Query 030179
Match_columns 181
No_of_seqs 178 out of 1537
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00175 diphthine synthase; P 100.0 7.5E-39 1.6E-43 263.4 17.4 168 1-172 2-169 (270)
2 TIGR00522 dph5 diphthine synth 100.0 2.5E-36 5.5E-41 247.3 18.8 168 1-172 1-169 (257)
3 COG1798 DPH5 Diphthamide biosy 100.0 8.3E-36 1.8E-40 237.7 15.8 169 1-173 1-170 (260)
4 PRK04160 diphthine synthase; P 100.0 1.9E-31 4E-36 218.6 19.4 166 1-170 1-168 (258)
5 COG2243 CobF Precorrin-2 methy 100.0 1.4E-31 3E-36 214.2 15.1 161 1-173 3-178 (234)
6 PRK06136 uroporphyrin-III C-me 100.0 2.5E-31 5.5E-36 216.2 13.3 164 1-172 4-175 (249)
7 KOG3123 Diphthine synthase [Tr 100.0 2.5E-31 5.3E-36 207.1 10.8 169 1-173 1-169 (272)
8 TIGR01469 cobA_cysG_Cterm urop 100.0 1.3E-30 2.8E-35 210.3 14.2 165 1-173 1-172 (236)
9 PRK05948 precorrin-2 methyltra 100.0 3.1E-30 6.8E-35 209.0 15.6 161 1-172 5-181 (238)
10 TIGR01465 cobM_cbiF precorrin- 100.0 4E-30 8.7E-35 206.7 14.2 160 2-171 1-164 (229)
11 PF00590 TP_methylase: Tetrapy 100.0 1.2E-29 2.6E-34 200.6 16.5 156 1-172 1-168 (210)
12 COG0007 CysG Uroporphyrinogen- 100.0 1.6E-30 3.4E-35 209.2 11.2 168 1-179 5-186 (244)
13 PRK05990 precorrin-2 C(20)-met 100.0 3.5E-29 7.6E-34 203.4 17.1 155 1-167 4-180 (241)
14 PLN02625 uroporphyrin-III C-me 100.0 2.2E-29 4.9E-34 206.8 15.1 162 1-170 16-185 (263)
15 PRK15473 cbiF cobalt-precorrin 100.0 2.2E-29 4.7E-34 206.3 14.2 162 1-172 9-174 (257)
16 PRK05576 cobalt-precorrin-2 C( 100.0 1.3E-28 2.7E-33 198.5 17.0 159 1-171 3-175 (229)
17 PRK05787 cobalt-precorrin-6Y C 100.0 5.9E-29 1.3E-33 197.4 12.9 150 1-171 1-152 (210)
18 TIGR01467 cobI_cbiL precorrin- 100.0 4.2E-28 9.1E-33 195.4 17.4 159 1-170 2-175 (230)
19 COG2875 CobM Precorrin-4 methy 100.0 1.2E-28 2.7E-33 194.9 13.7 161 1-170 4-168 (254)
20 COG2241 CobL Precorrin-6B meth 100.0 7.1E-29 1.5E-33 196.3 11.9 148 1-171 1-150 (210)
21 PRK08284 precorrin 6A synthase 100.0 3.1E-28 6.7E-33 198.8 14.9 140 1-141 3-169 (253)
22 PRK10637 cysG siroheme synthas 100.0 1.7E-28 3.8E-33 215.5 12.6 165 1-172 217-385 (457)
23 PRK07168 bifunctional uroporph 100.0 1.8E-28 4E-33 215.6 12.5 161 1-168 4-169 (474)
24 TIGR02434 CobF precorrin-6A sy 100.0 1.1E-27 2.4E-32 195.1 13.9 139 1-140 2-167 (249)
25 TIGR01466 cobJ_cbiH precorrin- 99.9 1.7E-26 3.6E-31 187.0 16.7 120 2-132 1-125 (239)
26 PRK05765 precorrin-3B C17-meth 99.9 1.5E-26 3.2E-31 188.5 16.2 154 1-170 3-163 (246)
27 PRK15478 cbiH cobalt-precorrin 99.9 1.2E-26 2.7E-31 188.4 15.5 155 1-169 1-160 (241)
28 PRK05991 precorrin-3B C17-meth 99.9 1.6E-26 3.5E-31 188.6 15.8 121 1-132 4-131 (250)
29 TIGR02467 CbiE precorrin-6y C5 99.9 1.3E-26 2.7E-31 183.8 11.0 146 4-170 1-148 (204)
30 PRK14994 SAM-dependent 16S rib 99.9 3.8E-26 8.2E-31 189.5 13.1 159 1-175 13-176 (287)
31 COG1010 CobJ Precorrin-3B meth 99.9 6.5E-26 1.4E-30 179.9 13.1 152 1-169 4-163 (249)
32 KOG1527 Uroporphyrin III methy 99.9 1.1E-22 2.4E-27 169.4 9.1 169 1-179 257-438 (506)
33 COG0313 Predicted methyltransf 99.8 7.5E-18 1.6E-22 137.3 13.9 158 1-176 6-170 (275)
34 TIGR00096 probable S-adenosylm 99.7 2.7E-17 5.8E-22 135.8 13.1 159 1-176 1-165 (276)
35 COG3956 Protein containing tet 99.4 4.5E-12 9.8E-17 106.0 11.0 130 1-135 4-140 (488)
36 KOG0024 Sorbitol dehydrogenase 75.6 7.3 0.00016 33.4 5.4 30 2-33 173-202 (354)
37 COG1063 Tdh Threonine dehydrog 73.5 6.9 0.00015 33.4 4.9 31 1-33 171-201 (350)
38 TIGR02495 NrdG2 anaerobic ribo 70.7 18 0.00039 27.6 6.3 52 66-117 49-100 (191)
39 TIGR01917 gly_red_sel_B glycin 69.9 16 0.00035 32.3 6.3 55 66-120 321-377 (431)
40 TIGR01921 DAP-DH diaminopimela 69.6 28 0.00061 29.7 7.7 51 68-118 99-152 (324)
41 TIGR03365 Bsubt_queE 7-cyano-7 69.1 17 0.00037 29.3 6.1 52 67-118 59-111 (238)
42 COG0602 NrdG Organic radical a 68.2 19 0.0004 28.7 6.0 50 66-115 58-107 (212)
43 cd06167 LabA_like LabA_like pr 67.4 19 0.0004 26.3 5.6 42 69-114 87-130 (149)
44 TIGR01918 various_sel_PB selen 64.9 23 0.00049 31.4 6.3 56 66-121 321-378 (431)
45 cd00885 cinA Competence-damage 63.7 8.8 0.00019 29.4 3.2 30 6-35 39-68 (170)
46 PF01936 NYN: NYN domain; Int 59.4 22 0.00048 25.5 4.7 42 69-114 83-126 (146)
47 cd05013 SIS_RpiR RpiR-like pro 59.1 58 0.0013 22.7 8.2 84 80-171 14-97 (139)
48 TIGR00288 conserved hypothetic 58.6 34 0.00073 26.2 5.6 31 80-114 106-136 (160)
49 PF13353 Fer4_12: 4Fe-4S singl 57.0 32 0.0007 24.5 5.2 50 68-117 39-95 (139)
50 COG1432 Uncharacterized conser 54.2 46 0.001 25.7 5.9 44 73-120 102-147 (181)
51 PF02441 Flavoprotein: Flavopr 51.6 31 0.00068 24.8 4.3 42 80-122 1-42 (129)
52 PRK01215 competence damage-ind 51.4 83 0.0018 25.9 7.3 31 5-35 42-72 (264)
53 PRK13762 tRNA-modifying enzyme 49.2 34 0.00074 29.0 4.8 36 80-115 131-167 (322)
54 COG0391 Uncharacterized conser 43.2 34 0.00074 29.2 3.8 30 2-34 169-199 (323)
55 TIGR03820 lys_2_3_AblA lysine- 41.9 98 0.0021 27.4 6.6 47 66-113 143-193 (417)
56 TIGR02109 PQQ_syn_pqqE coenzym 41.1 73 0.0016 26.9 5.6 33 81-113 55-87 (358)
57 PRK05301 pyrroloquinoline quin 39.6 77 0.0017 27.1 5.6 34 81-114 64-97 (378)
58 PF01933 UPF0052: Uncharacteri 39.5 41 0.00089 28.3 3.7 28 3-32 163-190 (300)
59 COG1504 Uncharacterized conser 39.2 67 0.0015 23.2 4.2 22 3-24 65-86 (121)
60 smart00046 DAGKc Diacylglycero 39.2 1.4E+02 0.003 21.2 7.1 47 80-130 50-101 (124)
61 COG0420 SbcD DNA repair exonuc 38.7 65 0.0014 27.7 5.0 51 65-115 24-83 (390)
62 PF04055 Radical_SAM: Radical 38.7 1.2E+02 0.0025 21.5 5.7 39 80-118 46-87 (166)
63 PF13394 Fer4_14: 4Fe-4S singl 38.5 38 0.00082 23.5 2.9 35 81-115 49-88 (119)
64 cd04922 ACT_AKi-HSDH-ThrA_2 AC 37.4 44 0.00095 20.3 2.9 30 1-30 3-32 (66)
65 COG1058 CinA Predicted nucleot 37.3 39 0.00085 27.9 3.2 26 9-34 44-69 (255)
66 cd06404 PB1_aPKC PB1 domain is 36.7 40 0.00087 22.9 2.6 50 66-115 22-83 (83)
67 COG1634 Uncharacterized Rossma 36.5 41 0.0009 27.3 3.1 28 1-34 54-81 (232)
68 PRK14719 bifunctional RNAse/5- 35.8 2.3E+02 0.0049 24.5 7.8 43 65-111 54-99 (360)
69 cd04917 ACT_AKiii-LysC-EC_2 AC 35.5 64 0.0014 19.8 3.4 31 1-31 3-33 (64)
70 PF06057 VirJ: Bacterial virul 34.6 51 0.0011 26.0 3.3 39 81-122 3-41 (192)
71 cd05560 Xcc1710_like Xcc1710_l 33.7 1.6E+02 0.0035 20.7 5.6 39 80-119 53-91 (109)
72 PRK11557 putative DNA-binding 33.6 2.6E+02 0.0055 22.6 8.7 91 73-171 121-212 (278)
73 COG1597 LCB5 Sphingosine kinas 33.5 1.7E+02 0.0036 24.5 6.5 47 80-130 59-106 (301)
74 cd03816 GT1_ALG1_like This fam 33.4 62 0.0013 28.0 4.0 11 80-90 32-42 (415)
75 PF07302 AroM: AroM protein; 33.3 1.9E+02 0.0042 23.3 6.5 55 10-72 162-218 (221)
76 cd04915 ACT_AK-Ectoine_2 ACT d 33.1 49 0.0011 20.8 2.6 29 1-30 4-32 (66)
77 PF00455 DeoRC: DeoR C termina 32.0 2E+02 0.0043 21.5 6.2 22 67-88 7-28 (161)
78 TIGR03822 AblA_like_2 lysine-2 32.0 1.2E+02 0.0027 25.5 5.5 27 81-107 138-166 (321)
79 PF01924 HypD: Hydrogenase for 31.7 1E+02 0.0022 26.7 4.9 49 67-116 64-113 (355)
80 cd04924 ACT_AK-Arch_2 ACT doma 31.5 63 0.0014 19.5 2.9 30 1-30 3-32 (66)
81 cd05126 Mth938 Mth938 domain. 30.8 1.6E+02 0.0035 21.1 5.2 38 80-117 59-96 (117)
82 PF06414 Zeta_toxin: Zeta toxi 30.7 1.7E+02 0.0038 22.4 5.8 43 68-113 80-125 (199)
83 cd07227 Pat_Fungal_NTE1 Fungal 30.4 52 0.0011 27.2 2.9 42 77-118 6-47 (269)
84 cd04919 ACT_AK-Hom3_2 ACT doma 30.3 67 0.0015 19.6 2.8 29 1-29 3-31 (66)
85 PF08497 Radical_SAM_N: Radica 30.0 1.3E+02 0.0027 25.5 5.0 48 83-130 19-71 (302)
86 COG1184 GCD2 Translation initi 29.9 1.6E+02 0.0035 24.9 5.7 32 82-115 147-178 (301)
87 TIGR02668 moaA_archaeal probab 29.4 1.5E+02 0.0032 24.4 5.5 34 81-114 58-92 (302)
88 TIGR02493 PFLA pyruvate format 29.3 2.2E+02 0.0049 22.2 6.4 35 81-115 67-103 (235)
89 PF03129 HGTP_anticodon: Antic 29.1 1.3E+02 0.0028 19.8 4.3 19 98-116 20-38 (94)
90 TIGR02666 moaA molybdenum cofa 29.0 2E+02 0.0044 24.0 6.4 33 81-113 61-95 (334)
91 cd01335 Radical_SAM Radical SA 29.0 1.9E+02 0.0041 20.9 5.7 38 80-117 45-84 (204)
92 TIGR02764 spore_ybaN_pdaB poly 28.8 1E+02 0.0022 23.4 4.2 46 68-113 140-187 (191)
93 PRK05579 bifunctional phosphop 28.7 4E+02 0.0087 23.3 8.7 51 66-116 170-237 (399)
94 cd04920 ACT_AKiii-DAPDC_2 ACT 28.6 81 0.0018 19.6 3.0 31 1-31 2-32 (63)
95 PRK11337 DNA-binding transcrip 28.6 3.2E+02 0.007 22.2 8.9 91 73-171 133-224 (292)
96 TIGR02884 spore_pdaA delta-lac 28.5 1.3E+02 0.0029 23.8 4.9 44 69-112 176-219 (224)
97 PRK10076 pyruvate formate lyas 28.3 1.6E+02 0.0035 23.3 5.3 33 81-113 40-73 (213)
98 cd03145 GAT1_cyanophycinase Ty 28.2 1E+02 0.0022 24.3 4.2 34 1-34 1-38 (217)
99 PF07991 IlvN: Acetohydroxy ac 28.2 98 0.0021 23.8 3.8 83 78-168 3-94 (165)
100 COG1509 KamA Lysine 2,3-aminom 27.8 1.5E+02 0.0032 25.9 5.2 41 64-105 144-186 (369)
101 TIGR02826 RNR_activ_nrdG3 anae 27.8 2.2E+02 0.0048 21.1 5.7 50 67-117 49-98 (147)
102 cd04937 ACT_AKi-DapG-BS_2 ACT 27.6 76 0.0016 19.6 2.7 31 1-31 3-33 (64)
103 cd07399 MPP_YvnB Bacillus subt 27.5 2.5E+02 0.0055 21.9 6.3 50 66-115 20-77 (214)
104 PF11823 DUF3343: Protein of u 27.5 75 0.0016 20.4 2.8 21 101-121 19-39 (73)
105 PRK15062 hydrogenase isoenzyme 27.3 1.2E+02 0.0027 26.3 4.7 48 67-115 69-117 (364)
106 cd05005 SIS_PHI Hexulose-6-pho 27.3 2.7E+02 0.0058 20.9 8.6 93 63-171 20-112 (179)
107 cd07187 YvcK_like family of mo 27.3 54 0.0012 27.8 2.5 19 14-32 164-182 (308)
108 PRK14717 putative glycine/sarc 27.2 1.1E+02 0.0023 21.7 3.5 8 87-94 42-49 (107)
109 cd07225 Pat_PNPLA6_PNPLA7 Pata 26.8 92 0.002 26.2 3.8 44 75-118 9-52 (306)
110 PRK00861 putative lipid kinase 26.7 2.6E+02 0.0057 22.9 6.6 45 80-128 58-102 (300)
111 TIGR01819 F420_cofD LPPG:FO 2- 26.4 72 0.0016 26.9 3.1 24 7-31 165-188 (297)
112 COG1737 RpiR Transcriptional r 26.3 3.7E+02 0.0079 22.1 8.7 91 71-170 121-213 (281)
113 smart00481 POLIIIAc DNA polyme 26.0 91 0.002 19.3 2.9 19 97-117 44-62 (67)
114 PF11965 DUF3479: Domain of un 25.8 2.3E+02 0.005 21.7 5.5 10 81-90 87-96 (164)
115 PRK06372 translation initiatio 25.4 2.3E+02 0.0049 23.3 5.8 33 81-115 110-142 (253)
116 TIGR03470 HpnH hopanoid biosyn 25.2 1.6E+02 0.0035 24.7 5.1 34 80-113 73-106 (318)
117 PF04430 DUF498: Protein of un 25.0 2.4E+02 0.0052 19.6 5.2 38 81-119 55-92 (110)
118 TIGR00075 hypD hydrogenase exp 24.9 1.3E+02 0.0028 26.2 4.4 48 67-115 75-123 (369)
119 cd05125 Mth938_2P1-like Mth938 24.6 1.1E+02 0.0024 21.9 3.4 29 6-34 31-63 (114)
120 TIGR01826 CofD_related conserv 23.8 68 0.0015 27.2 2.5 19 14-32 161-179 (310)
121 cd05006 SIS_GmhA Phosphoheptos 23.7 3.2E+02 0.0069 20.4 7.6 104 63-171 16-138 (177)
122 cd05312 NAD_bind_1_malic_enz N 23.4 1.2E+02 0.0026 25.4 3.8 90 19-117 97-194 (279)
123 PRK06847 hypothetical protein; 23.1 64 0.0014 27.0 2.3 31 1-34 6-36 (375)
124 PRK11914 diacylglycerol kinase 23.0 2.7E+02 0.0058 22.9 6.0 45 80-128 65-109 (306)
125 PF02780 Transketolase_C: Tran 23.0 1.6E+02 0.0034 20.7 4.0 9 80-88 10-18 (124)
126 cd04892 ACT_AK-like_2 ACT doma 22.9 1.2E+02 0.0025 17.7 2.9 30 1-30 2-31 (65)
127 COG0644 FixC Dehydrogenases (f 22.9 83 0.0018 27.1 2.9 29 2-35 6-36 (396)
128 PRK01747 mnmC bifunctional tRN 22.4 4.6E+02 0.01 24.3 7.9 49 63-118 181-230 (662)
129 COG0421 SpeE Spermidine syntha 22.3 1.2E+02 0.0026 25.3 3.7 29 1-32 79-107 (282)
130 cd04912 ACT_AKiii-LysC-EC-like 22.1 1.1E+02 0.0024 19.6 2.8 30 1-30 3-32 (75)
131 COG0771 MurD UDP-N-acetylmuram 22.0 4.2E+02 0.0091 23.7 7.2 29 64-92 398-426 (448)
132 PF01963 TraB: TraB family; I 21.9 1.8E+02 0.0039 23.0 4.6 44 69-113 216-259 (259)
133 COG0813 DeoD Purine-nucleoside 21.8 68 0.0015 26.0 2.0 21 83-106 16-36 (236)
134 PRK03815 murD UDP-N-acetylmura 21.6 3.7E+02 0.008 23.4 6.7 27 66-92 355-381 (401)
135 cd04916 ACT_AKiii-YclM-BS_2 AC 21.6 1.2E+02 0.0026 18.2 2.8 30 1-30 3-32 (66)
136 cd07044 CofD_YvcK Family of Co 21.6 81 0.0017 26.7 2.5 20 13-32 162-181 (309)
137 PRK13057 putative lipid kinase 21.5 3.5E+02 0.0076 22.0 6.3 35 80-118 51-85 (287)
138 COG0287 TyrA Prephenate dehydr 21.5 89 0.0019 26.0 2.7 15 20-34 59-73 (279)
139 cd00248 Mth938-like Mth938-lik 21.4 1.4E+02 0.0031 20.9 3.4 25 9-33 33-60 (109)
140 cd04923 ACT_AK-LysC-DapG-like_ 21.4 1.3E+02 0.0028 17.7 2.9 30 1-30 2-31 (63)
141 COG0731 Fe-S oxidoreductases [ 21.4 3.3E+02 0.0071 23.0 6.1 47 80-126 81-128 (296)
142 PRK11145 pflA pyruvate formate 21.3 2.2E+02 0.0048 22.5 5.0 35 82-116 73-109 (246)
143 TIGR02113 coaC_strep phosphopa 21.2 1.1E+02 0.0025 23.5 3.1 38 80-118 1-38 (177)
144 PRK05473 hypothetical protein; 21.0 1E+02 0.0022 21.1 2.4 16 81-96 42-57 (86)
145 TIGR02494 PFLE_PFLC glycyl-rad 20.8 3E+02 0.0065 22.4 5.8 33 81-113 127-160 (295)
146 PRK13337 putative lipid kinase 20.7 4.3E+02 0.0094 21.7 6.8 45 80-128 58-104 (304)
147 PF07287 DUF1446: Protein of u 20.6 5.7E+02 0.012 22.2 8.0 29 5-33 1-31 (362)
148 PF01210 NAD_Gly3P_dh_N: NAD-d 20.5 1.3E+02 0.0028 22.3 3.2 51 67-119 83-136 (157)
149 cd04933 ACT_AK1-AT_1 ACT domai 20.3 2.3E+02 0.0051 18.6 4.1 28 87-114 9-36 (78)
150 PF08288 PIGA: PIGA (GPI ancho 20.3 99 0.0021 21.4 2.3 30 90-121 33-62 (90)
151 COG1707 ACT domain-containing 20.1 4.3E+02 0.0094 20.7 6.8 32 80-111 140-172 (218)
No 1
>PTZ00175 diphthine synthase; Provisional
Probab=100.00 E-value=7.5e-39 Score=263.37 Aligned_cols=168 Identities=70% Similarity=1.109 Sum_probs=145.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHHHHccCC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (181)
|||+||+|||||++||+||+++|++||+|+++.+++.+.. ...+ .+..+++++....++..+++.++.+++.++++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~~ts~l~~-~~~~---~l~~~~gk~~~~~~r~~~e~~~~~ii~~a~~~ 77 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSILIN-SNKE---KLEEFYGKPVIEADREMVEEGCDEILEEAKEK 77 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEecccchhcc-CCHH---HHHHhcCCeeEecCccCHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999999998775431 1223 44444555543334445665666777777778
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhcC
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 160 (181)
+|++|++|||++|+++.+++.++++.|+++++|||+|+++|++.+|+++++|+.++++++++.|++|.++++.+++|+.+
T Consensus 78 ~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~~ 157 (270)
T PTZ00175 78 NVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAIGCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRDN 157 (270)
T ss_pred CEEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHHhhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHHHc
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCceEEEEccee
Q 030179 161 GLHTLCLLGGVT 172 (181)
Q Consensus 161 ~~~tlvlld~~~ 172 (181)
++|||||||++.
T Consensus 158 glhTl~lldi~~ 169 (270)
T PTZ00175 158 GLHTLCLLDIKV 169 (270)
T ss_pred CCceEEEEeeec
Confidence 999999999994
No 2
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=100.00 E-value=2.5e-36 Score=247.31 Aligned_cols=168 Identities=49% Similarity=0.817 Sum_probs=142.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHHHHccCC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (181)
|||+||+|||||++||+||+++|++||+|+++.+++.+.. . .++.+..+.++......+..+++.++.+.+.++++
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~~~s~l~~-~---~~~~~~~~~~~~~~~~~~~~~e~~~~~ii~~~~~~ 76 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTSKLLG-S---SIEEIEEFFGKRVVVLERSDVEENSFRLIERAKSK 76 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEeccchhhcc-c---cHHHHHHHhCCcccccCHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999999999999977654321 1 12355555555443333455666677777777668
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhc
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~ 159 (181)
+|+++++|||++|+++.++.+++++.|++++++|||||++++ |++|+|+++++.+.++.+.++|++|.++++.+++|+.
T Consensus 77 ~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~ 156 (257)
T TIGR00522 77 DVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRK 156 (257)
T ss_pred CEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999976 8999999999999999999999998888889999999
Q ss_pred CCCceEEEEccee
Q 030179 160 LGLHTLCLLGGVT 172 (181)
Q Consensus 160 ~~~~tlvlld~~~ 172 (181)
.+.||+||||.+.
T Consensus 157 ~~~~Tlvll~~~~ 169 (257)
T TIGR00522 157 IGLHTLVLLDIHP 169 (257)
T ss_pred cCCCcEEEEeccc
Confidence 9999999998885
No 3
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-36 Score=237.74 Aligned_cols=169 Identities=53% Similarity=0.806 Sum_probs=155.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHHHHccCC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (181)
|+|+||+|+.|...+|+++++++++||.||++.|||.+.. .. ++.+++++++++...+|...|+..+.|++.++++
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E~YTS~~~~-~~---~e~le~~~gkev~~~~R~dlE~~~~~il~~a~~~ 76 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTSILLG-SN---LEKLEELIGKEVILLDREDLEENSRSILDRAKDK 76 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEEeeeccccc-ch---HHHHHHHhCCceEeccHHHHhhcchhHHHHHhcC
Confidence 8999999999999999999999999999999999986532 12 3477777888888878888887777888888888
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhc
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~ 159 (181)
+|++|+.|||++.++|..|+-+++++|+++++|||+|.++|+ ++.|+..++||.++++++++.++.|.++|+.|++|.+
T Consensus 77 ~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~yd~Ik~N~~ 156 (260)
T COG1798 77 DVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPYDVIKENLE 156 (260)
T ss_pred CEEEEecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHHHHHHHhhh
Confidence 999999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred CCCceEEEEcceee
Q 030179 160 LGLHTLCLLGGVTL 173 (181)
Q Consensus 160 ~~~~tlvlld~~~~ 173 (181)
.|+||++|||++..
T Consensus 157 ~GLHTl~lLDi~~~ 170 (260)
T COG1798 157 RGLHTLVLLDIKED 170 (260)
T ss_pred cCccceEEEEeccc
Confidence 99999999999864
No 4
>PRK04160 diphthine synthase; Provisional
Probab=100.00 E-value=1.9e-31 Score=218.59 Aligned_cols=166 Identities=53% Similarity=0.816 Sum_probs=132.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHH-HHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKIL-SESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 79 (181)
|||+||+|||||++||++|+++|++||+|+++.+++.. ..+.++.+..+.++.....++..+++..+.+. +..++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSIL----MGTTIEKLEELIGKEIIVLDREDVEQESEKIILEEAKE 76 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCcc----ccccHHHHHHHhCCceeecCHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999998765431 12333344444434322223445566556554 55555
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHh
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~ 158 (181)
++|++|++|||++|+++.++.+.+++.|++++++|||||+|++ |++|+|++.++.+.++...+.+..+..+++.++++.
T Consensus 77 ~~Vv~L~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~ 156 (258)
T PRK04160 77 KNVAFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNL 156 (258)
T ss_pred CCEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHHHHH
Confidence 8999999999999999999999999889999999999999975 999999999999999887666665556678889999
Q ss_pred cCCCceEEEEcc
Q 030179 159 SLGLHTLCLLGG 170 (181)
Q Consensus 159 ~~~~~tlvlld~ 170 (181)
.++.+|+++++.
T Consensus 157 ~~~~~~~vll~~ 168 (258)
T PRK04160 157 ERGLHTLVLLDI 168 (258)
T ss_pred hcCCCcEEEEEe
Confidence 999999999863
No 5
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.98 E-value=1.4e-31 Score=214.23 Aligned_cols=161 Identities=27% Similarity=0.361 Sum_probs=125.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC--C---cccc---CC-h----HHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--K---PIAL---AD-R----EMVE 67 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~--~---~~~~---~~-~----~~~~ 67 (181)
|+|+||+||||||+||+||+++|++||+|++|..... ++++++ .++.+.. . .+.| .+ + +.|+
T Consensus 3 klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~--~slAr~---Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~ 77 (234)
T COG2243 3 KLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGK--GSLARE---IVEDYLTPGSRIVELHFPMTTDMREELEDAWE 77 (234)
T ss_pred eEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCc--cchHHH---HHHHhcCCCceeeEEEeccCCchHHHHHHHHH
Confidence 6899999999999999999999999999999944321 012333 4454432 1 1111 12 2 4578
Q ss_pred HHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCC
Q 030179 68 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 145 (181)
Q Consensus 68 ~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~ 145 (181)
++++.+.+++.+ ++|+|++.|||+|||++.++.++++.+|+++|++|||||+++| |++|+|+...+++.++.+.+..
T Consensus 78 e~a~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~- 156 (234)
T COG2243 78 EAAAEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRP- 156 (234)
T ss_pred HHHHHHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCc-
Confidence 888888888877 6999999999999999999999999999999999999999986 8999999999999999887653
Q ss_pred CCCChHHHHHHHhcCCCceEEEEcceee
Q 030179 146 RPGSFYEKIKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~tlvlld~~~~ 173 (181)
-+. ........+|.|+|++...
T Consensus 157 -----~~~-~~~~l~~~d~~VvMK~~~~ 178 (234)
T COG2243 157 -----DEE-LERALADFDTAVVMKVGRN 178 (234)
T ss_pred -----hhh-HHhHHhhCCeEEEEecCCc
Confidence 122 3333344588999987653
No 6
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.97 E-value=2.5e-31 Score=216.22 Aligned_cols=164 Identities=24% Similarity=0.293 Sum_probs=122.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHH----H-hCCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----L-YGKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~~~i~~ 75 (181)
|||+||+|||||++||++|+++|++||+|+++.++. .+.++.+.. . ..+..... ...+++..+.+.+
T Consensus 4 ~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 75 (249)
T PRK06136 4 KVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVS-------PEILAYAKPDAELIYVGKRAGRH-STKQEEINRLLVD 75 (249)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhcCCEEEEcCCCC-------HHHHhhCCCCCEEEeCCCcCCCC-CcCHHHHHHHHHH
Confidence 689999999999999999999999999999986532 121111110 0 01111010 1123455566666
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChH-H
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFY-E 152 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~-~ 152 (181)
.+++ ++|+++++|||++|+++.++++++++.|++++++|||||++++ |++|+||++++++.++.+.+.|+++.+.. +
T Consensus 76 ~~~~g~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (249)
T PRK06136 76 YARKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPE 155 (249)
T ss_pred HHHCCCeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccccc
Confidence 5555 7999999999999999999999999889999999999999975 99999999999988888888888765432 2
Q ss_pred HHHHHhcCCCceEEEEccee
Q 030179 153 KIKRNRSLGLHTLCLLGGVT 172 (181)
Q Consensus 153 ~i~~~~~~~~~tlvlld~~~ 172 (181)
..++++.++.+|+|+++...
T Consensus 156 ~~~~~l~~~~~~~vl~~~~~ 175 (249)
T PRK06136 156 VNWSALADGADTLVIYMGVR 175 (249)
T ss_pred cCHHHHhCCCCeEEEECCHH
Confidence 33467777789999986543
No 7
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.5e-31 Score=207.11 Aligned_cols=169 Identities=74% Similarity=1.203 Sum_probs=156.4
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHHHHccCC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (181)
|+|+||+|.|+...||+|.++++++|..|+.+.|+|.+.-|. .. .++.+++++++..||...++..+.|++.+...
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylEaYTSil~~~l-~~---~lEk~yGk~iilADRemvEq~sd~il~~ad~~ 76 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLEAYTSILGVGL-DA---TLEKFYGKEIILADREMVEQESDKILDEADKE 76 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHHHHHHHHHhhh-hH---HHHHHhCceeEeccHHHHHhhHHHHhhhhhhc
Confidence 899999999999999999999999999999999998753211 11 47888999999999999999899999877778
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhcC
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 160 (181)
+|++|+-|||+..++++.+.-++++.|+++++|..-|.+.|..+.|+.+++||+++++++.++.|+|.++|+.|+.|.+.
T Consensus 77 dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~Nr~~ 156 (272)
T KOG3123|consen 77 DVAFLVVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKENRQL 156 (272)
T ss_pred ceEEEEecCcccccchhhhheehhhcCCCeEEEechHHHhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcceee
Q 030179 161 GLHTLCLLGGVTL 173 (181)
Q Consensus 161 ~~~tlvlld~~~~ 173 (181)
|+|||+|||+|..
T Consensus 157 glHTLcLLDIkvk 169 (272)
T KOG3123|consen 157 GLHTLCLLDIKVK 169 (272)
T ss_pred CceeEEEEEEeec
Confidence 9999999999863
No 8
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=99.97 E-value=1.3e-30 Score=210.29 Aligned_cols=165 Identities=24% Similarity=0.273 Sum_probs=121.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHH----H-hCCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----L-YGKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~~~i~~ 75 (181)
+||+||+|||||++||++|+++|++||+|+++.+++ .+.++.+.. + ..+.... ....+++..+.+.+
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 72 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVS-------PEILAYAPPQAELIDVGKRPGC-HSKKQEEINRLLVE 72 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEeCCCC-------HHHHhhCCCCCEEEeCCCCCCC-CCCCHHHHHHHHHH
Confidence 689999999999999999999999999999976542 121111110 0 0111001 11235566666666
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHH
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~ 153 (181)
.+++ ++|+++++|||++|+++.++++++.+.+++++++|||||+|++ |++|+||++++.+.++.+.+.|+++.+....
T Consensus 73 ~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~~~ 152 (236)
T TIGR01469 73 LAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEV 152 (236)
T ss_pred HHHCCCeEEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCccccc
Confidence 5555 7999999999999999999999998889999999999999975 9999999998865566666778776442222
Q ss_pred HHHHhcCCCceEEEEcceee
Q 030179 154 IKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 154 i~~~~~~~~~tlvlld~~~~ 173 (181)
.++++..+.+|+|+++...+
T Consensus 153 ~~~~~~~~~~~~vl~~~~~~ 172 (236)
T TIGR01469 153 DWEALAKGAGTLVIYMGVRN 172 (236)
T ss_pred CHHHHhcCCCeEEEECCHHH
Confidence 35667777789999875443
No 9
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=99.97 E-value=3.1e-30 Score=209.00 Aligned_cols=161 Identities=20% Similarity=0.211 Sum_probs=118.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC--Cccc---c---CCh----HHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KPIA---L---ADR----EMVEE 68 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~--~~~~---~---~~~----~~~~~ 68 (181)
++|+||+|||||++||+||+++|++||+|++|.....-. +++.+ .++.+.. +.+. | .++ ..|++
T Consensus 5 ~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~-s~a~~---i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~ 80 (238)
T PRK05948 5 TLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQP-GLAEQ---IIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQA 80 (238)
T ss_pred EEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCch-hHHHH---HHHHHcCCCcEEEEecCCccCChHHHHHHHHH
Confidence 589999999999999999999999999999986431100 01122 3443321 1111 1 122 34677
Q ss_pred HHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHh--CCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCC
Q 030179 69 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTET 144 (181)
Q Consensus 69 ~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~--~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~ 144 (181)
.++.+.+.+++ ++|++|++|||++||++.++.+.+++ .|+++|+||||||++++ |++|+||++.++++.+++.+
T Consensus 81 ~~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii~~~-- 158 (238)
T PRK05948 81 AADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPAL-- 158 (238)
T ss_pred HHHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEEcCC--
Confidence 78888887766 79999999999999999999999876 48999999999999975 89999999999888887643
Q ss_pred CCCCChHHHHHHHhcCCCceEEEEccee
Q 030179 145 WRPGSFYEKIKRNRSLGLHTLCLLGGVT 172 (181)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~tlvlld~~~ 172 (181)
.++ +.+...+ ...+++|+|+...
T Consensus 159 ~~~----~~l~~~l-~~~~~vVlmk~~~ 181 (238)
T PRK05948 159 YHL----EELEQAL-TWADVVVLMKVSS 181 (238)
T ss_pred CCH----HHHHHHH-hCCCEEEEEECCc
Confidence 222 2333333 3457999998764
No 10
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=99.97 E-value=4e-30 Score=206.68 Aligned_cols=160 Identities=21% Similarity=0.192 Sum_probs=117.9
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC-
Q 030179 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE- 79 (181)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~- 79 (181)
||+||+|||||++||++|+++|++||+|++++.. ...+ .++.+. ++.........++++.+.+.+.+++
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 71 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSL------VPPE---LLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREG 71 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCC------CCHH---HHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCC
Confidence 6899999999999999999999999999996431 0111 121111 1121111112356677777776655
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCC-ChHHHHHHH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG-SFYEKIKRN 157 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~-~~~~~i~~~ 157 (181)
++|++|++|||++|+++.++++++++.|++++++|||||++++ |++|+||+.++++.++.+.+.|+++. ...+. +..
T Consensus 72 ~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~-l~~ 150 (229)
T TIGR01465 72 KLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEK-LAD 150 (229)
T ss_pred CeEEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHH-HHH
Confidence 7999999999999999999999999999999999999999976 89999999998888888888888642 22233 334
Q ss_pred hcCCCceEEEEcce
Q 030179 158 RSLGLHTLCLLGGV 171 (181)
Q Consensus 158 ~~~~~~tlvlld~~ 171 (181)
+.....+++++...
T Consensus 151 ~~~~~~~~vi~~~~ 164 (229)
T TIGR01465 151 LAKHGATMAIFLSA 164 (229)
T ss_pred HhcCCCeEEEECcH
Confidence 44444677777543
No 11
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=99.97 E-value=1.2e-29 Score=200.62 Aligned_cols=156 Identities=31% Similarity=0.314 Sum_probs=117.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC-----CccccCChHHHHHHHHHH--
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG-----KPIALADREMVEEKADKI-- 73 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~i-- 73 (181)
|||+||+|||||++||++|+++|++||+|+++.+ +++.+..+.. ..........+++..+.+
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~r-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 69 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPER-----------ALEIVRDLLPEIFPMGKDRESLEESYDEIAEIIEA 69 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEETT-----------CHHHHHHHHHTEETTSSEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCccccccc-----------chHHHHhhccccccccccccchhhhhhHHHHHHHH
Confidence 7999999999999999999999999999999753 2224433321 110011134577777777
Q ss_pred HHHccC-CCEEEEecCCccccccHHHHHHHHHh--CCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCC
Q 030179 74 LSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGS 149 (181)
Q Consensus 74 ~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~--~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~ 149 (181)
.+.+++ ++|+++++|||++|+++.++++.+++ .|++++++|||||++++ |++|+||++++....+. .++.+
T Consensus 70 ~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~-----~~~~~ 144 (210)
T PF00590_consen 70 IEAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHG-----LRDLD 144 (210)
T ss_dssp HHHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEE-----TSSSS
T ss_pred HHHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEE-----ecccc
Confidence 666655 78999999999999999999999988 99999999999999975 99999999988777665 12211
Q ss_pred -hHHHHHHHhcCCCceEEEEccee
Q 030179 150 -FYEKIKRNRSLGLHTLCLLGGVT 172 (181)
Q Consensus 150 -~~~~i~~~~~~~~~tlvlld~~~ 172 (181)
.....+.++..+.+|+++++...
T Consensus 145 ~~~~~~l~~~~~~~~~~vil~~~~ 168 (210)
T PF00590_consen 145 TEREKLLENLLANGDTLVILTDPR 168 (210)
T ss_dssp HHHHHHHHHHHTTTSEEEEEESGC
T ss_pred cchHHHHHHHHhCCCEEEEEccCc
Confidence 24556777777789999995443
No 12
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=99.97 E-value=1.6e-30 Score=209.16 Aligned_cols=168 Identities=23% Similarity=0.272 Sum_probs=130.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhh----HHH-hCCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTL----EKL-YGKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~i~~ 75 (181)
++|+||.|||||++||+||.++|++||+|+|+...+. +.++.+ +.+ .+|..-.+ ....+++.+.+.+
T Consensus 5 kV~lVGAGPGdp~LLTlka~~~L~~ADvvlyD~LV~~-------~il~~~~~~a~~i~vGkr~g~~-~~~q~eIn~~lv~ 76 (244)
T COG0007 5 KVYLVGAGPGDPGLLTLRALRALQEADVVLYDRLVPE-------EVLALARRDAERIYVGKRPGGH-SKPQDEINALLVE 76 (244)
T ss_pred eEEEEecCCCChhhhhHHHHHHHhhCCEEEEcCcCCH-------HHHHhhccCCEEEEecCcCCCC-CCCHHHHHHHHHH
Confidence 5899999999999999999999999999999876542 211111 111 13322111 1123567777888
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHH
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~ 153 (181)
++++ ++|++|+.|||++|+++.++.+.+.+.|+++||+|||||..++ +..|+|+++.+.+.++.+.+.|.++.. .
T Consensus 77 ~a~~G~~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh~~~~~---~ 153 (244)
T COG0007 77 LAREGKRVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGHDRDGK---L 153 (244)
T ss_pred HHhcCCeEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCcCCCCC---c
Confidence 7777 7999999999999999999999999999999999999997765 899999999999999999999987644 3
Q ss_pred HHHHhcCCCceEEEE-------cceeeeeccCC
Q 030179 154 IKRNRSLGLHTLCLL-------GGVTLCVDHSL 179 (181)
Q Consensus 154 i~~~~~~~~~tlvll-------d~~~~~~~~~~ 179 (181)
.|..+.....|+|+| ++.+.|.+||+
T Consensus 154 ~w~~la~~~~TlVi~Mg~~~l~~i~~~Li~~G~ 186 (244)
T COG0007 154 DWEALARSVGTLVILMGASRLAEIARELIAHGR 186 (244)
T ss_pred ChHHhcccCCCEEEEeCcchHHHHHHHHHHcCC
Confidence 466677677788776 55556666654
No 13
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.97 E-value=3.5e-29 Score=203.38 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=111.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC--Ccc---cc---CC----------
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG--KPI---AL---AD---------- 62 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~--~~~---~~---~~---------- 62 (181)
+||+||+|||||++||+||+++|++||+|+++...+. ...+++.++.+.. ..+ .+ .+
T Consensus 4 ~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~-----~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~ 78 (241)
T PRK05990 4 RLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGK-----KGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYET 78 (241)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCC-----cchHHHHHHHHcCCCceEEEeecCCccccccccchhhh
Confidence 5899999999999999999999999999999854311 0111123333321 111 11 01
Q ss_pred --hHHHHHHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEE
Q 030179 63 --REMVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSI 138 (181)
Q Consensus 63 --~~~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v 138 (181)
...|+++++.+.+++++ ++|++|++|||++||++.++.+.++ .++++|+||||||++++ |++|+||+..++.+++
T Consensus 79 ~~~~~~~~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i 157 (241)
T PRK05990 79 VIADFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSV 157 (241)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEE
Confidence 23467788888888766 7999999999999999999988885 47999999999999975 8999999988887777
Q ss_pred ecccCCCCCCChHHHHHHHhcCCCceEEE
Q 030179 139 PFFTETWRPGSFYEKIKRNRSLGLHTLCL 167 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~tlvl 167 (181)
+.... + .+.+++.+.....++++
T Consensus 158 ~~~~~---~---~~~l~~~l~~~~~~vv~ 180 (241)
T PRK05990 158 LSGVL---P---EEELRRRLADADAAVIM 180 (241)
T ss_pred EcCCC---C---hHHHHHHHhCCCCEEEE
Confidence 65321 2 23455555555344444
No 14
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=99.96 E-value=2.2e-29 Score=206.85 Aligned_cols=162 Identities=24% Similarity=0.271 Sum_probs=119.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHH-----HhCCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK-----LYGKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~ 75 (181)
+||+||+|||||++||++|+++|++||+|+++.+.. .+.++.+.. ..++..... ...+++..+.+.+
T Consensus 16 ~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 87 (263)
T PLN02625 16 NVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVS-------PDILDLVPPGAELLYVGKRGGYH-SRTQEEIHELLLS 87 (263)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeCcCC-------HHHHHhcCCCCEEEecCCcCCcc-ccCHHHHHHHHHH
Confidence 589999999999999999999999999999986532 121111110 001110111 1235666676766
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHH-
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYE- 152 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~- 152 (181)
.+.+ ++|++|++|||++|+++.++++.+++.|++++++|||||++++ |++|+||++.+...++.+.+.|+++.+..+
T Consensus 88 ~~~~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~~~~~~ 167 (263)
T PLN02625 88 FAEAGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTDPL 167 (263)
T ss_pred HHHCCCeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEEecccCCCcccch
Confidence 6545 7999999999999999999999998889999999999999975 999999998876656666778887643211
Q ss_pred HHHHHhcCCCceEEEEcc
Q 030179 153 KIKRNRSLGLHTLCLLGG 170 (181)
Q Consensus 153 ~i~~~~~~~~~tlvlld~ 170 (181)
..+..+..+.+|+|+++.
T Consensus 168 ~~~~~~~~~~~t~vl~~~ 185 (263)
T PLN02625 168 DVAEAAADPDTTLVVYMG 185 (263)
T ss_pred hhHHHHhCCCCeEEEECc
Confidence 235555666789999864
No 15
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=99.96 E-value=2.2e-29 Score=206.29 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=116.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
+||+||+|||||++||++|+++|++||+|+++... ...+ .++.+. .+.........++++.+.+.+.+++
T Consensus 9 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~------~~~~---l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 79 (257)
T PRK15473 9 CVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSL------INTE---LLDYCPAQAECHDSAELHLEQIIDLMEAGVKA 79 (257)
T ss_pred EEEEEEeCCCChHHhhHHHHHHHHhCCEEEEeccc------CCHH---HHhhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 58999999999999999999999999999997431 0111 111111 1111111113466777777776655
Q ss_pred -CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCCh-HHHHHH
Q 030179 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSF-YEKIKR 156 (181)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~-~~~i~~ 156 (181)
++|++|++|||++||++.++++++.+.+++++++|||||+|++ |++|+||+..+.+-++.+.+.|++...+ .+. +.
T Consensus 80 g~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~~~~~-l~ 158 (257)
T PRK15473 80 GKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAREQ-LE 158 (257)
T ss_pred CCeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCCchhh-HH
Confidence 7999999999999999999999999889999999999999975 9999999864443444455677774321 223 45
Q ss_pred HhcCCCceEEEEccee
Q 030179 157 NRSLGLHTLCLLGGVT 172 (181)
Q Consensus 157 ~~~~~~~tlvlld~~~ 172 (181)
.+.....|+|++....
T Consensus 159 ~~~~~~~t~vi~~~~~ 174 (257)
T PRK15473 159 SFASHQTSMAIFLSVQ 174 (257)
T ss_pred HHhcCCCeEEEECCch
Confidence 5556667888886544
No 16
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=99.96 E-value=1.3e-28 Score=198.54 Aligned_cols=159 Identities=27% Similarity=0.330 Sum_probs=116.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCc--cc---c---CC----hHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKP--IA---L---AD----REMVEE 68 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~--~~---~---~~----~~~~~~ 68 (181)
|||+||+|||||++||++|+++|++||+|++++++..- ....++.+..+..+. .. + .+ ...|++
T Consensus 3 ~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (229)
T PRK05576 3 KLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGG----GSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKE 78 (229)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCc----hhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHH
Confidence 68999999999999999999999999999998654210 011112334333211 11 1 11 234667
Q ss_pred HHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCC
Q 030179 69 KADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR 146 (181)
Q Consensus 69 ~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~ 146 (181)
..+.+.+++++ ++|++|++|||++|+++.++.+.+++.|++++++|||||+|++ |++|+||+..++.+.+++. |+
T Consensus 79 ~~~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~--~~- 155 (229)
T PRK05576 79 NAEEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPA--TR- 155 (229)
T ss_pred HHHHHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEEC--CC-
Confidence 77777776655 7999999999999999999999998878999999999999975 8999999988776776644 43
Q ss_pred CCChHHHHHHHhcCCCceEEEEcce
Q 030179 147 PGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 147 ~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
.+.+...+.. ..|+|++...
T Consensus 156 ----~~~l~~~l~~-~~~~vl~~~~ 175 (229)
T PRK05576 156 ----EALIEQALTD-FDSVVLMKVY 175 (229)
T ss_pred ----HHHHHHHhhc-CCEEEEEecC
Confidence 2344455544 4788888643
No 17
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.96 E-value=5.9e-29 Score=197.39 Aligned_cols=150 Identities=25% Similarity=0.344 Sum_probs=106.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|||+||+|||||++||++|+++|++||+|+++. ++++.+..+. .+..... ..+++..+.+....++
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~-----------~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~g 67 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK-----------RVLELFPELIDGEAFVLT--AGLRDLLEWLELAAKG 67 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH-----------hHHHHHHHhccCccEEec--CCHHHHHHHHHHhhCC
Confidence 899999999999999999999999999999852 3334555443 2222111 1123444444433345
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHh
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~ 158 (181)
++|+++++|||++||.+..+.+.+ ..+++++++|||||+|++ |++|+||+++ .+.+.|+++... +.+...+
T Consensus 68 ~~V~~l~~GDP~~~~~~~~~~~~~-~~~~~veviPGiSs~~aaaa~~g~~l~~~------~~is~~~~~~~~-~~l~~~~ 139 (210)
T PRK05787 68 KNVVVLSTGDPLFSGLGKLLKVRR-AVAEDVEVIPGISSVQYAAARLGIDMNDV------VFTTSHGRGPNF-EELEDLL 139 (210)
T ss_pred CcEEEEecCCccccccHHHHHHHh-ccCCCeEEEcCHHHHHHHHHHhCCCHHHc------EEEeecCCCcch-HHHHHHH
Confidence 899999999999999776665544 334899999999999975 8999999963 234567776443 4456666
Q ss_pred cCCCceEEEEcce
Q 030179 159 SLGLHTLCLLGGV 171 (181)
Q Consensus 159 ~~~~~tlvlld~~ 171 (181)
..+.++++++|..
T Consensus 140 ~~~~~~v~l~~~~ 152 (210)
T PRK05787 140 KNGRKVIMLPDPR 152 (210)
T ss_pred HcCCeEEEEcCCC
Confidence 6777777777544
No 18
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=99.96 E-value=4.2e-28 Score=195.44 Aligned_cols=159 Identities=28% Similarity=0.358 Sum_probs=114.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC---Cccc---c---CCh----HHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIA---L---ADR----EMVE 67 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~---~~~~---~---~~~----~~~~ 67 (181)
|||+||+|||||++||++|+++|++||+|+++.+... ...+.++.+..+.. +++. + .++ ..++
T Consensus 2 ~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (230)
T TIGR01467 2 KLYGVGVGPGDPELITVKALEALRSADVIAVPASKKG----RESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWD 77 (230)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCC----CcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHH
Confidence 6899999999999999999999999999999876321 00122334343332 2211 1 111 2355
Q ss_pred HHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCC
Q 030179 68 EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW 145 (181)
Q Consensus 68 ~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~ 145 (181)
++++.+.+.+++ ++|++|++|||++|+++.++.+++.+.|++++++|||||++++ |++|+||++.+..+++.. .|.
T Consensus 78 ~~~~~i~~~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~~--~~~ 155 (230)
T TIGR01467 78 EAAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILP--ATA 155 (230)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEEe--CCC
Confidence 677777776665 7999999999999999999999998878999999999999975 899999998776666653 333
Q ss_pred CCCChHHHHHHHhcCCCceEEEEcc
Q 030179 146 RPGSFYEKIKRNRSLGLHTLCLLGG 170 (181)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~tlvlld~ 170 (181)
+ .+.+.+.+..+ .|+++|..
T Consensus 156 ~----~~~~~~~~~~~-~~vvil~~ 175 (230)
T TIGR01467 156 G----EAELEKALAEF-DTVVLMKV 175 (230)
T ss_pred C----HHHHHHHhccC-CeEEEEec
Confidence 2 23444555554 56666643
No 19
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-28 Score=194.87 Aligned_cols=161 Identities=24% Similarity=0.283 Sum_probs=124.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
++|+||.||||||+||+|+++.|++||+|+|...- ++++ .++.+. +.++.-.-..+++++.+.+.+..++
T Consensus 4 ~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSL------V~~e---lL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~ 74 (254)
T COG2875 4 KVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSL------VPPE---LLEYCRPDAEIVNSASLTLEEIIDLMVDAVRE 74 (254)
T ss_pred eEEEEccCCCCcceeeehHHHHHhhCCEEEECCCc------CCHH---HHhhcCCCCEEEecCcCCHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999997542 2344 333321 2222211123578888888887766
Q ss_pred -CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCC-CCChHHHHHH
Q 030179 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWR-PGSFYEKIKR 156 (181)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~-~~~~~~~i~~ 156 (181)
|+|++|.+|||.+||...+..+++++.|++++++||||||.|+ |.+|..++..+.+.++++....+| |...-+.+..
T Consensus 75 Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~ 154 (254)
T COG2875 75 GKDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAA 154 (254)
T ss_pred CCeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHHH
Confidence 8999999999999999999999999999999999999999875 889999999998888887666666 3333566666
Q ss_pred HhcCCCceEEEEcc
Q 030179 157 NRSLGLHTLCLLGG 170 (181)
Q Consensus 157 ~~~~~~~tlvlld~ 170 (181)
-...+..+.+||.+
T Consensus 155 la~~~aTm~I~L~v 168 (254)
T COG2875 155 LAKHGATMVIFLGV 168 (254)
T ss_pred HHhcCceeEeeehh
Confidence 66666566666644
No 20
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.96 E-value=7.1e-29 Score=196.26 Aligned_cols=148 Identities=22% Similarity=0.265 Sum_probs=111.7
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC-CccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG-KPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|+++||+||||+++||.+|+++|++||+|++. +|+|+.++.+.. +...+... ...+..+.+.++.++
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~-----------kr~L~~~~~~~~~~~~~~~~~-~~~~~l~~i~~~~~g 68 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGS-----------KRHLELLPPLIKAERIIWPYP-FDAESLEEILAERKG 68 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeec-----------HHHHHhhhccccceEEEeccc-cchHHHHHHHHHhCC
Confidence 89999999999999999999999999999974 677777776653 33333222 222233445444457
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHh
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~ 158 (181)
++||+|++|||+||+.+..+.+.+.. .+++|+|||||+|+| ||+|++|++ +.+.|.|+++ .+.+...+
T Consensus 69 ~~v~VLasGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~------~~~islHgr~---~~~l~~~~ 137 (210)
T COG2241 69 RDVVVLASGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQD------TEVISLHGRP---VELLRPLL 137 (210)
T ss_pred CCeEEEecCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHH------eEEEEecCCC---HHHHHHHH
Confidence 89999999999999999888877654 389999999999975 999999997 4456788888 55666666
Q ss_pred cCCCceEEEEcce
Q 030179 159 SLGLHTLCLLGGV 171 (181)
Q Consensus 159 ~~~~~tlvlld~~ 171 (181)
..+...+++.+-+
T Consensus 138 ~~~~~~vil~~~~ 150 (210)
T COG2241 138 ENGRRLVILTPDD 150 (210)
T ss_pred hCCceEEEeCCCC
Confidence 5555555555543
No 21
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.96 E-value=3.1e-28 Score=198.82 Aligned_cols=140 Identities=21% Similarity=0.263 Sum_probs=100.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC---Ccc---cc--CC---------h
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPI---AL--AD---------R 63 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~---~~~---~~--~~---------~ 63 (181)
+||+||+||||||+||+||+++|++||+|++|.....- .++..-..+.++.+.. ..+ .+ .+ .
T Consensus 3 kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~-~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 3 RLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADK-DDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred EEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCc-hhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 58999999999999999999999999999998652100 0011001123333321 111 11 01 1
Q ss_pred HHHHHH-----HHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHh---CCCcEEEECCccHHHHH-HHcCCCcccCC
Q 030179 64 EMVEEK-----ADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNASVMNAV-GICGLQLYRFG 133 (181)
Q Consensus 64 ~~~~~~-----~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~---~g~~v~iiPGiSs~~a~-a~~g~~l~~~~ 133 (181)
..|++. ++.|.+.+++ ++|+++++|||++||++.++++.+.+ +|++++++|||||++++ |++|+||++.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~~ 161 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRIG 161 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcCC
Confidence 122222 4556676666 79999999999999999999999875 48999999999999976 89999999988
Q ss_pred ceeEEecc
Q 030179 134 ETVSIPFF 141 (181)
Q Consensus 134 ~~~~v~~~ 141 (181)
+++.+++.
T Consensus 162 ~~l~ii~g 169 (253)
T PRK08284 162 EPVHITTG 169 (253)
T ss_pred ceEEEEec
Confidence 88887643
No 22
>PRK10637 cysG siroheme synthase; Provisional
Probab=99.96 E-value=1.7e-28 Score=215.46 Aligned_cols=165 Identities=22% Similarity=0.291 Sum_probs=120.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccc-cccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHcc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSL-LSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQ 78 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~-l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~ 78 (181)
+||+||+|||||++||++|+++|++||+|+++.+... +.+ ...+ ....+. ++...+. ...++++.+.+.+.++
T Consensus 217 ~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 291 (457)
T PRK10637 217 EVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMN-LVRR---DADRVFVGKRAGYH-CVPQEEINQILLREAQ 291 (457)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHcCCEEEECCCCCHHHHh-hccc---CCEEEEcCCCCCCC-CcCHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999765421 100 0000 000010 1111010 1124566677776665
Q ss_pred C-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHH
Q 030179 79 E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (181)
Q Consensus 79 ~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~ 156 (181)
+ ++|++|++|||++||++.++++++.+.|++++++|||||+|++ |++|+||+.++.+.++.+.+.|+++....+ +.
T Consensus 292 ~G~~Vv~L~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~~~~~~~~--~~ 369 (457)
T PRK10637 292 KGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELD--WE 369 (457)
T ss_pred CCCEEEEEeCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCccCCCCccC--HH
Confidence 5 7899999999999999999999998889999999999999975 899999999887666666788877543221 45
Q ss_pred HhcCCCceEEEEccee
Q 030179 157 NRSLGLHTLCLLGGVT 172 (181)
Q Consensus 157 ~~~~~~~tlvlld~~~ 172 (181)
++..+.+|+||++...
T Consensus 370 ~l~~~~~t~Vl~~~~~ 385 (457)
T PRK10637 370 NLAAEKQTLVFYMGLN 385 (457)
T ss_pred HHhCCCCeEEEECCHh
Confidence 5667789999986543
No 23
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.96 E-value=1.8e-28 Score=215.56 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=114.0
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccc-cccccccchhhhhHHH-hCCccccCChHH-HHHHHHHHHHHc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSL-LSFGLSTDGLSTLEKL-YGKPIALADREM-VEEKADKILSES 77 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~-l~~g~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~i~~~~ 77 (181)
+||+||+|||||++||+||+++|++||+|+|+...+. +.. ...+ ....+ .++... +... .+++.+.+.+.+
T Consensus 4 ~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvydrlv~~~~l~-~~~~---~~~~i~~gk~~~--~~~~~qe~i~~~l~~~a 77 (474)
T PRK07168 4 YVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLS-YTKQ---TCELMYCGKMPK--NHIMRQEMINAHLLQFA 77 (474)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhCCEEEEeCcCCHHHHh-hcCC---CcEEEeccCcCC--CccccHHHHHHHHHHHH
Confidence 4899999999999999999999999999999754321 100 0000 00000 111110 1111 123344556665
Q ss_pred cC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHH
Q 030179 78 QE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (181)
Q Consensus 78 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~ 155 (181)
++ ++|++|++|||++||++.++++++.+.|+++||+|||||++++ |++|+||++.+.+.++.+.+.|.++...-...+
T Consensus 78 ~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~~~~~~ 157 (474)
T PRK07168 78 KEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHGKY 157 (474)
T ss_pred hCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccccchhH
Confidence 55 7899999999999999999999999999999999999999975 899999999998888888898876421112234
Q ss_pred HHhcCCCceEEEE
Q 030179 156 RNRSLGLHTLCLL 168 (181)
Q Consensus 156 ~~~~~~~~tlvll 168 (181)
..+.. ..|+|||
T Consensus 158 ~~l~~-~~tlV~l 169 (474)
T PRK07168 158 NSSHN-SDTIAYY 169 (474)
T ss_pred HHhcC-CCeEEEE
Confidence 44444 3577777
No 24
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.95 E-value=1.1e-27 Score=195.13 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=99.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhC---Cccc---cC---C-h-------
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYG---KPIA---LA---D-R------- 63 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~---~~~~---~~---~-~------- 63 (181)
+||+||+||||||+||+||+++|++||+|+++.....-. ++..-..+.+..+.. +++. +. + .
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~-~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~ 80 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKS-DLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAV 80 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCch-hHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhH
Confidence 589999999999999999999999999999975421100 000001123332221 1111 10 0 0
Q ss_pred HHHH-----HHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHh---CCCcEEEECCccHHHHH-HHcCCCcccCC
Q 030179 64 EMVE-----EKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNASVMNAV-GICGLQLYRFG 133 (181)
Q Consensus 64 ~~~~-----~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~---~g~~v~iiPGiSs~~a~-a~~g~~l~~~~ 133 (181)
..|+ ++++.|.+.+++ ++|++|++|||++||++.++.+++++ .+++++++|||||++++ |++|+||++.+
T Consensus 81 ~~~~~~~~~~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 81 DDWHAQRADIWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 1122 456677776666 79999999999999999999998876 47899999999999975 89999999988
Q ss_pred ceeEEec
Q 030179 134 ETVSIPF 140 (181)
Q Consensus 134 ~~~~v~~ 140 (181)
+.+.++.
T Consensus 161 ~~l~v~~ 167 (249)
T TIGR02434 161 EPVQITT 167 (249)
T ss_pred ceEEEEe
Confidence 7777654
No 25
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=99.95 E-value=1.7e-26 Score=187.04 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=88.6
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC-
Q 030179 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE- 79 (181)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~- 79 (181)
||+||+|||||++||++|+++|++||+|+++.+ +++.++.+. +++..........+..+.+.+.+++
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 69 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT-----------YLDLIEDLIPGKEVVTSGMREEIARAELAIELAAEG 69 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc-----------HHHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999998642 222444332 2222111111112233334444444
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCC--CcEEEECCccHHHHH-HHcCCCcccC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYRF 132 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g--~~v~iiPGiSs~~a~-a~~g~~l~~~ 132 (181)
++|++|++|||++||++.++.+.+++.+ ++++++|||||+|++ |++|+||++.
T Consensus 70 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~ 125 (239)
T TIGR01466 70 RTVALVSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHD 125 (239)
T ss_pred CCEEEEecCCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccc
Confidence 8999999999999999999999887654 599999999999975 9999999653
No 26
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=99.95 E-value=1.5e-26 Score=188.50 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=104.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|||+||+|||||++||++|+++|++||+|+++... .+.+..+. +++....+........+.+.+.+++
T Consensus 3 ~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (246)
T PRK05765 3 KLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTY-----------LRLISDLLDGKEVIGARMKEEIFRANTAIEKALE 71 (246)
T ss_pred EEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCH-----------HHHHHHhcCCCEEecCCchHHHHHHHHHHHHHHC
Confidence 68999999999999999999999999999986432 11232222 2222211111111122445555555
Q ss_pred -CCEEEEecCCccccccHHHHHHHHHhCCC--cEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCC--CCCChHHH
Q 030179 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGI--QVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETW--RPGSFYEK 153 (181)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~~~~~g~--~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~--~~~~~~~~ 153 (181)
++|++|++|||++|+++.++.+.+++.|+ +++++|||||++++ |++|+||++.. .+.+.|. .|......
T Consensus 72 g~~Vv~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~-----~~~s~~~~~~p~~~~~~ 146 (246)
T PRK05765 72 GNIVALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDF-----VVISLSDLLIPREEILH 146 (246)
T ss_pred CCcEEEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCc-----EEEEcCCCCCChHHHHH
Confidence 79999999999999999999999988776 79999999999975 89999996432 2233342 33221111
Q ss_pred HHHHhcCCCceEEEEcc
Q 030179 154 IKRNRSLGLHTLCLLGG 170 (181)
Q Consensus 154 i~~~~~~~~~tlvlld~ 170 (181)
-+..+.....|++|++-
T Consensus 147 ~l~~~~~~~~~ivly~~ 163 (246)
T PRK05765 147 RVTKAAEADFVIVFYNP 163 (246)
T ss_pred HHHHHhcCCeEEEEEcc
Confidence 23344566688888773
No 27
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=99.95 E-value=1.2e-26 Score=188.43 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=103.1
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|||+||+|||||++||+||+++|++||+|+++... .+.+..+. ++...........+..+.+++.+++
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~-----------~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~ 69 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTY-----------THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQA 69 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcH-----------HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHC
Confidence 89999999999999999999999999999986431 11222221 2222111111112333445555555
Q ss_pred -CCEEEEecCCccccccHHHHHHHHHhCC--CcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHH
Q 030179 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLG--IQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (181)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~~~~~g--~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~ 155 (181)
++|++|++|||++|+++.++.+.+.+.+ ++++++|||||++++ |++|+||++.....++. ....|....+.-+
T Consensus 70 g~~Vv~L~sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~---~~~~~~~~~~~~~ 146 (241)
T PRK15478 70 GHNVALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLS---DLLTPWPVIEKRI 146 (241)
T ss_pred CCeEEEEECCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecc---cCCCCcHHHHHhH
Confidence 8999999999999999999999887654 669999999999975 89999997654433331 1111211112223
Q ss_pred HHhcCCCceEEEEc
Q 030179 156 RNRSLGLHTLCLLG 169 (181)
Q Consensus 156 ~~~~~~~~tlvlld 169 (181)
..+.....|++|+.
T Consensus 147 ~a~~~~~~tlvlym 160 (241)
T PRK15478 147 VAAGEADFVICFYN 160 (241)
T ss_pred HHHhcCCeEEEEEC
Confidence 33445556888864
No 28
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=188.64 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=87.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCC-ccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK-PIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
+||+||+|||||++||++|+++|++||+|+++.. .++.+...... .....+++..++..+.+....++
T Consensus 4 ~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 72 (250)
T PRK05991 4 RLFVIGTGPGNPEQMTPEALAAVEAATDFFGYGP-----------YLDRLPLRADQLRHASDNREELDRAGAALAMAAAG 72 (250)
T ss_pred eEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcHH-----------HHHhhhccccccccCCCCHHHHHHHHHHHHHHHCC
Confidence 5899999999999999999999999999998532 11122110010 11112222333333333333455
Q ss_pred CCEEEEecCCccccccHHHHHHHHHh-----CCCcEEEECCccHHHHH-HHcCCCcccC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKK-----LGIQVKAVHNASVMNAV-GICGLQLYRF 132 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~-----~g~~v~iiPGiSs~~a~-a~~g~~l~~~ 132 (181)
++|++|++|||++|+++.++.+.+++ .+++++++|||||+|++ |++|+||.+.
T Consensus 73 ~~Vv~l~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~ 131 (250)
T PRK05991 73 ANVCVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHD 131 (250)
T ss_pred CeEEEEeCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCC
Confidence 89999999999999999999888874 46899999999999975 9999999754
No 29
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.94 E-value=1.3e-26 Score=183.78 Aligned_cols=146 Identities=20% Similarity=0.170 Sum_probs=105.7
Q ss_pred EEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCC-ccccCChHHHHHHHHHHHHHccCCCE
Q 030179 4 IIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGK-PIALADREMVEEKADKILSESQESNV 82 (181)
Q Consensus 4 iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~V 82 (181)
+||+|||||++||++|+++|++||+|+++. +.++.+..+.++ .........+++..+.+.+.+++++|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~v 69 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGE-----------RHLELLAELIGEKREIILTYKDLDELLEFIAATRKEKRV 69 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEech-----------hhHHHHhhhcCCceEeccCcCCHHHHHHHHHHhcCCCCE
Confidence 699999999999999999999999999863 223344433322 11111122466777777766556799
Q ss_pred EEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhcCC
Q 030179 83 AFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSLG 161 (181)
Q Consensus 83 ~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~ 161 (181)
+++++|||++|+++.++.+.+.+ .+++++|||||+|++ |++|+||++. .+.+.|+++... ..+..+..+
T Consensus 70 v~l~~GDP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~------~~is~~~~~~~~--~~~~~l~~~ 139 (204)
T TIGR02467 70 VVLASGDPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDA------VVISLHGRELDE--LLLALLRGH 139 (204)
T ss_pred EEEecCCCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhC------eEEEeeCCCCcH--HHHHHHhcC
Confidence 99999999999999999888754 379999999999975 9999999753 234566665321 134556666
Q ss_pred CceEEEEcc
Q 030179 162 LHTLCLLGG 170 (181)
Q Consensus 162 ~~tlvlld~ 170 (181)
..+++|++.
T Consensus 140 ~~~vvl~~~ 148 (204)
T TIGR02467 140 RKVAVLTDP 148 (204)
T ss_pred CcEEEEeCC
Confidence 677777754
No 30
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=99.94 E-value=3.8e-26 Score=189.46 Aligned_cols=159 Identities=22% Similarity=0.250 Sum_probs=115.4
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHH-hCCccc-cCChHHHHHHHHHHHHHcc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIA-LADREMVEEKADKILSESQ 78 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~i~~~~~ 78 (181)
+||+||+||||+++||+||+++|++||+|+|+++.. ..+ .++.+ ..+++. +.+ ..+++.++.+.+.++
T Consensus 13 ~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~------t~~---ll~~~~i~~~~~~~~~-~~~~~~~~~i~~~l~ 82 (287)
T PRK14994 13 QLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRH------TGL---LLQHFAINARLFALHD-HNEQQKAETLLAKLQ 82 (287)
T ss_pred eEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcc------hHH---HHhhcCCCCEEEEccC-CCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999987631 111 11111 122322 222 346777788888776
Q ss_pred C-CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHH
Q 030179 79 E-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (181)
Q Consensus 79 ~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~ 155 (181)
+ ++|++++ .|||++|+++.++++.+++.|+++++|||+||++++ +++|+|.+.|- -..+++.. . ......+
T Consensus 83 ~G~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~-f~Gflp~~--~---~~r~~~L 156 (287)
T PRK14994 83 EGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFC-YEGFLPAK--S---KGRRDAL 156 (287)
T ss_pred CCCeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcce-EeEECCCC--C---chHHHHH
Confidence 6 7999998 999999999999999999999999999999999875 89999954420 00122211 1 1123345
Q ss_pred HHhcCCCceEEEEcceeeee
Q 030179 156 RNRSLGLHTLCLLGGVTLCV 175 (181)
Q Consensus 156 ~~~~~~~~tlvlld~~~~~~ 175 (181)
..+.....|+|||+...|+.
T Consensus 157 ~~l~~~~~t~V~yesp~R~~ 176 (287)
T PRK14994 157 KALEAEPRTLIFYESTHRLL 176 (287)
T ss_pred HHHhcCCCeEEEEEEChhHH
Confidence 55666679999999866653
No 31
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=99.94 E-value=6.5e-26 Score=179.87 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=110.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHHHHccC-
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQE- 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 79 (181)
|||+||+|||+++++|++|.++|++||+|++-. .+ ++.++...++++.-.+...--+.+++.++.+++
T Consensus 4 ~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~--~Y---------~d~i~l~~~k~v~~s~m~~Ei~Ra~~AielA~~G 72 (249)
T COG1010 4 KLYVVGIGPGDPELMTPEARRALEEADVIVGYT--TY---------LDLIELRPGKEVIRSGMREEIERAKEAIELAAEG 72 (249)
T ss_pred eEEEEEeCCCChhhCCHHHHHHHHhCCEEEecH--HH---------HHHHhcCCCCEEEeCCcHhHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999742 11 112331123444322222222456667777777
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhC---CCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKL---GIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~---g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~ 155 (181)
++|+++++|||.+|+.....++.+.+. +++++|+||||+.+++ |++|.|+.+.. .++..|++..| |+.|.
T Consensus 73 ~~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF---~~ISLSDlLtP---we~Ie 146 (249)
T COG1010 73 RDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDF---CVISLSDLLTP---WEVIE 146 (249)
T ss_pred CeEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccce---EEEEhHhcCCc---HHHHH
Confidence 799999999999999999888888754 4899999999998875 89999998865 44455888777 77777
Q ss_pred HHhc---CCCceEEEEc
Q 030179 156 RNRS---LGLHTLCLLG 169 (181)
Q Consensus 156 ~~~~---~~~~tlvlld 169 (181)
+++. ...-.++|+.
T Consensus 147 kRl~aAA~adfVi~~YN 163 (249)
T COG1010 147 KRLRAAAEADFVIALYN 163 (249)
T ss_pred HHHHHHhhCCEEEEEEC
Confidence 6543 2224455553
No 32
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.88 E-value=1.1e-22 Score=169.35 Aligned_cols=169 Identities=18% Similarity=0.210 Sum_probs=124.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHH----HhCCccccCCh-HHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----LYGKPIALADR-EMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~----~~~~~~~~~~~-~~~~~~~~~i~~ 75 (181)
.||+||.|||+|++||++|+++|++||+++++..++. ..|+.+.+ ++.++.. .+. ...++.-+..++
T Consensus 257 ~i~LvGsGPGsp~lLT~~A~~~I~sAD~~LaDkLVp~-------avL~Lipp~t~lfia~Kfp-Gna~raQ~Elh~~~l~ 328 (506)
T KOG1527|consen 257 DIYLVGSGPGSPELLTLKAVRVIQSADLLLADKLVPN-------AVLELIPPDTRLFIAGKFP-GNASRAQEELHELLLN 328 (506)
T ss_pred cEEEEccCCCChhheeHHHHHHHhhcceehhhhcccH-------HHHhhcCCCCceEEeecCC-CchhHHHHHHHHHHHH
Confidence 4899999999999999999999999999999865431 11111111 1111211 111 223455566666
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHH
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~ 153 (181)
.+.. -.|++|+-|||++|+++.+....++++|+...++|||||..++ +.+|+|+++.+..-.+.+++++++-... .
T Consensus 329 ~l~~G~~VVRLKqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG~~--p 406 (506)
T KOG1527|consen 329 FLEAGATVVRLKQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKGGT--P 406 (506)
T ss_pred HHhCCCEEEEecCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCCCC--C
Confidence 6666 4899999999999999999999999999999999999997765 7899999999999999999999874331 1
Q ss_pred HHHHhcCCCceEEEEcce------eeeeccCC
Q 030179 154 IKRNRSLGLHTLCLLGGV------TLCVDHSL 179 (181)
Q Consensus 154 i~~~~~~~~~tlvlld~~------~~~~~~~~ 179 (181)
.....-....|.++|.+. |-|+|||+
T Consensus 407 ~ip~fvp~~TtVflMaLhrl~~L~q~L~~hGw 438 (506)
T KOG1527|consen 407 AIPAFVPDTTTVFLMALHRLPSLAQKLMDHGW 438 (506)
T ss_pred CccccCCCceeEeeehhcchHHHHHHHHhcCC
Confidence 233344445666666554 45788875
No 33
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=99.77 E-value=7.5e-18 Score=137.31 Aligned_cols=158 Identities=25% Similarity=0.343 Sum_probs=119.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHH-hCCcc-ccCChHHHHHHHHHHHHHcc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPI-ALADREMVEEKADKILSESQ 78 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~i~~~~~ 78 (181)
++|+|++..||.+.||.||+++|++||+|++++... ... .+..+ +.++. .+++. +.++....+++.++
T Consensus 6 ~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~------t~~---LL~~~~I~~~~is~h~h-ne~~~~~~li~~l~ 75 (275)
T COG0313 6 TLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRV------TRK---LLSHLGIKTPLISYHEH-NEKEKLPKLIPLLK 75 (275)
T ss_pred eEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHH------HHH---HHHHhCCCCceecccCC-cHHHHHHHHHHHHh
Confidence 489999999999999999999999999999986531 111 22322 12222 22222 23445566777777
Q ss_pred C-CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEECCccHHH-HHHHcCCCcccCCceeEEecccCCCCCCCh--HHH
Q 030179 79 E-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN-AVGICGLQLYRFGETVSIPFFTETWRPGSF--YEK 153 (181)
Q Consensus 79 ~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~-a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~--~~~ 153 (181)
+ ++|++++ .|-|++.+++..|++++++.|++|+++||.||+. |++.+|+|-+.| .-.++.|.+. ...
T Consensus 76 ~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F--------~F~GFLP~k~~~R~~ 147 (275)
T COG0313 76 KGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRF--------LFEGFLPRKSKERRK 147 (275)
T ss_pred cCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCe--------eEeccCCCCccHHHH
Confidence 7 5999998 9999999999999999999999999999999976 559999998874 1245555443 344
Q ss_pred HHHHhcCCCceEEEEcceeeeec
Q 030179 154 IKRNRSLGLHTLCLLGGVTLCVD 176 (181)
Q Consensus 154 i~~~~~~~~~tlvlld~~~~~~~ 176 (181)
.++.+.....|+||++-.+|+.+
T Consensus 148 ~l~~l~~~~~t~IfyEsphRl~~ 170 (275)
T COG0313 148 RLEALANEPRTLIFYESPHRLLA 170 (275)
T ss_pred HHHHHHhcCCeEEEEecchhHHH
Confidence 56667777789999999888753
No 34
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.74 E-value=2.7e-17 Score=135.75 Aligned_cols=159 Identities=21% Similarity=0.189 Sum_probs=116.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHH-hCCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|+|+|++..||-+.+|+||+++|++||+|+++++... +. .+..+ +.++.......+.++..+.+.+.++.
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t------~k---LL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~ 71 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTS------KL---LLHLGIIATPKAFHIDNEFQEKQNLLAAKLEI 71 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhH------HH---HHHhcCCCCceEEEecccHhHHHHHHHHHHHc
Confidence 8999999999999999999999999999999876311 11 12211 12232221122223344555565555
Q ss_pred -CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCCh--HHHH
Q 030179 80 -SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSF--YEKI 154 (181)
Q Consensus 80 -~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~--~~~i 154 (181)
++|++++ .|-|++.+++..+++.+.+.|+++.++||.|++.++ +.+|.+-..| . -.++.|.+. .+..
T Consensus 72 g~~valvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f------~--F~GFlp~k~~~r~~~ 143 (276)
T TIGR00096 72 GNNIAVSSDAGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRF------F--FGGFLPKKSKRRQAL 143 (276)
T ss_pred CCcEEEEecCCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCce------E--EeeeCCCChHHHHHH
Confidence 7899998 999999999999999999999999999999998765 8899887653 1 133444332 4456
Q ss_pred HHHhcCCCceEEEEcceeeeec
Q 030179 155 KRNRSLGLHTLCLLGGVTLCVD 176 (181)
Q Consensus 155 ~~~~~~~~~tlvlld~~~~~~~ 176 (181)
++.+.....|+||++..+|+.+
T Consensus 144 l~~l~~~~~t~ifyEsp~Rl~~ 165 (276)
T TIGR00096 144 KAYIAEERTTVFFYESHHRLLT 165 (276)
T ss_pred HHHHhCCCCeEEEEECcHhHHH
Confidence 6777788899999999988753
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.38 E-value=4.5e-12 Score=105.95 Aligned_cols=130 Identities=20% Similarity=0.351 Sum_probs=97.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccc----cc-cccccchhhhhHHHhCCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSL----LS-FGLSTDGLSTLEKLYGKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~----l~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 75 (181)
||++||+|+|+.+.||+...++|+++|-+++...... +. .|+..+ .++..+.+.-.| ...|+.++..+.+
T Consensus 4 ~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~RTkdHPviE~l~~e~~~f~---~fD~iYE~heqF--e~VYd~I~~~Lve 78 (488)
T COG3956 4 TITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKDHPVIEELDEEGIKFS---FFDDIYETHEQF--EAVYDFIAADLVE 78 (488)
T ss_pred eEEEEeeCCCchhhcchHHHHHHhccceEEEecCCCchHHHHHhhcceee---ehhHHHhhhhhH--HHHHHHHHHHHHH
Confidence 6899999999999999999999999999998654311 21 122222 333333222222 3467888888999
Q ss_pred HccCCCEEEEecCCccccccHHHHHH-HHHhCCCcEEEECCccHHHHH-HHcCCCcccCCce
Q 030179 76 ESQESNVAFLVVGDPFGATTHTDLVV-RAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGET 135 (181)
Q Consensus 76 ~~~~~~V~~l~~GDP~~~~~~~~l~~-~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~ 135 (181)
.++++++++.++|+|++..+...++. +.++.++.|.|+||.|.+.+. ..+.+...++-..
T Consensus 79 aAkekdIvYAVPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q~ 140 (488)
T COG3956 79 AAKEKDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQI 140 (488)
T ss_pred hhcccceEEecCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCceE
Confidence 88889999999999999988777764 456678999999999999874 8888887765433
No 36
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.57 E-value=7.3 Score=33.40 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=26.5
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCeEEEcC
Q 030179 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEA 33 (181)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~ 33 (181)
+.|.|+|| ..++|..+.+++-.+|+|+.+-
T Consensus 173 vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 173 VLVLGAGP--IGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred EEEECCcH--HHHHHHHHHHHcCCCcEEEeec
Confidence 56888888 6799999999999999999873
No 37
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=73.52 E-value=6.9 Score=33.36 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=25.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEA 33 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~ 33 (181)
++.|+|+|| ..+++..+.+..-.+.+|+.+.
T Consensus 171 ~V~V~GaGp--IGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 171 TVVVVGAGP--IGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred EEEEECCCH--HHHHHHHHHHHcCCceEEEeCC
Confidence 367889998 6799999988888888888753
No 38
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=70.73 E-value=18 Score=27.59 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCcc
Q 030179 66 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 117 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiS 117 (181)
.+++.+.+.+....-+.+.++.|+|+++.....+++.+++.|+.+.+...-+
T Consensus 49 ~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 49 VEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 3455555544322224556789999998777788888888888887775444
No 39
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=69.85 E-value=16 Score=32.33 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHccC-C-CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHH
Q 030179 66 VEEKADKILSESQE-S-NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (181)
Q Consensus 66 ~~~~~~~i~~~~~~-~-~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~ 120 (181)
.++..++|.+.+++ + +.++|+|..|..--.+..+.+++++.|+++..+--+..++
T Consensus 321 a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~ 377 (431)
T TIGR01917 321 SKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIA 377 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHH
Confidence 34556666666655 5 9999999999888888888999999999999988887665
No 40
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=69.59 E-value=28 Score=29.70 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=32.9
Q ss_pred HHHHHHHHHccC-CCEEEEecC-CccccccHHHHHHHHHhCCCcEEEE-CCccH
Q 030179 68 EKADKILSESQE-SNVAFLVVG-DPFGATTHTDLVVRAKKLGIQVKAV-HNASV 118 (181)
Q Consensus 68 ~~~~~i~~~~~~-~~V~~l~~G-DP~~~~~~~~l~~~~~~~g~~v~ii-PGiSs 118 (181)
+..+.+.+.+++ ++++++..| ||+++|.-+.+.+.+--+|...... ||+|-
T Consensus 99 ~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ 152 (324)
T TIGR01921 99 RHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQ 152 (324)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCc
Confidence 344555555665 789988866 9999998777666654445444433 66664
No 41
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=69.10 E-value=17 Score=29.27 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=36.7
Q ss_pred HHHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 67 EEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 67 ~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
+++.+.+.+.... ..-+.++.|.|+++.-...+++.+++.|+++.+.-.=+-
T Consensus 59 ~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 59 EEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred HHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 4455555443222 356788999999987677888889889999888765554
No 42
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=19 Score=28.72 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECC
Q 030179 66 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 115 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPG 115 (181)
.+++.+.+.+......-+.++.|+|+...-...+++.+++.|+++.+--+
T Consensus 58 ~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETn 107 (212)
T COG0602 58 ADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETN 107 (212)
T ss_pred HHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCC
Confidence 34555555443222245778999997776677888999988988887663
No 43
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=67.41 E-value=19 Score=26.26 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=29.6
Q ss_pred HHHHHHHHccC--CCEEEEecCCccccccHHHHHHHHHhCCCcEEEEC
Q 030179 69 KADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (181)
Q Consensus 69 ~~~~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiP 114 (181)
++-.+.+.+.. -++++|++||- -...+++.+++.|.+|.++.
T Consensus 87 l~~d~~~~~~~~~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 87 LAIDALELAYKRRIDTIVLVSGDS----DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred HHHHHHHHhhhcCCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEc
Confidence 33334444433 38999999995 55567888888898888874
No 44
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=64.90 E-value=23 Score=31.42 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHccC-C-CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHH
Q 030179 66 VEEKADKILSESQE-S-NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA 121 (181)
Q Consensus 66 ~~~~~~~i~~~~~~-~-~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a 121 (181)
.++...+|.+.+++ + +.++|+|..+..--.+..+.+++++.|+++..+--+..++.
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis~ 378 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIAL 378 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHhh
Confidence 34556666666655 5 89999999998888888889999999999999888877653
No 45
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=63.65 E-value=8.8 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.018 Sum_probs=23.1
Q ss_pred ecCCCCccchhHHHHHHHhhCCeEEEcCcc
Q 030179 6 GLGLGDERDITLRGLEAVKKCDKVYIEAYT 35 (181)
Q Consensus 6 G~GpG~~~~lT~~A~~~L~~advv~~~~~~ 35 (181)
++=|.+++.|...-.++++++|+|+....+
T Consensus 39 ~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~ 68 (170)
T cd00885 39 TVVGDDEDRIAEALRRASERADLVITTGGL 68 (170)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCEEEECCCC
Confidence 344778888888878888999999986544
No 46
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=59.42 E-value=22 Score=25.46 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHcc-C-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEEC
Q 030179 69 KADKILSESQ-E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (181)
Q Consensus 69 ~~~~i~~~~~-~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiP 114 (181)
++-.+.+.+. . -+.++|.+|| +-...+++.+++.|.+|.++-
T Consensus 83 l~~d~~~~~~~~~~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 83 LAVDILELAYENPPDTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHHG--GG-SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHhhccCCCEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 3444545443 2 4899999999 456677888888899888885
No 47
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=59.13 E-value=58 Score=22.66 Aligned_cols=84 Identities=11% Similarity=0.085 Sum_probs=50.5
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhc
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~ 159 (181)
++|.+...|. -+....++...+...|..++.+++......... .. .. ...++..+..+......+.+.....
T Consensus 14 ~~i~i~g~g~--s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~---~~~~i~iS~~g~~~~~~~~~~~a~~ 85 (139)
T cd05013 14 RRIYIFGVGS--SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAA-NL--TP---GDVVIAISFSGETKETVEAAEIAKE 85 (139)
T ss_pred CEEEEEEcCc--hHHHHHHHHHHHHHcCCceEEecCHHHHHHHHH-cC--CC---CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7888888885 334555666677777888888877554432221 11 11 1134445655655444556666666
Q ss_pred CCCceEEEEcce
Q 030179 160 LGLHTLCLLGGV 171 (181)
Q Consensus 160 ~~~~tlvlld~~ 171 (181)
++..++++.+-+
T Consensus 86 ~g~~iv~iT~~~ 97 (139)
T cd05013 86 RGAKVIAITDSA 97 (139)
T ss_pred cCCeEEEEcCCC
Confidence 777887777643
No 48
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=58.64 E-value=34 Score=26.22 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=26.8
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEEC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiP 114 (181)
=++.+|++|| +-+..|++++++.|.+|.++-
T Consensus 106 iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 106 IDAVALVTRD----ADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred CCEEEEEecc----HhHHHHHHHHHHCCCEEEEEe
Confidence 3889999999 677789999999999998875
No 49
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=57.04 E-value=32 Score=24.49 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHHHccC-C-CEEEEecCCccc---cccHHHHHHHHHhCCC-cEEEE-CCcc
Q 030179 68 EKADKILSESQE-S-NVAFLVVGDPFG---ATTHTDLVVRAKKLGI-QVKAV-HNAS 117 (181)
Q Consensus 68 ~~~~~i~~~~~~-~-~V~~l~~GDP~~---~~~~~~l~~~~~~~g~-~v~ii-PGiS 117 (181)
+..+++++.+++ + .-+.+..|+|++ +.....+++.+++.+. .+.+. .|..
T Consensus 39 ~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~ 95 (139)
T PF13353_consen 39 EIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFPKKIIILTNGYT 95 (139)
T ss_dssp HHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--
T ss_pred hhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 344445554533 3 556677899999 6666677777877766 34443 4443
No 50
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=54.24 E-value=46 Score=25.69 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHcc--CCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHH
Q 030179 73 ILSESQ--ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMN 120 (181)
Q Consensus 73 i~~~~~--~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~ 120 (181)
+.+++. .-+.++|++|| +-+..+++.++++|.++++++....++
T Consensus 102 ~~~l~~~~~~D~ivl~SgD----~DF~p~v~~~~~~G~rv~v~~~~~~~s 147 (181)
T COG1432 102 AMELADKKNVDTIVLFSGD----GDFIPLVEAARDKGKRVEVAGIEPMTS 147 (181)
T ss_pred HHHhhcccCCCEEEEEcCC----ccHHHHHHHHHHcCCEEEEEecCCcCH
Confidence 444443 25899999999 445567888889999999987766443
No 51
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=51.57 E-value=31 Score=24.78 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=32.7
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV 122 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~ 122 (181)
|++.+..+|-...+- ...+++++++.|+++.++---++....
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 478888999887777 667888998889999999888876654
No 52
>PRK01215 competence damage-inducible protein A; Provisional
Probab=51.44 E-value=83 Score=25.92 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=23.7
Q ss_pred EecCCCCccchhHHHHHHHhhCCeEEEcCcc
Q 030179 5 IGLGLGDERDITLRGLEAVKKCDKVYIEAYT 35 (181)
Q Consensus 5 VG~GpG~~~~lT~~A~~~L~~advv~~~~~~ 35 (181)
+++=|.|++.|...-.++++++|+|+.....
T Consensus 42 ~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~ 72 (264)
T PRK01215 42 ITVVMDDIEEIVSAFREAIDRADVVVSTGGL 72 (264)
T ss_pred EEEeCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3444778888888888888899999886543
No 53
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=49.21 E-value=34 Score=28.99 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=28.6
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEE-CC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV-HN 115 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~ii-PG 115 (181)
+.+++-.+|.|+++.-...+++.+++.|+.+.+. .|
T Consensus 131 ~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG 167 (322)
T PRK13762 131 KHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNG 167 (322)
T ss_pred CEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCC
Confidence 3566666899999987778888899899988766 55
No 54
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=43.17 E-value=34 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.7
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCeEEE-cCc
Q 030179 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYI-EAY 34 (181)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~advv~~-~~~ 34 (181)
+++.| |-+| .-+.+|+++|++||+|++ |..
T Consensus 169 V~~~~--~~~~-~a~~eaveAI~~AD~IviGPgS 199 (323)
T COG0391 169 VRLEG--PEKP-SAAPEAVEAIKEADLIVIGPGS 199 (323)
T ss_pred EEEec--CCCC-CCCHHHHHHHHhCCEEEEcCCc
Confidence 34444 4454 478899999999996655 543
No 55
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=41.89 E-value=98 Score=27.43 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCcccccc--HHHHHHHHHh-CCCc-EEEE
Q 030179 66 VEEKADKILSESQESNVAFLVVGDPFGATT--HTDLVVRAKK-LGIQ-VKAV 113 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~--~~~l~~~~~~-~g~~-v~ii 113 (181)
+++..++|.+. .+-+-++++.|||++.+. ..++++++++ ++++ +++-
T Consensus 143 i~~~i~yI~~~-p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~ 193 (417)
T TIGR03820 143 ILEGIEYIRNT-PQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIG 193 (417)
T ss_pred HHHHHHHHHhc-CCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEe
Confidence 44444444431 223568999999998765 3344566654 2443 4443
No 56
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=41.08 E-value=73 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=25.0
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEE
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV 113 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~ii 113 (181)
..+.+..|+|++..-...+++.+++.|+.+.+.
T Consensus 55 ~~v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~ 87 (358)
T TIGR02109 55 LQLHFSGGEPLARPDLVELVAHARRLGLYTNLI 87 (358)
T ss_pred cEEEEeCccccccccHHHHHHHHHHcCCeEEEE
Confidence 445677899998877777888888878766554
No 57
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=39.58 E-value=77 Score=27.08 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEEC
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiP 114 (181)
..+.+..|+|++..-...+++.+++.|+.+.+.-
T Consensus 64 ~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~T 97 (378)
T PRK05301 64 LQLHFSGGEPLLRKDLEELVAHARELGLYTNLIT 97 (378)
T ss_pred cEEEEECCccCCchhHHHHHHHHHHcCCcEEEEC
Confidence 4455778999998777788888888887776653
No 58
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=39.48 E-value=41 Score=28.32 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=17.3
Q ss_pred EEEecCCCCccchhHHHHHHHhhCCeEEEc
Q 030179 3 YIIGLGLGDERDITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 3 ~iVG~GpG~~~~lT~~A~~~L~~advv~~~ 32 (181)
++.|. |..+ ..+++++++|++||+|++.
T Consensus 163 ~~~~~-~~~~-~~~p~~l~AI~~AD~Iiig 190 (300)
T PF01933_consen 163 FLEGA-PEEA-KANPEALEAIEEADLIIIG 190 (300)
T ss_dssp EEECT-STT---B-HHHHHHHHH-SEEEE-
T ss_pred EEecC-cccc-CCCHHHHHHHHhCCEEEEc
Confidence 44444 4444 4789999999999987764
No 59
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=39.18 E-value=67 Score=23.20 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=10.8
Q ss_pred EEEecCCCCccchhHHHHHHHh
Q 030179 3 YIIGLGLGDERDITLRGLEAVK 24 (181)
Q Consensus 3 ~iVG~GpG~~~~lT~~A~~~L~ 24 (181)
.+||+|-.+--.++.+|.+.++
T Consensus 65 ivvGTG~~G~l~l~~ea~e~~r 86 (121)
T COG1504 65 IVVGTGQSGMLELSEEAREFFR 86 (121)
T ss_pred EEEecCceeEEEeCHHHHHHHH
Confidence 3455555444444555555444
No 60
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=39.15 E-value=1.4e+02 Score=21.19 Aligned_cols=47 Identities=13% Similarity=-0.064 Sum_probs=33.4
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCC-----CcEEEECCccHHHHHHHcCCCcc
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLG-----IQVKAVHNASVMNAVGICGLQLY 130 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g-----~~v~iiPGiSs~~a~a~~g~~l~ 130 (181)
-+.++++.|| |+..+.+..+.+.+ .++-++|+=|.=..+-.+|+|..
T Consensus 50 ~d~vvv~GGD----GTi~~vvn~l~~~~~~~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 50 FDRVLVCGGD----GTVGWVLNALDKRELPLPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred CCEEEEEccc----cHHHHHHHHHHhcccccCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 3578889999 66667777665433 67999999886555556787654
No 61
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=38.75 E-value=65 Score=27.66 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHccCCCE-EEEecCCcc------ccc--cHHHHHHHHHhCCCcEEEECC
Q 030179 65 MVEEKADKILSESQESNV-AFLVVGDPF------GAT--THTDLVVRAKKLGIQVKAVHN 115 (181)
Q Consensus 65 ~~~~~~~~i~~~~~~~~V-~~l~~GDP~------~~~--~~~~l~~~~~~~g~~v~iiPG 115 (181)
...+..+++++.+++.+| ++|..||-+ .+. .....++++...|+++-+|+|
T Consensus 24 d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~G 83 (390)
T COG0420 24 DQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAG 83 (390)
T ss_pred HHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecC
Confidence 334455556666666444 556678732 221 122223444556899999999
No 62
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=38.73 E-value=1.2e+02 Score=21.48 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhC---CCcEEEECCccH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKL---GIQVKAVHNASV 118 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~---g~~v~iiPGiSs 118 (181)
.....+..|||+.+.....++..+.+. ++++.+.-.-+.
T Consensus 46 ~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~ 87 (166)
T PF04055_consen 46 VKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTL 87 (166)
T ss_dssp HEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTT
T ss_pred CcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccc
Confidence 467788899999998887777766554 666666644443
No 63
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=38.49 E-value=38 Score=23.53 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=18.2
Q ss_pred CEEEEecCCccccccHH---HHHHHHHhCC--CcEEEECC
Q 030179 81 NVAFLVVGDPFGATTHT---DLVVRAKKLG--IQVKAVHN 115 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~---~l~~~~~~~g--~~v~iiPG 115 (181)
.-+.+..|+|+++-... .+++.+++.+ ..+.+.-.
T Consensus 49 ~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TN 88 (119)
T PF13394_consen 49 STVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETN 88 (119)
T ss_dssp -EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-
T ss_pred EEEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 34778889999874333 3444444444 55555443
No 64
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=37.37 E-value=44 Score=20.30 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=24.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~ 30 (181)
++.+||.|-.+...+..+..++|.++.+-+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v 32 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNI 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 478999998777788999999999886544
No 65
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=37.30 E-value=39 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=21.7
Q ss_pred CCCccchhHHHHHHHhhCCeEEEcCc
Q 030179 9 LGDERDITLRGLEAVKKCDKVYIEAY 34 (181)
Q Consensus 9 pG~~~~lT~~A~~~L~~advv~~~~~ 34 (181)
+.+++.|...-..+++++|+|+....
T Consensus 44 gD~~~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 44 GDNPDRIVEALREASERADVVITTGG 69 (255)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 56888899999999999999998543
No 66
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=36.74 E-value=40 Score=22.94 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHc---cCC--CEEEEe-cCCccccccHHHHHHHHH------hCCCcEEEECC
Q 030179 66 VEEKADKILSES---QES--NVAFLV-VGDPFGATTHTDLVVRAK------KLGIQVKAVHN 115 (181)
Q Consensus 66 ~~~~~~~i~~~~---~~~--~V~~l~-~GDP~~~~~~~~l~~~~~------~~g~~v~iiPG 115 (181)
+++..+++.+.. +++ ++=++- -|||...|+-.+|.++++ +.+.-+.|.||
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ihvfp~ 83 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNIHVFPG 83 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEEEecCC
Confidence 555555555543 223 333443 599999999988877664 23455666665
No 67
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=36.52 E-value=41 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=20.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAY 34 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~ 34 (181)
.++|||.||+-.+.+.. -.++++++.+.
T Consensus 54 ~v~vvG~gP~l~e~~~~------~~~~~vi~Adg 81 (232)
T COG1634 54 EVAVVGAGPSLEEEIKG------LSSEVVIAADG 81 (232)
T ss_pred EEEEECCCCcHhhhhcc------cccceEEeccH
Confidence 37899999987665554 45788887654
No 68
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=35.81 E-value=2.3e+02 Score=24.54 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHccC-CCEEEEecCCccccccH--HHHHHHHHhCCCcEE
Q 030179 65 MVEEKADKILSESQE-SNVAFLVVGDPFGATTH--TDLVVRAKKLGIQVK 111 (181)
Q Consensus 65 ~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~--~~l~~~~~~~g~~v~ 111 (181)
...++++.|++ .+ ++|++++ ||--.+.+ ..+.+.+++.|++|+
T Consensus 54 p~~~cad~ii~--~gi~rVVi~~--D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 54 PVFQIADDLIA--ENISEVILLT--DFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred chHHHHHHHHH--cCCCEEEEEE--CCCCCCCccchHHHHHHHHCCCEEE
Confidence 33447777665 24 7888888 77655433 456788899998884
No 69
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.54 E-value=64 Score=19.81 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=24.7
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYI 31 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~ 31 (181)
++.+||.|..+...+..+..++|++..+.+.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~i 33 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRMI 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEEE
Confidence 4789999996666788899999988766654
No 70
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=34.60 E-value=51 Score=26.01 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=30.9
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV 122 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~ 122 (181)
.++++.|||=++-+....+.+++.+.|++|. ||.|+-++
T Consensus 3 t~~v~~SGDgGw~~~d~~~a~~l~~~G~~Vv---Gvdsl~Yf 41 (192)
T PF06057_consen 3 TLAVFFSGDGGWRDLDKQIAEALAKQGVPVV---GVDSLRYF 41 (192)
T ss_pred EEEEEEeCCCCchhhhHHHHHHHHHCCCeEE---EechHHHH
Confidence 5788889999998888888889988887764 66666554
No 71
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=33.68 E-value=1.6e+02 Score=20.65 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~ 119 (181)
-++.++-.|....+- ...+.+.+++.|+.+|+-+--.+.
T Consensus 53 peiliiGTG~~~~~~-~~~~~~~l~~~gi~vE~m~T~~Ac 91 (109)
T cd05560 53 PEVILLGTGERQRFP-PPALLAPLLARGIGVEVMDTQAAC 91 (109)
T ss_pred CCEEEEecCCCCCcC-CHHHHHHHHHcCCeEEEECHHHHH
Confidence 368889999998766 567788899999999997755443
No 72
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=33.63 E-value=2.6e+02 Score=22.59 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=50.9
Q ss_pred HHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChH
Q 030179 73 ILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFY 151 (181)
Q Consensus 73 i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~ 151 (181)
+.+.+.+ ++|.+.-.|-- +....++...+...|..+............ ...+ .+.+ .++..|..+......
T Consensus 121 ~~~~i~~a~~I~i~G~G~s--~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~-~~~~--~~~D---v~I~iS~sg~~~~~~ 192 (278)
T PRK11557 121 CVTMLRSARRIILTGIGAS--GLVAQNFAWKLMKIGINAVAERDMHALLAT-VQAL--SPDD---LLLAISYSGERRELN 192 (278)
T ss_pred HHHHHhcCCeEEEEecChh--HHHHHHHHHHHhhCCCeEEEcCChHHHHHH-HHhC--CCCC---EEEEEcCCCCCHHHH
Confidence 3334444 78888888843 345556666677777777665443332222 1111 2222 233345555444445
Q ss_pred HHHHHHhcCCCceEEEEcce
Q 030179 152 EKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 152 ~~i~~~~~~~~~tlvlld~~ 171 (181)
+.+.....+|..++++++-.
T Consensus 193 ~~~~~ak~~ga~iI~IT~~~ 212 (278)
T PRK11557 193 LAADEALRVGAKVLAITGFT 212 (278)
T ss_pred HHHHHHHHcCCCEEEEcCCC
Confidence 66677777888999998854
No 73
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=33.49 E-value=1.7e+02 Score=24.51 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=36.0
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCc-EEEECCccHHHHHHHcCCCcc
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQ-VKAVHNASVMNAVGICGLQLY 130 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~-v~iiPGiSs~~a~a~~g~~l~ 130 (181)
-+.++...|| |+..+.+..+...+.+ +-++|+=|.=..+=.+|+|..
T Consensus 59 ~D~via~GGD----GTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~ 106 (301)
T COG1597 59 YDTVIAAGGD----GTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLD 106 (301)
T ss_pred CCEEEEecCc----chHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCch
Confidence 4899999999 7777888888776667 899998776444445788774
No 74
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=33.41 E-value=62 Score=27.98 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=7.4
Q ss_pred CCEEEEecCCc
Q 030179 80 SNVAFLVVGDP 90 (181)
Q Consensus 80 ~~V~~l~~GDP 90 (181)
.+|.+++..++
T Consensus 32 ~~V~ii~~~~~ 42 (415)
T cd03816 32 WKVDLVGYLET 42 (415)
T ss_pred ceEEEEEecCC
Confidence 48888876544
No 75
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=33.26 E-value=1.9e+02 Score=23.32 Aligned_cols=55 Identities=22% Similarity=0.477 Sum_probs=32.1
Q ss_pred CCccchhHHHHHHHh--hCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHH
Q 030179 10 GDERDITLRGLEAVK--KCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADK 72 (181)
Q Consensus 10 G~~~~lT~~A~~~L~--~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (181)
|+.+.+...| +.|+ .||+|+.++- |+..++-+.+.+..++++... +....+.+.+
T Consensus 162 ~~~~~l~~Aa-~~L~~~gadlIvLDCm------GYt~~~r~~~~~~~g~PVlLs-r~lvAr~~~E 218 (221)
T PF07302_consen 162 GDEEELAAAA-RELAEQGADLIVLDCM------GYTQEMRDIVQRALGKPVLLS-RTLVARLAAE 218 (221)
T ss_pred CCHHHHHHHH-HHHHhcCCCEEEEECC------CCCHHHHHHHHHHhCCCEEeH-HHHHHHHHHH
Confidence 3555555555 5555 9999998754 344555556666667777653 3333444333
No 76
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=33.11 E-value=49 Score=20.83 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=23.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~ 30 (181)
++.+||.|...++ +..+..++|.+..+=+
T Consensus 4 ~VsvVG~gm~~~g-v~~ki~~~L~~~~I~v 32 (66)
T cd04915 4 IVSVIGRDLSTPG-VLARGLAALAEAGIEP 32 (66)
T ss_pred EEEEECCCCCcch-HHHHHHHHHHHCCCCE
Confidence 3679999997664 8889999998876544
No 77
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=32.03 E-value=2e+02 Score=21.52 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=11.3
Q ss_pred HHHHHHHHHHccCCCEEEEecC
Q 030179 67 EEKADKILSESQESNVAFLVVG 88 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~G 88 (181)
+++++...++.++++++++-+|
T Consensus 7 ~~IA~~A~~~I~~~~~Ifld~G 28 (161)
T PF00455_consen 7 RAIARKAASLIEDGDTIFLDSG 28 (161)
T ss_pred HHHHHHHHHhCCCCCEEEEECc
Confidence 3444444454455555555555
No 78
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=32.01 E-value=1.2e+02 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=19.0
Q ss_pred CEEEEecCCccccc--cHHHHHHHHHhCC
Q 030179 81 NVAFLVVGDPFGAT--THTDLVVRAKKLG 107 (181)
Q Consensus 81 ~V~~l~~GDP~~~~--~~~~l~~~~~~~g 107 (181)
+-++++.|||++.+ ...++++++++.+
T Consensus 138 ~~VilSGGDPl~~~~~~L~~ll~~l~~i~ 166 (321)
T TIGR03822 138 WEVILTGGDPLVLSPRRLGDIMARLAAID 166 (321)
T ss_pred cEEEEeCCCcccCCHHHHHHHHHHHHhCC
Confidence 56889999999864 3445667776543
No 79
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=31.71 E-value=1e+02 Score=26.69 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHHHHHHccCCCEEEEecCCcc-ccccHHHHHHHHHhCCCcEEEECCc
Q 030179 67 EEKADKILSESQESNVAFLVVGDPF-GATTHTDLVVRAKKLGIQVKAVHNA 116 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~-~~~~~~~l~~~~~~~g~~v~iiPGi 116 (181)
+...+.+++.++..+|.+.+-||-+ +-++...| ..++..|.+|+++=.+
T Consensus 64 ~~~ID~ai~LA~~~~vil~TfGDm~RVPGs~~SL-~~ara~GadVriVySp 113 (355)
T PF01924_consen 64 QGDIDAAIELAKRPGVILATFGDMMRVPGSRGSL-AEARAEGADVRIVYSP 113 (355)
T ss_dssp HHHHHHHHHHHTT--EEEEE-TTGGG---TT--H-HHHHHTT-EEEE-SSH
T ss_pred HHHHHHHHHHhCCCCeEEEeCcccccCCCCCCCH-HHHHhCCCCEEEEeCH
Confidence 3455677777777899999999987 44555444 5567788899997543
No 80
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.46 E-value=63 Score=19.51 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=23.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~ 30 (181)
++.+||.|..+...+..+..++|.++.+-+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v 32 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINV 32 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 367899998777678888999999886544
No 81
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=30.85 E-value=1.6e+02 Score=21.05 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.5
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCcc
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 117 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiS 117 (181)
-.++++-.|....+.....+.+.+++.|+++++-+=-.
T Consensus 59 peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~a 96 (117)
T cd05126 59 VEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEE 96 (117)
T ss_pred CCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHH
Confidence 36888889998776666678888999999999855433
No 82
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=30.69 E-value=1.7e+02 Score=22.38 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred HHHHHHHHHccC--CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEE
Q 030179 68 EKADKILSESQE--SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAV 113 (181)
Q Consensus 68 ~~~~~i~~~~~~--~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~ii 113 (181)
...+.+.+.+-+ .++++=. ..+| +....+++.+++.|+.++++
T Consensus 80 ~~~~~~~~~a~~~~~nii~E~tl~~~---~~~~~~~~~~k~~GY~v~l~ 125 (199)
T PF06414_consen 80 RLAEKLIEYAIENRYNIIFEGTLSNP---SKLRKLIREAKAAGYKVELY 125 (199)
T ss_dssp HHHHHHHHHHHHCT--EEEE--TTSS---HHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCh---hHHHHHHHHHHcCCceEEEE
Confidence 344555554433 3555422 2223 22333667888899888775
No 83
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=30.37 E-value=52 Score=27.23 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=30.0
Q ss_pred ccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 77 SQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 77 ~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
+.+++++++.+|==.---.+.=.++.+.+.|+++..+-|.|+
T Consensus 6 l~g~~igLVL~GGGaRG~ahiGVL~aLeE~gi~~d~v~GtSa 47 (269)
T cd07227 6 LCGQAIGLVLGGGGARGISHIGILQALEEAGIPIDAIGGTSI 47 (269)
T ss_pred hcCCCEEEEECCcHHHHHHHHHHHHHHHHcCCCccEEEEECH
Confidence 445788888877543212233367888999999999999996
No 84
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.26 E-value=67 Score=19.57 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=23.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKV 29 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv 29 (181)
++.+||.|..+...+..+..++|.++++=
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~ 31 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRIN 31 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCC
Confidence 46789999877778888999999988653
No 85
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=30.01 E-value=1.3e+02 Score=25.53 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=30.5
Q ss_pred EEEecCCcccc--ccHHHHH-HHHHhCCCcEEEECCcc--HHHHHHHcCCCcc
Q 030179 83 AFLVVGDPFGA--TTHTDLV-VRAKKLGIQVKAVHNAS--VMNAVGICGLQLY 130 (181)
Q Consensus 83 ~~l~~GDP~~~--~~~~~l~-~~~~~~g~~v~iiPGiS--s~~a~a~~g~~l~ 130 (181)
+++++||..+- +-+..++ +.|++.|++|-|||-+. +-..+.++|.|--
T Consensus 19 vilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPdw~~~~df~~lG~PrL 71 (302)
T PF08497_consen 19 VILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPDWRSPEDFKRLGRPRL 71 (302)
T ss_pred EEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHhCCCcE
Confidence 55778887764 2233344 56788899999987665 3344566666633
No 86
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=29.87 E-value=1.6e+02 Score=24.91 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=26.6
Q ss_pred EEEEecCCccccccHHHHHHHHHhCCCcEEEECC
Q 030179 82 VAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 115 (181)
Q Consensus 82 V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPG 115 (181)
.|+++.+-|..- +..+++.+++.|+++.+|+=
T Consensus 147 ~V~VtESRP~~e--G~~~ak~L~~~gI~~~~I~D 178 (301)
T COG1184 147 KVIVTESRPRGE--GRIMAKELRQSGIPVTVIVD 178 (301)
T ss_pred EEEEEcCCCcch--HHHHHHHHHHcCCceEEEec
Confidence 688889999876 56788999999999988873
No 87
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=29.44 E-value=1.5e+02 Score=24.36 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=25.4
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCC-cEEEEC
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGI-QVKAVH 114 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~-~v~iiP 114 (181)
+-+.++.|.|++......+++.+++.|+ ++.+.-
T Consensus 58 ~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~T 92 (302)
T TIGR02668 58 RKVKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTT 92 (302)
T ss_pred CEEEEECcccccccCHHHHHHHHHhCCCceEEEEc
Confidence 4456688999998888788888877776 565553
No 88
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=29.27 E-value=2.2e+02 Score=22.20 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=24.8
Q ss_pred CEEEEecCCccccccH-HHHHHHHHhCCCcEEEE-CC
Q 030179 81 NVAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAV-HN 115 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~-~~l~~~~~~~g~~v~ii-PG 115 (181)
..+.++.|+|++.... ..+++.+++.|+.+.+. .|
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 4566778999987654 46778888888776664 45
No 89
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=29.08 E-value=1.3e+02 Score=19.81 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=9.0
Q ss_pred HHHHHHHhCCCcEEEECCc
Q 030179 98 DLVVRAKKLGIQVKAVHNA 116 (181)
Q Consensus 98 ~l~~~~~~~g~~v~iiPGi 116 (181)
.+.+.++..|+.+++-..-
T Consensus 20 ~l~~~L~~~gi~v~~d~~~ 38 (94)
T PF03129_consen 20 ELANKLRKAGIRVELDDSD 38 (94)
T ss_dssp HHHHHHHHTTSEEEEESSS
T ss_pred HHHHHHHHCCCEEEEECCC
Confidence 3444445555555555433
No 90
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=29.04 E-value=2e+02 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=24.7
Q ss_pred CEEEEecCCccccccHHHHHHHHHh-CCC-cEEEE
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKK-LGI-QVKAV 113 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~-~g~-~v~ii 113 (181)
+.+.++.|+|++......+++.+.+ .|+ .+.+.
T Consensus 61 ~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~it 95 (334)
T TIGR02666 61 RKVRLTGGEPLLRKDLVELVARLAALPGIEDIALT 95 (334)
T ss_pred CEEEEECccccccCCHHHHHHHHHhcCCCCeEEEE
Confidence 5567889999998777777777765 567 56664
No 91
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=29.00 E-value=1.9e+02 Score=20.91 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=26.1
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhC--CCcEEEECCcc
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNAS 117 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~--g~~v~iiPGiS 117 (181)
....++..|||+.......+++.+.+. ++.+.+.-...
T Consensus 45 ~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~ 84 (204)
T cd01335 45 VEVVILTGGEPLLYPELAELLRRLKKELPGFEISIETNGT 84 (204)
T ss_pred ceEEEEeCCcCCccHhHHHHHHHHHhhCCCceEEEEcCcc
Confidence 466777899999887555666677665 66776664443
No 92
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=28.75 E-value=1e+02 Score=23.42 Aligned_cols=46 Identities=11% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHHHHHHHccCCCEEEEecCCc--cccccHHHHHHHHHhCCCcEEEE
Q 030179 68 EKADKILSESQESNVAFLVVGDP--FGATTHTDLVVRAKKLGIQVKAV 113 (181)
Q Consensus 68 ~~~~~i~~~~~~~~V~~l~~GDP--~~~~~~~~l~~~~~~~g~~v~ii 113 (181)
++.+.+.+.++.+.|+++-.||. ........++..++++|+++..+
T Consensus 140 ~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 140 SIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 44455555555567777775543 22223344556667777766543
No 93
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.73 E-value=4e+02 Score=23.33 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHc--c--CCCEEEEecC------Cccc------cc-cHHHHHHHHHhCCCcEEEECCc
Q 030179 66 VEEKADKILSES--Q--ESNVAFLVVG------DPFG------AT-THTDLVVRAKKLGIQVKAVHNA 116 (181)
Q Consensus 66 ~~~~~~~i~~~~--~--~~~V~~l~~G------DP~~------~~-~~~~l~~~~~~~g~~v~iiPGi 116 (181)
.+++.+.+...+ + .++.++++.| ||-= .| .+..+.+++.+.|.+|.++-|-
T Consensus 170 ~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 170 PEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 455555555443 2 2467888888 5532 13 4778888998899998877553
No 94
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.62 E-value=81 Score=19.56 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=25.1
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYI 31 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~ 31 (181)
+|.+||.|..+-..+..+..++|.+..+-+.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4789999997766788999999988776654
No 95
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.61 E-value=3.2e+02 Score=22.21 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=51.2
Q ss_pred HHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChH
Q 030179 73 ILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFY 151 (181)
Q Consensus 73 i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~ 151 (181)
+.+.+.+ ++|.+.-.|.- +....++...+...|..+.+.+.......... . +.+ +. .++..|..|......
T Consensus 133 ~~~~i~~A~~I~i~G~G~S--~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~-~--~~~-~D--l~I~iS~sG~t~~~~ 204 (292)
T PRK11337 133 AARFFYQARQRDLYGAGGS--AAIARDVQHKFLRIGVRCQAYDDAHIMLMSAA-L--LQE-GD--VVLVVSHSGRTSDVI 204 (292)
T ss_pred HHHHHHcCCeEEEEEecHH--HHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHh-c--CCC-CC--EEEEEeCCCCCHHHH
Confidence 3444444 77877777743 33445555666667888888776554332221 1 122 22 233345555443445
Q ss_pred HHHHHHhcCCCceEEEEcce
Q 030179 152 EKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 152 ~~i~~~~~~~~~tlvlld~~ 171 (181)
+.+......|..++.+++-.
T Consensus 205 ~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 205 EAVELAKKNGAKIICITNSY 224 (292)
T ss_pred HHHHHHHHCCCeEEEEeCCC
Confidence 56666677788888888754
No 96
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=28.48 E-value=1.3e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEE
Q 030179 69 KADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKA 112 (181)
Q Consensus 69 ~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~i 112 (181)
+.+.+.+.++.+.|+++-.+.+........++..++++|+++..
T Consensus 176 ~~~~v~~~~~~g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvt 219 (224)
T TIGR02884 176 AYKQIMKKIHPGAILLLHAVSKDNAEALDKIIKDLKEQGYTFKS 219 (224)
T ss_pred HHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 34444444444566666655443333444455666667766544
No 97
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.30 E-value=1.6e+02 Score=23.35 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=22.6
Q ss_pred CEEEEecCCccccccH-HHHHHHHHhCCCcEEEE
Q 030179 81 NVAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAV 113 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~-~~l~~~~~~~g~~v~ii 113 (181)
.-+-++.|+|+++..+ ..+++.+++.|+.+.+.
T Consensus 40 gGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~le 73 (213)
T PRK10076 40 GGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIE 73 (213)
T ss_pred CEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEE
Confidence 4566778888877654 45667777777776664
No 98
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=28.23 E-value=1e+02 Score=24.31 Aligned_cols=34 Identities=29% Similarity=0.178 Sum_probs=22.9
Q ss_pred CEEEEecCC--CCccchhHHHHHHHh--hCCeEEEcCc
Q 030179 1 MLYIIGLGL--GDERDITLRGLEAVK--KCDKVYIEAY 34 (181)
Q Consensus 1 ~l~iVG~Gp--G~~~~lT~~A~~~L~--~advv~~~~~ 34 (181)
+|.+||.|. -+...+..+..+... ++.+++.+..
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA 38 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAA 38 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCC
Confidence 578999995 344556666666663 5678887654
No 99
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=28.22 E-value=98 Score=23.85 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=40.9
Q ss_pred cCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEE--CCccHHHHHHHcCCCccc------CCceeEEecccCCCCCCC
Q 030179 78 QESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV--HNASVMNAVGICGLQLYR------FGETVSIPFFTETWRPGS 149 (181)
Q Consensus 78 ~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~ii--PGiSs~~a~a~~g~~l~~------~~~~~~v~~~~~~~~~~~ 149 (181)
++|+|+++=.| +-+......|++.|++|.+- +|-.|..-+-..|+.... ..+.+-+..+ +..-+ .
T Consensus 3 ~~k~IAViGyG-----sQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~P-D~~q~-~ 75 (165)
T PF07991_consen 3 KGKTIAVIGYG-----SQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLP-DEVQP-E 75 (165)
T ss_dssp CTSEEEEES-S-----HHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S--HHHHH-H
T ss_pred CCCEEEEECCC-----hHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCC-hHHHH-H
Confidence 45778887777 44556667788887766654 333344434445555433 1222222221 21111 1
Q ss_pred hH-HHHHHHhcCCCceEEEE
Q 030179 150 FY-EKIKRNRSLGLHTLCLL 168 (181)
Q Consensus 150 ~~-~~i~~~~~~~~~tlvll 168 (181)
.| +.+.++++.+ .||+|.
T Consensus 76 vy~~~I~p~l~~G-~~L~fa 94 (165)
T PF07991_consen 76 VYEEEIAPNLKPG-ATLVFA 94 (165)
T ss_dssp HHHHHHHHHS-TT--EEEES
T ss_pred HHHHHHHhhCCCC-CEEEeC
Confidence 24 6778888776 778775
No 100
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=27.83 E-value=1.5e+02 Score=25.88 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecCCccccccH--HHHHHHHHh
Q 030179 64 EMVEEKADKILSESQESNVAFLVVGDPFGATTH--TDLVVRAKK 105 (181)
Q Consensus 64 ~~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~--~~l~~~~~~ 105 (181)
+.|++..++|.+. -+=+=++++.|||+.-+.. .+++.++++
T Consensus 144 ~~~~~al~YIa~h-PeI~eVllSGGDPL~ls~~~L~~ll~~L~~ 186 (369)
T COG1509 144 EEWDKALDYIAAH-PEIREVLLSGGDPLSLSDKKLEWLLKRLRA 186 (369)
T ss_pred HHHHHHHHHHHcC-chhheEEecCCCccccCHHHHHHHHHHHhc
Confidence 3455555555431 1224588999999987754 345566654
No 101
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=27.81 E-value=2.2e+02 Score=21.14 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=33.9
Q ss_pred HHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCcc
Q 030179 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNAS 117 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiS 117 (181)
+++.+.|.+....-.-+.++.|+ +.+.-...+++.+++.|+++.+.-|-+
T Consensus 49 eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 49 EYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred HHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44555554432123567788999 666656677888888999999888844
No 102
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=27.65 E-value=76 Score=19.59 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=24.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYI 31 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~ 31 (181)
++.+||.|.-+...+..+..++|.+.++=+.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 3789999996666788899999988876553
No 103
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=27.50 E-value=2.5e+02 Score=21.86 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHccC-CCEEEEecCCcccccc-HH------HHHHHHHhCCCcEEEECC
Q 030179 66 VEEKADKILSESQE-SNVAFLVVGDPFGATT-HT------DLVVRAKKLGIQVKAVHN 115 (181)
Q Consensus 66 ~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~-~~------~l~~~~~~~g~~v~iiPG 115 (181)
..+..+.+.+.+.+ +--.++..||=.=.+. .. ..++.+.+.++++-++||
T Consensus 20 ~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~G 77 (214)
T cd07399 20 FDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAG 77 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 44455566665544 4345677898654444 21 234445546788889998
No 104
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.45 E-value=75 Score=20.44 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHhCCCcEEEECCccHHHH
Q 030179 101 VRAKKLGIQVKAVHNASVMNA 121 (181)
Q Consensus 101 ~~~~~~g~~v~iiPGiSs~~a 121 (181)
+.+++.|++++++|=+..+++
T Consensus 19 k~lk~~gi~~~liP~P~~i~~ 39 (73)
T PF11823_consen 19 KLLKKNGIPVRLIPTPREISA 39 (73)
T ss_pred HHHHHCCCcEEEeCCChhccC
Confidence 457889999999999998864
No 105
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=27.35 E-value=1.2e+02 Score=26.31 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=34.1
Q ss_pred HHHHHHHHHHccCCCEEEEecCCcc-ccccHHHHHHHHHhCCCcEEEECC
Q 030179 67 EEKADKILSESQESNVAFLVVGDPF-GATTHTDLVVRAKKLGIQVKAVHN 115 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~-~~~~~~~l~~~~~~~g~~v~iiPG 115 (181)
++..+.+++++...+|.+.+-||=+ +-++...| ..+++.|-+|+++=.
T Consensus 69 ~~~ID~ai~La~~~~vi~~TfGDmlRVPGs~~SL-~~ara~GadVriVYS 117 (364)
T PRK15062 69 MGRIDAAIELASRPGVILCTFGDMLRVPGSKGSL-LEAKAEGADVRIVYS 117 (364)
T ss_pred HHHHHHHHHHhCCCCeEEEeccccccCCCCcCCH-HHHHhCCCCEEEEeC
Confidence 3445667777777799999999976 44554444 556778889999743
No 106
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=27.29 E-value=2.7e+02 Score=20.87 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEeccc
Q 030179 63 REMVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFT 142 (181)
Q Consensus 63 ~~~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~ 142 (181)
.+.+++.++.|.+ .++|.++-.|.-. ....++...+...|.++..+.... .+.-..+. .++..|
T Consensus 20 ~~~l~~~~~~i~~---a~~I~i~G~G~S~--~~A~~~~~~l~~~g~~~~~~~~~~---------~~~~~~~D--~vI~iS 83 (179)
T cd05005 20 EEELDKLISAILN---AKRIFVYGAGRSG--LVAKAFAMRLMHLGLNVYVVGETT---------TPAIGPGD--LLIAIS 83 (179)
T ss_pred HHHHHHHHHHHHh---CCeEEEEecChhH--HHHHHHHHHHHhCCCeEEEeCCCC---------CCCCCCCC--EEEEEc
Confidence 3445555554432 3788888788543 344555566666677777764321 11111111 334456
Q ss_pred CCCCCCChHHHHHHHhcCCCceEEEEcce
Q 030179 143 ETWRPGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
..|......+.+......|..++.+++-.
T Consensus 84 ~sG~t~~~i~~~~~ak~~g~~iI~IT~~~ 112 (179)
T cd05005 84 GSGETSSVVNAAEKAKKAGAKVVLITSNP 112 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 66655444666666777788888888743
No 107
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=27.27 E-value=54 Score=27.78 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=17.0
Q ss_pred chhHHHHHHHhhCCeEEEc
Q 030179 14 DITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 14 ~lT~~A~~~L~~advv~~~ 32 (181)
..+++|+++|++||+|++.
T Consensus 164 ~~~~~a~~AI~~AD~Iv~g 182 (308)
T cd07187 164 KANPEALEAIEEADLIVYG 182 (308)
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 5789999999999999874
No 108
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=27.23 E-value=1.1e+02 Score=21.69 Aligned_cols=8 Identities=50% Similarity=0.443 Sum_probs=3.7
Q ss_pred cCCccccc
Q 030179 87 VGDPFGAT 94 (181)
Q Consensus 87 ~GDP~~~~ 94 (181)
.|||.|.+
T Consensus 42 ~GDPTfAG 49 (107)
T PRK14717 42 NGDPTFAG 49 (107)
T ss_pred cCCCcccc
Confidence 44444444
No 109
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=26.77 E-value=92 Score=26.18 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=30.2
Q ss_pred HHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 75 SESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 75 ~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
..+.+++++++.+|==.---.+.-.++.+.+.|+++..+-|.|+
T Consensus 9 r~l~~~~~gLvL~GGG~RG~ahiGvL~aLee~gi~~d~v~GtSa 52 (306)
T cd07225 9 RVLTGNSIALVLGGGGARGCAHIGVIKALEEAGIPVDMVGGTSI 52 (306)
T ss_pred HHhcCCCEEEEECChHHHHHHHHHHHHHHHHcCCCCCEEEEECH
Confidence 33455678887766432211233367888999999999999997
No 110
>PRK00861 putative lipid kinase; Reviewed
Probab=26.69 E-value=2.6e+02 Score=22.90 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=32.1
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQ 128 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~ 128 (181)
.++++++.|| |+..+.+..+...+.++-++|+=|.=..+-.+|+|
T Consensus 58 ~d~vv~~GGD----GTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~ 102 (300)
T PRK00861 58 AELIIASGGD----GTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIP 102 (300)
T ss_pred CCEEEEECCh----HHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCC
Confidence 4788899999 77777777776667889999996653333335554
No 111
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=26.41 E-value=72 Score=26.94 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=18.9
Q ss_pred cCCCCccchhHHHHHHHhhCCeEEE
Q 030179 7 LGLGDERDITLRGLEAVKKCDKVYI 31 (181)
Q Consensus 7 ~GpG~~~~lT~~A~~~L~~advv~~ 31 (181)
.||.+ -.-|++++++|++||+|+.
T Consensus 165 ~g~e~-a~a~peal~AI~~AD~IIl 188 (297)
T TIGR01819 165 RGAEK-ASIAPKVLEAIRKEDNILI 188 (297)
T ss_pred CCCCC-CCCCHHHHHHHHhCCEEEE
Confidence 35644 3589999999999998765
No 112
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.30 E-value=3.7e+02 Score=22.06 Aligned_cols=91 Identities=10% Similarity=0.137 Sum_probs=57.1
Q ss_pred HHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHH-HHHcCCCcccCCceeEEecccCCCCCC
Q 030179 71 DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA-VGICGLQLYRFGETVSIPFFTETWRPG 148 (181)
Q Consensus 71 ~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a-~a~~g~~l~~~~~~~~v~~~~~~~~~~ 148 (181)
+++.+.+.+ ++|.+.-.|--+ ....++...|..-|.++..+.+...+.. ++.++ ..+ .++..|..|...
T Consensus 121 ~~av~~L~~A~rI~~~G~g~S~--~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~----~~D---v~i~iS~sG~t~ 191 (281)
T COG1737 121 ERAVELLAKARRIYFFGLGSSG--LVASDLAYKLMRIGLNVVALSDTHGQLMQLALLT----PGD---VVIAISFSGYTR 191 (281)
T ss_pred HHHHHHHHcCCeEEEEEechhH--HHHHHHHHHHHHcCCceeEecchHHHHHHHHhCC----CCC---EEEEEeCCCCcH
Confidence 344444444 777777665433 3345566677788999999999887653 23222 111 133345555555
Q ss_pred ChHHHHHHHhcCCCceEEEEcc
Q 030179 149 SFYEKIKRNRSLGLHTLCLLGG 170 (181)
Q Consensus 149 ~~~~~i~~~~~~~~~tlvlld~ 170 (181)
...+.......+|-.++.++|-
T Consensus 192 e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 192 EIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHHHHHHHHCCCcEEEEcCC
Confidence 5567777788888888888876
No 113
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=25.95 E-value=91 Score=19.33 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCcEEEECCcc
Q 030179 97 TDLVVRAKKLGIQVKAVHNAS 117 (181)
Q Consensus 97 ~~l~~~~~~~g~~v~iiPGiS 117 (181)
..+.+..++. .+.++||+-
T Consensus 44 ~~~~~~~~~~--gi~~i~G~E 62 (67)
T smart00481 44 VEFYKAAKKA--GIKPIIGLE 62 (67)
T ss_pred HHHHHHHHHc--CCeEEEEEE
Confidence 3444555555 477899974
No 114
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=25.81 E-value=2.3e+02 Score=21.70 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=5.9
Q ss_pred CEEEEecCCc
Q 030179 81 NVAFLVVGDP 90 (181)
Q Consensus 81 ~V~~l~~GDP 90 (181)
++++.++-+|
T Consensus 87 ~a~i~~~sap 96 (164)
T PF11965_consen 87 PAMIIFESAP 96 (164)
T ss_pred CEEEEEcCHH
Confidence 6666665544
No 115
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.43 E-value=2.3e+02 Score=23.35 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.5
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECC
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHN 115 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPG 115 (181)
..+++....|..-| ..+++++.+.|+++.++|-
T Consensus 110 ~~V~v~ESrP~~eG--~~~a~~L~~~GI~vtli~D 142 (253)
T PRK06372 110 KSVYILESRPMLEG--IDMAKLLVKSGIDVVLLTD 142 (253)
T ss_pred CEEEEecCCCchHH--HHHHHHHHHCCCCEEEEeh
Confidence 46677777887644 4677888888888888874
No 116
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=25.19 E-value=1.6e+02 Score=24.67 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=26.0
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEE
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV 113 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~ii 113 (181)
..++.+..|+|++.--...+++.+.+.|..+.+.
T Consensus 73 ~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~ 106 (318)
T TIGR03470 73 APVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLC 106 (318)
T ss_pred CCEEEEeCccccccccHHHHHHHHHHcCCeEEEe
Confidence 3567778999999877777888887777666555
No 117
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=25.00 E-value=2.4e+02 Score=19.63 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=27.5
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHH
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~ 119 (181)
++.++-.|.. ..-....+.+.+++.|+.+|+-+=-++.
T Consensus 55 e~liiGtG~~-~~~~~~~~~~~l~~~GI~ve~m~T~~Ac 92 (110)
T PF04430_consen 55 EVLIIGTGKR-QLFLPPELREYLRKKGIGVEVMDTPAAC 92 (110)
T ss_dssp SEEEEEETTS--SECTHHHHHHHHTTT-EEEEE-HHHHH
T ss_pred cEEEEccCCc-cccCCHHHHHHHHHcCCeEEEECHHHHH
Confidence 7899999988 4445667888999999999997644443
No 118
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=24.86 E-value=1.3e+02 Score=26.21 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=34.2
Q ss_pred HHHHHHHHHHccCCCEEEEecCCcc-ccccHHHHHHHHHhCCCcEEEECC
Q 030179 67 EEKADKILSESQESNVAFLVVGDPF-GATTHTDLVVRAKKLGIQVKAVHN 115 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~-~~~~~~~l~~~~~~~g~~v~iiPG 115 (181)
++..+.+++++...+|.+.+-||-+ +-++...| ..+++.|.+|+++=.
T Consensus 75 ~~~ID~ai~LA~~~~vii~TfGDmlRVPGs~~SL-~~ara~GadVriVYS 123 (369)
T TIGR00075 75 MERIDEAIELATIPEIIFCTFGDMMRVPGSGGSL-LQARAEGADVRIVYS 123 (369)
T ss_pred HHHHHHHHHHhCCCCeEEEecchhccCCCCCCCH-HHHHhCCCCEEEEeC
Confidence 3455667776666899999999976 44555444 556778889999743
No 119
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.58 E-value=1.1e+02 Score=21.88 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=20.2
Q ss_pred ecCCCCccchhHHHHHHHhh----CCeEEEcCc
Q 030179 6 GLGLGDERDITLRGLEAVKK----CDKVYIEAY 34 (181)
Q Consensus 6 G~GpG~~~~lT~~A~~~L~~----advv~~~~~ 34 (181)
...+.+++.+|.+..+.+.. -|+++....
T Consensus 31 ~W~~~~~~~l~~~~l~~l~~~~~~peiliiGtG 63 (114)
T cd05125 31 SWNVSSFEDITEESLSLFELLEPRPEILVIGTG 63 (114)
T ss_pred ccCCCChhhCCHHHHHHHHhccCCCCEEEEccC
Confidence 34566778899998888874 457766543
No 120
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=23.80 E-value=68 Score=27.22 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.9
Q ss_pred chhHHHHHHHhhCCeEEEc
Q 030179 14 DITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 14 ~lT~~A~~~L~~advv~~~ 32 (181)
..+.+++++|++||+|++.
T Consensus 161 ~a~~~al~AI~~ADlIvlg 179 (310)
T TIGR01826 161 PALREAVEAIREADLIILG 179 (310)
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 5789999999999999874
No 121
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.69 E-value=3.2e+02 Score=20.43 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHH------hCCCcEEEECCccH-HHHH-HHcCC------
Q 030179 63 REMVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAK------KLGIQVKAVHNASV-MNAV-GICGL------ 127 (181)
Q Consensus 63 ~~~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~------~~g~~v~iiPGiSs-~~a~-a~~g~------ 127 (181)
.+..++.++.+.+..++ ++|.+.-.|.-.. ...++...+. +.|.++..+++-.+ +.+. ...+.
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~--~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAA--DAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH--HHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHH
Confidence 34566677777665444 6777777774322 2222232332 23567777664333 3322 11111
Q ss_pred ----CcccCCceeEEecccCCCCCCChHHHHHHHhcCCCceEEEEcce
Q 030179 128 ----QLYRFGETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 128 ----~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
...+.+ .++..|..|......+.+.....+|..++.+++..
T Consensus 94 ~~~~~~~~~D---v~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 94 QVEALGQPGD---VLIGISTSGNSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred HHHHhCCCCC---EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 122222 23344555555455677777778888888888653
No 122
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=23.44 E-value=1.2e+02 Score=25.37 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHh--hCCeEEEcCcccccccccccchhhhhHHHhCCccccC--ChHHHHH-HHHHHHHHccCCCEEEEecCCcc--
Q 030179 19 GLEAVK--KCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALA--DREMVEE-KADKILSESQESNVAFLVVGDPF-- 91 (181)
Q Consensus 19 A~~~L~--~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~V~~l~~GDP~-- 91 (181)
-.++++ ++|++++-....-+ +.++.++.+.....++++|. +.....| ..+.+.+. -++ -+++.+|-|+
T Consensus 97 L~e~i~~v~ptvlIG~S~~~g~---ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G-~ai~ATGsPf~p 171 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVGGA---FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKW-TDG-RALFASGSPFPP 171 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCCCC---CCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHh-hcC-CEEEEeCCCCCC
Confidence 347788 88999985432211 34554455554446787762 2211112 23333332 123 3577888653
Q ss_pred -ccccHHHHHHHHHhCCCcEEEECCcc
Q 030179 92 -GATTHTDLVVRAKKLGIQVKAVHNAS 117 (181)
Q Consensus 92 -~~~~~~~l~~~~~~~g~~v~iiPGiS 117 (181)
.|..-.+. ..+.=++-+.|||-
T Consensus 172 v~~~Gr~~~----p~Q~NN~~iFPGig 194 (279)
T cd05312 172 VEYNGKTYV----PGQGNNAYIFPGIG 194 (279)
T ss_pred eeeCCeEec----CCCcceeeeccchh
Confidence 33211111 11122577888853
No 123
>PRK06847 hypothetical protein; Provisional
Probab=23.09 E-value=64 Score=27.04 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=20.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAY 34 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~ 34 (181)
.|.|||.||++ ++....-.-+..++++++..
T Consensus 6 ~V~IVGaG~aG---l~~A~~L~~~g~~v~v~E~~ 36 (375)
T PRK06847 6 KVLIVGGGIGG---LSAAIALRRAGIAVDLVEID 36 (375)
T ss_pred eEEEECCCHHH---HHHHHHHHhCCCCEEEEecC
Confidence 37899999986 33333222245789998765
No 124
>PRK11914 diacylglycerol kinase; Reviewed
Probab=23.04 E-value=2.7e+02 Score=22.94 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQ 128 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~ 128 (181)
-++++++.|| |+..+.+..+...++++-++|+=|.=..+-.+|+|
T Consensus 65 ~d~vvv~GGD----GTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~ 109 (306)
T PRK11914 65 TDALVVVGGD----GVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIP 109 (306)
T ss_pred CCEEEEECCc----hHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCC
Confidence 3788999999 66667777766667889999975543222334444
No 125
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.98 E-value=1.6e+02 Score=20.70 Aligned_cols=9 Identities=11% Similarity=0.608 Sum_probs=4.7
Q ss_pred CCEEEEecC
Q 030179 80 SNVAFLVVG 88 (181)
Q Consensus 80 ~~V~~l~~G 88 (181)
+++++++.|
T Consensus 10 ~di~iia~G 18 (124)
T PF02780_consen 10 ADITIIAYG 18 (124)
T ss_dssp SSEEEEEET
T ss_pred CCEEEEeeh
Confidence 355555555
No 126
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=22.93 E-value=1.2e+02 Score=17.72 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=22.4
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~ 30 (181)
+|.++|.|-.+...+..+..++|.+.++=+
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v 31 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINI 31 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcE
Confidence 478899888555567788999998776544
No 127
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=22.89 E-value=83 Score=27.06 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=20.0
Q ss_pred EEEEecCCCCccchhHHHHHHHhh--CCeEEEcCcc
Q 030179 2 LYIIGLGLGDERDITLRGLEAVKK--CDKVYIEAYT 35 (181)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~--advv~~~~~~ 35 (181)
+.|||.||.+. -|...+++ ++|++++...
T Consensus 6 VvIVGaGPAGs-----~aA~~la~~G~~VlvlEk~~ 36 (396)
T COG0644 6 VVIVGAGPAGS-----SAARRLAKAGLDVLVLEKGS 36 (396)
T ss_pred EEEECCchHHH-----HHHHHHHHcCCeEEEEecCC
Confidence 68999999873 23344444 4899998653
No 128
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=22.40 E-value=4.6e+02 Score=24.31 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=31.8
Q ss_pred hHHHH-HHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 63 REMVE-EKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 63 ~~~~~-~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
.+.|. +....|....+.+.+. . .|+....+.+.+.+.|++++-.||...
T Consensus 181 p~~W~~~~~~~l~~~~~~~~~~-~------t~t~a~~vr~~l~~~GF~v~~~~~~g~ 230 (662)
T PRK01747 181 PDMWSPNLFNALARLARPGATL-A------TFTSAGFVRRGLQEAGFTVRKVKGFGR 230 (662)
T ss_pred hhhccHHHHHHHHHHhCCCCEE-E------EeehHHHHHHHHHHcCCeeeecCCCch
Confidence 34553 4555555554443211 1 466777788889999999999999754
No 129
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=22.35 E-value=1.2e+02 Score=25.30 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=20.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~ 32 (181)
+|.|||.|.|. .+.++.+...-..+++++
T Consensus 79 ~VLiiGgGdG~---tlRevlkh~~ve~i~~VE 107 (282)
T COG0421 79 RVLIIGGGDGG---TLREVLKHLPVERITMVE 107 (282)
T ss_pred eEEEECCCccH---HHHHHHhcCCcceEEEEE
Confidence 47899999985 566666666556666665
No 130
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=22.08 E-value=1.1e+02 Score=19.57 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=24.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~ 30 (181)
++.++|.|..+...+..+..++|+++++-+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v 32 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSV 32 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeE
Confidence 467888887776778999999999887654
No 131
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=22.02 E-value=4.2e+02 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecCCccc
Q 030179 64 EMVEEKADKILSESQESNVAFLVVGDPFG 92 (181)
Q Consensus 64 ~~~~~~~~~i~~~~~~~~V~~l~~GDP~~ 92 (181)
.+.++..+.+.+.++.+++++|+++...|
T Consensus 398 ~~le~Av~~a~~~a~~gd~VLLSPacASf 426 (448)
T COG0771 398 ETLEEAVQLARELAQPGDVVLLSPACASF 426 (448)
T ss_pred CcHHHHHHHHHHhhcCCCeEEEcccccch
Confidence 34566667777766778899999998876
No 132
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=21.90 E-value=1.8e+02 Score=22.99 Aligned_cols=44 Identities=27% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEE
Q 030179 69 KADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAV 113 (181)
Q Consensus 69 ~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~ii 113 (181)
.++.|.+.++++..+|++-|---+.|.. -+++.++++|+.|+-|
T Consensus 216 ~~~~i~~~l~~~~~~fvvVGa~HL~G~~-gvl~lLr~~Gy~V~~v 259 (259)
T PF01963_consen 216 WAEKIEELLKEGGTVFVVVGAGHLPGED-GVLDLLRKKGYTVEPV 259 (259)
T ss_pred HHHHHHHHHhcCCCEEEEEcchhccchh-hHHHHHHhCCceeecC
Confidence 3444555555543444444443355544 3668889999888753
No 133
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=21.77 E-value=68 Score=26.04 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=15.2
Q ss_pred EEEecCCccccccHHHHHHHHHhC
Q 030179 83 AFLVVGDPFGATTHTDLVVRAKKL 106 (181)
Q Consensus 83 ~~l~~GDP~~~~~~~~l~~~~~~~ 106 (181)
.+|.+|||+ +..++.+.+-+.
T Consensus 16 ~VLmPGDPl---RAK~iAetfLe~ 36 (236)
T COG0813 16 VVLMPGDPL---RAKYIAETFLEN 36 (236)
T ss_pred eeecCCCCc---hHHHHHHHHHhh
Confidence 567899998 566777766543
No 134
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.65 E-value=3.7e+02 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCccc
Q 030179 66 VEEKADKILSESQESNVAFLVVGDPFG 92 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~~GDP~~ 92 (181)
.++..+.+.+.++.++++++++|.+.|
T Consensus 355 ~e~av~~~~~~~~~gdvVLlSPa~aSf 381 (401)
T PRK03815 355 LEKAVEEIKKVLKQNEVALLSPAAASL 381 (401)
T ss_pred HHHHHHHHHHhCCCCCEEEeChhhhcc
Confidence 344444444444556777777777764
No 135
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.59 E-value=1.2e+02 Score=18.20 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=22.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~ 30 (181)
++.+||.|-.+...+..+..++|.++.+-+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v 32 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINI 32 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCE
Confidence 467899887665667778889998876544
No 136
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=21.55 E-value=81 Score=26.75 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=17.4
Q ss_pred cchhHHHHHHHhhCCeEEEc
Q 030179 13 RDITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 13 ~~lT~~A~~~L~~advv~~~ 32 (181)
-..+++++++|++||.|++.
T Consensus 162 ~~~~~~~l~AI~~ADlIvlg 181 (309)
T cd07044 162 ASPSREVLEAIEKADNIVIG 181 (309)
T ss_pred CCCCHHHHHHHHhCCEEEEC
Confidence 35889999999999998874
No 137
>PRK13057 putative lipid kinase; Reviewed
Probab=21.46 E-value=3.5e+02 Score=22.03 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=27.6
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
-++++++.|| ||..+.+..+...+.++-++|+=|.
T Consensus 51 ~d~iiv~GGD----GTv~~v~~~l~~~~~~lgiiP~GT~ 85 (287)
T PRK13057 51 VDLVIVGGGD----GTLNAAAPALVETGLPLGILPLGTA 85 (287)
T ss_pred CCEEEEECch----HHHHHHHHHHhcCCCcEEEECCCCc
Confidence 4788899999 7777777777666788999997554
No 138
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=21.46 E-value=89 Score=25.99 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=11.6
Q ss_pred HHHHhhCCeEEEcCc
Q 030179 20 LEAVKKCDKVYIEAY 34 (181)
Q Consensus 20 ~~~L~~advv~~~~~ 34 (181)
...++.||+|++...
T Consensus 59 ~~~~~~aD~VivavP 73 (279)
T COG0287 59 AEAAAEADLVIVAVP 73 (279)
T ss_pred hhhcccCCEEEEecc
Confidence 677888999998644
No 139
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.44 E-value=1.4e+02 Score=20.92 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=16.5
Q ss_pred CCCccchhHHHHHHHhh---CCeEEEcC
Q 030179 9 LGDERDITLRGLEAVKK---CDKVYIEA 33 (181)
Q Consensus 9 pG~~~~lT~~A~~~L~~---advv~~~~ 33 (181)
+..++.+|.+..+.+.. -|+++...
T Consensus 33 ~~~~~~l~~~~l~~~~~~~~peiliiGT 60 (109)
T cd00248 33 GTSLSDLDPEALLPLLAEDRPDILLIGT 60 (109)
T ss_pred CcCcccCCHHHHHHHHhhCCCCEEEEcC
Confidence 34556688888877775 46776654
No 140
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.42 E-value=1.3e+02 Score=17.69 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=22.1
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEE
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVY 30 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~ 30 (181)
.+.++|.|..+...+..+..++|.++.+=+
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v 31 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINI 31 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCE
Confidence 367888888666667778888888876443
No 141
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=21.39 E-value=3.3e+02 Score=23.02 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=34.5
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCC-CcEEEECCccHHHHHHHcC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLG-IQVKAVHNASVMNAVGICG 126 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g-~~v~iiPGiSs~~a~a~~g 126 (181)
..|++.-+|-|.+|-.-..+++.+++.| +.+-++-.=|--.....+.
T Consensus 81 d~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~ 128 (296)
T COG0731 81 DHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELK 128 (296)
T ss_pred CEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc
Confidence 5788888999999999999999999988 5666654444333333333
No 142
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=21.31 E-value=2.2e+02 Score=22.51 Aligned_cols=35 Identities=17% Similarity=0.051 Sum_probs=24.9
Q ss_pred EEEEecCCccccccH-HHHHHHHHhCCCcEEEE-CCc
Q 030179 82 VAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAV-HNA 116 (181)
Q Consensus 82 V~~l~~GDP~~~~~~-~~l~~~~~~~g~~v~ii-PGi 116 (181)
.+.++.|+|++.... ..+++.+++.|+.+.+. .|.
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 455688999987654 36778888888877665 354
No 143
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.16 E-value=1.1e+02 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
|++++..+|-...|-. .++++.+++.|.+|+++.--++
T Consensus 1 k~I~lgvtGs~~a~~~-~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 1 KKILLAVTGSIAAYKA-ADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred CEEEEEEcCHHHHHHH-HHHHHHHHHCCCEEEEEEChHH
Confidence 3566666776655532 2556666666667666654444
No 144
>PRK05473 hypothetical protein; Provisional
Probab=21.04 E-value=1e+02 Score=21.12 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=12.3
Q ss_pred CEEEEecCCccccccH
Q 030179 81 NVAFLVVGDPFGATTH 96 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~ 96 (181)
-|+++.||||..=+++
T Consensus 42 iVGYllSGDPaYItsh 57 (86)
T PRK05473 42 IVGYLLSGDPAYIPRH 57 (86)
T ss_pred HHhhhccCCCCccCCc
Confidence 4899999999755544
No 145
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=20.77 E-value=3e+02 Score=22.42 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=24.2
Q ss_pred CEEEEecCCccccccH-HHHHHHHHhCCCcEEEE
Q 030179 81 NVAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAV 113 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~-~~l~~~~~~~g~~v~ii 113 (181)
..+.++.|+|++.... ..+++.+++.|+.+.+.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~ 160 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVE 160 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeee
Confidence 3456778999987765 46778888888776664
No 146
>PRK13337 putative lipid kinase; Reviewed
Probab=20.70 E-value=4.3e+02 Score=21.70 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=28.9
Q ss_pred CCEEEEecCCccccccHHHHHHHHHh--CCCcEEEECCccHHHHHHHcCCC
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKK--LGIQVKAVHNASVMNAVGICGLQ 128 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~--~g~~v~iiPGiSs~~a~a~~g~~ 128 (181)
-++++++.|| |+....+..+.. ...++-++|+=|.=..+-.+|+|
T Consensus 58 ~d~vvv~GGD----GTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~ 104 (304)
T PRK13337 58 FDLVIAAGGD----GTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVP 104 (304)
T ss_pred CCEEEEEcCC----CHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCC
Confidence 4789999999 666666666543 23578999976653333234444
No 147
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.57 E-value=5.7e+02 Score=22.21 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=19.9
Q ss_pred EecCCCCccchhHHHHHHHhh--CCeEEEcC
Q 030179 5 IGLGLGDERDITLRGLEAVKK--CDKVYIEA 33 (181)
Q Consensus 5 VG~GpG~~~~lT~~A~~~L~~--advv~~~~ 33 (181)
||.|.|-...=...+.+.++. -|+++++.
T Consensus 1 Ig~~sGf~gD~~~a~~~l~~~g~~d~l~~d~ 31 (362)
T PF07287_consen 1 IGNGSGFWGDRPDAAVRLARGGDVDYLVGDY 31 (362)
T ss_pred CeeecccccCcHHHHHHHHhcCCCCEEEEec
Confidence 567777776667777777764 46777753
No 148
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=20.46 E-value=1.3e+02 Score=22.27 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=23.0
Q ss_pred HHHHHHHHHHccCC-CEEEEecC-CccccccHHHHHHH-HHhCCCcEEEECCccHH
Q 030179 67 EEKADKILSESQES-NVAFLVVG-DPFGATTHTDLVVR-AKKLGIQVKAVHNASVM 119 (181)
Q Consensus 67 ~~~~~~i~~~~~~~-~V~~l~~G-DP~~~~~~~~l~~~-~~~~g~~v~iiPGiSs~ 119 (181)
++..+++..+++.+ .++.+.-| ++.-.-+...++++ +... .+.++.|+|..
T Consensus 83 ~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--~~~~lsGP~~A 136 (157)
T PF01210_consen 83 REVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP--RIAVLSGPSFA 136 (157)
T ss_dssp HHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--GEEEEESS--H
T ss_pred HHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc--ceEEeeCccHH
Confidence 34455555555554 44444445 33333333344433 3222 48888888754
No 149
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.30 E-value=2.3e+02 Score=18.64 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=21.2
Q ss_pred cCCccccccHHHHHHHHHhCCCcEEEEC
Q 030179 87 VGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (181)
Q Consensus 87 ~GDP~~~~~~~~l~~~~~~~g~~v~iiP 114 (181)
.|.|.-.+....+.+.+.+.|++++++|
T Consensus 9 ~~~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 9 TRMLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 4555555666778888888999999996
No 150
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=20.30 E-value=99 Score=21.37 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=22.7
Q ss_pred ccccccHHHHHHHHHhCCCcEEEECCccHHHH
Q 030179 90 PFGATTHTDLVVRAKKLGIQVKAVHNASVMNA 121 (181)
Q Consensus 90 P~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a 121 (181)
|.+|+....+...+.++ +++|+-|=++++.
T Consensus 33 Pt~~~~~pl~R~IlirE--~I~IVHgH~a~S~ 62 (90)
T PF08288_consen 33 PTLFGSFPLLRNILIRE--RIDIVHGHQAFST 62 (90)
T ss_pred HHHHHhhHHHHHHHHHc--CeeEEEeehhhhH
Confidence 77888887776666554 7999999888764
No 151
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=20.09 E-value=4.3e+02 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=17.1
Q ss_pred CCEEEEecCCccccccHHHHHHHHHh-CCCcEE
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKK-LGIQVK 111 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~-~g~~v~ 111 (181)
-+|.+|+.--.+.-+.-.+..+.+++ .|+++-
T Consensus 140 pRv~iLVLAGslMGGkIteaVk~lr~~hgI~VI 172 (218)
T COG1707 140 PRVGILVLAGSLMGGKITEAVKELREEHGIPVI 172 (218)
T ss_pred ccceeEEEecccccchHHHHHHHHHHhcCCeEE
Confidence 46777663334444545555566655 355543
Done!