA-VA--T-PNR 73 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC--SCHHHHHHH---HHHHHHHHHHHHHHHH-HC--C-SSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC--CCHHHHHHH---cCHHHHHHHHHHHHHH-hh--c-CCe
Confidence 4799999999999999999999999999999998776522 112111111 0100011111122222 21 2 234
Q ss_pred EEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH--hh
Q 030176 102 LID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NR 144 (182)
Q Consensus 102 ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~--~R 144 (182)
|++ + .+.....+..+.. ++++|||++|.+++.+|+. +|
T Consensus 74 vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 74 VVATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp EEECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHC
T ss_pred EEECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccC
Confidence 454 4 2223334433332 4689999999999999998 76
No 38
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.44 E-value=1.8e-12 Score=93.48 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDK 100 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 100 (182)
++|+|+|++||||||+++.|++.+|+.+++.|++....... .. .+.... +.....+....++. .+.. ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~--~~----~~~~~~~~~~~~~~~~~~~l~-~l~~--~~~ 71 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGL--SI----PQIFEKKGEAYFRKLEFEVLK-DLSE--KEN 71 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--CH----HHHHHHSCHHHHHHHHHHHHH-HHTT--SSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCC--CH----HHHHHHhChHHHHHHHHHHHH-HHhc--cCC
Confidence 36999999999999999999999999999999998765421 11 111111 11000111122222 2221 234
Q ss_pred EEEe-C--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 101 FLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 101 ~ild-g--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+|++ + .+.....+..+. .++++|||++|.+++.+|+.+|.
T Consensus 72 ~Vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 72 VVISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp EEEECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT
T ss_pred eEEECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC
Confidence 4554 3 222333333332 26799999999999999998764
No 39
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.44 E-value=2.2e-13 Score=105.71 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH---hCCcEe--cHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~---lg~~~~--~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (182)
++.+|+|+|+|||||||+++.|++. +|+.++ +.|++.... ..-...+.. .........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l-~~~~~~~e~----------~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF-PVWKEKYEE----------FIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS-SSCCGGGHH----------HHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH-hhhhHHHHH----------HHHHHHHHHHHHHhh
Confidence 4679999999999999999999988 687776 665543211 110000000 001112233333332
Q ss_pred hcCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 95 ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 95 ~~~~~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
. ..+|+|+.+.....+..+.... ...++++|||++|.+++.+|+.+|.
T Consensus 72 --~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 72 --N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp --T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred --C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 2 6788998666655555554332 2346889999999999999999884
No 40
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.44 E-value=2.9e-12 Score=93.92 Aligned_cols=109 Identities=14% Similarity=0.207 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 100 (182)
++.|+|+|++||||||+++.|++.+|+.+++.|+++.+..+.. ....+... +.....+...+.+...... ...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~--~~~~~~~~---g~~~~~~~~~~~~~~~~~~--~~~ 77 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGAD--IAWIFEME---GEAGFRRREREMIEALCKL--DNI 77 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSC--HHHHHHHH---HHHHHHHHHHHHHHHHHHS--SSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCC--hhhHHHHh---CHHHHHHHHHHHHHHHHhc--CCc
Confidence 5689999999999999999999999999999999877654321 11111111 1111112233334443322 233
Q ss_pred EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 101 ~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
++..| .......+..+... .++|||++|.+++.+|+
T Consensus 78 vi~~gg~~~~~~~~~~~l~~~-----~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 78 ILATGGGVVLDEKNRQQISET-----GVVIYLTASIDTQLKRI 115 (185)
T ss_dssp EEECCTTGGGSHHHHHHHHHH-----EEEEEEECCHHHHHHHH
T ss_pred EEecCCceecCHHHHHHHHhC-----CcEEEEECCHHHHHHHH
Confidence 44443 33344444444332 37899999999999999
No 41
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.44 E-value=1.8e-12 Score=106.97 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (182)
....+.+|+|+|+|||||||+++.|++.+++.+++.|++- ........+...+..
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------------~~~~~~~~~~~~l~~- 308 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------------------SWQRCVSSCQAALRQ- 308 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------------------SHHHHHHHHHHHHHT-
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------------------HHHHHHHHHHHHHhc-
Confidence 4466789999999999999999999999999999987750 011223333444433
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
+..+|+|+......++..+... .+. +..+|||++|.+++++|+.+|..
T Consensus 309 -g~~vIiD~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 -GKRVVIDNTNPDVPSRARYIQCAKDAGV-PCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp -TCCEEEESCCCSHHHHHHHHHHHHHHTC-CEEEEEECCCHHHHHHHHHHHHH
T ss_pred -CCcEEEeCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCCHHHHHHHHHhhcc
Confidence 5678899987776666655443 332 44688899999999999999964
No 42
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.44 E-value=5.1e-12 Score=93.27 Aligned_cols=116 Identities=21% Similarity=0.347 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH-------HHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI-------KLLQK 91 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~ 91 (182)
++|+|+|++||||||+++.|++.+ |+.++...+ ......+..+.+.+..+...+..... ..+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999 988775422 12233445555554433333221111 11122
Q ss_pred HHHh--cCCCcEEEeCC----------CC--CHHHHHHHHHH--hCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 92 AMEE--SGNDKFLIDGF----------PR--NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 92 ~l~~--~~~~~~ildg~----------~~--~~~q~~~l~~~--~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+.. ..+..++.|.+ +. .......+... ....||++|+|++|.+++.+|+.+|
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 142 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL 142 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc
Confidence 221 23456777843 22 22222222221 1235899999999999999999988
No 43
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.44 E-value=2e-13 Score=99.85 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=72.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 97 (182)
+.++.+|+|+|+|||||||+++.|++.+|+.+++.++++.+.... ...+.. ........+.+.+.+...+..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-- 79 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE-- 79 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH--
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc--
Confidence 456678999999999999999999999999999999987766111 000000 000112334445555555444
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 98 ~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+++++...... +.. ..++.+|||++|.+++.+|+.+|.
T Consensus 80 -g~~vv~~~~~~~-----~~~---~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 -GGVIVDYHGCDF-----FPE---RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp -CCEEEECSCCTT-----SCG---GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred -CCEEEEechhhh-----cch---hcCCEEEEEECCHHHHHHHHHHcC
Confidence 245676543211 000 016799999999999999999884
No 44
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.43 E-value=3.9e-12 Score=92.60 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=68.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcC--ChhhHHHHHHHHcCC-CCCH---HH---HHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSG--SENGTMIQNMIKEGK-IVPS---EV---TIKL 88 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~--~~~di~~~~~~~~--~~~~~~~~~~~~~~~-~~~~---~~---~~~~ 88 (182)
.+.+|+|+|+|||||||+++.|++.++..++ +.|++........ ...+..+.+ .+. .... .. ....
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA---DGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECT---TSCEEECHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccC---CCccccchhHHHHHHHHHHH
Confidence 4578999999999999999999999986554 4666544221110 000000000 000 0011 11 1112
Q ss_pred HHHHHHhcCCCcEEEeCCCC-CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 89 LQKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 89 l~~~l~~~~~~~~ildg~~~-~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+...+. .+..+|+++... ....+..+.+.+...+.++|||++|.+++.+|+.+|.
T Consensus 79 ~~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 79 VVAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence 232222 245678888542 3333334444443334468889999999999999874
No 45
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.43 E-value=1.9e-12 Score=96.59 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~ 59 (182)
.+|+|+|++||||||+++.|++ +|+.+++.|++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~ 39 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREV 39 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHH
Confidence 5799999999999999999987 999999999987654
No 46
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.43 E-value=5e-13 Score=96.69 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDK 100 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 100 (182)
.+|+|+|++||||||+++.|++.+|+.+++.|++.....+. .. .+.+.. +.....+...+.+..... ....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~--~~----~~~~~~~g~~~~~~~~~~~l~~~~~--~~~~ 79 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGL--SV----REIFEELGEDNFRMFEKNLIDELKT--LKTP 79 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--CH----HHHHHHTCHHHHHHHHHHHHHHHHT--CSSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCC--CH----HHHHHHhCHHHHHHHHHHHHHHHHh--cCCC
Confidence 57999999999999999999999999999999988775432 11 122211 211111222233333332 1223
Q ss_pred -EEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 101 -FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 101 -~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
++..+ ++.. .. + ..++.+|||++|.+++.+|+.+|
T Consensus 80 ~Vi~~g~g~~~~-~~-------l-~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 80 HVISTGGGIVMH-EN-------L-KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp CEEECCGGGGGC-GG-------G-TTSEEEEEEECCHHHHHHHHCC-
T ss_pred EEEECCCCEech-hH-------H-hcCCEEEEEECCHHHHHHHHhcc
Confidence 33322 2222 11 2 24689999999999999999877
No 47
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.42 E-value=8.9e-12 Score=93.71 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChh-hHHHHHH----HHcCCCCCHHHH-----------
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN-GTMIQNM----IKEGKIVPSEVT----------- 85 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~----------- 85 (182)
--|+|||.+||||||+++.|++ +|+++++.|.+.++....+... ......+ +.....++...+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 3589999999999999999977 9999999999988877654322 2222211 111112222211
Q ss_pred -------HHHHH----HHHHhcCCCcEEEeCCCCCH-HHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhhccCCCCCc
Q 030176 86 -------IKLLQ----KAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQVRQKLPF 153 (182)
Q Consensus 86 -------~~~l~----~~l~~~~~~~~ildg~~~~~-~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~ 153 (182)
..++. +.+.......+++|.--... .....+ .|.+|++++|.++.++|+.+|+ ..
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~-------~D~vi~V~ap~e~r~~Rl~~Rd------g~ 155 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKAR-------CDRVLVVDCPVDTQIARVMQRN------GF 155 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHH-------CSEEEEEECCHHHHHHHHHHHH------CC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCcccc-------CCeEEEEECCHHHHHHHHHhcC------CC
Confidence 11111 22222233456677521111 122122 6899999999999999999984 35
Q ss_pred chHHHHHHH
Q 030176 154 SWGVFCLFI 162 (182)
Q Consensus 154 ~~~~~~~~~ 162 (182)
+.+++...+
T Consensus 156 s~eea~~ri 164 (210)
T 4i1u_A 156 TREQVEAII 164 (210)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666666665
No 48
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.42 E-value=1.6e-12 Score=98.26 Aligned_cols=40 Identities=30% Similarity=0.577 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
+.+|+|+|++||||||+++.|++.+|+.+++.|++++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA 44 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence 4689999999999999999999999999999999998654
No 49
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.42 E-value=3.7e-12 Score=93.05 Aligned_cols=114 Identities=10% Similarity=0.128 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe-cHHHHHHHHHHcCChhhHHHHHHHHcCCC----CC--HHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SAGDLLRAEIKSGSENGTMIQNMIKEGKI----VP--SEVTIKLLQK 91 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~-~~~di~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~l~~ 91 (182)
+++++|+|+|+|||||||+++.|++.+++.++ +.+.+ .. .+.+....+.. .. .+...+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-g~----------~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 71 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-GQ----------ALRKLTPGFSGDPQEHPMWIPLMLDALQY 71 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-HH----------HHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-HH----------HHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence 45789999999999999999999999998887 43111 11 11111111110 01 1223444444
Q ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHH---hCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 92 AMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 92 ~l~~~~~~~~ildg~~~~~~q~~~l~~~---~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+.. .+..+|+|+..........+... .+..+ ..|||++|.+++.+|+.+|.
T Consensus 72 ~l~~-~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 72 ASRE-AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp HHHH-CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC-
T ss_pred HHHh-CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhcc
Confidence 4433 24567778655544333333222 22222 56889999999999999874
No 50
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.42 E-value=5.5e-12 Score=94.67 Aligned_cols=138 Identities=17% Similarity=0.283 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH------------
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI------------ 86 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 86 (182)
+.+|+|.|+.||||||+++.|++.| |+.++...+ ......+..+.+++..+...+.....
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988 444332210 12344555566666555555432211
Q ss_pred HHHHHHHHhcCCCcEEEeCCCC------------CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhccCCCCC
Q 030176 87 KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQVRQKLP 152 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~------------~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~ 152 (182)
+.+...+ ..+..+|.|.|.. .......+.... ...||++||||+|++++.+|+.+|. +..+.
T Consensus 76 ~~i~p~l--~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~--~~~dr 151 (205)
T 4hlc_A 76 LKVIPAL--KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNS--RDQNR 151 (205)
T ss_dssp HTHHHHH--HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---------
T ss_pred HHHHHHH--HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcC--Ccccc
Confidence 1111222 2366777886531 123333333322 3469999999999999999999884 32222
Q ss_pred c--chHHHHHHHHHhhhh
Q 030176 153 F--SWGVFCLFIMLSFSS 168 (182)
Q Consensus 153 ~--~~~~~~~~~~~~~~~ 168 (182)
. ....|.+-++..|..
T Consensus 152 ~e~~~~~f~~~v~~~Y~~ 169 (205)
T 4hlc_A 152 LDQEDLKFHEKVIEGYQE 169 (205)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH
Confidence 2 233455555555443
No 51
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.41 E-value=2.1e-12 Score=99.82 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=76.4
Q ss_pred hcCCCC---CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHH
Q 030176 15 TVTVKK---PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK 91 (182)
Q Consensus 15 ~~~~~~---~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (182)
++.+.+ +.+|+|+|++||||||+++.|++.+|+.+++.++++..... +......++. .+.....+...+.+.+
T Consensus 39 ~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i~~i~~~---~ge~~fr~~e~~~l~~ 114 (250)
T 3nwj_A 39 AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSVAEIFEH---FGESVFREKETEALKK 114 (250)
T ss_dssp HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCHHHHHHH---HCHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccHHHHHHH---hCcHHHHHHHHHHHHH
Confidence 444555 88999999999999999999999999999999998876651 1222222221 1222222333334444
Q ss_pred HHHhcCCCcEEEeC--CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhh
Q 030176 92 AMEESGNDKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 92 ~l~~~~~~~~ildg--~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
..... ...+|.+| .+.....+..+. .+++|||++|.+++.+|+.+|
T Consensus 115 l~~~~-~~~Via~GgG~v~~~~~~~~l~------~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 115 LSLMY-HQVVVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp HHHHC-SSEEEECCGGGGGSHHHHHHHT------TSEEEEEECCHHHHHHHHHC-
T ss_pred HHhhc-CCcEEecCCCeecCHHHHHHHh------CCcEEEEECCHHHHHHHHhhc
Confidence 44331 23444443 444444444442 268999999999999999863
No 52
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.41 E-value=6e-12 Score=98.76 Aligned_cols=120 Identities=19% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-----CCCCCHH---------
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSE--------- 83 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------- 83 (182)
+..+.+|+|+|++||||||+++.|+ .+|+.+++.|++.++....+......+.+.... ...+...
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3456799999999999999999998 699999999999776544332211111111000 0001110
Q ss_pred ---------HH----HHHHHHHHH---hcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 84 ---------VT----IKLLQKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 84 ---------~~----~~~l~~~l~---~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.. ...+.+.+. ......+|+|+....... +...+|.+||+++|.+++++|+.+|.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~-------~~~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG-------WQSMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT-------GGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc-------hHHhCCEEEEEcCCHHHHHHHHHHcC
Confidence 00 001111111 122457889985322111 11236899999999999999999884
No 53
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.39 E-value=9.5e-13 Score=98.06 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
.+|+|+|++||||||+++.|++ +|+.+++.|+++++..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~ 39 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFY 39 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHh
Confidence 4799999999999999999999 9999999999877644
No 54
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.39 E-value=5.1e-12 Score=95.12 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=35.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
++.+|+|+|++||||||+++.|++ +|+.+++.|++.+...
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~ 42 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVV 42 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHh
Confidence 467999999999999999999988 9999999998877654
No 55
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.38 E-value=1.4e-11 Score=93.03 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCC--CCCHHHH--------
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSEVT-------- 85 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------- 85 (182)
+++.+|+|.|++||||||+++.|++.+. +.++...+ ......|..+++++..+. .+.....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R 77 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR 77 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998874 44433211 124455666777766653 2332111
Q ss_pred HHHHHHHHHh--cCCCcEEEeCCCC------------CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhccCC
Q 030176 86 IKLLQKAMEE--SGNDKFLIDGFPR------------NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQVRQ 149 (182)
Q Consensus 86 ~~~l~~~l~~--~~~~~~ildg~~~------------~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~r~ 149 (182)
.+.+.+.+.. ..+..+|.|.|.. .......+.... ...||++||||+|++++.+|+.+|.. ..
T Consensus 78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~-~d 156 (213)
T 4edh_A 78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR-LD 156 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS-CC
T ss_pred HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC-cC
Confidence 0111111111 2467788886521 123333333322 45799999999999999999998841 11
Q ss_pred CCCcchHHHHHHHHHhhh
Q 030176 150 KLPFSWGVFCLFIMLSFS 167 (182)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~ 167 (182)
.......+|.+-++..|.
T Consensus 157 r~E~~~~~~~~rv~~~y~ 174 (213)
T 4edh_A 157 RFEQEDRRFFEAVRQTYL 174 (213)
T ss_dssp TTTTSCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 111112355555555544
No 56
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.38 E-value=2.4e-11 Score=90.38 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
+|+|+|++||||||+++.|++.+|+.+++.|++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~ 41 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA 41 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence 89999999999999999999999999999999987654
No 57
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.38 E-value=1.5e-13 Score=102.73 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=69.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHH-----------
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK----------- 87 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 87 (182)
.++.+|+|+|++||||||+++.|++.++...++. ++++.. ..+...+..+.+++..+...+......
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999887544333 111100 011222333333333333333322111
Q ss_pred HHHHHHHhcCCCcEEEeCCCCCH---HH------HHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 88 LLQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 88 ~l~~~l~~~~~~~~ildg~~~~~---~q------~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
.+...+. .+..+|+|+++... .. ...+.... ...|+++|||++|.+++.+|+.+|
T Consensus 86 ~i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 151 (212)
T 2wwf_A 86 EIKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG 151 (212)
T ss_dssp HHHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred HHHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence 1222222 24678899876431 11 11221111 135899999999999999998754
No 58
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.37 E-value=1.6e-12 Score=99.00 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=80.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH----
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---- 86 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l-------g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 86 (182)
+.++.+|+|.|++||||||+++.|++.+ |+.++.. ++ ......|..+++++..+...+.....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a 95 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFA 95 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4578999999999999999999999888 4433321 11 12345566677776666332222111
Q ss_pred ---HHHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhcc
Q 030176 87 ---KLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQV 147 (182)
Q Consensus 87 ---~~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~ 147 (182)
+.+.+.+.. ..+..+|.|.|..+ ......+.... ...||++||||+|++++.+|+.+|..
T Consensus 96 ~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~- 174 (227)
T 3v9p_A 96 GRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM- 174 (227)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-
Confidence 111111111 24677888975321 23333333322 45799999999999999999998841
Q ss_pred CCCCCcchHHHHHHHHHhhhh
Q 030176 148 RQKLPFSWGVFCLFIMLSFSS 168 (182)
Q Consensus 148 r~~~~~~~~~~~~~~~~~~~~ 168 (182)
.........+|.+-++..|..
T Consensus 175 ~dr~E~~~~ef~~rv~~~Y~~ 195 (227)
T 3v9p_A 175 PDKFESESDAFFARTRAEYLR 195 (227)
T ss_dssp C---CCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHH
Confidence 111111134565556555543
No 59
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.36 E-value=4.5e-13 Score=103.37 Aligned_cols=113 Identities=25% Similarity=0.363 Sum_probs=71.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCc----------EecHHHHHHHHHHcCChhhHHHHHHHHcCC-------CCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEGK-------IVP 81 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~----------~~~~~di~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 81 (182)
.++.+|+|+|++||||||+++.|++.+|+. +++.|++++... .+. .. ....+. .+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~-----~~~-~~-~~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT-----SEQ-KA-KALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC-----HHH-HH-HHHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC-----hhh-hh-hhccCCCCCCCcchhh
Confidence 456799999999999999999999999987 788888865210 000 00 011111 122
Q ss_pred HHHHHHHHHHHHHh----------------------cCCCcEEEeCCCCC-HHHHHHHHHHhCCCCcEEEEEecCHHHHH
Q 030176 82 SEVTIKLLQKAMEE----------------------SGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEME 138 (182)
Q Consensus 82 ~~~~~~~l~~~l~~----------------------~~~~~~ildg~~~~-~~q~~~l~~~~~~~~~~vI~ld~~~~~l~ 138 (182)
.+...+.|...... .....+|+||.... ... +... +|++|||++|.++++
T Consensus 93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~---~~~~----~d~vi~l~~~~e~~~ 165 (252)
T 1uj2_A 93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQE---VRDL----FQMKLFVDTDADTRL 165 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHH---HHHH----CSEEEEEECCHHHHH
T ss_pred HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHH---HHHh----cCeeEEEeCCHHHHH
Confidence 22334444444311 13457889996442 222 2121 478999999999999
Q ss_pred HHHHhhh
Q 030176 139 RRILNRN 145 (182)
Q Consensus 139 ~R~~~R~ 145 (182)
+|+.+|.
T Consensus 166 ~R~~~R~ 172 (252)
T 1uj2_A 166 SRRVLRD 172 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 60
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.36 E-value=8.6e-12 Score=92.45 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
.++.+|+|+|++||||||+++.|++. |+.+++.|++++...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 45679999999999999999999988 999999999887655
No 61
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.35 E-value=8.9e-13 Score=96.06 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=65.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 102 (182)
+|+|+|+|||||||+++.|++.+|+.+++.|+++...... .....+. ..+.....+....++..+ .. ...++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~l-~~--~~~~v 77 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ--KVSEIFE---QKRENFFREQEQKMADFF-SS--CEKAC 77 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS--CHHHHHH---HHCHHHHHHHHHHHHHHH-TT--CCSEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCC--CHHHHHH---HcCHHHHHHHHHHHHHHH-Hc--cCCEE
Confidence 6999999999999999999999999999999987765322 1111111 111111112222233332 21 23444
Q ss_pred Ee-CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 103 ID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 103 ld-g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
++ |...... . .+. ..+.+|||++|.+.+.+|+.+|.
T Consensus 78 i~~g~~~~~~-~-~l~-----~~~~~i~l~~~~e~~~~R~~~r~ 114 (175)
T 1via_A 78 IATGGGFVNV-S-NLE-----KAGFCIYLKADFEYLKKRLDKDE 114 (175)
T ss_dssp EECCTTGGGS-T-TGG-----GGCEEEEEECCHHHHTTCCCGGG
T ss_pred EECCCCEehh-h-HHh-----cCCEEEEEeCCHHHHHHHHhccc
Confidence 55 4322111 1 121 23689999999999999998874
No 62
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.35 E-value=6.4e-12 Score=93.28 Aligned_cols=114 Identities=20% Similarity=0.330 Sum_probs=66.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH-----------
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI----------- 86 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 86 (182)
.++.+|+|+|++||||||+++.|++.+ |+.+++.+... .....+..+.+++..+..+......
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~ 76 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFA 76 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999998 57665532110 0122344444444433333322110
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCCHH--H------HHHHHHHh--CCCCcEEEEEecCHHHHHH
Q 030176 87 KLLQKAMEESGNDKFLIDGFPRNEE--N------RAAFEAVT--KIEPEFVLFFDCSEEEMER 139 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~~~~--q------~~~l~~~~--~~~~~~vI~ld~~~~~l~~ 139 (182)
+.+...+. .+..+|+|+++.... + ...+.... ...||++|||++|++++.+
T Consensus 77 ~~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 77 SFIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence 11122222 346788898764311 0 11122111 2358999999999998887
No 63
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.35 E-value=2.6e-11 Score=95.43 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=72.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCChhhHHHHHHHHcC----CCCCHHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLLQK 91 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l--g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~ 91 (182)
..+|.+|+|+|+|||||||+++.|++.+ ++.+++.|++. ..... .......+.... ...........+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R-~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~ 105 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK-QQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR 105 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH-TTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH-Hhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence 4567899999999999999999999998 77888875542 11100 000000000000 00111222334444
Q ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHhC-CC-CcEEEEEecCHHHH----HHHHHhhh
Q 030176 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTK-IE-PEFVLFFDCSEEEM----ERRILNRN 145 (182)
Q Consensus 92 ~l~~~~~~~~ildg~~~~~~q~~~l~~~~~-~~-~~~vI~ld~~~~~l----~~R~~~R~ 145 (182)
.+.. +..+|+|+......++..+...+. .. +..++++++|++.+ .+|+.+|.
T Consensus 106 ~l~~--g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 106 LSDQ--GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHH--TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHhc--CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4433 467889997777655544444331 11 22467899999999 78887664
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.35 E-value=2.3e-12 Score=93.35 Aligned_cols=113 Identities=15% Similarity=0.268 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 99 (182)
.+.+|+|+|++||||||+++.|++.++..+++.++++..... ...+..++.. +.....+....++.... . ..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~~---g~~~~~~~~~~~l~~l~-~--~~ 74 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDLE---GEEGFRDREEKVINELT-E--KQ 74 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHHHH-T--SS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHHH---hHHHHHHHHHHHHHHHH-h--CC
Confidence 356899999999999999999999999999999888765432 2222222210 00000111112233322 1 22
Q ss_pred cEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 100 ~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+++. +.+.....+..+.. .++++++++|.+.+.+|+.+|.
T Consensus 75 ~~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 75 GIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp SEEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC----
T ss_pred CeEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCC
Confidence 34443 23233333333322 2578999999999999999874
No 65
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.34 E-value=2.3e-12 Score=96.35 Aligned_cols=123 Identities=16% Similarity=0.238 Sum_probs=62.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH-----------
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI----------- 86 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 86 (182)
+.++.+|+|+|++||||||+++.|++.++...++... ++.. ......+..+.+++..+..++.....
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~ 83 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV 83 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999987533222100 0000 00112233333333333333332111
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCC-HH--------HHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhh
Q 030176 87 KLLQKAMEESGNDKFLIDGFPRN-EE--------NRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~~-~~--------q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
+.+...+. .+..+|+|.+... .. ....+.... ...|+++|||++|.+++.+|+.+|
T Consensus 84 ~~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 84 PLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 11222222 3467788853210 00 011222111 135899999999999999999643
No 66
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.33 E-value=2e-11 Score=94.23 Aligned_cols=41 Identities=32% Similarity=0.571 Sum_probs=37.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~ 59 (182)
.++.+|+|+|++||||||+++.|+++||+.+++.|.+++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 45689999999999999999999999999999999998654
No 67
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.32 E-value=6.2e-11 Score=89.41 Aligned_cols=141 Identities=14% Similarity=0.228 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCChhhHHHHHHHHcC-----CCCCHHH-H----
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV-T---- 85 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l---g~-~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~---- 85 (182)
++.+|+|.|++||||||+++.|++.+ |+ ..+.. + ...+...+..+++++... ..+.... .
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----R--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY 75 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----E--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----e--CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence 57899999999999999999999887 44 22211 0 012345666666666522 2233211 0
Q ss_pred ---HHHHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 86 ---IKLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 86 ---~~~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
.+.+.+.+.. ..+..+|.|.|..+ ......+.... ...||++||||+|++++.+|+.+|.
T Consensus 76 A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~- 154 (213)
T 4tmk_A 76 AARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG- 154 (213)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC-
Confidence 1111111111 24678888975221 22232333322 4579999999999999999999984
Q ss_pred cCCCC-CcchHHHHHHHHHhhhh
Q 030176 147 VRQKL-PFSWGVFCLFIMLSFSS 168 (182)
Q Consensus 147 ~r~~~-~~~~~~~~~~~~~~~~~ 168 (182)
+.+. ......|..-++..|..
T Consensus 155 -~~dr~E~~~~~f~~rv~~~y~~ 176 (213)
T 4tmk_A 155 -ELDRIEQESFDFFNRTRARYLE 176 (213)
T ss_dssp -SCCTTTTSCHHHHHHHHHHHHH
T ss_pred -CccchhhhHHHHHHHHHHHHHH
Confidence 2111 11134566666655543
No 68
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.32 E-value=1.7e-11 Score=94.65 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=71.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHc----CChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS----GSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (182)
...+|.+|+|+|+|||||||+++.|++.++ +.+++.+.+ +..... ....+....++... ...+....++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~ 103 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVT 103 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHH
Confidence 446678999999999999999999999987 455666544 221100 00011111111100 00122223333
Q ss_pred HHHHhcCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+. .+..+|+|+.+....+...+.+.+ +. +-.++++++|.+++.+|..+|.
T Consensus 104 ~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~-~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 104 KLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGY-EVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTC-EEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCC-cEEEEEEeCCHHHHHHHHHHHH
Confidence 3332 245788999877655544444433 22 2235678999999999999886
No 69
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.31 E-value=6.7e-12 Score=93.53 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=65.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCc--Eec----HHHHHHHHHHcCChhhHHHHHHHHcCC---CCCHHH---H--
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEV---T-- 85 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~----~~di~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~-- 85 (182)
++.+|+|+|+|||||||+++.|++.++.. ++. .++.+++... .+. ...... .
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~ 68 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK--------------EAKKKDLLTPLTFSLIHA 68 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH--------------HHTTTSCCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh--------------ccccccCCCHHHHHHHHH
Confidence 57899999999999999999999999863 332 1222222221 111 111110 0
Q ss_pred -------HHHHHHHHHhcCCCcEEEeCCCCCHHH--------HHHHHHH--hCCCCcEEEEEecCHHHHHHHHH-hhh
Q 030176 86 -------IKLLQKAMEESGNDKFLIDGFPRNEEN--------RAAFEAV--TKIEPEFVLFFDCSEEEMERRIL-NRN 145 (182)
Q Consensus 86 -------~~~l~~~l~~~~~~~~ildg~~~~~~q--------~~~l~~~--~~~~~~~vI~ld~~~~~l~~R~~-~R~ 145 (182)
.+.+...+ ..+..+|+|+++..... ...+... ....++++|+|++|.+++.+|+. +|.
T Consensus 69 ~~r~~~~~~~i~~~l--~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 69 TDFSDRYERYILPML--KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHHHHHHTHHHHH--HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH--hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 01111222 23567889987653211 0112221 12348999999999999999999 774
No 70
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.31 E-value=7.3e-12 Score=93.09 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~ 62 (182)
.-.+|+|+|++||||||+++.|++.+|+.+++.|++.++....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 3468999999999999999999999999999999998877664
No 71
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.30 E-value=7.2e-12 Score=95.96 Aligned_cols=144 Identities=13% Similarity=0.203 Sum_probs=77.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC---Cc-EecHHHHHHHHHHcCChhhHHHHHHHHcC---CCCCHHHH-----
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YT-HLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSEVT----- 85 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~-~~~~~di~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----- 85 (182)
.+++.+|+|.|++||||||+++.|++.++ +. .... ++ ..+...+..+++++..+ ..+.....
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~ 97 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT----RE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVY 97 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee----cC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHH
Confidence 35678999999999999999999998874 33 2211 11 12445566666666422 22332211
Q ss_pred ---HHHHHHHHHh--cCCCcEEEeCCCC------------CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhc
Q 030176 86 ---IKLLQKAMEE--SGNDKFLIDGFPR------------NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ 146 (182)
Q Consensus 86 ---~~~l~~~l~~--~~~~~~ildg~~~------------~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~ 146 (182)
.+.+.+.+.. ..+..+|.|.|.. .......+.... ...||++||||+|++++.+|+.+|..
T Consensus 98 A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~ 177 (236)
T 3lv8_A 98 AARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE 177 (236)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 1111111211 2467888886521 122233333322 35799999999999999999998842
Q ss_pred cCCCCCcchHHHHHHHHHhhhh
Q 030176 147 VRQKLPFSWGVFCLFIMLSFSS 168 (182)
Q Consensus 147 ~r~~~~~~~~~~~~~~~~~~~~ 168 (182)
. ........+|..-++..|..
T Consensus 178 ~-dr~E~~~~~~~~rv~~~y~~ 198 (236)
T 3lv8_A 178 L-DRIEKMDISFFERARERYLE 198 (236)
T ss_dssp C-CTTTTSCHHHHHHHHHHHHH
T ss_pred c-chhhhhHHHHHHHHHHHHHH
Confidence 1 11111124565556555533
No 72
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.29 E-value=4.1e-11 Score=87.95 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=66.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH---H
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---I 86 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 86 (182)
.....++.+|+|+|++||||||+++.|++.++ ..+++.+.+ +..... ...+..... .
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~--------------~~~~~~~~r~~~~ 71 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSE--------------GAGFTREERLRHL 71 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTT--------------TCCCCHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhh--------------ccCCChhhHHHHH
Confidence 33446789999999999999999999998875 234555444 322111 111111111 1
Q ss_pred HH---HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhC--CCCcEEEEEecCHHHHHHHHHh
Q 030176 87 KL---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 87 ~~---l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~--~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
.. +...+. ..+..++.|+.......+..+..... ..|+++|||++|.+++.+|+..
T Consensus 72 ~~~~~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 72 KRIAWIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp HHHHHHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred HHHHHHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 11 111112 23456667876544444444433321 1478999999999999999754
No 73
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.29 E-value=8e-11 Score=87.56 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=67.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCc--EecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH---H-
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---K- 87 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~--~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 87 (182)
...++.+|+|+|++||||||+++.|++.+ |.. +++.+++.... .. +..+..+... .
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~-~~--------------~~~~~~~~~~~~~~~ 85 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL-NR--------------DLSFKAEDRAENIRR 85 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT-TT--------------TCCSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh-hc--------------ccCcChHHHHHHHHH
Confidence 44678999999999999999999999988 655 77776553211 10 1111111111 1
Q ss_pred --HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHH
Q 030176 88 --LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 88 --~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~ 141 (182)
.+...+. ..+..++.+........+..+.........++|||++|.+++.+|+
T Consensus 86 ~~~~~~~~~-~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 86 VGEVAKLFA-DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHHHHHH-HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHHHHHHHH-hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 1112222 2345565655444556666665544433446799999999999997
No 74
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.28 E-value=1.8e-10 Score=87.86 Aligned_cols=44 Identities=32% Similarity=0.454 Sum_probs=38.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
+..++.+|+|+|++||||||+++.|++.+|+.+++.|++++...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~ 55 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT 55 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcce
Confidence 45778899999999999999999999999999999999988643
No 75
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.27 E-value=3.5e-11 Score=89.08 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~ 51 (182)
++|+|+|++||||||+++.|++.++..++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 369999999999999999999999986654
No 76
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.24 E-value=2.6e-10 Score=87.12 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~ 60 (182)
..+.+|+|+||+||||||+++.|++.+|+.+++.|.+++...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 456799999999999999999999999999999999987754
No 77
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.22 E-value=2.7e-11 Score=91.03 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~ 59 (182)
++.+|+|+|++||||||+++.|++.+|+.+++.|++++..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 3568999999999999999999999999999999998764
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.22 E-value=8.5e-11 Score=85.50 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=69.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHH----HHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI----KLLQ 90 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ 90 (182)
++.++++.+++|+|++||||||+++.+. .+...++.+ .++....... +......... ....
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d-~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~ 67 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD-FCRGLMSDDE------------NDQTVTGAAFDVLHYIVS 67 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH-HHHHHHCSST------------TCGGGHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH-HHHHHhcCcc------------cchhhHHHHHHHHHHHHH
Confidence 3456789999999999999999999755 234444443 3333222111 0111111111 1112
Q ss_pred HHHHhcCCCcEEEeCCCC---CHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 91 KAMEESGNDKFLIDGFPR---NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~---~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
..+ . .+...+++.... .++|+..+++++..+|.+++ ||+|+..+..|..+|.
T Consensus 68 ~~~-~-~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~ll-lDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 68 KRL-Q-LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVV-FNLPEKVCQERNKNRT 122 (171)
T ss_dssp HHH-H-TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEE-ECCCHHHHHHHHHTCS
T ss_pred HHH-h-CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEE-EeCCHHHHHHHHhccc
Confidence 222 1 234455665432 37888899999988896555 9999999999988763
No 79
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.21 E-value=5.8e-12 Score=94.11 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l-g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 95 (182)
.+.++.+|+|+|++||||||+++.|++.+ ++.+++.|++++....... ....+.++ .....+......+.+...+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIET-DKNGFLQY-DVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCB-CTTSCBCC-SSGGGBCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhc-cccCCChh-HHHHHhHHHHHHHHHHHHHhC
Confidence 45778899999999999999999999888 7888998877643211100 00000000 000001122233333332221
Q ss_pred -------------cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 96 -------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 96 -------------~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.....+|+||+..... ..+...+|.+|++++|.+.+.+|+.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~~------~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 151 (207)
T 2qt1_A 95 ARHSVVSTDQESAEEIPILIIEGFLLFNY------KPLDTIWNRSYFLTIPYEECKRRRSTRV 151 (207)
T ss_dssp HTTSSCCC-----CCCCEEEEECTTCTTC------GGGTTTCSEEEEEECCHHHHHHHHHHSC
T ss_pred CCCCCcCCCeeecCCCCEEEEeehHHcCc------HHHHHhcCeeEEEECCHHHHHHHHHHcC
Confidence 1245788999643210 1122357899999999999999998873
No 80
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.20 E-value=1.3e-10 Score=87.06 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH----H--
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----V-- 84 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 84 (182)
...++.+|+|+|++||||||+++.|++.++ ..+++.+.+ +...... ..+... .
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~--------------~~~~~~~r~~~~~ 85 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKD--------------LGFSEADRNENIR 85 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTT--------------CCSSHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccc--------------cCCCHHHHHHHHH
Confidence 456789999999999999999999999886 667775444 2211110 011111 1
Q ss_pred -HHHHHHHHHHhcCCCcEEEeCCCCC-HHHHHHHHHHhC--------CCCcEEEEEecCHHHHHHHH
Q 030176 85 -TIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTK--------IEPEFVLFFDCSEEEMERRI 141 (182)
Q Consensus 85 -~~~~l~~~l~~~~~~~~ildg~~~~-~~q~~~l~~~~~--------~~~~~vI~ld~~~~~l~~R~ 141 (182)
+...+...+. .+..+|+| +... ...+..+..... ..|+++|||++|.+++.+|+
T Consensus 86 ~~~~~~~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 86 RIAEVAKLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHHHHHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHHHHHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 1112222232 34567778 4332 233444443221 24689999999999999994
No 81
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.20 E-value=1.4e-10 Score=86.68 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=64.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCC----------------H-
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----------------S- 82 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~- 82 (182)
+..+|.|.|++||||||+++.||+++|+.++| ++++..... ..|.....+...+...+ .
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~---~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAK---DGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQ 80 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTC---C---------------------------------C
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHH---hcCCCHHHHHHHhhhchhHHHHHhccccccccccH
Confidence 34689999999999999999999999999999 787654211 11111111100011000 0
Q ss_pred ---HHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 83 ---EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 83 ---~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
+...+.+.++... ...++|++|-... . -+.. ....+.|||++|.+.+.+|+.++.
T Consensus 81 ~~~~~~~~~i~~la~~-~~~~~Vi~Gr~g~--~--vl~~---~~~~~~V~L~A~~e~r~~R~~~~~ 138 (201)
T 3fdi_A 81 DIAIRQFNFIRKKANE-EKESFVIVGRCAE--E--ILSD---NPNMISAFILGDKDTKTKRVMERE 138 (201)
T ss_dssp HHHHHHHHHHHHHHHT-SCCCEEEESTTHH--H--HTTT---CTTEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-cCCCEEEEECCcc--h--hcCC---CCCeEEEEEECCHHHHHHHHHHHh
Confidence 1223333333210 2245667764211 1 1110 112589999999999999998763
No 82
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.20 E-value=6e-11 Score=90.06 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=60.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEec-HHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHH-------
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------- 85 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~-~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 85 (182)
..++.+|+|.|++||||||+++.|++.++. .++. .. ...+...+..+++++.....+.....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr------eP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~ 91 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR------EPGGTLLNESVRNLLFKAQGLDSLSELLFFIAM 91 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE------SSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee------CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 367899999999999999999999987653 2221 10 01123344444454443222332111
Q ss_pred -HHHHHHHHHh--cCCCcEEEeCCCCC------------HHHHHHHHHHhC-CCCcEEEEEecCHHHHHHHHHhh
Q 030176 86 -IKLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNR 144 (182)
Q Consensus 86 -~~~l~~~l~~--~~~~~~ildg~~~~------------~~q~~~l~~~~~-~~~~~vI~ld~~~~~l~~R~~~R 144 (182)
.+.+.+.+.. ..+..+|.|.|..+ ......+..... ..||++||||+|+++..+|+ +|
T Consensus 92 R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~r 165 (223)
T 3ld9_A 92 RREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CK 165 (223)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-----------
T ss_pred HHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-cc
Confidence 1111121111 23567888875321 222233333232 47999999999999999999 44
No 83
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.17 E-value=2.5e-10 Score=83.25 Aligned_cols=113 Identities=20% Similarity=0.286 Sum_probs=60.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecH-HHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHH--HHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA-GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK--LLQKA 92 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~-~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~ 92 (182)
.++.+|+|+|++||||||+++.|++.+ |+.++.. ++.++...... .+...++ .+..... .....
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN--LGFSPED--------REENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTT--CCSSHHH--------HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhc--ccccccc--------HHHHHHHHHHHHHH
Confidence 457899999999999999999999988 8766532 23332211110 0000000 0011111 11122
Q ss_pred HHhcCCCcEEEeCCCC-CHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHh
Q 030176 93 MEESGNDKFLIDGFPR-NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 93 l~~~~~~~~ildg~~~-~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
+.. .+ .+++.++.. ...++..+.... ...|+++|||++|.+++.+|+.+
T Consensus 73 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~ 124 (179)
T 2pez_A 73 FAD-AG-LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 124 (179)
T ss_dssp HHH-TT-CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred HHH-CC-CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence 222 23 344544432 222222222221 12478899999999999999754
No 84
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.14 E-value=1.6e-09 Score=82.25 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~ 61 (182)
....+|+|+|++||||||+++.||+++|+.+++ ++++.....
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 345799999999999999999999999999999 566555443
No 85
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.13 E-value=2.8e-10 Score=84.80 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+.++.+|+|+|||||||||+++.|++.++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457788999999999999999999999884
No 86
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.09 E-value=2.5e-10 Score=86.77 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=26.9
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
......++.+|+|.|++||||||+++.|+..
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3445678899999999999999999999866
No 87
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.09 E-value=2.4e-09 Score=79.73 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHH----------HHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV----------TIKL 88 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 88 (182)
++|+|.|+.||||||+++.|++.| |+.++...+ ......+..+.+.+......+... ..+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999877 554442210 012223333333333332222111 1111
Q ss_pred HHHHHHhcCCCcEEEeCCCCC------------HHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhccCCCCCcc
Q 030176 89 LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQVRQKLPFS 154 (182)
Q Consensus 89 l~~~l~~~~~~~~ildg~~~~------------~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~r~~~~~~ 154 (182)
+...+ ..+..+|.|.|..+ ......+.... ...||++|+||.|++...+|..+|+ | ..
T Consensus 75 I~~~L--~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d--r----~e 146 (197)
T 3hjn_A 75 IKQYL--SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN--R----FE 146 (197)
T ss_dssp HHHHH--TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C--T----TC
T ss_pred HHHHH--HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC--c----cc
Confidence 22222 34677888876321 22222332222 4569999999999999999966552 2 22
Q ss_pred hHHHHHHHHHhhhh
Q 030176 155 WGVFCLFIMLSFSS 168 (182)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (182)
..+|.+-++..|..
T Consensus 147 ~~ef~~rv~~~y~~ 160 (197)
T 3hjn_A 147 KREFLERVREGYLV 160 (197)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 23566666666544
No 88
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.04 E-value=7.8e-10 Score=85.38 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-HHHHc---CChhhHH--HH-HHHHcC----CCCCHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-AEIKS---GSENGTM--IQ-NMIKEG----KIVPSEVTIKLLQ 90 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-~~~~~---~~~~~~~--~~-~~~~~~----~~~~~~~~~~~l~ 90 (182)
++|+|+||+||||||+++.|++.++..+++.|++.. ..... ....... .. .++... ..+......+.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 479999999999999999999999999998877631 11100 0000000 00 000000 0122222222333
Q ss_pred HHHHh-cCCCcEEEeCCCCCHHHHHHHHHH----hCCCCcEEEEEecCH-HHHHHHHHhhhc
Q 030176 91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFVLFFDCSE-EEMERRILNRNQ 146 (182)
Q Consensus 91 ~~l~~-~~~~~~ildg~~~~~~q~~~l~~~----~~~~~~~vI~ld~~~-~~l~~R~~~R~~ 146 (182)
..+.- ..+..+|+++-.. .....+... .+. ...+||+++|. +.+.+|+.+|..
T Consensus 82 ~~i~~~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~-~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 82 FEVDWRKSEEGLILEGGSI--SLLNCMAKSPFWRSGF-QWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HHHHTTTTSSEEEEEECCH--HHHHHHHHCTTTTSSC-EEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEeccHH--HHHHHHHhcccccccC-ceEEEEecchhHHHHHHHHHHHHH
Confidence 33311 2345566765322 233333332 111 12688899997 999999999964
No 89
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.02 E-value=3e-09 Score=91.57 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCcEecH-HHHHHHHHHcCChhh-HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA-GDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAM 93 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l---g~~~~~~-~di~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (182)
.++.+|+|+|++||||||+++.|++.+ |+.+++. ++.++.......... ....+.+ +.+.+.+...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHH
Confidence 378899999999999999999999998 8766544 344443222110000 0000000 01122222222
Q ss_pred HhcCCCcEEEeCCCCCHHHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHh
Q 030176 94 EESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILN 143 (182)
Q Consensus 94 ~~~~~~~~ildg~~~~~~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~ 143 (182)
..+..++.+........+..+...+ ...++++|||++|.+++.+|+.+
T Consensus 122 --~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 122 --DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp --HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred --hCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 2344555552212233344444333 12367899999999999999763
No 90
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.02 E-value=1.2e-08 Score=86.37 Aligned_cols=125 Identities=16% Similarity=0.292 Sum_probs=72.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCc-----EecHHHHHHHHHHcCChhhHHHHHHHHcCCC---CCHHHHHHHH-
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT-----HLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---VPSEVTIKLL- 89 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~-----~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l- 89 (182)
..+.+|+++|.|||||||+++.|++.+++. .++.|++........... ..+.. .+.. .....+...+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-~~f~~---~~~~~~~~re~~~~~~l~ 108 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-NFFRP---DNEEAMKVRKQCALAALR 108 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-GGGCT---TCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-cccCc---ccHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999988532 467788655544321110 00000 0000 0001111122
Q ss_pred --HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHh---CCCCcEEEEEecC-HHHHHHHHHhhhccC
Q 030176 90 --QKAMEESGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCS-EEEMERRILNRNQVR 148 (182)
Q Consensus 90 --~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~---~~~~~~vI~ld~~-~~~l~~R~~~R~~~r 148 (182)
...+....+..+|+|.......++..+...+ +. ..++|++.+| .+.+.+|+.+|...+
T Consensus 109 ~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~-~v~~l~~~~~d~e~i~~ri~~r~~~r 172 (520)
T 2axn_A 109 DVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDF-KAFFIESVCDDPTVVASNIMEVKISS 172 (520)
T ss_dssp HHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEEECCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCChHHHHHHHHHhhhhcC
Confidence 2222224567889999878777776665443 22 2245666677 677778887775443
No 91
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.98 E-value=7.1e-10 Score=83.76 Aligned_cols=140 Identities=11% Similarity=0.195 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHcCC-CCCHHHH-----------H
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPSEVT-----------I 86 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~ 86 (182)
.++.+|+|.|++||||||+++.|++.++..... ++. -..+...|..+++++.... ....... .
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999852111 111 0123455666666665543 2221110 0
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCC-HH----------HHHHHHHH--hCCCCcEEEEE-ecCHHHHHHHHHhhhccCCCCC
Q 030176 87 KLLQKAMEESGNDKFLIDGFPRN-EE----------NRAAFEAV--TKIEPEFVLFF-DCSEEEMERRILNRNQVRQKLP 152 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~~-~~----------q~~~l~~~--~~~~~~~vI~l-d~~~~~l~~R~~~R~~~r~~~~ 152 (182)
+.+...+ ..+..+|.|.|..+ .. ...++... ....||++||| |.|++++.+|+..|. +.
T Consensus 78 ~~I~paL--~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-----dr 150 (216)
T 3tmk_A 78 DKIKKDL--LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-----ER 150 (216)
T ss_dssp HHHHHHH--HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-----CT
T ss_pred HHHHHHH--HcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-----cc
Confidence 1122222 23667888876322 11 12233322 13469999999 999999998875331 11
Q ss_pred cchHHHHHHHHHhhhhhc
Q 030176 153 FSWGVFCLFIMLSFSSCI 170 (182)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~ 170 (182)
.....|.+-++..|..-+
T Consensus 151 ~E~~~f~~rvr~~Y~~la 168 (216)
T 3tmk_A 151 YETVKFQEKVKQTFMKLL 168 (216)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 222466666666555443
No 92
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.95 E-value=2.2e-10 Score=87.57 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=67.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH------------------HHHHHc--C-C--hhhHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL------------------RAEIKS--G-S--ENGTMI 70 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~------------------~~~~~~--~-~--~~~~~~ 70 (182)
-++.+.++.+++|+||+|||||||++.|+ |+...+.|++. +..... + . ......
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 100 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA 100 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcH
Confidence 35678899999999999999999999999 54433333221 111110 0 0 011111
Q ss_pred HHHHHc----C--CCCCHHHHHHHHHHHHHhcCCCcE----EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 71 QNMIKE----G--KIVPSEVTIKLLQKAMEESGNDKF----LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 71 ~~~~~~----~--~~~~~~~~~~~l~~~l~~~~~~~~----ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+.. . ...+.+...+.+.+.+...+.... -.......++|+..+++++..+|+++| +|+|+
T Consensus 101 ~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll-lDEPt 173 (235)
T 3tif_A 101 LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL-ADQPT 173 (235)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 121111 1 123333333444444443221111 122345569999999999999999877 99998
No 93
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.95 E-value=1.3e-08 Score=74.63 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=63.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc-CChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S 96 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~-~~~~~~di~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~ 96 (182)
+.+++|+||+||||||+++.|++.++. .+++.+++....... ..+.... .......+.+...... .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD----------ELLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccch----------hHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999987765 677776654321000 0000000 0001111222111111 1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHH---hCCC-CcEEEEEecCHHHHHHHHHhhh
Q 030176 97 GNDKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 97 ~~~~~ildg~~~~~~q~~~l~~~---~~~~-~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
.+..+++|++. .......+... .+.. .-.+++|++|.+.+.+|...|.
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 23467788853 33333333222 1222 2246779999999999999874
No 94
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.93 E-value=5.3e-10 Score=90.53 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=65.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHH---cCC-----hhhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIK---SGS-----ENGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~---~~~-----~~~~~~~ 71 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|.+.. .... ... .......
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~---GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~ 123 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF 123 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHH
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHH
Confidence 35678999999999999999999999999 654443333211 1111 000 0011111
Q ss_pred HHHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+.. ....+.+...+.+.+.+..-+.... ........++|+..+++++..+|++++ +|+|+
T Consensus 124 env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL-lDEPT 191 (366)
T 3tui_C 124 GNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL-CDQAT 191 (366)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE-EESTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 11100 0123333333334444433111111 122334459999999999999999877 99998
No 95
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.91 E-value=1.4e-08 Score=86.97 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=64.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHH-------H
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-------V 84 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 84 (182)
..++.+|+|+|++||||||+++.|++.++ +..++.+. ++...... ..+... .
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~--------------~~f~~~er~~~i~r 457 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSE--------------LGFTREDRHTNIQR 457 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTT--------------CCCSHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccc--------------cCCChhHHHHHHHH
Confidence 35678999999999999999999999976 24555544 44432211 111111 1
Q ss_pred HHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHH
Q 030176 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 85 ~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~ 142 (182)
+...+...+. .+..+|.+........+..+...+.. .++++|||++|.+++.+|..
T Consensus 458 i~~v~~~~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 458 IAFVATELTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHHHHHHHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred HHHHHHHHHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence 1122222222 24556666443334444444443321 24589999999999999964
No 96
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.91 E-value=2.4e-08 Score=74.32 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHc--CChhhHHHHHHHHcCCCCCHHHHHHH------
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKL------ 88 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (182)
+..+|+|+|.|||||+|+++.+.+.+| +..+..+|.+++.... +.+....+.+. ....-.......+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~--~ykE~~R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS--TYKEAFRKDMIRWGEEKRQ 87 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC---------CCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchh--hhHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999988785 6678999999864321 11111100000 0000000011100
Q ss_pred ------HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHH
Q 030176 89 ------LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 89 ------l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~ 142 (182)
+...+...+...+|+++. +...+++.|.+.++ ..-++|.+.++++++.+|..
T Consensus 88 ~d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~~~g-~~~~iirI~as~~~R~~Rg~ 145 (202)
T 3ch4_B 88 ADPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFREAYG-AVTQTVRVVALEQSRQQRGW 145 (202)
T ss_dssp HCTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHHHHG-GGEEEEEEEECHHHHHHTTC
T ss_pred cCchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHHhCC-CcEEEEEEECCHHHHHHHhh
Confidence 011111223457889998 88899999988775 22368899999999999953
No 97
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.91 E-value=5.2e-10 Score=83.27 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh---CCc--EecHHHHHHHHHH---cCChhhHHHHHHHHcCCCCCHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIK---SGSENGTMIQNMIKEGKIVPSEVTIKLL 89 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l---g~~--~~~~~di~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (182)
..++.+++|+|++||||||+++.|+..+ +.. ..+.+........ .+...+.. +.. ..+..+...+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~~--~~~d~~~l~~~v 93 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YYY--LQWDVEWLTHQL 93 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HHH--TSSCHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CCc--cccCHHHHHHHH
Confidence 4677899999999999999999999865 432 3333433221111 11111111 110 112222222221
Q ss_pred HHHH-----------------------HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 90 QKAM-----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 90 ~~~l-----------------------~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
...+ .......+|+|+....... + ....|.+||+++|.+++++|+.+|+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~----~~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---W----RPFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---T----GGGCSEEEEECCC------------
T ss_pred HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---H----HhhcCEEEEEeCCHHHHHHHHhcCC
Confidence 1000 0013457888885332111 1 1125799999999999999999885
No 98
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.91 E-value=4.3e-10 Score=87.92 Aligned_cols=116 Identities=21% Similarity=0.325 Sum_probs=66.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH-------------HHHHH-----cCCh----hhHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL-------------RAEIK-----SGSE----NGTMIQN 72 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~-------------~~~~~-----~~~~----~~~~~~~ 72 (182)
++++.++.+++|+||+|||||||++.|+ |+...+.|++. ..... .+.. ......+
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~---Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e 104 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFN---GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ 104 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH---cCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHH
Confidence 5667899999999999999999999999 54332222211 11111 0100 0111111
Q ss_pred HHH---cCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 MIK---EGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+. .....+.+...+.+.+.+..-+-... -.......++|+..+++++..+|+++| ||+|+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl-LDEPt 171 (275)
T 3gfo_A 105 DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI-LDEPT 171 (275)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE-EECTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence 111 11223444444444554443211111 122345569999999999999999887 99998
No 99
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.90 E-value=8.7e-09 Score=87.70 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=66.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~-----~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (182)
..+.+|+|+|++||||||+++.|++.++. .+++.+. +++...........-.. .+ -+.+...+...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~--~~-----l~~i~~~~~~~l 441 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRI--TN-----ILRVGFVASEIV 441 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHH--HH-----HHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHH--HH-----HHHHHHHHHHHH
Confidence 45789999999999999999999998863 5666544 44433211100000000 00 001111222222
Q ss_pred HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-EEEEEecCHHHHHHHHH
Q 030176 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRIL 142 (182)
Q Consensus 94 ~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-~vI~ld~~~~~l~~R~~ 142 (182)
. .+..+|+|........+..+...+. .++ ++|+|++|.+++.+|+.
T Consensus 442 ~--~G~~VI~d~~~~~~~~r~~~~~~l~-~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 442 K--HNGVVICALVSPYRSARNQVRNMME-EGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp H--TTCEEEEECCCCCHHHHHHHHTTSC-TTCEEEEEEECCGGGHHHHCC
T ss_pred h--CCCEEEEEcCCCCHHHHHHHHHHhh-cCCEEEEEEeCCHHHHHHHhh
Confidence 2 3567888864444444444444443 256 89999999999999985
No 100
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.90 E-value=4.1e-11 Score=96.92 Aligned_cols=117 Identities=16% Similarity=0.282 Sum_probs=68.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc----------CChh-----------hHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----------GSEN-----------GTMIQN 72 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~----------~~~~-----------~~~~~~ 72 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... .... ..+..+
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~e 99 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLA---GFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR 99 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHH
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHh---cCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHH
Confidence 35677899999999999999999999999 76555554443221100 0001 112222
Q ss_pred HHHcCC---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 73 MIKEGK---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 73 ~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+..+. ..+.+...+.+.+.+..-+-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 100 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL-LDEPt 166 (359)
T 3fvq_A 100 NIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL-LDEPF 166 (359)
T ss_dssp HHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 222221 12222223333333333111111 122344569999999999999998777 99998
No 101
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.89 E-value=1.7e-09 Score=83.60 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=27.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh-CCcEe
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHL 50 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l-g~~~~ 50 (182)
..++.+|+|.|++||||||+++.|++.+ +..++
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3567899999999999999999999998 55444
No 102
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.87 E-value=4.1e-10 Score=91.69 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=68.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhhH-----------HHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENGT-----------MIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~~-----------~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... ....+. ...+.+..
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~ 98 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIA---GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF 98 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHH---cCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHH
Confidence 35677899999999999999999999999 76655555442211110 000111 11111000
Q ss_pred ---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 ---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
....+.+...+.+.+.+..-.-... ........++|+..+++++..+|++++ ||+|+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL-LDEPt 161 (381)
T 3rlf_A 99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPL 161 (381)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE-EECCC
Confidence 0123444344444444443221111 122344559999999999988998777 99998
No 103
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.86 E-value=1.6e-09 Score=85.33 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~ 57 (182)
++.+|+|+|++||||||+++.|++.+| ..+++.|++++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 457899999999999999999999887 67888888764
No 104
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.85 E-value=1.9e-09 Score=85.99 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..+.+|+|+|++||||||+++.|+..++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999998775
No 105
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.85 E-value=8.4e-08 Score=70.84 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=25.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+.++.+++|+||+|||||||++.|+..+.
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999999997764
No 106
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.85 E-value=5.9e-10 Score=90.32 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=66.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... .... .....+.+..
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIA---GIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAF 98 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHh---cCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHH
Confidence 35667899999999999999999999999 66544444432211000 0000 0111111110
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+.+...+.+.+.+..-.-... .+ .....++|+..+++++..+|++++ ||+|+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~ 161 (362)
T 2it1_A 99 PLELRKAPREEIDKKVREVAKMLHIDKL-LNRYPWQLSGGQQQRVAIARALVKEPEVLL-LDEPL 161 (362)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTC-TTCCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESGG
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchH-hhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence 0 112333333334444443221111 22 344559999999999999999777 99998
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.84 E-value=9.7e-09 Score=76.50 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL 56 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg--~~~~~~~di~ 56 (182)
.++.+|+|+|++|||||||++.|+..++ +.+++.+..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 5678999999999999999999999888 7777766543
No 108
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.84 E-value=6.1e-10 Score=90.51 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=67.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChh-----------hHHHHHHHHcC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSEN-----------GTMIQNMIKEG 77 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~-----------~~~~~~~~~~~ 77 (182)
++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... .... .....+.+..+
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 107 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIA---GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFP 107 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTT
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHH---cCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHH
Confidence 5567899999999999999999999999 65544444332111000 0000 11122222222
Q ss_pred C---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 K---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 ~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. ..+.+...+.+.+.+..-.-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 108 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~ 169 (372)
T 1v43_A 108 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL-MDEPL 169 (372)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EcCCC
Confidence 1 12333333334444433211111 122355679999999999999998777 99998
No 109
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.83 E-value=1.1e-08 Score=79.50 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=64.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH----------------HHHHHc--C-C--hhhHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL----------------RAEIKS--G-S--ENGTMIQNM 73 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~----------------~~~~~~--~-~--~~~~~~~~~ 73 (182)
++++.++.+++|.||+|||||||++.|+ |+...+.|.+. +..... + . .......+.
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 120 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNN 120 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHH
Confidence 5667899999999999999999999999 54333222221 111110 0 0 001111111
Q ss_pred HH----cCCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 74 IK----EGKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 74 ~~----~~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. .....+.+...+.+.+.+..-+-... -.......++|+..+++++..+|+++| ||+|+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll-LDEPt 187 (263)
T 2olj_A 121 ITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML-FDEPT 187 (263)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE-EeCCc
Confidence 11 11112322222333333333111111 122345569999999999999999777 99998
No 110
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.82 E-value=8.1e-09 Score=78.76 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCc
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYT 48 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l-g~~ 48 (182)
+|.+|+|.|++||||||+++.|++.+ +..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 46899999999999999999999998 443
No 111
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.82 E-value=8.6e-10 Score=89.10 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=66.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CChhh-----------HHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSENG-----------TMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~~~-----------~~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... ....+ .+..+.+..
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 110 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIA---GLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSF 110 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 35567899999999999999999999999 65544444332211000 00000 111111110
Q ss_pred ---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 ---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
....+.+...+.+.+.+..-+-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 111 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~ 173 (355)
T 1z47_A 111 GLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL-FDEPF 173 (355)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 0112333223334444433211111 022344569999999999999999777 99998
No 112
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.81 E-value=1.1e-09 Score=83.07 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=63.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH------------------HHHHc--C-C--hhhHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR------------------AEIKS--G-S--ENGTMIQ 71 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~------------------~~~~~--~-~--~~~~~~~ 71 (182)
++.+.++.+++|+||+|||||||++.|+ |+...+.|.+.. ..... + . .......
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 100 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILG---LLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTAL 100 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHT---TSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHH
Confidence 5667899999999999999999999999 543333222211 11110 0 0 0001111
Q ss_pred HHHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+.. ....+.+...+.+.+.+..-+-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll-LDEPt 168 (224)
T 2pcj_A 101 ENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF-ADEPT 168 (224)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE-EESTT
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCC
Confidence 11100 0112222222333344433211111 122345569999999999999999777 99998
No 113
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.81 E-value=2.3e-08 Score=79.99 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
+++.+|+|.|+-||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45689999999999999999999988853
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.81 E-value=3.5e-08 Score=75.46 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=28.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~ 48 (182)
-++...++.+|+|+||+|||||||++.|+..+|..
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 35677889999999999999999999999988855
No 115
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.81 E-value=2.7e-09 Score=80.50 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=62.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH---------HHc--C-C--hhhHHHHHHH----H-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE---------IKS--G-S--ENGTMIQNMI----K- 75 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~---------~~~--~-~--~~~~~~~~~~----~- 75 (182)
++.+.++.+++|.||+|||||||++.|+ |+...+.|++.... ... + . .......+.+ .
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 105 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTIS---TYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL 105 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh
Confidence 5567889999999999999999999999 54333333221110 000 0 0 0011111111 0
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.....+.+.++++....... . .-...+...++|+..+++++..+|++++ ||+|+
T Consensus 106 ~~~~~~~~~~~~~l~~~gl~~~-~-~~~~~LSgGqkqrv~laraL~~~p~lll-LDEPt 161 (214)
T 1sgw_A 106 YGVKVNKNEIMDALESVEVLDL-K-KKLGELSQGTIRRVQLASTLLVNAEIYV-LDDPV 161 (214)
T ss_dssp TTCCCCHHHHHHHHHHTTCCCT-T-SBGGGSCHHHHHHHHHHHHTTSCCSEEE-EESTT
T ss_pred cCCchHHHHHHHHHHHcCCCcC-C-CChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCC
Confidence 1111112333333332211111 1 1122345569999999999999999877 99996
No 116
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.80 E-value=4.7e-10 Score=90.80 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=66.6
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------CCh-----------hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------GSE-----------NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------~~~-----------~~~~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... ... ......+.+..
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLA---GIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAF 98 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHG
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHH---CCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 35667899999999999999999999999 66554444432211000 000 01122222222
Q ss_pred CC---CCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK---IVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~---~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ..+.+...+.+.+.+..-.-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL-LDEP~ 161 (359)
T 2yyz_A 99 PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL-FDEPL 161 (359)
T ss_dssp GGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence 21 11222222233333333111111 022344569999999999999999777 99998
No 117
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.80 E-value=6.2e-10 Score=86.65 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=63.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc-----CChhhHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS-----GSENGTMIQNMIK 75 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~-----~~~~~~~~~~~~~ 75 (182)
++++.++.+++|+||+|||||||++.|+ |+...+.|++.. ..... .........+.+.
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLT---GYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQ 107 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHT---SSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHH
Confidence 5667899999999999999999999999 654443333211 11110 0001112222222
Q ss_pred cCC-CCCHHHHHHHHHHHHHhcCC---CcEEEeCCCCCHHHHHHHHHHhCC------CCcEEEEEecCH
Q 030176 76 EGK-IVPSEVTIKLLQKAMEESGN---DKFLIDGFPRNEENRAAFEAVTKI------EPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~~-~~~~~~~~~~l~~~l~~~~~---~~~ildg~~~~~~q~~~l~~~~~~------~~~~vI~ld~~~ 134 (182)
.+. ........+.+.+.+..-.- ...-.......++|+..+++++.. +|+++| +|+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl-lDEPt 175 (266)
T 4g1u_C 108 MGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF-LDEPT 175 (266)
T ss_dssp GGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE-ECCCC
T ss_pred hhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE-EeCcc
Confidence 211 01111111222333322110 001123355669999999999977 898777 99997
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.79 E-value=1.5e-08 Score=74.18 Aligned_cols=120 Identities=21% Similarity=0.274 Sum_probs=63.4
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (182)
..+.++.+++|+|+|||||||+++.|++.++. ..++.+++.... ......+...+... +...+.+.+....
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~------~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ------QNRMIMQIAADVA 76 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH------HHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchhh------hhHHHHHHHHHHH
Confidence 34678899999999999999999999976543 366766654321 10000000000000 0111222221111
Q ss_pred --HhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhhh
Q 030176 94 --EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145 (182)
Q Consensus 94 --~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l~~R~~~R~ 145 (182)
....+..++++...... ....+.. ... +-..+++.++.+.+++|...|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~-~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 77 GRYAKEGYFVILDGVVRPD-WLPAFTA-LAR-PLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHHHHTSCEEEECSCCCTT-TTHHHHT-TCS-CEEEEEEECCHHHHHHHHHTTC
T ss_pred HHHhccCCeEEEeccCcHH-HHHHHHh-cCC-CeEEEEecCCHHHHHHHHHhcC
Confidence 11223456677754321 1112211 122 2257889999999999999883
No 119
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.77 E-value=1.3e-09 Score=84.32 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=62.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH---------HHHH----c--C---ChhhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR---------AEIK----S--G---SENGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~---------~~~~----~--~---~~~~~~~~~~~~~ 76 (182)
++.+.++.+++|.||+|||||||++.|+ |+...+.|.+.. .... . + .....+..+.+..
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIIS---TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 5677899999999999999999999999 544333332211 0011 0 0 0001111111100
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
. ...+.+...+.+.+.+..-+-... -...+...++|+..+++++..+|++++ ||+|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll-LDEPt 174 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI-LDEPT 174 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 0 012222111222233322111011 122355669999999999999999777 99998
No 120
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.77 E-value=3.9e-08 Score=82.21 Aligned_cols=122 Identities=16% Similarity=0.239 Sum_probs=67.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCC----CCHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKLL 89 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l 89 (182)
..+.+|+++|.|||||||+++.|++.++ ...++.+++............. ...... .....+...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~i-----fd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEF-----FLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGG-----GCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccc-----cCCCCHHHHHHHHHHHHHHH
Confidence 5567999999999999999999998875 3455666654443221010000 000000 0011111222
Q ss_pred ---HHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEe---cCHHHHHHHHHhhh
Q 030176 90 ---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD---CSEEEMERRILNRN 145 (182)
Q Consensus 90 ---~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld---~~~~~l~~R~~~R~ 145 (182)
...+....+..+|+|.......++..+...+......+++++ .+.+.+.+|+..+.
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~ 173 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK 173 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence 333334556788899877777666666443321112355566 55777777776554
No 121
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.76 E-value=1.4e-08 Score=78.79 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=27.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
-++++.++.+++|.||+|||||||++.|+.
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356778999999999999999999999993
No 122
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.75 E-value=8.5e-10 Score=88.95 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=63.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH------------HHcCCh-----hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKSGSE-----NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~------------~~~~~~-----~~~~~~~~~~~ 76 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+. .....+ ...+..+.+..
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~ 95 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIA---GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF 95 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHH---TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHH---cCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 35677899999999999999999999999 65544444332111 110000 00011111000
Q ss_pred C---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ...+.+ +.+.+.+..-.-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 96 ~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL-LDEP~ 155 (348)
T 3d31_A 96 GMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL-LDEPL 155 (348)
T ss_dssp HHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE-EESSS
T ss_pred HHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence 0 001111 222333322111111 122344569999999999999998777 99998
No 123
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.75 E-value=9.2e-10 Score=88.95 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=68.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----------cCCh-----------hhHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----------SGSE-----------NGTMIQ 71 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----------~~~~-----------~~~~~~ 71 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+... .... ......
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~ 100 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIA---GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF 100 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHH---TSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence 35677899999999999999999999999 6554444433221100 0000 011222
Q ss_pred HHHHcC---CCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 72 NMIKEG---KIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 72 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+..+ ...+.+...+.+.+.+..-+-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 101 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLL-LDEP~ 168 (353)
T 1oxx_K 101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL-LDEPF 168 (353)
T ss_dssp HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence 222222 122333333344444433211111 122344569999999999999999777 99998
No 124
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.75 E-value=3.5e-10 Score=84.42 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
++|+|+|++||||||+++.|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999885
No 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.74 E-value=7.5e-09 Score=77.29 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..++.+++|+|++|||||||++.|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999998774
No 126
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.74 E-value=1.3e-09 Score=83.57 Aligned_cols=115 Identities=15% Similarity=0.180 Sum_probs=63.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH---------------HHHHHc--C---ChhhHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL---------------RAEIKS--G---SENGTMIQNMI 74 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~---------------~~~~~~--~---~~~~~~~~~~~ 74 (182)
++++.++.+++|.||+|||||||++.|+ |+...+.|++. +..... + .....+..+.+
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 102 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIA---GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL 102 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHH
Confidence 5567899999999999999999999999 54333332221 110110 0 00111222222
Q ss_pred HcCC--CCCH----HHHHHHHHHH-HHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 75 KEGK--IVPS----EVTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 75 ~~~~--~~~~----~~~~~~l~~~-l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
..+. .... +.+.+++... ......... .......++|+..+++++..+|++++ ||+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~~LSgGq~qrv~lAraL~~~p~lll-LDEPt 167 (240)
T 1ji0_A 103 MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQL-GGTLSGGEQQMLAIGRALMSRPKLLM-MDEPS 167 (240)
T ss_dssp HGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSB-SSSSCHHHHHHHHHHHHHTTCCSEEE-EECTT
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCC-hhhCCHHHHHHHHHHHHHHcCCCEEE-EcCCc
Confidence 2211 1111 1222222222 112111111 23455669999999999999999777 99998
No 127
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.74 E-value=9.3e-10 Score=84.41 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=64.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH------------HcCC-----hhhHHHHHHHHcC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI------------KSGS-----ENGTMIQNMIKEG 77 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~------------~~~~-----~~~~~~~~~~~~~ 77 (182)
++++.+ .+++|.||+|||||||++.|+ |+...+.|++..+.. .... .......+.+..+
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 94 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIA---GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHH---TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHh---CCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHH
Confidence 556778 999999999999999999999 654444443321110 0000 0111222222222
Q ss_pred CC-CCHHHHHHHHHHHHHhcCCCc---EEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 KI-VPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 ~~-~~~~~~~~~l~~~l~~~~~~~---~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.. .......+.+.+.+..-+-.. .-.......++|+..+++++..+|++++ ||+|+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll-LDEPt 154 (240)
T 2onk_A 95 LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL-LDEPL 154 (240)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE-EESTT
T ss_pred HHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 11 111111223334443321111 1122345569999999999999999888 99998
No 128
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.72 E-value=4e-08 Score=77.82 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.++.+++|+|++|||||||++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6778999999999999999999998776
No 129
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.71 E-value=5.1e-10 Score=91.54 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=66.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~~~~----~~~~~~~~~~~ 76 (182)
++++.++.+++|.||+|||||||++.|+ |+.. +.|++.. ..+....+ ......+.+..
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~ia---Gl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~ 116 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFL---RLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDP 116 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHH---TCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCT
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHh---CCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhh
Confidence 5567899999999999999999999999 6543 3333311 11110000 01122222221
Q ss_pred CCCCCHHHHHHHHHHH-----HHhcC-C-CcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCHHHH
Q 030176 77 GKIVPSEVTIKLLQKA-----MEESG-N-DKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (182)
Q Consensus 77 ~~~~~~~~~~~~l~~~-----l~~~~-~-~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~~~l 137 (182)
......+.+.+++... +.+.. . ...+-+. ....++|+..+++++..+|++++ ||+|+..+
T Consensus 117 ~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL-LDEPts~L 186 (390)
T 3gd7_A 117 NAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL-LDEPSAHL 186 (390)
T ss_dssp TCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE-EESHHHHS
T ss_pred ccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE-EeCCccCC
Confidence 2223344444443321 11111 0 1111111 45569999999999999998777 99999544
No 130
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=1.7e-08 Score=75.39 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+++.+|+|+||+||||||+++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999998874
No 131
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.71 E-value=4e-10 Score=91.62 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=65.0
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc------------CChh-----------hHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS------------GSEN-----------GTMI 70 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~------------~~~~-----------~~~~ 70 (182)
-++++.++.+++|.||+|||||||++.|+ |+...+.|++..+.... .... ..+.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~ia---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 98 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIA---GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV 98 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHH---TSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHH---cCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCH
Confidence 35567889999999999999999999999 65544444332211000 0000 0111
Q ss_pred HHHHHc---CCCCCHHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 71 QNMIKE---GKIVPSEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 71 ~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+.+.. ....+.+...+.+.+.+..-.-... -.......++|+..+++++..+|++++ ||+|+
T Consensus 99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL-LDEP~ 167 (372)
T 1g29_1 99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL-MDEPL 167 (372)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE-EECTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE-ECCCC
Confidence 111110 0112322222233333332111111 122345569999999999999998777 99998
No 132
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.71 E-value=2.1e-07 Score=68.57 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.|+|+||+|||||||++.|.+.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 488999999999999999988763
No 133
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.71 E-value=9.9e-10 Score=85.03 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=26.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++++.++.+++|.||+|||||||++.|+.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 56678999999999999999999999993
No 134
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.70 E-value=3.5e-09 Score=82.95 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+||+|||||||++.|+.
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 55678999999999999999999999993
No 135
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.70 E-value=2.7e-09 Score=85.39 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
++++|+|+||+|||||||+..||++++..+++.|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 457999999999999999999999999888887665
No 136
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.69 E-value=3.7e-09 Score=77.64 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+.+++|+||+||||||+++.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999997653
No 137
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.67 E-value=6.1e-08 Score=77.75 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=26.3
Q ss_pred CCCCeEEEEEcCCCCChHHHH-HHHHHHhCC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQC-ANIVEHFGY 47 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla-~~La~~lg~ 47 (182)
..++.+|+|.|+-||||||++ +.|++.++.
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 356789999999999999999 999988763
No 138
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.66 E-value=3.6e-09 Score=82.30 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=63.8
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------HH---HH--cCCh----hhHHHHHHHHc
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------AE---IK--SGSE----NGTMIQNMIKE 76 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------~~---~~--~~~~----~~~~~~~~~~~ 76 (182)
-++.+.++.+++|+||+|||||||++.|+ |+...+.|++.. .. .. .+.. ...+..+.+..
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~---Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 102 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVA---GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF 102 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHH
Confidence 35678899999999999999999999999 543332222211 10 11 0110 01122222222
Q ss_pred CCC--CC----HHHHHHHHHHHHHh--cCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GKI--VP----SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~~--~~----~~~~~~~l~~~l~~--~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.. .+ .+.+.+++...-.. ...+ .-.......++|+..+++++..+|+++| ||+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lll-LDEPt 166 (266)
T 2yz2_A 103 AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDILI-LDEPL 166 (266)
T ss_dssp TTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred HHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCEEE-EcCcc
Confidence 110 11 22223333322110 0000 0122355669999999999999999887 99998
No 139
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.66 E-value=5.4e-09 Score=80.73 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=64.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH-HHHH---cC--ChhhHHHHHHHHcCC----C---CC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR-AEIK---SG--SENGTMIQNMIKEGK----I---VP 81 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~-~~~~---~~--~~~~~~~~~~~~~~~----~---~~ 81 (182)
++.+.++.+++|.||+|||||||++.|+ |+...+.|++.. .... .. ........+.+..+. . .+
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 101 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLL---GIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP 101 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCC
Confidence 5667899999999999999999999999 654444444320 0000 00 000111222221110 0 11
Q ss_pred HHHHHHHHHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 82 SEVTIKLLQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 82 ~~~~~~~l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+.+.+.+..-+-... -.......++|+..+++++..+|+++| ||+|+
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll-LDEPt 156 (253)
T 2nq2_C 102 KSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLIL-LDEPT 156 (253)
T ss_dssp CHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEE-ESSSS
T ss_pred CHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 11112223333332111010 122355669999999999988999877 99998
No 140
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.65 E-value=1.3e-09 Score=84.09 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=64.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH--------------HHHHc---CC--hhhHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR--------------AEIKS---GS--ENGTMIQNMIK 75 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~--------------~~~~~---~~--~~~~~~~~~~~ 75 (182)
++.+.++.+++|.||+|||||||++.|+ |+...+ |++.. ..... .. .......+.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~---Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMA---GMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT 95 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHT---TSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh---CCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHH
Confidence 5667899999999999999999999999 554333 33211 11110 00 01112333333
Q ss_pred cCCC--CCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCc-------EEEEEecCH
Q 030176 76 EGKI--VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-------FVLFFDCSE 134 (182)
Q Consensus 76 ~~~~--~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~-------~vI~ld~~~ 134 (182)
.+.. ...+.+.+++.........+.. .......++|+..+++++..+|+ +++ ||+|+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll-LDEPt 161 (249)
T 2qi9_C 96 LHQHDKTRTELLNDVAGALALDDKLGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL-LDEPM 161 (249)
T ss_dssp TTCSSTTCHHHHHHHHHHTTCGGGTTSB-GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE-ESSTT
T ss_pred HhhccCCcHHHHHHHHHHcCChhHhcCC-hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE-EECCc
Confidence 2211 1223333333322111100111 23355669999999999888888 777 99998
No 141
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.65 E-value=6e-09 Score=82.62 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=65.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
++.++++.+++|+||+|||||||++.|+ |+...+.|.+ ++..+....+ ...++.+.+..
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~---gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~ 150 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLF---RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRY 150 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHT---TSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHT
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHH---cCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHh
Confidence 4567899999999999999999999998 4433332222 1111111000 11122232333
Q ss_pred CC-CCCHHHHHHHHHH-----HHHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPSEVTIKLLQK-----AMEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~~~~~~~l~~-----~l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ....+.+.+.++. .+.. +.+-...++. ....++|+..+++++..+|+++| ||+|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLl-LDEPt 218 (306)
T 3nh6_A 151 GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIIL-LDEAT 218 (306)
T ss_dssp TSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE-EECCS
T ss_pred hcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence 32 2333333333322 1211 1111122332 34559999999999988898887 99997
No 142
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=4.2e-08 Score=74.25 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=21.2
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHH-HHh
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIV-EHF 45 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La-~~l 45 (182)
.++...++.+++|+||+|||||||++.|+ ..+
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35567889999999999999999999999 765
No 143
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.64 E-value=3.7e-09 Score=81.37 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=64.4
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~ 75 (182)
-++.+.++.+++|+||+|||||||++.|+ |+...+.|++ ++.......+ ...+..+.+.
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 104 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQ---RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS 104 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHh
Confidence 35677899999999999999999999999 5433322222 1111111000 1112233232
Q ss_pred cCC-CCCHHHHHHHHHHH-----HHhcC-CCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EGK-IVPSEVTIKLLQKA-----MEESG-NDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~~-~~~~~~~~~~l~~~-----l~~~~-~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+. ....+.+.+++... +.... +-...++ .....++|+..+++++..+|+++| ||+|+
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lll-LDEPt 173 (247)
T 2ff7_A 105 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI-FDEAT 173 (247)
T ss_dssp TTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE-ECCCC
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCc
Confidence 221 12333333333221 11110 0000111 244559999999999999998777 99997
No 144
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.63 E-value=4.4e-09 Score=80.69 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=65.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH--------------Hc--CC-h-hhHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI--------------KS--GS-E-NGTMIQNMIK 75 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~--------------~~--~~-~-~~~~~~~~~~ 75 (182)
-++.+.++.+++|+||+|||||||++.|+ |+...+.|.+..+.. .. +. . ...+..+.+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 97 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLE---RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT 97 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHT---TSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHh
Confidence 35678899999999999999999999999 544444443322110 00 00 0 0012222222
Q ss_pred cC--CCCCHHHHHHHHHHHHHhcC------CCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EG--KIVPSEVTIKLLQKAMEESG------NDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~--~~~~~~~~~~~l~~~l~~~~------~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+ .....+.+.+++.......- +-...++ ..+..++|+..+++++..+|++++ ||+|+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll-LDEPt 167 (243)
T 1mv5_A 98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM-LDEAT 167 (243)
T ss_dssp SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE-EECCS
T ss_pred hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence 22 11233333333333221110 0011122 244559999999999988998777 99997
No 145
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.63 E-value=1e-08 Score=79.01 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
++.+.++.+++|.||+|||||||++.|+
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667899999999999999999999999
No 146
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.2e-08 Score=83.86 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
.+.++.+++|.||+|||||||++.|+ |+...+.|.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~---Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILA---GKQKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHH---TSSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHh---cCCCCCCceE
Confidence 45788999999999999999999999 6655555554
No 147
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.62 E-value=1.9e-07 Score=75.67 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..++.+|+|.|+-||||||+++.|++.+.
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35677899999999999999999998774
No 148
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.62 E-value=4.2e-09 Score=80.58 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=63.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcCCCCCHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEGKIVPSEVTIK 87 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
-++.+.++.+++|+||+|||||||++.|+ |+...+.|.+..+. .. .... ..+..+.+..+.....+...+
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~~~-~~tv~enl~~~~~~~~~~~~~ 99 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALL---AEMDKVEGHVAIKGSVAYVPQQAWIQ-NDSLRENILFGCQLEEPYYRS 99 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT---TCSEEEEEEEEECSCEEEECSSCCCC-SEEHHHHHHTTSCCCTTHHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEEEEEcCCCcCC-CcCHHHHhhCccccCHHHHHH
Confidence 35677899999999999999999999999 66544444432110 00 0000 111222222221111111111
Q ss_pred HHH-----HHHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 88 LLQ-----KAMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 88 ~l~-----~~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+. +.+.. ..+....++ .....++|+..+++++..+|+++| ||+|+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll-LDEPt 155 (237)
T 2cbz_A 100 VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL-FDDPL 155 (237)
T ss_dssp HHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred HHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCcc
Confidence 111 11110 000001122 344569999999999988998777 99998
No 149
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.61 E-value=1.8e-08 Score=86.42 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=65.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH--------------HHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL--------------RAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~--------------~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++.+++|+||+|||||||++.|+..+ ..+.|.+. +.......+ ...+..+.+..
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY---DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence 5567899999999999999999999999443 23322221 111110000 11233333333
Q ss_pred CC--CCCHHHHHHHHHHH-----HHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK--IVPSEVTIKLLQKA-----MEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~--~~~~~~~~~~l~~~-----l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ...++.+.+.++.. +.. +++-...++ .....++|+..+++++..+|++++ ||+|+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill-lDEpt 508 (582)
T 3b5x_A 440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI-LDEAT 508 (582)
T ss_pred cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence 32 23344444443322 111 111111121 244569999999999988998887 99998
No 150
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.60 E-value=4.4e-08 Score=76.16 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=26.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+||+|||||||++.|+.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 56678999999999999999999999993
No 151
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.59 E-value=3.6e-09 Score=82.16 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=61.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCChhh----------HHHHHHHHcC--
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENG----------TMIQNMIKEG-- 77 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-----~~~~~~----------~~~~~~~~~~-- 77 (182)
++.+. +.+++|.||+|||||||++.|+ |+. .+.|.+...... .....+ .+..+.+...
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~---Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~ 99 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAIS---GLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEE 99 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHT---TSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHH
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHh---CCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhh
Confidence 56678 9999999999999999999999 655 444443221100 000011 0111111000
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 78 -KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 78 -~~~~~~~~~~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.....+.+.+++...-........-.......++|+..+++++..+|++++ ||+|+
T Consensus 100 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll-LDEPt 156 (263)
T 2pjz_A 100 LKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG-LDEPF 156 (263)
T ss_dssp HTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE-EECTT
T ss_pred hcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCc
Confidence 011222222232222110000000012345569999999999988998777 99998
No 152
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.58 E-value=1.8e-09 Score=82.22 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=62.5
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcCCCCCHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEGKIVPSEVTIKL 88 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
++.+.++.+++|+||+|||||||++.|+ |+...+.|.+.... .. ...... ...+.+..+.........+.
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~ 103 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSV 103 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHT---TSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHH
Confidence 5667899999999999999999999999 54433333321110 00 000011 22222222222222111111
Q ss_pred HH-----HHHHhcC-CCcEEE----eCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 89 LQ-----KAMEESG-NDKFLI----DGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 89 l~-----~~l~~~~-~~~~il----dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. +.+.... .....+ ......++|+..+++++..+|++++ ||+|+
T Consensus 104 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll-LDEPt 158 (229)
T 2pze_A 104 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL-LDSPF 158 (229)
T ss_dssp HHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE-EESTT
T ss_pred HHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE-EECcc
Confidence 11 1111100 000011 2345569999999999988998777 99998
No 153
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.56 E-value=2.1e-07 Score=74.35 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+.+.+|+|.|+-||||||+++.|++.+.
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999998774
No 154
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.56 E-value=1.2e-08 Score=79.55 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=63.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
++.+.++.+++|+||+|||||||++.|+ |+...+.|.+ ++..+....+ ...++.+.+..
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~---Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~ 115 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQ---NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY 115 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHh---cCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhh
Confidence 5667899999999999999999999999 5433222222 1111111000 01123333332
Q ss_pred CC-CCCH-HHHHHH-----HHHHHHhcC-CCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPS-EVTIKL-----LQKAMEESG-NDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~-~~~~~~-----l~~~l~~~~-~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. .... +..... +.+.+..-. +-...++ .+...++|+..+++++..+|+++| ||+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll-LDEPt 184 (271)
T 2ixe_A 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI-LDNAT 184 (271)
T ss_dssp TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence 21 1111 111111 122222210 0001122 244569999999999999998877 99998
No 155
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.54 E-value=3.3e-07 Score=78.01 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=52.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg------~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (182)
...++.+++|+|++|||||||++.|++.++ +..++.+++... ......... .+.... ...+...++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~--~~r~~~-----~r~i~~v~q 436 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSK--AHRDVN-----VRRIGFVAS 436 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSH--HHHHHH-----HHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCH--HHHHHH-----HHHHHHHHH
Confidence 356789999999999999999999999884 334676655322 111000000 000000 001111222
Q ss_pred HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCC-CCcEEEEEecCHHHHHHHHH
Q 030176 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL 142 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~-~~~~vI~ld~~~~~l~~R~~ 142 (182)
. +.. ....++..+.......+......+.. ...++|||++|.+++.+|..
T Consensus 437 ~-l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 437 E-ITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR 487 (552)
T ss_dssp H-HHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred H-HHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence 2 211 23344444332223333333333311 13479999999999999975
No 156
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.51 E-value=3e-08 Score=78.02 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=63.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcCCCCCHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEGKIVPSEVTIKL 88 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
++.+.++.+++|+|++|||||||++.|+ |+...+.|.+..+. .. ...... ...+.+. +.........+.
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~-tv~enl~-~~~~~~~~~~~~ 132 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIM---GELEPSEGKIKHSGRISFCSQNSWIMPG-TIKENII-GVSYDEYRYRSV 132 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHT---TSSCEEEEEEECCSCEEEECSSCCCCSS-BHHHHHH-TTCCCHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCcEEEECCEEEEEeCCCccCcc-cHHHHhh-CcccchHHHHHH
Confidence 4567899999999999999999999999 65444444332210 00 000011 2222232 222222211111
Q ss_pred HH-----HHHHhcC-CCc-E---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 89 LQ-----KAMEESG-NDK-F---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 89 l~-----~~l~~~~-~~~-~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. +.+.... ... . -...+...++|+..+++++..+|++++ ||+|+
T Consensus 133 ~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll-LDEPt 187 (290)
T 2bbs_A 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL-LDSPF 187 (290)
T ss_dssp HHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEE-EESTT
T ss_pred HHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEE-EECCc
Confidence 11 1121110 000 0 012355669999999999988998777 99998
No 157
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.49 E-value=1.3e-07 Score=80.43 Aligned_cols=36 Identities=36% Similarity=0.352 Sum_probs=29.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
.+.++.+++|+||+|||||||++.|+ |....+.|.+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~---Gl~~p~~G~i 56 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILA---GEIIPNFGDP 56 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHT---TSSCCCTTCT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCCcc
Confidence 45788999999999999999999999 6555554443
No 158
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.45 E-value=1.2e-08 Score=86.64 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=58.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-------cCChhhHHHHHHHHc--CCC--CCHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-------SGSENGTMIQNMIKE--GKI--VPSEVTI 86 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~-------~~~~~~~~~~~~~~~--~~~--~~~~~~~ 86 (182)
+.++.+++|+|++|||||||++.|+ |+...+.|.+...... ..........+.+.. ... .....+.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILV---GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT---TSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 4688999999999999999999999 6544444443211000 000000111111111 010 0111111
Q ss_pred HHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 87 ~~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+++........... -+......++|+..+++++..+|+++| ||+|+
T Consensus 368 ~~l~~~~l~~~~~~-~~~~LSGGq~QRv~iAraL~~~p~lLl-LDEPT 413 (538)
T 3ozx_A 368 EVTKRLNLHRLLES-NVNDLSGGELQKLYIAATLAKEADLYV-LDQPS 413 (538)
T ss_dssp HTTTTTTGGGCTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEE-EESTT
T ss_pred HHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 11111111100000 122344569999999999999999887 99998
No 159
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.42 E-value=6.1e-08 Score=83.20 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=65.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++.+++|+||+|||||||++.|+..+ ..+.|++ ++.......+ ...++.+.+..
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~---~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~ 439 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLI---DPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW 439 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSS---CCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhc
Confidence 4567889999999999999999999998433 2222222 1222211000 11123333332
Q ss_pred CC-CCCHHHHHHHHHH-----HHHh-cCCCcEEEeC----CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPSEVTIKLLQK-----AMEE-SGNDKFLIDG----FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~~~~~~~l~~-----~l~~-~~~~~~ildg----~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ...++.+.+.++. .+.. +.+-...++. ....++|+..+++++..+|+++| ||+|+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ill-lDEpt 507 (587)
T 3qf4_A 440 GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI-LDDCT 507 (587)
T ss_dssp TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEE-EESCC
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEE-EECCc
Confidence 32 2334433333322 2222 1121222332 34459999999999988999888 99997
No 160
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.42 E-value=1.4e-08 Score=87.34 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=65.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHc--CC--hhhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKS--GS--ENGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~--~~--~~~~~~~~~~~~ 76 (182)
+++++++.+++|+||+|||||||++.|+ |+...+.|++ ++..... +. -...+..+.+..
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~---g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 440 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLL---RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAY 440 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHT---TSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh---cCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhh
Confidence 5567899999999999999999999999 4432222222 1111110 00 011133333333
Q ss_pred CCC----CCHHHHHHHHHHH-----HHh-cCCCcEEE----eCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GKI----VPSEVTIKLLQKA-----MEE-SGNDKFLI----DGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~~----~~~~~~~~~l~~~-----l~~-~~~~~~il----dg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.. ..++.+.+.++.. +.. +.+....+ ......++|+..+++++..+|++++ ||+|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ill-lDEpt 511 (595)
T 2yl4_A 441 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL-LDEAT 511 (595)
T ss_dssp TSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEE-EECCC
T ss_pred cCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence 321 3444444444332 111 11111112 1244569999999999988898887 99997
No 161
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.40 E-value=1.7e-08 Score=86.55 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=65.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++.+++|+||+||||||+++.|+ |+...+.|++ +++......+ ...+..+.+..
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~ 437 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTT---TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGG
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHh---cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhc
Confidence 4567899999999999999999999998 4333322222 1111110000 11123333332
Q ss_pred CC-CCCHHHHHHHHHHH-----HHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPSEVTIKLLQKA-----MEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~~~~~~~l~~~-----l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ...++.+.+.++.. +.. +.+....+. .....++|+..+++++..+|++++ ||+|+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ill-lDEpt 505 (578)
T 4a82_A 438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI-LDEAT 505 (578)
T ss_dssp GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence 22 23344444443321 211 111111122 234569999999999988999887 99997
No 162
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.40 E-value=1.3e-06 Score=81.24 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=70.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC----cEecH---H----HHHHHHHHcCCh----hhHHHHHHHHcCC-
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLSA---G----DLLRAEIKSGSE----NGTMIQNMIKEGK- 78 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~----~~~~~---~----di~~~~~~~~~~----~~~~~~~~~~~~~- 78 (182)
++.++++..++|+|++|||||||++.|...+.. ..++. . +.++..+....+ ...++.+-+.-+.
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence 556789999999999999999999999855421 11111 0 112222221111 1122222233333
Q ss_pred CCCHHHHHHHHHHH-----HHh-cCCCcEEEe-C---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 79 IVPSEVTIKLLQKA-----MEE-SGNDKFLID-G---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 79 ~~~~~~~~~~l~~~-----l~~-~~~~~~ild-g---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...++.+.+.++.. +.. +++....+. + ....++|+..++|++-.+|+++| ||+++
T Consensus 518 ~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili-LDE~t 582 (1321)
T 4f4c_A 518 GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL-LDEAT 582 (1321)
T ss_dssp TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE-EESTT
T ss_pred cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE-Eeccc
Confidence 35566666655432 222 233233332 1 34559999999999989999888 99986
No 163
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.40 E-value=7e-08 Score=89.67 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=67.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++..++|+|++|||||||++.|.+-+ .++.|.+ ++..+...++ ..-++++-+.-
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~---~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~ 1175 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFY---DTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY 1175 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSS---CCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSS
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCc---cCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhc
Confidence 5567899999999999999999999998443 2322222 1111111010 11112221211
Q ss_pred C---CCCCHHHHHHHHHHH-----HHh-cC-CCcEEEeC---CCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 G---KIVPSEVTIKLLQKA-----MEE-SG-NDKFLIDG---FPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~---~~~~~~~~~~~l~~~-----l~~-~~-~~~~ildg---~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+ ....++.+.+.++.. +.. ++ .+..|-++ +...++|+.+++|++-.+|.++| ||+++
T Consensus 1176 gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILi-LDEaT 1245 (1321)
T 4f4c_A 1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL-LDEAT 1245 (1321)
T ss_dssp SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEE-EESCC
T ss_pred cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEE-EeCcc
Confidence 2 234566666555432 222 22 23332222 44569999999999988898877 99985
No 164
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.39 E-value=3e-08 Score=84.97 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=65.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHc--CC--hhhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKS--GS--ENGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~--~~--~~~~~~~~~~~~ 76 (182)
+++++++.+++|+||+|||||||++.|+..+ ..+.|++ ++..... +. -...+..+.+..
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFY---DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY 439 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTT---CCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc---CCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhc
Confidence 5567899999999999999999999999443 2222221 1111110 00 011133333333
Q ss_pred CC--CCCHHHHHHHHHH-----HHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK--IVPSEVTIKLLQK-----AMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~--~~~~~~~~~~l~~-----~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ...++.+.+.++. .+.+ +++-...++ .....++|+..+++++..+|++++ ||+|+
T Consensus 440 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill-lDEpt 508 (582)
T 3b60_A 440 ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI-LDEAT 508 (582)
T ss_dssp TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE-EETTT
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE-EECcc
Confidence 32 2344444444332 1211 111111121 234569999999999988898877 99997
No 165
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.39 E-value=3.9e-08 Score=84.69 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHHHcC---CCCCHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMIKEG---KIVPSEVTIKL 88 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 88 (182)
+.++.+++|.||+|||||||++.|+ |+...+.|.+.... .. .......+..+.+... .....+.+.++
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 455 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH---TSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh---cCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 4678999999999999999999999 55444444432100 00 0000000111111000 00011222223
Q ss_pred HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 89 l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+........... -+......++|+..+++++..+|+++| ||+|+
T Consensus 456 l~~~~l~~~~~~-~~~~LSGGe~QRv~iAraL~~~p~lLl-LDEPt 499 (607)
T 3bk7_A 456 LKPLGIIDLYDR-NVEDLSGGELQRVAIAATLLRDADIYL-LDEPS 499 (607)
T ss_dssp HHHHTCTTTTTS-BGGGCCHHHHHHHHHHHHHTSCCSEEE-EECTT
T ss_pred HHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence 322211111011 122345569999999999999999877 99998
No 166
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.37 E-value=4.7e-07 Score=76.91 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d 54 (182)
.+.++.+++|+|++|||||||++.|+ |....+.|.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~---Gl~~p~~G~ 77 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILA---GQLIPNLCG 77 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHH---TSSCCCTTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCCc
Confidence 46789999999999999999999999 655555444
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.36 E-value=2.2e-07 Score=68.59 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=25.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.+++.+|+|+|++||||||+++.|++.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678899999999999999999999776
No 168
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.35 E-value=1.8e-08 Score=86.70 Aligned_cols=116 Identities=17% Similarity=0.258 Sum_probs=63.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCCh----hhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGSE----NGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~~----~~~~~~~~~~~ 76 (182)
+++++++.+++|+||+|||||||++.|+ |+...+.|++ ++.......+ ...++.+.+..
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~---g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~ 451 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLM---RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY 451 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHT---TSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh---cCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhc
Confidence 4567899999999999999999999998 4333322222 1222111000 11122232332
Q ss_pred CC-CCCHHHHHHHHH-----HHHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK-IVPSEVTIKLLQ-----KAMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~-~~~~~~~~~~l~-----~~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ...++.+.+.++ +.+.. +.+....+. .....++|+..+++++..+|+++| ||+|+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill-lDEpt 519 (598)
T 3qf4_B 452 GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI-LDEAT 519 (598)
T ss_dssp SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE-ECCCC
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence 22 122233333221 11111 111111111 244569999999999988999887 99997
No 169
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1e-07 Score=82.09 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH-----cCChhhHHHHHHH-H--cCCCCCHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK-----SGSENGTMIQNMI-K--EGKIVPSEVTIKLLQ 90 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~-----~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~ 90 (182)
++.+++|+|++|||||||++.|+ |+...+.|..+... .. ..........+.+ . .+.....+...+++.
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~---Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~ 453 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLA---GALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVK 453 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHH---TSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHH
T ss_pred cceEEEEECCCCCcHHHHHHHHh---cCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHH
Confidence 34789999999999999999999 55444433210000 00 0000000011111 1 111122233333333
Q ss_pred HHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 91 ~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
........+. -+......++|+..+++++..+|++++ ||+|+
T Consensus 454 ~l~l~~~~~~-~~~~LSGGqkQRv~iAraL~~~p~lLl-LDEPT 495 (608)
T 3j16_B 454 PLRIDDIIDQ-EVQHLSGGELQRVAIVLALGIPADIYL-IDEPS 495 (608)
T ss_dssp HHTSTTTSSS-BSSSCCHHHHHHHHHHHHTTSCCSEEE-ECCTT
T ss_pred HcCChhhhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEE-EECCC
Confidence 3221111011 122344569999999999999999888 99998
No 170
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.29 E-value=6e-07 Score=77.29 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=29.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d 54 (182)
.+.++.+++|+|++|||||||++.|+ |....+.|.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~---Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILA---GQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHT---TSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHh---CCCCCCCCc
Confidence 46789999999999999999999999 655555444
No 171
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.27 E-value=5.6e-07 Score=65.51 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.++.+++|+||+|||||||++.|++.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999998763
No 172
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.27 E-value=5.4e-08 Score=82.69 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=56.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HH--cC---ChhhHHHHHHHHcC---CCCCHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK--SG---SENGTMIQNMIKEG---KIVPSEVTIKL 88 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~-~~--~~---~~~~~~~~~~~~~~---~~~~~~~~~~~ 88 (182)
+.++.+++|+|++|||||||++.|+ |....+.|.+.... .. .+ .....+..+.+... .....+ .
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~---Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~----~ 381 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLA---GVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNF----Y 381 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH---TSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH----H
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH----H
Confidence 3678999999999999999999999 54444433332100 00 00 00000001110000 000011 1
Q ss_pred HHHHHHhcCCCcE---EEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 89 LQKAMEESGNDKF---LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 89 l~~~l~~~~~~~~---ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+.+.+..-.-... -+......++|+..+++++..+|+++| ||+|+
T Consensus 382 ~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl-LDEPt 429 (538)
T 1yqt_A 382 KTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL-LDEPS 429 (538)
T ss_dssp HHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE-EECTT
T ss_pred HHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE-EeCCc
Confidence 1111111110000 011234459999999999999998877 99998
No 173
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.23 E-value=4.6e-07 Score=72.15 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
+.+|+|+||+|||||||++.|++.++..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 46899999999999999999999999888887654
No 174
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.20 E-value=7.3e-07 Score=67.02 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=24.5
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+-++.++++.+++|+||+|||||||++.|+..+
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346677889999999999999999999999765
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.18 E-value=1.2e-06 Score=65.02 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=26.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+.+.++.+|+|+||+|||||||++.|.+.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456788999999999999999999998764
No 176
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.18 E-value=1.3e-06 Score=62.53 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=28.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+.++.+++|.||+|||||||++.|+..+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5567899999999999999999999999766
No 177
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.17 E-value=4e-07 Score=84.40 Aligned_cols=115 Identities=21% Similarity=0.251 Sum_probs=64.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH--------------HHHHHHcCC-----hhhHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL--------------LRAEIKSGS-----ENGTMIQNMIK 75 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di--------------~~~~~~~~~-----~~~~~~~~~~~ 75 (182)
+++++++.+++|+|++|||||||++.|...+ ..+.|.+ ++..+.... -.+ ++.+-+.
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~---~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~ 485 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLY---DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIR 485 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSS---CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHh
Confidence 4567889999999999999999999998444 2222221 122221100 012 2222222
Q ss_pred cC-CCCCHHHHHHHHHH-----HHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 76 EG-KIVPSEVTIKLLQK-----AMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 76 ~~-~~~~~~~~~~~l~~-----~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
.+ ....++.+.+.++. .+.. +.+....+. .....++|+..+++++..+|+++| ||+|+
T Consensus 486 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ili-LDEpt 554 (1284)
T 3g5u_A 486 YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL-LDEAT 554 (1284)
T ss_dssp HHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEE-EESTT
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEE-EECCC
Confidence 22 23444444443332 1222 111111121 234559999999999988898888 99997
No 178
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.17 E-value=6.2e-07 Score=71.86 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
+.+|+|+||+|||||||++.|++.++..+++.|++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 36899999999999999999999999877777665
No 179
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.16 E-value=1.7e-06 Score=66.24 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~ 61 (182)
.+|+|+|++||||||+++.|.+.+|+.++..++.+++...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5799999999999999999988899999998888776654
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.15 E-value=3e-06 Score=61.37 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=33.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CcEecHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA 58 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l----g--~~~~~~~di~~~ 58 (182)
++...++..++|+||+||||||+++.++..+ | ..+++..+++..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3445668899999999999999999998776 4 345566555443
No 181
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.14 E-value=1.2e-06 Score=64.92 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+++.+++|+||+|||||||++.|...+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999998765
No 182
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.13 E-value=3.7e-07 Score=84.66 Aligned_cols=116 Identities=19% Similarity=0.292 Sum_probs=64.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH----------HHHc------CC--hhhHHHHHHHHc
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA----------EIKS------GS--ENGTMIQNMIKE 76 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~----------~~~~------~~--~~~~~~~~~~~~ 76 (182)
+++++++.+++|+|++|||||||++.|. |+...+.|.+..+ .... +. -...++.+-+..
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~ 1129 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHT---TSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh---cCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhc
Confidence 4567899999999999999999999999 4433333322111 1110 00 011122222222
Q ss_pred CC---CCCHHHHHHHHHHH-----HHh-cCC-CcEEEe---CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 77 GK---IVPSEVTIKLLQKA-----MEE-SGN-DKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 77 ~~---~~~~~~~~~~l~~~-----l~~-~~~-~~~ild---g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
+. ...++.+.+.++.. +.. +.+ +..+-+ .....++|+..+++++..+|+++| ||+|+
T Consensus 1130 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi-LDEpT 1199 (1284)
T 3g5u_A 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL-LDEAT 1199 (1284)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE-EESCS
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 21 23444444444332 111 111 111111 134459999999999988898888 99996
No 183
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.12 E-value=1.6e-06 Score=64.42 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=24.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..+.++.+++|.||+|||||||++.|+..+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678899999999999999999999997663
No 184
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.12 E-value=1.8e-06 Score=65.13 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..++++.+++|+||+|||||||++.|+..+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3568899999999999999999999997764
No 185
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.12 E-value=3.5e-06 Score=66.10 Aligned_cols=38 Identities=37% Similarity=0.720 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDL 55 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di 55 (182)
...|..++|.||||+|||++++.+++.+|. ..++.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 456678899999999999999999999985 45666555
No 186
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.10 E-value=1.3e-06 Score=69.32 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di 55 (182)
++++|+|+||+|||||||+..|++.++...++.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 467899999999999999999999998776666543
No 187
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.05 E-value=2.5e-06 Score=67.45 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d 54 (182)
..+.+|+|+||+|||||||+..|++.++...++.|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 446789999999999999999999999876666543
No 188
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.05 E-value=2.5e-06 Score=62.20 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
+.++|+||+|||||||++.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999988763
No 189
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.05 E-value=3.6e-06 Score=66.80 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..++.+++|+|++|||||||++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 6788999999999999999999999765
No 190
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.01 E-value=3.9e-06 Score=66.34 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=28.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.++++.+++|+||+|||||||++.|+..+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 5678999999999999999999999999766
No 191
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.98 E-value=5.2e-06 Score=64.56 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=25.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~ 48 (182)
.++++ ++|.|||||||||+++.|+..++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCCC
Confidence 34444 9999999999999999999988743
No 192
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.98 E-value=3e-06 Score=65.50 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=62.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHH-------HHHHHHcCCh----hhHHHHHHHHcCC-C
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDL-------LRAEIKSGSE----NGTMIQNMIKEGK-I 79 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di-------~~~~~~~~~~----~~~~~~~~~~~~~-~ 79 (182)
++.+.++.+++|+||+|||||||++.|+..+. -..++..++ ++.......+ ...+..+.+..+. .
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~ 119 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC
Confidence 56778999999999999999999999994321 111211111 0110110000 0112223222221 1
Q ss_pred CCHHHHHHHHHH-----HHHh-cCCCcEEEe----CCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 80 VPSEVTIKLLQK-----AMEE-SGNDKFLID----GFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 80 ~~~~~~~~~l~~-----~l~~-~~~~~~ild----g~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
...+.+.+++.. .+.. .......++ .....++|+..+++++..+|+++| ||+|+
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll-LDEPt 183 (260)
T 2ghi_A 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI-FDEAT 183 (260)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE-EECCC
T ss_pred CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE-EECcc
Confidence 223333333221 1111 011111122 344569999999999988998777 99997
No 193
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.97 E-value=5.8e-06 Score=64.90 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=26.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
...++.+|+|+|++||||||+++.|++.++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346778999999999999999999998775
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.96 E-value=4e-05 Score=59.88 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+.-++|+||||+|||++++.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445579999999999999999999887
No 195
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=8.2e-06 Score=67.45 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
-.+.|+=|++.||||||||++|+++|.+++..++
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 3566788999999999999999999999986543
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.93 E-value=8.6e-06 Score=60.74 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=31.1
Q ss_pred ccccCchhhhhhhc--CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 3 TVVETPVKEADATV--TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.+.+.....+... .++++.+++|+|+|||||||+++.++..+
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33444444444433 36788999999999999999999998543
No 197
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=9.4e-06 Score=67.00 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
-..+|+=+++.||||||||++|+++|.+++..++
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~ 235 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI 235 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 3456777999999999999999999999986543
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=9.4e-06 Score=67.17 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=29.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
-..+|+=|++.||||||||++|+++|.+++..++
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3566788999999999999999999999986654
No 199
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.91 E-value=5.8e-06 Score=67.64 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d 54 (182)
+++|+|+||+|||||||+..|++.++...++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4689999999999999999999999977776654
No 200
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.91 E-value=0.00019 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++|+|++|+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999875
No 201
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.90 E-value=1e-05 Score=65.78 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=31.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~ 51 (182)
+...+++.+++|.|||||||||+++.|+..++...+.
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3467888999999999999999999999888755443
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=9.3e-06 Score=66.45 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
-.++|+=+++.||||||||++|+++|.+.+..++
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 3456677999999999999999999999986654
No 203
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.88 E-value=8.3e-06 Score=61.64 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=24.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
-++++.+++|+||+|||||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999999999999887
No 204
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.88 E-value=5.9e-06 Score=69.66 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=27.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
..++.+|+|+|.+||||||+++.|+++|+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999986
No 205
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.88 E-value=1.1e-05 Score=63.67 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=25.8
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...++.+++|+|++||||||+++.|+..+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999765
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.87 E-value=1.3e-05 Score=63.05 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEI 60 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~~~~~ 60 (182)
..++.-++|+||||+||||+++.++..++.. .++..++.....
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 4567789999999999999999999998754 456666655443
No 207
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.85 E-value=6.9e-06 Score=61.31 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=25.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++++.+++|+||+||||||+++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999998643
No 208
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.85 E-value=1.5e-05 Score=60.71 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
..+.-++|+||||+|||++++.+++.++..++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 44566899999999999999999999885543
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.85 E-value=1.6e-05 Score=60.80 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
+.-++|+||||+||||+++.++..++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~ 73 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCE
Confidence 44589999999999999999999987543
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.84 E-value=1.2e-05 Score=62.09 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..++.+++|+||+||||||+++.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 6788999999999999999999998654
No 211
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.83 E-value=1.3e-05 Score=61.05 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=25.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCC--cEecHHHH
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFGY--THLSAGDL 55 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di 55 (182)
++|.|||||||||+++.++..++. ..++..++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 999999999999999999988753 34554444
No 212
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.83 E-value=1.2e-05 Score=70.04 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQC 38 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla 38 (182)
-+++++++.+++|+||+|||||||+
T Consensus 37 vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 37 IDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cEEEECCCCEEEEECCCCCCHHHHh
Confidence 3566789999999999999999996
No 213
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=1.6e-05 Score=61.96 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
++.-++|+||||+||||+++.+++.++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 467899999999999999999999988544
No 214
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.82 E-value=1.7e-05 Score=61.39 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
..+.-++|+||||+||||+++.+++.++..++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45667999999999999999999999986543
No 215
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.80 E-value=5.1e-05 Score=59.72 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..+.+|+|-|.-||||+|..+.|.+.++
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ld 111 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMN 111 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999999998885
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.80 E-value=1.6e-05 Score=63.40 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~ 48 (182)
+..++|+||||+||||+++.++..++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3568999999999999999999998643
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.6e-05 Score=66.10 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=29.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
-..+|+=|+|.||||||||++|+++|.+++..++
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi 272 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFI 272 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE
Confidence 3567788999999999999999999999986653
No 218
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=2e-05 Score=64.93 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=29.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
-.+.|+=|++.||||||||++|+++|.+++..++
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE
Confidence 3566778999999999999999999999986654
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.79 E-value=1.3e-05 Score=56.61 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++..++|+|++|||||||++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999766
No 220
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.79 E-value=1.3e-05 Score=58.93 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.+++|+|++||||||+++.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3578999999999999999999766
No 221
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.79 E-value=1.8e-05 Score=63.88 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=25.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...++.+++|+|++||||||+++.|+..+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45678999999999999999999999765
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.76 E-value=1.2e-05 Score=59.99 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+.++.+++|.||+|||||||++.|+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46788999999999999999999983
No 223
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.75 E-value=0.00012 Score=60.80 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
.-++|+||||+||||+++.+++.++..++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 56899999999999999999999876543
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.74 E-value=2.3e-05 Score=62.51 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+|.+++|+||+||||||+++.|+..+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999765
No 225
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.74 E-value=2.4e-05 Score=60.29 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=28.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
...+.-++|+||||+|||++|+.+++.++..++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345678999999999999999999999886543
No 226
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.74 E-value=2.4e-05 Score=60.60 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=25.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCC--cEecHHHH
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFGY--THLSAGDL 55 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg~--~~~~~~di 55 (182)
++|+|||||||||+++.|+..++. ..++..++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 899999999999999999988753 34454444
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.73 E-value=2.1e-05 Score=62.08 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+++|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.73 E-value=2.5e-05 Score=65.54 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=27.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++...++.+++|+|++||||||+++.|+..+
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3456788999999999999999999998765
No 229
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.73 E-value=3e-05 Score=57.40 Aligned_cols=30 Identities=23% Similarity=0.096 Sum_probs=25.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
-++++.+++|+|+|||||||+++.++..-+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 368899999999999999999999986333
No 230
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.72 E-value=2.4e-05 Score=62.87 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL 55 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di 55 (182)
.+.-++|+||||+|||++|+.|++.++..+ ++..++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 456789999999999999999999998554 444443
No 231
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.72 E-value=3.1e-05 Score=61.31 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL 55 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di 55 (182)
++.-++|+||||+|||++++.+++.++..+ ++..++
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 456799999999999999999999988544 455454
No 232
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.71 E-value=1.8e-05 Score=58.68 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.7
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~ 52 (182)
+.......+..|+|+||+|+||||++..|+++.+ ..++.
T Consensus 26 Ha~~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 26 HGVLVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp ESEEEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred eEEEEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 3333334578899999999999999999998876 55544
No 233
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.69 E-value=0.0013 Score=51.75 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~ 53 (182)
+..++|+|++|+||||+++.+++..+..+++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 378999999999999999999988876666553
No 234
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.69 E-value=3.1e-05 Score=55.50 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+..++|+|++|+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999886
No 235
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.68 E-value=3.4e-05 Score=61.69 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=27.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++...++.+++|+|+||||||||++.|+..+
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567889999999999999999999998654
No 236
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.68 E-value=3.4e-05 Score=60.22 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...++++.+++|+|+|||||||+++.|+..+
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999988654
No 237
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.68 E-value=2e-05 Score=63.53 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.6
Q ss_pred CCCC--CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 17 TVKK--PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 17 ~~~~--~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
...+ +..++|+|++|||||||++.|+..+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4456 889999999999999999999977653
No 238
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.67 E-value=3.7e-05 Score=61.00 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCc
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYT 48 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l-g~~ 48 (182)
.++.-++|.||||+|||++++.+++.+ +..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 73 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNST 73 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCc
Confidence 445789999999999999999999988 543
No 239
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.66 E-value=1e-05 Score=67.45 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 14 ~~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++...++.+++|+||+|||||||++.|+..
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3556789999999999999999999999853
No 240
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.64 E-value=3.6e-05 Score=63.77 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~ 51 (182)
++.-|+|.||||+||||+++.|++.++..++.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 34569999999999999999999999876543
No 241
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.64 E-value=0.0013 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++|+||+|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 242
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=0.00036 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg 46 (182)
-++|+||||+||||+++.+++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998764
No 243
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.64 E-value=3.8e-05 Score=57.31 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+..++|+||||+||||+++.+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998764
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.64 E-value=4.3e-05 Score=60.40 Aligned_cols=28 Identities=36% Similarity=0.738 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..++.+|+|+|++||||||++..|+..+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3567899999999999999999999766
No 245
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.63 E-value=4.4e-05 Score=59.41 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
.+.-++|+||||+|||++++.+++.++...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~ 78 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345688999999999999999999987543
No 246
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.62 E-value=4.4e-05 Score=61.39 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL 55 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di 55 (182)
++.-++|+||||+|||++|+.+++.++..+ ++..++
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 345689999999999999999999998654 455444
No 247
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=9.2e-05 Score=54.28 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRA 58 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l---g~--~~~~~~di~~~ 58 (182)
..++|+|++|+||||+++.++..+ +. .+++..++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 678999999999999999999876 33 33565555433
No 248
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.62 E-value=1.5e-05 Score=64.16 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
....|+|+|++||||||+++.|++.+++.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345699999999999999999999988665
No 249
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.61 E-value=4.1e-05 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+..++|+|++|+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999887
No 250
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.61 E-value=4.1e-05 Score=55.26 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+++.++ +.+|+|++||||||++++|.-.++
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445555 899999999999999999986664
No 251
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.60 E-value=4.6e-05 Score=55.08 Aligned_cols=25 Identities=32% Similarity=0.166 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++++|+|++||||||++..|++.+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 252
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.60 E-value=1.9e-05 Score=61.28 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA 58 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~ 58 (182)
..++|+|++|||||||.+.|+.. ...+.+.+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~---~~~~~G~i~~~ 36 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS---QVSRKASSWNR 36 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH---HC---------
T ss_pred eEEEEECCCCCCHHHHHHHHhCC---CCCCCCccccC
Confidence 36899999999999999999944 44455555443
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.59 E-value=4.8e-05 Score=61.42 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
.+.-++|+||||+|||++|+.+++.++..++
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3456899999999999999999999975443
No 254
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.59 E-value=5.6e-05 Score=60.78 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
..+.-++|+||||+|||++++.+++.++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 3466799999999999999999999998654
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=3.3e-05 Score=58.06 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=28.2
Q ss_pred hhhhhhc--CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 10 KEADATV--TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 10 ~~~~~~~--~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
...+..+ -++++.+++|+|+|||||||+++.++..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444444 3578899999999999999999999874
No 256
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.57 E-value=2.1e-05 Score=60.30 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
+.-++|+||||+|||++++.+++.++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 33488999999999999999999887544
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.57 E-value=6e-05 Score=54.71 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++++|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988764
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.56 E-value=5.6e-05 Score=61.29 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..++.+++|+||+||||||+++.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678899999999999999999998654
No 259
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.56 E-value=5.6e-05 Score=56.37 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
++...++|.||||+||||+|..|++.+.-
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44457999999999999999999988753
No 260
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=6.5e-05 Score=63.38 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
.+..++|+||||+||||+++.+++.+++.++
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3468999999999999999999999986654
No 261
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.54 E-value=1.8e-05 Score=63.98 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++...++.+++|+|++||||||+++.|+..+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4456788999999999999999999999654
No 262
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.54 E-value=2.4e-05 Score=56.64 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.+++|+|++|||||||++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998776
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.53 E-value=6.6e-05 Score=60.54 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++.+++|+||+||||||+++.|+..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 556699999999999999999998654
No 264
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.53 E-value=5.5e-05 Score=62.37 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.8
Q ss_pred hhhcCCCCCeE--EEEEcCCCCChHHHHHHHH
Q 030176 13 DATVTVKKPTV--VFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 13 ~~~~~~~~~~~--i~I~G~~GsGKSTla~~La 42 (182)
+-++.+.++.+ ++|+|++|||||||.+.|+
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 34567788988 9999999999999999998
No 265
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.52 E-value=0.0027 Score=52.44 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----CC--cEecHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF-----GY--THLSAGDLL 56 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l-----g~--~~~~~~di~ 56 (182)
+.-++|+||||+||||+++.++..+ +. .+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 4568999999999999999999876 43 455665543
No 266
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.52 E-value=0.00011 Score=57.97 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLL 56 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l---g--~~~~~~~di~ 56 (182)
.+.-++|+||||+||||+++.+++.+ + +.+++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34568999999999999999999877 4 4456665553
No 267
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.51 E-value=6.8e-05 Score=55.58 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+..++|+|++|+||||+++.+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999998774
No 268
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.51 E-value=1.8e-05 Score=66.21 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+.+ .+++|+||+|||||||++.|+..+
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 456677 999999999999999999999443
No 269
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.51 E-value=4.4e-05 Score=60.07 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=28.1
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~ 57 (182)
+....+.+++|.|++|||||||.+.|+ |....+.+++..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~---g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAIN---PGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHS---TTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhc---ccccccccceec
Confidence 344567899999999999999999999 777777777654
No 270
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.51 E-value=8.2e-05 Score=61.78 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
++.-++|.||||+|||++|+.+++.++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 446789999999999999999999998
No 271
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.50 E-value=7.6e-05 Score=59.11 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
+.-++|+|+||+|||++++.+++.++..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~ 83 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANI 83 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 34589999999999999999999987554
No 272
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.49 E-value=8.2e-05 Score=63.21 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~ 48 (182)
++..++|+|||||||||+++.++..++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 67799999999999999999999988644
No 273
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.48 E-value=0.00011 Score=61.40 Aligned_cols=30 Identities=20% Similarity=0.456 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
+.-++|+||||+||||+++.++...+.+++
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~ 78 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFF 78 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 344889999999999999999999886543
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.48 E-value=7.9e-05 Score=58.56 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++.+++|+|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998654
No 275
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.47 E-value=0.0001 Score=58.56 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=25.4
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...++.+|+|+|++|+||||++..|+..+
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999998765
No 276
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.46 E-value=8.8e-05 Score=59.32 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
++..++|+||||+|||++++.+++.++.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999999873
No 277
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.46 E-value=6.4e-05 Score=58.21 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++++.+++|.|+||||||||+..++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999999999999988853
No 278
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.44 E-value=0.0001 Score=60.71 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.++.+++|+||+||||||+++.|+..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5678999999999999999999997763
No 279
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.44 E-value=0.00012 Score=59.47 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
.+.-++|+||||+|||++++.+++.++..++
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 3567999999999999999999999886543
No 280
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.44 E-value=5.7e-05 Score=60.94 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcE-ecHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLL 56 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~-~~~~di~ 56 (182)
.++.+++|+|+||||||||++.|+ |... ...+++.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~---g~~~~~~~G~I~ 248 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALL---GLQNEILTNDVS 248 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHH---CCSSCCCCC---
T ss_pred cCCCEEEEECCCCccHHHHHHHHh---ccccccccCCcc
Confidence 357899999999999999999999 6555 5555553
No 281
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.0001 Score=57.54 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..++|+||||+||||+++.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999886
No 282
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.42 E-value=0.00011 Score=60.75 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCc--EecHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYT--HLSAGDLLRA 58 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l-g~~--~~~~~di~~~ 58 (182)
.++.-++|+||||+|||++++.++..+ +.. .++..++...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 345779999999999999999999988 543 3455555433
No 283
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.41 E-value=9.1e-05 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.-++|+|+||+|||++|+.+++..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999998764
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.00011 Score=55.16 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++++.+++|+|+|||||||++..++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999999998777654
No 285
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.41 E-value=0.00049 Score=57.82 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..+.+|+|-|.-||||+|..+.|.+.++
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~ 68 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMD 68 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcC
Confidence 5689999999999999999999999885
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.41 E-value=9.5e-05 Score=65.47 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=31.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL 55 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di 55 (182)
..+|+=|+|.||||+|||+|++.+|.++|... ++..++
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 45677899999999999999999999998654 455554
No 287
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.41 E-value=0.0011 Score=52.68 Aligned_cols=143 Identities=9% Similarity=0.077 Sum_probs=72.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH-----HHHHHHHcCChhhHHHHHHHHc---CCCCCHHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD-----LLRAEIKSGSENGTMIQNMIKE---GKIVPSEVTIKLLQK 91 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~d-----i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 91 (182)
.+..++++||+|+||||+++.+++.+......... ........+...... .+.. +....-+.+.+++..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~---~~~~~~~~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY---TLAPEKGKNTLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE---EECCCTTCSSBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE---EEeccccCCCCCHHHHHHHHHH
Confidence 35679999999999999999999988643211000 001111100000000 0000 112333334444333
Q ss_pred HHHh---cCCCcEEEeCCC-CCHHHHHHHHHHhCCCC-cE-EEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176 92 AMEE---SGNDKFLIDGFP-RNEENRAAFEAVTKIEP-EF-VLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS 165 (182)
Q Consensus 92 ~l~~---~~~~~~ildg~~-~~~~q~~~l~~~~~~~~-~~-vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (182)
.... .....+|+|..- ........+.+.+...| .. +|++....+.+...+..|-..-.-.+.+.++...|+...
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred HhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHh
Confidence 2211 134677888742 23444455666664333 23 343444455566677776544444566777777777543
No 288
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.41 E-value=0.0001 Score=65.42 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL 55 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di 55 (182)
...++..++|+|||||||||+++.|+..++... ++..++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l 274 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHh
Confidence 456778899999999999999999999887543 444443
No 289
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.41 E-value=0.00013 Score=61.38 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCc--EecHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGD 54 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~d 54 (182)
=++|+||||+|||||++.++...+.. .++..+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~ 99 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 99 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence 39999999999999999999987643 344433
No 290
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.40 E-value=0.00012 Score=58.81 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+.+++|+|+||||||||.+.|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999998754
No 291
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.40 E-value=0.0015 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 030176 24 VFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~l 45 (182)
++|+||+|+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 9999999999999999999876
No 292
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.39 E-value=0.00012 Score=58.34 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+..++|+|++|+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 293
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.39 E-value=2.3e-05 Score=61.98 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=24.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL 56 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~ 56 (182)
....++.+++|+|+||||||||.+.|+ |......+++.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~---g~~~~~~G~I~ 205 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAIS---PELGLRTNEIS 205 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHC---C----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhc---cccccccccee
Confidence 345678899999999999999999998 65555555553
No 294
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.38 E-value=6.5e-05 Score=55.15 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=24.7
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
+...++..++|+|++|||||||.+.|.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 667888999999999999999999887
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.37 E-value=8.1e-05 Score=59.81 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..++++.++.|+|+||||||||++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356889999999999999999999999765
No 296
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.37 E-value=2.4e-05 Score=62.50 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=25.3
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+...++.+++|+|++||||||+++.|+..+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344677899999999999999999998544
No 297
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.36 E-value=0.00058 Score=57.38 Aligned_cols=123 Identities=10% Similarity=0.064 Sum_probs=68.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg---~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 95 (182)
..+.+|+|-|.-||||+|..+.|.+.++ +.++....--.... ...+-.+ .... ..
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~----------------~~~yl~R----~~~~--lP 355 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER----------------AQPYLWR----FWRH--IP 355 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH----------------TSCTTHH----HHTT--CC
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh----------------cchHHHH----HHHh--CC
Confidence 4678999999999999999999998874 32222110000000 1111100 0000 11
Q ss_pred cCCCcEEEeCCC-C-----------CH-------HHHHHHHHHh--CCCCcEEEEEecCHHHHHHHHHhhhcc-------
Q 030176 96 SGNDKFLIDGFP-R-----------NE-------ENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQV------- 147 (182)
Q Consensus 96 ~~~~~~ildg~~-~-----------~~-------~q~~~l~~~~--~~~~~~vI~ld~~~~~l~~R~~~R~~~------- 147 (182)
..+..+|-|..- . .. .+...|++.+ ..-+.+.+||+.|.++..+|+.+|...
T Consensus 356 ~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~ 435 (500)
T 3czp_A 356 ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKI 435 (500)
T ss_dssp CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCC
T ss_pred CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCC
Confidence 235556666421 1 11 2222333332 113678999999999999999998641
Q ss_pred CCCCCcchHHHHHHHH
Q 030176 148 RQKLPFSWGVFCLFIM 163 (182)
Q Consensus 148 r~~~~~~~~~~~~~~~ 163 (182)
.+.|-...+.|++|..
T Consensus 436 s~~D~~~~~~w~~y~~ 451 (500)
T 3czp_A 436 TEEDWRNRDKWDQYVD 451 (500)
T ss_dssp CSSTTTGGGGHHHHHH
T ss_pred CHHHHHHHHhHHHHHH
Confidence 2234444566556554
No 298
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.35 E-value=0.00012 Score=57.51 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
+..++|+|++|+||||+++.+++.++..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45689999999999999999999887554
No 299
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.35 E-value=0.00016 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+++++|++||||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999986666554
No 300
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00018 Score=57.59 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+..++|+||+|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 301
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.0001 Score=53.30 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=21.0
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...+...|+|+|.+|+|||||.+.|..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345667899999999999999998874
No 302
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.33 E-value=0.00014 Score=60.16 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=29.3
Q ss_pred hhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 13 ~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+.-+.+.++.+++|.|++|||||||++.|+....
T Consensus 149 d~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 149 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3346778999999999999999999999997663
No 303
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.33 E-value=0.00016 Score=58.11 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=29.9
Q ss_pred hhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 12 ~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+..+.+.++.+++|.|++|||||||.+.|+....
T Consensus 62 ld~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34446778999999999999999999999997654
No 304
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.32 E-value=0.00013 Score=58.27 Aligned_cols=27 Identities=22% Similarity=0.472 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+..++|+||+|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 305
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.32 E-value=6.7e-05 Score=61.68 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+++|+|++|||||||.+.|+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3999999999999999999993
No 306
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00014 Score=57.77 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 030176 24 VFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~l 45 (182)
++|+||||+||||+++.+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999876
No 307
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.28 E-value=0.00017 Score=59.65 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998665
No 308
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.26 E-value=0.00016 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
...++|.|++|||||||++.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999853
No 309
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.25 E-value=0.00024 Score=59.60 Aligned_cols=38 Identities=21% Similarity=0.465 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLL 56 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~--~~~~~di~ 56 (182)
..+.-++|+||||+|||++++.++..++.. .++..++.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 455679999999999999999999998754 45555553
No 310
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.25 E-value=0.00025 Score=56.68 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=25.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+...++.+++|+|+||+||||+++.|+..+
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445778899999999999999999998654
No 311
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.24 E-value=0.00015 Score=57.38 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++|+|++||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 468999999999999999999854
No 312
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.00098 Score=52.48 Aligned_cols=127 Identities=9% Similarity=-0.036 Sum_probs=64.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHHhc---
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEES--- 96 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~--- 96 (182)
.+.+++.||+|+||||+++.|++..+...- ...+.- .+.. +....-+.+.+++......+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-----------~~~d~~-----~l~~~~~~~~id~ir~li~~~~~~p~~~ 81 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPP-----------KASDVL-----EIDPEGENIGIDDIRTIKDFLNYSPELY 81 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC-----------CTTTEE-----EECCSSSCBCHHHHHHHHHHHTSCCSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhc-----------cCCCEE-----EEcCCcCCCCHHHHHHHHHHHhhccccC
Confidence 578999999999999999999975321000 000000 0000 11233333444443332221
Q ss_pred CCCcEEEeCC-CCCHHHHHHHHHHhCCCC-cE-EEEEecCHHHHHHHHHhhhccCCCCCcchHHHHHHHHHh
Q 030176 97 GNDKFLIDGF-PRNEENRAAFEAVTKIEP-EF-VLFFDCSEEEMERRILNRNQVRQKLPFSWGVFCLFIMLS 165 (182)
Q Consensus 97 ~~~~~ildg~-~~~~~q~~~l~~~~~~~~-~~-vI~ld~~~~~l~~R~~~R~~~r~~~~~~~~~~~~~~~~~ 165 (182)
..+.+|+|.. .........+.+.+...| .. +|++....+.+..-+..| .- .-.+.+.++...|+...
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~-~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF-RVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE-EEECCCCHHHHHHHHHH
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE-eCCCCCHHHHHHHHHHH
Confidence 2467778773 233444556666664332 33 333333444555555555 22 22355667777777654
No 313
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.00018 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.758 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 030176 24 VFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~l 45 (182)
++|+||+|+||||+++.+++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999864
No 314
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.23 E-value=2.3e-05 Score=70.56 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=26.1
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++.+++|+|++|||||||++.|+.
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678899999999999999999999993
No 315
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.23 E-value=0.00018 Score=58.04 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++++.++.|.||||||||||+..++..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999988654
No 316
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.23 E-value=0.00012 Score=66.06 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=58.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH-h-CCcEecHHHHHHH-HHHcC---ChhhHHHHHHHHcC-CCCCHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-F-GYTHLSAGDLLRA-EIKSG---SENGTMIQNMIKEG-KIVPSEVTIK 87 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~-l-g~~~~~~~di~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~ 87 (182)
++.+.++.+++|+|++|||||||++.|+.- . |... ...+ +. ..... ........+.+... ... .+.+.+
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~--~~~~-~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~ 530 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPT--QEEC-RTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKD 530 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCC--TTTS-CEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcc--ccce-eEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHH
Confidence 556788999999999999999999999831 0 1100 0000 00 00000 00011111222110 001 222333
Q ss_pred HHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHHhCCCCcEEEEEecCH
Q 030176 88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134 (182)
Q Consensus 88 ~l~~~l~~~~~~~~ildg~~~~~~q~~~l~~~~~~~~~~vI~ld~~~ 134 (182)
++............-+......++|+..+++++..+|+++| ||+|+
T Consensus 531 ~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL-LDEPT 576 (986)
T 2iw3_A 531 KLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL-LDEPT 576 (986)
T ss_dssp HHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE-EESTT
T ss_pred HHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE-EECCc
Confidence 33322110000000123455679999999999988998777 99997
No 317
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.22 E-value=0.00014 Score=57.50 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYT 48 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~ 48 (182)
.-++|.||||+|||++++.+++.++..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 458999999999999999999988754
No 318
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.22 E-value=0.0002 Score=56.32 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.6
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
....+.+++|.|++|||||||.+.|+ ...
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 44567899999999999999999998 543
No 319
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.21 E-value=0.0002 Score=60.52 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.9
Q ss_pred hc-CCCCCeEEEEEcCCCCChHHHHHHH
Q 030176 15 TV-TVKKPTVVFVLGGPGSGKGTQCANI 41 (182)
Q Consensus 15 ~~-~~~~~~~i~I~G~~GsGKSTla~~L 41 (182)
++ .++++.+++|+|+||||||||++.+
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 44 5678999999999999999999983
No 320
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.20 E-value=0.0002 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
..+...|+|+|.+|+|||||.+.|..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 35567899999999999999999873
No 321
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.20 E-value=0.00024 Score=55.92 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~ 50 (182)
..+..+++.||||+||||+++.+++.++..++
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 34467888999999999999999999985543
No 322
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.20 E-value=0.00023 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La 42 (182)
...++|.|++|+|||||.+.|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999999998
No 323
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.18 E-value=0.00017 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYT 48 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~ 48 (182)
+++|+|++||||||+|..|+.. +..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence 3789999999999999999976 643
No 324
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.18 E-value=0.00027 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|++|+|||||.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999984
No 325
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.18 E-value=0.0003 Score=56.47 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.+..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466799999999999999999998776
No 326
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00018 Score=57.17 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-.++..+.|+||||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4577889999999999999999999887
No 327
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.17 E-value=0.00019 Score=51.87 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|+|||||.+.|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3446899999999999999999874
No 328
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.17 E-value=0.00028 Score=62.46 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR 57 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~lg~~~--~~~~di~~ 57 (182)
..+++-+++.||||||||.+|+++|.+.+..+ ++..+++.
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 34566789999999999999999999998655 45555543
No 329
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.16 E-value=0.00022 Score=51.48 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCccccCchhhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 1 MGTVVETPVKEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
||.+-..|........ ...+...|+|+|.+|+|||||.+.|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp ------------------CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence 4555444433322222 224456899999999999999999874
No 330
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.16 E-value=0.00027 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++..|+|+|++|+|||||.+.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999984
No 331
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.16 E-value=0.00031 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+++++|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998765
No 332
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.16 E-value=0.00026 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~ 44 (182)
..++|.|++|||||||++.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999853
No 333
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.16 E-value=0.00029 Score=58.31 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+|.+|+++|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998765
No 334
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.15 E-value=0.00019 Score=58.79 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
++++.++.|+|+||||||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 5788999999999999999999775
No 335
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.15 E-value=0.00032 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.+.+|+||+||||||+..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999887433
No 336
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.14 E-value=0.0003 Score=56.10 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
+..++|+||+|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998863
No 337
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.14 E-value=0.00038 Score=51.47 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.+...++|+|.+||||||+++.|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998775
No 338
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.14 E-value=0.00021 Score=57.73 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=23.3
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++++..+ +.+|+||+||||||+..++.-.
T Consensus 18 ~i~~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 18 DIEFQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 4456555 7889999999999999988743
No 339
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.13 E-value=0.00033 Score=55.21 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC----Cc--EecHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFG----YT--HLSAGDLLRAE 59 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg----~~--~~~~~di~~~~ 59 (182)
+.-++|+||+|+|||+|+..++..+. .. ++...+++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 56789999999999999999987553 33 35555554433
No 340
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.13 E-value=0.00031 Score=50.92 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~ 52 (182)
-.+.-++|+|++|+||||++..|.++ |+..+..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaD 46 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCD 46 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence 35677999999999999999988764 6655544
No 341
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.12 E-value=0.00017 Score=60.79 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...+..++|+||+||||||+++.|+..+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567789999999999999999998554
No 342
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.11 E-value=0.00029 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.....|+|+|.+|+|||||.+.|..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 3456899999999999999999874
No 343
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.10 E-value=0.00024 Score=56.50 Aligned_cols=28 Identities=25% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++++.+++|.||||+|||||+..++...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~ 147 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhC
Confidence 4566788999999999999999998653
No 344
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.10 E-value=0.00011 Score=63.89 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=23.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANI 41 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~L 41 (182)
+++++++.+++|+||+|||||||++.+
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 456788999999999999999999754
No 345
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.10 E-value=8.1e-05 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.-++|+|+||+|||++|+.++...+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 4488999999999999999986655
No 346
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.09 E-value=0.00018 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 030176 24 VFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 24 i~I~G~~GsGKSTla~~La~~lg 46 (182)
++|+|+||+|||++++.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999876
No 347
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.08 E-value=0.00035 Score=50.35 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|.+|||||||.+.|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 446899999999999999998874
No 348
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.07 E-value=0.00033 Score=50.50 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=22.3
Q ss_pred CCccccCchhhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 1 MGTVVETPVKEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
||.+-.+|........ .......|+|+|.+|+|||||.+.|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHc
Confidence 5555555443322222 122346899999999999999999874
No 349
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.07 E-value=0.0001 Score=60.10 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=26.0
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
++.+.++ +++|+|++|||||||.++|.--++
T Consensus 55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456777 999999999999999999976554
No 350
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.07 E-value=0.00049 Score=51.84 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++.+++++|++|+||||++-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999888777665
No 351
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.00041 Score=52.08 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=25.3
Q ss_pred hhhhcC--CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 12 ADATVT--VKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 12 ~~~~~~--~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.|..+. ++++.++.|+|+||+|||++|..++.
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 344443 57889999999999999999877653
No 352
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.06 E-value=0.00035 Score=50.98 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=21.8
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...+...|+|+|.+|+|||||++.|..
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHh
Confidence 3345567899999999999999999885
No 353
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.05 E-value=0.00041 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+++++++|+||||||++|..+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999877543
No 354
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.05 E-value=0.00032 Score=56.35 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++++.++.|.|+||||||||+..++...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998887543
No 355
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.05 E-value=0.00032 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+.-++|+|++|+|||++++.+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35688999999999999999998764
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.04 E-value=0.00045 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.+++++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998766
No 357
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.02 E-value=0.00056 Score=52.87 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg~ 47 (182)
..-++|.||||+|||+++++|+..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 456999999999999999999987654
No 358
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.02 E-value=0.00021 Score=63.43 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg~~~ 49 (182)
.++..++|.|||||||||+++.++..++..+
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4667799999999999999999999887443
No 359
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.02 E-value=0.00058 Score=50.66 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.+...|+|+|.+|||||||+..|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998764
No 360
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.01 E-value=0.00053 Score=55.23 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++++.++.|.|+||+||||+|..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999998888653
No 361
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.00 E-value=0.00039 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=20.9
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.......|+|+|.+|||||||++.|.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34555789999999999999999886
No 362
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.00 E-value=0.00053 Score=57.10 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...-++|+||||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999986
No 363
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.98 E-value=0.00052 Score=54.90 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=25.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
-++++.++.|.|+|||||||+|..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999999998875
No 364
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.98 E-value=0.00051 Score=49.87 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=20.5
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
...+...|+|+|.+|+|||||.+.+.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHH
Confidence 34566789999999999999999887
No 365
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.98 E-value=0.0006 Score=53.87 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=28.7
Q ss_pred chhhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 8 PVKEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 8 ~~~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+....+... -++++.+++|+|+||+||||++..++...
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 333334433 36889999999999999999999888653
No 366
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00059 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++|+||+|+||||+++.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 367
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.98 E-value=0.00054 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+|+|++|+|||||.+.+..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998874
No 368
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.97 E-value=0.00038 Score=57.50 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999765
No 369
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.95 E-value=0.00022 Score=61.41 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCcEe-cHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYTHL-SAGDL 55 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~~~-~~~di 55 (182)
.++|+|++|||||||++.|+ |+... +.|.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~---Gl~~P~~sG~v 77 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS---GVALPRGSGIV 77 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH---SCC-------C
T ss_pred eEEEECCCCChHHHHHHHHh---CCCCCCCCCeE
Confidence 39999999999999999999 76544 45544
No 370
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.95 E-value=0.00045 Score=61.22 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.++.+++|+||+||||||+.+.++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 5678999999999999999999983
No 371
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.95 E-value=0.00077 Score=51.17 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...+..+++++|.+|+||||++..|+..+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34667899999999999999999998665
No 372
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.94 E-value=1.5e-05 Score=60.43 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL 56 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg~~~~~~~di~ 56 (182)
.+++|+||+||||||++++|+..+ ..+.+++.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~---~~~~G~i~ 59 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL---IPDLTLLH 59 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH---SCCTTTC-
T ss_pred cEEEEECCCCCCHHHHHHHHhccc---ccCCCeEE
Confidence 567899999999999999999544 34444443
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.94 E-value=0.00059 Score=47.38 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~ 44 (182)
..|+++|.+|||||||++.|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 374
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.94 E-value=0.00062 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+.|+++|++|+|||||++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999843
No 375
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00068 Score=48.81 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
.+...|+|+|++|||||||++.|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999998843
No 376
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.94 E-value=0.00067 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|++|||||||.+.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999873
No 377
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.92 E-value=0.00043 Score=59.45 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..+..++|+|||||||||+++.|+..++
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4556899999999999999999998764
No 378
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.92 E-value=0.00045 Score=54.40 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=22.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
++.++++-.++|+|.||+|||||.+.|.
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHh
Confidence 3345666799999999999999999987
No 379
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.92 E-value=0.00083 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
.....|+|+|++|+|||||.+.|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999854
No 380
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.92 E-value=0.00044 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~ 43 (182)
..|+|+|++|||||||++.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999873
No 381
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.92 E-value=0.00081 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+++|.+|+|||||.+.|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999864
No 382
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.92 E-value=0.00065 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+++|.+|||||||++.|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999999874
No 383
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.92 E-value=0.00044 Score=54.70 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
.+++.++ +.+|+|++|||||||.++|.-.
T Consensus 19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred EEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 3455555 9999999999999999999843
No 384
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.92 E-value=0.00064 Score=55.45 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...++..++|.|+||+|||||.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 456778999999999999999999986
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.91 E-value=0.00051 Score=49.36 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
.+...|+++|.+|||||||++.|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34468999999999999999999853
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.91 E-value=0.00047 Score=58.19 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.7
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.+.++.+++|.|+||||||||++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56888999999999999999999998654
No 387
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.90 E-value=0.00057 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++|+||+|+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 388
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.90 E-value=0.00066 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+|+|++|||||||.+.|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999983
No 389
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.90 E-value=0.00055 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.+...|+|+|.+|+|||||.+.|.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHh
Confidence 456789999999999999999987
No 390
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.90 E-value=0.00049 Score=53.99 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.+...++|+|+||+|||||.+.|.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
No 391
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.90 E-value=0.00035 Score=62.73 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=24.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
++...++.+++|+||+||||||+.+.++
T Consensus 667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 667 DLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 4456778999999999999999999886
No 392
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.90 E-value=0.00075 Score=48.64 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
..+...|+|+|.+|||||||++.+..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 34556899999999999999987764
No 393
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.90 E-value=0.00067 Score=55.32 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=30.8
Q ss_pred hhhhhhcCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 10 KEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 10 ~~~~~~~~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.++......++..++|.|++|+|||||++.|++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 455777788999999999999999999999888643
No 394
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.88 E-value=0.00076 Score=55.90 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
-++++.+++|.|+||+||||++..++...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999998887643
No 395
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.88 E-value=0.00063 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+++|++|||||||++.|..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45789999999999999999874
No 396
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.87 E-value=0.00075 Score=55.48 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.9
Q ss_pred cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 16 ~~~~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+++..+.+++|+||+||||||+.+++.-.++
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3455678999999999999999999986554
No 397
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.86 E-value=0.00052 Score=55.33 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=23.4
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
++.+.++ +.+|+||+||||||+.+++.-
T Consensus 21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 21 TLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4455555 999999999999999999874
No 398
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.86 E-value=0.00094 Score=48.09 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.....|+|+|++|+|||||.+.|.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 345789999999999999999987
No 399
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.86 E-value=0.00075 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999765
No 400
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.85 E-value=0.00083 Score=48.84 Aligned_cols=27 Identities=15% Similarity=0.291 Sum_probs=21.1
Q ss_pred CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 17 ~~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...+...|+|+|.+|+|||||++.|..
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 345567899999999999999999874
No 401
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.85 E-value=0.00053 Score=61.71 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=23.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
++...++.+++|+||+||||||+.+.++
T Consensus 656 sl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 656 YFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3345677899999999999999999884
No 402
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.85 E-value=0.0008 Score=55.43 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++.+++++|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999776
No 403
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.00057 Score=50.09 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
......|+|+|.+|||||||.+.|..
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhc
Confidence 34456899999999999999999874
No 404
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.85 E-value=0.00075 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+|+|.+|||||||.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 405
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.84 E-value=0.00086 Score=47.43 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
+...|+|+|.+|+|||||.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999998754
No 406
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.84 E-value=0.0007 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.....|+|+|.+|+|||||.+.|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3346899999999999999999875
No 407
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.84 E-value=0.0006 Score=54.01 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++++.++.|.|+|||||||+|..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 5778999999999999999999998753
No 408
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.83 E-value=0.00092 Score=47.94 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.....|+|+|.+|||||||++.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHc
Confidence 3446899999999999999999874
No 409
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.83 E-value=0.00093 Score=49.18 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
.....|+|+|++|+|||||++.|...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999854
No 410
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.83 E-value=0.00077 Score=47.48 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La 42 (182)
...|+|+|++|+|||||.+.|.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCccHHHHHHHHh
Confidence 4579999999999999999887
No 411
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.82 E-value=0.00093 Score=47.42 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|+|||||.+.+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4557899999999999999998874
No 412
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.82 E-value=0.00089 Score=48.01 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.....|+|+|++|+|||||.+.|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998873
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.80 E-value=0.00078 Score=47.92 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|||||||++.|..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Confidence 3456899999999999999999874
No 414
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.79 E-value=0.00089 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
+.+.+|+|++||||||+..+|.-.++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999875553
No 415
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.78 E-value=0.00066 Score=48.33 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.+...|+|+|++|||||||.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999998886
No 416
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.78 E-value=0.0007 Score=59.76 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+.+++|+||+||||||+.+.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 78999999999999999999983
No 417
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.77 E-value=0.0007 Score=53.43 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++++.++.|.|+||+||||+|..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 577899999999999999999988864
No 418
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.76 E-value=0.00087 Score=46.91 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+++|.+|+|||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999999873
No 419
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.76 E-value=0.00093 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|++|||||||++.|..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999998874
No 420
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.75 E-value=0.001 Score=58.51 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
..+.-++|+||||+|||++++.|++.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999987
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.75 E-value=0.00074 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|++|+|||||.+.|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 446899999999999999999874
No 422
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.75 E-value=0.00046 Score=58.05 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.-++|.||||+|||++++.|++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4589999999999999999998774
No 423
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.75 E-value=0.0011 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|++|||||||++.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 446799999999999999999873
No 424
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.74 E-value=0.0011 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
.+...|+|+|.+|+|||||++.|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999998743
No 425
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.73 E-value=0.0012 Score=48.30 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
......|+|+|++|+|||||.+.|..
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999874
No 426
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0013 Score=47.67 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|+|||||.+.|..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4457899999999999999999875
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.72 E-value=0.001 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~ 43 (182)
..|+|+|++|+|||||.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5689999999999999999873
No 428
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.72 E-value=0.00092 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.....|+|+|++|+|||||.+.|.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHc
Confidence 345689999999999999999998
No 429
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.72 E-value=0.0011 Score=46.38 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La 42 (182)
..|+|+|.+|+|||||.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999886
No 430
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.0015 Score=47.15 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.....|+|+|.+|+|||||.+.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3456899999999999999999875
No 431
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.70 E-value=0.00091 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~ 43 (182)
..|+++|++|||||||.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999998874
No 432
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.70 E-value=0.001 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|.+|+|||||++.|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999985
No 433
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.70 E-value=0.0013 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++.+|+++|++|+||||++..|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998888665
No 434
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.70 E-value=0.0011 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La 42 (182)
..|+|+|++|+|||||++.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.69 E-value=0.00096 Score=47.58 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+|+|++|+|||||.+.|..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999974
No 436
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.69 E-value=0.0016 Score=47.74 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.++.+++++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999888887776
No 437
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.69 E-value=0.0011 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|++.|++|+|||||.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999885
No 438
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.68 E-value=0.001 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+++|.+|+|||||.+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 439
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.0011 Score=46.88 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|+|||||.+.|..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3446899999999999999999874
No 440
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.67 E-value=0.0016 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La 42 (182)
..+...|+|+|++|+|||||++.+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHH
Confidence 3566789999999999999999885
No 441
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.67 E-value=0.0013 Score=46.05 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
...|+++|++|+|||||.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998743
No 442
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.67 E-value=0.0012 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+.+.+|+||+||||||+..++.-
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999998753
No 443
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.66 E-value=0.0011 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|++|+|||||.+.|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999874
No 444
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.66 E-value=0.0016 Score=57.15 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCc
Q 030176 23 VVFVLGGPGSGKGTQCANIVEHFGYT 48 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~~lg~~ 48 (182)
-++|+||||+|||++++.+++.++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~ 515 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIE 515 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 68999999999999999999998744
No 445
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.66 E-value=0.0015 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
.+++|+|++|+|||||++.+++..+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998765
No 446
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.66 E-value=0.0013 Score=46.49 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+|+|++|||||||.+.|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 447
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.66 E-value=0.00098 Score=47.12 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La 42 (182)
....|+|+|.+|||||||++.|.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999999999886
No 448
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.66 E-value=0.00084 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|.+|+|||||++.|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999873
No 449
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.65 E-value=0.00081 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La 42 (182)
..|+|+|++|||||||.+.|+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 467999999999999999987
No 450
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.65 E-value=0.0014 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+++|++|+|||||.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4667899999999999999998873
No 451
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.65 E-value=0.0011 Score=48.35 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|.+|+|||||++.+..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 452
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.64 E-value=0.0011 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCeEEEE--EcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFV--LGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I--~G~~GsGKSTla~~La~~l 45 (182)
.+..++| +|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567778 9999999999999998765
No 453
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.64 E-value=0.0015 Score=52.83 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
++++.++.|.|+||+||||+|..++...
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 4678899999999999999998887653
No 454
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.0011 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|.+|+|||||++.|..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999998874
No 455
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.64 E-value=0.0011 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|++.|.+|+|||||.+.+..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 446799999999999999999875
No 456
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.64 E-value=0.0015 Score=53.97 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 18 ~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++++.+++|+|+||+||||++..++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 678899999999999999999888764
No 457
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.62 E-value=0.0012 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.+...|+|+|++|||||||.+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 345678999999999999999886
No 458
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.0016 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.+...|+|+|.+|||||||.+.|.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999999987
No 459
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.61 E-value=0.0017 Score=51.95 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=28.0
Q ss_pred hhhhhhc-CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 10 KEADATV-TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 10 ~~~~~~~-~~~~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...+..+ -+.++.+++|+|+||+||||++..++...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3334433 36888999999999999999998887653
No 460
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.60 E-value=0.0014 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|++|+|||||++.|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999875
No 461
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.60 E-value=0.0015 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+|+|.+|+|||||.+.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999874
No 462
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.60 E-value=0.0014 Score=47.18 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|++|+|||||++.|..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 345799999999999999999875
No 463
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.58 E-value=0.0016 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|.+|||||||.+.|..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999874
No 464
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.58 E-value=0.0016 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|||||||.+.|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 4457899999999999999999973
No 465
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.57 E-value=0.0014 Score=47.04 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...|+|.|.+|+|||||++.|...+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999998887554
No 466
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.56 E-value=0.0018 Score=45.09 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~ 43 (182)
.|++.|.+|+|||||.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999874
No 467
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.56 E-value=0.0014 Score=46.65 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+++|.+|+|||||.+.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999998874
No 468
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.55 E-value=0.0016 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|+|||||++.+..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 3446899999999999999988874
No 469
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.54 E-value=0.0016 Score=51.45 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~lg~~~~~~ 52 (182)
.+.-++|+|++|+||||++..|.++ |...+..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 4678999999999999999999764 6555443
No 470
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.54 E-value=0.0014 Score=46.37 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|++|+|||||.+.|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999998874
No 471
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.54 E-value=0.0016 Score=51.16 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
.+.-++|+|+||+|||++|+.+++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34568899999999999999999854
No 472
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.54 E-value=0.0007 Score=60.28 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQC 38 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla 38 (182)
+.++|++.+++|||.+|||||||+
T Consensus 30 ~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 30 SVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEESSSEEEEESSTTSSHHHHH
T ss_pred eEEecCCCEEEEECCCCCCHHHHH
Confidence 456899999999999999999986
No 473
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=96.53 E-value=0.0064 Score=47.31 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~~lg 46 (182)
..+.+|++.|.-||||.+..+.|.+.++
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ld 100 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMD 100 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcC
Confidence 3578999999999999999999999885
No 474
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.52 E-value=0.0015 Score=46.50 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
....|+|+|++|||||||++.|..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999874
No 475
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.52 E-value=0.0015 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La~ 43 (182)
.|+|+|.+|+|||||.+.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999873
No 476
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.51 E-value=0.0018 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
...+++|+|+||+||||+++.+...+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999998888654
No 477
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.51 E-value=0.00075 Score=60.60 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.9
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQC 38 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla 38 (182)
+.++|+.++++|||++||||||||
T Consensus 18 ~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 18 TVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCEEETTSEEEEEESTTSSSHHHH
T ss_pred eeccCCCcEEEEECCCCCcHHHHH
Confidence 556799999999999999999996
No 478
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.51 E-value=0.0017 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
....|+|+|.+|+|||||.+.|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999998753
No 479
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.00097 Score=48.08 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
....|+|+|.+|+|||||++.|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4468999999999999999998854
No 480
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.50 E-value=0.0015 Score=59.32 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCChHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANI 41 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~L 41 (182)
+.+++|+||+||||||+++.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 689999999999999999987
No 481
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.49 E-value=0.0004 Score=61.80 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.7
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHH-HH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCAN-IV 42 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~-La 42 (182)
+++++.+.+++|+|++|||||||++. |+
T Consensus 517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 517 DVRFPLGVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp EEEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred eEEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence 55678999999999999999999985 54
No 482
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.49 E-value=0.0015 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.....|+|+|.+|+|||||.+.|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 3346899999999999999998873
No 483
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.49 E-value=0.0006 Score=61.47 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=24.2
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANI 41 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~L 41 (182)
+++++.+.+++|+|++|||||||++.+
T Consensus 662 sl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 662 DVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 556789999999999999999999874
No 484
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0015 Score=47.17 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|++|+|||||.+.|..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc
Confidence 3346899999999999999999874
No 485
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.48 E-value=0.0019 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~ 43 (182)
...|+|+|.||||||||.+.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999984
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.46 E-value=0.002 Score=47.24 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|.+|+|||||.+.|..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999999874
No 487
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.46 E-value=0.0012 Score=54.24 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030176 23 VVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 23 ~i~I~G~~GsGKSTla~~La 42 (182)
.|+|+|++|||||||.+.|.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47999999999999999998
No 488
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.45 E-value=0.0021 Score=47.81 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.+...|+|+|.+|+|||||.+.|.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999999887
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.45 E-value=0.0018 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 030176 22 TVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 22 ~~i~I~G~~GsGKSTla~~La~ 43 (182)
+.|+|+|.+|||||||.+.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3689999999999999999984
No 490
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.45 E-value=0.0015 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|.+|||||||.+.|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 346799999999999999999983
No 491
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.44 E-value=0.00084 Score=60.56 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQC 38 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla 38 (182)
+.++|+.++++|||++||||||||
T Consensus 40 ~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 40 DLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EEEEESSSEEEEEESTTSSHHHHH
T ss_pred eeeccCCCEEEEECCCCCcHHHHH
Confidence 456899999999999999999985
No 492
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.44 E-value=0.00086 Score=60.32 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.6
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQC 38 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla 38 (182)
+.++|+.++++|||++||||||||
T Consensus 38 ~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 38 DVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHH
T ss_pred eeeccCCcEEEEECCCCCCHHHHH
Confidence 456799999999999999999985
No 493
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.42 E-value=0.0023 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|.+|||||||.+.|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999984
No 494
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.41 E-value=0.0016 Score=48.05 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHH-HHHHh
Q 030176 19 KKPTVVFVLGGPGSGKGTQCAN-IVEHF 45 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~-La~~l 45 (182)
.....|+|+|.+|||||||++. +...+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4456899999999999999998 54444
No 495
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.41 E-value=0.0022 Score=46.51 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|+|||||.+.+..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4456899999999999999998774
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0015 Score=46.88 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 030176 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 20 ~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
+...|+|+|.+|+|||||.+.|..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999874
No 497
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.39 E-value=0.0018 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La 42 (182)
.....|+|+|.+|||||||.+.|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 445689999999999999999887
No 498
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.39 E-value=0.002 Score=46.48 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 030176 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (182)
Q Consensus 19 ~~~~~i~I~G~~GsGKSTla~~La~ 43 (182)
.+...|+|+|.+|+|||||.+.+..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 4456899999999999999999875
No 499
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.38 E-value=0.002 Score=57.49 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 030176 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (182)
Q Consensus 21 ~~~i~I~G~~GsGKSTla~~La~~l 45 (182)
+.-++|+|+||+||||+++.+++.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999887
No 500
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.38 E-value=0.00097 Score=54.82 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred hcCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 030176 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (182)
Q Consensus 15 ~~~~~~~~~i~I~G~~GsGKSTla~~La~~ 44 (182)
++.......++|+|+||||||||.+.|+..
T Consensus 151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 344566778999999999999999999843
Done!