Query 030178
Match_columns 182
No_of_seqs 107 out of 1185
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.6E-43 3.4E-48 288.1 18.7 174 4-182 1-178 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 3.3E-41 7.2E-46 271.8 17.0 174 3-182 11-188 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 1.3E-40 2.8E-45 274.5 18.6 174 2-182 11-194 (346)
4 COG0656 ARA1 Aldo/keto reducta 100.0 4.3E-41 9.3E-46 266.3 13.1 157 3-182 2-164 (280)
5 TIGR01293 Kv_beta voltage-depe 100.0 1.8E-39 3.9E-44 264.9 17.9 169 6-182 1-177 (317)
6 PLN02587 L-galactose dehydroge 100.0 6.7E-39 1.4E-43 261.2 16.6 159 6-173 1-164 (314)
7 KOG1577 Aldo/keto reductase fa 100.0 2.7E-39 5.9E-44 256.5 13.1 153 6-182 6-182 (300)
8 PRK10376 putative oxidoreducta 100.0 9.3E-38 2E-42 252.0 18.6 170 6-182 9-186 (290)
9 PRK10625 tas putative aldo-ket 100.0 8.1E-38 1.8E-42 257.9 18.7 171 4-182 1-206 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 8.5E-38 1.8E-42 250.9 17.9 167 6-182 1-171 (285)
11 COG4989 Predicted oxidoreducta 100.0 5.4E-37 1.2E-41 235.5 11.2 172 4-182 1-180 (298)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.3E-35 2.8E-40 238.1 13.7 155 18-182 1-160 (283)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.2E-35 6.9E-40 235.6 15.0 148 1-174 1-151 (275)
14 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.3E-35 9.4E-40 233.9 14.9 136 15-173 2-141 (267)
15 PRK14863 bifunctional regulato 100.0 9.7E-35 2.1E-39 234.5 14.1 153 13-182 2-163 (292)
16 KOG1576 Predicted oxidoreducta 100.0 7.1E-35 1.5E-39 225.6 12.6 167 2-173 20-190 (342)
17 COG1453 Predicted oxidoreducta 100.0 8.4E-33 1.8E-37 222.5 13.7 167 4-182 1-175 (391)
18 KOG3023 Glutamate-cysteine lig 96.5 0.0028 6E-08 49.5 3.4 39 136-178 156-194 (285)
19 PRK00208 thiG thiazole synthas 92.1 5.1 0.00011 31.8 11.6 74 99-177 72-147 (250)
20 cd04728 ThiG Thiazole synthase 91.6 5.8 0.00013 31.4 12.2 70 99-173 72-142 (248)
21 PRK07379 coproporphyrinogen II 89.1 2.9 6.2E-05 35.5 8.4 59 100-165 179-255 (400)
22 PRK09058 coproporphyrinogen II 89.1 2.9 6.2E-05 36.1 8.5 60 100-165 227-304 (449)
23 PRK06294 coproporphyrinogen II 88.6 3.7 8E-05 34.4 8.7 61 100-166 167-244 (370)
24 PRK05660 HemN family oxidoredu 86.6 5.2 0.00011 33.6 8.5 25 101-126 172-196 (378)
25 COG0635 HemN Coproporphyrinoge 86.5 5.5 0.00012 34.1 8.6 107 18-165 150-276 (416)
26 PRK08446 coproporphyrinogen II 86.1 11 0.00024 31.3 10.0 60 100-165 162-231 (350)
27 TIGR00126 deoC deoxyribose-pho 85.1 6.7 0.00015 30.3 7.7 70 35-120 130-205 (211)
28 COG1832 Predicted CoA-binding 84.4 6.3 0.00014 28.4 6.7 92 35-172 28-119 (140)
29 COG1801 Uncharacterized conser 83.8 21 0.00045 28.6 10.9 109 18-132 4-115 (263)
30 PRK13347 coproporphyrinogen II 83.5 6.2 0.00013 34.0 7.6 60 100-165 216-291 (453)
31 PF05049 IIGP: Interferon-indu 82.6 1.6 3.5E-05 36.8 3.5 114 48-169 109-238 (376)
32 COG1748 LYS9 Saccharopine dehy 81.0 10 0.00022 32.2 7.8 82 36-132 78-159 (389)
33 PRK05628 coproporphyrinogen II 80.3 15 0.00033 30.7 8.7 59 100-165 172-248 (375)
34 PRK05283 deoxyribose-phosphate 79.7 12 0.00027 29.8 7.5 87 16-122 133-227 (257)
35 PRK06582 coproporphyrinogen II 78.6 17 0.00036 30.8 8.4 60 100-165 174-250 (390)
36 PRK08599 coproporphyrinogen II 78.1 16 0.00036 30.5 8.3 60 100-165 164-240 (377)
37 TIGR00221 nagA N-acetylglucosa 78.0 35 0.00075 28.8 10.1 125 35-173 75-210 (380)
38 PRK00730 rnpA ribonuclease P; 77.9 11 0.00024 27.1 6.2 67 77-152 46-114 (138)
39 TIGR00538 hemN oxygen-independ 76.9 13 0.00028 32.1 7.4 60 100-165 215-290 (455)
40 PRK08208 coproporphyrinogen II 76.8 17 0.00036 31.2 8.0 59 100-165 205-275 (430)
41 PRK05799 coproporphyrinogen II 76.5 24 0.00052 29.5 8.8 59 100-165 163-239 (374)
42 PRK07094 biotin synthase; Prov 76.2 22 0.00047 29.0 8.3 123 35-173 71-202 (323)
43 TIGR03822 AblA_like_2 lysine-2 76.0 43 0.00092 27.5 11.7 124 35-173 120-252 (321)
44 PF03102 NeuB: NeuB family; I 75.6 22 0.00047 28.1 7.8 110 33-166 52-183 (241)
45 COG3623 SgaU Putative L-xylulo 74.3 6.4 0.00014 31.1 4.4 77 11-88 65-156 (287)
46 COG0274 DeoC Deoxyribose-phosp 73.9 30 0.00066 27.1 8.0 86 16-119 127-212 (228)
47 TIGR03699 mena_SCO4550 menaqui 73.8 49 0.0011 27.2 10.4 125 34-171 72-215 (340)
48 PRK09061 D-glutamate deacylase 73.7 42 0.00091 29.5 9.9 106 39-151 171-277 (509)
49 PRK00507 deoxyribose-phosphate 73.5 15 0.00032 28.6 6.3 74 35-119 134-208 (221)
50 cd07948 DRE_TIM_HCS Saccharomy 72.6 47 0.001 26.5 9.5 26 33-58 18-43 (262)
51 PF05690 ThiG: Thiazole biosyn 71.7 48 0.001 26.2 10.8 131 17-173 9-142 (247)
52 PRK09249 coproporphyrinogen II 71.0 26 0.00057 30.2 7.9 60 100-165 215-290 (453)
53 PF00682 HMGL-like: HMGL-like 70.4 29 0.00063 26.8 7.5 121 33-172 10-143 (237)
54 PRK00164 moaA molybdenum cofac 69.9 59 0.0013 26.5 10.4 120 33-172 48-180 (331)
55 COG3172 NadR Predicted ATPase/ 69.6 24 0.00052 26.5 6.2 98 48-149 78-185 (187)
56 PTZ00413 lipoate synthase; Pro 69.5 71 0.0015 27.2 10.8 131 32-180 175-329 (398)
57 TIGR00539 hemN_rel putative ox 69.0 45 0.00097 27.7 8.7 26 100-126 164-189 (360)
58 cd00959 DeoC 2-deoxyribose-5-p 69.0 30 0.00065 26.3 7.1 70 35-118 129-202 (203)
59 PLN02363 phosphoribosylanthran 68.5 12 0.00026 29.8 4.9 72 101-182 56-128 (256)
60 PRK13958 N-(5'-phosphoribosyl) 68.4 13 0.00028 28.5 5.0 64 113-182 17-81 (207)
61 TIGR02631 xylA_Arthro xylose i 68.2 67 0.0015 27.2 9.6 41 17-57 7-52 (382)
62 cd00405 PRAI Phosphoribosylant 68.1 50 0.0011 24.9 8.7 42 120-169 73-114 (203)
63 cd07945 DRE_TIM_CMS Leptospira 66.6 67 0.0015 25.9 9.1 21 34-54 144-164 (280)
64 TIGR00676 fadh2 5,10-methylene 65.9 67 0.0015 25.6 9.9 128 37-182 15-165 (272)
65 PRK15108 biotin synthase; Prov 63.9 85 0.0018 26.1 11.0 124 34-172 76-207 (345)
66 TIGR00126 deoC deoxyribose-pho 63.7 67 0.0014 24.8 9.7 103 31-148 12-114 (211)
67 PRK12581 oxaloacetate decarbox 63.0 1.1E+02 0.0023 26.9 12.1 112 35-164 103-215 (468)
68 PRK13796 GTPase YqeH; Provisio 62.2 93 0.002 26.0 12.5 139 18-172 35-180 (365)
69 TIGR02351 thiH thiazole biosyn 62.1 94 0.002 26.0 10.3 122 34-170 103-236 (366)
70 cd07943 DRE_TIM_HOA 4-hydroxy- 61.8 78 0.0017 25.0 11.3 27 31-57 16-42 (263)
71 COG0135 TrpF Phosphoribosylant 61.7 21 0.00046 27.6 5.0 62 114-182 19-81 (208)
72 COG0279 GmhA Phosphoheptose is 61.7 66 0.0014 24.1 8.2 122 37-172 28-154 (176)
73 PRK05904 coproporphyrinogen II 61.5 78 0.0017 26.4 8.7 27 100-127 167-193 (353)
74 COG2089 SpsE Sialic acid synth 61.4 96 0.0021 25.9 10.5 113 33-169 86-220 (347)
75 COG0276 HemH Protoheme ferro-l 60.9 80 0.0017 26.2 8.4 72 100-171 204-278 (320)
76 TIGR02026 BchE magnesium-proto 60.1 81 0.0018 27.6 8.9 44 130-173 317-360 (497)
77 cd01297 D-aminoacylase D-amino 60.0 65 0.0014 27.3 8.2 123 37-174 167-298 (415)
78 PRK10550 tRNA-dihydrouridine s 60.0 96 0.0021 25.4 10.8 129 35-179 73-222 (312)
79 PRK08898 coproporphyrinogen II 59.7 65 0.0014 27.2 8.1 60 100-165 185-257 (394)
80 PLN02389 biotin synthase 59.3 1.1E+02 0.0024 25.9 10.6 117 34-167 116-243 (379)
81 PRK11840 bifunctional sulfur c 58.8 1.1E+02 0.0023 25.5 10.9 70 99-173 146-216 (326)
82 cd08620 PI-PLCXDc_like_1 Catal 58.6 45 0.00098 27.0 6.6 44 44-87 37-104 (281)
83 KOG4175 Tryptophan synthase al 58.4 86 0.0019 24.4 7.9 93 11-117 91-202 (268)
84 PRK06256 biotin synthase; Vali 58.3 1E+02 0.0022 25.2 9.0 123 34-172 91-222 (336)
85 KOG2264 Exostosin EXT1L [Signa 57.7 41 0.00089 30.2 6.4 58 62-134 631-690 (907)
86 PRK01222 N-(5'-phosphoribosyl) 57.3 25 0.00054 27.1 4.7 63 114-182 20-83 (210)
87 TIGR02090 LEU1_arch isopropylm 57.1 1.1E+02 0.0024 25.6 8.9 27 32-58 17-43 (363)
88 PRK05588 histidinol-phosphatas 56.2 68 0.0015 25.2 7.2 101 37-152 16-140 (255)
89 cd07937 DRE_TIM_PC_TC_5S Pyruv 54.5 1.1E+02 0.0024 24.4 11.8 28 31-58 15-42 (275)
90 PRK05692 hydroxymethylglutaryl 54.5 1.1E+02 0.0025 24.6 10.0 21 34-54 152-172 (287)
91 COG0502 BioB Biotin synthase a 53.0 1.2E+02 0.0026 25.3 8.2 120 34-172 84-215 (335)
92 cd03174 DRE_TIM_metallolyase D 52.3 1.1E+02 0.0024 23.8 10.8 28 33-60 15-42 (265)
93 PF14606 Lipase_GDSL_3: GDSL-l 51.6 1E+02 0.0022 23.2 7.7 93 37-130 49-146 (178)
94 PF08671 SinI: Anti-repressor 51.6 19 0.00041 18.8 2.2 16 37-52 3-18 (30)
95 COG4464 CapC Capsular polysacc 51.4 1.2E+02 0.0026 23.9 9.3 112 33-152 16-132 (254)
96 PRK11267 biopolymer transport 51.3 53 0.0012 23.4 5.4 54 100-162 81-134 (141)
97 TIGR00433 bioB biotin syntheta 51.2 1.1E+02 0.0024 24.3 7.9 123 35-173 63-194 (296)
98 PRK11024 colicin uptake protei 51.1 49 0.0011 23.6 5.2 53 100-161 85-137 (141)
99 COG0145 HyuA N-methylhydantoin 51.1 1.7E+02 0.0037 26.9 9.6 101 32-134 134-246 (674)
100 COG0646 MetH Methionine syntha 50.9 1.4E+02 0.003 24.6 11.4 95 35-129 51-165 (311)
101 PRK05414 urocanate hydratase; 50.2 46 0.00099 29.4 5.5 123 41-181 116-264 (556)
102 TIGR01228 hutU urocanate hydra 49.1 47 0.001 29.2 5.4 123 41-181 107-255 (545)
103 PRK11170 nagA N-acetylglucosam 49.0 1.6E+02 0.0035 24.8 10.3 30 140-173 179-208 (382)
104 PRK12677 xylose isomerase; Pro 48.8 1.2E+02 0.0027 25.6 8.0 40 18-57 7-51 (384)
105 PRK07535 methyltetrahydrofolat 48.7 1.4E+02 0.003 23.8 9.0 26 135-164 173-200 (261)
106 PRK06806 fructose-bisphosphate 48.1 1.5E+02 0.0032 24.0 8.9 122 39-173 86-221 (281)
107 PRK09240 thiH thiamine biosynt 47.9 95 0.0021 26.1 7.1 123 34-171 104-238 (371)
108 PRK08609 hypothetical protein; 47.3 1.7E+02 0.0038 26.2 9.0 23 38-60 350-372 (570)
109 PRK08195 4-hyroxy-2-oxovalerat 47.1 1.7E+02 0.0036 24.3 12.0 27 31-57 19-45 (337)
110 cd00419 Ferrochelatase_C Ferro 47.1 1E+02 0.0022 21.9 7.8 100 69-170 7-111 (135)
111 PRK05692 hydroxymethylglutaryl 46.4 59 0.0013 26.3 5.5 68 100-173 23-90 (287)
112 smart00148 PLCXc Phospholipase 46.1 1E+02 0.0022 21.8 6.2 66 40-113 31-114 (135)
113 cd00739 DHPS DHPS subgroup of 45.8 1.5E+02 0.0033 23.5 8.7 116 41-165 87-210 (257)
114 COG1121 ZnuC ABC-type Mn/Zn tr 45.5 1.2E+02 0.0026 24.2 7.0 47 120-172 157-206 (254)
115 TIGR02803 ExbD_1 TonB system t 45.5 83 0.0018 21.7 5.5 53 100-161 67-119 (122)
116 TIGR03217 4OH_2_O_val_ald 4-hy 44.9 1.8E+02 0.0039 24.1 11.8 26 32-57 19-44 (333)
117 TIGR00973 leuA_bact 2-isopropy 44.7 2.1E+02 0.0046 25.1 9.0 26 33-58 19-44 (494)
118 PLN02428 lipoic acid synthase 44.3 1.9E+02 0.0041 24.2 9.1 127 35-180 131-281 (349)
119 cd07942 DRE_TIM_LeuA Mycobacte 44.1 1.7E+02 0.0037 23.6 8.8 39 33-72 19-58 (284)
120 PRK05301 pyrroloquinoline quin 43.2 1.7E+02 0.0036 24.4 7.9 25 33-57 45-69 (378)
121 COG1751 Uncharacterized conser 43.2 1.2E+02 0.0027 22.4 6.1 71 35-118 12-84 (186)
122 KOG2281 Dipeptidyl aminopeptid 43.1 22 0.00048 32.4 2.7 40 112-151 794-834 (867)
123 PF04055 Radical_SAM: Radical 42.8 1.1E+02 0.0024 21.1 9.6 126 33-173 27-164 (166)
124 TIGR03820 lys_2_3_AblA lysine- 42.7 2.2E+02 0.0048 24.5 11.5 125 35-173 139-270 (417)
125 PF01118 Semialdhyde_dh: Semia 42.4 37 0.0008 23.3 3.3 27 35-61 75-101 (121)
126 COG3215 PilZ Tfp pilus assembl 41.6 1.1E+02 0.0025 20.9 5.9 83 35-119 18-111 (117)
127 cd03770 SR_TndX_transposase Se 41.5 60 0.0013 23.0 4.4 46 106-151 54-101 (140)
128 PF01175 Urocanase: Urocanase; 41.4 71 0.0015 28.2 5.4 122 41-181 106-254 (546)
129 cd05007 SIS_Etherase N-acetylm 41.1 1.8E+02 0.0039 23.0 9.4 56 110-172 108-163 (257)
130 PRK13361 molybdenum cofactor b 40.9 2E+02 0.0043 23.5 12.4 121 33-173 44-177 (329)
131 cd03174 DRE_TIM_metallolyase D 40.6 1.4E+02 0.0029 23.2 6.7 69 100-173 16-85 (265)
132 PLN02321 2-isopropylmalate syn 39.5 1.3E+02 0.0029 27.4 7.0 101 31-145 234-342 (632)
133 PRK05441 murQ N-acetylmuramic 39.0 2.1E+02 0.0046 23.2 8.8 60 106-172 117-176 (299)
134 PLN02746 hydroxymethylglutaryl 39.0 99 0.0021 25.9 5.8 101 29-145 189-302 (347)
135 cd07945 DRE_TIM_CMS Leptospira 38.8 2.1E+02 0.0045 23.1 9.3 29 33-61 15-45 (280)
136 cd04740 DHOD_1B_like Dihydroor 38.8 2E+02 0.0044 23.0 10.9 127 35-179 100-258 (296)
137 PF05378 Hydant_A_N: Hydantoin 38.4 79 0.0017 23.5 4.8 43 33-75 130-174 (176)
138 PRK03031 rnpA ribonuclease P; 37.9 1.4E+02 0.003 20.8 6.6 64 77-148 47-114 (122)
139 TIGR02801 tolR TolR protein. T 37.7 1.1E+02 0.0023 21.3 5.1 32 125-161 96-127 (129)
140 PRK11865 pyruvate ferredoxin o 37.6 2E+02 0.0042 23.6 7.2 116 39-173 164-286 (299)
141 PRK00499 rnpA ribonuclease P; 37.2 1.4E+02 0.0029 20.5 6.4 63 77-148 38-104 (114)
142 PF09391 DUF2000: Protein of u 37.1 91 0.002 22.2 4.7 46 35-80 62-107 (133)
143 PRK04390 rnpA ribonuclease P; 37.1 1.4E+02 0.0031 20.7 6.8 64 77-148 44-110 (120)
144 COG2987 HutU Urocanate hydrata 37.0 88 0.0019 27.3 5.2 57 114-181 205-264 (561)
145 PRK14042 pyruvate carboxylase 37.0 3.2E+02 0.007 24.8 11.7 102 35-148 94-195 (596)
146 PRK13843 conjugal transfer pro 36.9 44 0.00096 25.7 3.1 26 134-164 51-76 (207)
147 KOG0173 20S proteasome, regula 36.4 32 0.0007 27.3 2.4 23 29-51 178-200 (271)
148 PF10007 DUF2250: Uncharacteri 36.2 37 0.00079 22.7 2.3 46 105-153 8-53 (92)
149 TIGR02109 PQQ_syn_pqqE coenzym 36.2 2.1E+02 0.0047 23.5 7.5 21 35-55 38-58 (358)
150 PF00388 PI-PLC-X: Phosphatidy 36.0 88 0.0019 22.2 4.6 68 41-116 30-115 (146)
151 COG1809 (2R)-phospho-3-sulfola 35.8 1.8E+02 0.0039 23.0 6.3 104 34-150 57-167 (258)
152 PRK13803 bifunctional phosphor 35.7 78 0.0017 28.6 5.1 72 102-182 13-85 (610)
153 TIGR02666 moaA molybdenum cofa 35.3 2.5E+02 0.0053 22.9 13.5 121 33-173 42-176 (334)
154 PRK07360 FO synthase subunit 2 34.6 2.7E+02 0.0058 23.3 7.9 118 34-162 91-227 (371)
155 PF07555 NAGidase: beta-N-acet 34.6 85 0.0018 25.8 4.7 93 30-151 8-106 (306)
156 TIGR00973 leuA_bact 2-isopropy 34.5 3.2E+02 0.007 24.0 10.7 21 34-54 143-163 (494)
157 COG1908 FrhD Coenzyme F420-red 34.4 1.7E+02 0.0036 20.7 6.2 62 65-129 42-105 (132)
158 cd00959 DeoC 2-deoxyribose-5-p 34.4 2E+02 0.0044 21.7 9.4 101 33-148 13-113 (203)
159 COG1448 TyrB Aspartate/tyrosin 34.3 3E+02 0.0064 23.5 7.9 117 52-173 96-233 (396)
160 cd04734 OYE_like_3_FMN Old yel 34.2 2.7E+02 0.0059 23.0 10.2 103 33-152 130-244 (343)
161 PRK10508 hypothetical protein; 34.0 1.3E+02 0.0029 24.8 5.8 43 100-147 286-328 (333)
162 COG0825 AccA Acetyl-CoA carbox 34.0 48 0.001 27.1 3.1 39 37-75 137-179 (317)
163 PF01904 DUF72: Protein of unk 33.9 2.2E+02 0.0048 22.0 7.4 94 51-148 19-113 (230)
164 PF02574 S-methyl_trans: Homoc 33.8 2.5E+02 0.0055 22.6 10.9 109 35-144 39-172 (305)
165 TIGR02804 ExbD_2 TonB system t 33.8 1.6E+02 0.0034 20.3 5.5 32 125-161 87-118 (121)
166 PF13580 SIS_2: SIS domain; PD 33.8 66 0.0014 22.7 3.6 107 37-161 22-137 (138)
167 COG1902 NemA NADH:flavin oxido 33.5 2.9E+02 0.0063 23.2 10.4 96 78-180 214-317 (363)
168 PLN02540 methylenetetrahydrofo 33.5 3.6E+02 0.0078 24.3 10.6 75 37-120 15-89 (565)
169 KOG1579 Homocysteine S-methylt 33.5 1.7E+02 0.0038 24.2 6.2 95 35-129 51-170 (317)
170 TIGR01428 HAD_type_II 2-haloal 33.4 47 0.001 24.6 2.9 64 105-174 61-128 (198)
171 PRK06740 histidinol-phosphatas 33.4 2.8E+02 0.006 22.9 10.2 25 35-59 59-83 (331)
172 PRK11864 2-ketoisovalerate fer 33.3 2.3E+02 0.005 23.2 7.0 116 39-173 160-283 (300)
173 cd08590 PI-PLCc_Rv2075c_like C 32.9 1.5E+02 0.0033 23.7 5.9 16 137-152 150-165 (267)
174 PRK09427 bifunctional indole-3 32.9 1E+02 0.0022 26.9 5.1 61 114-182 274-335 (454)
175 COG2103 Predicted sugar phosph 32.7 2.7E+02 0.0059 22.6 9.4 121 37-172 47-174 (298)
176 TIGR01108 oadA oxaloacetate de 32.7 3.7E+02 0.0081 24.2 12.3 111 32-152 16-134 (582)
177 PRK09389 (R)-citramalate synth 32.7 3.4E+02 0.0074 23.8 9.0 28 31-58 18-45 (488)
178 PF02472 ExbD: Biopolymer tran 32.4 1.3E+02 0.0028 20.5 4.9 49 109-162 78-127 (130)
179 CHL00162 thiG thiamin biosynth 32.3 2.7E+02 0.0058 22.4 11.2 69 100-173 81-156 (267)
180 PF04481 DUF561: Protein of un 32.3 2.5E+02 0.0055 22.1 6.9 115 18-150 16-146 (242)
181 PRK12570 N-acetylmuramic acid- 32.2 2.8E+02 0.006 22.6 9.4 57 109-172 116-172 (296)
182 COG2256 MGS1 ATPase related to 32.1 3.3E+02 0.0071 23.6 7.8 103 41-165 37-143 (436)
183 cd00338 Ser_Recombinase Serine 31.9 1.1E+02 0.0024 20.9 4.5 45 106-150 51-96 (137)
184 PRK08508 biotin synthase; Prov 31.7 2.7E+02 0.0058 22.2 9.6 125 34-171 40-171 (279)
185 PRK04820 rnpA ribonuclease P; 31.5 2E+02 0.0044 20.8 5.8 31 80-118 87-117 (145)
186 cd07938 DRE_TIM_HMGL 3-hydroxy 31.4 1.6E+02 0.0035 23.5 5.8 99 30-144 142-253 (274)
187 COG3877 Uncharacterized protei 31.3 1.8E+02 0.0039 20.1 5.1 43 100-151 69-111 (122)
188 TIGR03858 LLM_2I7G probable ox 31.2 1.7E+02 0.0036 24.1 6.0 45 99-146 285-329 (337)
189 PRK04820 rnpA ribonuclease P; 31.0 2.1E+02 0.0045 20.7 6.7 64 77-148 48-114 (145)
190 PRK09057 coproporphyrinogen II 31.0 2E+02 0.0043 24.2 6.5 27 100-127 167-193 (380)
191 PRK08392 hypothetical protein; 30.8 2.4E+02 0.0052 21.4 9.9 101 37-152 14-119 (215)
192 cd08557 PI-PLCc_bacteria_like 30.8 1.5E+02 0.0032 23.1 5.5 48 42-89 42-108 (271)
193 PRK00915 2-isopropylmalate syn 30.8 3.8E+02 0.0082 23.7 9.5 26 33-58 22-47 (513)
194 TIGR02660 nifV_homocitr homoci 30.7 3.2E+02 0.0069 22.8 8.3 25 33-57 19-43 (365)
195 cd02930 DCR_FMN 2,4-dienoyl-Co 30.6 3.1E+02 0.0068 22.7 9.4 94 78-179 202-304 (353)
196 PRK12277 50S ribosomal protein 30.6 44 0.00096 21.8 1.9 31 142-172 36-72 (83)
197 PRK12435 ferrochelatase; Provi 30.5 1.7E+02 0.0037 24.0 5.9 71 100-170 194-267 (311)
198 PRK10605 N-ethylmaleimide redu 30.4 3.3E+02 0.0071 22.8 14.1 92 82-180 227-320 (362)
199 PRK00915 2-isopropylmalate syn 30.3 3.8E+02 0.0083 23.6 9.9 14 133-146 239-252 (513)
200 PRK12737 gatY tagatose-bisphos 30.3 3E+02 0.0065 22.3 8.0 125 39-173 86-223 (284)
201 cd00598 GH18_chitinase-like Th 30.1 2.1E+02 0.0046 21.1 6.1 75 102-181 89-174 (210)
202 PF13407 Peripla_BP_4: Peripla 30.1 2.4E+02 0.0053 21.3 7.3 73 102-180 13-86 (257)
203 TIGR00035 asp_race aspartate r 30.1 2E+02 0.0043 22.2 6.0 74 100-178 14-102 (229)
204 PRK07259 dihydroorotate dehydr 29.9 2.9E+02 0.0064 22.1 9.5 129 35-179 102-261 (301)
205 PRK08898 coproporphyrinogen II 29.8 3.4E+02 0.0074 22.9 7.9 66 100-173 87-153 (394)
206 PLN03233 putative glutamate-tR 29.7 2.3E+02 0.005 25.2 6.8 59 101-171 58-116 (523)
207 PRK06233 hypothetical protein; 29.6 3.4E+02 0.0074 22.8 9.3 55 68-130 225-279 (372)
208 PLN02775 Probable dihydrodipic 29.5 2.4E+02 0.0052 23.0 6.4 57 109-173 68-124 (286)
209 COG0218 Predicted GTPase [Gene 29.4 2.7E+02 0.0058 21.5 8.7 101 36-148 90-198 (200)
210 TIGR03278 methan_mark_10 putat 29.4 3.6E+02 0.0079 23.1 8.2 120 32-164 84-206 (404)
211 PF06819 Arc_PepC: Archaeal Pe 29.3 1.5E+02 0.0033 20.5 4.5 54 100-153 53-106 (110)
212 COG0796 MurI Glutamate racemas 29.3 3.1E+02 0.0067 22.2 9.2 68 51-129 8-76 (269)
213 PRK03459 rnpA ribonuclease P; 29.1 2E+02 0.0044 20.0 6.4 63 77-148 48-114 (122)
214 PLN02321 2-isopropylmalate syn 29.1 4.5E+02 0.0098 24.0 9.9 37 31-67 102-139 (632)
215 PF00825 Ribonuclease_P: Ribon 28.8 1.7E+02 0.0036 19.8 4.8 60 80-147 45-108 (111)
216 PRK07534 methionine synthase I 28.8 3.4E+02 0.0074 22.5 12.8 94 35-129 43-153 (336)
217 PF15221 LEP503: Lens epitheli 28.7 38 0.00082 20.3 1.3 21 5-25 16-36 (61)
218 PF00697 PRAI: N-(5'phosphorib 28.7 45 0.00097 25.2 2.1 62 113-182 15-77 (197)
219 PRK14340 (dimethylallyl)adenos 28.6 3.8E+02 0.0083 23.1 8.6 125 34-173 178-322 (445)
220 TIGR01858 tag_bisphos_ald clas 28.5 3.2E+02 0.0069 22.1 8.2 125 39-173 84-221 (282)
221 PRK01222 N-(5'-phosphoribosyl) 28.4 2.7E+02 0.0059 21.3 8.9 49 100-163 64-112 (210)
222 cd00668 Ile_Leu_Val_MetRS_core 28.3 1E+02 0.0022 25.0 4.2 47 102-152 81-130 (312)
223 PRK10200 putative racemase; Pr 28.1 2.9E+02 0.0062 21.4 7.0 58 100-162 14-83 (230)
224 PF13653 GDPD_2: Glycerophosph 28.0 72 0.0016 16.5 2.1 18 40-57 10-27 (30)
225 TIGR03821 AblA_like_1 lysine-2 27.8 3.4E+02 0.0074 22.3 11.7 124 35-173 126-258 (321)
226 COG1509 KamA Lysine 2,3-aminom 27.8 1.6E+02 0.0034 25.0 5.1 125 34-174 141-275 (369)
227 PF00762 Ferrochelatase: Ferro 27.8 86 0.0019 25.8 3.7 68 101-168 205-273 (316)
228 cd07939 DRE_TIM_NifV Streptomy 27.7 3E+02 0.0065 21.6 8.8 25 33-57 16-40 (259)
229 TIGR00238 KamA family protein. 27.3 3.5E+02 0.0077 22.3 8.9 102 36-151 144-252 (331)
230 COG0646 MetH Methionine syntha 27.3 2.3E+02 0.005 23.3 5.9 36 135-174 272-308 (311)
231 PLN02666 5-oxoprolinase 27.3 6.5E+02 0.014 25.3 10.8 103 33-136 172-284 (1275)
232 PF03721 UDPG_MGDP_dh_N: UDP-g 27.3 2.7E+02 0.0058 20.8 6.6 54 104-166 126-179 (185)
233 PF02426 MIase: Muconolactone 27.2 87 0.0019 20.8 3.0 39 139-177 28-73 (91)
234 PRK08185 hypothetical protein; 27.0 2.8E+02 0.0061 22.5 6.5 119 39-173 80-219 (283)
235 COG2179 Predicted hydrolase of 26.8 1.4E+02 0.003 22.5 4.2 60 112-177 22-85 (175)
236 TIGR03128 RuMP_HxlA 3-hexulose 26.6 2.7E+02 0.0059 20.7 10.3 119 35-179 10-131 (206)
237 PRK00228 hypothetical protein; 26.5 64 0.0014 24.4 2.6 35 139-173 113-147 (191)
238 cd00814 MetRS_core catalytic c 26.5 1.1E+02 0.0024 25.0 4.1 47 102-151 68-114 (319)
239 PRK05424 rplA 50S ribosomal pr 26.4 3.2E+02 0.0069 21.4 7.0 35 43-86 83-117 (230)
240 KOG2733 Uncharacterized membra 26.4 1.4E+02 0.003 25.5 4.6 53 39-93 98-150 (423)
241 KOG4518 Hydroxypyruvate isomer 26.4 3.1E+02 0.0068 21.3 6.6 107 39-152 18-141 (264)
242 COG0848 ExbD Biopolymer transp 26.3 2.5E+02 0.0053 20.1 5.6 55 100-163 79-133 (137)
243 PRK05718 keto-hydroxyglutarate 26.3 3.1E+02 0.0066 21.2 7.7 54 34-89 24-77 (212)
244 COG3413 Predicted DNA binding 26.3 2.2E+02 0.0048 21.6 5.6 25 34-61 156-180 (215)
245 PF07021 MetW: Methionine bios 26.3 2.4E+02 0.0052 21.6 5.6 105 41-170 5-119 (193)
246 smart00857 Resolvase Resolvase 26.2 1.6E+02 0.0035 20.5 4.6 45 106-150 51-96 (148)
247 KOG0059 Lipid exporter ABCA1 a 26.2 3.9E+02 0.0085 25.4 8.1 72 100-177 670-770 (885)
248 KOG1939 Oxoprolinase [Amino ac 26.2 1.5E+02 0.0033 28.0 5.1 56 32-89 163-222 (1247)
249 PTZ00170 D-ribulose-5-phosphat 25.9 3.1E+02 0.0068 21.2 11.4 111 35-172 17-134 (228)
250 PRK14338 (dimethylallyl)adenos 25.8 4.3E+02 0.0092 22.9 7.8 126 34-173 184-329 (459)
251 cd03768 SR_ResInv Serine Recom 25.7 1.8E+02 0.0038 19.7 4.6 44 106-151 42-86 (126)
252 PRK09462 fur ferric uptake reg 25.6 87 0.0019 22.4 3.1 21 133-153 50-70 (148)
253 COG2040 MHT1 Homocysteine/sele 25.6 3.8E+02 0.0082 22.0 8.6 94 35-129 41-156 (300)
254 PF11821 DUF3341: Protein of u 25.5 1.3E+02 0.0028 22.5 4.0 36 35-70 11-46 (173)
255 KOG3344 40s ribosomal protein 25.5 1.2E+02 0.0026 21.9 3.5 52 122-173 26-81 (150)
256 PF09639 YjcQ: YjcQ protein; 25.3 45 0.00099 21.8 1.4 18 136-153 25-42 (88)
257 PRK14865 rnpA ribonuclease P; 25.2 2.3E+02 0.005 19.4 5.1 20 100-119 95-114 (116)
258 TIGR02647 DNA conserved hypoth 25.2 71 0.0015 20.5 2.2 18 136-153 34-51 (77)
259 KOG0922 DEAH-box RNA helicase 25.2 91 0.002 28.4 3.6 39 112-153 414-452 (674)
260 PLN02229 alpha-galactosidase 25.2 1E+02 0.0022 26.6 3.8 44 14-60 60-108 (427)
261 cd03319 L-Ala-DL-Glu_epimerase 25.0 3.7E+02 0.008 21.7 12.5 121 35-180 134-257 (316)
262 PLN03228 methylthioalkylmalate 25.0 4.9E+02 0.011 23.1 10.3 132 25-173 227-363 (503)
263 TIGR03278 methan_mark_10 putat 24.8 4.4E+02 0.0096 22.5 9.1 76 100-180 54-134 (404)
264 PRK05283 deoxyribose-phosphate 24.8 3.7E+02 0.0079 21.6 9.3 105 31-147 20-126 (257)
265 TIGR01182 eda Entner-Doudoroff 24.7 2.8E+02 0.006 21.3 5.8 42 34-77 17-58 (204)
266 PRK09856 fructoselysine 3-epim 24.6 3.4E+02 0.0074 21.1 10.2 33 18-58 2-34 (275)
267 PRK09140 2-dehydro-3-deoxy-6-p 24.5 3.2E+02 0.007 20.8 12.9 42 34-77 19-60 (206)
268 cd05006 SIS_GmhA Phosphoheptos 24.5 95 0.0021 22.7 3.2 47 119-172 100-146 (177)
269 PRK08645 bifunctional homocyst 24.4 5.3E+02 0.012 23.3 12.6 94 35-129 41-147 (612)
270 PRK14866 hypothetical protein; 24.2 4.3E+02 0.0094 23.1 7.4 17 104-120 251-267 (451)
271 TIGR03597 GTPase_YqeH ribosome 24.2 4.2E+02 0.0091 22.1 9.2 138 17-170 28-172 (360)
272 cd01320 ADA Adenosine deaminas 24.2 1.9E+02 0.0041 23.4 5.2 25 100-124 66-93 (325)
273 PF01680 SOR_SNZ: SOR/SNZ fami 24.1 38 0.00083 25.7 0.9 19 111-129 87-105 (208)
274 TIGR00977 LeuA_rel 2-isopropyl 24.1 5.1E+02 0.011 23.0 8.1 107 31-150 17-136 (526)
275 PRK11858 aksA trans-homoaconit 23.8 4.4E+02 0.0096 22.1 8.9 26 33-58 22-47 (378)
276 PF04548 AIG1: AIG1 family; I 23.7 3.3E+02 0.0071 20.6 6.4 111 49-174 49-180 (212)
277 cd07491 Peptidases_S8_7 Peptid 23.7 1.7E+02 0.0038 22.9 4.7 54 35-88 87-144 (247)
278 TIGR02668 moaA_archaeal probab 23.6 3.8E+02 0.0083 21.4 11.4 25 33-57 39-63 (302)
279 PRK03739 2-isopropylmalate syn 23.6 5.4E+02 0.012 23.0 11.5 67 5-72 18-87 (552)
280 PRK14040 oxaloacetate decarbox 23.5 5.6E+02 0.012 23.2 9.8 113 35-164 95-207 (593)
281 PRK08385 nicotinate-nucleotide 23.5 3E+02 0.0065 22.3 6.0 61 109-179 192-257 (278)
282 cd07944 DRE_TIM_HOA_like 4-hyd 23.5 3.8E+02 0.0082 21.3 12.4 26 33-58 16-41 (266)
283 COG5310 Homospermidine synthas 23.4 3.9E+02 0.0084 22.7 6.6 104 10-132 10-125 (481)
284 COG2390 DeoR Transcriptional r 23.4 2.7E+02 0.0058 23.1 5.8 105 36-161 12-121 (321)
285 cd07939 DRE_TIM_NifV Streptomy 23.3 3.7E+02 0.008 21.1 10.0 79 38-131 111-192 (259)
286 TIGR03700 mena_SCO4494 putativ 23.2 4.3E+02 0.0094 21.8 8.2 26 34-59 79-104 (351)
287 PRK09057 coproporphyrinogen II 23.0 4.1E+02 0.0088 22.3 7.0 66 100-173 69-135 (380)
288 PLN02522 ATP citrate (pro-S)-l 22.9 2.3E+02 0.0049 25.8 5.6 29 63-91 234-262 (608)
289 cd08586 PI-PLCc_BcPLC_like Cat 22.9 3.6E+02 0.0079 21.6 6.4 66 43-115 39-121 (279)
290 cd00423 Pterin_binding Pterin 22.9 3.8E+02 0.0082 21.1 9.4 26 137-166 186-212 (258)
291 PRK11893 methionyl-tRNA synthe 22.9 1.4E+02 0.003 26.0 4.3 48 102-152 69-116 (511)
292 TIGR01584 citF citrate lyase, 22.9 2.7E+02 0.0059 24.5 5.9 91 63-178 229-325 (492)
293 PF02581 TMP-TENI: Thiamine mo 22.9 2.2E+02 0.0047 21.0 4.9 22 158-179 98-120 (180)
294 cd05014 SIS_Kpsf KpsF-like pro 22.8 1.1E+02 0.0025 20.7 3.1 45 121-172 48-92 (128)
295 cd07944 DRE_TIM_HOA_like 4-hyd 22.8 3.9E+02 0.0085 21.2 9.9 83 35-131 107-193 (266)
296 TIGR01212 radical SAM protein, 22.8 4.1E+02 0.009 21.5 9.6 67 100-173 91-158 (302)
297 cd02803 OYE_like_FMN_family Ol 22.8 4.1E+02 0.0089 21.4 11.8 91 78-179 206-309 (327)
298 PF01527 HTH_Tnp_1: Transposas 22.7 25 0.00055 21.7 -0.2 40 34-75 7-46 (76)
299 PRK03995 hypothetical protein; 22.6 4.1E+02 0.0089 21.4 6.6 81 15-120 181-264 (267)
300 PF01702 TGT: Queuine tRNA-rib 22.6 61 0.0013 25.2 1.9 28 122-152 203-230 (238)
301 PRK09485 mmuM homocysteine met 22.4 4.2E+02 0.0092 21.4 12.8 94 35-128 44-161 (304)
302 PF11372 DUF3173: Domain of un 22.4 90 0.0019 19.0 2.1 23 35-57 15-41 (59)
303 PRK01313 rnpA ribonuclease P; 22.3 2.9E+02 0.0063 19.5 6.6 62 77-147 47-113 (129)
304 PF04967 HTH_10: HTH DNA bindi 22.2 1.8E+02 0.004 17.1 5.7 19 40-60 6-24 (53)
305 COG5016 Pyruvate/oxaloacetate 22.0 5.3E+02 0.012 22.4 11.0 104 35-151 96-200 (472)
306 cd00885 cinA Competence-damage 22.0 2.8E+02 0.0061 20.4 5.3 44 39-85 21-65 (170)
307 PF04414 tRNA_deacylase: D-ami 22.0 3.2E+02 0.007 21.2 5.7 80 15-119 130-210 (213)
308 cd00452 KDPG_aldolase KDPG and 21.9 3.4E+02 0.0073 20.1 12.3 39 35-75 14-52 (190)
309 TIGR02384 RelB_DinJ addiction 21.9 87 0.0019 20.3 2.2 51 102-152 10-71 (83)
310 TIGR00463 gltX_arch glutamyl-t 21.9 3.7E+02 0.0081 24.2 6.7 59 101-171 140-198 (560)
311 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.9 1.4E+02 0.0031 20.1 3.5 32 136-172 60-91 (126)
312 PLN02808 alpha-galactosidase 21.8 1.1E+02 0.0024 26.0 3.4 44 14-60 29-77 (386)
313 PTZ00402 glutamyl-tRNA synthet 21.8 4.4E+02 0.0094 24.0 7.1 59 101-171 99-158 (601)
314 PF01978 TrmB: Sugar-specific 21.8 1.2E+02 0.0025 18.4 2.7 20 134-153 35-54 (68)
315 PRK02399 hypothetical protein; 21.7 2.5E+02 0.0054 24.2 5.4 41 107-153 199-239 (406)
316 PRK05927 hypothetical protein; 21.7 3.8E+02 0.0083 22.3 6.5 120 34-168 76-217 (350)
317 PF01890 CbiG_C: Cobalamin syn 21.6 2.8E+02 0.0062 19.2 5.6 35 100-134 12-46 (121)
318 PLN02907 glutamate-tRNA ligase 21.6 3.7E+02 0.0079 25.0 6.8 61 100-172 259-319 (722)
319 PRK09206 pyruvate kinase; Prov 21.6 5.6E+02 0.012 22.5 10.6 97 35-151 171-273 (470)
320 PRK13936 phosphoheptose isomer 21.6 1.8E+02 0.0039 21.9 4.2 46 120-172 111-156 (197)
321 COG2896 MoaA Molybdenum cofact 21.6 4.8E+02 0.01 21.7 9.4 24 34-57 43-66 (322)
322 PRK05339 PEP synthetase regula 21.5 4.4E+02 0.0095 21.3 6.6 75 35-125 14-91 (269)
323 PF01791 DeoC: DeoC/LacD famil 21.4 3.8E+02 0.0083 20.6 7.5 97 35-146 16-118 (236)
324 cd00671 ArgRS_core catalytic c 21.3 2.1E+02 0.0045 21.7 4.6 47 102-153 67-113 (212)
325 PF10171 DUF2366: Uncharacteri 21.2 2.2E+02 0.0047 21.4 4.4 39 121-161 78-116 (173)
326 cd00812 LeuRS_core catalytic c 21.2 1.5E+02 0.0033 24.1 4.0 48 102-151 68-116 (314)
327 PRK06582 coproporphyrinogen II 21.1 5.1E+02 0.011 21.9 7.7 66 100-173 76-142 (390)
328 PF13730 HTH_36: Helix-turn-he 21.0 83 0.0018 18.0 1.8 16 136-151 40-55 (55)
329 PRK00260 cysS cysteinyl-tRNA s 21.0 2.6E+02 0.0057 24.2 5.6 91 37-152 45-136 (463)
330 PF09851 SHOCT: Short C-termin 21.0 96 0.0021 16.0 1.8 17 136-152 2-18 (31)
331 COG2185 Sbm Methylmalonyl-CoA 20.9 3.4E+02 0.0073 19.7 8.2 90 39-152 28-118 (143)
332 cd00818 IleRS_core catalytic c 20.9 1.3E+02 0.0028 24.9 3.5 47 103-152 87-135 (338)
333 cd04104 p47_IIGP_like p47 (47- 20.8 3.6E+02 0.0078 20.0 8.1 81 64-144 94-181 (197)
334 COG0352 ThiE Thiamine monophos 20.7 2E+02 0.0042 22.3 4.3 45 124-178 83-128 (211)
335 PLN02623 pyruvate kinase 20.6 6.4E+02 0.014 22.9 9.4 97 34-151 276-378 (581)
336 COG2062 SixA Phosphohistidine 20.6 3.6E+02 0.0078 19.9 6.3 77 67-167 35-113 (163)
337 PRK12928 lipoyl synthase; Prov 20.6 4.6E+02 0.01 21.2 7.4 40 133-173 185-226 (290)
338 PRK06267 hypothetical protein; 20.5 5E+02 0.011 21.5 8.8 39 133-172 150-188 (350)
339 PRK07114 keto-hydroxyglutarate 20.5 4.2E+02 0.0091 20.6 6.2 36 35-72 25-60 (222)
340 PRK12558 glutamyl-tRNA synthet 20.4 2.7E+02 0.0059 24.2 5.5 48 100-152 48-95 (445)
341 PF01729 QRPTase_C: Quinolinat 20.3 1.1E+02 0.0025 22.6 2.8 51 120-179 100-153 (169)
342 PRK14336 (dimethylallyl)adenos 20.3 5E+02 0.011 22.1 7.1 41 133-173 256-298 (418)
343 PF02679 ComA: (2R)-phospho-3- 20.1 65 0.0014 25.6 1.5 87 36-129 83-169 (244)
344 PRK01732 rnpA ribonuclease P; 20.1 3E+02 0.0065 18.8 6.6 62 77-147 45-110 (114)
345 KOG1767 40S ribosomal protein 20.0 41 0.00089 23.0 0.3 25 138-168 77-101 (110)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.6e-43 Score=288.08 Aligned_cols=174 Identities=36% Similarity=0.488 Sum_probs=156.4
Q ss_pred ccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCC-CCCEE
Q 030178 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAE 82 (182)
Q Consensus 4 m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~-r~~~~ 82 (182)
|++++||++|++||+||||||.+|.. ....+.+++.++|++|+++|+|+||||+.||+|.+|+++|++|++.+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-CCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 88999999999999999999999764 22335557888999999999999999999999999999999999966 89999
Q ss_pred EEeccCCCcCC-CCC-CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeec
Q 030178 83 LATKFGIGIVD-GKY-GYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGV 160 (182)
Q Consensus 83 i~tK~~~~~~~-~~~-~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGv 160 (182)
|+||++....+ .+. ....++++|+++++.||+|||+||||||++||||+.++.++++++|.+|+++|+||+ +|+
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~----iG~ 155 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRY----IGV 155 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE----EEe
Confidence 99999887643 222 256899999999999999999999999999999999999999999999999999995 999
Q ss_pred cchhHHHHHHHhcC-CCeeeecC
Q 030178 161 VALVAKQMLLLFTN-IDFFIYQL 182 (182)
Q Consensus 161 s~~~~~~~~~l~~~-~~~~~~q~ 182 (182)
||++++++.++.+. .+++.+|.
T Consensus 156 S~~~~~~i~~a~~~~~~~~~~Q~ 178 (316)
T COG0667 156 SNYSAEQIAEALAVAAPIDSLQP 178 (316)
T ss_pred cCCCHHHHHHHHHhcCCceeecc
Confidence 99999999999987 48888884
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.3e-41 Score=271.75 Aligned_cols=174 Identities=34% Similarity=0.517 Sum_probs=157.8
Q ss_pred CccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCCCC
Q 030178 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRER 80 (182)
Q Consensus 3 ~m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r~~ 80 (182)
.|+|+++|++|++||++|||+|.+.. |+...++++++++|.+|+++|+||||||+.||++.||.++|+++++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 48999999999999999999974322 5555799999999999999999999999999999999999999999 56999
Q ss_pred EEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeec
Q 030178 81 AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGV 160 (182)
Q Consensus 81 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGv 160 (182)
++|+||.+... .+...+..+..+++++++.|+++|+++|||+|++||+|+..|+++++++|.+++++|+|+ |||+
T Consensus 90 vviaTK~~~~~-~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~----yiGl 164 (336)
T KOG1575|consen 90 VVIATKFGFDY-GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIR----YWGL 164 (336)
T ss_pred EEEEEEEeccC-CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceE----EEEe
Confidence 99999998765 222246678899999999999999999999999999999999999999999999999999 5999
Q ss_pred cchhHHHHHHHhcCCC--eeeecC
Q 030178 161 VALVAKQMLLLFTNID--FFIYQL 182 (182)
Q Consensus 161 s~~~~~~~~~l~~~~~--~~~~q~ 182 (182)
|+++++++++++..++ ++.+|+
T Consensus 165 Se~sa~~I~~a~~~~~~p~~s~Q~ 188 (336)
T KOG1575|consen 165 SEWSAEEIREAHAVAPIPIVAVQV 188 (336)
T ss_pred ccCCHHHHHHHHHhcCCCceEeee
Confidence 9999999999998766 988885
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.3e-40 Score=274.51 Aligned_cols=174 Identities=28% Similarity=0.472 Sum_probs=147.9
Q ss_pred CCccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCC--CcHHHHHHHhhccC---
Q 030178 2 ATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGP--HTNEILLGKAFKGG--- 76 (182)
Q Consensus 2 ~~m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~--g~~e~~lG~~l~~~--- 76 (182)
+.|++++||++|++||+||||||+. +|...+.+++.++++.|+++|+|+||||..||+ |.+|+.+|++|+..
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 4699999999999999999999973 343345677899999999999999999999995 88999999999862
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccc
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSIL 156 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~ 156 (182)
+|++++|+||++....++.+....+++.+++++++||++||++|||+|++|+|++..+++++|++|++|+++|+|++
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~--- 164 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALY--- 164 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE---
Confidence 59999999998753222222234679999999999999999999999999999998899999999999999999996
Q ss_pred eeeccchhHHHHHHHhc-----CCCeeeecC
Q 030178 157 YCGVVALVAKQMLLLFT-----NIDFFIYQL 182 (182)
Q Consensus 157 ~iGvs~~~~~~~~~l~~-----~~~~~~~q~ 182 (182)
||||||++++++++.+ .++++.+|+
T Consensus 165 -iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~ 194 (346)
T PRK09912 165 -VGISSYSPERTQKMVELLREWKIPLLIHQP 194 (346)
T ss_pred -EEecCCCHHHHHHHHHHHHhcCCCcEEeec
Confidence 9999999998875543 245566664
No 4
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.3e-41 Score=266.28 Aligned_cols=157 Identities=29% Similarity=0.334 Sum_probs=139.4
Q ss_pred CccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCCCC
Q 030178 3 TVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRER 80 (182)
Q Consensus 3 ~m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r~~ 80 (182)
.|.+.++ ++|.+||.||||||+++. .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++ ++|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 3566888 678889999999999732 22388999999999999999999999 99999999999 78999
Q ss_pred EEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--CCHHHHHHHHHHHhHcCcccccccee
Q 030178 81 AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ--TPIEVTVISLSLLPSFVKLKCSILYC 158 (182)
Q Consensus 81 ~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~--~~~~~~~~al~~l~~~G~ir~~~~~i 158 (182)
+||+||+|... .+++.+.+++++||++||+||+|||++|||.+. ..++|+|+||++++++|+||+ |
T Consensus 71 lFittKvw~~~--------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~----I 138 (280)
T COG0656 71 LFITTKVWPSD--------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRA----I 138 (280)
T ss_pred eEEEeecCCcc--------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccE----E
Confidence 99999999865 678999999999999999999999999999763 237899999999999999997 9
Q ss_pred eccchhHHHHHHHhcC--CCeeeecC
Q 030178 159 GVVALVAKQMLLLFTN--IDFFIYQL 182 (182)
Q Consensus 159 Gvs~~~~~~~~~l~~~--~~~~~~q~ 182 (182)
|||||+.++++++++. ...+.+||
T Consensus 139 GVSNF~~~~L~~l~~~~~~~p~~NQI 164 (280)
T COG0656 139 GVSNFGVEHLEELLSLAKVKPAVNQI 164 (280)
T ss_pred EeeCCCHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999973 44666775
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.8e-39 Score=264.90 Aligned_cols=169 Identities=24% Similarity=0.317 Sum_probs=144.8
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCCCCEEE
Q 030178 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAEL 83 (182)
Q Consensus 6 ~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r~~~~i 83 (182)
|++||++|++||+||||||+. +|...+++++.++++.|+++|||+||||+.||.|.+|+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 3444577889999999999999999999999999999999999986 36999999
Q ss_pred EeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccch
Q 030178 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
+||+++... .......+++.+++++++||++||+||||+|++|||++..+++++|++|++|+++|+||+ ||+|||
T Consensus 78 aTK~~~~~~-~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~----iGvSn~ 152 (317)
T TIGR01293 78 TTKIFWGGK-AETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMY----WGTSRW 152 (317)
T ss_pred EeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeE----EEecCC
Confidence 999864211 011134679999999999999999999999999999998889999999999999999996 999999
Q ss_pred hHHHHHHHhcC------CCeeeecC
Q 030178 164 VAKQMLLLFTN------IDFFIYQL 182 (182)
Q Consensus 164 ~~~~~~~l~~~------~~~~~~q~ 182 (182)
+.++++++... ++++.+|+
T Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~Q~ 177 (317)
T TIGR01293 153 SSMEIMEAYSVARQFNLIPPICEQA 177 (317)
T ss_pred CHHHHHHHHHHHHHcCCCCcceecc
Confidence 99998776431 35555664
No 6
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.7e-39 Score=261.23 Aligned_cols=159 Identities=33% Similarity=0.466 Sum_probs=140.2
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCCCCEEE
Q 030178 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAEL 83 (182)
Q Consensus 6 ~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r~~~~i 83 (182)
|++||++|++||.||||||++|..|+. .+.+++.++++.|+++|+|+||||+.||+|.+|+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999865553 477889999999999999999999999999999999999987 46999999
Q ss_pred EeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC---CCHHHHHHHHHHHhHcCccccccceeec
Q 030178 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ---TPIEVTVISLSLLPSFVKLKCSILYCGV 160 (182)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~---~~~~~~~~al~~l~~~G~ir~~~~~iGv 160 (182)
+||++.... ....+++.+++++++||++||++|||+|++|+|+.. .+++++|++|++|+++|+||+ ||+
T Consensus 80 ~TK~~~~~~----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~----iGv 151 (314)
T PLN02587 80 STKCGRYGE----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRF----IGI 151 (314)
T ss_pred EeccccCCC----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEE----EEe
Confidence 999985321 124679999999999999999999999999999743 346789999999999999996 999
Q ss_pred cchhHHHHHHHhc
Q 030178 161 VALVAKQMLLLFT 173 (182)
Q Consensus 161 s~~~~~~~~~l~~ 173 (182)
|||++++++.+.+
T Consensus 152 Sn~~~~~~~~~~~ 164 (314)
T PLN02587 152 TGLPLAIFTYVLD 164 (314)
T ss_pred cCCCHHHHHHHHH
Confidence 9999998877664
No 7
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.7e-39 Score=256.50 Aligned_cols=153 Identities=29% Similarity=0.347 Sum_probs=137.8
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc------CCCC
Q 030178 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG------GFRE 79 (182)
Q Consensus 6 ~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~------~~r~ 79 (182)
+++| ++|.+||.||||||+. ++.++.+.++.|++.||||||||..|+ ||+.+|++|++ ++|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 7899 8999999999999974 568899999999999999999999999 99999999996 6899
Q ss_pred CEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC----------------CCHHHHHHHHH
Q 030178 80 RAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ----------------TPIEVTVISLS 143 (182)
Q Consensus 80 ~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~----------------~~~~~~~~al~ 143 (182)
++||+||+|... +.++.++.++++||++||++|+|||++|||-.. .+..++|++|+
T Consensus 74 diFiTSKlw~~~--------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE 145 (300)
T KOG1577|consen 74 DIFITSKLWPTD--------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAME 145 (300)
T ss_pred hheeeeccCccc--------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHH
Confidence 999999999865 678999999999999999999999999999543 34678999999
Q ss_pred HHhHcCccccccceeeccchhHHHHHHHhcC--CCeeeecC
Q 030178 144 LLPSFVKLKCSILYCGVVALVAKQMLLLFTN--IDFFIYQL 182 (182)
Q Consensus 144 ~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~~--~~~~~~q~ 182 (182)
++++.|++|+ ||||||+..+++++++. ++-+.+||
T Consensus 146 ~~~~~Gl~rs----IGVSNF~~~~le~ll~~~ki~P~vnQv 182 (300)
T KOG1577|consen 146 KLVDEGLVRS----IGVSNFNIKQLEELLNLAKIKPAVNQV 182 (300)
T ss_pred HHHHcCCceE----eeeecCCHHHHHHHHhcCCCCCcccee
Confidence 9999999998 99999999999999984 33334553
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=9.3e-38 Score=251.96 Aligned_cols=170 Identities=26% Similarity=0.416 Sum_probs=143.6
Q ss_pred ceecCCCCcccCcceeccccCCC--CCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEE
Q 030178 6 RMKLGSQGLEVSAQGLGCMGMSA--LYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL 83 (182)
Q Consensus 6 ~~~lg~~g~~vs~l~lGt~~~~~--~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i 83 (182)
+++| +|++||+||||||++|. .||...+++++.++++.|+++|+|+||||..||+|.+|+.+|++++. .|++++|
T Consensus 9 ~~~l--~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i 85 (290)
T PRK10376 9 TFTL--GGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTI 85 (290)
T ss_pred ceec--CCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEE
Confidence 3455 39999999999999975 25655577889999999999999999999999999999999999975 5899999
Q ss_pred EeccCCCcCC-CCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-----CCCHHHHHHHHHHHhHcCccccccce
Q 030178 84 ATKFGIGIVD-GKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-----QTPIEVTVISLSLLPSFVKLKCSILY 157 (182)
Q Consensus 84 ~tK~~~~~~~-~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-----~~~~~~~~~al~~l~~~G~ir~~~~~ 157 (182)
+||++..... ..+....+++.+++++++||++|+++|||+|++|+++. ..+++++|++|++|+++|+||+
T Consensus 86 ~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~---- 161 (290)
T PRK10376 86 VTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRH---- 161 (290)
T ss_pred EeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeE----
Confidence 9998754321 12334578999999999999999999999999888421 2347899999999999999996
Q ss_pred eeccchhHHHHHHHhcCCCeeeecC
Q 030178 158 CGVVALVAKQMLLLFTNIDFFIYQL 182 (182)
Q Consensus 158 iGvs~~~~~~~~~l~~~~~~~~~q~ 182 (182)
||+|||+.++++++.+..++..+|+
T Consensus 162 iGvSn~~~~~l~~~~~~~~~~~~q~ 186 (290)
T PRK10376 162 IGLSNVTPTQVAEARKIAEIVCVQN 186 (290)
T ss_pred EEecCCCHHHHHHHHhhCCeEEEec
Confidence 9999999999999987777776664
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=8.1e-38 Score=257.93 Aligned_cols=171 Identities=26% Similarity=0.305 Sum_probs=143.4
Q ss_pred ccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCC-------CCcHHHHHHHhhcc-
Q 030178 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYG-------PHTNEILLGKAFKG- 75 (182)
Q Consensus 4 m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg-------~g~~e~~lG~~l~~- 75 (182)
|+|++||++|++||+||||||++|. ..+.+++.++++.|+++|+|+||||..|| .|.+|+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999998753 34678899999999999999999999998 37899999999986
Q ss_pred CCCCCEEEEeccCCCcCC-CC---CCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-----------------CCC
Q 030178 76 GFRERAELATKFGIGIVD-GK---YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-----------------QTP 134 (182)
Q Consensus 76 ~~r~~~~i~tK~~~~~~~-~~---~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-----------------~~~ 134 (182)
.+|++++|+||++..... .. .....+++.+++++++||++||++|||+|++|||++ ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 358999999998632110 00 012367999999999999999999999999999975 246
Q ss_pred HHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc------CCCeeeecC
Q 030178 135 IEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT------NIDFFIYQL 182 (182)
Q Consensus 135 ~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~------~~~~~~~q~ 182 (182)
++++|++|++|+++|+|++ ||+|||+.+++.++.. ..+++.+|+
T Consensus 157 ~~e~~~aL~~l~~~GkIr~----iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~ 206 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRY----IGVSNETAFGVMRYLHLAEKHDLPRIVTIQN 206 (346)
T ss_pred HHHHHHHHHHHHHCCCeEE----EEecCCCHHHHHHHHHHHHHcCCCCcEEecC
Confidence 7899999999999999996 9999999998876543 135666663
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=8.5e-38 Score=250.92 Aligned_cols=167 Identities=39% Similarity=0.514 Sum_probs=148.6
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCC-CCCEEEE
Q 030178 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAELA 84 (182)
Q Consensus 6 ~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~-r~~~~i~ 84 (182)
+++||++|+.||+||||||.++..+ .+.+++.++++.|+++|+|+||||+.||+|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999886544 46789999999999999999999999999999999999999966 9999999
Q ss_pred eccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCC-HHHHHHHHHHHhHcCccccccceeeccch
Q 030178 85 TKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTVISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 85 tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
||++...... ...+++.+++++++||++|+++|+|++++|+|+...+ ..++|++|++++++|+||+ ||+|||
T Consensus 78 tK~~~~~~~~---~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvS~~ 150 (285)
T cd06660 78 TKVGPRPGDG---RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRA----IGVSNF 150 (285)
T ss_pred eeecCCCCCC---CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccE----EEeeCC
Confidence 9998653211 3468999999999999999999999999999988766 8899999999999999996 999999
Q ss_pred hHHHHHHHhcC--CCeeeecC
Q 030178 164 VAKQMLLLFTN--IDFFIYQL 182 (182)
Q Consensus 164 ~~~~~~~l~~~--~~~~~~q~ 182 (182)
+.++++++.+. .+++.+|+
T Consensus 151 ~~~~l~~~~~~~~~~~~~~q~ 171 (285)
T cd06660 151 SAEQLEEALAAAGVPPAVNQV 171 (285)
T ss_pred CHHHHHHHHHhhCCCceEEec
Confidence 99999999875 56666664
No 11
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=5.4e-37 Score=235.55 Aligned_cols=172 Identities=29% Similarity=0.412 Sum_probs=153.5
Q ss_pred ccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCC--CCCE
Q 030178 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF--RERA 81 (182)
Q Consensus 4 m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~--r~~~ 81 (182)
|++.++++.|+++|++.+|+|++.. | ..+..+...+++.|++.|||+||-|++||.+.+|+++|.+|+-.| |+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~--~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-W--NMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-c--cCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7899999999999999999999854 3 345678999999999999999999999999999999999998844 9999
Q ss_pred EEEeccCCCcCCCCC----CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccce
Q 030178 82 ELATKFGIGIVDGKY----GYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILY 157 (182)
Q Consensus 82 ~i~tK~~~~~~~~~~----~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~ 157 (182)
.|+||.+........ -.+.++++|..++++||++|++||+|++++|+||+..+.+|+.+|+..|++.||+|+
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~---- 153 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRH---- 153 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeee----
Confidence 999999987543211 145789999999999999999999999999999999999999999999999999996
Q ss_pred eeccchhHHHHHHHhcCC--CeeeecC
Q 030178 158 CGVVALVAKQMLLLFTNI--DFFIYQL 182 (182)
Q Consensus 158 iGvs~~~~~~~~~l~~~~--~~~~~q~ 182 (182)
+|||||++.|++.+...+ +++.+|+
T Consensus 154 fGVSNf~p~Q~~LL~s~l~~~LvtNQl 180 (298)
T COG4989 154 FGVSNFNPAQFELLQSRLPFTLVTNQL 180 (298)
T ss_pred eecCCCCHHHHHHHHHhccchhhhcce
Confidence 999999999999998854 5677775
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.3e-35 Score=238.07 Aligned_cols=155 Identities=30% Similarity=0.382 Sum_probs=133.9
Q ss_pred cceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCCCCEEEEeccCCCcCCCC
Q 030178 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGIVDGK 95 (182)
Q Consensus 18 ~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r~~~~i~tK~~~~~~~~~ 95 (182)
+||||||++|.. ..+.+++.++++.|++.|+|+||||+.||+|.+|+.+|++|++ .+|++++|+||+. ....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~---~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVY---GDGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEE---SSSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccc---cccc
Confidence 589999998543 5689999999999999999999999999888999999999999 7899999999992 1222
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCC-HHHHHHHHHHHhHcCccccccceeeccchhHHHHHHH--h
Q 030178 96 YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLL--F 172 (182)
Q Consensus 96 ~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l--~ 172 (182)
+....+++.+++++++||++||++|+|+|++|+|+...+ ..++|++|++|+++|+||+ ||||||++++++.+ .
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~ 150 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRH----IGVSNFSPEQLEAALKI 150 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEE----EEEES--HHHHHHHHTC
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccc----ccccccccccccccccc
Confidence 335688999999999999999999999999999999988 8999999999999999996 99999999999999 4
Q ss_pred cCCCeeeecC
Q 030178 173 TNIDFFIYQL 182 (182)
Q Consensus 173 ~~~~~~~~q~ 182 (182)
...+++.+|+
T Consensus 151 ~~~~~~~~q~ 160 (283)
T PF00248_consen 151 GSIPPDVVQI 160 (283)
T ss_dssp TSS-ESEEEE
T ss_pred cccccccccc
Confidence 4567777763
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.2e-35 Score=235.57 Aligned_cols=148 Identities=30% Similarity=0.335 Sum_probs=132.0
Q ss_pred CCCccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCC
Q 030178 1 MATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFR 78 (182)
Q Consensus 1 ~~~m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r 78 (182)
|+..++.+| ++|+.||.||||||++ +.+++.++++.|++.|+|+||||+.|| +|+.+|++|+. .+|
T Consensus 1 ~~~~~~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R 68 (275)
T PRK11565 1 MANPTVIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAR 68 (275)
T ss_pred CCCCceEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCH
Confidence 555566778 8999999999999975 457899999999999999999999999 79999999987 358
Q ss_pred CCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-CHHHHHHHHHHHhHcCccccccce
Q 030178 79 ERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQT-PIEVTVISLSLLPSFVKLKCSILY 157 (182)
Q Consensus 79 ~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~-~~~~~~~al~~l~~~G~ir~~~~~ 157 (182)
++++|+||++. .+++.+++++++||++|+++|+|+|++|+|++.. ++.++|++|++|+++|+||+
T Consensus 69 ~~~~i~tK~~~----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~---- 134 (275)
T PRK11565 69 EELFITTKLWN----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKS---- 134 (275)
T ss_pred HHEEEEEEecC----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeE----
Confidence 99999999863 2467899999999999999999999999998753 47899999999999999996
Q ss_pred eeccchhHHHHHHHhcC
Q 030178 158 CGVVALVAKQMLLLFTN 174 (182)
Q Consensus 158 iGvs~~~~~~~~~l~~~ 174 (182)
||+|||++++++++++.
T Consensus 135 iGvSn~~~~~l~~~~~~ 151 (275)
T PRK11565 135 IGVCNFQIHHLQRLIDE 151 (275)
T ss_pred EeeccCCHHHHHHHHHh
Confidence 99999999999998753
No 14
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.3e-35 Score=233.91 Aligned_cols=136 Identities=22% Similarity=0.267 Sum_probs=122.8
Q ss_pred ccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCCCCEEEEeccCCCcC
Q 030178 15 EVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGIV 92 (182)
Q Consensus 15 ~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r~~~~i~tK~~~~~~ 92 (182)
+||.||||||++ +.+++.++++.|+++|+|+||||+.|| +|+.+|++|+. .+|++++|+||++..
T Consensus 2 ~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 689999999976 346799999999999999999999999 79999999985 469999999998642
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--CCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHH
Q 030178 93 DGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ--TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLL 170 (182)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~--~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~ 170 (182)
..+++.+++++++||++||++|+|+|++|||++. .+..++|++|++|+++|+||+ ||+|||+.+++++
T Consensus 69 ------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~----iGvSn~~~~~l~~ 138 (267)
T PRK11172 69 ------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTRE----IGISNFTIALMKQ 138 (267)
T ss_pred ------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCE----EEEccCCHHHHHH
Confidence 2678999999999999999999999999999763 567899999999999999996 9999999999988
Q ss_pred Hhc
Q 030178 171 LFT 173 (182)
Q Consensus 171 l~~ 173 (182)
+++
T Consensus 139 ~~~ 141 (267)
T PRK11172 139 AIA 141 (267)
T ss_pred HHH
Confidence 875
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=9.7e-35 Score=234.51 Aligned_cols=153 Identities=24% Similarity=0.277 Sum_probs=130.4
Q ss_pred CcccCcceeccccCCCC-------CCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEe
Q 030178 13 GLEVSAQGLGCMGMSAL-------YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELAT 85 (182)
Q Consensus 13 g~~vs~l~lGt~~~~~~-------~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~t 85 (182)
+++||+||||||++|.. |+ ..+++++.++++.|+++|+|+||||+.|| .+|+.+|++|+...+.+++++|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 33 45889999999999999999999999997 7999999999763345688888
Q ss_pred ccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CCH-HHHHHHHHHHhHcCccccccceeeccch
Q 030178 86 KFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPI-EVTVISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 86 K~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~-~~~~~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
|.. ..+++.+++++++||++||+||||+|++|+|++. .+. +++|++|++|+++|+||+ ||+|||
T Consensus 79 k~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~----iGvSn~ 144 (292)
T PRK14863 79 VRA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAK----IGVSAH 144 (292)
T ss_pred ccc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcce----Eeeecc
Confidence 742 1458999999999999999999999999999763 333 678999999999999996 999999
Q ss_pred hHHHHHHHhcCCCeeeecC
Q 030178 164 VAKQMLLLFTNIDFFIYQL 182 (182)
Q Consensus 164 ~~~~~~~l~~~~~~~~~q~ 182 (182)
+++++.++.+..++..+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~Q~ 163 (292)
T PRK14863 145 ASDDPVGVARRFKPDILQA 163 (292)
T ss_pred CHHHHHHHHhcCCCCEEEe
Confidence 9999988877656665663
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7.1e-35 Score=225.65 Aligned_cols=167 Identities=29% Similarity=0.362 Sum_probs=149.2
Q ss_pred CCccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCE
Q 030178 2 ATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERA 81 (182)
Q Consensus 2 ~~m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~ 81 (182)
..|+|+.+|++|++||+|+||...++..|+. .++++...-+..|+++|||+|||++.||++.+|+.+|.+++++||+.+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhe
Confidence 3589999999999999999999999888886 466776666666999999999999999999999999999999999999
Q ss_pred EEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC----CCHHHHHHHHHHHhHcCccccccce
Q 030178 82 ELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ----TPIEVTVISLSLLPSFVKLKCSILY 157 (182)
Q Consensus 82 ~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~----~~~~~~~~al~~l~~~G~ir~~~~~ 157 (182)
||+||++....+.....+++.+.+++++++||++|+++|+|++++|..+.. ..+.|+..+|++|+.+|++|.
T Consensus 99 yIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rf---- 174 (342)
T KOG1576|consen 99 YIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRF---- 174 (342)
T ss_pred eeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeE----
Confidence 999999976555445678999999999999999999999999999997654 235699999999999999995
Q ss_pred eeccchhHHHHHHHhc
Q 030178 158 CGVVALVAKQMLLLFT 173 (182)
Q Consensus 158 iGvs~~~~~~~~~l~~ 173 (182)
|||+.++.+-+...++
T Consensus 175 iGitgypldvl~~~ae 190 (342)
T KOG1576|consen 175 IGITGYPLDVLTECAE 190 (342)
T ss_pred eeecccchHHHHHHHh
Confidence 9999999998877775
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8.4e-33 Score=222.54 Aligned_cols=167 Identities=28% Similarity=0.318 Sum_probs=149.0
Q ss_pred ccceecCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEE
Q 030178 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL 83 (182)
Q Consensus 4 m~~~~lg~~g~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i 83 (182)
|.||++|++|.++|.+|||+|++...+...++.+.+.+++++|+++|||+||||..|..|.+|..+|+||+...|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 88999999999999999999998766777789999999999999999999999999977799999999999988999999
Q ss_pred EeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHH-----HHHHHHHHHhHcCcccccccee
Q 030178 84 ATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE-----VTVISLSLLPSFVKLKCSILYC 158 (182)
Q Consensus 84 ~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~-----~~~~al~~l~~~G~ir~~~~~i 158 (182)
+||+.... ..+++++++-++++|++|++||+|+|++|..+. ..++ ..++.+++++++|+||. +
T Consensus 81 aTKlp~~~-------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~----~ 148 (391)
T COG1453 81 ATKLPSWP-------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRN----A 148 (391)
T ss_pred EeecCCcc-------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEE----e
Confidence 99998643 267999999999999999999999999999877 3333 36899999999999995 9
Q ss_pred eccchh-HHHHHHHhc--CCCeeeecC
Q 030178 159 GVVALV-AKQMLLLFT--NIDFFIYQL 182 (182)
Q Consensus 159 Gvs~~~-~~~~~~l~~--~~~~~~~q~ 182 (182)
|+|.|+ .+.+.++.. .||||++|.
T Consensus 149 GFSfHgs~e~~~~iv~a~~~dfvqlq~ 175 (391)
T COG1453 149 GFSFHGSTEVFKEIVDAYPWDFVQLQY 175 (391)
T ss_pred eecCCCCHHHHHHHHhcCCcceEEeee
Confidence 999887 566666666 599999983
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=96.50 E-value=0.0028 Score=49.55 Aligned_cols=39 Identities=21% Similarity=0.089 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhcCCCee
Q 030178 136 EVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFTNIDFF 178 (182)
Q Consensus 136 ~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~~~~~~ 178 (182)
.+.|..||+++.+|+|-+ ||+|.|++.|++++...++++
T Consensus 156 kplwk~LE~lv~~~kI~~----lGvSDfda~qLe~Li~saqVv 194 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGT----LGVSDFDANQLERLISSAQVV 194 (285)
T ss_pred HHHHHHHHHHhccCceee----eeecccCHHHHHHHHhhhccc
Confidence 478999999999999998 999999999999999866554
No 19
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.09 E-value=5.1 Score=31.81 Aligned_cols=74 Identities=9% Similarity=-0.159 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc-CCC
Q 030178 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT-NID 176 (182)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~-~~~ 176 (182)
+.+.+.-.+..+-..+.++++.|-|=.+..+... .++.+++++.++|.++|.+- +=+|+-++...+++.+ .++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-----lpyc~~d~~~ak~l~~~G~~ 146 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-----LPYCTDDPVLAKRLEEAGCA 146 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-----EEEeCCCHHHHHHHHHcCCC
Confidence 4667777777777888889999988888776554 44789999999999999996 7788888888887765 344
Q ss_pred e
Q 030178 177 F 177 (182)
Q Consensus 177 ~ 177 (182)
+
T Consensus 147 ~ 147 (250)
T PRK00208 147 A 147 (250)
T ss_pred E
Confidence 3
No 20
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.56 E-value=5.8 Score=31.44 Aligned_cols=70 Identities=11% Similarity=-0.155 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+.+.+.-.+..+-..+.++++.|-|=.+..+... .++.+++++.++|.++|..- +=+|+-++...+++.+
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-----lpyc~dd~~~ar~l~~ 142 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-----LPYCTDDPVLAKRLED 142 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-----EEEeCCCHHHHHHHHH
Confidence 4566666666777888889999998888877654 44789999999999999996 7788888888887765
No 21
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=89.13 E-value=2.9 Score=35.48 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-------------C-HH---HHH-HHHHHHhHcCccccccceeecc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQT-------------P-IE---VTV-ISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~-------------~-~~---~~~-~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+.+.+++.++..+ +|+.+++.++.+.-- +.+ + .+ +.+ .+.+.|.+.|..+ .++|
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~-pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-----yeis 251 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLE-PGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEH-----YEIS 251 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceec-CCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCce-----eeee
Confidence 45666666666554 366777777666521 111 1 11 122 3567788888887 8888
Q ss_pred chhH
Q 030178 162 ALVA 165 (182)
Q Consensus 162 ~~~~ 165 (182)
||..
T Consensus 252 nfa~ 255 (400)
T PRK07379 252 NYAK 255 (400)
T ss_pred heEC
Confidence 8874
No 22
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=89.11 E-value=2.9 Score=36.08 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CCC----------C-C--CHH---HH-HHHHHHHhHcCccccccceeecc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDT----------Q-T--PIE---VT-VISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~----------~-~--~~~---~~-~~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+.+.+++.++..++ ++.+++++|.+.- |.. . . +.+ +. -.+.+.|.+.|..+ +++|
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~-----yeis 300 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQ-----LSNS 300 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeE-----Eeee
Confidence 678888888877664 8999999998774 211 0 0 111 12 24567788999987 9999
Q ss_pred chhH
Q 030178 162 ALVA 165 (182)
Q Consensus 162 ~~~~ 165 (182)
||..
T Consensus 301 ~far 304 (449)
T PRK09058 301 HWAR 304 (449)
T ss_pred eeec
Confidence 9975
No 23
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=88.63 E-value=3.7 Score=34.42 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CCC-----------CCCHH----HH-HHHHHHHhHcCccccccceeeccc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDT-----------QTPIE----VT-VISLSLLPSFVKLKCSILYCGVVA 162 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~-----------~~~~~----~~-~~al~~l~~~G~ir~~~~~iGvs~ 162 (182)
.+.+.+++.++..+ .++.+++.+|.+.- |.. ..+-+ +. ..+.+.|.+.|..+ +++||
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-----yeis~ 240 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR-----YELAS 240 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe-----eeeee
Confidence 57888888888766 47888888888763 210 01111 22 24567788999988 89999
Q ss_pred hhHH
Q 030178 163 LVAK 166 (182)
Q Consensus 163 ~~~~ 166 (182)
|...
T Consensus 241 fa~~ 244 (370)
T PRK06294 241 YAKP 244 (370)
T ss_pred eeCC
Confidence 9743
No 24
>PRK05660 HemN family oxidoreductase; Provisional
Probab=86.64 E-value=5.2 Score=33.61 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEe
Q 030178 101 DPAYVRAACEASLKRLDVDCIDLYYQ 126 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~l 126 (182)
+.+.+++.++..++ ++++++.+|.+
T Consensus 172 t~~~~~~~l~~~~~-l~p~~is~y~l 196 (378)
T PRK05660 172 SLEEALDDLRQAIA-LNPPHLSWYQL 196 (378)
T ss_pred CHHHHHHHHHHHHh-cCCCeEEeecc
Confidence 44444444444332 45555554444
No 25
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=86.53 E-value=5.5 Score=34.06 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=63.7
Q ss_pred cceeccccCCCC----CCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCC
Q 030178 18 AQGLGCMGMSAL----YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVD 93 (182)
Q Consensus 18 ~l~lGt~~~~~~----~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~ 93 (182)
++.+|-..|... .+..-+.+++.+++..+.+.|+.-+-.-=.|| .
T Consensus 150 RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg---------------------------l---- 198 (416)
T COG0635 150 RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG---------------------------L---- 198 (416)
T ss_pred EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC---------------------------C----
Confidence 666666655331 12333446666666666666666655555555 1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-----------CCCH----HHHHH-HHHHHhHcCccccccce
Q 030178 94 GKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-----------QTPI----EVTVI-SLSLLPSFVKLKCSILY 157 (182)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-----------~~~~----~~~~~-al~~l~~~G~ir~~~~~ 157 (182)
+..+.+.+.+.++..++ |+.++|.+|.+-.... ..|- .+.++ ..+.|.+.|...
T Consensus 199 ----P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~----- 268 (416)
T COG0635 199 ----PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQ----- 268 (416)
T ss_pred ----CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcE-----
Confidence 12556777777776664 5688999888764211 0111 13443 355667888855
Q ss_pred eeccchhH
Q 030178 158 CGVVALVA 165 (182)
Q Consensus 158 iGvs~~~~ 165 (182)
+|+|||.-
T Consensus 269 yeisnfa~ 276 (416)
T COG0635 269 YEISNFAK 276 (416)
T ss_pred EeechhcC
Confidence 99999986
No 26
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=86.10 E-value=11 Score=31.33 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CCC--------CCCHHHH-HHHHHHHhHcCccccccceeeccchhH
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDT--------QTPIEVT-VISLSLLPSFVKLKCSILYCGVVALVA 165 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~--------~~~~~~~-~~al~~l~~~G~ir~~~~~iGvs~~~~ 165 (182)
.+.+.+++.++..+ +++.+++.++.+.- |.. ..+.++. ..+.+.|.+.|..+ +++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~-----yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQ-----YEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcE-----EEeehhhC
Confidence 56777777776544 47778887777653 110 0111233 34567778889887 89999875
No 27
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=85.06 E-value=6.7 Score=30.34 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCC-cHH---HHHHHhhccCCCCCEEEEecc--CCCcCCCCCCCCCCHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPH-TNE---ILLGKAFKGGFRERAELATKF--GIGIVDGKYGYHGDPAYVRAA 108 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g-~~e---~~lG~~l~~~~r~~~~i~tK~--~~~~~~~~~~~~~~~~~i~~~ 108 (182)
++++...+.+.+.++|..|+=|+..|+++ ... +.+.+.++ +. +..|. +. .+.+...+-
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi----------rt~~~a~~~ 193 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV----------RTAEDAIAM 193 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC----------CCHHHHHHH
Confidence 55778899999999999999999999733 222 33444432 22 23332 22 357888888
Q ss_pred HHHHHHHhCCCc
Q 030178 109 CEASLKRLDVDC 120 (182)
Q Consensus 109 ~~~sL~~Lg~~~ 120 (182)
++..-.++|+++
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 888889999864
No 28
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=84.37 E-value=6.3 Score=28.39 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
+...+..+.+...++|++.|=.-+.|. .++.+|+-. -.||.
T Consensus 28 P~r~sy~V~kyL~~~GY~ViPVNP~~~---~~eiLG~k~------------------------------------y~sL~ 68 (140)
T COG1832 28 PDRPSYRVAKYLQQKGYRVIPVNPKLA---GEEILGEKV------------------------------------YPSLA 68 (140)
T ss_pred CCccHHHHHHHHHHCCCEEEeeCcccc---hHHhcCchh------------------------------------hhcHH
Confidence 455688999999999999998777665 566666432 11222
Q ss_pred HhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 115 RLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.+- +.+|++-+-++ .+.+.+-.+++.+.| ++.+|.=.|+.|-.+.+..+..
T Consensus 69 dIp-e~IDiVdvFR~-----~e~~~~i~~eal~~~-~kv~W~QlGi~n~ea~~~~~~a 119 (140)
T COG1832 69 DIP-EPIDIVDVFRR-----SEAAPEVAREALEKG-AKVVWLQLGIRNEEAAEKARDA 119 (140)
T ss_pred hCC-CCCcEEEEecC-----hhhhHHHHHHHHhhC-CCeEEEecCcCCHHHHHHHHHh
Confidence 333 46777666654 345667777777777 7777888888887766665544
No 29
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=83.79 E-value=21 Score=28.64 Aligned_cols=109 Identities=8% Similarity=-0.093 Sum_probs=65.7
Q ss_pred cceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCC
Q 030178 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYG 97 (182)
Q Consensus 18 ~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~ 97 (182)
.||++.|.+..+.+...++....+-....+.+..|.+..-..|=.-.+++.+-++.++ ..+++.-+.|....-. +
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-~p~~FrFsvK~~~~iT--H-- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-TPDDFRFSVKAPRAIT--H-- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-CCCCeEEEEEeccccc--c--
Confidence 4677777765544443344344444455567778887654433333466677788876 6778999999864320 0
Q ss_pred CCCCH---HHHHHHHHHHHHHhCCCccceEEeecCCCC
Q 030178 98 YHGDP---AYVRAACEASLKRLDVDCIDLYYQHRIDTQ 132 (182)
Q Consensus 98 ~~~~~---~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~ 132 (182)
....+ ..+.+.+.+.++.|| +.+..+++..|..-
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 79 QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 01112 234444555556777 58999999998654
No 30
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=83.49 E-value=6.2 Score=34.03 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEe-ecCCC----------CC-CHHH----HHHHHHHHhHcCccccccceeeccch
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQ-HRIDT----------QT-PIEV----TVISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~l-h~~d~----------~~-~~~~----~~~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
.+.+.+.+.++..+ +++.+++.++.+ |.|.. .. +.++ .-.+.+.|.+.|..+ +|+++|
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-----~~~~~f 289 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-----IGLDHF 289 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-----Eeccce
Confidence 56788888777666 588888888765 22210 01 1222 234667888999987 999999
Q ss_pred hH
Q 030178 164 VA 165 (182)
Q Consensus 164 ~~ 165 (182)
..
T Consensus 290 ar 291 (453)
T PRK13347 290 AL 291 (453)
T ss_pred eC
Confidence 74
No 31
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=82.55 E-value=1.6 Score=36.79 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=62.5
Q ss_pred HcCCCeee-----ccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcC------CCCCCCCCCHHHHHHHHHHHHHHh
Q 030178 48 NSGITFLD-----TSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIV------DGKYGYHGDPAYVRAACEASLKRL 116 (182)
Q Consensus 48 ~~G~~~~D-----ta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~------~~~~~~~~~~~~i~~~~~~sL~~L 116 (182)
+.+...|| ++..+. .++..+.+.++.....=+||-||+...-. +.........+.|++.+.+.|++-
T Consensus 109 ~~~~~~yD~fiii~s~rf~--~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFT--ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp HTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred HccccccCEEEEEeCCCCc--hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 45666666 344444 68888899998866666889999865211 111111123467889999999999
Q ss_pred CCCccceEEeecCCCC-CCHHHHHHHHH----HHhHcCccccccceeeccchhHHHHH
Q 030178 117 DVDCIDLYYQHRIDTQ-TPIEVTVISLS----LLPSFVKLKCSILYCGVVALVAKQML 169 (182)
Q Consensus 117 g~~~lDl~~lh~~d~~-~~~~~~~~al~----~l~~~G~ir~~~~~iGvs~~~~~~~~ 169 (182)
|+....+|++.+.+.. .++....++|+ ..+....+.+ +.|.+.+.++
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~flls------Lp~is~~~I~ 238 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLS------LPNISEAAIE 238 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHH------S---SHHHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHH------hHHhhHHHHH
Confidence 9999999999998764 34544444443 4444444433 5666666553
No 32
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.00 E-value=10 Score=32.19 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHH
Q 030178 36 EPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKR 115 (182)
Q Consensus 36 ~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (182)
......++++|++.|++++|||.... ....+.... .+-.+.+..-.|..+ + .+.-.....+++.-.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dP--G-----i~nv~a~~a~~~~~~- 143 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDP--G-----ITNVLAAYAAKELFD- 143 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCc--c-----hHHHHHHHHHHHhhc-
Confidence 35566999999999999999997554 222222222 234555555555432 1 222222333332222
Q ss_pred hCCCccceEEeecCCCC
Q 030178 116 LDVDCIDLYYQHRIDTQ 132 (182)
Q Consensus 116 Lg~~~lDl~~lh~~d~~ 132 (182)
.++++|+|..+.|+..
T Consensus 144 -~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 -EIESIDIYVGGLGEHG 159 (389)
T ss_pred -cccEEEEEEecCCCCC
Confidence 5889999999998765
No 33
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=80.26 E-value=15 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.054 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCC-----------------HHHHH-HHHHHHhHcCccccccceeecc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-----------------IEVTV-ISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-----------------~~~~~-~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+.+.+++.++..+ +++.+++.++.+.- .+.++ ..+.+ .+.+.|.+.|..+ +++|
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~~-~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~-----ye~s 244 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALIV-EDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW-----YEVS 244 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeeec-CCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCe-----eeec
Confidence 56777777777554 47888888777652 22111 11222 3345567788876 8888
Q ss_pred chhH
Q 030178 162 ALVA 165 (182)
Q Consensus 162 ~~~~ 165 (182)
||..
T Consensus 245 ~fa~ 248 (375)
T PRK05628 245 NWAR 248 (375)
T ss_pred cccC
Confidence 8874
No 34
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=79.75 E-value=12 Score=29.84 Aligned_cols=87 Identities=14% Similarity=0.049 Sum_probs=57.3
Q ss_pred cCcceeccccCCCCCCCCCChH-HHHHHHHHHHHcCCCeeeccCCCCCC-cHH---HHHHHhhccCC-CCCEEEEecc--
Q 030178 16 VSAQGLGCMGMSALYGPPKPEP-DMIALIRHAINSGITFLDTSDIYGPH-TNE---ILLGKAFKGGF-RERAELATKF-- 87 (182)
Q Consensus 16 vs~l~lGt~~~~~~~~~~~~~~-~~~~~l~~a~~~G~~~~Dta~~Yg~g-~~e---~~lG~~l~~~~-r~~~~i~tK~-- 87 (182)
+-++.+=|..+ +++ +...+.+.++++|..|+=|+..|+++ ... +++-+.+++.. .++ +.-|.
T Consensus 133 ~lKVIlEt~~L--------~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsG 202 (257)
T PRK05283 133 LLKVIIETGEL--------KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAG 202 (257)
T ss_pred eEEEEEecccc--------CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccC
Confidence 34556666544 445 48899999999999999999999754 222 33444443210 122 33333
Q ss_pred CCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccc
Q 030178 88 GIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCID 122 (182)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lD 122 (182)
|. .+.+...+-++..-+.||.++++
T Consensus 203 GI----------rt~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 203 GV----------RTAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred CC----------CCHHHHHHHHHHHHHHhChhhcC
Confidence 32 45788888899999999987665
No 35
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=78.58 E-value=17 Score=30.83 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CCC----------C-CC-HH---HH-HHHHHHHhHcCccccccceeeccc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDT----------Q-TP-IE---VT-VISLSLLPSFVKLKCSILYCGVVA 162 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~----------~-~~-~~---~~-~~al~~l~~~G~ir~~~~~iGvs~ 162 (182)
.+.+.+++.++..++ |+.++|.+|.+.- |+. . .+ .+ +. -.+.+.|.+.|..+ .++||
T Consensus 174 qt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-----yeis~ 247 (390)
T PRK06582 174 QTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-----YEISN 247 (390)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-----eecee
Confidence 678888898888886 7889999887763 211 0 11 11 22 24566778889987 89999
Q ss_pred hhH
Q 030178 163 LVA 165 (182)
Q Consensus 163 ~~~ 165 (182)
|..
T Consensus 248 fa~ 250 (390)
T PRK06582 248 YAK 250 (390)
T ss_pred eeC
Confidence 874
No 36
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=78.10 E-value=16 Score=30.50 Aligned_cols=60 Identities=8% Similarity=0.012 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee-cCCC----------C-CC-HH---HH-HHHHHHHhHcCccccccceeeccc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQH-RIDT----------Q-TP-IE---VT-VISLSLLPSFVKLKCSILYCGVVA 162 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh-~~d~----------~-~~-~~---~~-~~al~~l~~~G~ir~~~~~iGvs~ 162 (182)
.+.+.+++.++.. .+++.+++.++.+. .|.. . .+ .+ +. -.+++.|.+.|..+ ++++|
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~-----~~~~~ 237 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQ-----YEISN 237 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcE-----eeeee
Confidence 5678888877764 55888888777543 1210 0 01 11 22 34677888899887 89999
Q ss_pred hhH
Q 030178 163 LVA 165 (182)
Q Consensus 163 ~~~ 165 (182)
|..
T Consensus 238 fa~ 240 (377)
T PRK08599 238 FAK 240 (377)
T ss_pred eeC
Confidence 973
No 37
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=78.00 E-value=35 Score=28.83 Aligned_cols=125 Identities=13% Similarity=0.027 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHHHHcCCCee-eccCCCCCCcHHHHHHHhhcc----C--CCCCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFL-DTSDIYGPHTNEILLGKAFKG----G--FRERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~-Dta~~Yg~g~~e~~lG~~l~~----~--~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
+.+....+.+.+...|++.| +|.. -. ..+. +-++++. . .+....+.-.+--..........+.++.+++
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~-t~--~~~~-~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~ 150 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLI-TQ--PDEN-IKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIRE 150 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeecc-CC--CHHH-HHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhC
Confidence 45778888899999999854 5553 33 1222 2233332 1 1122233333311111111112234444433
Q ss_pred H----HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 108 A----CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 108 ~----~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
- +++.++.-+ +.+-++.+ .|+.+ ...+.++.|.++|.+=+ +|=||-+.+|+.+..+
T Consensus 151 p~~~~~~~~~~~~~-~~i~~vTl---APE~~--~~~~~i~~l~~~gi~vs----~GHs~A~~~~~~~a~~ 210 (380)
T TIGR00221 151 PDVELFKKFLCEAG-GVITKVTL---APEED--QHFELIRHLKDAGIIVS----AGHTNATYELAKAAFK 210 (380)
T ss_pred cCHHHHHHHHHhcC-CCEEEEEE---CCCCC--ChHHHHHHHHHCCeEEE----eeCCCCCHHHHHHHHH
Confidence 2 222222211 22333333 23322 45788899999999998 9999999999988765
No 38
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=77.85 E-value=11 Score=27.13 Aligned_cols=67 Identities=7% Similarity=0.059 Sum_probs=50.2
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHh--CCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL--DVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L--g~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
+|=.+.|+-|++. ...+..|++.+.++.+.. .....|++++..+....++.+....|.++.++-+-+
T Consensus 46 ~RlG~sVSKKvg~---------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~~~~~ 114 (138)
T PRK00730 46 CKVGITVSKKFGK---------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPEALPK 114 (138)
T ss_pred ceEEEEEeccccc---------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHHHhhh
Confidence 4667888888764 266888888888888766 345789999999887777888888887777665444
No 39
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=76.88 E-value=13 Score=32.11 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee-cCC----------CCCC-HHH---H-HHHHHHHhHcCccccccceeeccch
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQH-RID----------TQTP-IEV---T-VISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh-~~d----------~~~~-~~~---~-~~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
.+.+.+++.++..++ ++.+++.++.+- .|. ...+ .++ . -.+.+.|.+.|..+ ++++||
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~-----~~~~~f 288 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQF-----IGMDHF 288 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEE-----Eeccce
Confidence 678888888886655 888888888762 111 0011 222 2 24566777889887 999999
Q ss_pred hH
Q 030178 164 VA 165 (182)
Q Consensus 164 ~~ 165 (182)
..
T Consensus 289 a~ 290 (455)
T TIGR00538 289 AK 290 (455)
T ss_pred eC
Confidence 85
No 40
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=76.80 E-value=17 Score=31.19 Aligned_cols=59 Identities=12% Similarity=-0.057 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCC--------HH---HHH-HHHHHHhHcCccccccceeeccchhH
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP--------IE---VTV-ISLSLLPSFVKLKCSILYCGVVALVA 165 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~--------~~---~~~-~al~~l~~~G~ir~~~~~iGvs~~~~ 165 (182)
.+.+.+.+.++..+ +++.+++.++.+.-. +.++ .+ +.+ .+.+.|.+.|..+ ++++||..
T Consensus 205 qt~e~~~~~l~~~~-~l~~~~is~y~L~~~-~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~-----yei~~far 275 (430)
T PRK08208 205 QTHASWMESLDQAL-VYRPEELFLYPLYVR-PLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ-----TSMRMFRR 275 (430)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEcccccc-CCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE-----Eeecceec
Confidence 66788888887776 478888888876532 1111 11 223 4567778888877 88888865
No 41
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=76.50 E-value=24 Score=29.46 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCC-------------H----HHHH-HHHHHHhHcCccccccceeecc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP-------------I----EVTV-ISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-------------~----~~~~-~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+.+.+++.++..+ +++.+++.++.+.- .+.++ . .+.+ .+.+.|.+.|..+ +++|
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~~-~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~-----ye~~ 235 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLII-EEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQ-----YEIS 235 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccEe-cCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcE-----Eeee
Confidence 55677777666654 46777777765541 11111 1 1122 3446677778877 7888
Q ss_pred chhH
Q 030178 162 ALVA 165 (182)
Q Consensus 162 ~~~~ 165 (182)
||..
T Consensus 236 ~fa~ 239 (374)
T PRK05799 236 NFAK 239 (374)
T ss_pred eeEC
Confidence 8874
No 42
>PRK07094 biotin synthase; Provisional
Probab=76.20 E-value=22 Score=28.98 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCC-CCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (182)
+.++..+.++.+.+.|++.|--.....+-.....+-+.++...+ .++.+..-.+. .+.+.++ .|
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~----------~~~e~l~-----~L 135 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE----------RSYEEYK-----AW 135 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC----------CCHHHHH-----HH
Confidence 67788888999999999987543211111112233344444222 23433321211 2233332 34
Q ss_pred HHhCCCccceEEeec--------CCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 114 KRLDVDCIDLYYQHR--------IDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~--------~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+..|++.+-+ -+.. ..+....++.+++++.+++.|.--+...-+|+...+.+++.+.++
T Consensus 136 k~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 136 KEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred HHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 5566554331 1111 112345788899999999999754445557877777777655443
No 43
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=75.98 E-value=43 Score=27.52 Aligned_cols=124 Identities=15% Similarity=0.006 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHHHc-CCCeeeccCCCCCCc--HHHHHH---HhhccCC-CCCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 35 PEPDMIALIRHAINS-GITFLDTSDIYGPHT--NEILLG---KAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~-G~~~~Dta~~Yg~g~--~e~~lG---~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
+.++..++++..-+. |++.+--+. |+.. +.+.+. +.+++.+ ...+-+.|+..... +..+.+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~----------p~rit~ 187 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD----------PARVTP 187 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC----------hhhcCH
Confidence 557788888877655 887654332 2111 122233 3333333 23456777764322 333444
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcccccccee--eccchhHHHHHHHhc
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYC--GVVALVAKQMLLLFT 173 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~i--Gvs~~~~~~~~~l~~ 173 (182)
.+-+.|.+.|.. ..+.+|...+..-..++.++++.|++.|..-..-.-+ |+ |.+.+.+.++.+
T Consensus 188 ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 188 ALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 555566666742 3577887654433578999999999999632110012 54 788777766654
No 44
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=75.59 E-value=22 Score=28.13 Aligned_cols=110 Identities=17% Similarity=0.087 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHh--------------------hccCCCCCEEEEeccCCCcC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKA--------------------FKGGFRERAELATKFGIGIV 92 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~--------------------l~~~~r~~~~i~tK~~~~~~ 92 (182)
..+.++..++.+++-+.|+.||-|.-.-. +-.++-+. +++ ....++|+|=.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~----- 122 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGM----- 122 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT-----
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCC-----
Confidence 45789999999999999999998774222 22222111 001 12224444322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CCHHH-HHHHHHHHhHcCccccccceeeccchhHH
Q 030178 93 DGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEV-TVISLSLLPSFVKLKCSILYCGVVALVAK 166 (182)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~-~~~al~~l~~~G~ir~~~~~iGvs~~~~~ 166 (182)
.+.+.|+++++...++- .-++.++|+.... .++++ -+..|..|++.=-+. +|.|.|+..
T Consensus 123 -------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~-----vG~SDHt~g 183 (241)
T PF03102_consen 123 -------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVP-----VGYSDHTDG 183 (241)
T ss_dssp ---------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSE-----EEEEE-SSS
T ss_pred -------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCC-----EEeCCCCCC
Confidence 45677888777664443 4688999987433 33443 466677776433354 999998753
No 45
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=74.29 E-value=6.4 Score=31.11 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCCcccCcceeccccCCCCCCCCC--ChHHHHHHHHH----HHHcCCCeeeccC--CCCCCcHHHHHHHhhcc-------
Q 030178 11 SQGLEVSAQGLGCMGMSALYGPPK--PEPDMIALIRH----AINSGITFLDTSD--IYGPHTNEILLGKAFKG------- 75 (182)
Q Consensus 11 ~~g~~vs~l~lGt~~~~~~~~~~~--~~~~~~~~l~~----a~~~G~~~~Dta~--~Yg~g~~e~~lG~~l~~------- 75 (182)
.+|+.+|-+||...+- .++|..+ .++++.++++. |.+.|||+|--|. .|-...+++...+++..
T Consensus 65 etgv~ipSmClSaHRR-fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRR-FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 5799999999998864 2255432 34555555555 5577999998875 22222344445555544
Q ss_pred CCCCCEEEEeccC
Q 030178 76 GFRERAELATKFG 88 (182)
Q Consensus 76 ~~r~~~~i~tK~~ 88 (182)
..+-++.++.-+.
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 3456666665543
No 46
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=73.88 E-value=30 Score=27.09 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=55.4
Q ss_pred cCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCC
Q 030178 16 VSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGK 95 (182)
Q Consensus 16 vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~ 95 (182)
+-++.+-|.-+ ++++...+.+.++++|..|+-||..+..+.+-..--+.+++.-..++=|-.-.+.
T Consensus 127 ~lKVIlEt~~L--------t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~vg~~vgvKaSGGI------ 192 (228)
T COG0274 127 VLKVILETGLL--------TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETVGGRVGVKASGGI------ 192 (228)
T ss_pred eEEEEEecccc--------CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhccCceeeccCCc------
Confidence 44666777654 6677899999999999999999997765432222222333311121211111222
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCC
Q 030178 96 YGYHGDPAYVRAACEASLKRLDVD 119 (182)
Q Consensus 96 ~~~~~~~~~i~~~~~~sL~~Lg~~ 119 (182)
.+.++...-++....|+|++
T Consensus 193 ----rt~eda~~~i~aga~RiGtS 212 (228)
T COG0274 193 ----RTAEDAKAMIEAGATRIGTS 212 (228)
T ss_pred ----CCHHHHHHHHHHhHHHhccc
Confidence 56888999999999999975
No 47
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=73.79 E-value=49 Score=27.20 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHH--------
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYV-------- 105 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i-------- 105 (182)
.+.++..+.++.+.+.|++.|-......+......+-+.++...+...-+ ++.. .++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i--~~~~----------~s~~ei~~~~~~~g 139 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHI--HIHS----------FSPVEIVYIAKKEG 139 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc--CCCC----------CCHHHHHHHhccCC
Confidence 46788899999999999998876544332211222223333211111011 1110 112211
Q ss_pred --HHHHHHHHHHhCCCccceE--E-e-----ecCCC-CCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHH
Q 030178 106 --RAACEASLKRLDVDCIDLY--Y-Q-----HRIDT-QTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 106 --~~~~~~sL~~Lg~~~lDl~--~-l-----h~~d~-~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l 171 (182)
.+..-+.|++.|+++++.. . + +...+ ..+.++.+++++.+++.|.--+...-+|+ ..+.+++.+.
T Consensus 140 ~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~~ 215 (340)
T TIGR03699 140 LSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIEH 215 (340)
T ss_pred CCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHHH
Confidence 1334455667788776521 0 1 11111 23577889999999999976655566786 6665555433
No 48
>PRK09061 D-glutamate deacylase; Validated
Probab=73.69 E-value=42 Score=29.46 Aligned_cols=106 Identities=12% Similarity=0.011 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 030178 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV 118 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (182)
..++++.|++.|...|-+...|.++.+...+-+.++...+.+..+......... .+.....+++++.++....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~-------~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN-------VDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc-------CCchhHHHHHHHHHHHHHH
Confidence 677888899999999987666755555555656665544455666665543210 1112223344444433222
Q ss_pred CccceEEeecCCC-CCCHHHHHHHHHHHhHcCcc
Q 030178 119 DCIDLYYQHRIDT-QTPIEVTVISLSLLPSFVKL 151 (182)
Q Consensus 119 ~~lDl~~lh~~d~-~~~~~~~~~al~~l~~~G~i 151 (182)
.-.-+.+.|-... ..+..+..+.+++++++|.-
T Consensus 244 ~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~ 277 (509)
T PRK09061 244 TGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLD 277 (509)
T ss_pred hCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCc
Confidence 2233666675432 23457788999999999843
No 49
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=73.46 E-value=15 Score=28.63 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCC-CcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGP-HTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~-g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (182)
++++..++.+.+.+.|..|+=|+..|++ |.+.+.+....+. -+.++-|-.-.+. .+.++..+-++..-
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGI----------rt~~~a~~~i~aGA 202 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGI----------RTLEDALAMIEAGA 202 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCc----------CCHHHHHHHHHcCc
Confidence 6788999999999999999999999964 4444444333222 2233333222333 34667777776666
Q ss_pred HHhCCC
Q 030178 114 KRLDVD 119 (182)
Q Consensus 114 ~~Lg~~ 119 (182)
.++|++
T Consensus 203 ~riGtS 208 (221)
T PRK00507 203 TRLGTS 208 (221)
T ss_pred ceEccC
Confidence 666664
No 50
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=72.58 E-value=47 Score=26.47 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
..+.++..++++...+.|++.++...
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 34668899999999999999999864
No 51
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=71.74 E-value=48 Score=26.24 Aligned_cols=131 Identities=12% Similarity=-0.082 Sum_probs=68.3
Q ss_pred CcceeccccCCCCCCCCCChHHHHHHHHHHHHc-CCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEE-EeccCCCcCCC
Q 030178 17 SAQGLGCMGMSALYGPPKPEPDMIALIRHAINS-GITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL-ATKFGIGIVDG 94 (182)
Q Consensus 17 s~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~-G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i-~tK~~~~~~~~ 94 (182)
|+|.+||..+. + .++++.|+++ |-..+=+|----+-.....-...+.-.++.++.+ -+-.+
T Consensus 9 SRL~lGTgky~-------s----~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaG------ 71 (247)
T PF05690_consen 9 SRLILGTGKYP-------S----PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAG------ 71 (247)
T ss_dssp -SEEEE-STSS-------S----HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT------
T ss_pred cceEEecCCCC-------C----HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCC------
Confidence 68999998762 2 2455566654 6665544421110001000112233345555442 22233
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 95 KYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 95 ~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+.+.+.-.+..+-..+.++++.|-|=.+..+... .+..++++|-++|.++|-+= +=-++-++--.+++.+
T Consensus 72 ----c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-----lPY~~~D~v~akrL~d 142 (247)
T PF05690_consen 72 ----CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-----LPYCTDDPVLAKRLED 142 (247)
T ss_dssp -----SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-----EEEE-S-HHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-----eecCCCCHHHHHHHHH
Confidence 3556666667777888899998888777766554 34679999999999999874 4455555555555543
No 52
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=71.03 E-value=26 Score=30.16 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CC----------CCC-CHH---HHH-HHHHHHhHcCccccccceeeccch
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-ID----------TQT-PIE---VTV-ISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d----------~~~-~~~---~~~-~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
.+.+.+++.++..+ +++.+++.++.+-. |. ... +.+ +.+ .+.+.|.+.|..+ +++|||
T Consensus 215 qt~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-----ye~s~f 288 (453)
T PRK09249 215 QTPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-----IGMDHF 288 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-----Eeccce
Confidence 67888888887766 48888888887541 11 001 112 222 4567788899998 999998
Q ss_pred hH
Q 030178 164 VA 165 (182)
Q Consensus 164 ~~ 165 (182)
..
T Consensus 289 ar 290 (453)
T PRK09249 289 AL 290 (453)
T ss_pred eC
Confidence 74
No 53
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=70.44 E-value=29 Score=26.78 Aligned_cols=121 Identities=10% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHHHcCCCeeecc-CCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHH
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTS-DIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta-~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 111 (182)
..+.++..++++...+.|+..|++. +..++ ...+.+.+..+..+...+...+. .....++..++.
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCR-------------ANEEDIERAVEA 75 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEE-------------SCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeee-------------ehHHHHHHHHHh
Confidence 3577889999999999999999999 33331 12233444433323322222211 235566666654
Q ss_pred HHHHhCCCccceEEeecC-----CCCCC----HHHHHHHHHHHhHcCccccccceeecc---chhHHHHHHHh
Q 030178 112 SLKRLDVDCIDLYYQHRI-----DTQTP----IEVTVISLSLLPSFVKLKCSILYCGVV---ALVAKQMLLLF 172 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~-----d~~~~----~~~~~~al~~l~~~G~ir~~~~~iGvs---~~~~~~~~~l~ 172 (182)
. ...|.+.+.++.--++ .-..+ ++.+.+.++.+++.|.--+ ++.. .++++.+.++.
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~----~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA----FGCEDASRTDPEELLELA 143 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE----EEETTTGGSSHHHHHHHH
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE----eCccccccccHHHHHHHH
Confidence 4 4567666665432221 00011 3345566666677776654 5553 34455444433
No 54
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=69.87 E-value=59 Score=26.51 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCCC----cHHHHHHHhhccCC-CCCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPH----TNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g----~~e~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
..+.+++.++++.+.+.|++.+.-+. |.. .-.+++. .+++.+ ...+.|+|-... +.+
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l---------------l~~ 109 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL---------------LAR 109 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh---------------HHH
Confidence 34678899999999999998887543 211 1222222 233321 234555544321 222
Q ss_pred HHHHHHHHhCCCccceEEeecCCC--------CCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDT--------QTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~--------~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.+ ..|...|++.+- +.+|..++ ...+++++++++.+++.|...-.+.++-+...+.+++.++.
T Consensus 110 ~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~ 180 (331)
T PRK00164 110 RA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLL 180 (331)
T ss_pred HH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHH
Confidence 22 234444555443 44444432 23477889999999988862211222333344545554444
No 55
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=69.61 E-value=24 Score=26.45 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=59.9
Q ss_pred HcCCCeeeccCCCC-------CCcHHHHHHHhhccCCCCCEEEEecc-CCCcCCCC--CCCCCCHHHHHHHHHHHHHHhC
Q 030178 48 NSGITFLDTSDIYG-------PHTNEILLGKAFKGGFRERAELATKF-GIGIVDGK--YGYHGDPAYVRAACEASLKRLD 117 (182)
Q Consensus 48 ~~G~~~~Dta~~Yg-------~g~~e~~lG~~l~~~~r~~~~i~tK~-~~~~~~~~--~~~~~~~~~i~~~~~~sL~~Lg 117 (182)
..++-++||-..-. -|..+..+-..|+. .|=++.|.+.= .+.-+++. .+....+..+.+-+++.|++.+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 34888999864332 12233344455554 34455554442 11112221 2233477889999999999998
Q ss_pred CCccceEEeecCCCCCCHHHHHHHHHHHhHcC
Q 030178 118 VDCIDLYYQHRIDTQTPIEVTVISLSLLPSFV 149 (182)
Q Consensus 118 ~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G 149 (182)
..|+- +..++....+..++++++++..++
T Consensus 157 ~~~v~---i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPFVV---IEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CcEEE---EcCCCHHHHHHHHHHHHHHHHhcc
Confidence 77654 456666666778999999998776
No 56
>PTZ00413 lipoate synthase; Provisional
Probab=69.51 E-value=71 Score=27.25 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=74.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCeeeccCCCC----CCcHHHHHHHhhccCCC--CCEEEEeccCCCcCCCCCCCCCCHHHH
Q 030178 32 PPKPEPDMIALIRHAINSGITFLDTSDIYG----PHTNEILLGKAFKGGFR--ERAELATKFGIGIVDGKYGYHGDPAYV 105 (182)
Q Consensus 32 ~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg----~g~~e~~lG~~l~~~~r--~~~~i~tK~~~~~~~~~~~~~~~~~~i 105 (182)
...+.++..+.-+.+.+.|++++=.++... ++.++. +.++++.+.. .++.|..-++-.. .+.+.+
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf~--------g~~e~l 245 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDFH--------GDLKSV 245 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCccc--------cCHHHH
Confidence 345788888998999999999775554443 233433 5556655322 3466666554221 234444
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC-----------CCCHHHHHHHHHHHhHc---CccccccceeeccchhHHHHHHH
Q 030178 106 RAACEASLKRLDVDCIDLYYQHRIDT-----------QTPIEVTVISLSLLPSF---VKLKCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~-----------~~~~~~~~~al~~l~~~---G~ir~~~~~iGvs~~~~~~~~~l 171 (182)
+.-.+ -|++ . +=|+.+. ...+++.++.|+..++. |..-+..+-+|+..-..+.++.+
T Consensus 246 ~~L~e-----AG~d---v-ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m 316 (398)
T PTZ00413 246 EKLAN-----SPLS---V-YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTL 316 (398)
T ss_pred HHHHh-----cCCC---E-EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHH
Confidence 43333 3332 1 2244311 23478899999988875 65554466688765555544333
Q ss_pred hc----CCCeeee
Q 030178 172 FT----NIDFFIY 180 (182)
Q Consensus 172 ~~----~~~~~~~ 180 (182)
.+ +++++.+
T Consensus 317 ~dLrelGVDivtI 329 (398)
T PTZ00413 317 RDLRTAGVSAVTL 329 (398)
T ss_pred HHHHHcCCcEEee
Confidence 32 5777766
No 57
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=69.05 E-value=45 Score=27.73 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEe
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQ 126 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~l 126 (182)
.+.+.+.+.++... +++.+++.++.+
T Consensus 164 qt~~~~~~~l~~~~-~l~~~~is~y~l 189 (360)
T TIGR00539 164 QTLNSLKEELKLAK-ELPINHLSAYAL 189 (360)
T ss_pred CCHHHHHHHHHHHH-ccCCCEEEeecc
Confidence 45566666665544 356666665544
No 58
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=68.95 E-value=30 Score=26.29 Aligned_cols=70 Identities=27% Similarity=0.337 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCc--HH--HHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHT--NE--ILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~--~e--~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 110 (182)
++++...+.+.|.++|..++=|+..|.++. .| +.+.+.++ .. +..|..- + . .+.+...+-++
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aG----G---i-kt~~~~l~~~~ 194 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAG----G---I-RTLEDALAMIE 194 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeC----C---C-CCHHHHHHHHH
Confidence 467899999999999999999998886332 12 44555543 22 2223211 0 1 24666777676
Q ss_pred HHHHHhCC
Q 030178 111 ASLKRLDV 118 (182)
Q Consensus 111 ~sL~~Lg~ 118 (182)
..-.++|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 66666665
No 59
>PLN02363 phosphoribosylanthranilate isomerase
Probab=68.45 E-value=12 Score=29.83 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcCCCeee
Q 030178 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTNIDFFI 179 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~~~~~~ 179 (182)
+.++++.+. ++|+|++-+.+...-.+..+.+ ..+.+........++. +||. |-+++.+.++.+...+..
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~----VgVfv~~~~~~I~~~~~~~~ld~ 125 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKP----VGVFVDDDANTILRAADSSDLEL 125 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccE----EEEEeCCCHHHHHHHHHhcCCCE
Confidence 455565544 5899999987443222223333 3444433333212333 8985 888999999988666555
Q ss_pred ecC
Q 030178 180 YQL 182 (182)
Q Consensus 180 ~q~ 182 (182)
+|+
T Consensus 126 VQL 128 (256)
T PLN02363 126 VQL 128 (256)
T ss_pred EEE
Confidence 564
No 60
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=68.44 E-value=13 Score=28.55 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcCCCeeeecC
Q 030178 113 LKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTNIDFFIYQL 182 (182)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~~~~~~~q~ 182 (182)
...+|+|++-+.+...-.+..+.+ ..+.+..... +.++. +||. |-+++.+.++.+.+.+..+|+
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~-~a~~i~~~~~-~~~~~----VgVf~~~~~~~i~~~~~~~~~d~vQL 81 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTIT-QIKKLASAVP-NHIDK----VCVVVNPDLTTIEHILSNTSINTIQL 81 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHH-HHHHHHHhCC-CCCCE----EEEEeCCCHHHHHHHHHhCCCCEEEE
Confidence 346999999987444322233333 3344444332 34554 9996 888999999988665555564
No 61
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=68.25 E-value=67 Score=27.17 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=31.2
Q ss_pred CcceeccccCCC----CCCCC-CChHHHHHHHHHHHHcCCCeeecc
Q 030178 17 SAQGLGCMGMSA----LYGPP-KPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 17 s~l~lGt~~~~~----~~~~~-~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
.+.+||.|.+|+ .||.+ .+.....+.++.+-+.|+..+...
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 477899998875 35554 344567789999999999999865
No 62
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=68.12 E-value=50 Score=24.94 Aligned_cols=42 Identities=12% Similarity=-0.012 Sum_probs=27.6
Q ss_pred ccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHH
Q 030178 120 CIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQML 169 (182)
Q Consensus 120 ~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~ 169 (182)
.+|.+++|..++ .+..+.+.+......++. +|+++.+..++.
T Consensus 73 ~~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~----i~~~~~~~~~~~ 114 (203)
T cd00405 73 GLDVVQLHGDES----PEYCAQLRARLGLPVIKA----IRVKDEEDLEKA 114 (203)
T ss_pred CCCEEEECCCCC----HHHHHHHHhhcCCcEEEE----EecCChhhHHHh
Confidence 478899997542 234455555445567887 999988765553
No 63
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=66.62 E-value=67 Score=25.88 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHHcCCCee
Q 030178 34 KPEPDMIALIRHAINSGITFL 54 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~ 54 (182)
.+.+...++++.+.+.|.+.|
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i 164 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRI 164 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEE
Confidence 356667777777777777666
No 64
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=65.86 E-value=67 Score=25.64 Aligned_cols=128 Identities=12% Similarity=0.075 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCCcHHHH--HHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEIL--LGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~--lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
+...+.++..-+.|..+|..++.-+.+..+.. +...|++ ...+-....+... +.++..+...+... .
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~--~~g~~~i~Hlt~r--------~~n~~~l~~~L~~~-~ 83 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKK--ETGIPTVPHLTCI--------GATREEIREILREY-R 83 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHH--hcCCCeeEEeeec--------CCCHHHHHHHHHHH-H
Confidence 44555666666778999998875443233332 3334432 1122222222221 14466666666644 6
Q ss_pred HhCCCccceEEeec-CC------CCCCHHHHHHHHHHHhHc-CccccccceeeccchhH---------HHHHHHhc----
Q 030178 115 RLDVDCIDLYYQHR-ID------TQTPIEVTVISLSLLPSF-VKLKCSILYCGVVALVA---------KQMLLLFT---- 173 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~-~d------~~~~~~~~~~al~~l~~~-G~ir~~~~~iGvs~~~~---------~~~~~l~~---- 173 (182)
.+|++. ++.+-- |. ...++.++.+-++.+++. |.+. ||+..+.. ++++.+.+
T Consensus 84 ~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~-----ig~a~~Peghp~~~~~~~~~~~L~~K~~a 156 (272)
T TIGR00676 84 ELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFD-----IGVAAYPEKHPEAPNLEEDIENLKRKVDA 156 (272)
T ss_pred HCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCee-----EEEEeCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666432 222221 11 112234455555555553 4454 88876432 34444444
Q ss_pred CCCeeeecC
Q 030178 174 NIDFFIYQL 182 (182)
Q Consensus 174 ~~~~~~~q~ 182 (182)
..+++.+|+
T Consensus 157 GA~f~iTQ~ 165 (272)
T TIGR00676 157 GADYAITQL 165 (272)
T ss_pred CCCeEeecc
Confidence 567888885
No 65
>PRK15108 biotin synthase; Provisional
Probab=63.87 E-value=85 Score=26.09 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCC-CC-CcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIY-GP-HTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Y-g~-g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 111 (182)
.+.+++.+..+.+.+.|++.|-..... .+ ...-+.+.+.++......+.++.-.+. .+.+.+++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~----------ls~e~l~~---- 141 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT----------LSESQAQR---- 141 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc----------CCHHHHHH----
Confidence 477888888888889999998543221 21 112244555555432223333222331 33444433
Q ss_pred HHHHhCCCccceEEeecC------CCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 112 SLKRLDVDCIDLYYQHRI------DTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~------d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
|+..|++++.+-+=-.| -....+++.++.++.+++.|+--+...-+|+.....+.++.++
T Consensus 142 -LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~ 207 (345)
T PRK15108 142 -LANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLL 207 (345)
T ss_pred -HHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHH
Confidence 44556553322110011 1123478899999999999986655666888666555554443
No 66
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=63.71 E-value=67 Score=24.83 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=63.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHH
Q 030178 31 GPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 110 (182)
....+.++..++.+.|.+.|+.-+-..+.|- +...+.|+ ..++-++|=++..... .+.+.-...++
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G~------~~~~~K~~E~~ 77 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLGA------STTDVKLYETK 77 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCCC------CcHHHHHHHHH
Confidence 3455889999999999999988887665443 34455553 3457777777654421 22222233344
Q ss_pred HHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHc
Q 030178 111 ASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSF 148 (182)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~ 148 (182)
+.+ ++|.+-+|+++-...-...+.....+.+.+.++.
T Consensus 78 ~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 78 EAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred HHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 444 4688999987765433334455666666666653
No 67
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=62.98 E-value=1.1e+02 Score=26.89 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCC-CEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (182)
+++-....++.|.++|+..|=..+.-.+-++-+..-++.++.... .+.|+-...+ .++.+.+.+.+++ +
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp---------~~t~~y~~~~a~~-l 172 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP---------VHTLNYYLSLVKE-L 172 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC---------cCcHHHHHHHHHH-H
Confidence 456678889999999998876665444323333333444432221 1223322221 2456666665555 4
Q ss_pred HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchh
Q 030178 114 KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALV 164 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~ 164 (182)
..+|++ .+.+-...-...+.++.+-+..+++...+. ||+=.|+
T Consensus 173 ~~~Gad---~I~IkDtaG~l~P~~v~~Lv~alk~~~~~p-----i~~H~Hn 215 (468)
T PRK12581 173 VEMGAD---SICIKDMAGILTPKAAKELVSGIKAMTNLP-----LIVHTHA 215 (468)
T ss_pred HHcCCC---EEEECCCCCCcCHHHHHHHHHHHHhccCCe-----EEEEeCC
Confidence 456753 444444333344556666666666654444 5554443
No 68
>PRK13796 GTPase YqeH; Provisional
Probab=62.25 E-value=93 Score=26.03 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=84.2
Q ss_pred cceeccccCCCCCC----CCCChHHHHHHHHHHHHcC---CCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCC
Q 030178 18 AQGLGCMGMSALYG----PPKPEPDMIALIRHAINSG---ITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIG 90 (182)
Q Consensus 18 ~l~lGt~~~~~~~~----~~~~~~~~~~~l~~a~~~G---~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~ 90 (182)
.+|--|.++-. |+ ...+.++..++++...+.- +-.+|..+.-+ .-...+.+... .+.-+++.+|....
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl 109 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLL 109 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhC
Confidence 45555554422 33 2346666777777776554 34567655333 22333444432 34568899998653
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHH
Q 030178 91 IVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLL 170 (182)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~ 170 (182)
. .....+.+.+-++...+.+|....+++.+.... ...+.+..+.+.++.+.+.+- .+|.+|..-..+-.
T Consensus 110 ~------~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~----vvG~~NvGKSTLiN 178 (365)
T PRK13796 110 P------KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVY----VVGVTNVGKSTLIN 178 (365)
T ss_pred C------CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEE----EEcCCCCcHHHHHH
Confidence 2 123456666666666677776555777776543 345788888888876655555 59999999777644
Q ss_pred Hh
Q 030178 171 LF 172 (182)
Q Consensus 171 l~ 172 (182)
.+
T Consensus 179 ~L 180 (365)
T PRK13796 179 RI 180 (365)
T ss_pred HH
Confidence 33
No 69
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=62.15 E-value=94 Score=26.01 Aligned_cols=122 Identities=11% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCC-cHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPH-TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g-~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 112 (182)
.+.++..+.++.+.+.|++.|--...-++. ..-..+.+.++.....-..+...+. ..+.+.+ +.
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~----------~lt~e~~-----~~ 167 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQ----------PLNEEEY-----KK 167 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCccccccc----------cCCHHHH-----HH
Confidence 368889999999999999987644322222 1123355555542111000111111 1445555 45
Q ss_pred HHHhCCCccceEEe----------ecCCCCCCHHHHHHHHHHHhHcCccc-cccceeeccchhHHHHHH
Q 030178 113 LKRLDVDCIDLYYQ----------HRIDTQTPIEVTVISLSLLPSFVKLK-CSILYCGVVALVAKQMLL 170 (182)
Q Consensus 113 L~~Lg~~~lDl~~l----------h~~d~~~~~~~~~~al~~l~~~G~ir-~~~~~iGvs~~~~~~~~~ 170 (182)
|+..|++.+-+.+= |...+...+++.+++++.+++.|.-. ++..-+|+..+..+.+..
T Consensus 168 Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~ 236 (366)
T TIGR02351 168 LVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFT 236 (366)
T ss_pred HHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHH
Confidence 66778776554332 21123345888999999999999742 456667887766666553
No 70
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=61.82 E-value=78 Score=25.01 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeeecc
Q 030178 31 GPPKPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
+..++.++..++++...+.|+..++.+
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCCEEEee
Confidence 344577889999999999999999987
No 71
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=61.68 E-value=21 Score=27.58 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcCCCeeeecC
Q 030178 114 KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTNIDFFIYQL 182 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~~~~~~~q~ 182 (182)
..+|.+|+-+++.-.-.+..+.+++-+..... .. ++. +||. |.+.+++.++.+...+..+|+
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v-~~--~~~----VgVf~n~~~~~i~~i~~~~~ld~VQl 81 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQAREIASAV-PK--VKV----VGVFVNESIEEILEIAEELGLDAVQL 81 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhC-CC--CCE----EEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 46888999887766322334333333333332 22 554 8887 788999999998887777774
No 72
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=61.66 E-value=66 Score=24.10 Aligned_cols=122 Identities=11% Similarity=-0.026 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCC----CcHHHHHHHhhccCCC-CCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGP----HTNEILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~----g~~e~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 111 (182)
+++..++-.++..|-..+-|...-.. ..+++++|++-++.|. ..+-+++-...-.. ...++.++.|. .+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTa---i~NDy~yd~vF---sR 101 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTA---IANDYGYDEVF---SR 101 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhh---hhccccHHHHH---HH
Confidence 45667788888999999977653321 2366778887766322 23444433211100 11235566664 44
Q ss_pred HHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
-.+.+|. .=|+++==.+... -..++++++..++.|..- ||++.-+-.++..++
T Consensus 102 qveA~g~-~GDvLigISTSGN--S~nVl~Ai~~Ak~~gm~v-----I~ltG~~GG~~~~~~ 154 (176)
T COG0279 102 QVEALGQ-PGDVLIGISTSGN--SKNVLKAIEAAKEKGMTV-----IALTGKDGGKLAGLL 154 (176)
T ss_pred HHHhcCC-CCCEEEEEeCCCC--CHHHHHHHHHHHHcCCEE-----EEEecCCCccccccc
Confidence 5566774 4566555444332 347899999999999997 999999888888877
No 73
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=61.51 E-value=78 Score=26.38 Aligned_cols=27 Identities=7% Similarity=0.034 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQH 127 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (182)
.+.+.+++.++.. .+++.+++.++.+.
T Consensus 167 qt~e~~~~tl~~~-~~l~p~~is~y~L~ 193 (353)
T PRK05904 167 LKLKDLDEVFNFI-LKHKINHISFYSLE 193 (353)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEEeeE
Confidence 4455555555533 34566666655554
No 74
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=61.36 E-value=96 Score=25.86 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHH--------------------HHHHhhccCCCCCEEEEeccCCCcC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEI--------------------LLGKAFKGGFRERAELATKFGIGIV 92 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~--------------------~lG~~l~~~~r~~~~i~tK~~~~~~ 92 (182)
..+.+...++.++|-+.|+-+|-|.-.+. ..+. ++-...+ ....+.++|=.
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~--svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm----- 156 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLT--AVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM----- 156 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHH--HHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc-----
Confidence 34667778889999999999887654443 2221 1111111 11234444433
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CCHHH-HHHHHHHHhHcCccccccceeeccchhHHHHH
Q 030178 93 DGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEV-TVISLSLLPSFVKLKCSILYCGVVALVAKQML 169 (182)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~-~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~ 169 (182)
.+-+.+.++++...++=. .|+.++|+.... .|+++ -+.+|..|.+.=-+. +|+|.|+..-+.
T Consensus 157 -------a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~-----vGlSDHT~g~~a 220 (347)
T COG2089 157 -------ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAI-----VGLSDHTLGILA 220 (347)
T ss_pred -------ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCc-----cccccCccchhH
Confidence 345678888776555433 399999986443 45554 356677776655554 999999876443
No 75
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=60.86 E-value=80 Score=26.15 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHHhCC--CccceEEeecCCCCCCHH-HHHHHHHHHhHcCccccccceeeccchhHHHHHHH
Q 030178 100 GDPAYVRAACEASLKRLDV--DCIDLYYQHRIDTQTPIE-VTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~--~~lDl~~lh~~d~~~~~~-~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l 171 (182)
.-+..+++..+..-++||. +..++-+-....+...+. .+-+.+++|.++|.=+-++.-+|++.-..+.+.++
T Consensus 204 pY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Ei 278 (320)
T COG0276 204 PYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEI 278 (320)
T ss_pred chHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHH
Confidence 3478899999999999994 333333333222221121 56778888888874332222366665555555443
No 76
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=60.08 E-value=81 Score=27.56 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 130 DTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 130 d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
......++..++++.+++.|..-..-+-+|+-+-+.+.+++.++
T Consensus 317 ~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 317 RKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 33455678888888888888754434457888888777766554
No 77
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=60.00 E-value=65 Score=27.28 Aligned_cols=123 Identities=11% Similarity=0.006 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCC--CcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGP--HTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~--g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
++..++++.|+++|+.-|=+...|.+ +..+..+-+.++...+-+..+....-... ......+.+.++-+.
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-------~~e~~av~~~~~~a~- 238 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG-------DSILEALDELLRLGR- 238 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc-------ccHHHHHHHHHHHHH-
Confidence 34566778889999987766555643 34666666666553333455555443211 012334444443332
Q ss_pred HhCCCccceEEeecCCCC----CCHHHHHHHHHHHhHcCccccccceeeccchh---HHHHHHHhcC
Q 030178 115 RLDVDCIDLYYQHRIDTQ----TPIEVTVISLSLLPSFVKLKCSILYCGVVALV---AKQMLLLFTN 174 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~----~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~---~~~~~~l~~~ 174 (182)
+.|. -+.+.|-.... ..+.++++.+++.+++|.-= +..++.+. ...++++++.
T Consensus 239 ~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v----~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 239 ETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQV----TADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred HhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcE----EEEeCCCCCCcHHHHHHHHcC
Confidence 3343 35556653222 23566778888888877321 14444332 4455555543
No 78
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=59.96 E-value=96 Score=25.43 Aligned_cols=129 Identities=8% Similarity=-0.003 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHcCCCeeecc--------CCCCCC----cHHHHHHHhhcc---CCCCCEEEEeccCCCcCCCCCCCC
Q 030178 35 PEPDMIALIRHAINSGITFLDTS--------DIYGPH----TNEILLGKAFKG---GFRERAELATKFGIGIVDGKYGYH 99 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta--------~~Yg~g----~~e~~lG~~l~~---~~r~~~~i~tK~~~~~~~~~~~~~ 99 (182)
++++..+..+.+.+.|+..||-- ..||.| ..-+.+.+.++. .-..++-|+.|+....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-------- 144 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-------- 144 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC--------
Confidence 56777788888899999999822 134433 122334444444 1122467888865321
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHH---HHHHHHHHhHcCccccccceeeccch-hHHHHHHHhc--
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEV---TVISLSLLPSFVKLKCSILYCGVVAL-VAKQMLLLFT-- 173 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~---~~~al~~l~~~G~ir~~~~~iGvs~~-~~~~~~~l~~-- 173 (182)
.+.+.. ..+-+.++..| +|.+.+|.......+.. -|+...++++.-.|.- ||.-+. ++++++++++
T Consensus 145 ~~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPV----i~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 145 DSGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPV----IANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred CCchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcE----EEeCCcCCHHHHHHHHhcc
Confidence 111222 34555566666 56777886543222110 2677778877755663 666654 6888888775
Q ss_pred CCCeee
Q 030178 174 NIDFFI 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+|.+.
T Consensus 217 g~DgVm 222 (312)
T PRK10550 217 GCDAVM 222 (312)
T ss_pred CCCEEE
Confidence 355543
No 79
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=59.66 E-value=65 Score=27.22 Aligned_cols=60 Identities=15% Similarity=-0.015 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CCC-------CCCHHH----H-HHHHHHHhHcCccccccceeeccchhH
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDT-------QTPIEV----T-VISLSLLPSFVKLKCSILYCGVVALVA 165 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~-------~~~~~~----~-~~al~~l~~~G~ir~~~~~iGvs~~~~ 165 (182)
.+.+.+++.++.. ..++.+++.++.+.- |+. ..+..+ . -.+.+.|.+.|..+ .++|||..
T Consensus 185 qt~~~~~~~l~~~-~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-----ye~~~fa~ 257 (394)
T PRK08898 185 QTLDEALADVETA-LAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAH-----YEVSAYAK 257 (394)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCch-----hccccccC
Confidence 5788888887766 458889999887763 211 011112 2 23456788999887 89999963
No 80
>PLN02389 biotin synthase
Probab=59.34 E-value=1.1e+02 Score=25.90 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCC-CCCCc---HHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDI-YGPHT---NEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~-Yg~g~---~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 109 (182)
.+.++..+.++.+.+.|++.|--... .+.+. .-+.+-+.++......+.|....+. .+.+.+++
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~----------l~~E~l~~-- 183 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM----------LEKEQAAQ-- 183 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC----------CCHHHHHH--
Confidence 47888999999999999998854311 11111 1134445555533334445443332 23333333
Q ss_pred HHHHHHhCCCccceEEeec-----C--CCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHH
Q 030178 110 EASLKRLDVDCIDLYYQHR-----I--DTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQ 167 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~-----~--d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~ 167 (182)
|+..|++++-.- +.. + -....+++.++.++.+++.|.--+...-+|+ +.+.++
T Consensus 184 ---LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~ed 243 (379)
T PLN02389 184 ---LKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEED 243 (379)
T ss_pred ---HHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHH
Confidence 344466543321 110 0 1123478889999999999965444555777 444433
No 81
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.82 E-value=1.1e+02 Score=25.53 Aligned_cols=70 Identities=9% Similarity=-0.194 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ-TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+++.+.-.+..+-+.+.++++.+-|=.+...... .++.+++++.++|.++|..- +=+|+-++...+++.+
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v-----~~yc~~d~~~a~~l~~ 216 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQV-----MVYCSDDPIAAKRLED 216 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEE-----EEEeCCCHHHHHHHHh
Confidence 4666666666777778889988887666644333 44789999999999999985 4578888877777764
No 82
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=58.56 E-value=45 Score=27.01 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=26.0
Q ss_pred HHHHHcCCCeeeccCCCCC---------------------Cc---HHHHHHHhhccCCCCCEEEEecc
Q 030178 44 RHAINSGITFLDTSDIYGP---------------------HT---NEILLGKAFKGGFRERAELATKF 87 (182)
Q Consensus 44 ~~a~~~G~~~~Dta~~Yg~---------------------g~---~e~~lG~~l~~~~r~~~~i~tK~ 87 (182)
..=+++|+|+||--..|.+ +. .-.-+-.+|.+.|.|=+++.-|.
T Consensus 37 ~~QL~~GiRyfDlRv~~~~~~~~~~~~~~~~~~~Hg~~~~~~l~~~L~~i~~FL~~~p~EvVil~~~~ 104 (281)
T cd08620 37 STQLALGARYFDFRPGYLWPQTRVLVLLNDLYHQHNMIPGQGFDTFLQDVVTFLKANPTEIVVVHITW 104 (281)
T ss_pred HHHHhcCcEEEEEEeeeccCccccccccCcEEEEeeccCCCcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 4445899999987443321 11 12234456666677777777764
No 83
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.41 E-value=86 Score=24.38 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCCcccCcceeccccCCCCCC------------------CCCChHHHHHHHHHHHHcCCCeee-ccCCCCCCcHHHHHHH
Q 030178 11 SQGLEVSAQGLGCMGMSALYG------------------PPKPEPDMIALIRHAINSGITFLD-TSDIYGPHTNEILLGK 71 (182)
Q Consensus 11 ~~g~~vs~l~lGt~~~~~~~~------------------~~~~~~~~~~~l~~a~~~G~~~~D-ta~~Yg~g~~e~~lG~ 71 (182)
+.|+.+|.+-||-+..=.+|| .+.+.+++..+=..+-++|+.++= +|+... .|+. +
T Consensus 91 ~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTt---deRm--e 165 (268)
T KOG4175|consen 91 PQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTT---DERM--E 165 (268)
T ss_pred ccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHH--H
Confidence 357888888888553211122 255788898888999999998885 344333 3331 2
Q ss_pred hhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 030178 72 AFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD 117 (182)
Q Consensus 72 ~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 117 (182)
.|......=+|+.+..+.. .+++.+.+.+.+.+++..
T Consensus 166 ll~~~adsFiYvVSrmG~T---------G~~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 166 LLVEAADSFIYVVSRMGVT---------GTRESVNEKLQSLLQRVR 202 (268)
T ss_pred HHHHhhcceEEEEEecccc---------ccHHHHHHHHHHHHHHHH
Confidence 2333234558899999875 456667777777777664
No 84
>PRK06256 biotin synthase; Validated
Probab=58.27 E-value=1e+02 Score=25.20 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHcCCCee-eccCCCCCCcHH-HHHHHhhccCCC-CCEEEEeccCCCcCCCCCCCCCCHHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFL-DTSDIYGPHTNE-ILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~-Dta~~Yg~g~~e-~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 110 (182)
.+.++..+.++.+.+.|++.| -.+..+++...+ +.+-+.++...+ -.+-+.+-.+. .+.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~----------l~~e~l----- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL----------LTEEQA----- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc----------CCHHHH-----
Confidence 367888899999999998644 333344432221 234444444221 22323222221 233333
Q ss_pred HHHHHhCCCccceEE------eecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 111 ASLKRLDVDCIDLYY------QHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 111 ~sL~~Lg~~~lDl~~------lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
+.|++.|++.+.+-+ +....+...+++.+++++.+++.|.--+...-+|+ +.+.+++.+.+
T Consensus 156 ~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 156 ERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred HHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 336666765443210 01112223467889999999999975444445676 55555554444
No 85
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=57.70 E-value=41 Score=30.18 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCcHHHHHHHhhcc-CCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccceEEeecCCCCCC
Q 030178 62 PHTNEILLGKAFKG-GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL-DVDCIDLYYQHRIDTQTP 134 (182)
Q Consensus 62 ~g~~e~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~~~lDl~~lh~~d~~~~ 134 (182)
.|.+-+.++++|.+ .+|+++.|+.--. .+ .+-+..||++| |+.|+.-+.+-|-.+..|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTY------------ER---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P 690 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTY------------ER---EAVLMGSLERLHGLPYLNKVVVVWNSPKDP 690 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEe------------hH---HHHHHHHHHHhhCCcccceEEEEeCCCCCC
Confidence 45677889999988 7888877654332 12 34477899888 789999999888655444
No 86
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=57.33 E-value=25 Score=27.06 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcCCCeeeecC
Q 030178 114 KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTNIDFFIYQL 182 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~~~~~~~q~ 182 (182)
.++|+|++-+.+...-.+..+. +..+.+..... +.++. +||. |-+++.+.++.+...+..+|+
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~-~~a~~i~~~~~-~~i~~----VgVf~~~~~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSP-EQAAELAAALP-PFVKV----VGVFVNASDEEIDEIVETVPLDLLQL 83 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCH-HHHHHHHHhCC-CCCCE----EEEEeCCCHHHHHHHHHhcCCCEEEE
Confidence 4689999998643322222323 34444443332 34554 9987 778999999887665555553
No 87
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=57.11 E-value=1.1e+02 Score=25.58 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 32 PPKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 32 ~~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
...+.++..++++...+.|+..++...
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 345778899999999999999999764
No 88
>PRK05588 histidinol-phosphatase; Provisional
Probab=56.25 E-value=68 Score=25.16 Aligned_cols=101 Identities=8% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCC---------cHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGPH---------TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~g---------~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
....+.++.|++.|++.+ .++..... .-+..+ +.++..+..++.+..-++... + -..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~~-----------~-~~~ 81 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGMEK-----------D-LIE 81 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEecccC-----------C-CHH
Confidence 457899999999999988 66553210 111222 111222224555555554321 1 244
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCC----------CHH----HHHHHHHHHhH-cCccc
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDTQT----------PIE----VTVISLSLLPS-FVKLK 152 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~~----------~~~----~~~~al~~l~~-~G~ir 152 (182)
..++.|+....|++ +..+|+.+... +.+ ..++.+.++.+ .|++.
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~d 140 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFID 140 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 55667777777777 78999864221 222 34577777776 46554
No 89
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=54.46 E-value=1.1e+02 Score=24.44 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 31 GPPKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
+...+.++..++.....+.|+..|+...
T Consensus 15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 15 ATRMRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred ceeccHHHHHHHHHHHHHcCCCEEEccC
Confidence 3345778888999999999999999874
No 90
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.45 E-value=1.1e+02 Score=24.62 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=12.0
Q ss_pred CChHHHHHHHHHHHHcCCCee
Q 030178 34 KPEPDMIALIRHAINSGITFL 54 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~ 54 (182)
.+.+...++++.+.+.|.+.|
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i 172 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEI 172 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEE
Confidence 345555566666666665555
No 91
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=53.02 E-value=1.2e+02 Score=25.33 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHHcC-CCeeeccCCCCCCcHHHHHHHhhccCC-CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSG-ITFLDTSDIYGPHTNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G-~~~~Dta~~Yg~g~~e~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 111 (182)
.+.++..+.-+.|-+.| .++...|..++.+..-..+-++++.+. .-.+-+..-+|- .+.+..++
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~----------l~~eq~~~---- 149 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM----------LTEEQAEK---- 149 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC----------CCHHHHHH----
Confidence 36777888888888999 788888887762233333445554422 222333333331 33444433
Q ss_pred HHHHhCCCccceEEeecCCC----------CCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 112 SLKRLDVDCIDLYYQHRIDT----------QTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~----------~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
|...|+++ +-|+.+. ...++|-++.++.+++.|+--++..-+|+-+-..+.+..++
T Consensus 150 -L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~ 215 (335)
T COG0502 150 -LADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLL 215 (335)
T ss_pred -HHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHH
Confidence 45556653 3365433 23478999999999999999888888999888877665544
No 92
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.26 E-value=1.1e+02 Score=23.76 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIY 60 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Y 60 (182)
..+.++..++++...+.|+..++....-
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~ 42 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGA 42 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 3467889999999999999999977543
No 93
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=51.57 E-value=1e+02 Score=23.20 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc----CCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG----GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 112 (182)
.+..+.|..- +.-+=.+|+..+..+..-++.+-.+++. .|.-.+++.+.+......-...........++.+++.
T Consensus 49 ~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 127 (178)
T PF14606_consen 49 PEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREA 127 (178)
T ss_dssp HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHH
Confidence 3344555544 6677788888776544433444444433 5666788888766543322222335567778888888
Q ss_pred HHHh-CCCccceEEeecCC
Q 030178 113 LKRL-DVDCIDLYYQHRID 130 (182)
Q Consensus 113 L~~L-g~~~lDl~~lh~~d 130 (182)
.+.| .-..-+++++...+
T Consensus 128 v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 128 VEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp HHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHcCCCcEEEeCchh
Confidence 8887 22356778887653
No 94
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=51.57 E-value=19 Score=18.80 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHcCCC
Q 030178 37 PDMIALIRHAINSGIT 52 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~ 52 (182)
++..+++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5688999999999986
No 95
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=51.42 E-value=1.2e+02 Score=23.89 Aligned_cols=112 Identities=10% Similarity=-0.047 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCCCc---HHHHHHHhhccCC-C-CCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPHT---NEILLGKAFKGGF-R-ERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~---~e~~lG~~l~~~~-r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
+-+.++..++++.|.++|++.+=.++.|-.|. ..+.+.+.+.+.. . +.--+--|+-+-. ....+.+.+..
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQ-----EIrIt~~vl~~ 90 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQ-----EIRITGDVLDD 90 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCc-----eEEEchHHHHH
Confidence 34778899999999999999876666555432 3344444443300 0 0000111111100 01123333333
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
--+..+.-++- -+-+++.+|... ..+.+-+.+-+|.-+|.+-
T Consensus 91 l~~g~I~tind--skYlLIEF~~~~-v~~ya~~lf~elq~kGi~P 132 (254)
T COG4464 91 LDKGIILTIND--SKYLLIEFPMNH-VPRYADQLFFELQSKGIIP 132 (254)
T ss_pred HhcCccccccc--cceEEEEccCCc-chhhHHHHHHHHHHCCcee
Confidence 33333344442 266777777543 3455666666666666664
No 96
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=51.26 E-value=53 Score=23.41 Aligned_cols=54 Identities=20% Similarity=0.087 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVA 162 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~ 162 (182)
.+.+.+...+++..+. .-+.-.+=..|...++....+.|+.+++.|.-+ +|+..
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~-----v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLK-----IGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCe-----EEEEe
Confidence 4555565555554432 233334445677889999999999999999776 88765
No 97
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.20 E-value=1.1e+02 Score=24.30 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHcCCCeee--ccCCCCCCc-HHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLD--TSDIYGPHT-NEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~D--ta~~Yg~g~-~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 111 (182)
+.++..+.++.+.+.|++.|- ++..+.... .++.+....+...+-.+.+....+. .+.+.+ +
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~----------~~~e~l-----~ 127 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGL----------LDPEQA-----K 127 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCC----------CCHHHH-----H
Confidence 456666777777788997642 222222111 1334433332212223333222221 333333 3
Q ss_pred HHHHhCCCccceEEeec------CCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 112 SLKRLDVDCIDLYYQHR------IDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~------~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.|+..|++.+-+-+=.. ......+++.+++++.+++.|.--....-+|+ +.+.+++.+..+
T Consensus 128 ~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~ 194 (296)
T TIGR00433 128 RLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLAL 194 (296)
T ss_pred HHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHH
Confidence 45666766533221111 11233577889999999999964322233677 666666655443
No 98
>PRK11024 colicin uptake protein TolR; Provisional
Probab=51.15 E-value=49 Score=23.61 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+.+.+...+++.+.. .-+...+=..|...++....+.|+.+++.|.-+ +++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~-----v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKS-----VGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCe-----EEEE
Confidence 3455565555554432 234445556788889999999999999999776 7764
No 99
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.06 E-value=1.7e+02 Score=26.89 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=64.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCeeeccC--CCCCCcHHHHHHHhhccCCCCCEEEEe--ccCCCcCCCCCC-----CCCC-
Q 030178 32 PPKPEPDMIALIRHAINSGITFLDTSD--IYGPHTNEILLGKAFKGGFRERAELAT--KFGIGIVDGKYG-----YHGD- 101 (182)
Q Consensus 32 ~~~~~~~~~~~l~~a~~~G~~~~Dta~--~Yg~g~~e~~lG~~l~~~~r~~~~i~t--K~~~~~~~~~~~-----~~~~- 101 (182)
.+.|.++.++.++...+.|+.-|-.+. .|-+...|..+++.+++.- .++.|++ ++++....-+.. ...-
T Consensus 134 ~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~ 212 (674)
T COG0145 134 KPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLS 212 (674)
T ss_pred CcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeeh
Confidence 356899999999999999999887665 3446689999999999944 5555555 777633211110 0111
Q ss_pred --HHHHHHHHHHHHHHhCCCccceEEeecCCCCCC
Q 030178 102 --PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP 134 (182)
Q Consensus 102 --~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~ 134 (182)
.+...++++..|+.-|.. ..++++.+.....+
T Consensus 213 pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 213 PILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred HHHHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 233444556666666653 67777777544333
No 100
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=50.92 E-value=1.4e+02 Score=24.57 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCC------cHH----H------HHHHhhcc-CC-CCCEEEEeccCCCcCCCCC
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPH------TNE----I------LLGKAFKG-GF-RERAELATKFGIGIVDGKY 96 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g------~~e----~------~lG~~l~~-~~-r~~~~i~tK~~~~~~~~~~ 96 (182)
.++...++=+..+++|-+.+.|-..-++- .-| . .|++.... .. +.+.||.--+++.......
T Consensus 51 ~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~ 130 (311)
T COG0646 51 KPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSI 130 (311)
T ss_pred CcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCc
Confidence 45667788888889999999988643321 011 1 11221111 11 1467888888877643222
Q ss_pred CC--CCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 030178 97 GY--HGDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 97 ~~--~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (182)
.. ..+.+.++++..+..+.|=-.=+|++++.-.
T Consensus 131 ~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~ 165 (311)
T COG0646 131 SPDFAVTFDELVEAYREQVEGLIDGGADLILIETI 165 (311)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehh
Confidence 22 5788999999999999886678999999864
No 101
>PRK05414 urocanate hydratase; Provisional
Probab=50.16 E-value=46 Score=29.39 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCCee--eccCCCC--------CCcHHHHHHHhhccC---CCCCEEEEeccCCCcCCCCC----------C
Q 030178 41 ALIRHAINSGITFL--DTSDIYG--------PHTNEILLGKAFKGG---FRERAELATKFGIGIVDGKY----------G 97 (182)
Q Consensus 41 ~~l~~a~~~G~~~~--Dta~~Yg--------~g~~e~~lG~~l~~~---~r~~~~i~tK~~~~~~~~~~----------~ 97 (182)
+-+...-+.|++.+ -||..|. .|.-|.++..+-+.. -+..+++++=++-=....+. .
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 34566667788776 3555443 356666554443331 24567777766532110000 0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc---C
Q 030178 98 YHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT---N 174 (182)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~---~ 174 (182)
...+++.|+ +|+.+.|+|.+ ..+++++++..++.+++|...+ ||+-.--.+-++++.+ .
T Consensus 196 vEvd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~S----Ig~~GNaadv~~~l~~~~i~ 257 (556)
T PRK05414 196 VEVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLS----IGLLGNAADVLPELVRRGIR 257 (556)
T ss_pred EEECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceE----EEEeccHHHHHHHHHHcCCC
Confidence 112333333 57888898853 2458899999999999999998 9999888999998887 3
Q ss_pred CCeeeec
Q 030178 175 IDFFIYQ 181 (182)
Q Consensus 175 ~~~~~~q 181 (182)
.|+++=|
T Consensus 258 pDlvtDQ 264 (556)
T PRK05414 258 PDLVTDQ 264 (556)
T ss_pred CCccCcC
Confidence 5666655
No 102
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=49.13 E-value=47 Score=29.23 Aligned_cols=123 Identities=15% Similarity=0.047 Sum_probs=77.1
Q ss_pred HHHHHHHHcCCCee--eccCCCC--------CCcHHHHHHHhhccC---CCCCEEEEeccCCCcCCCCC----------C
Q 030178 41 ALIRHAINSGITFL--DTSDIYG--------PHTNEILLGKAFKGG---FRERAELATKFGIGIVDGKY----------G 97 (182)
Q Consensus 41 ~~l~~a~~~G~~~~--Dta~~Yg--------~g~~e~~lG~~l~~~---~r~~~~i~tK~~~~~~~~~~----------~ 97 (182)
+-+....+.|++.+ -||..|. .|.-|.++..+-+.. -+..+++++=++--....+. .
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 34566677788776 3554442 356666554333331 24556666665421100000 0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc---C
Q 030178 98 YHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT---N 174 (182)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~---~ 174 (182)
...+++.|+ +|+.+.|+|.+ ..+++++++..++.+++|...+ ||+-.--.+-++++.+ .
T Consensus 187 vEvd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~S----Ig~~GNaadv~~~l~~r~i~ 248 (545)
T TIGR01228 187 VEVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPIS----IGLLGNAAEVLPELLKRGVV 248 (545)
T ss_pred EEECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceE----EEeeccHHHHHHHHHHcCCC
Confidence 112333333 57788898853 2458899999999999999998 9999988999999887 3
Q ss_pred CCeeeec
Q 030178 175 IDFFIYQ 181 (182)
Q Consensus 175 ~~~~~~q 181 (182)
.|+++=|
T Consensus 249 pDlvtDQ 255 (545)
T TIGR01228 249 PDVVTDQ 255 (545)
T ss_pred CCCcCCC
Confidence 5776655
No 103
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=49.01 E-value=1.6e+02 Score=24.78 Aligned_cols=30 Identities=10% Similarity=-0.071 Sum_probs=27.5
Q ss_pred HHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 140 ISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 140 ~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+.++.|.++|.+-+ +|=||-+.+++.+..+
T Consensus 179 ~~i~~l~~~gi~vs----~GHs~A~~~~~~~a~~ 208 (382)
T PRK11170 179 EVIRKLVEAGIVVS----AGHSNATYEEAKAGFR 208 (382)
T ss_pred HHHHHHHHCCcEEE----eeCCcCCHHHHHHHHH
Confidence 88999999999997 9999999999988765
No 104
>PRK12677 xylose isomerase; Provisional
Probab=48.80 E-value=1.2e+02 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=29.5
Q ss_pred cceeccccCCC----CCCCC-CChHHHHHHHHHHHHcCCCeeecc
Q 030178 18 AQGLGCMGMSA----LYGPP-KPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 18 ~l~lGt~~~~~----~~~~~-~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
+.+||.|.+|+ +||.+ .+.-...+.++.+-+.|+..+..-
T Consensus 7 ~f~~~~w~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh 51 (384)
T PRK12677 7 KFSFGLWTVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFH 51 (384)
T ss_pred eeEEEEeeccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEec
Confidence 67899998874 35554 233457899999999999887654
No 105
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=48.70 E-value=1.4e+02 Score=23.84 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHc--Cccccccceeeccchh
Q 030178 135 IEVTVISLSLLPSF--VKLKCSILYCGVVALV 164 (182)
Q Consensus 135 ~~~~~~al~~l~~~--G~ir~~~~~iGvs~~~ 164 (182)
..+++++++.+++. |.=- .+|+||.+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~----l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHT----TCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCE----EEEeCCCc
Confidence 45678888888887 6433 39999876
No 106
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=48.13 E-value=1.5e+02 Score=24.01 Aligned_cols=122 Identities=13% Similarity=0.055 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCCee--eccCCCCCCcHHHHHHHh--hcc-CCCCCEEEEeccCCCcCCCCC-----CCCCCHHHHHHH
Q 030178 39 MIALIRHAINSGITFL--DTSDIYGPHTNEILLGKA--FKG-GFRERAELATKFGIGIVDGKY-----GYHGDPAYVRAA 108 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~~--Dta~~Yg~g~~e~~lG~~--l~~-~~r~~~~i~tK~~~~~~~~~~-----~~~~~~~~i~~~ 108 (182)
..+.++.|++.|++.+ |-+. .. .++.+..+ +.+ .....+.+-..++........ ....+++..++.
T Consensus 86 ~~e~i~~Al~~G~tsVm~d~s~-~~---~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f 161 (281)
T PRK06806 86 TFEKIKEALEIGFTSVMFDGSH-LP---LEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRF 161 (281)
T ss_pred CHHHHHHHHHcCCCEEEEcCCC-CC---HHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHH
Confidence 4568889999999976 4333 22 33333222 222 112233344443332211100 012344444443
Q ss_pred HHHHHHHhCCCccce--EEeecCCCCCCH--HHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 109 CEASLKRLDVDCIDL--YYQHRIDTQTPI--EVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl--~~lh~~d~~~~~--~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+ ++.|+||+-+ --+|...+..+. -+.++.+.+..+-.++- +|-|.-+.+++.++.+
T Consensus 162 ~----~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~-----hG~SGI~~e~~~~~i~ 221 (281)
T PRK06806 162 A----EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVL-----HGGSGISPEDFKKCIQ 221 (281)
T ss_pred H----HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEE-----ECCCCCCHHHHHHHHH
Confidence 3 3578888888 667764332221 24555555555667775 9999999999988875
No 107
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=47.86 E-value=95 Score=26.06 Aligned_cols=123 Identities=8% Similarity=-0.060 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCC-cHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPH-TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g-~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 112 (182)
.+.++..+.++.+.+.|++.|--...-.+- ..-..+-+.++...+.---+..+.++ .+.+.+ +.
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~----------lt~e~l-----~~ 168 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQP----------LSEEEY-----AE 168 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCC----------CCHHHH-----HH
Confidence 477889999999999999988543211111 12233444444422110012223322 344444 46
Q ss_pred HHHhCCCccceEEeec-C---------CCCCCHHHHHHHHHHHhHcCcc-ccccceeeccchhHHHHHHH
Q 030178 113 LKRLDVDCIDLYYQHR-I---------DTQTPIEVTVISLSLLPSFVKL-KCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 113 L~~Lg~~~lDl~~lh~-~---------d~~~~~~~~~~al~~l~~~G~i-r~~~~~iGvs~~~~~~~~~l 171 (182)
|+..|++.+.+.+=-. + .+...+++.+++++.+++.|.- -+...-+|+..+..+.+..+
T Consensus 169 Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a 238 (371)
T PRK09240 169 LVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTA 238 (371)
T ss_pred HHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHH
Confidence 7777877555433221 1 2233588999999999999963 22345577777664454443
No 108
>PRK08609 hypothetical protein; Provisional
Probab=47.30 E-value=1.7e+02 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCCeeeccCCC
Q 030178 38 DMIALIRHAINSGITFLDTSDIY 60 (182)
Q Consensus 38 ~~~~~l~~a~~~G~~~~Dta~~Y 60 (182)
...++++.|.+.|++.+=.++.+
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~ 372 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHS 372 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCC
Confidence 36779999999999999877765
No 109
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=47.13 E-value=1.7e+02 Score=24.33 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeeecc
Q 030178 31 GPPKPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
+..++.++..++++...++|+..|+.+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEee
Confidence 334577999999999999999999984
No 110
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=47.08 E-value=1e+02 Score=21.86 Aligned_cols=100 Identities=16% Similarity=0.023 Sum_probs=51.9
Q ss_pred HHHhhccC--CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCCCCCHH-HHHHHHH
Q 030178 69 LGKAFKGG--FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD--VDCIDLYYQHRIDTQTPIE-VTVISLS 143 (182)
Q Consensus 69 lG~~l~~~--~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~~~~~-~~~~al~ 143 (182)
+.++++.. +...+.++...-+..... ..+.-...+.+..+...++|+ ...+.+.+.....+...+. .+-++|+
T Consensus 7 I~~~~~~~~~~~~~llfsaHgiP~~~~~--~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~ 84 (135)
T cd00419 7 IREALAELPREKDRLLFSAHGLPVRDIK--KGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALE 84 (135)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCHHHHhh--CCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHH
Confidence 34444442 234455665554322110 112346778888888889998 3334444443222211111 4678888
Q ss_pred HHhHcCccccccceeeccchhHHHHHH
Q 030178 144 LLPSFVKLKCSILYCGVVALVAKQMLL 170 (182)
Q Consensus 144 ~l~~~G~ir~~~~~iGvs~~~~~~~~~ 170 (182)
+|.++|.=+-.+..+|+..-+.+.+.+
T Consensus 85 ~l~~~G~~~i~v~p~gF~~D~~Etl~d 111 (135)
T cd00419 85 ELAKEGVKNVVVVPIGFVSDHLETLYE 111 (135)
T ss_pred HHHHcCCCeEEEECCccccccHHHHHH
Confidence 999988533223346665555554443
No 111
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=46.41 E-value=59 Score=26.30 Aligned_cols=68 Identities=9% Similarity=-0.064 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.+.+... .+-+.|.++|+++|++-.+..|.....+.+.++.+..+.+...++ +..++ -+...++++++
T Consensus 23 ~s~e~k~-~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~----~~~l~-~~~~~ie~A~~ 90 (287)
T PRK05692 23 IPTADKI-ALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVT----YAALT-PNLKGLEAALA 90 (287)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCe----EEEEe-cCHHHHHHHHH
Confidence 4444444 456668888999999876665532222334566666665443344 13333 46777777665
No 112
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=46.09 E-value=1e+02 Score=21.78 Aligned_cols=66 Identities=9% Similarity=-0.062 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCeeeccCCCCC-C-----------------cHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCC
Q 030178 40 IALIRHAINSGITFLDTSDIYGP-H-----------------TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGD 101 (182)
Q Consensus 40 ~~~l~~a~~~G~~~~Dta~~Yg~-g-----------------~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~ 101 (182)
...+..+++.|+|+||.--.++. | ..-..+.+++...+.+-+++.-|-.... ..
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~~~~--------~~ 102 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLENHCSP--------DQ 102 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehhhCCH--------HH
Confidence 35778899999999985433321 1 1223455666666777788888765421 22
Q ss_pred HHHHHHHHHHHH
Q 030178 102 PAYVRAACEASL 113 (182)
Q Consensus 102 ~~~i~~~~~~sL 113 (182)
.+.+.+.+++.+
T Consensus 103 ~~~l~~~l~~~~ 114 (135)
T smart00148 103 QAKMAQMFKEIF 114 (135)
T ss_pred HHHHHHHHHHHH
Confidence 344555555555
No 113
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=45.83 E-value=1.5e+02 Score=23.51 Aligned_cols=116 Identities=13% Similarity=-0.056 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCC-CCCCCCHHHHHHHHHHH---HHHh
Q 030178 41 ALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGK-YGYHGDPAYVRAACEAS---LKRL 116 (182)
Q Consensus 41 ~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~-~~~~~~~~~i~~~~~~s---L~~L 116 (182)
++++.|++.|...|.....-. +. ++ +-..++++ .-.+++...-+....... ....-..+.+.+.+++. +++.
T Consensus 87 ~v~e~al~~G~~iINdisg~~-~~-~~-~~~l~~~~-~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 162 (257)
T cd00739 87 EVARAALEAGADIINDVSGGS-DD-PA-MLEVAAEY-GAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESA 162 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCC-CC-hH-HHHHHHHc-CCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 556677777877776443222 11 23 33444442 234444333221110000 00001123344444443 4455
Q ss_pred CCC----ccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhH
Q 030178 117 DVD----CIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVA 165 (182)
Q Consensus 117 g~~----~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~ 165 (182)
|++ ++|-..- +........++++.++++++.|.=- .+|+||-+.
T Consensus 163 Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pi----l~G~SrkSf 210 (257)
T cd00739 163 GVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPV----LVGASRKSF 210 (257)
T ss_pred CCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcE----EEEecccHH
Confidence 765 4444221 1111111235677788888776433 399998764
No 114
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=45.54 E-value=1.2e+02 Score=24.22 Aligned_cols=47 Identities=17% Similarity=-0.040 Sum_probs=35.4
Q ss_pred ccceEEeecCCCCCCH---HHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 120 CIDLYYQHRIDTQTPI---EVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 120 ~lDl~~lh~~d~~~~~---~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
..|++++.-|....|. .+.++-|.+|+++|+. |=+.+|+...+.+..
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t------Il~vtHDL~~v~~~~ 206 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT------VLMVTHDLGLVMAYF 206 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE------EEEEeCCcHHhHhhC
Confidence 5788888877666664 3688999999999877 556778777776654
No 115
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=45.49 E-value=83 Score=21.69 Aligned_cols=53 Identities=21% Similarity=0.082 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+.+.+...+++..++ .-+.-.+=.+|...++....+.|+.+++.|.-+ +++.
T Consensus 67 v~~~~L~~~l~~~~~~----~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~-----v~l~ 119 (122)
T TIGR02803 67 VARETLGTALDALTEG----DKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLK-----IGLV 119 (122)
T ss_pred CCHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCE-----EEEE
Confidence 4555666655554432 223334445678889999999999999999887 7664
No 116
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=44.86 E-value=1.8e+02 Score=24.09 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCeeecc
Q 030178 32 PPKPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 32 ~~~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
..++.++..++++...++|+..|+.+
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34577899999999999999999984
No 117
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=44.72 E-value=2.1e+02 Score=25.12 Aligned_cols=26 Identities=4% Similarity=0.078 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
..+.++..++.+...+.|++.|+.+.
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 45678899999999999999999764
No 118
>PLN02428 lipoic acid synthase
Probab=44.32 E-value=1.9e+02 Score=24.25 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccC----CCCCCcHHHHHHHhhccCCC--CCEEEEeccCCCcCCCCCCCCCCHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSD----IYGPHTNEILLGKAFKGGFR--ERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~----~Yg~g~~e~~lG~~l~~~~r--~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (182)
+.++..++.+.+.+.|++++=... .|.++..+. +.+.++...+ ..+.|..-. +.. ..+.+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~-~~elir~Ir~~~P~i~Ie~L~-pdf-------~~d~e----- 196 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGH-FAETVRRLKQLKPEILVEALV-PDF-------RGDLG----- 196 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHH-HHHHHHHHHHhCCCcEEEEeC-ccc-------cCCHH-----
Confidence 556677888888889998764332 233333433 4444444211 133333311 111 01211
Q ss_pred HHHHHHHhCCCccceEEeecCCC-----------CCCHHHHHHHHHHHhHc--CccccccceeeccchhHHHHHHHhc--
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDT-----------QTPIEVTVISLSLLPSF--VKLKCSILYCGVVALVAKQMLLLFT-- 173 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~-----------~~~~~~~~~al~~l~~~--G~ir~~~~~iGvs~~~~~~~~~l~~-- 173 (182)
+-+.|..-| +|. +-|+++. ....++.++.++.+++. |..-...+-+|+ .-+.+++.++++
T Consensus 197 lL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 197 AVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 222223334 444 3366543 23467889999999988 877555666888 556666655544
Q ss_pred ---CCCeeee
Q 030178 174 ---NIDFFIY 180 (182)
Q Consensus 174 ---~~~~~~~ 180 (182)
.++++.+
T Consensus 272 relgvd~vti 281 (349)
T PLN02428 272 RAAGVDVVTF 281 (349)
T ss_pred HHcCCCEEee
Confidence 3555544
No 119
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=44.06 E-value=1.7e+02 Score=23.65 Aligned_cols=39 Identities=5% Similarity=0.181 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHH-HHHHHh
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPHTNE-ILLGKA 72 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e-~~lG~~ 72 (182)
..+.++..++++...+.|++.++.+ .-.-+..| +.+.+.
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~g-fP~~~~~e~e~~~~i 58 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVG-FPSASQTDFDFVREL 58 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-CCCCCHHHHHHHHHH
Confidence 3466888999999999999999987 32223556 444444
No 120
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=43.19 E-value=1.7e+02 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=16.8
Q ss_pred CCChHHHHHHHHHHHHcCCCeeecc
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
..+.+++.++++.+.+.|+..|..+
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~ 69 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFS 69 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 3456667777777777777766543
No 121
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=43.17 E-value=1.2e+02 Score=22.42 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCC-CEEEEec-cCCCcCCCCCCCCCCHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRE-RAELATK-FGIGIVDGKYGYHGDPAYVRAACEAS 112 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~-~~~i~tK-~~~~~~~~~~~~~~~~~~i~~~~~~s 112 (182)
+++..+-.+++|-+.|+.+|=.|+.|| ..-..+-+.+ +.+ ++++.|. .+... .+...+.+.+++.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG--~tA~k~lemv---eg~lkvVvVthh~Gf~e--------~g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTG--YTALKALEMV---EGDLKVVVVTHHAGFEE--------KGTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEeccc--HHHHHHHHhc---ccCceEEEEEeeccccc--------CCceecCHHHHHH
Confidence 556677778888899999999999888 3333233333 332 3444443 33322 2223455566666
Q ss_pred HHHhCC
Q 030178 113 LKRLDV 118 (182)
Q Consensus 113 L~~Lg~ 118 (182)
|+..|.
T Consensus 79 L~erGa 84 (186)
T COG1751 79 LKERGA 84 (186)
T ss_pred HHHcCc
Confidence 777764
No 122
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=43.12 E-value=22 Score=32.37 Aligned_cols=40 Identities=20% Similarity=0.113 Sum_probs=30.2
Q ss_pred HHHHhCCCccceEEeecC-CCCCCHHHHHHHHHHHhHcCcc
Q 030178 112 SLKRLDVDCIDLYYQHRI-DTQTPIEVTVISLSLLPSFVKL 151 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~-d~~~~~~~~~~al~~l~~~G~i 151 (182)
-.++|--+---|+++|-. |....+.-+-.-+..|+++||=
T Consensus 794 ~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagKp 834 (867)
T KOG2281|consen 794 HVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKP 834 (867)
T ss_pred HHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCCc
Confidence 334565444448999975 7778888899999999999985
No 123
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=42.83 E-value=1.1e+02 Score=21.08 Aligned_cols=126 Identities=15% Similarity=0.033 Sum_probs=72.1
Q ss_pred CCChHHHHHHHHHH-HHcCCCeeeccCC--CCCCcHHHHHHHhhccC-CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHH
Q 030178 33 PKPEPDMIALIRHA-INSGITFLDTSDI--YGPHTNEILLGKAFKGG-FRERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (182)
Q Consensus 33 ~~~~~~~~~~l~~a-~~~G~~~~Dta~~--Yg~g~~e~~lG~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (182)
....++..+.++.. .+.|+..+-.+.. .....-.+.+-...+.. ..-.+.+.|..... + ..
T Consensus 27 ~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~----------~-----~~ 91 (166)
T PF04055_consen 27 EMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLL----------D-----EE 91 (166)
T ss_dssp ECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTH----------C-----HH
T ss_pred cCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccch----------h-----HH
Confidence 34678888999998 5878776654421 11112333344444332 33456666665531 1 22
Q ss_pred HHHHHHHhCCCccceEEeecCC--------CCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 109 CEASLKRLDVDCIDLYYQHRID--------TQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d--------~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.-+.+.+++.+++.+=+-...+ +...+++.+++++.|++.|.-......+|+...+.++++++.+
T Consensus 92 ~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~ 164 (166)
T PF04055_consen 92 LLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIR 164 (166)
T ss_dssp HHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH
T ss_pred HHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhC
Confidence 3333445555555432222111 2344678999999999998764445567887788888877763
No 124
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=42.74 E-value=2.2e+02 Score=24.53 Aligned_cols=125 Identities=14% Similarity=0.018 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHHc-CCCeeeccCCCCCCcHH---HHHHHhhccCCCC-CEEEEeccCCCcCCCCCCCCCCHHHHHHHH
Q 030178 35 PEPDMIALIRHAINS-GITFLDTSDIYGPHTNE---ILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~-G~~~~Dta~~Yg~g~~e---~~lG~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 109 (182)
+.++..+++++.-++ |++-+=-+..=.-=.+. +.+-+.|++.+.- .+-|.|+..... +..|...+
T Consensus 139 s~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~----------P~RIT~el 208 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVL----------PQRITDEL 208 (417)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccccc----------ccccCHHH
Confidence 567888888887775 88755433211100122 2233445555543 367888876543 33344455
Q ss_pred HHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccc--cceeeccchhHHHHHHHhc
Q 030178 110 EASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCS--ILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~--~~~iGvs~~~~~~~~~l~~ 173 (182)
-+.|++.+ .-.+.+|.-.+..-..++.+|++.|++.|..-.. -+.=| .|-+++.+.+|.+
T Consensus 209 l~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG-VND~~~~l~~L~~ 270 (417)
T TIGR03820 209 VAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAG-VNDCPRIMKKLVH 270 (417)
T ss_pred HHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECC-cCCCHHHHHHHHH
Confidence 55566655 3345577755544467899999999999975210 11123 2777887777765
No 125
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=42.40 E-value=37 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCC
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYG 61 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg 61 (182)
+.....+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788999999999999999999885
No 126
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.56 E-value=1.1e+02 Score=20.89 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCC----------CCCCHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYG----------YHGDPAY 104 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~----------~~~~~~~ 104 (182)
|.......---.+++|.-|+-|-..|.-|. |.++---|-. ..+++++.+|+-+....+... ....-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~-evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGE-EVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccch-hhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 445566666677899999999999997543 4444322211 346899999976554322211 1122346
Q ss_pred HHHHHHHHHH-HhCCC
Q 030178 105 VRAACEASLK-RLDVD 119 (182)
Q Consensus 105 i~~~~~~sL~-~Lg~~ 119 (182)
++..+|..|. .+|-+
T Consensus 96 vr~~IE~~Lg~~igss 111 (117)
T COG3215 96 VRNQIETLLGGTIGSS 111 (117)
T ss_pred HHHHHHHHHHhhccCC
Confidence 8888887773 33433
No 127
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=41.48 E-value=60 Score=22.97 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCC-HHHHHHHHHHHhHc-Ccc
Q 030178 106 RAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTVISLSLLPSF-VKL 151 (182)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~al~~l~~~-G~i 151 (182)
+..+.+.|+.+....+|.++++..|.... ..+....++.|.+. |.-
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~ 101 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVR 101 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcE
Confidence 55667777777777899999998877543 45677778888776 543
No 128
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=41.39 E-value=71 Score=28.22 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCeee--ccCCCC--------CCcHHHHHHHhhcc----CCCCCEEEEeccCCCcCCCC----------C
Q 030178 41 ALIRHAINSGITFLD--TSDIYG--------PHTNEILLGKAFKG----GFRERAELATKFGIGIVDGK----------Y 96 (182)
Q Consensus 41 ~~l~~a~~~G~~~~D--ta~~Yg--------~g~~e~~lG~~l~~----~~r~~~~i~tK~~~~~~~~~----------~ 96 (182)
+-+....+.|++.+- ||..|. .|.-|.++. +-++ ..+..+++++=++--....+ -
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~-aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLN-AARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHH-HHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHH-HHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 455777788988773 665443 244555443 3333 34677888888763210000 0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhcC--
Q 030178 97 GYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFTN-- 174 (182)
Q Consensus 97 ~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~~-- 174 (182)
....+++.|+ +|+...|+|.+. .+++++++..++.+++|...+ ||+-.--.+-++++++.
T Consensus 185 ~vEvd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~S----Ig~~GN~ad~~~~l~~~~i 246 (546)
T PF01175_consen 185 IVEVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLS----IGLLGNAADLWEELVERGI 246 (546)
T ss_dssp EEES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EE----EEEES-HHHHHHHHHHTT-
T ss_pred EEEECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeE----EEEeccHHHHHHHHHHcCC
Confidence 0123344444 577778998642 458899999999999999998 99998888888888872
Q ss_pred -CCeeeec
Q 030178 175 -IDFFIYQ 181 (182)
Q Consensus 175 -~~~~~~q 181 (182)
.|+++=|
T Consensus 247 ~pDl~tDQ 254 (546)
T PF01175_consen 247 IPDLVTDQ 254 (546)
T ss_dssp --SEE---
T ss_pred CCCcccCC
Confidence 5776655
No 129
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=41.12 E-value=1.8e+02 Score=23.03 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=42.3
Q ss_pred HHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 110 EASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.+.+...+...=|+++.-.....++ ++.++++.+++.|--- |++++.....+..+.
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~~-----I~It~~~~s~L~~~a 163 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRTP--YVLGALRYARARGALT-----IGIACNPGSPLLQLA 163 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeE-----EEEECCCCChhHHhC
Confidence 4445556667788888887655544 7899999999999554 999998888777654
No 130
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=40.95 E-value=2e+02 Score=23.52 Aligned_cols=121 Identities=10% Similarity=0.036 Sum_probs=64.4
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCCC----cHHHHHHHhhccCC-CCCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPH----TNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g----~~e~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
..+.++..++++.+.+.|+..|--+. |-. .-.+++.. +++.+ ...+.|.|-.. .+.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~---------------ll~~ 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS---------------RLAR 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--cCCCccccHHHHHHH-HHhCCCCceEEEEeChh---------------HHHH
Confidence 34678888999999999998886542 211 12222222 22211 11344443321 1222
Q ss_pred HHHHHHHHhCCCccceEEeecCCCC--------CCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDTQ--------TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~--------~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
..+.|...|++++. +.++.+++. ..++.++++++.+++.|...-.+..+-+...|.+++.++.+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~ 177 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVE 177 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHH
Confidence 33445566766665 455554331 23678899999999888621001123334466666665554
No 131
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.63 E-value=1.4e+02 Score=23.22 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcC-ccccccceeeccchhHHHHHHHhc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFV-KLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G-~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.+.+...+-++ .|.++|++++++-....+......++.++.++++.+.+ .++ +..++.-..+.++.+.+
T Consensus 16 ~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~----~~~l~~~~~~~i~~a~~ 85 (265)
T cd03174 16 FSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVK----LQALVRNREKGIERALE 85 (265)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcE----EEEEccCchhhHHHHHh
Confidence 45565555444 47788988888776654422212346788888888888 455 23555544667777665
No 132
>PLN02321 2-isopropylmalate synthase
Probab=39.45 E-value=1.3e+02 Score=27.36 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCCee---eccCCCCCCcHHHHHHHhhccCC-CCCEEEEeccCCCcCCCCCCCCCCHHHHH
Q 030178 31 GPPKPEPDMIALIRHAINSGITFL---DTSDIYGPHTNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVR 106 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~---Dta~~Yg~g~~e~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 106 (182)
+...+.+...++++.+.++|.+.| ||.....|....+++....+..+ .+.+.|+...+... -
T Consensus 234 a~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~--------------G 299 (632)
T PLN02321 234 AGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDL--------------G 299 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC--------------C
Confidence 345578889999999999999887 56554443334444444333333 34577777776553 2
Q ss_pred HHHHHHHHHh--CCCccceEEeecCC--CCCCHHHHHHHHHHH
Q 030178 107 AACEASLKRL--DVDCIDLYYQHRID--TQTPIEVTVISLSLL 145 (182)
Q Consensus 107 ~~~~~sL~~L--g~~~lDl~~lh~~d--~~~~~~~~~~al~~l 145 (182)
-++.++|..+ |.+++|.-+.---. -..++++++-+|+..
T Consensus 300 lAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~ 342 (632)
T PLN02321 300 LSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCR 342 (632)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhc
Confidence 2344444443 66677654443221 134567777766654
No 133
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=39.04 E-value=2.1e+02 Score=23.24 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 106 RAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.+...+.++..+...=|+++.-...-.++ ++.++++.+++.|--- |++++.....+....
T Consensus 117 ~~~~~~~l~~~~l~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~t-----I~IT~~~~s~La~~a 176 (299)
T PRK05441 117 AELGAADLKAINLTAKDVVVGIAASGRTP--YVIGALEYARERGALT-----IGISCNPGSPLSKEA 176 (299)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeE-----EEEECCCCChhhHhC
Confidence 33445566677677788888887655444 7899999999999654 999988777776653
No 134
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=39.03 E-value=99 Score=25.89 Aligned_cols=101 Identities=19% Similarity=0.094 Sum_probs=55.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCee---eccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHH
Q 030178 29 LYGPPKPEPDMIALIRHAINSGITFL---DTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYV 105 (182)
Q Consensus 29 ~~~~~~~~~~~~~~l~~a~~~G~~~~---Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i 105 (182)
.+....+.+...++++.+.+.|.+.| ||...-.|....+++....+..+. .-|....+.. .
T Consensus 189 p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd--------------~ 252 (347)
T PLN02746 189 PIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPV--DKLAVHFHDT--------------Y 252 (347)
T ss_pred CccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCC--CeEEEEECCC--------------C
Confidence 35556688999999999999999988 665444443444444443322221 2234444333 2
Q ss_pred HHHHHHHHHHh--CCCccceEEeecC--------CCCCCHHHHHHHHHHH
Q 030178 106 RAACEASLKRL--DVDCIDLYYQHRI--------DTQTPIEVTVISLSLL 145 (182)
Q Consensus 106 ~~~~~~sL~~L--g~~~lDl~~lh~~--------d~~~~~~~~~~al~~l 145 (182)
--++.++|..+ |++++|.-+.--- .-..+.++.+-.|+.+
T Consensus 253 GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~ 302 (347)
T PLN02746 253 GQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGL 302 (347)
T ss_pred ChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhc
Confidence 23444555444 6777776544311 1124466666666543
No 135
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=38.83 E-value=2.1e+02 Score=23.05 Aligned_cols=29 Identities=0% Similarity=0.098 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHHH-cCCCeeeccCC-CC
Q 030178 33 PKPEPDMIALIRHAIN-SGITFLDTSDI-YG 61 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~-~G~~~~Dta~~-Yg 61 (182)
..+.++..++++..++ .|++.|+.+.. .+
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s 45 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASARVS 45 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCCCC
Confidence 3466888899988754 49999998764 44
No 136
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=38.81 E-value=2e+02 Score=22.95 Aligned_cols=127 Identities=9% Similarity=0.139 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeecc----------CCCCCCcHHHHHHHhhccCCCC-CEEEEeccCCCcCCCCCCCCCCHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTS----------DIYGPHTNEILLGKAFKGGFRE-RAELATKFGIGIVDGKYGYHGDPA 103 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta----------~~Yg~g~~e~~lG~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~ 103 (182)
+.++..++.+.+.+.|+..|+.- ..|+ .+.+.+.+.++...+. ++-|..|+.+.. +
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~-----------~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV-----------T 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc-----------h
Confidence 46778889999999999998852 1222 2345555555552222 577888886431 1
Q ss_pred HHHHHHHHHHHHhCCCccceEE------eecCCCC----------C-C--HHHHHHHHHHHhHcCccccccceeeccch-
Q 030178 104 YVRAACEASLKRLDVDCIDLYY------QHRIDTQ----------T-P--IEVTVISLSLLPSFVKLKCSILYCGVVAL- 163 (182)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~lDl~~------lh~~d~~----------~-~--~~~~~~al~~l~~~G~ir~~~~~iGvs~~- 163 (182)
.+. .+-+.++..|++.+++.- +|..... . + ..-.++.+.++++.=.+.- ||....
T Consensus 167 ~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipi----i~~GGI~ 241 (296)
T cd04740 167 DIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPI----IGVGGIA 241 (296)
T ss_pred hHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCE----EEECCCC
Confidence 222 233456677877665531 1110000 0 0 1124566667666534543 777664
Q ss_pred hHHHHHHHhc-CCCeee
Q 030178 164 VAKQMLLLFT-NIDFFI 179 (182)
Q Consensus 164 ~~~~~~~l~~-~~~~~~ 179 (182)
+++.+.+.+. ..|.++
T Consensus 242 ~~~da~~~l~~GAd~V~ 258 (296)
T cd04740 242 SGEDALEFLMAGASAVQ 258 (296)
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 5666666654 466554
No 137
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=38.41 E-value=79 Score=23.54 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCC--CCcHHHHHHHhhcc
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYG--PHTNEILLGKAFKG 75 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg--~g~~e~~lG~~l~~ 75 (182)
+.++++..+.++...+.|++.+-.+-.+. +...|..+++.+++
T Consensus 130 ~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~e 174 (176)
T PF05378_consen 130 PLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIRE 174 (176)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHHh
Confidence 55778888888888888888877666544 55678878777754
No 138
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=37.95 E-value=1.4e+02 Score=20.76 Aligned_cols=64 Identities=16% Similarity=0.015 Sum_probs=44.4
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCCC-CCHHHHHHHHHHHhHc
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV---DCIDLYYQHRIDTQ-TPIEVTVISLSLLPSF 148 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~ 148 (182)
+|=.+.|+-|++... ..+..+++.+.+..+.+.. ...|++++-.+... .++.+..+.|..|.++
T Consensus 47 ~R~G~~VsKK~~~~A--------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA--------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch--------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 455567777755322 6678888888888876632 36899999988654 4577778888777554
No 139
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=37.70 E-value=1.1e+02 Score=21.27 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=25.8
Q ss_pred EeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc
Q 030178 125 YQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 125 ~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+=..|...++....+.|+.+++.|.-+ +++.
T Consensus 96 v~i~aD~~~~~~~vv~vmd~~~~~G~~~-----v~l~ 127 (129)
T TIGR02801 96 VLIRADKTVPYGEVIKVMALLKQAGIEK-----VGLI 127 (129)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCe-----EEEe
Confidence 3445677888999999999999999877 6653
No 140
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=37.61 E-value=2e+02 Score=23.62 Aligned_cols=116 Identities=13% Similarity=0.012 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 030178 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV 118 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (182)
..++...|..+|+.++-++..+.+....+.+.++++. +.--+|..+...... +..+++. .++.......+
T Consensus 164 kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~--~Gps~I~v~sPC~~~-----~~~~~~~---~~~~~klAvet 233 (299)
T PRK11865 164 KKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV--EGPAYIQVLQPCPTG-----WGFPPEK---TIEIGRLAVET 233 (299)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC--CCCEEEEEECCCCCC-----CCCCHHH---HHHHHHHHHhc
Confidence 4566777888999999988877644455556666542 344555555543321 2233333 33444444446
Q ss_pred CccceEEeecCCCC---CCHH-H---HHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 119 DCIDLYYQHRIDTQ---TPIE-V---TVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 119 ~~lDl~~lh~~d~~---~~~~-~---~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.|.-||-+..--.. .+.. | ....-+-|+.+|.++. + ++++++++.+
T Consensus 234 g~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~----L-----~~~~~~~~q~ 286 (299)
T PRK11865 234 GYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKH----L-----TEEDIEILQK 286 (299)
T ss_pred CceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhc----C-----CHHHHHHHHH
Confidence 67777666542110 1111 0 1233455677999986 5 6666766654
No 141
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=37.16 E-value=1.4e+02 Score=20.46 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=43.9
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCCC-CCHHHHHHHHHHHhHc
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV---DCIDLYYQHRIDTQ-TPIEVTVISLSLLPSF 148 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~ 148 (182)
+|=.+.|+-|++. . ..+..+++.+.+..+.... ...|++++-.+... .++.+.-+.|..|.+.
T Consensus 38 ~R~GisVsKKvgk-A--------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN-A--------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc-h--------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4556778888764 2 6688888888888876532 35799999988553 4566777777776544
No 142
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=37.12 E-value=91 Score=22.22 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCC
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRER 80 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~ 80 (182)
+.++..++...|.+.|+.++|.+..-....+.....+.+++.+.++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~ 107 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEED 107 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhh
Confidence 5688999999999999998885553321224444555666645554
No 143
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=37.08 E-value=1.4e+02 Score=20.67 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=42.6
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCCC-CCHHHHHHHHHHHhHc
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD--VDCIDLYYQHRIDTQ-TPIEVTVISLSLLPSF 148 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~ 148 (182)
+|=.+.|+-|.+.. ...+..+++.+.++.+... ....|++++..+... .++.+..+.|.+|...
T Consensus 44 ~R~G~~VsKK~~~~--------AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKR--------AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcc--------hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 56667788885432 2567788888888876543 235699999988543 4566777777776544
No 144
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.05 E-value=88 Score=27.32 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc---CCCeeeec
Q 030178 114 KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT---NIDFFIYQ 181 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~---~~~~~~~q 181 (182)
.||.+.|+|.. ...++|++...++..++|.-.+ ||+..--++-++++++ ..|+++=|
T Consensus 205 ~Rl~t~y~d~~-------a~~ldeAl~~a~~~~~ag~p~S----Igl~GNaaei~~~l~~r~~~pD~vtDQ 264 (561)
T COG2987 205 KRLRTGYLDEI-------AETLDEALALAEEATAAGEPIS----IGLLGNAAEILPELLRRGIRPDLVTDQ 264 (561)
T ss_pred HHHhcchhhhh-------cCCHHHHHHHHHHHHhcCCceE----EEEeccHHHHHHHHHHcCCCCceeccc
Confidence 57778888842 2458899999999999999998 9999988999998887 36777666
No 145
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=36.96 E-value=3.2e+02 Score=24.76 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
+++-....++.|.++|+.+|=..+.-.+-++-+.-.++.++... .. ..-+..... +.++.+.+.+.+++ +.
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~--~~-~~~i~yt~s-----p~~t~e~~~~~ak~-l~ 164 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKK--HA-QGAICYTTS-----PVHTLDNFLELGKK-LA 164 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCC--EE-EEEEEecCC-----CCCCHHHHHHHHHH-HH
Confidence 66778889999999999876544444322343334444444121 11 111111110 23667777765555 45
Q ss_pred HhCCCccceEEeecCCCCCCHHHHHHHHHHHhHc
Q 030178 115 RLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSF 148 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~ 148 (182)
.+|. |.+.|-...-...+.++.+-+..++++
T Consensus 165 ~~Ga---d~I~IkDtaG~l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 165 EMGC---DSIAIKDMAGLLTPTVTVELYAGLKQA 195 (596)
T ss_pred HcCC---CEEEeCCcccCCCHHHHHHHHHHHHhh
Confidence 5664 344444433333344454555555443
No 146
>PRK13843 conjugal transfer protein TraH; Provisional
Probab=36.94 E-value=44 Score=25.70 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHhHcCccccccceeeccchh
Q 030178 134 PIEVTVISLSLLPSFVKLKCSILYCGVVALV 164 (182)
Q Consensus 134 ~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~ 164 (182)
..+|++...++|..+|.++ +|+.+|+
T Consensus 51 s~~EA~~~vr~l~~~g~v~-----VGl~Qf~ 76 (207)
T PRK13843 51 TPDEAMALIRQYVGQAVVR-----VGLTQYP 76 (207)
T ss_pred CHHHHHHHHHHHHhcCcee-----eeeEEec
Confidence 4678888888898888777 8888887
No 147
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.37 E-value=32 Score=27.33 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.8
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC
Q 030178 29 LYGPPKPEPDMIALIRHAINSGI 51 (182)
Q Consensus 29 ~~~~~~~~~~~~~~l~~a~~~G~ 51 (182)
.|..+.+++++.+++..|+++|+
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 47778899999999999999997
No 148
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=36.18 E-value=37 Score=22.69 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcccc
Q 030178 105 VRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~ 153 (182)
+...+=.-|.+.|.||.-.+.-.. ..+++++.+++++|.+.|++..
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler 53 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLER 53 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEE
Confidence 444455667778888776555443 5678999999999999999986
No 149
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=36.17 E-value=2.1e+02 Score=23.47 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=12.2
Q ss_pred ChHHHHHHHHHHHHcCCCeee
Q 030178 35 PEPDMIALIRHAINSGITFLD 55 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~D 55 (182)
+.++..++++.+.+.|+..+.
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~ 58 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLH 58 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEE
Confidence 445566666666666655554
No 150
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=36.00 E-value=88 Score=22.17 Aligned_cols=68 Identities=18% Similarity=0.054 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCeeeccCCCCCC------------------cHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCH
Q 030178 41 ALIRHAINSGITFLDTSDIYGPH------------------TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDP 102 (182)
Q Consensus 41 ~~l~~a~~~G~~~~Dta~~Yg~g------------------~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~ 102 (182)
..+...++.|+|+||---.++++ ..-..+.++|.+.|.+-+++.-|-.... ...
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~E~VIl~~~~~~~~--------~~~ 101 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDGNDGELVVYHGITSTSGITFEDVLNDIRDFLFEHPSEPVILSLKHEYSP--------EQQ 101 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEETTSSEEEEETTSEE-EEEHHHHHHHHHHHTTHSTTS-EEEEEEEESTH--------HHH
T ss_pred HhHHHHHhccCceEEEEEEcCCCCceEEEeCCEeeeeEeHHHHHHHHHHHHhcCCCeEEEEEeecccch--------hhH
Confidence 46788889999999844333221 1234466666667777777777765421 112
Q ss_pred HHHHHHHHHHHHHh
Q 030178 103 AYVRAACEASLKRL 116 (182)
Q Consensus 103 ~~i~~~~~~sL~~L 116 (182)
..+.+.+++.+...
T Consensus 102 ~~~~~~~~~~l~~~ 115 (146)
T PF00388_consen 102 NKLAEILKEILGDR 115 (146)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhh
Confidence 34556666666443
No 151
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=35.83 E-value=1.8e+02 Score=23.00 Aligned_cols=104 Identities=9% Similarity=-0.115 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHHHHcCCCeee----ccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLD----TSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~D----ta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 109 (182)
.++++.++-++.+.++|+.+|- +--.|+++..++++.++= ...-+-+-|++-.-... .......|++++
T Consensus 57 i~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~-~lGfe~iEIS~G~i~m~------~eek~~lIe~a~ 129 (258)
T COG1809 57 IDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAK-ELGFEAIEISNGTIPMS------TEEKCRLIERAV 129 (258)
T ss_pred ccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHH-HcCccEEEecCCeeecc------hHHHHHHHHHHH
Confidence 5888899999999999876653 223466777777776652 22445566665433211 112234466667
Q ss_pred HHHH---HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCc
Q 030178 110 EASL---KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVK 150 (182)
Q Consensus 110 ~~sL---~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ 150 (182)
++.+ ..+|....|....-. .+|-.+-+..+.++|.
T Consensus 130 d~Gf~vlsEvGkk~~e~~~~l~------~~d~~k~i~~dvdaGa 167 (258)
T COG1809 130 DEGFMVLSEVGKKDPESDSALS------PDDRVKLINDDVDAGA 167 (258)
T ss_pred hcccEEehhhcccCcchhhhcC------hHHHHHHHHHHHHcch
Confidence 6633 445654333332222 3445555555555553
No 152
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=35.67 E-value=78 Score=28.59 Aligned_cols=72 Identities=18% Similarity=0.068 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcCCCeeee
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTNIDFFIY 180 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~~~~~~~ 180 (182)
.++++.+ ..+|+|++-+.+.....+..+.+.....+.+......++. +||- |-+++++.++.+.+.+..+
T Consensus 13 ~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~----VgVfv~~~~~~i~~~~~~~~ld~v 83 (610)
T PRK13803 13 SALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRP----VGVFVNESAKAMLKFSKKNGIDFV 83 (610)
T ss_pred HHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCE----EEEEeCCCHHHHHHHHHhcCCCEE
Confidence 4555554 4589999998755543333444441333333332223443 9985 8889999999876666656
Q ss_pred cC
Q 030178 181 QL 182 (182)
Q Consensus 181 q~ 182 (182)
|+
T Consensus 84 QL 85 (610)
T PRK13803 84 QL 85 (610)
T ss_pred EE
Confidence 64
No 153
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=35.30 E-value=2.5e+02 Score=22.91 Aligned_cols=121 Identities=11% Similarity=0.055 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCC----CcHHHHHHHhhccCC-CCCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGP----HTNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~----g~~e~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
..+.++..++++.+.+.|++.|.-+. |. ..-.+++.. +++.+ -..+.|.|-... +.+
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~-i~~~~gi~~v~itTNG~l---------------l~~ 103 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVAR-LAALPGIEDIALTTNGLL---------------LAR 103 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHH-HHhcCCCCeEEEEeCchh---------------HHH
Confidence 35678899999999999988876543 21 112233332 22212 124556553221 112
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------CCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDT---------QTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~---------~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.-+.|.+.|++++- +.++..++ ...+.+++++++.+++.|.-.-.+..+-+.+.+.+++.++.+
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~ 176 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAE 176 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 22345555655443 33444332 124778889999999888631111123334456666655543
No 154
>PRK07360 FO synthase subunit 2; Reviewed
Probab=34.60 E-value=2.7e+02 Score=23.34 Aligned_cols=118 Identities=11% Similarity=0.043 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcH-HHHHHHhhccCCC--CCEEEEe--c--c--CCCcCCCCCCCCCCHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTN-EILLGKAFKGGFR--ERAELAT--K--F--GIGIVDGKYGYHGDPAY 104 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~-e~~lG~~l~~~~r--~~~~i~t--K--~--~~~~~~~~~~~~~~~~~ 104 (182)
.+.++..+.++.+.+.|++.|--...-.+... -+.+-+.++.+.+ .++-+.. . + .... .+ ..+.+.
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~-~G----~~~~e~ 165 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAARE-DG----LSYEEV 165 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhh-cC----CCHHHH
Confidence 57899999999999999999886654333222 2334455555322 2222221 0 0 0000 00 011222
Q ss_pred HHHHHHHHHHHhCCCccc--------eEEee--cCCCCCCHHHHHHHHHHHhHcCccccccceeeccc
Q 030178 105 VRAACEASLKRLDVDCID--------LYYQH--RIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVA 162 (182)
Q Consensus 105 i~~~~~~sL~~Lg~~~lD--------l~~lh--~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~ 162 (182)
++ -|+.-|++.+- =-..| +|. ..+.++.++.++.+++.|+--+...-+|+-.
T Consensus 166 l~-----~LkeAGld~~~~t~~e~l~~~vr~~i~p~-~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gE 227 (371)
T PRK07360 166 LK-----ALKDAGLDSMPGTAAEILVDEVRRIICPE-KIKTAEWIEIVKTAHKLGLPTTSTMMYGHVE 227 (371)
T ss_pred HH-----HHHHcCCCcCCCcchhhccHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCCceeeEEeeCCC
Confidence 22 23334554431 00001 122 2346677899999999999766555677744
No 155
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=34.58 E-value=85 Score=25.78 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=49.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHH
Q 030178 30 YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (182)
Q Consensus 30 ~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 109 (182)
||.+.+.++-.++++..-+.|.|++ .|+ |.++.+...||--. +..+.+ +.+
T Consensus 8 YG~PWs~e~R~~l~~f~~~~kmN~Y----iYA---------------PKdDpyhr~~Wre~---------Yp~~el-~~l 58 (306)
T PF07555_consen 8 YGRPWSHEDRLDLIRFLGRYKMNTY----IYA---------------PKDDPYHRSKWREP---------YPEEEL-AEL 58 (306)
T ss_dssp SSS---HHHHHHHHHHHHHTT--EE----EE-----------------TT-TTTTTTTTS------------HHHH-HHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceE----EEC---------------CCCChHHHhhhccc---------CCHHHH-HHH
Confidence 6777788999999999999999988 576 44444444444322 223332 334
Q ss_pred HHHHHHhCCCccceEEeecCCCCC------CHHHHHHHHHHHhHcCcc
Q 030178 110 EASLKRLDVDCIDLYYQHRIDTQT------PIEVTVISLSLLPSFVKL 151 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~------~~~~~~~al~~l~~~G~i 151 (182)
++..+.-....+++++-=.|.-.. ++......++++.+.|.-
T Consensus 59 ~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr 106 (306)
T PF07555_consen 59 KELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVR 106 (306)
T ss_dssp HHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCC
Confidence 444444444556666655563332 244567778888888743
No 156
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=34.48 E-value=3.2e+02 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=12.7
Q ss_pred CChHHHHHHHHHHHHcCCCee
Q 030178 34 KPEPDMIALIRHAINSGITFL 54 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~ 54 (182)
.+.+.+.++++.+.++|.+.|
T Consensus 143 ~d~~~l~~~~~~~~~~Ga~~i 163 (494)
T TIGR00973 143 TEIPFLARIVEAAINAGATTI 163 (494)
T ss_pred CCHHHHHHHHHHHHHcCCCEE
Confidence 355566666666666666555
No 157
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=34.44 E-value=1.7e+02 Score=20.74 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC--CccceEEeecC
Q 030178 65 NEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV--DCIDLYYQHRI 129 (182)
Q Consensus 65 ~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--~~lDl~~lh~~ 129 (182)
+-+++-+||++....-++...|.+--.... .++..+.=-+.+++.|.+||+ ++++.+++...
T Consensus 42 n~~fvl~Al~~GaDGV~v~GC~~geCHy~~---GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~ 105 (132)
T COG1908 42 NPEFVLKALRKGADGVLVAGCKIGECHYIS---GNYKAKRRMELLKELLKELGIEPERVRVLWISAA 105 (132)
T ss_pred CHHHHHHHHHcCCCeEEEecccccceeeec---cchHHHHHHHHHHHHHHHhCCCcceEEEEEEehh
Confidence 345566777663333344556665322111 124445556678889999987 47887776643
No 158
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=34.40 E-value=2e+02 Score=21.67 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHH
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEAS 112 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 112 (182)
..+.++..++++.+.+.|..-+-+.+.+- +...+.++. ..+.+.+=.+.... ....+.....+++.
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v-----~~~~~~l~~---~~~~v~~~~~fp~g------~~~~~~k~~eve~A 78 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNPCFV-----PLAREALKG---SGVKVCTVIGFPLG------ATTTEVKVAEAREA 78 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcHHHH-----HHHHHHcCC---CCcEEEEEEecCCC------CCcHHHHHHHHHHH
Confidence 34778899999999998877776554332 223344433 33555555543321 13345555667777
Q ss_pred HHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHc
Q 030178 113 LKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSF 148 (182)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~ 148 (182)
++ +|.+-+|++.--..-.........+.+.++++.
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~ 113 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEA 113 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHh
Confidence 76 598989876654332223345566666666654
No 159
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=34.28 E-value=3e+02 Score=23.55 Aligned_cols=117 Identities=15% Similarity=-0.039 Sum_probs=64.6
Q ss_pred CeeeccCCCCCCcHHHHHHHhhcc-CCCCCEEEEeccCCCcCC-----C----CCC--CCCCHHHHHHHHHHHHHHhCCC
Q 030178 52 TFLDTSDIYGPHTNEILLGKAFKG-GFRERAELATKFGIGIVD-----G----KYG--YHGDPAYVRAACEASLKRLDVD 119 (182)
Q Consensus 52 ~~~Dta~~Yg~g~~e~~lG~~l~~-~~r~~~~i~tK~~~~~~~-----~----~~~--~~~~~~~i~~~~~~sL~~Lg~~ 119 (182)
..+-|-..-| +-++-+++++. .++..++|+.=.|..... + +++ ...+..--.+.+-..|+.+.
T Consensus 96 ~t~Qt~GGTG---AL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~-- 170 (396)
T COG1448 96 ATVQTLGGTG---ALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAP-- 170 (396)
T ss_pred hheecCCcch---HHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCC--
Confidence 3444444455 77888888887 566678888776654311 1 111 01111112233333444444
Q ss_pred ccceEEee----cCCCCCCHHHHHHHHHHH-hHcCccccc-cceeecc---chhHHHHHHHhc
Q 030178 120 CIDLYYQH----RIDTQTPIEVTVISLSLL-PSFVKLKCS-ILYCGVV---ALVAKQMLLLFT 173 (182)
Q Consensus 120 ~lDl~~lh----~~d~~~~~~~~~~al~~l-~~~G~ir~~-~~~iGvs---~~~~~~~~~l~~ 173 (182)
.=|+++|| +|.-.++..+.|+.+-++ +++|+|--+ +-|-|+. +-++..++.+..
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~ 233 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAE 233 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHH
Confidence 56788877 566667778899887666 567777532 3345554 233444455544
No 160
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=34.17 E-value=2.7e+02 Score=23.04 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=54.5
Q ss_pred CCChHHHHHHH-------HHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc--CCCCCEEEEeccCCCcCCCCCCCCCCHH
Q 030178 33 PKPEPDMIALI-------RHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGIVDGKYGYHGDPA 103 (182)
Q Consensus 33 ~~~~~~~~~~l-------~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~--~~r~~~~i~tK~~~~~~~~~~~~~~~~~ 103 (182)
..+.++..+++ +.|.++|++.+|---..| =++.++|.. +.|.+=| +.. ......
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahG-----yLl~qFlsp~~N~RtD~y-----GGs-------lenR~r 192 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHG-----HLIDQFLSPLTNRRTDEY-----GGS-------LENRMR 192 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-----hHHHHhhCCCcCCCCCcC-----CCC-------HHHHhH
Confidence 34555555544 466778999998554333 257777765 2332222 110 012235
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCC---CCCHHHHHHHHHHHhHcCccc
Q 030178 104 YVRAACEASLKRLDVDCIDLYYQHRIDT---QTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~lDl~~lh~~d~---~~~~~~~~~al~~l~~~G~ir 152 (182)
.+.+-++...+..|.+..=-+=+-..+. ....+|+.+.++.|.+.|.+.
T Consensus 193 ~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd 244 (343)
T cd04734 193 FLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLID 244 (343)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCC
Confidence 5666677777777644221111222111 123667777777887777554
No 161
>PRK10508 hypothetical protein; Provisional
Probab=34.02 E-value=1.3e+02 Score=24.84 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhH
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPS 147 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~ 147 (182)
.+++.|.+.+++..+++|++.+ +++.+. .+.++.++.++.|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHHH
Confidence 6899999999999999998877 333332 355566666655543
No 162
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=33.96 E-value=48 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCC---CeeeccCCCC-CCcHHHHHHHhhcc
Q 030178 37 PDMIALIRHAINSGI---TFLDTSDIYG-PHTNEILLGKAFKG 75 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~---~~~Dta~~Yg-~g~~e~~lG~~l~~ 75 (182)
..+.++++.|-+.|. +||||+..|. -+.-|+--+++++.
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~ 179 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIAR 179 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHH
Confidence 347788999999886 7999999996 33334444444443
No 163
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=33.88 E-value=2.2e+02 Score=22.00 Aligned_cols=94 Identities=9% Similarity=-0.064 Sum_probs=51.9
Q ss_pred CCeeec-cCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 030178 51 ITFLDT-SDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 51 ~~~~Dt-a~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (182)
.+.+.. +..|... ..+.+.++.++.| +++..+.|..-... +........+.+.+.+-+.++-|+ +.+..+++..|
T Consensus 19 F~~VEvn~TFY~~P-~~~t~~~W~~~~p-~~F~F~vK~~~~iT-H~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~P 94 (230)
T PF01904_consen 19 FNTVEVNSTFYRIP-SPETVARWREQTP-EGFRFSVKAPQLIT-HERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFP 94 (230)
T ss_dssp -SEEEE-HHCCSSS--HHHHHHHHCTS--TT-EEEEE--CCCC-CCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--
T ss_pred CCeEEECcccCCCC-CHHHHHHHHhhCC-CCeEEEEeccHHhe-ecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcC
Confidence 555554 3467643 5567888887744 67999999875431 101111235666466666999998 89999999998
Q ss_pred CCCCCHHHHHHHHHHHhHc
Q 030178 130 DTQTPIEVTVISLSLLPSF 148 (182)
Q Consensus 130 d~~~~~~~~~~al~~l~~~ 148 (182)
.....-.+.++.|..+.+.
T Consensus 95 psf~~~~~~~~~l~~~l~~ 113 (230)
T PF01904_consen 95 PSFRFTPENLERLDAFLDR 113 (230)
T ss_dssp TT--S-HHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhh
Confidence 7544445555555555544
No 164
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=33.80 E-value=2.5e+02 Score=22.59 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCC--------c----HHHHHHHhhcc------C--CCCCEEEEeccCCCc---
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPH--------T----NEILLGKAFKG------G--FRERAELATKFGIGI--- 91 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g--------~----~e~~lG~~l~~------~--~r~~~~i~tK~~~~~--- 91 (182)
.++...++=+..+++|-+.+-|.. |+.. . .+++...+.+- . ..+.++|.--+++..
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~TnT-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l 117 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTNT-YQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYL 117 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC--TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S---
T ss_pred CHHHHHHHHHHHHHCCCCeEEecC-CcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccc
Confidence 567788888899999999998886 5521 1 13333333222 1 122478888777653
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHH
Q 030178 92 --VDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSL 144 (182)
Q Consensus 92 --~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~ 144 (182)
..-......+.+.+++...+-++.|--..+|++++.-.....-...+++++++
T Consensus 118 ~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~ 172 (305)
T PF02574_consen 118 SGSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKE 172 (305)
T ss_dssp -----CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHH
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHh
Confidence 11122244677888888888888775556999999975443334455555555
No 165
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=33.78 E-value=1.6e+02 Score=20.25 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=26.2
Q ss_pred EeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc
Q 030178 125 YQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 125 ~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
.+=..|...++....+.|+.+++.|.-+ +++.
T Consensus 87 v~i~aD~~~~~~~vv~v~d~~~~~G~~~-----v~l~ 118 (121)
T TIGR02804 87 VTLKSDKEAKFQDFVTITDMLKAKEHEN-----VQIV 118 (121)
T ss_pred EEEEeCCCCCHhHHHHHHHHHHHcCCCe-----EEEE
Confidence 4445678888999999999999999776 7764
No 166
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.77 E-value=66 Score=22.69 Aligned_cols=107 Identities=10% Similarity=-0.062 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCCcH----HHHHHHhhccCCCCC-----EEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGPHTN----EILLGKAFKGGFRER-----AELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~----e~~lG~~l~~~~r~~-----~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
+++.+++..+++.|.+.|= +|+|.+ +.+..++....+.+. +.+.+........ ....+ ..
T Consensus 22 ~~aa~~i~~~~~~gg~i~~----~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~--~~ 90 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFV----CGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISN-----DLEYD--EG 90 (138)
T ss_dssp HHHHHHHHHHHHTT--EEE----EESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHH-----HTTGG--GT
T ss_pred HHHHHHHHHHHHCCCEEEE----EcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhc-----ccchh--hH
Confidence 5577888999999999884 555554 444445443322111 1111111000000 00011 11
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
-.++.+.......=|++++-+..-.. ..+++++++.++.|..- ||++
T Consensus 91 ~~~~~~~~~~~~~gDvli~iS~SG~s--~~vi~a~~~Ak~~G~~v-----IalT 137 (138)
T PF13580_consen 91 FARQLLALYDIRPGDVLIVISNSGNS--PNVIEAAEEAKERGMKV-----IALT 137 (138)
T ss_dssp HHHHHHHHTT--TT-EEEEEESSS-S--HHHHHHHHHHHHTT-EE-----EEEE
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCC--HHHHHHHHHHHHCCCEE-----EEEe
Confidence 12333344445678999988865444 36799999999999886 8775
No 167
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=33.53 E-value=2.9e+02 Score=23.25 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=51.6
Q ss_pred CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCC-CCCCHH---HHHHHHHHHhHcCccc
Q 030178 78 RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD-VDCIDLYYQHRID-TQTPIE---VTVISLSLLPSFVKLK 152 (182)
Q Consensus 78 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~~~lDl~~lh~~d-~~~~~~---~~~~al~~l~~~G~ir 152 (182)
..++.|.-++.+..... ....+.+... .+-+.|+..| ++|+++..-+.-. ...... -.....+.++....+-
T Consensus 214 g~~~~vg~Rls~~d~~~--~~g~~~~e~~-~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~p 290 (363)
T COG1902 214 GADFPVGVRLSPDDFFD--GGGLTIEEAV-ELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIP 290 (363)
T ss_pred CCCceEEEEECccccCC--CCCCCHHHHH-HHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCC
Confidence 44455677776543200 0123333333 3666778888 6888887766531 111111 1223344455554454
Q ss_pred cccceeecc-chhHHHHHHHhcC--CCeeee
Q 030178 153 CSILYCGVV-ALVAKQMLLLFTN--IDFFIY 180 (182)
Q Consensus 153 ~~~~~iGvs-~~~~~~~~~l~~~--~~~~~~ 180 (182)
.|.+. -+++++.+++++. +|++.+
T Consensus 291 ----vi~~G~i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 291 ----VIAVGGINDPEQAEEILASGRADLVAM 317 (363)
T ss_pred ----EEEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence 24444 3678888888885 777653
No 168
>PLN02540 methylenetetrahydrofolate reductase
Probab=33.50 E-value=3.6e+02 Score=24.30 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHh
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRL 116 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 116 (182)
+...+.+++-.+.|-.|+|.+..-|....+..+.-+..-...-.+-..-.+..+. .++..+...++.. ..+
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd--------~n~~~L~~~L~~a-~~~ 85 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTN--------MPVEKIDHALETI-KSN 85 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC--------CCHHHHHHHHHHH-HHC
Confidence 3445555666677999999886555334444443332111111233344444332 5566777766665 677
Q ss_pred CCCc
Q 030178 117 DVDC 120 (182)
Q Consensus 117 g~~~ 120 (182)
|+..
T Consensus 86 GIrN 89 (565)
T PLN02540 86 GIQN 89 (565)
T ss_pred CCCE
Confidence 7653
No 169
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=33.48 E-value=1.7e+02 Score=24.16 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCC--CcHHH----HHHHhhcc------CCCCCE-----EEEeccCCCcC-----
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGP--HTNEI----LLGKAFKG------GFRERA-----ELATKFGIGIV----- 92 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~--g~~e~----~lG~~l~~------~~r~~~-----~i~tK~~~~~~----- 92 (182)
.++..+++-+..+++|.+.+-|...+.. +..|. ..-+..+. ..|+.+ +|..-+|+..+
T Consensus 51 ~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g 130 (317)
T KOG1579|consen 51 NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADG 130 (317)
T ss_pred ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCC
Confidence 3577888999999999999998874441 11111 11111111 112222 44445544321
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 030178 93 ---DGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 93 ---~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (182)
.+.+....+.+.+++..++-|+.+.-..+|++.+...
T Consensus 131 ~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETi 170 (317)
T KOG1579|consen 131 SEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETI 170 (317)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeec
Confidence 1234455777889999999999997777999999875
No 170
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=33.43 E-value=47 Score=24.58 Aligned_cols=64 Identities=16% Similarity=-0.041 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCcc----ceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhcC
Q 030178 105 VRAACEASLKRLDVDCI----DLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFTN 174 (182)
Q Consensus 105 i~~~~~~sL~~Lg~~~l----Dl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~~ 174 (182)
.++.++..++.+|.+.- +.+.-.+ .....+.++.+.|++|++.|.-- .-+||.+...++..++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g~~~-----~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERGYRL-----AILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCCCeE-----EEEeCCCHHHHHHHHHH
Confidence 35566666777775411 1111111 12234557888999999998543 55778887777766653
No 171
>PRK06740 histidinol-phosphatase; Validated
Probab=33.41 E-value=2.8e+02 Score=22.93 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCC
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDI 59 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~ 59 (182)
.+...++.++.|++.|+..+-.++.
T Consensus 59 ~~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 59 TTKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred ccchHHHHHHHHHHCCCcEEEECCC
Confidence 4466899999999999998866654
No 172
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=33.26 E-value=2.3e+02 Score=23.23 Aligned_cols=116 Identities=10% Similarity=-0.072 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 030178 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV 118 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (182)
..++...+..+|+.++-++..|.+....+.+-+|++. + .--+|......... +..+ ..+.++.....-.+
T Consensus 160 kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~-~-Gps~I~~~spC~~~-----~~~~---~~~~~~~~k~Av~t 229 (300)
T PRK11864 160 KKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEI-R-GFKFIHLLAPCPPG-----WRFD---PDKTIEIARLAVET 229 (300)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC-C-CCEEEEEeCCCCCC-----CCcC---hHHHHHHHHHHHHc
Confidence 4577777888999999998888765666777777743 2 33334444332210 1122 23444555555556
Q ss_pred CccceEEeecC----CCCC----CHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 119 DCIDLYYQHRI----DTQT----PIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 119 ~~lDl~~lh~~----d~~~----~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.|.-||-+..- +... +.......-+-|+.+|.++. + ++++++++.+
T Consensus 230 g~wplye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~----L-----~~~~~~~~q~ 283 (300)
T PRK11864 230 GVWPLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKH----L-----TEEEIKGLQE 283 (300)
T ss_pred CCceEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhc----C-----CHHHHHHHHH
Confidence 66666655531 1111 11222344567889999986 5 3566666654
No 173
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=32.94 E-value=1.5e+02 Score=23.71 Aligned_cols=16 Identities=6% Similarity=-0.323 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHcCccc
Q 030178 137 VTVISLSLLPSFVKLK 152 (182)
Q Consensus 137 ~~~~al~~l~~~G~ir 152 (182)
..|-.|+++++.|+.-
T Consensus 150 ~~wpTL~em~~~GkrV 165 (267)
T cd08590 150 PNWPTKEDMLNSGKQV 165 (267)
T ss_pred CCCCCHHHHHhCCCEE
Confidence 3577889999888874
No 174
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=32.86 E-value=1e+02 Score=26.87 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcCCCeeeecC
Q 030178 114 KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTNIDFFIYQL 182 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~~~~~~~q~ 182 (182)
..+|+|++-+.+...-.+..+.+ ..+.+.+... ++. +||- |-+++.+.++.+.+.+..+|+
T Consensus 274 ~~~GaD~lGfIf~~~SpR~V~~~-~a~~i~~~l~---v~~----VgVfv~~~~~~i~~i~~~~~lD~vQL 335 (454)
T PRK09427 274 YDAGAVYGGLIFVEKSPRYVSLE-QAQEIIAAAP---LRY----VGVFRNADIEDIVDIAKQLSLAAVQL 335 (454)
T ss_pred HhCCCCEEeeEeCCCCCCCCCHH-HHHHHHHhCC---CCE----EEEEeCCCHHHHHHHHHHcCCCEEEe
Confidence 45788888886433222223333 3333333222 665 8887 888999999887666555664
No 175
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=32.74 E-value=2.7e+02 Score=22.64 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHH--Hhhcc-----CCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLG--KAFKG-----GFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG--~~l~~-----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 109 (182)
..+.+.+..+++.|.|.|=. |.|.|-+ +| .+..= .+++.+..---.+...-. ......++-.+.-
T Consensus 47 a~Av~~~~~~l~~GGRLiY~----GAGTSGR-LGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~---~avEGaED~~~~g 118 (298)
T COG2103 47 AAAVDIIAAALKQGGRLIYI----GAGTSGR-LGVLDASECPPTFGVPPELVIGLIAGGEEAIL---KAVEGAEDDEELG 118 (298)
T ss_pred HHHHHHHHHHHHcCCeEEEE----cCCcccc-hhccchhhCCCCcCCChhHeeeeecCCHHHHH---HhhcCccccHHHH
Confidence 44667777888889999832 3344433 22 11111 234433322222211000 0012345566777
Q ss_pred HHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 110 EASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
++-|+.++...-|++.==...-.+|+ +..+|+..++.|-.. ||+|+..-..+.+..
T Consensus 119 ~~dl~~~~lt~~DvvvgIaASGrTPY--vigal~yAr~~Ga~T-----i~iacNp~s~i~~~A 174 (298)
T COG2103 119 EADLKNIGLTAKDVVVGIAASGRTPY--VIGALEYARQRGATT-----IGIACNPGSAISRIA 174 (298)
T ss_pred HHHHHHcCCCcCCEEEEEecCCCCch--hhHHHHHHHhcCCeE-----EEeecCCCchhhhhc
Confidence 88899999999998775555445553 589999999999987 999998888887765
No 176
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=32.72 E-value=3.7e+02 Score=24.23 Aligned_cols=111 Identities=8% Similarity=-0.056 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCeeecc--------CCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHH
Q 030178 32 PPKPEPDMIALIRHAINSGITFLDTS--------DIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPA 103 (182)
Q Consensus 32 ~~~~~~~~~~~l~~a~~~G~~~~Dta--------~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~ 103 (182)
...+.++..+++....+.|+..|++. ..|-.....+.+...-+..+.-.+..-....+...- .++..+
T Consensus 16 ~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~----~~ypdd 91 (582)
T TIGR01108 16 TRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGY----RHYADD 91 (582)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEcccccccc----ccCchh
Confidence 34577888899999999999999875 122222334445333222343333332222111000 012223
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 104 YVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
-+++-++.+.+. |++.+-++ . ...+....-.+++..++.|+.-
T Consensus 92 vv~~~v~~a~~~-Gvd~irif---~--~lnd~~n~~~~i~~ak~~G~~v 134 (582)
T TIGR01108 92 VVERFVKKAVEN-GMDVFRIF---D--ALNDPRNLQAAIQAAKKHGAHA 134 (582)
T ss_pred hHHHHHHHHHHC-CCCEEEEE---E--ecCcHHHHHHHHHHHHHcCCEE
Confidence 344445544433 54443333 2 2223456677777778888653
No 177
>PRK09389 (R)-citramalate synthase; Provisional
Probab=32.72 E-value=3.4e+02 Score=23.80 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 31 GPPKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
+...+.++..++.+...+.|+..|+...
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3455778999999999999999999874
No 178
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=32.44 E-value=1.3e+02 Score=20.51 Aligned_cols=49 Identities=27% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCccce-EEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccc
Q 030178 109 CEASLKRLDVDCIDL-YYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVA 162 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl-~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~ 162 (182)
++..|+.+.-.+-+. -.+=.+|...++....+.|+.+++.|.-+ +++..
T Consensus 78 L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~~~g~~~-----v~l~t 127 (130)
T PF02472_consen 78 LEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALREAGFTK-----VSLAT 127 (130)
T ss_dssp HHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHHHTT--------EE-TT
T ss_pred HHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCE-----EEEEE
Confidence 444555554444544 33334677888999999999999999887 77653
No 179
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=32.32 E-value=2.7e+02 Score=22.44 Aligned_cols=69 Identities=7% Similarity=-0.217 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHh------CCCccceEEeecCCCCC-CHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 100 GDPAYVRAACEASLKRL------DVDCIDLYYQHRIDTQT-PIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~L------g~~~lDl~~lh~~d~~~-~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.+.+.-.+..+-+.+.+ +++.|-|=.+..+.... +..++++|-+.|.++|-+= +=-++-++--.+++.
T Consensus 81 ~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-----lPY~~~D~v~a~rLe 155 (267)
T CHL00162 81 QTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-----LPYINADPMLAKHLE 155 (267)
T ss_pred CCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-----eecCCCCHHHHHHHH
Confidence 44444444444445555 56777776666555443 3679999999999999874 445555555555554
Q ss_pred c
Q 030178 173 T 173 (182)
Q Consensus 173 ~ 173 (182)
+
T Consensus 156 d 156 (267)
T CHL00162 156 D 156 (267)
T ss_pred H
Confidence 3
No 180
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=32.25 E-value=2.5e+02 Score=22.11 Aligned_cols=115 Identities=18% Similarity=0.064 Sum_probs=64.0
Q ss_pred cceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc---------CCCCCEEEEeccC
Q 030178 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG---------GFRERAELATKFG 88 (182)
Q Consensus 18 ~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~---------~~r~~~~i~tK~~ 88 (182)
++.=|...| +.+...++.+.|-..|-+|+|-|.. -+++..+... +..+.++-+.+.|
T Consensus 16 KVIsGLnNF--------d~~~V~~i~~AA~~ggAt~vDIAad------p~LV~~~~~~s~lPICVSaVep~~f~~aV~AG 81 (242)
T PF04481_consen 16 KVISGLNNF--------DAESVAAIVKAAEIGGATFVDIAAD------PELVKLAKSLSNLPICVSAVEPELFVAAVKAG 81 (242)
T ss_pred hheeCcccc--------CHHHHHHHHHHHHccCCceEEecCC------HHHHHHHHHhCCCCeEeecCCHHHHHHHHHhC
Confidence 345566544 7788999999999999999998852 2333332211 1112222222222
Q ss_pred CCcCC-----C--CCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCc
Q 030178 89 IGIVD-----G--KYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVK 150 (182)
Q Consensus 89 ~~~~~-----~--~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ 150 (182)
..--+ . .....++.+.|.+-.+++.+.|=--.+-+-.-| -.+++++.+--++|.+.|.
T Consensus 82 AdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH----iL~ld~Qv~LA~~L~~~Ga 146 (242)
T PF04481_consen 82 ADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPH----ILPLDQQVQLAEDLVKAGA 146 (242)
T ss_pred CCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCc----cccHHHHHHHHHHHHHhCC
Confidence 21100 0 112456778888888888877742223322223 3457778877778876663
No 181
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.17 E-value=2.8e+02 Score=22.56 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
..+-+...+...=|+++.-.....++ ++.++++.+++.|.-- |++++.....+.+..
T Consensus 116 ~~~~l~a~~l~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~~-----IaIT~~~~s~La~~a 172 (296)
T PRK12570 116 GAQDLKAIGLTADDVVVGIAASGRTP--YVIGALEYAKQIGATT-----IALSCNPDSPIAKIA 172 (296)
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeE-----EEEECCCCChhHHhC
Confidence 34445556666679988887655544 6899999999999554 999988777766544
No 182
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.11 E-value=3.3e+02 Score=23.60 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCeeeccCCCC-CCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 030178 41 ALIRHAINSGITFLDTSDIYG-PHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVD 119 (182)
Q Consensus 41 ~~l~~a~~~G~~~~Dta~~Yg-~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~ 119 (182)
..+.+++++|- +-+.-.|| ||.--..+++.+++.-...+.-.+-+. .+.+++++.++++.+.++..
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-----------~gvkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-----------SGVKDLREIIEEARKNRLLG 103 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-----------ccHHHHHHHHHHHHHHHhcC
Confidence 57888888873 33444787 566677788888773333333222221 45788999999998777643
Q ss_pred ccceEE---eecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhH
Q 030178 120 CIDLYY---QHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVA 165 (182)
Q Consensus 120 ~lDl~~---lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~ 165 (182)
+==+++ +|+.+. ..=++|--.++.|.|- +||-++-|+
T Consensus 104 r~tiLflDEIHRfnK-----~QQD~lLp~vE~G~ii----lIGATTENP 143 (436)
T COG2256 104 RRTILFLDEIHRFNK-----AQQDALLPHVENGTII----LIGATTENP 143 (436)
T ss_pred CceEEEEehhhhcCh-----hhhhhhhhhhcCCeEE----EEeccCCCC
Confidence 333343 455443 3457788888999998 499986654
No 183
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=31.92 E-value=1.1e+02 Score=20.95 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCC-HHHHHHHHHHHhHcCc
Q 030178 106 RAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTVISLSLLPSFVK 150 (182)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~al~~l~~~G~ 150 (182)
+..+++.|+.+.....|.+++..++.... ..+....++.|...|.
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi 96 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHGV 96 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCCC
Confidence 45566666666657899999999877544 4467777788877664
No 184
>PRK08508 biotin synthase; Provisional
Probab=31.66 E-value=2.7e+02 Score=22.25 Aligned_cols=125 Identities=14% Similarity=0.009 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeec--c-CCCCCCcHHHHHHHhhccCCCC--CEEEEeccCCCcCCCCCCCCCCHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLDT--S-DIYGPHTNEILLGKAFKGGFRE--RAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dt--a-~~Yg~g~~e~~lG~~l~~~~r~--~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (182)
.+.++..+.++.+.+.|++-|-. + ..+.....| .+-+.++..... .+.+.+-.+. .+++.+++-
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e-~~~ei~~~ik~~~p~l~i~~s~G~----------~~~e~l~~L 108 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLE-YVAEAAKAVKKEVPGLHLIACNGT----------ASVEQLKEL 108 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHH-HHHHHHHHHHhhCCCcEEEecCCC----------CCHHHHHHH
Confidence 36788888889999999987752 2 223221222 233333332111 2322211121 233433332
Q ss_pred HHHHHHHhCC--CccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHH
Q 030178 109 CEASLKRLDV--DCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 109 ~~~sL~~Lg~--~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l 171 (182)
.+..+.++.. +.-+-+ +...-+...+++.++.++.+++.|.--+...-+|+ +-+.+++.+.
T Consensus 109 k~aGld~~~~~lEt~~~~-~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl-GEt~ed~~~~ 171 (279)
T PRK08508 109 KKAGIFSYNHNLETSKEF-FPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL-GESWEDRISF 171 (279)
T ss_pred HHcCCCEEcccccchHHH-hcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec-CCCHHHHHHH
Confidence 2222322221 111100 11112234478889999999999864443455777 4445544433
No 185
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=31.55 E-value=2e+02 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=19.6
Q ss_pred CEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 030178 80 RAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV 118 (182)
Q Consensus 80 ~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 118 (182)
++++..|-+... .+.+.+.+.+...|++++.
T Consensus 87 DiVviar~~~~~--------~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 87 DYVVVARSAAAK--------ASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CEEEEEeCCccc--------CCHHHHHHHHHHHHHHhCc
Confidence 555555555432 5667777777777777664
No 186
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=31.43 E-value=1.6e+02 Score=23.54 Aligned_cols=99 Identities=19% Similarity=0.104 Sum_probs=56.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCee---eccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHH
Q 030178 30 YGPPKPEPDMIALIRHAINSGITFL---DTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVR 106 (182)
Q Consensus 30 ~~~~~~~~~~~~~l~~a~~~G~~~~---Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 106 (182)
++...+.+...++++.+.+.|...| ||...-.|....+++....+..+ ++-|....+... -
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~--------------G 205 (274)
T cd07938 142 YEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFP--DEKLALHFHDTR--------------G 205 (274)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCC--CCeEEEEECCCC--------------C
Confidence 4445578889999999999999877 55544444344444544433222 344555554432 2
Q ss_pred HHHHHHHHHh--CCCccceEEeec---C-----CCCCCHHHHHHHHHH
Q 030178 107 AACEASLKRL--DVDCIDLYYQHR---I-----DTQTPIEVTVISLSL 144 (182)
Q Consensus 107 ~~~~~sL~~L--g~~~lDl~~lh~---~-----d~~~~~~~~~~al~~ 144 (182)
-++.+++..+ |++++|.-+.-- | .-..+.++.+-+|+.
T Consensus 206 lA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~ 253 (274)
T cd07938 206 QALANILAALEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEG 253 (274)
T ss_pred hHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHHh
Confidence 3344444433 777888655421 1 123567777777754
No 187
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.30 E-value=1.8e+02 Score=20.07 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKL 151 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~i 151 (182)
.++..++..+++.|++||. .|+...+.+..-+.+-...++|.|
T Consensus 69 ~sYptvR~kld~vlramgy---------~p~~e~~~~i~~~~i~~qle~Gei 111 (122)
T COG3877 69 ISYPTVRTKLDEVLRAMGY---------NPDSENSVNIGKKKIIDQLEKGEI 111 (122)
T ss_pred CccHHHHHHHHHHHHHcCC---------CCCCCChhhhhHHHHHHHHHcCCC
Confidence 5577899999999999995 455544444333444444556665
No 188
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=31.16 E-value=1.7e+02 Score=24.09 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHh
Q 030178 99 HGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLP 146 (182)
Q Consensus 99 ~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~ 146 (182)
..+++.|.+.+++..+.+|++++ +++.+....+.++..+.|+.+.
T Consensus 285 vGtPe~V~e~i~~~~~~~G~d~~---~l~~~~~~~~~~~~~~~i~~fa 329 (337)
T TIGR03858 285 VGSPETVAEKIADTIETLGLDRF---MLHYSVGSLPHEQVMRAIELYG 329 (337)
T ss_pred eeCHHHHHHHHHHHHHHcCCCeE---EEEecCCCCCHHHHHHHHHHHh
Confidence 35788888888887777775543 3443333344555666666543
No 189
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=31.04 E-value=2.1e+02 Score=20.75 Aligned_cols=64 Identities=9% Similarity=-0.046 Sum_probs=42.7
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC-CCCHHHHHHHHHHHhHc
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD--VDCIDLYYQHRIDT-QTPIEVTVISLSLLPSF 148 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~-~~~~~~~~~al~~l~~~ 148 (182)
+|=.+.|+-|++... ..+..+++.++++.+.+. +...|++++..+.. ..++.+..+.|..|.++
T Consensus 48 ~RlG~sVSKKvg~~A--------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA--------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc--------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455677777875322 567777777777776542 23448888888754 35577778888877655
No 190
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=30.97 E-value=2e+02 Score=24.16 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQH 127 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh 127 (182)
.+.+.+++.++..+ .++.+++.++.+.
T Consensus 167 qt~~~~~~~l~~~~-~l~p~~is~y~L~ 193 (380)
T PRK09057 167 QTLAAWRAELKEAL-SLAADHLSLYQLT 193 (380)
T ss_pred CCHHHHHHHHHHHH-hcCCCeEEeecce
Confidence 67788888888887 5688888888665
No 191
>PRK08392 hypothetical protein; Provisional
Probab=30.84 E-value=2.4e+02 Score=21.43 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCeeeccCCCCCC---cHHHHHHHh--hccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHH
Q 030178 37 PDMIALIRHAINSGITFLDTSDIYGPH---TNEILLGKA--FKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (182)
Q Consensus 37 ~~~~~~l~~a~~~G~~~~Dta~~Yg~g---~~e~~lG~~--l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 111 (182)
....+.++.|.+.|++.+-.++..... .-+..+.+. +++..+-++.+..-+.... ... +..++
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~--------~~~----~~~~~ 81 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP--------NGV----DITDD 81 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC--------Ccc----hhHHH
Confidence 347789999999999998666554211 111222222 1111122334444443221 111 22223
Q ss_pred HHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
.++. .||+ +..+|++......++.++.+.++.+.+.+.
T Consensus 82 ~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~d 119 (215)
T PRK08392 82 FAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVD 119 (215)
T ss_pred HHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCC
Confidence 3332 4555 667774322223456677777777777664
No 192
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=30.83 E-value=1.5e+02 Score=23.15 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCeeeccCCCCC----------------C---cHHHHHHHhhccCCCCCEEEEeccCC
Q 030178 42 LIRHAINSGITFLDTSDIYGP----------------H---TNEILLGKAFKGGFRERAELATKFGI 89 (182)
Q Consensus 42 ~l~~a~~~G~~~~Dta~~Yg~----------------g---~~e~~lG~~l~~~~r~~~~i~tK~~~ 89 (182)
-+...++.|+|+||---.+.. . ..-..+..+|++.|.+-++|.-+-..
T Consensus 42 ~i~~QL~~GiR~~dlr~~~~~~~~~~~~~H~~~~~~~~~~~~vL~~i~~fl~~~p~E~vil~~~~~~ 108 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAYDPDDGDLYVCHGLFLLNGQTLEDVLNEVKDFLDAHPSEVVILDLEHEY 108 (271)
T ss_pred CHHHHHhcCceEEEEEeeeecCCCcEEEEccccccCcccHHHHHHHHHHHHHHCCCcEEEEEEEccC
Confidence 456777899999985544432 0 12233555566666665556555543
No 193
>PRK00915 2-isopropylmalate synthase; Validated
Probab=30.79 E-value=3.8e+02 Score=23.68 Aligned_cols=26 Identities=4% Similarity=0.155 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
..+.++..++.+...+.|++.|+.+.
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 45778899999999999999999865
No 194
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.67 E-value=3.2e+02 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHHcCCCeeecc
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
..+.++..++++...+.|++.|+.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4577889999999999999999986
No 195
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=30.59 E-value=3.1e+02 Score=22.68 Aligned_cols=94 Identities=11% Similarity=-0.064 Sum_probs=49.3
Q ss_pred CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceE-Eee-cCCCCCC---HHH-HHHHHHHHhHcCcc
Q 030178 78 RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLY-YQH-RIDTQTP---IEV-TVISLSLLPSFVKL 151 (182)
Q Consensus 78 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~-~lh-~~d~~~~---~~~-~~~al~~l~~~G~i 151 (182)
..++.|..|+....... ...+.+... .+-+.|+..|+|++++- -.| .+.+..+ ... .....+++++.=.+
T Consensus 202 G~d~~v~iRi~~~D~~~---~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i 277 (353)
T cd02930 202 GEDFIIIYRLSMLDLVE---GGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI 277 (353)
T ss_pred CCCceEEEEecccccCC---CCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCC
Confidence 45677788876532110 113444443 34455678888777762 123 1211111 111 24556777776555
Q ss_pred ccccceeeccc-hhHHHHHHHhcC--CCeee
Q 030178 152 KCSILYCGVVA-LVAKQMLLLFTN--IDFFI 179 (182)
Q Consensus 152 r~~~~~iGvs~-~~~~~~~~l~~~--~~~~~ 179 (182)
.- ++.-. ++++.++++++. +|++.
T Consensus 278 PV----i~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 278 PV----IASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred CE----EEcCCCCCHHHHHHHHHCCCCChhH
Confidence 52 55544 468888888873 56553
No 196
>PRK12277 50S ribosomal protein L13e; Provisional
Probab=30.59 E-value=44 Score=21.78 Aligned_cols=31 Identities=10% Similarity=-0.094 Sum_probs=17.5
Q ss_pred HHHHhHcCccccccceeecc------chhHHHHHHHh
Q 030178 142 LSLLPSFVKLKCSILYCGVV------ALVAKQMLLLF 172 (182)
Q Consensus 142 l~~l~~~G~ir~~~~~iGvs------~~~~~~~~~l~ 172 (182)
++||+..|+-...+..|||+ |-+.+.+++|.
T Consensus 36 l~ELkaaGi~~~~ArtiGI~VD~RRrn~~~eNVerLk 72 (83)
T PRK12277 36 IGELEAAGLDIKNARKLGIRVDKRRKTVHEENVEALK 72 (83)
T ss_pred HHHHHHcCCCHHHhcccCeeecccccCCCHHHHHHHH
Confidence 55666666655545557776 44444554443
No 197
>PRK12435 ferrochelatase; Provisional
Probab=30.47 E-value=1.7e+02 Score=23.96 Aligned_cols=71 Identities=10% Similarity=-0.077 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec-CCCCCCHH-HHHHHHHHHhHc-CccccccceeeccchhHHHHHH
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHR-IDTQTPIE-VTVISLSLLPSF-VKLKCSILYCGVVALVAKQMLL 170 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~-~d~~~~~~-~~~~al~~l~~~-G~ir~~~~~iGvs~~~~~~~~~ 170 (182)
.-...+++..+..-++|+....++.+-.. ..+...+. ++-+.|++|.++ |.=+-.+..+|++.-+.+.+.+
T Consensus 194 pY~~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~E 267 (311)
T PRK12435 194 PYPDQLEETADLIAEQANVEHYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYD 267 (311)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHH
Confidence 34677888888888888875444443332 22222222 566788889877 7533213335555555554443
No 198
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=30.40 E-value=3.3e+02 Score=22.82 Aligned_cols=92 Identities=8% Similarity=-0.052 Sum_probs=45.9
Q ss_pred EEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc
Q 030178 82 ELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 82 ~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
+|..|+.............+.+..-..+-+.|+..|+|++++-.-++........+..+++.+..+ ..| +.+.
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~-~pv------~~~G 299 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH-GVI------IGAG 299 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCC-CCE------EEeC
Confidence 488888654210000011344443334555667778888876542221111111222233333332 223 4445
Q ss_pred chhHHHHHHHhcC--CCeeee
Q 030178 162 ALVAKQMLLLFTN--IDFFIY 180 (182)
Q Consensus 162 ~~~~~~~~~l~~~--~~~~~~ 180 (182)
.++++.++++++. +|++.+
T Consensus 300 ~~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 300 AYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CCCHHHHHHHHHcCCCCEEEE
Confidence 5789999988873 777753
No 199
>PRK00915 2-isopropylmalate synthase; Validated
Probab=30.33 E-value=3.8e+02 Score=23.63 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHh
Q 030178 133 TPIEVTVISLSLLP 146 (182)
Q Consensus 133 ~~~~~~~~al~~l~ 146 (182)
.++++.+-+|+...
T Consensus 239 a~lE~vv~~L~~~~ 252 (513)
T PRK00915 239 AALEEVVMALKTRK 252 (513)
T ss_pred ccHHHHHHHHHhhh
Confidence 44566666665543
No 200
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.32 E-value=3e+02 Score=22.34 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCCe--eeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCC-------CCCCCHHHHHHHH
Q 030178 39 MIALIRHAINSGITF--LDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKY-------GYHGDPAYVRAAC 109 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~--~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~-------~~~~~~~~i~~~~ 109 (182)
-.+.+..|++.|++- ||.|. +....|=+.-.+..+-...-.+-|-.-+|........ ..-.+|+..++=+
T Consensus 86 ~~e~i~~ai~~GftSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv 164 (284)
T PRK12737 86 DLDDIKKKVRAGIRSVMIDGSH-LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFV 164 (284)
T ss_pred CHHHHHHHHHcCCCeEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH
Confidence 357889999999984 56554 4411232333333222122334444444443211110 0112444444444
Q ss_pred HHHHHHhCCCccceEE--eecCCCCCC--HHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 110 EASLKRLDVDCIDLYY--QHRIDTQTP--IEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl~~--lh~~d~~~~--~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
++.|+|.+-+-. .|-.....| --+.++.+.+..+-.+|- .|-|..+.++++++.+
T Consensus 165 ----~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVl-----HGgSG~~~e~~~kai~ 223 (284)
T PRK12737 165 ----ERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVL-----HGASGVPDEDVKKAIS 223 (284)
T ss_pred ----HHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEE-----eCCCCCCHHHHHHHHH
Confidence 456877655444 566543322 124666677776778887 8999999999988764
No 201
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=30.13 E-value=2.1e+02 Score=21.12 Aligned_cols=75 Identities=19% Similarity=0.057 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCC--CHHHHHHHHHHHhH---c-CccccccceeeccchhH-----HHHHH
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQT--PIEVTVISLSLLPS---F-VKLKCSILYCGVVALVA-----KQMLL 170 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~--~~~~~~~al~~l~~---~-G~ir~~~~~iGvs~~~~-----~~~~~ 170 (182)
++.+.+++.+.+++.+.|-+|+-+=+ |.... ........+++|++ . +++-+ +-+..... ..+.+
T Consensus 89 ~~~f~~~~~~~v~~~~~DGidiD~E~-~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls----~a~~~~~~~~~~~~~~~~ 163 (210)
T cd00598 89 RAAFANSLVSFLKTYGFDGVDIDWEY-PGAADNSDRENFITLLRELRSALGAANYLLT----IAVPASYFDLGYAYDVPA 163 (210)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeeeC-CCCcCccHHHHHHHHHHHHHHHhcccCcEEE----EEecCChHHhhccCCHHH
Confidence 45566777777778887777764433 32221 12333444444443 3 55533 33322211 23566
Q ss_pred HhcCCCeeeec
Q 030178 171 LFTNIDFFIYQ 181 (182)
Q Consensus 171 l~~~~~~~~~q 181 (182)
+.+.+|++.+|
T Consensus 164 l~~~vD~v~vm 174 (210)
T cd00598 164 IGDYVDFVNVM 174 (210)
T ss_pred HHhhCCEEEEe
Confidence 66678888766
No 202
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.10 E-value=2.4e+02 Score=21.29 Aligned_cols=73 Identities=15% Similarity=0.018 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc-CCCeeee
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT-NIDFFIY 180 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~-~~~~~~~ 180 (182)
...+.+.+++..+.+|.+ +.++ .+...+..+..+.++++..+| +..++...--++.....++++.+ .++++.+
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 456888899999999963 3333 233445677889999998888 66622222222334566777665 3666653
No 203
>TIGR00035 asp_race aspartate racemase.
Probab=30.07 E-value=2e+02 Score=22.16 Aligned_cols=74 Identities=9% Similarity=-0.028 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCC------------CCHHHHHHHHHHHhHcCccccccceeeccchhHHH
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ------------TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQ 167 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~------------~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~ 167 (182)
.+.+..++-++.+-.+.+.++++.+.+++|+-. .+.....+.++.|.+.| +.. |-++..++..
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~----iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADF----IIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCE----EEECCccHHH
Confidence 455667777777777888899999999998431 12334667777777766 453 6666554433
Q ss_pred -HHHHhc--CCCee
Q 030178 168 -MLLLFT--NIDFF 178 (182)
Q Consensus 168 -~~~l~~--~~~~~ 178 (182)
++++.+ .+++.
T Consensus 89 ~~~~l~~~~~iPii 102 (229)
T TIGR00035 89 FAEDIQKAIGIPLI 102 (229)
T ss_pred HHHHHHHhCCCCEe
Confidence 344433 34554
No 204
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=29.91 E-value=2.9e+02 Score=22.13 Aligned_cols=129 Identities=9% Similarity=0.091 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHcC-CCeeec-------cC-CCCCCcHHHHHHHhhccCCC-CCEEEEeccCCCcCCCCCCCCCCHHH
Q 030178 35 PEPDMIALIRHAINSG-ITFLDT-------SD-IYGPHTNEILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAY 104 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G-~~~~Dt-------a~-~Yg~g~~e~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~ 104 (182)
+.++..++.+.+.+.| +..|+- +. .+..+...+.+-+.++.+.+ -++-|..|+.+.. +.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-----------~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV-----------TD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc-----------hh
Confidence 5677888889988998 898875 11 11122344555555555221 2577888887421 22
Q ss_pred HHHHHHHHHHHhCCCccceEE-eecC--CCC-------------C-C--HHHHHHHHHHHhHcCccccccceeeccch-h
Q 030178 105 VRAACEASLKRLDVDCIDLYY-QHRI--DTQ-------------T-P--IEVTVISLSLLPSFVKLKCSILYCGVVAL-V 164 (182)
Q Consensus 105 i~~~~~~sL~~Lg~~~lDl~~-lh~~--d~~-------------~-~--~~~~~~al~~l~~~G~ir~~~~~iGvs~~-~ 164 (182)
+. .+-+.++..|++.+++.- ++.. +.. . + ..-.++.+.++++.=.+.- ||+... +
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipv----i~~GGI~~ 245 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPI----IGMGGISS 245 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCE----EEECCCCC
Confidence 32 234456777877665421 0110 000 0 0 0113556666665433443 777665 5
Q ss_pred HHHHHHHhc-CCCeee
Q 030178 165 AKQMLLLFT-NIDFFI 179 (182)
Q Consensus 165 ~~~~~~l~~-~~~~~~ 179 (182)
++.+.+++. ..|.++
T Consensus 246 ~~da~~~l~aGAd~V~ 261 (301)
T PRK07259 246 AEDAIEFIMAGASAVQ 261 (301)
T ss_pred HHHHHHHHHcCCCcee
Confidence 666666554 456554
No 205
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=29.81 E-value=3.4e+02 Score=22.87 Aligned_cols=66 Identities=9% Similarity=-0.041 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHhCCC-ccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 100 GDPAYVRAACEASLKRLDVD-CIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~-~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.+++.+.+-++...+.+... ...+-+-.+|+..+ -+.|+.|++.|.-|- ++||-+++.+.++.+-+
T Consensus 87 L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~-----~e~L~~l~~~Gvnri---siGvQS~~~~~L~~l~R 153 (394)
T PRK08898 87 LSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFE-----AEKFAQFRASGVNRL---SIGIQSFNDAHLKALGR 153 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCC-----HHHHHHHHHcCCCeE---EEecccCCHHHHHHhCC
Confidence 66788888888777777653 23444455665543 377889999998886 89999999998876543
No 206
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=29.66 E-value=2.3e+02 Score=25.25 Aligned_cols=59 Identities=12% Similarity=-0.067 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHH
Q 030178 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l 171 (182)
......+++.+.|+-||.++ |-.. -....++...+++++|.++|++= +|..+.+++++.
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~~~----~qSdr~~~y~~~a~~Li~~G~AY-------~C~cs~eel~~~ 116 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DSVS----FTSDYFEPIRCYAIILIEEGLAY-------MDDTPQEEMKKE 116 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CCCc----cccccHHHHHHHHHHHHHcCCeE-------ecCCCHHHHHHH
Confidence 34567778889999999874 5211 12244777889999999999984 567777777554
No 207
>PRK06233 hypothetical protein; Provisional
Probab=29.62 E-value=3.4e+02 Score=22.78 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=31.6
Q ss_pred HHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCC
Q 030178 68 LLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRID 130 (182)
Q Consensus 68 ~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d 130 (182)
.+-++++.. .+++.|.+.++.-...+++....+.+.|.. .|..++ +|.|.+.+.+
T Consensus 225 ~~N~~~~~~-p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~----~l~~~~---vd~~~lE~~~ 279 (372)
T PRK06233 225 VINKALADL-PEDLTVTTHICRGNFKSTYLFSGGYEPVAK----YLGQLN---YDGFFLEYDN 279 (372)
T ss_pred HHHHHHhCC-CcCCEEEEEeeCCCCCCcccccCcHHHHHH----HHHhCC---CCEEEEecCC
Confidence 344555543 446788888876554455555555666554 344555 5666666643
No 208
>PLN02775 Probable dihydrodipicolinate reductase
Probab=29.55 E-value=2.4e+02 Score=23.00 Aligned_cols=57 Identities=12% Similarity=-0.060 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+++.|..+.-+|.|++.+.+- ..+-+.+.++.+.+.|+--- +|.+.|+.++++++.+
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT----~P~a~~~~~~~~~~~g~~~V----vGTTG~~~e~l~~~~~ 124 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT----LPDAVNDNAELYCKNGLPFV----MGTTGGDRDRLLKDVE 124 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC----ChHHHHHHHHHHHHCCCCEE----EECCCCCHHHHHHHHh
Confidence 334444443357887777763 34567788888888887764 9999999999887765
No 209
>COG0218 Predicted GTPase [General function prediction only]
Probab=29.37 E-value=2.7e+02 Score=21.47 Aligned_cols=101 Identities=8% Similarity=-0.139 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHc------CCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHH
Q 030178 36 EPDMIALIRHAINS------GITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAAC 109 (182)
Q Consensus 36 ~~~~~~~l~~a~~~------G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 109 (182)
++.+.+++...++. .+-.+|.-..- -..+..+=+++......=+++.||..- .......+.+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~~~i~~~vv~tK~DK----------i~~~~~~k~l 157 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLELGIPVIVVLTKADK----------LKKSERNKQL 157 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHHcCCCeEEEEEcccc----------CChhHHHHHH
Confidence 45566677666654 34466755433 356777888888877788889999875 4466677788
Q ss_pred HHHHHHhCCCccce--EEeecCCCCCCHHHHHHHHHHHhHc
Q 030178 110 EASLKRLDVDCIDL--YYQHRIDTQTPIEVTVISLSLLPSF 148 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl--~~lh~~d~~~~~~~~~~al~~l~~~ 148 (182)
....+.|+.+..|- +++........+++.++++.+....
T Consensus 158 ~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 158 NKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 88888888776665 4444444456688888888776543
No 210
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.36 E-value=3.6e+02 Score=23.06 Aligned_cols=120 Identities=8% Similarity=-0.055 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCe-ee-ccCC-CCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHH
Q 030178 32 PPKPEPDMIALIRHAINSGITF-LD-TSDI-YGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (182)
Q Consensus 32 ~~~~~~~~~~~l~~a~~~G~~~-~D-ta~~-Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (182)
.+...+...++++.+-+.|+.+ ++ |+.. +. .++.+-+.++. .-+.+.++.|......-..+......+.+.+.
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~---~~e~~~~L~~~-gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~ 159 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFD---DPEIAEFLIDN-GVREVSFTVFATDPELRREWMKDPTPEASLQC 159 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccC---CHHHHHHHHHc-CCCEEEEecccCCHHHHHHHhCCCCHHHHHHH
Confidence 3445577899999999989863 34 4432 33 44444444322 23557788876532100000011122566666
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchh
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALV 164 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~ 164 (182)
++...+. ..-++-+.++...+......++++.+.++ |... +|+..|.
T Consensus 160 L~~L~e~-~~v~~~ivlIPGiND~eel~~ti~~L~~l---g~~~-----V~L~~y~ 206 (404)
T TIGR03278 160 LRRFCES-CEVHAASVIIPGVNDGDVLWKTCADLESW---GAKA-----LILMRFA 206 (404)
T ss_pred HHHHHhc-CCEEEEEEEeCCccCcHHHHHHHHHHHHC---CCCE-----EEEEecc
Confidence 6664442 21233333443333322234555555554 4332 6665554
No 211
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=29.34 E-value=1.5e+02 Score=20.48 Aligned_cols=54 Identities=15% Similarity=-0.018 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcccc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~ 153 (182)
.+...+.+.+...++.-..+.+-=-.+-.|+..--..+..+.|.+|+++|++..
T Consensus 53 ~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~n 106 (110)
T PF06819_consen 53 RDRSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIEN 106 (110)
T ss_pred EecccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCcc
Confidence 445667777777776666555422233445554446789999999999999975
No 212
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=29.31 E-value=3.1e+02 Score=22.18 Aligned_cols=68 Identities=12% Similarity=-0.056 Sum_probs=46.7
Q ss_pred CCeeeccCCCCCCcHHHHHHHhhccCCCCC-EEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 030178 51 ITFLDTSDIYGPHTNEILLGKAFKGGFRER-AELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 51 ~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~-~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (182)
|=+||+.- | --.++.+..+..|.++ +|+.--....+ ...+.+.|++...+.+..|...+++++.+.+-
T Consensus 8 IgvFDSGV--G---GLsVlrei~~~LP~e~~iY~~D~a~~PY------G~ks~e~I~~~~~~i~~~l~~~~ik~lVIACN 76 (269)
T COG0796 8 IGVFDSGV--G---GLSVLREIRRQLPDEDIIYVGDTARFPY------GEKSEEEIRERTLEIVDFLLERGIKALVIACN 76 (269)
T ss_pred EEEEECCC--C---cHHHHHHHHHHCCCCcEEEEecCCCCCC------CCCCHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 44788653 2 2345666666667766 44554443332 23678999999999999998888999999984
No 213
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=29.12 E-value=2e+02 Score=20.03 Aligned_cols=63 Identities=5% Similarity=-0.204 Sum_probs=44.5
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCCC-CCHHHHHHHHHHHhHc
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV---DCIDLYYQHRIDTQ-TPIEVTVISLSLLPSF 148 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~lDl~~lh~~d~~-~~~~~~~~al~~l~~~ 148 (182)
+|=.+.++-|++. ...+..+++.+.++.+.+.. .-.|++++-.+... .++.+..+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---------AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---------AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---------hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 5667888888874 25577788888877777654 24799999987653 4567777777766543
No 214
>PLN02321 2-isopropylmalate synthase
Probab=29.07 E-value=4.5e+02 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeeeccC-CCCCCcHHH
Q 030178 31 GPPKPEPDMIALIRHAINSGITFLDTSD-IYGPHTNEI 67 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~Dta~-~Yg~g~~e~ 67 (182)
+...+.++..++++...+.|+..|+.+. ..++.+.|.
T Consensus 102 g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~ 139 (632)
T PLN02321 102 GATLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEA 139 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHH
Confidence 3456889999999999999999999865 455544443
No 215
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=28.77 E-value=1.7e+02 Score=19.77 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=37.9
Q ss_pred CEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCC---ccceEEeecCCC-CCCHHHHHHHHHHHhH
Q 030178 80 RAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVD---CIDLYYQHRIDT-QTPIEVTVISLSLLPS 147 (182)
Q Consensus 80 ~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~---~lDl~~lh~~d~-~~~~~~~~~al~~l~~ 147 (182)
.+.++-|++... ..+..+++.+.++.+..... ..|++++-.+.. ..++.+..+.|..+.+
T Consensus 45 g~~vsKK~gk~A--------V~RNriKR~lRe~~R~~~~~l~~~~d~v~~~r~~~~~~~~~~l~~~l~~ll~ 108 (111)
T PF00825_consen 45 GFSVSKKVGKRA--------VKRNRIKRRLREAFRLNKPELPPGYDIVFIARPGALELSFEELEKELKKLLK 108 (111)
T ss_dssp EEEE-STTSS-H--------HHHHHHHHHHHHHHHHCTTTS-SSSEEEEEE-CGGGGS-HHHHHHHHHHHHH
T ss_pred EEEecCccccch--------hHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcCcCCHHHHHHHHHHHHH
Confidence 455555666422 56788888888888777543 678888887753 3556677777766643
No 216
>PRK07534 methionine synthase I; Validated
Probab=28.76 E-value=3.4e+02 Score=22.51 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCC-------cHH----HHHHHhhc---c-C--CCCCEEEEeccCCCcCCCCCC
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPH-------TNE----ILLGKAFK---G-G--FRERAELATKFGIGIVDGKYG 97 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g-------~~e----~~lG~~l~---~-~--~r~~~~i~tK~~~~~~~~~~~ 97 (182)
.++...++=+..+++|-+.+=|.. |+.. ..| ++.-.+++ + . ...+++|+.-+++....-...
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~TnT-y~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~ 121 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIILTNS-FGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPM 121 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEEecC-cccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCC
Confidence 567788888888999999998776 5421 112 22222221 1 1 123578888888764321111
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 030178 98 YHGDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 98 ~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (182)
...+.+...+....-++.|--.-+|++.+--.
T Consensus 122 ~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~ 153 (336)
T PRK07534 122 GALTHALAVEAFHEQAEGLKAGGADVLWVETI 153 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 22566777777777777774456899988753
No 217
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=28.69 E-value=38 Score=20.26 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=17.1
Q ss_pred cceecCCCCcccCcceecccc
Q 030178 5 RRMKLGSQGLEVSAQGLGCMG 25 (182)
Q Consensus 5 ~~~~lg~~g~~vs~l~lGt~~ 25 (182)
..+.|+.+|+.||.+-+||.-
T Consensus 16 ~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 16 LGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred ccccccccccCCceeeecchH
Confidence 346788999999999999863
No 218
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=28.69 E-value=45 Score=25.24 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=33.6
Q ss_pred HHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcCCCeeeecC
Q 030178 113 LKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTNIDFFIYQL 182 (182)
Q Consensus 113 L~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~~~~~~~q~ 182 (182)
...+|+||+-+.+ +|.. +-.-..+.+.++.+.-.-+. +||. |-+.+++.++.+...+..+|+
T Consensus 15 ~~~~g~d~~Gfi~--~~~S--~R~v~~~~a~~l~~~~~~~~----VgVf~~~~~~~I~~~~~~~~ld~vQL 77 (197)
T PF00697_consen 15 AAELGADYLGFIF--YPKS--PRYVSPDQARELVSAVPPKI----VGVFVNQSPEEILEIVEELGLDVVQL 77 (197)
T ss_dssp HHHHTSSEEEEE----TTC--TTB--HHHHHHHHCCSSSSE----EEEESSS-HHHHHHHHHHCTESEEEE
T ss_pred HHHcCCCEEeeec--CCCC--CCccCHHHHHHHHHhcCCCE----EEEEcCCCHHHHHHHHHHcCCCEEEE
Confidence 4578989988763 3331 11112333444433322223 8876 667888888888776666663
No 219
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.59 E-value=3.8e+02 Score=23.08 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHHcCCCee-----eccCCCCCCcHHHHHHHhhcc---C-CCCCEEEEeccCCCcCCCCCCCCCCHHH
Q 030178 34 KPEPDMIALIRHAINSGITFL-----DTSDIYGPHTNEILLGKAFKG---G-FRERAELATKFGIGIVDGKYGYHGDPAY 104 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~-----Dta~~Yg~g~~e~~lG~~l~~---~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~ 104 (182)
.+.++..+-++...+.|++.| |+. .|++.....-+.+.|+. . +..++.+.+ . .+..
T Consensus 178 r~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~-~y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~----~----------~p~~ 242 (445)
T PRK14340 178 HPFASVLDEVRALAEAGYREITLLGQNVN-SYSDPEAGADFAGLLDAVSRAAPEMRIRFTT----S----------HPKD 242 (445)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeecccc-hhhccCCCchHHHHHHHHhhcCCCcEEEEcc----C----------Chhh
Confidence 356777788888889998866 333 35521100112223322 1 111222222 1 1223
Q ss_pred HHHHHHHHHHHh--CCCccceEEeecC-------CCCCCHHHHHHHHHHHhHc--CccccccceeeccchhHHHHHHHhc
Q 030178 105 VRAACEASLKRL--DVDCIDLYYQHRI-------DTQTPIEVTVISLSLLPSF--VKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 105 i~~~~~~sL~~L--g~~~lDl~~lh~~-------d~~~~~~~~~~al~~l~~~--G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+.+.+-+.+.+. ++.++++=+=|.- ......++..++++.+++. |..-..-+-+|+-+-+.+.+++.++
T Consensus 243 l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~ 322 (445)
T PRK14340 243 ISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLS 322 (445)
T ss_pred cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHH
Confidence 333333334333 4445544332221 2233456777888888777 6532222346777777777766554
No 220
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=28.54 E-value=3.2e+02 Score=22.14 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCCe--eeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCC-------CCCCCHHHHHHHH
Q 030178 39 MIALIRHAINSGITF--LDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKY-------GYHGDPAYVRAAC 109 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~--~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~-------~~~~~~~~i~~~~ 109 (182)
-.+.+..|++.|++- ||.|. +.-..|=+.-.+..+-...-.+.+-.-+|........ ..-.+++. .
T Consensus 84 ~~e~i~~ai~~GFtSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~pee----a 158 (282)
T TIGR01858 84 SLDDIRQKVHAGVRSAMIDGSH-FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQE----A 158 (282)
T ss_pred CHHHHHHHHHcCCCEEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHH----H
Confidence 457789999999985 46554 4411222222222222122334444444433211110 00123333 3
Q ss_pred HHHHHHhCCCccceEE--eecCCCCCC--HHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 110 EASLKRLDVDCIDLYY--QHRIDTQTP--IEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 110 ~~sL~~Lg~~~lDl~~--lh~~d~~~~--~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
++-.++.|+|.+-+-. .|-.....| --+.++.+.+..+-.+|- .|-|..+.++++++.+
T Consensus 159 ~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVl-----HGgSG~~~e~~~~ai~ 221 (282)
T TIGR01858 159 KEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVL-----HGASDVPDEDVRRTIE 221 (282)
T ss_pred HHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEE-----ecCCCCCHHHHHHHHH
Confidence 4445677877655433 565443322 124566666666677886 8999999999988764
No 221
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=28.45 E-value=2.7e+02 Score=21.27 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccch
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
.+++.+.+.++ . -.+|++|+|...+ .+.++.|.+......+++ +.+.+.
T Consensus 64 ~~~~~i~~~~~----~---~~~d~vQLHg~e~----~~~~~~l~~~~~~~iik~----i~v~~~ 112 (210)
T PRK01222 64 ASDEEIDEIVE----T---VPLDLLQLHGDET----PEFCRQLKRRYGLPVIKA----LRVRSA 112 (210)
T ss_pred CCHHHHHHHHH----h---cCCCEEEECCCCC----HHHHHHHHhhcCCcEEEE----EecCCH
Confidence 34555555443 3 3578999997532 233444444333456776 888653
No 222
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=28.31 E-value=1e+02 Score=24.98 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhCCCccc--e-EEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 102 PAYVRAACEASLKRLDVDCID--L-YYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lD--l-~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
.+...+.+.+.+++||+. .| . +.-+.+ .....+++.+.+|.++|.|-
T Consensus 81 ~~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY 130 (312)
T cd00668 81 VEEMSGEHKEDFRRLGIS-YDWSDEYITTEP---EYSKAVELIFSRLYEKGLIY 130 (312)
T ss_pred HHHHHHHHHHHHHHhCcc-ccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEE
Confidence 455778889999999984 33 2 222221 22457889999999999984
No 223
>PRK10200 putative racemase; Provisional
Probab=28.11 E-value=2.9e+02 Score=21.44 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC------------CCCHHHHHHHHHHHhHcCccccccceeeccc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDT------------QTPIEVTVISLSLLPSFVKLKCSILYCGVVA 162 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~------------~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~ 162 (182)
.+.+..++-++..-.+.+.++++.+.+++++- ..+.....+.++.|.+.|- +. |-+..
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~-~~----iviaC 83 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGA-EG----IVLCT 83 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC-CE----EEECC
Confidence 45667777778888888889999999999732 1234456677888888884 43 65553
No 224
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=27.99 E-value=72 Score=16.53 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCeeecc
Q 030178 40 IALIRHAINSGITFLDTS 57 (182)
Q Consensus 40 ~~~l~~a~~~G~~~~Dta 57 (182)
.+.++.++++|+..|-|-
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 467799999999998764
No 225
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=27.85 E-value=3.4e+02 Score=22.25 Aligned_cols=124 Identities=13% Similarity=0.029 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHc-CCCeeeccCCCCCC--cHHHHHHHhh---ccCCC-CCEEEEeccCCCcCCCCCCCCCCHHHHHH
Q 030178 35 PEPDMIALIRHAINS-GITFLDTSDIYGPH--TNEILLGKAF---KGGFR-ERAELATKFGIGIVDGKYGYHGDPAYVRA 107 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~-G~~~~Dta~~Yg~g--~~e~~lG~~l---~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 107 (182)
..++..+++...-+. |++.+--+. |.. ..+..+.+.+ +..+. ..+-|.||.... .+..|.+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~----------~p~rit~ 193 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVV----------IPDRITS 193 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHHHHHHhCCCCcEEEEecCccee----------eHHHhhH
Confidence 445677777766544 887776554 311 1222233333 33332 346677776532 2456666
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccc--cceeeccchhHHHHHHHhc
Q 030178 108 ACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCS--ILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 108 ~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~--~~~iGvs~~~~~~~~~l~~ 173 (182)
.+-+.|+..|...+ ..+|.-.+..-..++.++++.|++.|..-.. -+.=|| |.+.+.+.++.+
T Consensus 194 el~~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgi-NDn~~~l~~L~~ 258 (321)
T TIGR03821 194 GLCDLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGV-NDNADTLAALSE 258 (321)
T ss_pred HHHHHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCC-CCCHHHHHHHHH
Confidence 66667776664433 2346532222235788999999999964210 000111 457777777664
No 226
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=27.81 E-value=1.6e+02 Score=24.95 Aligned_cols=125 Identities=12% Similarity=-0.026 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHHc-CCCeeeccCCCCCC-----cHHHHHHHhhccCCC-CCEEEEeccCCCcCCCCCCCCCCHHHHH
Q 030178 34 KPEPDMIALIRHAINS-GITFLDTSDIYGPH-----TNEILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAYVR 106 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~-G~~~~Dta~~Yg~g-----~~e~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 106 (182)
...++..+++++--++ -++-+=.+ -|+. ..-+.+.+.|++++. +-+-|.||+.... +..|.
T Consensus 141 ~~~~~~~~al~YIa~hPeI~eVllS--GGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~----------P~RIt 208 (369)
T COG1509 141 FNKEEWDKALDYIAAHPEIREVLLS--GGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVL----------PQRIT 208 (369)
T ss_pred CCHHHHHHHHHHHHcCchhheEEec--CCCccccCHHHHHHHHHHHhcCCceeEEEeecccceec----------hhhcc
Confidence 3566676666665554 22211111 1221 223345566666665 4466999997654 66666
Q ss_pred HHHHHHHHHhCCCccceEE-eecCCCCCCHHHHHHHHHHHhHcCcccc--ccceeeccchhHHHHHHHhcC
Q 030178 107 AACEASLKRLDVDCIDLYY-QHRIDTQTPIEVTVISLSLLPSFVKLKC--SILYCGVVALVAKQMLLLFTN 174 (182)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~-lh~~d~~~~~~~~~~al~~l~~~G~ir~--~~~~iGvs~~~~~~~~~l~~~ 174 (182)
..+-+.|.+. +.-+++ .|.--+..--.++-+|++.|++.|..-. .-+.=|| |-+++.+.+|.+.
T Consensus 209 ~~L~~~l~~~---~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGV-ND~~evl~~L~~~ 275 (369)
T COG1509 209 DELCEILGKS---RKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGV-NDDPEVLKELSRA 275 (369)
T ss_pred HHHHHHHhcc---CceEEEEcccCChhhcCHHHHHHHHHHHHcCceeecchheeccc-CCCHHHHHHHHHH
Confidence 5555555443 333333 3432222223478899999999998631 1122355 7778887777653
No 227
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=27.78 E-value=86 Score=25.75 Aligned_cols=68 Identities=18% Similarity=0.102 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHH-HHHHHHHHHhHcCccccccceeeccchhHHHH
Q 030178 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE-VTVISLSLLPSFVKLKCSILYCGVVALVAKQM 168 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~-~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~ 168 (182)
-...+++..+..-++||.....+.+-....+...+. .+-+.|++|.++|.=+-...-+|+..-+.+.+
T Consensus 205 Y~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl 273 (316)
T PF00762_consen 205 YPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETL 273 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHH
Confidence 467788888888899997765554444333322111 47788999999993332133455555554444
No 228
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.74 E-value=3e+02 Score=21.58 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHHcCCCeeecc
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
..+.++..++++...+.|+..+++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g 40 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVG 40 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3467889999999999999999986
No 229
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=27.34 E-value=3.5e+02 Score=22.26 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHc-CCCeeeccCCCCCCc--HHHHH---HHhhccCCC-CCEEEEeccCCCcCCCCCCCCCCHHHHHHH
Q 030178 36 EPDMIALIRHAINS-GITFLDTSDIYGPHT--NEILL---GKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (182)
Q Consensus 36 ~~~~~~~l~~a~~~-G~~~~Dta~~Yg~g~--~e~~l---G~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (182)
.++..++++..-+. |++-+--+. |+.. ....+ -+.+++.+. ..+-+.|+..... +..+.+.
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~----------P~rit~e 211 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVI----------PQRITDE 211 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--CccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccC----------chhcCHH
Confidence 56788888877654 777665443 2111 22223 233333332 3566777764322 3345555
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcc
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKL 151 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~i 151 (182)
+-+.|++.|...+. ..|.-.+..-.+++.++++.|++.|..
T Consensus 212 l~~~L~~~~~~~~~--vsh~nh~~Ei~~~~~~ai~~L~~aGi~ 252 (331)
T TIGR00238 212 LCELLASFELQLML--VTHINHCNEITEEFAEAMKKLRTVNVT 252 (331)
T ss_pred HHHHHHhcCCcEEE--EccCCChHhCCHHHHHHHHHHHHcCCE
Confidence 66667776754333 333321112246789999999999975
No 230
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=27.34 E-value=2.3e+02 Score=23.31 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHcCccccccceeecc-chhHHHHHHHhcC
Q 030178 135 IEVTVISLSLLPSFVKLKCSILYCGVV-ALVAKQMLLLFTN 174 (182)
Q Consensus 135 ~~~~~~al~~l~~~G~ir~~~~~iGvs-~~~~~~~~~l~~~ 174 (182)
.++.-+.++.+.++|.++- +|=| ..++++++.+.+.
T Consensus 272 p~~~a~~~~~f~~~g~vnI----vGGCCGTTPeHIraia~~ 308 (311)
T COG0646 272 PEYMAEALAEFAEEGGVNI----VGGCCGTTPEHIRAIAEA 308 (311)
T ss_pred HHHHHHHHHHHHHhCCcee----eccccCCCHHHHHHHHHH
Confidence 5678899999999999985 6654 7789999988754
No 231
>PLN02666 5-oxoprolinase
Probab=27.33 E-value=6.5e+02 Score=25.28 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=63.3
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccCC--CCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCC-----CCCC---H
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSDI--YGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYG-----YHGD---P 102 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~~--Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~-----~~~~---~ 102 (182)
+.++++..++++...+.|+.-+-.+-. |-+...|..+.+.+++...-.+.++..+.+....-++. ..+- -
T Consensus 172 plde~~v~~~~~~l~~~gv~avAV~~l~S~~NP~HE~~v~ei~~e~~~~~VslShei~~~~~e~eR~~TavlnAyl~p~~ 251 (1275)
T PLN02666 172 PLDEEALRPLLQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHTASVDAYLTPVI 251 (1275)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCcCChHHHHHHHHHHHhcCCCcEEEcchhhhhccccchHHHHHHHHHHHHHH
Confidence 568899999999999999998765553 44667899999999874434467777776643111100 0011 1
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCCCHH
Q 030178 103 AYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE 136 (182)
Q Consensus 103 ~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~ 136 (182)
......+++.|+..+.. ..++++++-....+.+
T Consensus 252 ~~yl~~l~~~l~~~g~~-~~l~im~sdGG~~~~~ 284 (1275)
T PLN02666 252 KEYLSGFLSGFDDGLGD-VNVLFMQSDGGLTPES 284 (1275)
T ss_pred HHHHHHHHHHHHhcCCC-CCEEEEecCCCcCCHH
Confidence 22333445555544433 5788888865444433
No 232
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.29 E-value=2.7e+02 Score=20.80 Aligned_cols=54 Identities=7% Similarity=-0.073 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHH
Q 030178 104 YVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAK 166 (182)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~ 166 (182)
..++-+...|++.+.-..|+.+.|+|+...+ =.+++++..--+|= +|..+-...
T Consensus 126 tt~~~~~~ile~~~~~~~~f~la~~PErl~~----G~a~~d~~~~~rvV-----~G~~~~~~~ 179 (185)
T PF03721_consen 126 TTEELLKPILEKRSGKKEDFHLAYSPERLRE----GRAIEDFRNPPRVV-----GGCDDESAE 179 (185)
T ss_dssp HHHHHHHHHHHHHCCTTTCEEEEE------T----TSHHHHHHSSSEEE-----EEESSHHHH
T ss_pred eehHhhhhhhhhhcccccCCeEEECCCccCC----CCcchhccCCCEEE-----EeCCcHHHH
Confidence 4555566666666543388899998866432 23456666666664 777766665
No 233
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=27.16 E-value=87 Score=20.83 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=27.4
Q ss_pred HHHHHHHhHcCccccccceeec----cch---hHHHHHHHhcCCCe
Q 030178 139 VISLSLLPSFVKLKCSILYCGV----VAL---VAKQMLLLFTNIDF 177 (182)
Q Consensus 139 ~~al~~l~~~G~ir~~~~~iGv----s~~---~~~~~~~l~~~~~~ 177 (182)
.+...+|.++|+++.+|+..|- |-| +.+++++++..+++
T Consensus 28 ~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLPL 73 (91)
T PF02426_consen 28 KARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSLPL 73 (91)
T ss_pred HHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhCCC
Confidence 5667899999999987776664 222 46777777765544
No 234
>PRK08185 hypothetical protein; Provisional
Probab=26.98 E-value=2.8e+02 Score=22.47 Aligned_cols=119 Identities=16% Similarity=0.065 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCCe--eeccCCCCCCcHHHHHHHhhcc---CCCCCEEEEeccCCCcCCCC--C-----CCCCCHHHHH
Q 030178 39 MIALIRHAINSGITF--LDTSDIYGPHTNEILLGKAFKG---GFRERAELATKFGIGIVDGK--Y-----GYHGDPAYVR 106 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~--~Dta~~Yg~g~~e~~lG~~l~~---~~r~~~~i~tK~~~~~~~~~--~-----~~~~~~~~i~ 106 (182)
-.+.++.|++.|++. ||-+. +. -|+-+..+.+- ...-.+.+-..++....... . ..-.+++...
T Consensus 80 ~~e~i~~ai~~Gf~SVM~D~S~-l~---~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~ 155 (283)
T PRK08185 80 TIEDVMRAIRCGFTSVMIDGSL-LP---YEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAE 155 (283)
T ss_pred CHHHHHHHHHcCCCEEEEeCCC-CC---HHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHH
Confidence 356678899999774 56553 44 33333333222 12334444444444321100 0 0012444444
Q ss_pred HHHHHHHHHhCCCccceEEe-----ecCCCC--CC-H-HHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 107 AACEASLKRLDVDCIDLYYQ-----HRIDTQ--TP-I-EVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~l-----h~~d~~--~~-~-~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+-+ ++.| +|.+-+ |-..+. .+ + -+.++.+.+..+-.++- +|-|+.+.++++++.+
T Consensus 156 ~f~----~~Tg---vD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVl-----HGgsg~~~e~~~~ai~ 219 (283)
T PRK08185 156 DFV----SRTG---VDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVL-----HGGSANPDAEIAESVQ 219 (283)
T ss_pred HHH----HhhC---CCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEE-----ECCCCCCHHHHHHHHH
Confidence 433 3446 456666 765332 12 1 23444444444666775 9999999999987764
No 235
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.78 E-value=1.4e+02 Score=22.47 Aligned_cols=60 Identities=10% Similarity=-0.110 Sum_probs=42.0
Q ss_pred HHHHhCCC----ccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhcCCCe
Q 030178 112 SLKRLDVD----CIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFTNIDF 177 (182)
Q Consensus 112 sL~~Lg~~----~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~~~~~ 177 (182)
.|++.|+. -+|--++-|-+++ .-++.-+.+.+++++|.-- +=+||-+...+....+.+++
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~-~tpe~~~W~~e~k~~gi~v-----~vvSNn~e~RV~~~~~~l~v 85 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPD-ATPELRAWLAELKEAGIKV-----VVVSNNKESRVARAAEKLGV 85 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCC-CCHHHHHHHHHHHhcCCEE-----EEEeCCCHHHHHhhhhhcCC
Confidence 44555543 2555556554443 3567889999999999775 66899999999988875543
No 236
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.58 E-value=2.7e+02 Score=20.71 Aligned_cols=119 Identities=6% Similarity=-0.114 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
+.+++.++++.+ +.|+..+.....+-....-..+...-+..+...+++.+|+.... ...+++ +.
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~----------~~~~~~-----~~ 73 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAG----------EYEAEQ-----AF 73 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccch----------HHHHHH-----HH
Confidence 568899999888 88999998742221001123344333323445677888876211 111222 22
Q ss_pred HhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccch-h-HHHHHHHhc-CCCeee
Q 030178 115 RLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVAL-V-AKQMLLLFT-NIDFFI 179 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~-~-~~~~~~l~~-~~~~~~ 179 (182)
..| .|.+.+|.-.+ ....-+.++..++.|+--- +++++. + .++++.+.+ .++++.
T Consensus 74 ~~G---ad~i~vh~~~~---~~~~~~~i~~~~~~g~~~~----~~~~~~~t~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 74 AAG---ADIVTVLGVAD---DATIKGAVKAAKKHGKEVQ----VDLINVKDKVKRAKELKELGADYIG 131 (206)
T ss_pred HcC---CCEEEEeccCC---HHHHHHHHHHHHHcCCEEE----EEecCCCChHHHHHHHHHcCCCEEE
Confidence 444 66777886432 2223455555666665422 444442 2 355555554 456554
No 237
>PRK00228 hypothetical protein; Validated
Probab=26.52 E-value=64 Score=24.44 Aligned_cols=35 Identities=14% Similarity=-0.061 Sum_probs=23.0
Q ss_pred HHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 139 VISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 139 ~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.+.++.+.....-..+.+++|-|.|.+.|++.=++
T Consensus 113 ~d~l~~l~~~~~~~~~~~flGyaGW~~gQLe~Ei~ 147 (191)
T PRK00228 113 RDVLEALATGPGPEGVLVALGYAGWGAGQLEQEIE 147 (191)
T ss_pred HHHHHHHhcCCCCCcEEEEEEECCCCHHHHHHHHH
Confidence 34455554433334456699999999999976544
No 238
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=26.47 E-value=1.1e+02 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcc
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKL 151 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~i 151 (182)
.+...+.+++.+++||++ .|.+... ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 456788889999999985 5753222 1111234567889999999999
No 239
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=26.43 E-value=3.2e+02 Score=21.39 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEec
Q 030178 43 IRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATK 86 (182)
Q Consensus 43 l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK 86 (182)
...|.++|..++ | .|+++...-++..+-+++|++-
T Consensus 83 ~~~Ak~aGa~~v------g---~eeLi~~ik~~~~~fd~~iat~ 117 (230)
T PRK05424 83 AEEAKAAGADIV------G---GEDLIEKIKGGWLDFDVVIATP 117 (230)
T ss_pred HHHHHHcCCCEe------C---HHHHHHHHhcCCCcCCEEEECH
Confidence 466788998765 3 6676766554434556676653
No 240
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.41 E-value=1.4e+02 Score=25.46 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCC
Q 030178 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVD 93 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~ 93 (182)
-+.+++.+++.|-+++|.+..-. .-|+.--+.-....+..++|.+-.+.+..+
T Consensus 98 GE~VVkacienG~~~vDISGEP~--f~E~mq~kYhd~A~ekGVYIVsaCGfDSIP 150 (423)
T KOG2733|consen 98 GEPVVKACIENGTHHVDISGEPQ--FMERMQLKYHDLAKEKGVYIVSACGFDSIP 150 (423)
T ss_pred CcHHHHHHHHcCCceeccCCCHH--HHHHHHHHHHHHHHhcCeEEEeecccCCCC
Confidence 34789999999999999774221 344444333333456789988888766543
No 241
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=26.39 E-value=3.1e+02 Score=21.33 Aligned_cols=107 Identities=17% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCc--CC----CCCCCCCCHHHHHHHHHHH
Q 030178 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGI--VD----GKYGYHGDPAYVRAACEAS 112 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~--~~----~~~~~~~~~~~i~~~~~~s 112 (182)
..+-+..|-.+|.+.++.+.-|+ ..-+.+.++-. +-...++-.-... ++ +..........+|+++++.
T Consensus 18 l~~r~~~a~~~gf~~vev~~p~~--e~a~~~~~~~~----~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~a 91 (264)
T KOG4518|consen 18 LLQRYGAAASAGFKLVEVSIPYT--EPAEKLREAAD----EYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTA 91 (264)
T ss_pred HHHHHHHHHhCCceEEEecCCCC--ChHHHHHHhhh----cchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHH
Confidence 45566788899999999998887 43333443322 2222222211111 00 1112335677889999888
Q ss_pred H---HHhCCCccceEEeecCCCCCCH--------HHHHHHHHHHhHcCccc
Q 030178 113 L---KRLDVDCIDLYYQHRIDTQTPI--------EVTVISLSLLPSFVKLK 152 (182)
Q Consensus 113 L---~~Lg~~~lDl~~lh~~d~~~~~--------~~~~~al~~l~~~G~ir 152 (182)
. +.||+.+|.+.-= .|-...+. +..--|-+.|++..+|.
T Consensus 92 i~yAkalgC~rIHlmAG-~~k~g~d~~~~~~ty~eNlr~AA~~l~~~klig 141 (264)
T KOG4518|consen 92 IEYAKALGCCRIHLMAG-IPKSGDDLENAHQTYSENLRFAAEKLKEHKLIG 141 (264)
T ss_pred HHHHHHhCCceEEEecc-CCCCCchHHHHHHHHHHHHHHHHHHhhhhceee
Confidence 7 5788877775322 22222222 22334556666666553
No 242
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=26.32 E-value=2.5e+02 Score=20.08 Aligned_cols=55 Identities=20% Similarity=0.023 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccch
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVAL 163 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~ 163 (182)
.+.+.+...+.+..+ -+.+. .+.++ -|...++.+..+.|..|++.|.-+ +|+..-
T Consensus 79 v~~~~l~~~l~~~~~-~~~~~--~v~i~-aD~~v~y~~vv~vm~~l~~aG~~~-----v~L~t~ 133 (137)
T COG0848 79 VSLEELEAALAALAK-GKKNP--RVVIR-ADKNVKYGTVVKVMDLLKEAGFKK-----VGLVTE 133 (137)
T ss_pred ccHHHHHHHHHHHhc-CCCCc--eEEEE-eCCCCCHHHHHHHHHHHHHcCCce-----EEEEec
Confidence 556666666665554 22222 34444 466778999999999999999988 887653
No 243
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.31 E-value=3.1e+02 Score=21.16 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCC
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGI 89 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~ 89 (182)
.+.+++.++.+..++.|++.+..+-... ...+.+.+.-++.++--+-..|+...
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccCH
Confidence 3678999999999999999999884333 45666655444455433445566543
No 244
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=26.29 E-value=2.2e+02 Score=21.65 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCC
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYG 61 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg 61 (182)
.++.|. ++|+.|+++| +||.....+
T Consensus 156 LTdrQ~-~vL~~A~~~G--YFd~PR~~~ 180 (215)
T COG3413 156 LTDRQL-EVLRLAYKMG--YFDYPRRVS 180 (215)
T ss_pred CCHHHH-HHHHHHHHcC--CCCCCccCC
Confidence 344444 7777888888 466555444
No 245
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=26.28 E-value=2.4e+02 Score=21.57 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 030178 41 ALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDC 120 (182)
Q Consensus 41 ~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~ 120 (182)
+++...++-|-+..|-.-..| . +-+.|+.. ++ +. =.| ...+.+.|.+++++.+.-.+-|
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG--~----LL~~L~~~-k~-v~---g~G---------vEid~~~v~~cv~rGv~Viq~D- 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG--E----LLAYLKDE-KQ-VD---GYG---------VEIDPDNVAACVARGVSVIQGD- 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch--H----HHHHHHHh-cC-Ce---EEE---------EecCHHHHHHHHHcCCCEEECC-
Confidence 567788899999999775444 3 33445441 11 10 011 2256677777766655444422
Q ss_pred cceEEeecCCCCCC----------HHHHHHHHHHHhHcCccccccceeeccchhHHHHHH
Q 030178 121 IDLYYQHRIDTQTP----------IEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLL 170 (182)
Q Consensus 121 lDl~~lh~~d~~~~----------~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~ 170 (182)
+|--+-++||...+ +....+.|+++..-|+--- +++.||..+..+.
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~I----VsFPNFg~W~~R~ 119 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAI----VSFPNFGHWRNRL 119 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEE----EEecChHHHHHHH
Confidence 33333344443322 2233455667777676443 8899999877654
No 246
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=26.21 E-value=1.6e+02 Score=20.45 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCC-HHHHHHHHHHHhHcCc
Q 030178 106 RAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTVISLSLLPSFVK 150 (182)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~al~~l~~~G~ 150 (182)
+..+.+.|+.+....+|.+++...+.... ..+....++.|...|.
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi 96 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKGV 96 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCCC
Confidence 45566666666556678888888877544 4567777788888773
No 247
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=26.20 E-value=3.9e+02 Score=25.40 Aligned_cols=72 Identities=11% Similarity=-0.066 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHhCCC--------------------------ccceEEeecCCCCCCH---HHHHHHHHHHhHcCc
Q 030178 100 GDPAYVRAACEASLKRLDVD--------------------------CIDLYYQHRIDTQTPI---EVTVISLSLLPSFVK 150 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~--------------------------~lDl~~lh~~d~~~~~---~~~~~al~~l~~~G~ 150 (182)
....++.+.++..|+.++.. +..++++.-|....|+ ...|..+.++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 45667888888888877642 4667777777665554 478999999999998
Q ss_pred cccccceeeccchhHHHHHHHhcCCCe
Q 030178 151 LKCSILYCGVVALVAKQMLLLFTNIDF 177 (182)
Q Consensus 151 ir~~~~~iGvs~~~~~~~~~l~~~~~~ 177 (182)
+ +=+.+|+-++.+.+...+.+
T Consensus 750 --a----iiLTSHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 750 --A----IILTSHSMEEAEALCTRTAI 770 (885)
T ss_pred --E----EEEEcCCHHHHHHHhhhhhe
Confidence 4 77889999999888765443
No 248
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=26.20 E-value=1.5e+02 Score=28.02 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=45.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCeee----ccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCC
Q 030178 32 PPKPEPDMIALIRHAINSGITFLD----TSDIYGPHTNEILLGKAFKGGFRERAELATKFGI 89 (182)
Q Consensus 32 ~~~~~~~~~~~l~~a~~~G~~~~D----ta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~ 89 (182)
..+|++..++.|+.+++.|++-+- -+..|. ..|..+|+..++..-..+-+++|+.+
T Consensus 163 kk~De~alr~~Lk~l~~~G~~siav~l~HSyt~P--~HE~~v~kiA~e~GF~~vSLSs~l~P 222 (1247)
T KOG1939|consen 163 KKVDEEALRQDLKELYDKGVKSIAVVLLHSYTYP--DHELEVGKIAKEIGFSHVSLSSKLMP 222 (1247)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEeeeeeccccCC--cHHHHHHHHHHHhCccceechhcccc
Confidence 456889999999999999998664 344555 78999999888877788888998865
No 249
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=25.94 E-value=3.1e+02 Score=21.18 Aligned_cols=111 Identities=11% Similarity=0.086 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHHHcCCC--eeeccC-CCCCCcHH-HHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGIT--FLDTSD-IYGPHTNE-ILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~--~~Dta~-~Yg~g~~e-~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 110 (182)
+.....+.++...+.|++ |+|.-+ .|-|+.+. ..+=+++++.. .++++-.|+.... + ...+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~-~~~~lDvHLm~~~----------p---~~~i- 81 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHL-PNTFLDCHLMVSN----------P---EKWV- 81 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcC-CCCCEEEEECCCC----------H---HHHH-
Confidence 456677888999999976 566555 34332111 11224454421 2577788887432 2 2222
Q ss_pred HHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc---chhHHHHHHHh
Q 030178 111 ASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV---ALVAKQMLLLF 172 (182)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs---~~~~~~~~~l~ 172 (182)
+.+...| +|++.+|.-.. ....-++++.+++.|+. +||+ +.+.+++..++
T Consensus 82 ~~~~~~G---ad~itvH~ea~---~~~~~~~l~~ik~~G~~------~gval~p~t~~e~l~~~l 134 (228)
T PTZ00170 82 DDFAKAG---ASQFTFHIEAT---EDDPKAVARKIREAGMK------VGVAIKPKTPVEVLFPLI 134 (228)
T ss_pred HHHHHcC---CCEEEEeccCC---chHHHHHHHHHHHCCCe------EEEEECCCCCHHHHHHHH
Confidence 3333456 67788897432 11245778888888863 6665 34677777666
No 250
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.83 E-value=4.3e+02 Score=22.87 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHHHHcCCCeee----ccCCCCCCc-HHHHHHHhhccC-CCC---CEEEEeccCCCcCCCCCCCCCCHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLD----TSDIYGPHT-NEILLGKAFKGG-FRE---RAELATKFGIGIVDGKYGYHGDPAY 104 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~D----ta~~Yg~g~-~e~~lG~~l~~~-~r~---~~~i~tK~~~~~~~~~~~~~~~~~~ 104 (182)
.+.++..+-++..++.|++.|- +...||... ....+.+.++.. ... .+-+.+ . .+..
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~----~----------~p~~ 249 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLT----S----------HPAW 249 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEe----c----------Chhh
Confidence 3678888888999999987663 223466321 112233434331 111 222221 0 1223
Q ss_pred HHHHHHHHHHHhC--CCccceEEee-------cCCCCCCHHHHHHHHHHHhHc--CccccccceeeccchhHHHHHHHhc
Q 030178 105 VRAACEASLKRLD--VDCIDLYYQH-------RIDTQTPIEVTVISLSLLPSF--VKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 105 i~~~~~~sL~~Lg--~~~lDl~~lh-------~~d~~~~~~~~~~al~~l~~~--G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
+.+.+-+.+.+++ +.++++=+=+ ........++..++++.+++. |..-..-+-+|+.+-+.+.+++.++
T Consensus 250 i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~ 329 (459)
T PRK14338 250 MTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYD 329 (459)
T ss_pred cCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHH
Confidence 3333334444432 2333221111 112223467788888888876 3221111226788888877766655
No 251
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=25.73 E-value=1.8e+02 Score=19.67 Aligned_cols=44 Identities=14% Similarity=-0.024 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCC-HHHHHHHHHHHhHcCcc
Q 030178 106 RAACEASLKRLDVDCIDLYYQHRIDTQTP-IEVTVISLSLLPSFVKL 151 (182)
Q Consensus 106 ~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~-~~~~~~al~~l~~~G~i 151 (182)
+..+++.++.+. ..|.++++..+.... ..+.+..++.+.+.|.-
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~gi~ 86 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKGVS 86 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCCCE
Confidence 455666666665 578999998877544 46777888888887743
No 252
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.63 E-value=87 Score=22.37 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHhHcCcccc
Q 030178 133 TPIEVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 133 ~~~~~~~~al~~l~~~G~ir~ 153 (182)
.+..-+++.|+.|.+.|+|+.
T Consensus 50 i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 50 IGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 446678999999999999987
No 253
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=25.60 E-value=3.8e+02 Score=22.00 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCC---CcHHHH----HH----------Hhhcc-CCCCCEEEEeccCCCcCC--C
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGP---HTNEIL----LG----------KAFKG-GFRERAELATKFGIGIVD--G 94 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~---g~~e~~----lG----------~~l~~-~~r~~~~i~tK~~~~~~~--~ 94 (182)
-++..+++-...+++|-+.++|+. |.. +.+|+. +. ++.|+ ...+...|..-+++..+. +
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 467788888899999999999986 652 223322 11 11122 234445566666654321 1
Q ss_pred C--CCCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 030178 95 K--YGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 95 ~--~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (182)
+ .....+.+.+.+-.+.-++.|+-.-+|++-+...
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETi 156 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETL 156 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeeccc
Confidence 1 1123445555555566666666666998888764
No 254
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=25.55 E-value=1.3e+02 Score=22.51 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLG 70 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG 70 (182)
+++...+.++...+.|++.+|+=.-|.-+.-++.+|
T Consensus 11 ~~~~l~~A~~~~r~~G~~~~d~ytPfPvhgld~alg 46 (173)
T PF11821_consen 11 DPEALLHAARKLRDAGYRIWDVYTPFPVHGLDEALG 46 (173)
T ss_pred CHHHHHHHHHHHHHcCCceeEEeCCCcCcCHHHHhC
Confidence 678899999999999999999766666444455555
No 255
>KOG3344 consensus 40s ribosomal protein s10 [Translation, ribosomal structure and biogenesis]
Probab=25.53 E-value=1.2e+02 Score=21.93 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=39.4
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHhHcCccccc----cceeeccchhHHHHHHHhc
Q 030178 122 DLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCS----ILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 122 Dl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~----~~~iGvs~~~~~~~~~l~~ 173 (182)
|.-+-..|+-..+...+..+|..|+..|.++.. .+|+=+.|-..+-+++-++
T Consensus 26 D~~~~kH~el~vpNL~vikaMQSl~SrgYvkeqfaWrH~Yw~LTneGi~yLR~YLh 81 (150)
T KOG3344|consen 26 DFNLPKHPELEVPNLHVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLREYLH 81 (150)
T ss_pred ccCCccCcccCCccHHHHHHHHHHhhhhhHHhhhhhheeeeeechhHHHHHHHHhc
Confidence 433334444456677899999999999999764 4688888999998888775
No 256
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=25.26 E-value=45 Score=21.80 Aligned_cols=18 Identities=17% Similarity=-0.097 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHcCcccc
Q 030178 136 EVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 136 ~~~~~al~~l~~~G~ir~ 153 (182)
....++|..|+++|+|..
T Consensus 25 ~~~~~il~~L~d~GyI~G 42 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKG 42 (88)
T ss_dssp HHHHHHHHHHHHHTSEE-
T ss_pred HHHHHHHHHHHHCCCccc
Confidence 456789999999999965
No 257
>PRK14865 rnpA ribonuclease P; Provisional
Probab=25.24 E-value=2.3e+02 Score=19.40 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHHHHhCCC
Q 030178 100 GDPAYVRAACEASLKRLDVD 119 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~ 119 (182)
.+.+.+.+++...|++++..
T Consensus 95 ~~~~~l~~~l~~ll~~~~~~ 114 (116)
T PRK14865 95 LDFQQISRELANALERLRKK 114 (116)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 44556666666666655443
No 258
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=25.23 E-value=71 Score=20.53 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHcCcccc
Q 030178 136 EVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 136 ~~~~~al~~l~~~G~ir~ 153 (182)
.+...++++|.++|+|..
T Consensus 34 p~~i~a~~RLheKGLI~~ 51 (77)
T TIGR02647 34 PAAVAAAARLHEKGLTTQ 51 (77)
T ss_pred HHHHHHHHHHHHcCCccC
Confidence 478999999999999965
No 259
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=25.19 E-value=91 Score=28.44 Aligned_cols=39 Identities=31% Similarity=0.228 Sum_probs=30.4
Q ss_pred HHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcccc
Q 030178 112 SLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 112 sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~ 153 (182)
.|+.||++ |++.++++|+- +.+....||++|...|-+..
T Consensus 414 ~Lkalgi~--d~l~F~f~d~P-~~~~l~~AL~~L~~lgald~ 452 (674)
T KOG0922|consen 414 QLKALGIN--DPLRFPFIDPP-PPEALEEALEELYSLGALDD 452 (674)
T ss_pred HHHhcCCC--CcccCCCCCCC-ChHHHHHHHHHHHhcCcccC
Confidence 37888887 99999998764 35567789999988887754
No 260
>PLN02229 alpha-galactosidase
Probab=25.17 E-value=1e+02 Score=26.61 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=33.3
Q ss_pred cccCcceeccccCCCCCCCCCChHHHHHHHHHH-----HHcCCCeeeccCCC
Q 030178 14 LEVSAQGLGCMGMSALYGPPKPEPDMIALIRHA-----INSGITFLDTSDIY 60 (182)
Q Consensus 14 ~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a-----~~~G~~~~Dta~~Y 60 (182)
...|++|..+|-. ++..++++...+..+.. .++|+++|-.-+.+
T Consensus 60 a~tPpmGWnSWn~---~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW 108 (427)
T PLN02229 60 ARTPQMGWNSWNF---FACNINETVIKETADALVSTGLADLGYIHVNIDDCW 108 (427)
T ss_pred cCCCCceEEchhh---hCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCc
Confidence 6779999999965 67777888888888874 67899987444433
No 261
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.02 E-value=3.7e+02 Score=21.67 Aligned_cols=121 Identities=16% Similarity=0.022 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc-CCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG-GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (182)
+.++..+.++.+.+.|++.|+.--.-.+ ..+...=+++++ .+ ++-|..+.... .+.+...+ +-+.|
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~-~~d~~~v~~lr~~~g--~~~l~vD~n~~---------~~~~~A~~-~~~~l 200 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDL-EDDIERIRAIREAAP--DARLRVDANQG---------WTPEEAVE-LLREL 200 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCh-hhHHHHHHHHHHhCC--CCeEEEeCCCC---------cCHHHHHH-HHHHH
Confidence 4566778888899999999987531111 122222234444 33 55555555321 33333222 22334
Q ss_pred HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc--CCCeeee
Q 030178 114 KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT--NIDFFIY 180 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~--~~~~~~~ 180 (182)
+.++ +.++.-|-+. +-++.+.+|++...+.- ..|=+-++...++.+++ .+++++.
T Consensus 201 ~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipI---a~~E~~~~~~~~~~~~~~~~~d~v~~ 257 (316)
T cd03319 201 AELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPI---MADESCFSAADAARLAGGGAYDGINI 257 (316)
T ss_pred HhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCE---EEeCCCCCHHHHHHHHhcCCCCEEEE
Confidence 4444 4444555332 23666777777666651 24556778888888877 4566543
No 262
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=24.97 E-value=4.9e+02 Score=23.07 Aligned_cols=132 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHcCCCee---eccCCCCCCcHHHHHHHhhcc-CCCCCEEEEeccCCCcCCCCCCCCC
Q 030178 25 GMSALYGPPKPEPDMIALIRHAINSGITFL---DTSDIYGPHTNEILLGKAFKG-GFRERAELATKFGIGIVDGKYGYHG 100 (182)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~---Dta~~Yg~g~~e~~lG~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~ 100 (182)
.|+...+...+.+...++++.|.+.|.+.| ||...--|....+++....+. ...+++-|....+......
T Consensus 227 ~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlA------ 300 (503)
T PLN03228 227 QFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLA------ 300 (503)
T ss_pred EeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChH------
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeec-cchhHHHHHHHhc
Q 030178 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGV-VALVAKQMLLLFT 173 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGv-s~~~~~~~~~l~~ 173 (182)
+-.++... .-|.+++|. .+.-.........+-+-+..|+..+.+.. .|+ .+.+.+.+.++.+
T Consensus 301 ----vANslaAi--~aGa~~Vd~-Tv~GiGERaGNa~lEevv~~L~~~~~~~~----~g~~t~iDl~~L~~ls~ 363 (503)
T PLN03228 301 ----TANTIAGI--CAGARQVEV-TINGIGERSGNASLEEVVMALKCRGAYLM----NGVYTGIDTRQIMATSK 363 (503)
T ss_pred ----HHHHHHHH--HhCCCEEEE-eccccccccCCccHHHHHHHHHhcccccc----cCCCCCcCHHHHHHHHH
No 263
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=24.81 E-value=4.4e+02 Score=22.54 Aligned_cols=76 Identities=11% Similarity=-0.119 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccc---h-hHHHHHHHhcC-
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVA---L-VAKQMLLLFTN- 174 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~---~-~~~~~~~l~~~- 174 (182)
.+.+.+.+.+++.+.-... ..+-+.+--..+-.-..+..+.++.+++.|.--+ ++.+| + +.+.++++.+.
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~ta----I~~TnG~~l~~~e~~~~L~~~g 128 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIH----LGYTSGKGFDDPEIAEFLIDNG 128 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEE----EeCCCCcccCCHHHHHHHHHcC
Confidence 5677888888887765532 3455566655333334678888888888886554 66344 3 66777777653
Q ss_pred CCeeee
Q 030178 175 IDFFIY 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
++.+.+
T Consensus 129 ld~v~i 134 (404)
T TIGR03278 129 VREVSF 134 (404)
T ss_pred CCEEEE
Confidence 555443
No 264
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=24.76 E-value=3.7e+02 Score=21.55 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=59.6
Q ss_pred CCCCChHHHHHHHHHHHH--cCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHH
Q 030178 31 GPPKPEPDMIALIRHAIN--SGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAA 108 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~--~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 108 (182)
....++++..++++.|.+ .|+.-+-..+.|- +...+.|+......+-++|=++.+.. ..+.+.-...
T Consensus 20 ~p~~T~~~I~~lc~eA~~~~~~faaVcV~P~~v-----~~a~~~L~~~~~~~vkv~tVigFP~G------~~~t~~K~~E 88 (257)
T PRK05283 20 NDDDTDEKVIALCHQAKTPVGNTAAICIYPRFI-----PIARKTLREQGTPEIRIATVTNFPHG------NDDIDIALAE 88 (257)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeEEEECHHHH-----HHHHHHhcccCCCCCeEEEEecCCCC------CCcHHHHHHH
Confidence 345688999999999999 5877777665443 34555554311114677777765442 2333444444
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhH
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPS 147 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~ 147 (182)
.+..++ .|.+-+|+++=-..-..-+++.+.+.+.++++
T Consensus 89 a~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~ 126 (257)
T PRK05283 89 TRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKE 126 (257)
T ss_pred HHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHH
Confidence 555555 48899997653222222234444444444444
No 265
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.70 E-value=2.8e+02 Score=21.31 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCC
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF 77 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~ 77 (182)
.+.+++.++.+..++.|++.+..+-.-. ...+.+.+..++.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~--~a~~~i~~l~~~~~ 58 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTP--VALDAIRLLRKEVP 58 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCc--cHHHHHHHHHHHCC
Confidence 3678899999999999999999775333 45566655554443
No 266
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.57 E-value=3.4e+02 Score=21.11 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=23.6
Q ss_pred cceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 18 ~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
+||+-|..+ ......+.++.+-+.|++.++...
T Consensus 2 ~lg~~t~~~--------~~~~l~~~l~~~~~~G~~~vEl~~ 34 (275)
T PRK09856 2 KTGMFTCGH--------QRLPIEHAFRDASELGYDGIEIWG 34 (275)
T ss_pred ceeeeehhh--------eeCCHHHHHHHHHHcCCCEEEEcc
Confidence 456666554 223477899999999999999753
No 267
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.52 E-value=3.2e+02 Score=20.83 Aligned_cols=42 Identities=10% Similarity=-0.049 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCC
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF 77 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~ 77 (182)
.+.+++.++++.+++.|++.+.....-. ...+.+....++.+
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~--~~~~~i~~l~~~~~ 60 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSP--DPFDSIAALVKALG 60 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCc--cHHHHHHHHHHHcC
Confidence 3678999999999999999999774332 45556655554433
No 268
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.48 E-value=95 Score=22.74 Aligned_cols=47 Identities=11% Similarity=-0.032 Sum_probs=34.0
Q ss_pred CccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 119 DCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 119 ~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
+.=|++++-..... ..++.++++.+++.| ++- |++++.....+.+..
T Consensus 100 ~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~G-a~v----I~IT~~~~s~La~~a 146 (177)
T cd05006 100 QPGDVLIGISTSGN--SPNVLKALEAAKERG-MKT----IALTGRDGGKLLELA 146 (177)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CEE----EEEeCCCCCchhhhC
Confidence 44577666654333 348999999999999 444 999998777766654
No 269
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=24.37 E-value=5.3e+02 Score=23.30 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCC-------Cc---HHHHHHHhhcc---CCCCCEEEEeccCCCcCCCCCCCCCC
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGP-------HT---NEILLGKAFKG---GFRERAELATKFGIGIVDGKYGYHGD 101 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~-------g~---~e~~lG~~l~~---~~r~~~~i~tK~~~~~~~~~~~~~~~ 101 (182)
+++...++=+..+++|-+.+.|...+.. |. .+++...+++- .....++|+.-+++....++ ....+
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~-~~~~~ 119 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGP-LGDIS 119 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCC-CCCCC
Confidence 5577888888889999999998875432 11 23333333321 11134778888887654321 12256
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecC
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~ 129 (182)
.+.+++..+.-.+.|.-.-+|++.+.-.
T Consensus 120 ~~~~~~~~~~~~~~l~~~gvD~l~~ET~ 147 (612)
T PRK08645 120 LEEIRREFREQIDALLEEGVDGLLLETF 147 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 7888888777777775556888888753
No 270
>PRK14866 hypothetical protein; Provisional
Probab=24.25 E-value=4.3e+02 Score=23.07 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhCCCc
Q 030178 104 YVRAACEASLKRLDVDC 120 (182)
Q Consensus 104 ~i~~~~~~sL~~Lg~~~ 120 (182)
..++.+.+.|+.+|++.
T Consensus 251 ~~r~~i~~~l~~lgl~v 267 (451)
T PRK14866 251 GDRPRLEALLEELGLRV 267 (451)
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 35555666666666543
No 271
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=24.24 E-value=4.2e+02 Score=22.05 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=77.8
Q ss_pred CcceeccccCCCCCC----CCCChHHHHHHHHHHHHcC---CCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCC
Q 030178 17 SAQGLGCMGMSALYG----PPKPEPDMIALIRHAINSG---ITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGI 89 (182)
Q Consensus 17 s~l~lGt~~~~~~~~----~~~~~~~~~~~l~~a~~~G---~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~ 89 (182)
..+|--|.++-. |+ ...+.++..+++....+.- +-.+|..+..+ .-...+-+.+. ...-+++.+|...
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~~--~~piilV~NK~DL 102 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFVG--GNPVLLVGNKIDL 102 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHhC--CCCEEEEEEchhh
Confidence 345555555422 33 2235666767666554332 23457544333 11122223332 3455789999875
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHH
Q 030178 90 GIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQML 169 (182)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~ 169 (182)
.. .....+.+.+-+++..+..|....+++.+..- ....+++.++.+.++.+.+.+- .+|.+|..-+.+-
T Consensus 103 l~------k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~----~vG~~nvGKStli 171 (360)
T TIGR03597 103 LP------KSVNLSKIKEWMKKRAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVY----VVGVTNVGKSSLI 171 (360)
T ss_pred CC------CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEE----EECCCCCCHHHHH
Confidence 32 12345666666666677777644466655543 3455888888888876544444 6999999976663
Q ss_pred H
Q 030178 170 L 170 (182)
Q Consensus 170 ~ 170 (182)
.
T Consensus 172 N 172 (360)
T TIGR03597 172 N 172 (360)
T ss_pred H
Confidence 3
No 272
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=24.22 E-value=1.9e+02 Score=23.36 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHh---CCCccceE
Q 030178 100 GDPAYVRAACEASLKRL---DVDCIDLY 124 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~L---g~~~lDl~ 124 (182)
.+++.++......++.+ |+.|+|+.
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~ 93 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIR 93 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 34556665555555443 56666654
No 273
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=24.13 E-value=38 Score=25.69 Aligned_cols=19 Identities=32% Similarity=0.167 Sum_probs=12.3
Q ss_pred HHHHHhCCCccceEEeecC
Q 030178 111 ASLKRLDVDCIDLYYQHRI 129 (182)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~ 129 (182)
+.|+.||+||||=--+-.|
T Consensus 87 qiLealgVD~IDESEVLTp 105 (208)
T PF01680_consen 87 QILEALGVDYIDESEVLTP 105 (208)
T ss_dssp HHHHHTT-SEEEEETTS--
T ss_pred hhHHHhCCceecccccccc
Confidence 6789999999996444344
No 274
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=24.09 E-value=5.1e+02 Score=23.01 Aligned_cols=107 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeeecc-CCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHH---HHH
Q 030178 31 GPPKPEPDMIALIRHAINSGITFLDTS-DIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPA---YVR 106 (182)
Q Consensus 31 ~~~~~~~~~~~~l~~a~~~G~~~~Dta-~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~---~i~ 106 (182)
+...+.++..++.+...+.|++.|+.. +..+ ..+.-.=+.+.+...++..|+.-.-... ++ .+.
T Consensus 17 g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s--~~d~~~v~~i~~~~~~~~~i~~~~r~~r----------~~~~~~~d 84 (526)
T TIGR00977 17 GVSFSLEDKIRIAERLDDLGIHYIEGGWPGAN--PKDVQFFWQLKEMNFKNAKIVAFCSTRR----------PHKKVEED 84 (526)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--hHHHHHHHHHHHhCCCCcEEEEEeeecC----------CCCCCchH
Q ss_pred HHHHHHHHHhCCCccceEEeecC---------CCCCCHHHHHHHHHHHhHcCc
Q 030178 107 AACEASLKRLDVDCIDLYYQHRI---------DTQTPIEVTVISLSLLPSFVK 150 (182)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~~---------d~~~~~~~~~~al~~l~~~G~ 150 (182)
+.++..+.. +.+.+.++.--++ +...-++.+.+.++.+++.|+
T Consensus 85 ~~~ea~~~~-~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~ 136 (526)
T TIGR00977 85 KMLQALIKA-ETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGD 136 (526)
T ss_pred HHHHHHhcC-CCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
No 275
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.77 E-value=4.4e+02 Score=22.14 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
..+.++..++++...+.|+..++.+.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~ 47 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF 47 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 45678899999999999999999863
No 276
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=23.69 E-value=3.3e+02 Score=20.58 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=58.5
Q ss_pred cCCCeeeccCCCCCCc-HHHH---HHHhhcc-CC-CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCC---
Q 030178 49 SGITFLDTSDIYGPHT-NEIL---LGKAFKG-GF-RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVD--- 119 (182)
Q Consensus 49 ~G~~~~Dta~~Yg~g~-~e~~---lG~~l~~-~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~--- 119 (182)
..++++||........ .++. +.+++.. .+ .+-+.++.+.. + .+ +.-+..++...+.+|-+
T Consensus 49 ~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r---------~t-~~~~~~l~~l~~~FG~~~~k 117 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-R---------FT-EEDREVLELLQEIFGEEIWK 117 (212)
T ss_dssp EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B----------S-HHHHHHHHHHHHHHCGGGGG
T ss_pred eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-c---------ch-HHHHHHHHHHHHHccHHHHh
Confidence 4678999988665333 3433 3333332 23 34466677766 2 22 33455566666677753
Q ss_pred ccceEEeecCCCC-CCHHHHHH-----HHHHHhHcCccccccceeeccch------hHHHHHHHhcC
Q 030178 120 CIDLYYQHRIDTQ-TPIEVTVI-----SLSLLPSFVKLKCSILYCGVVAL------VAKQMLLLFTN 174 (182)
Q Consensus 120 ~lDl~~lh~~d~~-~~~~~~~~-----al~~l~~~G~ir~~~~~iGvs~~------~~~~~~~l~~~ 174 (182)
+.=+++-|+-... ..+++.++ +|.+|.++-.-| |+-+.|. ...|+.+|++.
T Consensus 118 ~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R----~~~f~n~~~~~~~~~~qv~~Ll~~ 180 (212)
T PF04548_consen 118 HTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR----YHVFNNKTKDKEKDESQVSELLEK 180 (212)
T ss_dssp GEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC----EEECCTTHHHHHHHHHHHHHHHHH
T ss_pred HhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE----EEEEeccccchhhhHHHHHHHHHH
Confidence 4445555654222 22444333 577777655556 5778777 34566666653
No 277
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.66 E-value=1.7e+02 Score=22.86 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCc----HHHHHHHhhccCCCCCEEEEeccC
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHT----NEILLGKAFKGGFRERAELATKFG 88 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~----~e~~lG~~l~~~~r~~~~i~tK~~ 88 (182)
+.....+.|+.|++.|.+.|-.+....... ..+.+.++++...+..++|..-.+
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAG 144 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSAS 144 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecC
Confidence 456788999999999999999886544221 145566666663344555544444
No 278
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=23.60 E-value=3.8e+02 Score=21.35 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=17.9
Q ss_pred CCChHHHHHHHHHHHHcCCCeeecc
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
..+.++..++++.+.+.|++.+.-+
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~t 63 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKIT 63 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3466777788888878888777643
No 279
>PRK03739 2-isopropylmalate synthase; Validated
Probab=23.56 E-value=5.4e+02 Score=23.05 Aligned_cols=67 Identities=4% Similarity=-0.016 Sum_probs=39.9
Q ss_pred cceecCCCCcccCcceeccccC-CCC-CCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHH-HHHHHh
Q 030178 5 RRMKLGSQGLEVSAQGLGCMGM-SAL-YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNE-ILLGKA 72 (182)
Q Consensus 5 ~~~~lg~~g~~vs~l~lGt~~~-~~~-~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e-~~lG~~ 72 (182)
+-++-+++-+.-+++.+-|-.- |.. .|..++.++..++.+...+.|++.|+.+ .-.-+..| +.+...
T Consensus 18 ~~~~~~~~~~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~G-fP~~s~~e~e~v~~i 87 (552)
T PRK03739 18 PDRTWPSKTITKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVG-FPSASQTDFDFVREL 87 (552)
T ss_pred CCCCCCCcccCCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEE-CCCcChHHHHHHHHH
Confidence 3344444445555555554211 111 3445688999999999999999999987 32223455 444333
No 280
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.53 E-value=5.6e+02 Score=23.22 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
+++-....++.|.++|+..|-....-. .-+.+-.+++........+..-+.....+. ++.+.+.+.+++ +.
T Consensus 95 pddvv~~~v~~a~~~Gid~~rifd~ln---d~~~~~~ai~~ak~~G~~~~~~i~yt~~p~-----~~~~~~~~~a~~-l~ 165 (593)
T PRK14040 95 ADDVVERFVERAVKNGMDVFRVFDAMN---DPRNLETALKAVRKVGAHAQGTLSYTTSPV-----HTLQTWVDLAKQ-LE 165 (593)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeeeCC---cHHHHHHHHHHHHHcCCeEEEEEEEeeCCc-----cCHHHHHHHHHH-HH
Q ss_pred HhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchh
Q 030178 115 RLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALV 164 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~ 164 (182)
.+| +|.+.+-...-...+.++.+.+..+++.=.+. ||+=.|+
T Consensus 166 ~~G---ad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~p-----i~~H~Hn 207 (593)
T PRK14040 166 DMG---VDSLCIKDMAGLLKPYAAYELVSRIKKRVDVP-----LHLHCHA 207 (593)
T ss_pred HcC---CCEEEECCCCCCcCHHHHHHHHHHHHHhcCCe-----EEEEECC
No 281
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.51 E-value=3e+02 Score=22.25 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcC---ccccccceeecc-chhHHHHHHHhc-CCCeee
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFV---KLKCSILYCGVV-ALVAKQMLLLFT-NIDFFI 179 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G---~ir~~~~~iGvs-~~~~~~~~~l~~-~~~~~~ 179 (182)
+++.++.+.. -.|.++|.+.+ +++.-++.+.+++.| .+. +-+| +-+.+.+++..+ .+|+..
T Consensus 192 leea~~a~~a-gaDiI~LDn~~----~e~l~~~v~~l~~~~~~~~~~-----leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 192 LEDALKAAKA-GADIIMLDNMT----PEEIREVIEALKREGLRERVK-----IEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred HHHHHHHHHc-CcCEEEECCCC----HHHHHHHHHHHHhcCcCCCEE-----EEEECCCCHHHHHHHHHcCCCEEE
Confidence 3344444442 37899998864 555666666666644 454 6666 778888888776 366654
No 282
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.48 E-value=3.8e+02 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeccC
Q 030178 33 PKPEPDMIALIRHAINSGITFLDTSD 58 (182)
Q Consensus 33 ~~~~~~~~~~l~~a~~~G~~~~Dta~ 58 (182)
.++.++..++.+..-++|+..|+...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeec
Confidence 45778899999999999999999873
No 283
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.45 E-value=3.9e+02 Score=22.66 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=61.8
Q ss_pred CCCCcccCcceeccccCCCC--------CC----CCCChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCC
Q 030178 10 GSQGLEVSAQGLGCMGMSAL--------YG----PPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF 77 (182)
Q Consensus 10 g~~g~~vs~l~lGt~~~~~~--------~~----~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~ 77 (182)
|.-.-+|-.||||+..-|.. +. ..++.++ +..+..-++|++|+-.+-.-. .-..+++..++...
T Consensus 10 geitgpIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~--Nyk~vL~pll~~~~ 85 (481)
T COG5310 10 GEITGPIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRD--NYKDVLKPLLKGVG 85 (481)
T ss_pred eeccCcEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChh--hHHHHHHHHhhcCC
Confidence 33344666788988765541 11 0112222 566677789999998775332 23456777777755
Q ss_pred CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC
Q 030178 78 RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQ 132 (182)
Q Consensus 78 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~ 132 (182)
-+.++|-..+.. +.-++ .+..+++++=|||-..=-|+.+.
T Consensus 86 gqgf~vnLSvd~-----------~s~Dl----mr~crk~~vLYidTvVEpW~gfy 125 (481)
T COG5310 86 GQGFCVNLSVDT-----------SSLDL----MRLCRKHGVLYIDTVVEPWLGFY 125 (481)
T ss_pred CceEEEEeEecc-----------chhHH----HHHHHHcCeEEEeeeeccccccc
Confidence 566665554432 22233 34456888889998877776443
No 284
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=23.36 E-value=2.7e+02 Score=23.09 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCC-EEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 36 EPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRER-AELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 36 ~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~-~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
.+...++-...+..|.+-=+-|..+| -++..+.+.|+....+. +-|..+ .... .--.+.++++ +
T Consensus 12 ~~l~~~~A~lYY~~gltQ~eIA~~Lg--iSR~~v~rlL~~Ar~~GiV~I~i~-~~~~---------~~~~Le~~L~---~ 76 (321)
T COG2390 12 ERLLARAAWLYYVEGLTQSEIAERLG--ISRATVSRLLAKAREEGIVKISIN-SPVE---------GCLELEQQLK---E 76 (321)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhC--CCHHHHHHHHHHHHHCCeEEEEeC-CCCc---------chHHHHHHHH---H
Confidence 44566666677788999888898888 78888888887733333 446655 2211 1122333333 7
Q ss_pred HhCCCccceEEeecCCCCCCHH----HHHHHHHHHhHcCccccccceeecc
Q 030178 115 RLDVDCIDLYYQHRIDTQTPIE----VTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~~~~~----~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
++|++++.+.-...+++..... ...+.|+++.+.|.+ |||+
T Consensus 77 ~fgL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdv------igV~ 121 (321)
T COG2390 77 RFGLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDV------IGVG 121 (321)
T ss_pred hcCCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCE------EEEe
Confidence 8898877776654444332222 356779999999996 7776
No 285
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.30 E-value=3.7e+02 Score=21.07 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc---CCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 38 DMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG---GFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 38 ~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~---~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
...++++.|-+.|+...=+.. +......+.+-+.++. ..-+.++|.--.|. ..|..+.+-+....+
T Consensus 111 ~~~~~i~~a~~~G~~v~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~----------~~P~~v~~lv~~l~~ 179 (259)
T cd07939 111 QLRRLVGRAKDRGLFVSVGAE-DASRADPDFLIEFAEVAQEAGADRLRFADTVGI----------LDPFTTYELIRRLRA 179 (259)
T ss_pred HHHHHHHHHHHCCCeEEEeec-cCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCC----------CCHHHHHHHHHHHHH
Confidence 345677788888874321111 1111222223333322 34456777666664 557888888888777
Q ss_pred HhCCCccceEEeecCCC
Q 030178 115 RLDVDCIDLYYQHRIDT 131 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~ 131 (182)
.+++ -+-+|.-+.
T Consensus 180 ~~~~----~l~~H~Hn~ 192 (259)
T cd07939 180 ATDL----PLEFHAHND 192 (259)
T ss_pred hcCC----eEEEEecCC
Confidence 7762 256676644
No 286
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.15 E-value=4.3e+02 Score=21.83 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCC
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDI 59 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~ 59 (182)
.+.++..+.++.+.+.|++.|.-...
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G 104 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGG 104 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecC
Confidence 47788999999999999998876643
No 287
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=22.96 E-value=4.1e+02 Score=22.26 Aligned_cols=66 Identities=17% Similarity=0.047 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCc-cceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 100 GDPAYVRAACEASLKRLDVDC-IDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~-lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.+++.+.+-++...+.+.... .++-+=-+|+.-+ .+.|+.|++.|.-|- ++||-+|+.+.++.+-+
T Consensus 69 l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~-----~e~L~~l~~~Gvnri---slGvQS~~d~vL~~l~R 135 (380)
T PRK09057 69 MQPETVAALLDAIARLWPVADDIEITLEANPTSVE-----AGRFRGYRAAGVNRV---SLGVQALNDADLRFLGR 135 (380)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCC-----HHHHHHHHHcCCCEE---EEecccCCHHHHHHcCC
Confidence 556777777777766665432 2333333454322 267777788888775 89999999888876644
No 288
>PLN02522 ATP citrate (pro-S)-lyase
Probab=22.93 E-value=2.3e+02 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=21.6
Q ss_pred CcHHHHHHHhhccCCCCCEEEEeccCCCc
Q 030178 63 HTNEILLGKAFKGGFRERAELATKFGIGI 91 (182)
Q Consensus 63 g~~e~~lG~~l~~~~r~~~~i~tK~~~~~ 91 (182)
+..|+.+-+++++..+.+.+|.-|.+...
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 35677777888775577888888988654
No 289
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=22.92 E-value=3.6e+02 Score=21.64 Aligned_cols=66 Identities=17% Similarity=0.040 Sum_probs=39.4
Q ss_pred HHHHHHcCCCeeeccCCCCC-------------C----cHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHH
Q 030178 43 IRHAINSGITFLDTSDIYGP-------------H----TNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYV 105 (182)
Q Consensus 43 l~~a~~~G~~~~Dta~~Yg~-------------g----~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i 105 (182)
+..-+++|+|+||---.+.. + ..-..+..+|++.|.|-+++.-|-.... ....+.+
T Consensus 39 i~~QL~~GiR~lDiR~~~~~~~~l~~~Hg~~~~~~~~~dvL~~i~~FL~~nP~E~Vil~l~~e~~~-------~~~~~~f 111 (279)
T cd08586 39 IAEQLNAGIRFLDIRLRLIDNNDLAIHHGPFYQGLTFGDVLNECYSFLDANPSETIIMSLKQEGSG-------DGNTDSF 111 (279)
T ss_pred HHHHHhcCCeEEEEEeeecCCCeEEEEccCccccCcHHHHHHHHHHHHHhCCCcEEEEEEEecCCC-------CCchHHH
Confidence 34446789999995544432 1 1223456667667878788888875432 1135566
Q ss_pred HHHHHHHHHH
Q 030178 106 RAACEASLKR 115 (182)
Q Consensus 106 ~~~~~~sL~~ 115 (182)
.+.+++.+..
T Consensus 112 ~~~~~~~~~~ 121 (279)
T cd08586 112 AEIFKEYLDN 121 (279)
T ss_pred HHHHHHHHhc
Confidence 6666655544
No 290
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.90 E-value=3.8e+02 Score=21.07 Aligned_cols=26 Identities=12% Similarity=-0.097 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHc-CccccccceeeccchhHH
Q 030178 137 VTVISLSLLPSF-VKLKCSILYCGVVALVAK 166 (182)
Q Consensus 137 ~~~~al~~l~~~-G~ir~~~~~iGvs~~~~~ 166 (182)
+.++.++.+++- |.=- .+|+||.+.-
T Consensus 186 ~~l~~i~~~~~~~g~Pi----l~G~Snksf~ 212 (258)
T cd00423 186 ELLRRLDAFRELPGLPL----LLGVSRKSFL 212 (258)
T ss_pred HHHHHHHHHHhcCCCcE----EEEeccchhh
Confidence 566677777765 5333 3999987653
No 291
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=22.88 E-value=1.4e+02 Score=25.98 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
.+...+.+.+.|++||++ .|.+. .+........+.+.+++|.++|.+-
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY 116 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIY 116 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 456778889999999986 67432 1111123567889999999999983
No 292
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=22.87 E-value=2.7e+02 Score=24.55 Aligned_cols=91 Identities=11% Similarity=0.008 Sum_probs=61.3
Q ss_pred CcHHHHHHHhhccC------CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHH
Q 030178 63 HTNEILLGKAFKGG------FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIE 136 (182)
Q Consensus 63 g~~e~~lG~~l~~~------~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~ 136 (182)
.+.|..|++...+. -++...+++=++. -+..+-+.+++..+.||+ |.. .-.+
T Consensus 229 ~p~e~~IA~~vA~lI~~s~~~~DG~tlQ~GiGg-----------ip~AV~~~L~~~mkdlGI--------ht~---f~~g 286 (492)
T TIGR01584 229 DPKELLIAKMANDVIVNSGYFKDGFSFQTGTGG-----------AALAVTRFLKEKMIDHNI--------KAS---FGLG 286 (492)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCEEEccCCH-----------HHHHHHHHHHHHHHhCCC--------ccc---ccCc
Confidence 45777788877772 2677777777763 367788888888888886 431 1124
Q ss_pred HHHHHHHHHhHcCccccccceeeccchhHHHHHHHhcCCCee
Q 030178 137 VTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFTNIDFF 178 (182)
Q Consensus 137 ~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~~~~~~ 178 (182)
-.-+.|-+|.++|+|.+ .+-+.+|.....+-+.++-.+.
T Consensus 287 ~iTd~~vdL~e~G~vt~---~~dV~~F~lGs~~~i~~Np~~~ 325 (492)
T TIGR01584 287 GITKQMVDLHEEGLIDK---LFDVQSFDLGAAESIALNPNHQ 325 (492)
T ss_pred cccHHHHHHHHCCCccc---ceeEEEeecchHHHHhcCCCeE
Confidence 56789999999999997 3557777755554444344444
No 293
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=22.87 E-value=2.2e+02 Score=20.95 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=17.4
Q ss_pred eeccchhHHHHHHHhc-CCCeee
Q 030178 158 CGVVALVAKQMLLLFT-NIDFFI 179 (182)
Q Consensus 158 iGvs~~~~~~~~~l~~-~~~~~~ 179 (182)
||+|.++.++++++.+ .+|++.
T Consensus 98 ig~S~h~~~e~~~a~~~g~dYv~ 120 (180)
T PF02581_consen 98 IGASCHSLEEAREAEELGADYVF 120 (180)
T ss_dssp EEEEESSHHHHHHHHHCTTSEEE
T ss_pred EEeecCcHHHHHHhhhcCCCEEE
Confidence 9999999999988874 466553
No 294
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.84 E-value=1.1e+02 Score=20.66 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=31.7
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 121 IDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 121 lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
=|++++=.-... ..++.++++.+++.| ++- |++++.....+.+..
T Consensus 48 ~d~vi~iS~sG~--t~~~~~~~~~a~~~g-~~v----i~iT~~~~s~la~~a 92 (128)
T cd05014 48 GDVVIAISNSGE--TDELLNLLPHLKRRG-API----IAITGNPNSTLAKLS 92 (128)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCC-CeE----EEEeCCCCCchhhhC
Confidence 355555443222 348899999999998 554 999998887777764
No 295
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.84 E-value=3.9e+02 Score=21.20 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHcCCCee----eccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFL----DTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACE 110 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~----Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 110 (182)
.-+.+.+.++.|-++|+... |+.. |.+..-.+.+.++. +.+-+.+.|.--.|. ..|+.+.+-+.
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~-~~~~~~~~~~~~~~-~~g~~~i~l~DT~G~----------~~P~~v~~lv~ 174 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISG-YSDEELLELLELVN-EIKPDVFYIVDSFGS----------MYPEDIKRIIS 174 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecC-CCHHHHHHHHHHHH-hCCCCEEEEecCCCC----------CCHHHHHHHHH
Confidence 45778888888888887533 3322 33212222222222 234556777666664 56888888888
Q ss_pred HHHHHhCCCccceEEeecCCC
Q 030178 111 ASLKRLDVDCIDLYYQHRIDT 131 (182)
Q Consensus 111 ~sL~~Lg~~~lDl~~lh~~d~ 131 (182)
...+.++. -+ -+-+|.-++
T Consensus 175 ~l~~~~~~-~~-~i~~H~Hn~ 193 (266)
T cd07944 175 LLRSNLDK-DI-KLGFHAHNN 193 (266)
T ss_pred HHHHhcCC-Cc-eEEEEeCCC
Confidence 88777762 11 245676544
No 296
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.81 E-value=4.1e+02 Score=21.47 Aligned_cols=67 Identities=15% Similarity=0.060 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCc-cccccceeeccchhHHHHHHHhc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVK-LKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~-ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.+.+.+++-++...+ +. +-+.+-.--+|+.. ..+.++.|.++++.|. ++- ++|+-+++.+.++.+-+
T Consensus 91 l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l--~~e~l~~L~~l~~~G~~~~i---~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 91 APVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV--PDEVLDLLAEYVERGYEVWV---ELGLQTAHDKTLKKINR 158 (302)
T ss_pred CCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC--CHHHHHHHHHhhhCCceEEE---EEccCcCCHHHHHHHcC
Confidence 456666666665554 21 11222111234322 3466777777777776 432 47877777777765543
No 297
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.80 E-value=4.1e+02 Score=21.42 Aligned_cols=91 Identities=9% Similarity=0.003 Sum_probs=45.8
Q ss_pred CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCC----------HHHHHHHHHHHhH
Q 030178 78 RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP----------IEVTVISLSLLPS 147 (182)
Q Consensus 78 r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~----------~~~~~~al~~l~~ 147 (182)
..++.|..|+....... ...+.+...+ +-+.|+..|++++++ +......+ ....++.+..+++
T Consensus 206 g~d~~i~vris~~~~~~---~g~~~~e~~~-la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 206 GPDFPVGVRLSADDFVP---GGLTLEEAIE-IAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred CCCceEEEEechhccCC---CCCCHHHHHH-HHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 35678888887542110 1134444433 344566778666553 43322111 1123344445544
Q ss_pred cCccccccceeeccchh-HHHHHHHhcC--CCeee
Q 030178 148 FVKLKCSILYCGVVALV-AKQMLLLFTN--IDFFI 179 (182)
Q Consensus 148 ~G~ir~~~~~iGvs~~~-~~~~~~l~~~--~~~~~ 179 (182)
.=.+.- ++.-+.. +++++++++. +|++.
T Consensus 279 ~~~iPV----i~~Ggi~t~~~a~~~l~~g~aD~V~ 309 (327)
T cd02803 279 AVKIPV----IAVGGIRDPEVAEEILAEGKADLVA 309 (327)
T ss_pred HCCCCE----EEeCCCCCHHHHHHHHHCCCCCeee
Confidence 433432 5555554 8888888763 66654
No 298
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=22.73 E-value=25 Score=21.72 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG 75 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~ 75 (182)
.+++...+++..++..|.+.-+.|..|| -+...|..|++.
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~g--i~~~~l~~W~~~ 46 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYG--ISPSTLYNWRKQ 46 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHT--S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccc--cccccccHHHHH
Confidence 3678889999999999999999999999 688899999877
No 299
>PRK03995 hypothetical protein; Provisional
Probab=22.61 E-value=4.1e+02 Score=21.37 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=45.2
Q ss_pred ccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCCC-cHHHHHHHhhccC-CCC-CEEEEeccCCCc
Q 030178 15 EVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPH-TNEILLGKAFKGG-FRE-RAELATKFGIGI 91 (182)
Q Consensus 15 ~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g-~~e~~lG~~l~~~-~r~-~~~i~tK~~~~~ 91 (182)
..+.||||..-+ +.+.-+.+++.++.+=...+.|.-. .++..+-+++.+. .+- .++|--|..
T Consensus 181 ~~~~iGiGGgHY------------apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~--- 245 (267)
T PRK03995 181 FKPAIGIGGGHY------------APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGV--- 245 (267)
T ss_pred CCEEEEECCCCc------------cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCC---
Confidence 445677776543 1233355556666665666666522 3555666777662 222 233333332
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 030178 92 VDGKYGYHGDPAYVRAACEASLKRLDVDC 120 (182)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~ 120 (182)
+...|+.+.+.|+.+|++.
T Consensus 246 ----------k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 246 ----------KSEDRERIIEFLEELGIEV 264 (267)
T ss_pred ----------CHHHHHHHHHHHHHCCCeE
Confidence 4457888888888888753
No 300
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=22.58 E-value=61 Score=25.22 Aligned_cols=28 Identities=11% Similarity=-0.096 Sum_probs=17.9
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 122 DLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 122 Dl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
-|+.+|+. .-+...++.+++.+.+|...
T Consensus 203 ~Ll~~HNl---~~~~~~~~~iR~~I~~~~~~ 230 (238)
T PF01702_consen 203 VLLSIHNL---HHYLRFFKEIREAIRNGTLR 230 (238)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHcCCHH
Confidence 55677764 22456777888888777665
No 301
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=22.42 E-value=4.2e+02 Score=21.45 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCC-------Cc----HHHHHHHhhcc-------CCCCCEEEEeccCCCcCCCC-
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGP-------HT----NEILLGKAFKG-------GFRERAELATKFGIGIVDGK- 95 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~-------g~----~e~~lG~~l~~-------~~r~~~~i~tK~~~~~~~~~- 95 (182)
+++...++-+..+++|-+.+.|.....+ |. .+++...+++- ..+.+.+|+.-+++....-.
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 4566788888889999999998874331 22 23333333321 12325788888887542211
Q ss_pred ---CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeec
Q 030178 96 ---YG--YHGDPAYVRAACEASLKRLDVDCIDLYYQHR 128 (182)
Q Consensus 96 ---~~--~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~ 128 (182)
+. ...+.+.+++....-.+.|--..+|++++.-
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET 161 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACET 161 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Confidence 11 1256788888888888888556699999874
No 302
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.38 E-value=90 Score=19.03 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=14.9
Q ss_pred ChHHHHHHHHHH----HHcCCCeeecc
Q 030178 35 PEPDMIALIRHA----INSGITFLDTS 57 (182)
Q Consensus 35 ~~~~~~~~l~~a----~~~G~~~~Dta 57 (182)
++.++.++++.| ++.|+.++|--
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~nk 41 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYNNK 41 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 345566666554 67799998743
No 303
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=22.31 E-value=2.9e+02 Score=19.51 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=44.1
Q ss_pred CCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCC----CccceEEeecCCCC-CCHHHHHHHHHHHhH
Q 030178 77 FRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDV----DCIDLYYQHRIDTQ-TPIEVTVISLSLLPS 147 (182)
Q Consensus 77 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~----~~lDl~~lh~~d~~-~~~~~~~~al~~l~~ 147 (182)
+|=.+.|+-|++. ...+..|++.+.++.+.+.. ...|++++..+... .++.+.-+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~---------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN---------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc---------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 4556778888763 26688888888888876642 56899999988543 456677777766654
No 304
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=22.22 E-value=1.8e+02 Score=17.13 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCeeeccCCC
Q 030178 40 IALIRHAINSGITFLDTSDIY 60 (182)
Q Consensus 40 ~~~l~~a~~~G~~~~Dta~~Y 60 (182)
.+++..|++.| +||....-
T Consensus 6 ~e~L~~A~~~G--Yfd~PR~~ 24 (53)
T PF04967_consen 6 REILKAAYELG--YFDVPRRI 24 (53)
T ss_pred HHHHHHHHHcC--CCCCCCcC
Confidence 47899999999 47655433
No 305
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=22.01 E-value=5.3e+02 Score=22.42 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCC-CCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFR-ERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (182)
.++-....++.|+++|++.|=.=+.-.+-+|-+.-.++.++..- ....|+--..+. ++.+.-. .+.+-|
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPv---------Ht~e~yv-~~akel 165 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPV---------HTLEYYV-ELAKEL 165 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCc---------ccHHHHH-HHHHHH
Confidence 45778899999999999766433344555677777777777332 223333222221 3333332 344556
Q ss_pred HHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcc
Q 030178 114 KRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKL 151 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~i 151 (182)
..+|+|+|- +....-.....++++-+..+++.=-+
T Consensus 166 ~~~g~DSIc---iKDmaGlltP~~ayelVk~iK~~~~~ 200 (472)
T COG5016 166 LEMGVDSIC---IKDMAGLLTPYEAYELVKAIKKELPV 200 (472)
T ss_pred HHcCCCEEE---eecccccCChHHHHHHHHHHHHhcCC
Confidence 677775543 33332223344555555555544333
No 306
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=22.01 E-value=2.8e+02 Score=20.39 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc-CCCCCEEEEe
Q 030178 39 MIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG-GFRERAELAT 85 (182)
Q Consensus 39 ~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~-~~r~~~~i~t 85 (182)
..-+-...-+.|++.......- +.+..+-++++. ..+.+++|+|
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVG---DDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeC---CCHHHHHHHHHHHHhCCCEEEEC
Confidence 4344444557799887655443 355557777766 4567888888
No 307
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=21.95 E-value=3.2e+02 Score=21.19 Aligned_cols=80 Identities=19% Similarity=0.114 Sum_probs=46.8
Q ss_pred ccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeccCCCCC-CcHHHHHHHhhccCCCCCEEEEeccCCCcCC
Q 030178 15 EVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGP-HTNEILLGKAFKGGFRERAELATKFGIGIVD 93 (182)
Q Consensus 15 ~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~-g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~ 93 (182)
..+.||||..-+ +.+.-+.+++.++.+=...+.|.- .-++.++-+++.+..-+..+|--|..
T Consensus 130 ~~~~ig~GG~HY------------apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l----- 192 (213)
T PF04414_consen 130 CPVAIGFGGGHY------------APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSL----- 192 (213)
T ss_dssp -EEEEEE-S-TT-------------HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-----
T ss_pred cceeEEecCccc------------chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCC-----
Confidence 367888888654 234446667777766666667731 13567788888775333344444433
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCC
Q 030178 94 GKYGYHGDPAYVRAACEASLKRLDVD 119 (182)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~sL~~Lg~~ 119 (182)
+...|+.+++.|+.+|++
T Consensus 193 --------~~~~r~~i~~~l~~~gi~ 210 (213)
T PF04414_consen 193 --------KSEDRRRIEELLEELGIE 210 (213)
T ss_dssp ---------HHHHHHHHHHHHHHT-E
T ss_pred --------CHHHHHHHHHHHHHcCCe
Confidence 556888999999999864
No 308
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=21.94 E-value=3.4e+02 Score=20.13 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhcc
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG 75 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~ 75 (182)
+.+++.++++.+++.|++.+.....-. ...+.+...-+.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~--~~~~~i~~l~~~ 52 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTP--GALEAIRALRKE 52 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHH
Confidence 678899999999999999998776543 344555544433
No 309
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=21.92 E-value=87 Score=20.29 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEe--ec-------C-CCCCCHHHHHHHHHHHhH-cCccc
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQ--HR-------I-DTQTPIEVTVISLSLLPS-FVKLK 152 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~l--h~-------~-d~~~~~~~~~~al~~l~~-~G~ir 152 (182)
.+.+++..++.++.+|++--+.+-+ +. | +...+..++.+++++++. .|..+
T Consensus 10 d~~lK~~a~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF~~~~~n~et~~a~~e~~~~~~~~~ 71 (83)
T TIGR02384 10 DEELKKEAYAVFEELGLTPSTAIRMFLKQVIREQGLPFDLRLPNDETLAAIEEIKELRKLSH 71 (83)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcCCCCHHHHHHHHHHHHhcccCC
Confidence 4568889999999999863332211 11 1 222345688899999887 34444
No 310
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=21.92 E-value=3.7e+02 Score=24.17 Aligned_cols=59 Identities=17% Similarity=-0.046 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHH
Q 030178 101 DPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l 171 (182)
......+++.+.|+.||+. .|-. +-....++...+.+++|+++|+.= +|..+.+++++.
T Consensus 140 ~~~e~~~~I~edL~wLGi~-~d~~----~~qSd~~~~y~~~a~~Li~~G~AY-------~C~cs~eei~~~ 198 (560)
T TIGR00463 140 VKPEAYDMILEDLDWLGVK-GDEV----VYQSDRIEEYYDYCRKLIEMGKAY-------VCDCPPEEFREL 198 (560)
T ss_pred ccHHHHHHHHHHHHHcCCC-CCcc----ccccccHHHHHHHHHHHHHcCCce-------eecCCHHHHHHH
Confidence 3445677788888999987 4522 222345778889999999999984 567777777654
No 311
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.85 E-value=1.4e+02 Score=20.07 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 136 EVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 136 ~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.++.++++.+++.| ++- |.+++.....+.+..
T Consensus 60 ~e~~~~~~~a~~~g-~~v----i~iT~~~~s~la~~a 91 (126)
T cd05008 60 ADTLAALRLAKEKG-AKT----VAITNVVGSTLAREA 91 (126)
T ss_pred HHHHHHHHHHHHcC-CeE----EEEECCCCChHHHhC
Confidence 47999999999999 444 999988777777654
No 312
>PLN02808 alpha-galactosidase
Probab=21.83 E-value=1.1e+02 Score=26.00 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=33.8
Q ss_pred cccCcceeccccCCCCCCCCCChHHHHHHHHH-----HHHcCCCeeeccCCC
Q 030178 14 LEVSAQGLGCMGMSALYGPPKPEPDMIALIRH-----AINSGITFLDTSDIY 60 (182)
Q Consensus 14 ~~vs~l~lGt~~~~~~~~~~~~~~~~~~~l~~-----a~~~G~~~~Dta~~Y 60 (182)
...|++|..+|.. ++..++++...+..+. ..++|+++|..-+.+
T Consensus 29 a~tPpmGWnsW~~---~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W 77 (386)
T PLN02808 29 GLTPQMGWNSWNH---FQCNINETLIKQTADAMVSSGLAALGYKYINLDDCW 77 (386)
T ss_pred cCCCcceEEchHH---HCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCc
Confidence 6788999999965 6777888888888887 467899988554444
No 313
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=21.82 E-value=4.4e+02 Score=24.01 Aligned_cols=59 Identities=12% Similarity=-0.065 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHhCCCccc-eEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHH
Q 030178 101 DPAYVRAACEASLKRLDVDCID-LYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLL 171 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lD-l~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l 171 (182)
......+++.+.|+-||.++=. .+ + ....++...+++++|+++|++ | +|..+.+++++.
T Consensus 99 ~~~e~~d~IleDL~WLGl~wDe~~~--~---QSdr~d~y~e~a~~Li~~G~A-----Y--~c~cs~eei~~~ 158 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSWDVGPT--Y---SSDYMDLMYEKAEELIKKGLA-----Y--CDKTPREEMQKC 158 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCCCCcee--e---ccccHHHHHHHHHHHHHcCCE-----E--EecCCHHHHHHH
Confidence 4556777888999999986321 11 1 123467788999999999999 4 778888888654
No 314
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=21.81 E-value=1.2e+02 Score=18.35 Aligned_cols=20 Identities=10% Similarity=-0.104 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHhHcCcccc
Q 030178 134 PIEVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 134 ~~~~~~~al~~l~~~G~ir~ 153 (182)
+-..+.+.|+.|.++|+|+.
T Consensus 35 ~~~~v~~~L~~L~~~GlV~~ 54 (68)
T PF01978_consen 35 SRSTVYRALKSLEEKGLVER 54 (68)
T ss_dssp SHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHCCCEEE
Confidence 34578999999999999985
No 315
>PRK02399 hypothetical protein; Provisional
Probab=21.75 E-value=2.5e+02 Score=24.17 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcccc
Q 030178 107 AACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 107 ~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~ 153 (182)
.++++..++|.-...|.+.+|.-... =++||+|.++|.+.+
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G------GraME~Li~~G~~~g 239 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG------GRAMEKLIDSGLIAG 239 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc------hHHHHHHHHcCCceE
Confidence 45555555665455799999986543 378999999999954
No 316
>PRK05927 hypothetical protein; Provisional
Probab=21.74 E-value=3.8e+02 Score=22.35 Aligned_cols=120 Identities=10% Similarity=-0.010 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCC--CCEEE-----------EeccCCCcCCCCCCCCC
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFR--ERAEL-----------ATKFGIGIVDGKYGYHG 100 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r--~~~~i-----------~tK~~~~~~~~~~~~~~ 100 (182)
.+.++..+.++.+.+.|++.|-....-.+...-+.+.+.++.+.+ .++.+ +...+ .
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-----------~ 144 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-----------I 144 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-----------C
Confidence 468889999999999999988765444433223345555554222 12221 11111 1
Q ss_pred CHHHHHHHHHHHHHHhCCCccc--------eEEeecCCCCC-CHHHHHHHHHHHhHcCccccccceeeccchhHHHH
Q 030178 101 DPAYVRAACEASLKRLDVDCID--------LYYQHRIDTQT-PIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQM 168 (182)
Q Consensus 101 ~~~~i~~~~~~sL~~Lg~~~lD--------l~~lh~~d~~~-~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~ 168 (182)
.. ++ .-+.|+.-|++++- =.+-|...+.. ..++-++.++.+++.|+=-+...-+|+-.-..+.+
T Consensus 145 ~~---~e-~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri 217 (350)
T PRK05927 145 ST---EQ-ALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDIL 217 (350)
T ss_pred CH---HH-HHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHH
Confidence 11 11 11223334443222 22223333333 35777899999999998877666788855444444
No 317
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.64 E-value=2.8e+02 Score=19.15 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCC
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTP 134 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~ 134 (182)
.+.+.+.+.+++.|+..+.+.-++-.+-.++...+
T Consensus 12 ~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~ 46 (121)
T PF01890_consen 12 APAEEIEEAIEQALAEAGLSPRSIAAIASIDIKAD 46 (121)
T ss_dssp --HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS-
T ss_pred CCHHHHHHHHHHHHHHcCCChhhccEEEeccccCC
Confidence 67899999999999999998888888888876544
No 318
>PLN02907 glutamate-tRNA ligase
Probab=21.61 E-value=3.7e+02 Score=25.04 Aligned_cols=61 Identities=15% Similarity=-0.038 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.......+++.+.|+-||+++ |-.. + ....++...++.++|+++|+. | +|..+.+++++..
T Consensus 259 r~~~e~~~~I~~dl~wLG~~~-d~~~-~---qS~r~~~y~~~a~~Li~~G~a-----Y--~~~~~~~~~~~~~ 319 (722)
T PLN02907 259 KESDEFVENILKDIETLGIKY-DAVT-Y---TSDYFPQLMEMAEKLIKEGKA-----Y--VDDTPREQMRKER 319 (722)
T ss_pred cCChHHHHHHHHHHHHcCCCC-CCcc-c---ccccHHHHHHHHHHHHHcCCe-----e--ecCCCHHHHHHHH
Confidence 345567788999999999875 4211 1 134467788999999999998 4 3777777776553
No 319
>PRK09206 pyruvate kinase; Provisional
Probab=21.60 E-value=5.6e+02 Score=22.51 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLK 114 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 114 (182)
++.+. +.++.++++|++++-.+=.=...+ =+.+.+.++....++..|..|+-. ++.+. .+++.++
T Consensus 171 tekD~-~di~f~~~~~vD~ia~SFVr~~~D-v~~~r~~l~~~~~~~~~iiaKIEt------------~eav~-nldeIl~ 235 (470)
T PRK09206 171 AEKDK-QDLIFGCEQGVDFVAASFIRKRSD-VLEIREHLKAHGGENIQIISKIEN------------QEGLN-NFDEILE 235 (470)
T ss_pred CHHHH-HHHHHHHHcCCCEEEEcCCCCHHH-HHHHHHHHHHcCCCCceEEEEECC------------HHHHH-hHHHHHH
Confidence 55555 447999999999998774433111 233566665533457889999853 22332 4555554
Q ss_pred HhCCCccceEEeecCCCC--CCHHHHHHHH----HHHhHcCcc
Q 030178 115 RLDVDCIDLYYQHRIDTQ--TPIEVTVISL----SLLPSFVKL 151 (182)
Q Consensus 115 ~Lg~~~lDl~~lh~~d~~--~~~~~~~~al----~~l~~~G~i 151 (182)
. .|-+++-+-|=. .+.++..... +.+++.|+-
T Consensus 236 ~-----~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkp 273 (470)
T PRK09206 236 A-----SDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKV 273 (470)
T ss_pred h-----CCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCC
Confidence 4 888888875432 3344444333 333455543
No 320
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.58 E-value=1.8e+02 Score=21.92 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=33.7
Q ss_pred ccceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 120 CIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 120 ~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.=|++++-..... -.++.++++.+++.|. +- |++++++...+..+.
T Consensus 111 ~~Dv~i~iS~sG~--t~~~~~~~~~ak~~g~-~i----I~IT~~~~s~l~~l~ 156 (197)
T PRK13936 111 PGDVLLAISTSGN--SANVIQAIQAAHEREM-HV----VALTGRDGGKMASLL 156 (197)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCC-eE----EEEECCCCChhhhhh
Confidence 3477776654433 3478999999999994 43 999998877777763
No 321
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=21.57 E-value=4.8e+02 Score=21.70 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHcCCCeeecc
Q 030178 34 KPEPDMIALIRHAINSGITFLDTS 57 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta 57 (182)
.+.++...+++.+++.|++=|=-+
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT 66 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT 66 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe
Confidence 367889999999999999887644
No 322
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=21.49 E-value=4.4e+02 Score=21.28 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHc--CCCeeeccCCCCCCcHHHHHHHhhccCC-CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHH
Q 030178 35 PEPDMIALIRHAINS--GITFLDTSDIYGPHTNEILLGKAFKGGF-RERAELATKFGIGIVDGKYGYHGDPAYVRAACEA 111 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~--G~~~~Dta~~Yg~g~~e~~lG~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 111 (182)
+-+.++.+.+.++.+ |+.+.-. .|..=.+++.+-+++.... ...+++.|-+. ..+++.+++
T Consensus 14 tGeTAe~v~~A~l~QF~~~~~~~~--~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~--------------~elr~~l~~ 77 (269)
T PRK05339 14 TGETAETVGRAALSQFPNVEFEEH--RYPFVRTEEKADEVLEEINAERPIVFYTLVD--------------PELREILEE 77 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCCeeEE--EeCCcCCHHHHHHHHHHHHhcCCEEEEeCCC--------------HHHHHHHHH
Confidence 346677777777766 4443211 2221135555666666533 44566666553 458888988
Q ss_pred HHHHhCCCccceEE
Q 030178 112 SLKRLDVDCIDLYY 125 (182)
Q Consensus 112 sL~~Lg~~~lDl~~ 125 (182)
..+.+|+.++|++-
T Consensus 78 ~~~~~~i~~vdll~ 91 (269)
T PRK05339 78 RCAEFGIPCIDILG 91 (269)
T ss_pred HHHHcCCCEEeccH
Confidence 99999999999863
No 323
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.42 E-value=3.8e+02 Score=20.57 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=54.8
Q ss_pred ChH-HHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHH-----HHH
Q 030178 35 PEP-DMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYV-----RAA 108 (182)
Q Consensus 35 ~~~-~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i-----~~~ 108 (182)
+.. +..+.++.+++.|.+-+-+.+.|. ....+.+... +..+-+..++.... ...+.- ...
T Consensus 16 ~~~~~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~~-~~~~~~vi~fp~g~--------~~~~~k~~~~~~~~ 81 (236)
T PF01791_consen 16 TGEEDIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAGS-GVKVGLVIGFPFGT--------STTEPKGYDQIVAE 81 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTTS-TSEEEEEESTTTSS--------STHHHHTCEEEHHH
T ss_pred CchhhHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhcc-ccccceEEEeCCCC--------CccccccccchHHH
Confidence 344 789999999999999998888775 2233334331 22455555544322 222222 344
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHh
Q 030178 109 CEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLP 146 (182)
Q Consensus 109 ~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~ 146 (182)
+++. .++|.+-+|++.-..+..........+.+.+++
T Consensus 82 ve~A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~ 118 (236)
T PF01791_consen 82 VEEA-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVV 118 (236)
T ss_dssp HHHH-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHH-HHcCCceeeeeccccccccccHHHHHHHHHHHH
Confidence 5555 467889999888874433323333444444443
No 324
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=21.27 E-value=2.1e+02 Score=21.74 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCcccc
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKC 153 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~ 153 (182)
.+...+.+.+.+++||+. .|.+.-- ......+-+.++.|.++|.+..
T Consensus 67 ~~~~~~~~~~~~~~L~i~-~d~~~~e----s~~~~~~~~~i~~L~~~g~~~~ 113 (212)
T cd00671 67 VEESIKADLETYGRLDVR-FDVWFGE----SSYLGLMGKVVELLEELGLLYE 113 (212)
T ss_pred HHHHHHHHHHHHHHhCCc-Cceecch----hhhhhHHHHHHHHHHHCCCEEE
Confidence 566778889999999997 5764411 1224456777888999998753
No 325
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=21.22 E-value=2.2e+02 Score=21.38 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=26.1
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHhHcCccccccceeecc
Q 030178 121 IDLYYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVV 161 (182)
Q Consensus 121 lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs 161 (182)
-++++++..-......+-++.|..|..+|.+|. ..+|+.
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~--~nLG~~ 116 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRY--LNLGLF 116 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEE--eeeeeE
Confidence 456666644433345577899999999999985 234544
No 326
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=21.19 E-value=1.5e+02 Score=24.11 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCCH-HHHHHHHHHHhHcCcc
Q 030178 102 PAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPI-EVTVISLSLLPSFVKL 151 (182)
Q Consensus 102 ~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~-~~~~~al~~l~~~G~i 151 (182)
.+...+.+.+.+++||++ +|....-... .... +-+.+.+.+|.++|.|
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~-~~~~~~~v~~~f~~L~~~G~i 116 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTC-DPEYYKFTQWLFLKLYEKGLA 116 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccC-CHHHHHHHHHHHHHHHHCCCE
Confidence 466788889999999984 5732111111 1112 3355678899999998
No 327
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.09 E-value=5.1e+02 Score=21.87 Aligned_cols=66 Identities=11% Similarity=-0.051 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee-cCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQH-RIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh-~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
.+++.+++-++...+.++.....=+.+. +|+..+ -+.|+.|++.|.-|- ++||-+|+.+.++.+-+
T Consensus 76 l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~-----~e~l~~l~~~GvnRi---SiGvQS~~d~~L~~lgR 142 (390)
T PRK06582 76 MNPVIVEGIINKISNLAIIDNQTEITLETNPTSFE-----TEKFKAFKLAGINRV---SIGVQSLKEDDLKKLGR 142 (390)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCC-----HHHHHHHHHCCCCEE---EEECCcCCHHHHHHcCC
Confidence 5667777767666665555433223333 444322 377788888898876 89999999988876554
No 328
>PF13730 HTH_36: Helix-turn-helix domain
Probab=20.96 E-value=83 Score=18.00 Aligned_cols=16 Identities=6% Similarity=-0.091 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHcCcc
Q 030178 136 EVTVISLSLLPSFVKL 151 (182)
Q Consensus 136 ~~~~~al~~l~~~G~i 151 (182)
..+.+++.+|++.|+|
T Consensus 40 ~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 40 RTVQRAIKELEEKGLI 55 (55)
T ss_pred HHHHHHHHHHHHCcCC
Confidence 3466778888887765
No 329
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=20.96 E-value=2.6e+02 Score=24.24 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHc-CCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHH
Q 030178 37 PDMIALIRHAINS-GITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKR 115 (182)
Q Consensus 37 ~~~~~~l~~a~~~-G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (182)
--..+++.+..+. |++.+-...... ...+.+-++-+. +.. +..-.+...+.+.+.+++
T Consensus 45 ~v~~Dvl~R~lr~~G~~V~~v~~~tD--~ddki~~~A~~~------------g~~-------~~e~~~~~~~~f~~~~~~ 103 (463)
T PRK00260 45 FVVFDVLRRYLRYLGYKVTYVRNITD--IDDKIIKRANEE------------GES-------IKELTERYIAAFHEDMDA 103 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEeecCCC--CcHHHHHHHHHc------------CCC-------HHHHHHHHHHHHHHHHHH
Confidence 4566777777765 777665444333 233444444322 100 012245567778899999
Q ss_pred hCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 116 LDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 116 Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
||+...|.+ |-......++.+..++|.++|.+-
T Consensus 104 Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 104 LNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred cCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 999777753 322345677888899999999983
No 330
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.95 E-value=96 Score=15.96 Aligned_cols=17 Identities=18% Similarity=0.001 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHcCccc
Q 030178 136 EVTVISLSLLPSFVKLK 152 (182)
Q Consensus 136 ~~~~~al~~l~~~G~ir 152 (182)
.+..+.|.++++.|.|.
T Consensus 2 ~~~L~~L~~l~~~G~Is 18 (31)
T PF09851_consen 2 EDRLEKLKELYDKGEIS 18 (31)
T ss_pred hHHHHHHHHHHHcCCCC
Confidence 35678899999999885
No 331
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=20.93 E-value=3.4e+02 Score=19.71 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=54.1
Q ss_pred HHHHHHHHH-HcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 030178 39 MIALIRHAI-NSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLD 117 (182)
Q Consensus 39 ~~~~l~~a~-~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 117 (182)
-.+++..++ +.|+..+.+.-.-. .|+.+-.|+.+ .-+-+.|++-.+ .+...-..+.+.|+..|
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~t---p~e~v~aA~~~-dv~vIgvSsl~g------------~h~~l~~~lve~lre~G 91 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQT---PEEAVRAAVEE-DVDVIGVSSLDG------------GHLTLVPGLVEALREAG 91 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCC---HHHHHHHHHhc-CCCEEEEEeccc------------hHHHHHHHHHHHHHHhC
Confidence 345666666 66888887776555 68888888755 333344444333 35667778888888999
Q ss_pred CCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 118 VDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 118 ~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
.+.+= +.+-- ..+..+ ..+|++.|.-+
T Consensus 92 ~~~i~-v~~GG---vip~~d----~~~l~~~G~~~ 118 (143)
T COG2185 92 VEDIL-VVVGG---VIPPGD----YQELKEMGVDR 118 (143)
T ss_pred CcceE-EeecC---ccCchh----HHHHHHhCcce
Confidence 86444 12222 122222 55666667666
No 332
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.91 E-value=1.3e+02 Score=24.86 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCC--CccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 103 AYVRAACEASLKRLDV--DCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 103 ~~i~~~~~~sL~~Lg~--~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
+...+.+.+.+++||+ ++-..+ .+........+.+.+.+|.++|.|-
T Consensus 87 ~~~~~~~~~~~~~lgi~~~~~~~~---~T~~~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 87 LRYVDEQEEQFQRLGVWVDWENPY---KTMDPEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHHhCceecCCCCe---ECCCHHHHHHHHHHHHHHHHCCCEe
Confidence 3456777888999997 322222 2211223557889999999999993
No 333
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=20.75 E-value=3.6e+02 Score=19.96 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=46.7
Q ss_pred cHHHHHHHhhccCCCCCEEEEeccCCCcCCCC--CC----CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCCHH
Q 030178 64 TNEILLGKAFKGGFRERAELATKFGIGIVDGK--YG----YHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDT-QTPIE 136 (182)
Q Consensus 64 ~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~--~~----~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~-~~~~~ 136 (182)
..|..+-+.++.....-+++.||+........ .. ...-.+.+++.+.+.+..-++....+|.+..++. ..++.
T Consensus 94 ~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~ 173 (197)
T cd04104 94 SNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFP 173 (197)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChH
Confidence 45555555665544445789999875321110 00 0112345566666666666788899999999864 34455
Q ss_pred HHHHHHHH
Q 030178 137 VTVISLSL 144 (182)
Q Consensus 137 ~~~~al~~ 144 (182)
...++|..
T Consensus 174 ~l~~~~~~ 181 (197)
T cd04104 174 KLRETLLK 181 (197)
T ss_pred HHHHHHHH
Confidence 44454443
No 334
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=20.67 E-value=2e+02 Score=22.29 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=30.4
Q ss_pred EEeecCCCCCCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHhcC-CCee
Q 030178 124 YYQHRIDTQTPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLFTN-IDFF 178 (182)
Q Consensus 124 ~~lh~~d~~~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~~~-~~~~ 178 (182)
.-+|-...+.+ .....++...+++ ||+|+++.+++.++.+. .|.+
T Consensus 83 dGVHlGq~D~~----~~~ar~~~~~~~i------IG~S~h~~eea~~A~~~g~DYv 128 (211)
T COG0352 83 DGVHLGQDDMP----LAEARELLGPGLI------IGLSTHDLEEALEAEELGADYV 128 (211)
T ss_pred CEEEcCCcccc----hHHHHHhcCCCCE------EEeecCCHHHHHHHHhcCCCEE
Confidence 34555444333 4455667777777 99999999999988753 5554
No 335
>PLN02623 pyruvate kinase
Probab=20.63 E-value=6.4e+02 Score=22.86 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHH
Q 030178 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASL 113 (182)
Q Consensus 34 ~~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 113 (182)
.++.+..+ ++.++++|++++-.+-.=.. ..=..+.+.++. ...++.|..|+-. ++.+ +.+++.+
T Consensus 276 lTekD~~d-i~f~~~~~vD~ialSFVr~a-~DV~~~r~~l~~-~~~~~~iiakIEt------------~eaV-eNldeIl 339 (581)
T PLN02623 276 ITEKDWED-IKFGVENKVDFYAVSFVKDA-QVVHELKDYLKS-CNADIHVIVKIES------------ADSI-PNLHSII 339 (581)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEECCCCCH-HHHHHHHHHHHH-cCCcceEEEEECC------------HHHH-HhHHHHH
Confidence 35555545 78999999999977644331 122335666655 3346788888853 3333 3466666
Q ss_pred HHhCCCccceEEeecCCCC--CCHHHHHHH----HHHHhHcCcc
Q 030178 114 KRLDVDCIDLYYQHRIDTQ--TPIEVTVIS----LSLLPSFVKL 151 (182)
Q Consensus 114 ~~Lg~~~lDl~~lh~~d~~--~~~~~~~~a----l~~l~~~G~i 151 (182)
+ .+|.+++-.-|-. .++++...+ ++..++.|+-
T Consensus 340 ~-----g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKp 378 (581)
T PLN02623 340 T-----ASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKP 378 (581)
T ss_pred H-----hCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCC
Confidence 6 4788888865432 233444333 4445667775
No 336
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=20.57 E-value=3.6e+02 Score=19.94 Aligned_cols=77 Identities=10% Similarity=-0.016 Sum_probs=44.8
Q ss_pred HHHHHhhccCC--CCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHH
Q 030178 67 ILLGKAFKGGF--RERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSL 144 (182)
Q Consensus 67 ~~lG~~l~~~~--r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~ 144 (182)
+.+|++|++.. .+.+.++++.- -++..+...+.++.+.. -.+....+..+.....+.++.
T Consensus 35 ~~~a~~L~~~~~~~D~VL~Spa~R----------------a~QTae~v~~~~~~~~~--~~~~~l~p~~d~~~~l~~l~~ 96 (163)
T COG2062 35 ELVAAWLAGQGVEPDLVLVSPAVR----------------ARQTAEIVAEHLGEKKV--EVFEELLPNGDPGTVLDYLEA 96 (163)
T ss_pred HHHHHHHHhcCCCCCEEEeChhHH----------------HHHHHHHHHHhhCcccc--eeccccCCCCCHHHHHHHHHH
Confidence 45888998832 34455444442 45556666666762211 223444556667777788888
Q ss_pred HhHcCccccccceeeccchhHHH
Q 030178 145 LPSFVKLKCSILYCGVVALVAKQ 167 (182)
Q Consensus 145 l~~~G~ir~~~~~iGvs~~~~~~ 167 (182)
+.+ -+.+ +.+..|++.-
T Consensus 97 ~~d--~v~~----vllVgH~P~l 113 (163)
T COG2062 97 LGD--GVGS----VLLVGHNPLL 113 (163)
T ss_pred hcc--cCce----EEEECCCccH
Confidence 877 3554 7777777543
No 337
>PRK12928 lipoyl synthase; Provisional
Probab=20.56 E-value=4.6e+02 Score=21.18 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhHcC--ccccccceeeccchhHHHHHHHhc
Q 030178 133 TPIEVTVISLSLLPSFV--KLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 133 ~~~~~~~~al~~l~~~G--~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
...++.++.++.+++.| ..-...+-+|+ .-+.+++.+.++
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~ 226 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLR 226 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHH
Confidence 45678889999999988 44333555788 556666655544
No 338
>PRK06267 hypothetical protein; Provisional
Probab=20.54 E-value=5e+02 Score=21.53 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHhHcCccccccceeeccchhHHHHHHHh
Q 030178 133 TPIEVTVISLSLLPSFVKLKCSILYCGVVALVAKQMLLLF 172 (182)
Q Consensus 133 ~~~~~~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~~~l~ 172 (182)
.++++..++++.+++.|.--+...-+|+ +.+.+++.+++
T Consensus 150 ~s~ed~~~~l~~ak~aGi~v~~g~IiGl-gEt~ed~~~~l 188 (350)
T PRK06267 150 KPLDKIKEMLLKAKDLGLKTGITIILGL-GETEDDIEKLL 188 (350)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEeC-CCCHHHHHHHH
Confidence 4578889999999999976554455675 44555555443
No 339
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.49 E-value=4.2e+02 Score=20.64 Aligned_cols=36 Identities=6% Similarity=0.058 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHh
Q 030178 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKA 72 (182)
Q Consensus 35 ~~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~ 72 (182)
+.+++.++.+..++.|++.+..+-.-. .+.+.+.+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp--~a~~~i~~l 60 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGD--FAHEVFAEL 60 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC--cHHHHHHHH
Confidence 779999999999999999999876443 466666443
No 340
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=20.41 E-value=2.7e+02 Score=24.22 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCCHHHHHHHHHHHhHcCccc
Q 030178 100 GDPAYVRAACEASLKRLDVDCIDLYYQHRIDTQTPIEVTVISLSLLPSFVKLK 152 (182)
Q Consensus 100 ~~~~~i~~~~~~sL~~Lg~~~lDl~~lh~~d~~~~~~~~~~al~~l~~~G~ir 152 (182)
.+.+...+.+.+.|+.||++ .|-+ .-....+...-+++++|+++|++-
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~-~De~----y~QSer~~~y~~~~e~L~e~G~AY 95 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGIN-WDRT----FRQSDRFDRYDEAAEKLKAAGRLY 95 (445)
T ss_pred cchHHHHHHHHHHHHHcCCC-CCcc----ccHHHHHHHHHHHHHHHHHCCCEE
Confidence 34567788888999999986 4632 111122344567788888998873
No 341
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.34 E-value=1.1e+02 Score=22.62 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=27.9
Q ss_pred ccceEEeecCCCCCCHHHHHHHHHHHhHcC-ccccccceeecc-chhHHHHHHHhc-CCCeee
Q 030178 120 CIDLYYQHRIDTQTPIEVTVISLSLLPSFV-KLKCSILYCGVV-ALVAKQMLLLFT-NIDFFI 179 (182)
Q Consensus 120 ~lDl~~lh~~d~~~~~~~~~~al~~l~~~G-~ir~~~~~iGvs-~~~~~~~~~l~~-~~~~~~ 179 (182)
-+|.++|.++++ +++-+++++++..+ .++ |-+| +.+.+.+.+..+ .+|+..
T Consensus 100 g~d~I~lD~~~~----~~~~~~v~~l~~~~~~v~-----ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 100 GADIIMLDNMSP----EDLKEAVEELRELNPRVK-----IEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp T-SEEEEES-CH----HHHHHHHHHHHHHTTTSE-----EEEESSSSTTTHHHHHHTT-SEEE
T ss_pred CCCEEEecCcCH----HHHHHHHHHHhhcCCcEE-----EEEECCCCHHHHHHHHhcCCCEEE
Confidence 389999998743 45555555554322 254 5555 466666666654 355543
No 342
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.31 E-value=5e+02 Score=22.10 Aligned_cols=41 Identities=10% Similarity=-0.112 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhHc--CccccccceeeccchhHHHHHHHhc
Q 030178 133 TPIEVTVISLSLLPSF--VKLKCSILYCGVVALVAKQMLLLFT 173 (182)
Q Consensus 133 ~~~~~~~~al~~l~~~--G~ir~~~~~iGvs~~~~~~~~~l~~ 173 (182)
...++..++++.+++. |..-.--+-+|+-+-+.+.+++.++
T Consensus 256 ~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~ 298 (418)
T PRK14336 256 YTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYK 298 (418)
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHH
Confidence 3356777777777776 5532112337777777777766554
No 343
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.12 E-value=65 Score=25.58 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHcCCCeeeccCCCCCCcHHHHHHHhhccCCCCCEEEEeccCCCcCCCCCCCCCCHHHHHHHHHHHHHH
Q 030178 36 EPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGYHGDPAYVRAACEASLKR 115 (182)
Q Consensus 36 ~~~~~~~l~~a~~~G~~~~Dta~~Yg~g~~e~~lG~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 115 (182)
+....+.++.+-+.|++.+..++.+-. -++...-++++......+.+-+-++...... ....+++...+.+++-|++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~--~~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDPES--DFSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSHHH--HTT--CCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCchh--cccCCHHHHHHHHHHHHHC
Confidence 345667777777888888888776542 1333344555554556677777777543110 1112344555555555554
Q ss_pred hCCCccceEEeecC
Q 030178 116 LDVDCIDLYYQHRI 129 (182)
Q Consensus 116 Lg~~~lDl~~lh~~ 129 (182)
| .|.+++..-
T Consensus 160 -G---A~~ViiEar 169 (244)
T PF02679_consen 160 -G---ADKVIIEAR 169 (244)
T ss_dssp -T---ECEEEE--T
T ss_pred -C---CCEEEEeee
Confidence 3 455555544
No 344
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=20.10 E-value=3e+02 Score=18.84 Aligned_cols=62 Identities=11% Similarity=0.008 Sum_probs=40.3
Q ss_pred CCCCEEEEec-cCCCcCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC-CCCHHHHHHHHHHHhH
Q 030178 77 FRERAELATK-FGIGIVDGKYGYHGDPAYVRAACEASLKRLD--VDCIDLYYQHRIDT-QTPIEVTVISLSLLPS 147 (182)
Q Consensus 77 ~r~~~~i~tK-~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~lDl~~lh~~d~-~~~~~~~~~al~~l~~ 147 (182)
+|-.+.|+-| ++. ...+..+++.+.++.+... ....|++++-.+.. ..++.+..+.|..|.+
T Consensus 45 ~R~G~~VsKK~~g~---------AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~ 110 (114)
T PRK01732 45 PRLGLTVAKKNVKR---------AHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWR 110 (114)
T ss_pred cEEEEEEEcccCcc---------hhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 4555677777 442 2557777777777776542 23579999988755 3557777777777654
No 345
>KOG1767 consensus 40S ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=41 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=19.3
Q ss_pred HHHHHHHHhHcCccccccceeeccchhHHHH
Q 030178 138 TVISLSLLPSFVKLKCSILYCGVVALVAKQM 168 (182)
Q Consensus 138 ~~~al~~l~~~G~ir~~~~~iGvs~~~~~~~ 168 (182)
+-.+|++|..+|+|+. ||.++..+|
T Consensus 77 Ar~alr~L~~kG~Ik~------Vs~h~~q~I 101 (110)
T KOG1767|consen 77 ARAALRELSNKGVIKQ------VSKHSKQVI 101 (110)
T ss_pred HHHHHHHHHhcchHHH------Hhhcchhee
Confidence 4578999999999997 666665443
Done!