Query 030179
Match_columns 181
No_of_seqs 178 out of 1537
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z6r_A Diphthine synthase; met 100.0 1.3E-34 4.6E-39 236.4 18.9 168 1-172 2-170 (265)
2 3i4t_A Diphthine synthase; nia 100.0 1.6E-35 5.6E-40 245.2 13.1 166 1-171 22-187 (292)
3 1vhv_A Diphthine synthase; str 100.0 1.5E-32 5E-37 224.9 16.3 161 1-170 14-175 (268)
4 1wde_A Probable diphthine synt 100.0 7.3E-32 2.5E-36 223.5 12.6 168 1-173 9-178 (294)
5 2ybo_A Methyltransferase; SUMT 100.0 3.1E-31 1.1E-35 219.8 11.5 165 1-173 26-197 (294)
6 4e16_A Precorrin-4 C(11)-methy 100.0 9.3E-31 3.2E-35 212.6 13.2 161 1-171 6-170 (253)
7 1s4d_A Uroporphyrin-III C-meth 100.0 8.4E-31 2.9E-35 215.8 12.7 165 1-173 16-188 (280)
8 1cbf_A Cobalt-precorrin-4 tran 100.0 1E-30 3.6E-35 215.6 12.9 163 1-172 22-187 (285)
9 3ndc_A Precorrin-4 C(11)-methy 100.0 2.2E-30 7.6E-35 211.7 13.6 161 1-171 5-170 (264)
10 1ve2_A Uroporphyrin-III C-meth 100.0 3.1E-30 1.1E-34 207.0 12.2 153 1-173 4-164 (235)
11 2e0n_A Precorrin-2 C20-methylt 100.0 1E-29 3.5E-34 206.8 14.2 161 1-173 6-184 (259)
12 2qbu_A Precorrin-2 methyltrans 100.0 3.4E-29 1.2E-33 200.1 16.3 158 1-173 4-180 (232)
13 1va0_A Uroporphyrin-III C-meth 100.0 4.1E-30 1.4E-34 206.8 9.2 158 1-173 2-163 (239)
14 3nut_A Precorrin-3 methylase; 100.0 1.5E-28 5E-33 199.4 11.0 151 1-169 10-170 (251)
15 1pjq_A CYSG, siroheme synthase 100.0 4.9E-29 1.7E-33 217.6 8.4 163 1-173 217-386 (457)
16 1wyz_A Putative S-adenosylmeth 99.9 4.6E-28 1.6E-32 195.5 10.9 159 1-174 4-178 (242)
17 2npn_A Putative cobalamin synt 99.9 1.5E-27 5E-32 193.3 12.9 135 1-139 4-166 (251)
18 3kwp_A Predicted methyltransfe 99.9 1E-27 3.4E-32 198.9 11.3 158 1-174 17-179 (296)
19 2zvb_A Precorrin-3 C17-methylt 99.9 2.1E-27 7.3E-32 196.9 11.8 154 1-171 3-184 (295)
20 3nd1_A Precorrin-6A synthase/C 99.9 8.7E-27 3E-31 191.4 12.5 162 1-174 23-213 (275)
21 2bb3_A Cobalamin biosynthesis 99.9 1.9E-27 6.5E-32 189.6 7.6 148 1-173 23-172 (221)
22 3hh1_A Tetrapyrrole methylase 99.9 1.3E-23 4.5E-28 151.9 11.4 107 1-116 7-117 (117)
23 3ffy_A Putative tetrapyrrole ( 96.1 0.0055 1.9E-07 43.2 4.0 54 114-175 1-56 (115)
24 3mvn_A UDP-N-acetylmuramate:L- 75.0 12 0.00042 26.9 7.3 36 66-103 125-161 (163)
25 2qip_A Protein of unknown func 61.1 18 0.00061 26.1 5.6 37 73-113 102-139 (165)
26 2ab1_A Hypothetical protein; H 56.4 32 0.0011 23.9 6.0 40 80-119 62-101 (122)
27 3l7o_A Ribose-5-phosphate isom 51.9 43 0.0015 25.9 6.6 69 67-140 6-81 (225)
28 3sho_A Transcriptional regulat 50.9 64 0.0022 23.0 8.9 97 63-171 26-124 (187)
29 1x92_A APC5045, phosphoheptose 48.0 65 0.0022 23.3 7.0 103 65-171 30-150 (199)
30 3kkj_A Amine oxidase, flavin-c 46.4 10 0.00035 27.4 2.2 30 2-34 5-34 (336)
31 3lqk_A Dipicolinate synthase s 45.3 29 0.00098 26.3 4.6 41 78-118 6-46 (201)
32 3kwm_A Ribose-5-phosphate isom 44.1 42 0.0015 25.9 5.5 69 67-140 14-86 (224)
33 2f8m_A Ribose 5-phosphate isom 44.0 79 0.0027 24.7 7.1 60 67-131 14-80 (244)
34 3mcu_A Dipicolinate synthase, 43.2 33 0.0011 26.1 4.7 42 78-119 4-45 (207)
35 1uj6_A Ribose 5-phosphate isom 41.2 67 0.0023 24.7 6.2 61 66-131 9-75 (227)
36 1m0s_A Ribose-5-phosphate isom 40.2 81 0.0028 24.1 6.5 71 67-142 8-82 (219)
37 2yva_A DNAA initiator-associat 39.6 1E+02 0.0035 22.1 8.1 101 67-171 28-146 (196)
38 1lk5_A D-ribose-5-phosphate is 37.8 72 0.0025 24.6 5.9 72 67-143 8-87 (229)
39 3uw1_A Ribose-5-phosphate isom 37.4 77 0.0026 24.7 6.1 67 69-140 18-92 (239)
40 3etn_A Putative phosphosugar i 37.3 1.2E+02 0.004 22.6 7.1 99 63-170 41-144 (220)
41 1jeo_A MJ1247, hypothetical pr 36.5 1.1E+02 0.0036 21.7 6.5 79 80-171 41-119 (180)
42 3kbq_A Protein TA0487; structu 36.5 1.1E+02 0.0038 22.4 6.6 53 5-60 42-94 (172)
43 3gx1_A LIN1832 protein; APC633 36.3 83 0.0028 21.8 5.6 41 74-119 55-97 (130)
44 1m3s_A Hypothetical protein YC 32.6 1.2E+02 0.0042 21.4 6.3 93 63-171 24-116 (186)
45 2pjm_A Ribose-5-phosphate isom 32.0 1.2E+02 0.0043 23.2 6.4 61 67-132 8-73 (226)
46 1g63_A Epidermin modifying enz 31.6 59 0.002 24.1 4.4 38 80-118 3-40 (181)
47 3c8f_A Pyruvate formate-lyase 30.6 77 0.0026 23.2 5.0 36 81-116 71-108 (245)
48 3can_A Pyruvate-formate lyase- 29.6 54 0.0019 23.4 3.8 9 81-89 34-42 (182)
49 1byr_A Protein (endonuclease); 29.0 1.2E+02 0.0043 20.6 5.6 46 69-114 42-88 (155)
50 2p0y_A Hypothetical protein LP 28.4 32 0.0011 28.4 2.5 18 15-32 178-195 (341)
51 3c3d_A 2-phospho-L-lactate tra 28.2 33 0.0011 27.9 2.6 18 15-32 173-190 (311)
52 1p3y_1 MRSD protein; flavoprot 27.9 59 0.002 24.3 3.8 40 78-118 7-46 (194)
53 1vim_A Hypothetical protein AF 26.3 1.5E+02 0.0051 21.5 5.9 92 64-171 35-126 (200)
54 1xtz_A Ribose-5-phosphate isom 26.2 2.1E+02 0.007 22.5 6.9 72 66-142 22-108 (264)
55 3gdw_A Sigma-54 interaction do 25.4 1.6E+02 0.0055 20.6 5.6 34 80-119 64-99 (139)
56 3zyw_A Glutaredoxin-3; metal b 25.4 1.1E+02 0.0037 20.2 4.5 43 72-114 8-52 (111)
57 3hhe_A Ribose-5-phosphate isom 25.3 1.4E+02 0.0049 23.4 5.8 63 67-134 29-95 (255)
58 2o2z_A Hypothetical protein; s 25.0 40 0.0014 27.6 2.5 19 14-32 167-185 (323)
59 2ppv_A Uncharacterized protein 24.7 41 0.0014 27.6 2.5 19 14-32 166-184 (332)
60 2pju_A Propionate catabolism o 24.2 1.9E+02 0.0064 22.0 6.2 28 100-128 147-174 (225)
61 3qjg_A Epidermin biosynthesis 24.0 85 0.0029 23.1 4.0 38 80-118 6-43 (175)
62 2q7x_A UPF0052 protein SP_1565 23.7 34 0.0012 28.0 1.8 19 14-32 173-191 (326)
63 3lk7_A UDP-N-acetylmuramoylala 23.6 2E+02 0.007 23.9 6.8 26 66-91 402-427 (451)
64 3t7v_A Methylornithine synthas 22.6 1.6E+02 0.0055 23.4 5.8 63 66-128 93-164 (350)
65 3iix_A Biotin synthetase, puta 21.9 1.8E+02 0.0063 22.8 6.0 62 67-128 87-154 (348)
66 2fvt_A Conserved hypothetical 21.7 1.2E+02 0.0043 21.2 4.3 39 80-119 68-106 (135)
67 2fi9_A Outer membrane protein; 21.2 98 0.0034 21.4 3.7 21 13-33 52-76 (128)
68 1ycy_A Conserved hypothetical 20.8 52 0.0018 20.3 1.8 26 70-95 7-32 (71)
No 1
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=100.00 E-value=1.3e-34 Score=236.37 Aligned_cols=168 Identities=45% Similarity=0.768 Sum_probs=138.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHH-HHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKIL-SESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 79 (181)
|||+||+|||||++||++|+++|++||+|+++.+.+.+.. ...+ .++.+.++++...++...+++++.+. +.+++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~-~~~~---~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 77 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAG-TTLG---RIQRLIGKEIRVLSREDVELNFENIVLPLAKE 77 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTT-CCHH---HHHHHHTSCCEEECHHHHHHHHHHHTHHHHTT
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEecccccccc-CCHH---HHHhccCCcEEEcCcccHHHHHHHHHHHHhCC
Confidence 6999999999999999999999999999999877532210 0123 44444444444334456677778887 77767
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhc
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~ 159 (181)
++|++|++|||++|+++.++++++.+.|++++++|||||++++|++|+||++++.++++++.+.|++|.+.++.+.+++.
T Consensus 78 ~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aaa~~g~pl~~~~~~~~v~~~s~~~~~~~~~~~l~~~~~ 157 (265)
T 2z6r_A 78 NDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAE 157 (265)
T ss_dssp SCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHGGGGTCCGGGBCCCEEECCCBTTBCCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHHHHhCCCccCCCccEEEEEecCCcCCCchHHHHHHHHh
Confidence 89999999999999999999999999999999999999998669999999999999999999999998766777888888
Q ss_pred CCCceEEEEccee
Q 030179 160 LGLHTLCLLGGVT 172 (181)
Q Consensus 160 ~~~~tlvlld~~~ 172 (181)
.+.+|+|++|++.
T Consensus 158 ~~~~tlvl~d~~~ 170 (265)
T 2z6r_A 158 RGLHTLLFLDIKA 170 (265)
T ss_dssp TTCBEEEEECEEG
T ss_pred CCCceEEEEeccc
Confidence 7779999988663
No 2
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=1.6e-35 Score=245.21 Aligned_cols=166 Identities=59% Similarity=0.997 Sum_probs=136.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHHHHccCC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (181)
|||+||+||||+++||++|+++|++||+|+++.+++... .+.+ .++.+.++++...++...+++++.+++.++++
T Consensus 22 ~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~--~~~~---~L~~~~~~~~i~~~~~~~~~~~~~i~~~a~~~ 96 (292)
T 3i4t_A 22 MLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQ--CDVA---KLEEFYGKKVIIGDRDLVETEADQILEPAKTK 96 (292)
T ss_dssp EEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSS--SCHH---HHHHHHTSCCEEC-------CCCTTHHHHTTS
T ss_pred EEEEEEECCCChHHhhHHHHHHHHhCCEEEEeccccccc--CCHH---HHHhCCCCeEEEcccccHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999987754321 2344 33333444443333334455566677766668
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhcC
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRSL 160 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 160 (181)
+|++|++|||++|+++.++++++.+.|++++++|||||++|+|++|+||++++.+.++.+.+.|++|.++++.+++++..
T Consensus 97 ~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~A~a~~G~pl~~~~~~~sv~~~t~~~~p~~~~~~~~~~l~~ 176 (292)
T 3i4t_A 97 NVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNAIGCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRDN 176 (292)
T ss_dssp EEEEEESBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHHHGGGGSCCGGGBCCCEEECCCBTTBCCCTHHHHHHHHHHT
T ss_pred CEEEEecCCCCccccHHHHHHHHHHCCCcEEEECCHHHHHHHHHhCCCcccCCceeEEEEEeCCCCCCccHHHHHHHhhc
Confidence 99999999999999999999999888999999999999998899999999999999999999999998888899999999
Q ss_pred CCceEEEEcce
Q 030179 161 GLHTLCLLGGV 171 (181)
Q Consensus 161 ~~~tlvlld~~ 171 (181)
+.+|+||+|.+
T Consensus 177 ~~~Tlvl~d~~ 187 (292)
T 3i4t_A 177 NMHTLVLLDIK 187 (292)
T ss_dssp TCBEEEEECEE
T ss_pred CCCeEEEEecc
Confidence 99999999877
No 3
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=100.00 E-value=1.5e-32 Score=224.90 Aligned_cols=161 Identities=38% Similarity=0.670 Sum_probs=129.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCChHHHHHHHHHHHHHccCC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALADREMVEEKADKILSESQES 80 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (181)
+||+||+|||||++||++|+++|++||+|+++.+.+.+.. ..+.++.+++++.....+..++++++.+++.++++
T Consensus 14 ~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~ 88 (268)
T 1vhv_A 14 LLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLS-----SIEEMEEFFGKRVVELERSDLEENSFRLIERAKSK 88 (268)
T ss_dssp EEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCSS-----CHHHHHHHHTSCCEEECHHHHTTTHHHHHHHHTTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCEEEECCchHhhhc-----cHHHHHHHhCCCccccchhHHHHHHHHHHHHhCCC
Confidence 5899999999999999999999999999999876543321 12245554555443322455667778888877668
Q ss_pred CEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhc
Q 030179 81 NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~ 159 (181)
+|++|++|||++|+++.++++++++.|++++++|||||++++ |++|+||++++..+++.+ +.|.+.++.+.+++.
T Consensus 89 ~Va~L~~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~----~~~~~~~~~~~~~l~ 164 (268)
T 1vhv_A 89 SVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSW----HRSQTPVNVIKANRS 164 (268)
T ss_dssp EEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECS----SCCSHHHHHHHHHHH
T ss_pred CEEEEeCCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEe----cCCCchHHHHHHHhc
Confidence 999999999999999999999898899999999999999975 999999999888888855 334444666777788
Q ss_pred CCCceEEEEcc
Q 030179 160 LGLHTLCLLGG 170 (181)
Q Consensus 160 ~~~~tlvlld~ 170 (181)
...+|+|++|.
T Consensus 165 ~~~~tlvl~d~ 175 (268)
T 1vhv_A 165 IDAHTLLFLDL 175 (268)
T ss_dssp TTCBEEEEECC
T ss_pred cCCCeEEEEcC
Confidence 88899999774
No 4
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=99.97 E-value=7.3e-32 Score=223.51 Aligned_cols=168 Identities=33% Similarity=0.409 Sum_probs=133.7
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|||+||+| ||+++||++|+++|++||+|+++.++.. -..++++.+..+. .+++...++...+++++.+.+.+++
T Consensus 9 ~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~g 83 (294)
T 1wde_A 9 TLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMP----GSSWLYKSVVEAAGEARVVEASRRDLEERSREIVSRALD 83 (294)
T ss_dssp EEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSST----TCHHHHHHHHHHHTSSSEEECCHHHHHTSHHHHTCCSSC
T ss_pred EEEEEECC-CChHHhhHHHHHHHHhCCEEEEeccccc----ccccchHHHHHhccCCeEEecChHHHHHHHHHHHHHhCC
Confidence 59999999 9999999999999999999999876410 0012122222222 2333333444556677777776666
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHh
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~ 158 (181)
++|++|++|||++|+++.++++++.+.|++++++|||||++++ |++|+||+++++++++++.+.|+.|.+.++.+.+++
T Consensus 84 ~~Vv~L~~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~~~~~l~~~l 163 (294)
T 1wde_A 84 AVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNL 163 (294)
T ss_dssp CEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCChHHHHHHHH
Confidence 7999999999999999999999999999999999999999976 999999999999999988888877765677888888
Q ss_pred cCCCceEEEEcceee
Q 030179 159 SLGLHTLCLLGGVTL 173 (181)
Q Consensus 159 ~~~~~tlvlld~~~~ 173 (181)
..+.+|+||++....
T Consensus 164 ~~~~~tlvl~~~~~~ 178 (294)
T 1wde_A 164 CAGLHTTALLDVDER 178 (294)
T ss_dssp HHTCEEEEEECBCTT
T ss_pred hcCCCeEEEEecccc
Confidence 888899999987643
No 5
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=99.97 E-value=3.1e-31 Score=219.83 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=122.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHH----Hh-CCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----LY-GKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~----~~-~~~~~~~~~~~~~~~~~~i~~ 75 (181)
|||+||+|||||++||++|+++|++||+|+++.+.+ .+.++.+.. ++ ++..... ...++++.+.+.+
T Consensus 26 ~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~d~~~~-------~~il~~~~~~~~~i~~~k~~~~~-~~~~~~i~~~l~~ 97 (294)
T 2ybo_A 26 SVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVA-------RELIALLPESCQRIYVGKRCGHH-SLPQEEINELLVR 97 (294)
T ss_dssp CEEEEEEESSCGGGSCHHHHHHHTTCSEEEECTTSC-------HHHHHHSCTTSEEEECC---------CHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHcCCEEEEcCCCC-------HHHHHhcccCCeEEecccccccc-cCCHHHHHHHHHH
Confidence 699999999999999999999999999999975532 222211111 00 1111111 1235677777887
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHH
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~ 153 (181)
.+++ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++++.+.++.+.+.|+++.+....
T Consensus 98 ~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~sg~~~~~~~~~~ 177 (294)
T 2ybo_A 98 LARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDL 177 (294)
T ss_dssp HHHTTCCEEEEEEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEEECSCCTTSSCCC
T ss_pred HHHCCCeEEEEcCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEEcccCCcccchhh
Confidence 7765 7999999999999999999999999999999999999999975 9999999998876666667777765321112
Q ss_pred HHHHhcCCCceEEEEcceee
Q 030179 154 IKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 154 i~~~~~~~~~tlvlld~~~~ 173 (181)
.++.+....+|+||++...+
T Consensus 178 ~~~~l~~~~~tlVl~~~~~~ 197 (294)
T 2ybo_A 178 DWAGLARGKQTLVFYMGLGN 197 (294)
T ss_dssp CHHHHTSSSCEEEEESCGGG
T ss_pred HHHHHhcCCCeEEEECcHHH
Confidence 35566777899999976543
No 6
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=99.97 E-value=9.3e-31 Score=212.59 Aligned_cols=161 Identities=17% Similarity=0.121 Sum_probs=117.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCc-ccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHcc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAY-TSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQ 78 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~-~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~ 78 (181)
+||+||+||||+++||++|+++|++||+|+++++ .. .+ .++.+. ++++.......++++++.+.+.++
T Consensus 6 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~-------~~---~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (253)
T 4e16_A 6 KVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVN-------PE---LLEYCKEDCQIHNSAHMDLQEIIDVMREGIE 75 (253)
T ss_dssp CEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSC-------GG---GGGGSCTTCEEEEGGGCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCC-------HH---HHhhcCCCCEEEecCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999643 21 11 111111 122211112235677788887776
Q ss_pred C-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHH
Q 030179 79 E-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (181)
Q Consensus 79 ~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~ 156 (181)
+ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++.+.+.++.+.+.|++........++
T Consensus 76 ~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~~~~~~ 155 (253)
T 4e16_A 76 NNKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQ 155 (253)
T ss_dssp TTCCEEEEESBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCGGGSHH
T ss_pred CCCcEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcchHHHHH
Confidence 5 7999999999999999999999998889999999999999975 8999999987766666666777764211112345
Q ss_pred HhcCCCceEEEEcce
Q 030179 157 NRSLGLHTLCLLGGV 171 (181)
Q Consensus 157 ~~~~~~~tlvlld~~ 171 (181)
.+.....|+|+++-.
T Consensus 156 ~l~~~~~t~vl~~~~ 170 (253)
T 4e16_A 156 SYAKHQTSMVIFLSV 170 (253)
T ss_dssp HHHTTCSEEEEEECS
T ss_pred HHhcCCCeEEEECcH
Confidence 566777899998753
No 7
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=99.97 E-value=8.4e-31 Score=215.77 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=120.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHH----H-hCCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----L-YGKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~~~i~~ 75 (181)
|||+||+|||||++||++|+++|++||+|+|+.+.+ .+.++.+.. + .++....+ ...++++.+.+.+
T Consensus 16 ~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~d~~~~-------~~ll~~~~~~~~~~~~~k~~~~~-~~~~~~i~~~l~~ 87 (280)
T 1s4d_A 16 SVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVN-------EDCLKLARPGAVLEFAGKRGGKP-SPKQRDISLRLVE 87 (280)
T ss_dssp CEEEEECBSSCTTSSBHHHHHHHHHCSEEEECSCSC-------TTGGGGSSTTCCEEECSCCC--C-CCCHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCC-------HHHHHhccCCCEEEecccccccc-ccCHHHHHHHHHH
Confidence 699999999999999999999999999999976532 222221111 0 01111111 1235677788888
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCCh-HH
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSF-YE 152 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~-~~ 152 (181)
.+++ ++|++|++|||++|+++.++++.+++.|++++++|||||++++ |++|+||++++.+.++.+.+.|+++... ..
T Consensus 88 ~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~~~~~~~~~~~~~ 167 (280)
T 1s4d_A 88 LARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDR 167 (280)
T ss_dssp HHHTTCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEEECCC-------C
T ss_pred HHhCCCeEEEEcCCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEECCcCCccccccc
Confidence 7765 7999999999999999999999999999999999999999975 9999999988876666666777765210 00
Q ss_pred HHHHHhcCCCceEEEEcceee
Q 030179 153 KIKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 153 ~i~~~~~~~~~tlvlld~~~~ 173 (181)
..++.+....+|+||++...+
T Consensus 168 ~~~~~l~~~~~tlVl~~~~~~ 188 (280)
T 1s4d_A 168 INWQGIASGSPVIVMYMAMKH 188 (280)
T ss_dssp CCHHHHHTTCSEEEEESCSTT
T ss_pred ccHHHHhCCCCeEEEECchhh
Confidence 124445567799999987654
No 8
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=99.97 E-value=1e-30 Score=215.56 Aligned_cols=163 Identities=23% Similarity=0.220 Sum_probs=122.2
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|||+||+||||+++||++|+++|++||+|+|++.. ...+ .++.+. +++........++++.+.+.+.+++
T Consensus 22 ~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~------~~~~---ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 92 (285)
T 1cbf_A 22 KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSL------VSQD---LIAKSKPGAEVLKTAGMHLEEMVGTMLDRMRE 92 (285)
T ss_dssp EEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTT------SCHH---HHTTSCTTCEEEECTTCCHHHHHHHHHHHHTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCC------CCHH---HHHhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 58999999999999999999999999999996431 1111 222111 2222221122356778888887765
Q ss_pred -CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHH
Q 030179 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRN 157 (181)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 157 (181)
++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||+.++.+.++.+.+.|++........+.+
T Consensus 93 g~~Vv~L~~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~~~~~l~~ 172 (285)
T 1cbf_A 93 GKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTD 172 (285)
T ss_dssp TCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCCGGGCHHH
T ss_pred CCeEEEEeCCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcchHHHHHH
Confidence 7999999999999999999999999999999999999999975 89999999888766776766677621111223456
Q ss_pred hcCCCceEEEEccee
Q 030179 158 RSLGLHTLCLLGGVT 172 (181)
Q Consensus 158 ~~~~~~tlvlld~~~ 172 (181)
+..+.+|+|+++...
T Consensus 173 l~~~~~tlvl~~~~~ 187 (285)
T 1cbf_A 173 LAKHKCTIALFLSST 187 (285)
T ss_dssp HHTTCSEEEEESCTT
T ss_pred HhcCCCeEEEECcHH
Confidence 667779999997543
No 9
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=99.97 E-value=2.2e-30 Score=211.72 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=119.7
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|||+||+||||+++||++|+++|++||+|+++++. ...+ .++.+. ++++.......++++++.+.+.+++
T Consensus 5 ~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~------~~~~---ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 75 (264)
T 3ndc_A 5 TVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSL------VPEA---LLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAA 75 (264)
T ss_dssp CEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTT------SCGG---GGGGSCTTCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCC------CCHH---HHhhcCCCCEEEecCCCCHHHHHHHHHHHHHC
Confidence 69999999999999999999999999999995431 1112 122111 2222211122356777888877655
Q ss_pred -CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCC--CChHHHHH
Q 030179 80 -SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRP--GSFYEKIK 155 (181)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~--~~~~~~i~ 155 (181)
++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++.+...++.+.+.|++. ....+. +
T Consensus 76 G~~Va~L~~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s~~~~~~~~~~~~~-l 154 (264)
T 3ndc_A 76 GQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGET-L 154 (264)
T ss_dssp TCCEEEEESBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEECCTTTCCCCTTCC-H
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEeccCCCCCcchHHH-H
Confidence 8999999999999999999999999999999999999999975 8999999988877777777777763 111122 4
Q ss_pred HHhcCCCceEEEEcce
Q 030179 156 RNRSLGLHTLCLLGGV 171 (181)
Q Consensus 156 ~~~~~~~~tlvlld~~ 171 (181)
+.+.....|+|++.-.
T Consensus 155 ~~l~~~~~tlvl~~~~ 170 (264)
T 3ndc_A 155 ENFARTGAVLAIHLSV 170 (264)
T ss_dssp HHHHTTTCEEEEESCG
T ss_pred HHHhcCCCcEEEecCH
Confidence 4455566888888654
No 10
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=99.97 E-value=3.1e-30 Score=207.04 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=114.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCccccCC------hHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIALAD------REMVEEKADKIL 74 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~i~ 74 (181)
+||+||+|||||++||++|+++|++||+|+++.+.+ .+.++.+ +++..... ...++++.+.+.
T Consensus 4 ~l~vVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~-------~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~ 72 (235)
T 1ve2_A 4 KVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVH-------PGVLALA----KGELVPVGKEGYGGKTPQEAITARLI 72 (235)
T ss_dssp EEEEEECBSSSGGGSBHHHHHHHHHCSEEEECTTSC-------HHHHTTC----CSEEEEC-------CCCHHHHHHHHH
T ss_pred EEEEEeeCCCCHHHHHHHHHHHHHhCCEEEEeCCCC-------HHHHHhh----CcEEEEecccCcccccCHHHHHHHHH
Confidence 489999999999999999999999999999975532 2211111 11111100 123567777787
Q ss_pred HHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHH
Q 030179 75 SESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYE 152 (181)
Q Consensus 75 ~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~ 152 (181)
+.+++ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++++.+.++.+.+.|+ |.+
T Consensus 73 ~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~s~~~-~~~--- 148 (235)
T 1ve2_A 73 ALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVATGHD-PAL--- 148 (235)
T ss_dssp HHHHTTCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEEESSC-TTS---
T ss_pred HHHHcCCeEEEEcCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEeCCCC-chh---
Confidence 77766 7999999999999999999999998889999999999999975 99999999987655555666776 532
Q ss_pred HHHHHhcCCCceEEEEcceee
Q 030179 153 KIKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 153 ~i~~~~~~~~~tlvlld~~~~ 173 (181)
++. +.+|+|+++-..+
T Consensus 149 ----~l~-~~~t~vl~~~~~~ 164 (235)
T 1ve2_A 149 ----PLP-RADTLVLLMPLHT 164 (235)
T ss_dssp ----CCC-BCSEEEEEC----
T ss_pred ----hhc-cCCeEEEEcChhh
Confidence 444 6689999975544
No 11
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=99.96 E-value=1e-29 Score=206.78 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=116.7
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh------CCccc-----cCCh-----H
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY------GKPIA-----LADR-----E 64 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~------~~~~~-----~~~~-----~ 64 (181)
+||+||+|||||++||++|+++|++||+|+++.....- .++++.+..+. ++++. +... .
T Consensus 6 ~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T 2e0n_A 6 SIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSAS-----GAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEA 80 (259)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTT-----CCEECHHHHHHTTTTCCGGGEEEEEEECC--------
T ss_pred EEEEEEeCCCChHHHHHHHHHHHHhCCEEEEecccccc-----ccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHH
Confidence 48999999999999999999999999999998543100 01112332211 11111 1111 1
Q ss_pred HHHHHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEeccc
Q 030179 65 MVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFT 142 (181)
Q Consensus 65 ~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~ 142 (181)
.++++.+.+.+.+++ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++++..++++..+
T Consensus 81 ~~~~~~~~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~~~~~ 160 (259)
T 2e0n_A 81 SYAANYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLVLAQI 160 (259)
T ss_dssp -CGGGHHHHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEEECSC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEEEcCC
Confidence 245677788887765 7999999999999999999999999999999999999999975 99999999887777765432
Q ss_pred CCCCCCChHHHHHHHhcCCCceEEEEcceee
Q 030179 143 ETWRPGSFYEKIKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~tlvlld~~~~ 173 (181)
. + .+.+.+.+. ..+|+|+++...+
T Consensus 161 --~-~---~~~l~~~~~-~~~t~vl~~~~~~ 184 (259)
T 2e0n_A 161 --D-E---IGELERALV-THSTVVVMKLSTV 184 (259)
T ss_dssp --S-S---THHHHHHHT-TCSEEEECCTTSS
T ss_pred --C-C---HHHHHHHhh-cCCEEEEEccccc
Confidence 1 1 244444444 4589999976654
No 12
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.96 E-value=3.4e-29 Score=200.12 Aligned_cols=158 Identities=21% Similarity=0.295 Sum_probs=117.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccc--hhhhhHHHh-----CCccc---c--C-C----h
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTD--GLSTLEKLY-----GKPIA---L--A-D----R 63 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~--~l~~~~~~~-----~~~~~---~--~-~----~ 63 (181)
|||+||+|||||++||++|+++|++||+|+++.+... .+ +++.++.+. +++.. + . + .
T Consensus 4 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~------~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (232)
T 2qbu_A 4 KLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSE------RESIALSIVEDILTERRDGCRILDPVFPMTDDRDELE 77 (232)
T ss_dssp CEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTC------SSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCC------ccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHH
Confidence 6999999999999999999999999999999865310 01 122332221 12111 0 0 1 1
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecc
Q 030179 64 EMVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFF 141 (181)
Q Consensus 64 ~~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~ 141 (181)
..++++++.+.+.+++ ++|+++++|||++|+++.++++.+.+.|++++++|||||++++ |++|+|+++++..+.+++
T Consensus 78 ~~~~~~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~- 156 (232)
T 2qbu_A 78 SHWDSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVVP- 156 (232)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEEES-
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEEEe-
Confidence 3467888888887766 7999999999999999999999999999999999999999975 999999998777777643
Q ss_pred cCCCCCCChHHHHHHHhcCCCceEEEEcceee
Q 030179 142 TETWRPGSFYEKIKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~tlvlld~~~~ 173 (181)
+++. .+...+.. .+|+|+++...+
T Consensus 157 ---~~~~----~l~~~~~~-~~t~vl~~~~~~ 180 (232)
T 2qbu_A 157 ---RVDD----RFERVLRD-VDACVIMKTSRH 180 (232)
T ss_dssp ---SCCH----HHHHHGGG-CSEEEESSHHHH
T ss_pred ---CCHH----HHHHHhhc-CCeEEEEcccCc
Confidence 2221 33344433 479999976543
No 13
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=99.96 E-value=4.1e-30 Score=206.80 Aligned_cols=158 Identities=23% Similarity=0.247 Sum_probs=117.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhH-H-H-hCCccccCChHHHHHHHHHHHHHc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLE-K-L-YGKPIALADREMVEEKADKILSES 77 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~-~-~-~~~~~~~~~~~~~~~~~~~i~~~~ 77 (181)
|||+||+|||||++||++|+++|++||+|+++.+.+ ++.++.+. + + .+++.. . ...++++.+.+.+.+
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advI~~~~~~~-------~~~l~~~~~~~i~~~~~~~-~-~~~~~~~~~~i~~~~ 72 (239)
T 1va0_A 2 RVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVD-------ERVLALAPGEKVYVGKEEG-E-SEKQEEIHRLLLRHA 72 (239)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSC-------HHHHTTCCSEEEECCCCC------CHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCC-------HHHHhhccccEEecccccc-c-ccCHHHHHHHHHHHH
Confidence 689999999999999999999999999999975532 22221111 0 0 111110 0 234567778888777
Q ss_pred cC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChHHHHHH
Q 030179 78 QE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKR 156 (181)
Q Consensus 78 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~ 156 (181)
++ ++|+++++|||++|+++.++++.+++.|++++++|||||++++ |+||++++.+.++.+.+.|+++.. ...++
T Consensus 73 ~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa---g~pl~~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (239)
T 1va0_A 73 RAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS---GLPLTHRGLAHGFAAVSGVLEGGG--YPDLR 147 (239)
T ss_dssp HTSSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT---CCCSSBTTTBSEEEEEESSCGGGC--CCCCT
T ss_pred HCCCcEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc---CCCcccCCccceEEEEeccCCccc--hhhHH
Confidence 65 7999999999999999999999999999999999999999987 999999876555656667765421 12355
Q ss_pred HhcCCCceEEEEcceee
Q 030179 157 NRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 157 ~~~~~~~tlvlld~~~~ 173 (181)
++..+ +|+|+++...+
T Consensus 148 ~l~~~-~t~vl~~~~~~ 163 (239)
T 1va0_A 148 PFARV-PTLVVLMGVGR 163 (239)
T ss_dssp TTTTC-SSEEEESCSTT
T ss_pred HhcCC-CcEEEEccHHH
Confidence 66677 99999976543
No 14
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=99.95 E-value=1.5e-28 Score=199.36 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=104.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCcccc-CChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL-ADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 79 (181)
++|+||+|||||++||++|+++|++||+|++.++. ++.+....+++... ...+..+ .++.+++.+++
T Consensus 10 ~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~-----------~~~~~~~~~~~~~~~~~~~ei~-~~~~li~~~~~ 77 (251)
T 3nut_A 10 WVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPY-----------VARIAPREGLTLHPTDNRVELD-RATHALEMAAE 77 (251)
T ss_dssp EEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGG-----------GTTCCCCTTCEEEECCSSCCHH-HHHHHHHHHHT
T ss_pred cEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCcc-----------cccccccCCCEEeecCCHHHHH-HHHHHHHHHHC
Confidence 58999999999999999999999999999975331 01111011222211 1111111 12456665655
Q ss_pred -CCEEEEecCCccccccHHHHHHHHHh----CCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHH
Q 030179 80 -SNVAFLVVGDPFGATTHTDLVVRAKK----LGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (181)
Q Consensus 80 -~~V~~l~~GDP~~~~~~~~l~~~~~~----~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~ 153 (181)
++|++|++|||++|+++.++++.+.+ .|++++++|||||++++ |++|+||++... +.+.|++.. .++.
T Consensus 78 G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~-----~~s~~~~~~-~~~~ 151 (251)
T 3nut_A 78 GRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFC-----AINLSDNLK-PFEI 151 (251)
T ss_dssp TCEEEEEESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEE-----EEESCCTTS-CHHH
T ss_pred CCeEEEEeCCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeE-----EEEecCCCC-ChHH
Confidence 79999999999999999999999987 89999999999999975 899999975432 223344321 2444
Q ss_pred HHHH---hcCCCceEEEEc
Q 030179 154 IKRN---RSLGLHTLCLLG 169 (181)
Q Consensus 154 i~~~---~~~~~~tlvlld 169 (181)
+.+. +.....|+|++.
T Consensus 152 ~~~~l~~l~~~~~tlvl~~ 170 (251)
T 3nut_A 152 LEKRLRHAARGDFAMAFYN 170 (251)
T ss_dssp HHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHhCCCCEEEEEC
Confidence 4433 345567888885
No 15
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=99.95 E-value=4.9e-29 Score=217.64 Aligned_cols=163 Identities=23% Similarity=0.288 Sum_probs=120.3
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHH----H-hCCccccCChHHHHHHHHHHHH
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEK----L-YGKPIALADREMVEEKADKILS 75 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~~~i~~ 75 (181)
+||+||+|||||++||++|+++|++||+|+|+.+.+ .+.++.+.. + .++....+ ...++++.+.+.+
T Consensus 217 ~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~d~~~~-------~~il~~~~~~~~~~~~~k~~~~~-~~~~~~i~~~l~~ 288 (457)
T 1pjq_A 217 EVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVS-------DDIMNLVRRDADRVFVGKRAGYH-CVPQEEINQILLR 288 (457)
T ss_dssp EEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSC-------HHHHTTSCTTSEEEECSCC---C-CCTTHHHHHHHHH
T ss_pred EEEEEeCCCCChHHccHHHHHHHHhCCEEEEeCCCC-------HHHHhhcccCCEEEecccccccc-CCCHHHHHHHHHH
Confidence 589999999999999999999999999999976542 121111110 1 11211111 1235677777887
Q ss_pred HccC-CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHH
Q 030179 76 ESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEK 153 (181)
Q Consensus 76 ~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~ 153 (181)
.+++ ++|++|++|||++|+++.++++.+.+.|++++++|||||++++ |++|+||++++.+.++.+.+.|+++.. ..
T Consensus 289 ~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~vsg~~~~~~--~~ 366 (457)
T 1pjq_A 289 EAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGG--EL 366 (457)
T ss_dssp HHHTTCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEECC--------CC
T ss_pred HHHCCCcEEEEeCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEEeCCCCCcc--hh
Confidence 7766 7999999999999999999999998899999999999999975 899999999988777777788876421 11
Q ss_pred HHHHhcCCCceEEEEcceee
Q 030179 154 IKRNRSLGLHTLCLLGGVTL 173 (181)
Q Consensus 154 i~~~~~~~~~tlvlld~~~~ 173 (181)
.++++....+|+||++...+
T Consensus 367 ~~~~l~~~~~t~Vl~~~~~~ 386 (457)
T 1pjq_A 367 DWENLAAEKQTLVFYMGLNQ 386 (457)
T ss_dssp CHHHHHSSSEEEEESSCSSS
T ss_pred hHHHHhcCCCeEEEEcchhh
Confidence 25566677899999976543
No 16
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=99.95 E-value=4.6e-28 Score=195.52 Aligned_cols=159 Identities=15% Similarity=0.109 Sum_probs=103.2
Q ss_pred CEEEEecCCCCcc---chhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHH-hCCc-----cccCChHHHHHHHH
Q 030179 1 MLYIIGLGLGDER---DITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKP-----IALADREMVEEKAD 71 (181)
Q Consensus 1 ~l~iVG~GpG~~~---~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~-~~~~-----~~~~~~~~~~~~~~ 71 (181)
|||+||+|||||+ +||+||+++|++||+|+++++.. +.+ .++.+ ..++ .....+..+++.++
T Consensus 4 ~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~------~~~---ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (242)
T 1wyz_A 4 ALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRS------ARR---FLKKVDREIDIDSLTFYPLNKHTSPEDIS 74 (242)
T ss_dssp SEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHH------HHH---HHHHHCSSSCTTCCCCEECCSSCCHHHHH
T ss_pred eEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcc------hHH---HHHhcCCCCceeeeeeecccccCHHHHHH
Confidence 6999999999998 79999999999999999975421 122 22222 1111 11111223355567
Q ss_pred HHHHHccC-CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCC
Q 030179 72 KILSESQE-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPG 148 (181)
Q Consensus 72 ~i~~~~~~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~ 148 (181)
.+++.+++ ++|++++ .|||++|+++.++++++++.|++++++|||||++++ |++|+|++++ .+. +.+.++.
T Consensus 75 ~i~~~~~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f----~~~--g~~p~~~ 148 (242)
T 1wyz_A 75 GYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSF----AFH--GYLPIEP 148 (242)
T ss_dssp HHHHHHHTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSE----EEE--EECCSST
T ss_pred HHHHHHHcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeE----EEE--EEcCCCc
Confidence 77777766 7999997 899999999999999999999999999999999875 8999997754 221 2121111
Q ss_pred ChHHHHHHHhcCC----CceEEEEcceeee
Q 030179 149 SFYEKIKRNRSLG----LHTLCLLGGVTLC 174 (181)
Q Consensus 149 ~~~~~i~~~~~~~----~~tlvlld~~~~~ 174 (181)
......++.+... .+|+||++...++
T Consensus 149 ~~~~~~l~~l~~~~~~~~~t~vl~~~~~~~ 178 (242)
T 1wyz_A 149 GERAKKLKTLEQRVYAESQTQLFIETPYRN 178 (242)
T ss_dssp THHHHHHHHHHHHHHHHTCEEEEEECGGGH
T ss_pred cchHHHHHHHhcccccCCCeEEEEEcHHHH
Confidence 1111233344443 6999999865443
No 17
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=99.95 E-value=1.5e-27 Score=193.33 Aligned_cols=135 Identities=23% Similarity=0.394 Sum_probs=96.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCccc---ccccccccchhhhhHHHh-CCccc-cC----Ch--------
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTS---LLSFGLSTDGLSTLEKLY-GKPIA-LA----DR-------- 63 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~---~l~~g~~~~~l~~~~~~~-~~~~~-~~----~~-------- 63 (181)
|||+||+|||||++||++|+++|++||+|+++.... .+.. ...+ .++.+. ++++. +. ++
T Consensus 4 ~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~-~~~~---il~~~~~~~~~~~~~~p~~~~~~~~~~~~ 79 (251)
T 2npn_A 4 TIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLA-LRQK---IVDTHAPGTPIYAVTDPERDRNPDNYEEE 79 (251)
T ss_dssp EEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHH-HHHH---HHHHHSTTCCEEEECC----------CHH
T ss_pred EEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhh-hHHH---HHHHHhCCCEEEEecCCCcccchhhhhhh
Confidence 599999999999999999999999999999974310 0100 0011 233222 22221 10 00
Q ss_pred -----HHHHHHH-HHHHHHccC-CCEEEEecCCccccccHHHHHHHHHhCC---CcEEEECCccHHHHH-HHcCCCcccC
Q 030179 64 -----EMVEEKA-DKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAKKLG---IQVKAVHNASVMNAV-GICGLQLYRF 132 (181)
Q Consensus 64 -----~~~~~~~-~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~g---~~v~iiPGiSs~~a~-a~~g~~l~~~ 132 (181)
...++.. +.+.+.+++ ++|++|++|||++|+++.++++.+.+.| ++++++|||||++++ |++|+||+++
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~g~~Vv~l~~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~ 159 (251)
T 2npn_A 80 VRRWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRI 159 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCEEEEEESBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCT
T ss_pred hhhhhhhHHHHHHHHHHHHHHCCCeEEEEeCCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCC
Confidence 1222333 356566655 7999999999999999999999998766 899999999999975 8999999997
Q ss_pred CceeEEe
Q 030179 133 GETVSIP 139 (181)
Q Consensus 133 ~~~~~v~ 139 (181)
.+.+.++
T Consensus 160 ~~~~~~~ 166 (251)
T 2npn_A 160 GEAIHIT 166 (251)
T ss_dssp TCCCEEE
T ss_pred CCeEEEE
Confidence 7666665
No 18
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=99.95 E-value=1e-27 Score=198.89 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=115.8
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHH-hCCccc-cCChHHHHHHHHHHHHHcc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-YGKPIA-LADREMVEEKADKILSESQ 78 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~i~~~~~ 78 (181)
+||+||+||||+++||++|+++|++||+|++++.. ...+ .++.+ .+++.. ++ ..+.++..+.+++.++
T Consensus 17 ~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr------~~~~---lL~~~~~~~~~i~~~-~~~~~~~~~~li~~l~ 86 (296)
T 3kwp_A 17 HLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTR------NTQK---LLNHFEITTKQISFH-EHNTQERIPQLIAKLK 86 (296)
T ss_dssp EEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHH------HHHH---HHHHTTCCCEEEECS-TTTHHHHHHHHHHHHH
T ss_pred eEEEeccCCCCccchhhHHHHHHhHhhhhhhhccc------cHHH---Hhhheeeeeeeeehh-hcchhhHhHHHHHHHh
Confidence 48999999999999999999999999999997531 0112 22222 122222 22 2234566677877776
Q ss_pred C-CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHH
Q 030179 79 E-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIK 155 (181)
Q Consensus 79 ~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~ 155 (181)
+ ++|++++ +|||++|+++.++++.+.+.|++++++|||||++++ +++|+||+.| .+ .+.+.+........+
T Consensus 87 ~G~~Va~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f----~f--~g~~p~~~~~r~~~l 160 (296)
T 3kwp_A 87 QGMQIAQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPF----YF--YGFLDRKPKDRKAEI 160 (296)
T ss_dssp TTCEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSE----EE--EEECCSSHHHHHHHH
T ss_pred cCceEEEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCce----eE--EeeccCCcHHHHHHH
Confidence 5 7999998 999999999999999999999999999999999875 9999999754 22 222322111123457
Q ss_pred HHhcCCCceEEEEcceeee
Q 030179 156 RNRSLGLHTLCLLGGVTLC 174 (181)
Q Consensus 156 ~~~~~~~~tlvlld~~~~~ 174 (181)
+.+....+|+||++-..|+
T Consensus 161 ~~l~~~~~tlV~y~~~~rl 179 (296)
T 3kwp_A 161 AGLAQRPETLIFYEAPHRL 179 (296)
T ss_dssp HTTTTCCSEEEEEECGGGH
T ss_pred HHhhcCCceeEeeeCcHHH
Confidence 7777888999999876654
No 19
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=99.95 E-value=2.1e-27 Score=196.88 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=107.9
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHH--h-CCccccCChHHHHHHHHHHHHHc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL--Y-GKPIALADREMVEEKADKILSES 77 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~ 77 (181)
|||+||+|||||++||++|+++|++||+|++.+. .++.+..+ . ++++.......-.+..+.+++.+
T Consensus 3 ~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~-----------~l~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a 71 (295)
T 2zvb_A 3 ELFLVGMGPGDLPGLTQRAREALEGAEVVIGYST-----------YVKLLEEMGLLAGKEVVRKGMTEELDRAEEALERA 71 (295)
T ss_dssp EEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHH-----------HHHHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHH
T ss_pred EEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCc-----------HHHHHHHhhccCCCEEEecCCchHHHHHHHHHHHH
Confidence 5999999999999999999999999999996421 12233333 1 33322111111123445555655
Q ss_pred cC-CCEEEEecCCccccccHHHHHHHHHhC--------------------CCcEEEECCccHHHHH-HHcCCCcccCCce
Q 030179 78 QE-SNVAFLVVGDPFGATTHTDLVVRAKKL--------------------GIQVKAVHNASVMNAV-GICGLQLYRFGET 135 (181)
Q Consensus 78 ~~-~~V~~l~~GDP~~~~~~~~l~~~~~~~--------------------g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~ 135 (181)
++ ++|++|++|||++|+++.++.+.+++. |++++++|||||++++ |++|+||++.
T Consensus 72 ~~G~~Va~L~~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~--- 148 (295)
T 2zvb_A 72 LSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHD--- 148 (295)
T ss_dssp HTTCEEEEEESBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSC---
T ss_pred HCCCcEEEEeCCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCC---
Confidence 55 799999999999999999999988765 4899999999999975 8999999653
Q ss_pred eEEecccCCCCCCChHHHHHH---HhcCCCceEEEEcce
Q 030179 136 VSIPFFTETWRPGSFYEKIKR---NRSLGLHTLCLLGGV 171 (181)
Q Consensus 136 ~~v~~~~~~~~~~~~~~~i~~---~~~~~~~tlvlld~~ 171 (181)
+.+.+.|++. .+++.+.+ +...+.+|+||++.+
T Consensus 149 --~~~is~~~~~-~~~~~l~~~l~~~~~~~~t~vl~~~~ 184 (295)
T 2zvb_A 149 --TCLISLSDLL-TPWPLIERRLHAAGQGDFVVVLYNPQ 184 (295)
T ss_dssp --EEEEECCCTT-SCHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred --CeEEeCCCCC-CCHHHHHHHHHHhhcCCcEEEEEcCC
Confidence 2334455531 12554433 334467899999853
No 20
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=99.94 E-value=8.7e-27 Score=191.44 Aligned_cols=162 Identities=20% Similarity=0.253 Sum_probs=109.6
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCccc---ccccccccchhhhhHHHh-C--Cccc-c----CC-------
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTS---LLSFGLSTDGLSTLEKLY-G--KPIA-L----AD------- 62 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~---~l~~g~~~~~l~~~~~~~-~--~~~~-~----~~------- 62 (181)
+||+||+|||||++||+||+++|++||+|++++... .+.. ++.+ .++.+. . .++. + .+
T Consensus 23 ~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~-~a~~---il~~~~~~~~~~~i~~~~pm~~~~~~~Y~ 98 (275)
T 3nd1_A 23 ELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAG-LRRQ---ICAAHLTNPATKVIDFALPVRDASNPSYR 98 (275)
T ss_dssp EEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHH-HHHH---HHHHHCCCTTCEEEEECCCCC--------
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhh-hHHH---HHHHhhcccCcEEEEecCCccccccchhh
Confidence 389999999999999999999999999999986531 1100 0122 344332 1 1211 1 00
Q ss_pred ------hHHHH-HHHHHHHHHccC--CCEEEEecCCccccccHHHHHHHHHh-CCCcEEEECCccHHHHH-HHcCCCccc
Q 030179 63 ------REMVE-EKADKILSESQE--SNVAFLVVGDPFGATTHTDLVVRAKK-LGIQVKAVHNASVMNAV-GICGLQLYR 131 (181)
Q Consensus 63 ------~~~~~-~~~~~i~~~~~~--~~V~~l~~GDP~~~~~~~~l~~~~~~-~g~~v~iiPGiSs~~a~-a~~g~~l~~ 131 (181)
.+..+ .+.+.+.+.+++ ++|++|++|||++|+++.++++.+.+ .|++++++|||||++++ |++|+||++
T Consensus 99 ~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~pl~~ 178 (275)
T 3nd1_A 99 KGVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLND 178 (275)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEESBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCCSSC
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCCCcc
Confidence 01112 234456677765 58999999999999999999999887 79999999999999975 899999999
Q ss_pred CCceeEEecccCCCCCCChHHHHHHHhcCCCceEEEEcceeee
Q 030179 132 FGETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLGGVTLC 174 (181)
Q Consensus 132 ~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~tlvlld~~~~~ 174 (181)
+++.+.++... . .+. .+.+.....++||++-..++
T Consensus 179 ~~~~~~~l~g~----~---~~~-~~~~~~~~~~vvl~~~~~~l 213 (275)
T 3nd1_A 179 IGAPVVITTGR----Q---LRD-HGWPAGTETVVAMLDGECSF 213 (275)
T ss_dssp TTCCEEEEEHH----H---HHH-HCSCTTCSEEEEESCSSCGG
T ss_pred CCcEEEEEcCC----C---cch-HHHHhCCCCEEEEECCcccH
Confidence 86666654422 1 111 11223344566777665443
No 21
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.94 E-value=1.9e-27 Score=189.60 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=99.4
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHh-CCccccCChHHHHHHHHHHHHHccC
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLY-GKPIALADREMVEEKADKILSESQE 79 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (181)
|+|+||+||| |++||++|+++|++||+|+++. ++++.+..+. .+...+. ..+++.++.+.+..++
T Consensus 23 ~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~~-----------~~l~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~g 88 (221)
T 2bb3_A 23 MIWIVGSGTC-RGQTTERAKEIIERAEVIYGSR-----------RALELAGVVDDSRARILR--SFKGDEIRRIMEEGRE 88 (221)
T ss_dssp EEEEEECBSS-TTCCCHHHHHHHHHCSEEEECH-----------HHHHHTTCTTCTTEEECS--CCSHHHHHHHHHHHHH
T ss_pred EEEEEEeCCC-hhHhHHHHHHHHHhCCEEEECH-----------HHHHHhhhhcCCceEecc--chHHHHHHHHHHhcCC
Confidence 6899999999 9999999999999999999842 2222333322 1222121 2234555566543344
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHH-HHcCCCcccCCceeEEecccCCCCCCChHHHHHHHh
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAV-GICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNR 158 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~-a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~ 158 (181)
++|++|++|||++|+.+..+ .++ ..+++++++|||||++++ |++|+||++ +.+.+.|+++.. +. ++.+
T Consensus 89 ~~Vv~L~~GDP~i~~~~~~l-~~~-~~~i~veviPGiSS~~aa~a~~g~pl~~------~~~vs~~~r~~~--~~-l~~l 157 (221)
T 2bb3_A 89 REVAVISTGDPMVAGLGRVL-REI-AEDVEIKIEPAISSVQVALARLKVDLSE------VAVVDCHAKDFD--AE-LTEL 157 (221)
T ss_dssp SCEEEEESBCTTTTTSHHHH-HTS-CCSSEEEEECCCCHHHHHHHHHTCCGGG------EEEEEC----CC--HH-HHTH
T ss_pred CcEEEEeCCCCccccCHHHH-HHh-cCCCCEEEECCHHHHHHHHHHhCCCcee------EEEEeecCCCch--HH-HHHH
Confidence 89999999999999977654 334 358999999999999975 899999996 334456666432 12 2223
Q ss_pred cCCCceEEEEcceee
Q 030179 159 SLGLHTLCLLGGVTL 173 (181)
Q Consensus 159 ~~~~~tlvlld~~~~ 173 (181)
.....++++++.+.+
T Consensus 158 ~~~~~~vvl~~~~~~ 172 (221)
T 2bb3_A 158 LKYRHLLILADSHFP 172 (221)
T ss_dssp HHHCEEEEEECTTCC
T ss_pred hcCCeEEEEECCCCC
Confidence 333488888886654
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.90 E-value=1.3e-23 Score=151.91 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=81.5
Q ss_pred CEEEEecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHH-h-CCccccCChHHHHHHHHHHHHHcc
Q 030179 1 MLYIIGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKL-Y-GKPIALADREMVEEKADKILSESQ 78 (181)
Q Consensus 1 ~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~ 78 (181)
|||+||+||||+++||++|+++|++||+|++++... +.+ .++.+ . ++++.......+++.++.+++.++
T Consensus 7 ~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~------~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (117)
T 3hh1_A 7 TLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRR------TSI---LLKHFGIEGKRLVSYHSFNEERAVRQVIELLE 77 (117)
T ss_dssp CEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHH------HHH---HHHHTTCCSCCEEECCSTTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCch------HHH---HHHHhCCCCCEEeccCCccHHHHHHHHHHHHH
Confidence 699999999999999999999999999999964311 112 22222 1 233322222345567777888776
Q ss_pred C-CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEECCc
Q 030179 79 E-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNA 116 (181)
Q Consensus 79 ~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~iiPGi 116 (181)
+ ++|++++ +|||++|+++.++++++++.|++++++||.
T Consensus 78 ~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 78 EGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp TTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred CCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 6 7999999 899999999999999999999999999995
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=96.10 E-value=0.0055 Score=43.17 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=36.5
Q ss_pred CCccHHHH-HHHcCCCcccCCceeEEecccCCCCCCC-hHHHHHHHhcCCCceEEEEcceeeee
Q 030179 114 HNASVMNA-VGICGLQLYRFGETVSIPFFTETWRPGS-FYEKIKRNRSLGLHTLCLLGGVTLCV 175 (181)
Q Consensus 114 PGiSs~~a-~a~~g~~l~~~~~~~~v~~~~~~~~~~~-~~~~i~~~~~~~~~tlvlld~~~~~~ 175 (181)
||+||+.+ ++.+|+|.+.| .|. ++.|.+ -....++.+.....|+||++-.+|+.
T Consensus 1 PG~sA~~~Al~~sGlp~~~F------~F~--Gflp~~~~r~~~l~~la~~~~TlVfyesp~Rl~ 56 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKF------CFE--GFLPQKKGRMTKLKSLVDEHRTMVFYESPHRLL 56 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSE------EEE--ESCCSSTTHHHHHHHTTTCCSEEEEEECTTTHH
T ss_pred CchhHHHHHHHHcCCCCCcE------EEE--eeCCCCccHHHHHHHHhCCCCeEEEEechHHHH
Confidence 89999765 59999997753 232 222221 13445777888889999999887764
No 24
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=74.97 E-value=12 Score=26.92 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHccCCCEEEEe-cCCccccccHHHHHHHH
Q 030179 66 VEEKADKILSESQESNVAFLV-VGDPFGATTHTDLVVRA 103 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~-~GDP~~~~~~~~l~~~~ 103 (181)
.++..+.+.+.++.++++++. +|| ++..+..+++.+
T Consensus 125 ~~eai~~~~~~~~~gDvVLv~Gsg~--~~~~~~~l~~~l 161 (163)
T 3mvn_A 125 VDELVMRIVQQAKPNDHILIMSNGA--FGGIHQKLLTAL 161 (163)
T ss_dssp HHHHHHHHHHHCCTTCEEEEECSSC--GGGHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHHHH
Confidence 456667777777777777665 787 666666665543
No 25
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=61.11 E-value=18 Score=26.14 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHccCCCEEEEecCCccccccHHHHHHHHHhC-CCcEEEE
Q 030179 73 ILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL-GIQVKAV 113 (181)
Q Consensus 73 i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~-g~~v~ii 113 (181)
+.+.+..-+.++|++|| +-+..+++++++. |.+|.++
T Consensus 102 ~~~~a~~~d~~vLvSgD----~DF~plv~~lr~~~G~~V~v~ 139 (165)
T 2qip_A 102 AIEIAPDVDRVILVSGD----GDFSLLVERIQQRYNKKVTVY 139 (165)
T ss_dssp HHHHGGGCSEEEEECCC----GGGHHHHHHHHHHHCCEEEEE
T ss_pred HHHhhccCCEEEEEECC----hhHHHHHHHHHHHcCcEEEEE
Confidence 44444335899999999 5667788899986 9898887
No 26
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=56.41 E-value=32 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=33.0
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~ 119 (181)
=++.++-.|....+.....+.+.+++.|+.+|+-+=-.+.
T Consensus 62 ~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A~ 101 (122)
T 2ab1_A 62 VQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAV 101 (122)
T ss_dssp CSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHHHHH
T ss_pred CCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHHHHH
Confidence 3899999999988767778889999999999997654443
No 27
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=51.92 E-value=43 Score=25.88 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=40.7
Q ss_pred HHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhC----CCcEEEECC-ccHHHHHHHcCCCcccCCc--eeEEe
Q 030179 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL----GIQVKAVHN-ASVMNAVGICGLQLYRFGE--TVSIP 139 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~----g~~v~iiPG-iSs~~a~a~~g~~l~~~~~--~~~v~ 139 (181)
+.+++...++.+++.++.|-+| |+..++++++.+. +.++.++|- ..+.+.+...|+++...++ .+.+.
T Consensus 6 ~~iA~~A~~~V~dg~vIgLGsG-----ST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a 80 (225)
T 3l7o_A 6 KIAGVRAAQYVEDGMIVGLGTG-----STAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVT 80 (225)
T ss_dssp HHHHHHHHTTCCTTCEEEECCS-----TTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEECCc-----HHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhccCceEEecCcccccCEE
Confidence 3455666666677889999999 4566666666432 445665542 2222334567998776433 34444
Q ss_pred c
Q 030179 140 F 140 (181)
Q Consensus 140 ~ 140 (181)
+
T Consensus 81 ~ 81 (225)
T 3l7o_A 81 V 81 (225)
T ss_dssp E
T ss_pred E
Confidence 4
No 28
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=50.93 E-value=64 Score=22.98 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEEC-CccHHHH-HHHcCCCcccCCceeEEec
Q 030179 63 REMVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH-NASVMNA-VGICGLQLYRFGETVSIPF 140 (181)
Q Consensus 63 ~~~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiP-GiSs~~a-~a~~g~~l~~~~~~~~v~~ 140 (181)
.+.+++.++.|.+ .++|.++-.|... ....++...+...|.++..++ +.+.+.. +..+ .+ +. .++.
T Consensus 26 ~~~l~~~~~~i~~---a~~I~i~G~G~S~--~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~----~~-~d--~~i~ 93 (187)
T 3sho_A 26 PEAIEAAVEAICR---ADHVIVVGMGFSA--AVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANL----RP-TD--LMIG 93 (187)
T ss_dssp HHHHHHHHHHHHH---CSEEEEECCGGGH--HHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTC----CT-TE--EEEE
T ss_pred HHHHHHHHHHHHh---CCEEEEEecCchH--HHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcC----CC-CC--EEEE
Confidence 3445555555433 3678877788643 344455566677889999998 4444433 2222 11 11 2334
Q ss_pred ccCCCCCCChHHHHHHHhcCCCceEEEEcce
Q 030179 141 FTETWRPGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
.|..|......+.+.....+|..++.+++-.
T Consensus 94 iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 94 VSVWRYLRDTVAALAGAAERGVPTMALTDSS 124 (187)
T ss_dssp ECCSSCCHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4555555444566666777888999998753
No 29
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=48.03 E-value=65 Score=23.31 Aligned_cols=103 Identities=10% Similarity=0.129 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHH------HhCCCcEEEECCccH-HHHH-HHcCC--------
Q 030179 65 MVEEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRA------KKLGIQVKAVHNASV-MNAV-GICGL-------- 127 (181)
Q Consensus 65 ~~~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~------~~~g~~v~iiPGiSs-~~a~-a~~g~-------- 127 (181)
..++.++.+.+.+.+ ++|.+.-.|.... ...++...+ ...|+++..+++-++ +.+. .-.+.
T Consensus 30 ~i~~~~~~i~~~i~~a~~I~i~G~G~S~~--~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 107 (199)
T 1x92_A 30 YIEQASLVMVNALLNEGKILSCGNGGSAG--DAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQI 107 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSTHHHH--HHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCchhHH--HHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHH
Confidence 345566666565555 7888887886432 333444555 346777777765433 2222 12221
Q ss_pred -CcccCCceeEEecccCCCCCCChHHHHHHHhcCCCceEEEEcce
Q 030179 128 -QLYRFGETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 128 -~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
+.-..++ .++..|..|......+.+.....+|..++.+++-.
T Consensus 108 ~~~~~~~D--vvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 108 RALGQPGD--VLLAISTSGNSANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp HHHCCTTC--EEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HhCCCCCC--EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 1111222 23344556655555666777777888899888753
No 30
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=46.43 E-value=10 Score=27.42 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=20.8
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCeEEEcCc
Q 030179 2 LYIIGLGLGDERDITLRGLEAVKKCDKVYIEAY 34 (181)
Q Consensus 2 l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~ 34 (181)
|.|||.||.+ ||....=+-+.-+|++++..
T Consensus 5 V~IIGaGpaG---L~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 5 IAIIGTGIAG---LSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp EEEECCSHHH---HHHHHHHHHTTCCEEEECSS
T ss_pred EEEECcCHHH---HHHHHHHHHCCCCEEEEECC
Confidence 7899999976 55554333345689999854
No 31
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=45.29 E-value=29 Score=26.29 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=31.5
Q ss_pred cCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 78 QESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 78 ~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
+++++++..+|--..|.-...+++.+++.|++|.++---++
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 45789998999877775566888899888888888854433
No 32
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=44.15 E-value=42 Score=25.89 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=42.2
Q ss_pred HHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEE-EC-CccHHHHHHHcCCCcccCCc--eeEEec
Q 030179 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKA-VH-NASVMNAVGICGLQLYRFGE--TVSIPF 140 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~i-iP-GiSs~~a~a~~g~~l~~~~~--~~~v~~ 140 (181)
+.+++...++.+++.++.+-+| |+..++++++.+..-++.+ +| +..+.+.+...|+++...++ .+.+.+
T Consensus 14 ~~iA~~A~~~V~~g~~IglgsG-----ST~~~~i~~L~~~~~~itv~VtnS~~~a~~l~~~gi~l~~l~~~~~iD~af 86 (224)
T 3kwm_A 14 KLAATEAAKSITTEITLGVGTG-----STVGFLIEELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYI 86 (224)
T ss_dssp HHHHHHHHTTCCSSEEEEECCS-----HHHHHHHHHGGGCTTTEEEEEESCHHHHHHHHHTTCCBCCHHHHCSEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEECCc-----HHHHHHHHHHHhhcCceEEEECCcHHHHHHHHHcCCeEEecCccccccEEE
Confidence 3456666666677888888888 5667788888664335554 44 23333345668998775433 344444
No 33
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=43.95 E-value=79 Score=24.65 Aligned_cols=60 Identities=17% Similarity=0.049 Sum_probs=37.0
Q ss_pred HHHHHHHHH-HccCCCEEEEecCCccccccHHHHHHHHHh----CCC-cEEEEC-CccHHHHHHHcCCCccc
Q 030179 67 EEKADKILS-ESQESNVAFLVVGDPFGATTHTDLVVRAKK----LGI-QVKAVH-NASVMNAVGICGLQLYR 131 (181)
Q Consensus 67 ~~~~~~i~~-~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~----~g~-~v~iiP-GiSs~~a~a~~g~~l~~ 131 (181)
+.+++...+ +.+++.++++-+| |+..++++++.+ .+. ++.++| +..+.+.+...|+++..
T Consensus 14 ~~iA~~Aa~~~I~dg~~IgLgsG-----ST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 80 (244)
T 2f8m_A 14 KIVAYKAVDEYVQSNMTIGLGTG-----STVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTT 80 (244)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCS-----TTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCh-----HHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEE
Confidence 456677777 7777899999999 455667776642 333 455443 33333444445888654
No 34
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=43.22 E-value=33 Score=26.13 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=29.6
Q ss_pred cCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHH
Q 030179 78 QESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (181)
Q Consensus 78 ~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~ 119 (181)
+++++++..+|-...|-....+++.+++.|++|.++---++.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 457888888997666653557888888888888888655443
No 35
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=41.17 E-value=67 Score=24.67 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHh----CCCc-EEEEC-CccHHHHHHHcCCCccc
Q 030179 66 VEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKK----LGIQ-VKAVH-NASVMNAVGICGLQLYR 131 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~----~g~~-v~iiP-GiSs~~a~a~~g~~l~~ 131 (181)
.+.+++...++.+++.++++-+| ++..++++++.+ .+.+ +.+++ +..+.+.++..|+++..
T Consensus 9 K~~IA~~Aa~~I~dg~~I~LgsG-----ST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~ 75 (227)
T 1uj6_A 9 KKEAAHAAIAYVQDGMVVGLGTG-----STARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVD 75 (227)
T ss_dssp HHHHHHHHHTTCCTTCEEEECCS-----HHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHHHCCCCCEEEEcCC-----HHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEE
Confidence 34566666676777889999888 455566666643 2323 55543 22233334566777653
No 36
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=40.19 E-value=81 Score=24.10 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhC--CCcEEEECCccHHHHHHHcCCCcccCCc--eeEEeccc
Q 030179 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKL--GIQVKAVHNASVMNAVGICGLQLYRFGE--TVSIPFFT 142 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~--g~~v~iiPGiSs~~a~a~~g~~l~~~~~--~~~v~~~~ 142 (181)
+.+++...++.+++.++++-+| ++..++++++.+. ++.+-|-.+..+.+.++..|+++...+. .+.+.+..
T Consensus 8 ~~IA~~Aa~~I~dg~~I~LdsG-----ST~~~la~~L~~~~~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~D~af~G 82 (219)
T 1m0s_A 8 KLAAQAALQYVKADRIVGVGSG-----STVNCFIEALGTIKDKIQGAVAASKESEELLRKQGIEVFNANDVSSLDIYVDG 82 (219)
T ss_dssp HHHHHHHGGGCCTTSEEEECCS-----HHHHHHHHHHHTTGGGSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEcCh-----HHHHHHHHHHhccCCCEEEEECChHHHHHHHHhCCCeEEEeCccccCCEEEEC
Confidence 4566666666677888888888 5666778888643 2332234444444445556777654332 34444433
No 37
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=39.61 E-value=1e+02 Score=22.08 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=56.0
Q ss_pred HHHHHHHHHHccC-CCEEEEecCCccccccHHHHHHHHH------hCCCcEEEECCccH-HHHH-HHcCC---------C
Q 030179 67 EEKADKILSESQE-SNVAFLVVGDPFGATTHTDLVVRAK------KLGIQVKAVHNASV-MNAV-GICGL---------Q 128 (181)
Q Consensus 67 ~~~~~~i~~~~~~-~~V~~l~~GDP~~~~~~~~l~~~~~------~~g~~v~iiPGiSs-~~a~-a~~g~---------~ 128 (181)
++..+.+.+.+.+ ++|.+.-.|.... ...++..++. ..|+++..+++-++ +.+. .-.+. .
T Consensus 28 ~~~~~~~~~~i~~a~~I~i~G~G~S~~--~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~ 105 (196)
T 2yva_A 28 SRAAMTLVQSLLNGNKILCCGNGTSAA--NAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRA 105 (196)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTHHHH--HHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEeCchhhH--HHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHh
Confidence 3455556665555 7888887886432 3334445555 56777777764322 2222 11221 1
Q ss_pred cccCCceeEEecccCCCCCCChHHHHHHHhcCCCceEEEEcce
Q 030179 129 LYRFGETVSIPFFTETWRPGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 129 l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
.-..+. .++..|..|......+.+.....+|..++.+++-.
T Consensus 106 ~~~~~D--vvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 106 LGHAGD--VLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp HCCTTC--EEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred cCCCCC--EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 111222 23344555655555667777777888999998753
No 38
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=37.81 E-value=72 Score=24.56 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=40.7
Q ss_pred HHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHh----CCC-cEEEEC-CccHHHHHHHcCCCcccCCc--eeEE
Q 030179 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKK----LGI-QVKAVH-NASVMNAVGICGLQLYRFGE--TVSI 138 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~----~g~-~v~iiP-GiSs~~a~a~~g~~l~~~~~--~~~v 138 (181)
+.+++...++.+++.++++-+| ++..++++++.+ .+. ++.++| +..+.+.++..|+++...+. .+.+
T Consensus 8 ~~IA~~Aa~~I~dg~~I~LdsG-----ST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~D~ 82 (229)
T 1lk5_A 8 KIAAKEALKFIEDDMVIGLGTG-----STTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDV 82 (229)
T ss_dssp HHHHHHHGGGCCTTCEEEECCS-----HHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCh-----HHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccCCE
Confidence 4566666666677888888888 556667777642 322 444443 33333344456877654332 3455
Q ss_pred ecccC
Q 030179 139 PFFTE 143 (181)
Q Consensus 139 ~~~~~ 143 (181)
.+...
T Consensus 83 af~Ga 87 (229)
T 1lk5_A 83 AVDGA 87 (229)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 54433
No 39
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=37.42 E-value=77 Score=24.69 Aligned_cols=67 Identities=10% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHHccC----CCEEEEecCCccccccHHHHHHHHHhCCCcEE-EE-CCccHHHHHHHcCCCcccCCc--eeEEec
Q 030179 69 KADKILSESQE----SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVK-AV-HNASVMNAVGICGLQLYRFGE--TVSIPF 140 (181)
Q Consensus 69 ~~~~i~~~~~~----~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~-ii-PGiSs~~a~a~~g~~l~~~~~--~~~v~~ 140 (181)
+++...++.++ +.++.|-+| |+..++++++.+..-++. ++ .+.-+.+.+...|+++...++ .+.+.+
T Consensus 18 aA~~A~~~V~d~~~~g~vIGLGtG-----ST~~~~i~~L~~~~~~i~~~V~tS~~t~~~~~~~Gi~l~~l~~~~~iD~a~ 92 (239)
T 3uw1_A 18 VGEAAARYVTDNVPQGAVIGVGTG-----STANCFIDALAAVKDRYRGAVSSSVATTERLKSHGIRVFDLNEIESLQVYV 92 (239)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECCS-----HHHHHHHHHHHTTGGGSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEEEE
T ss_pred HHHHHHHHhhccCcCCCEEEECcc-----HHHHHHHHHHHhhhccceEEeCCcHHHHHHHHHcCCcEEecccccccCEEE
Confidence 34444444444 889999888 667778888865421222 12 222222234678999776443 344443
No 40
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=37.25 E-value=1.2e+02 Score=22.59 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHH-Hcc-CCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHH-HHHcCCCcccCCceeEEe
Q 030179 63 REMVEEKADKILS-ESQ-ESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNA-VGICGLQLYRFGETVSIP 139 (181)
Q Consensus 63 ~~~~~~~~~~i~~-~~~-~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a-~a~~g~~l~~~~~~~~v~ 139 (181)
.+..++.++.|.+ ..+ .++|.++-.|... ....++...+...|.++..++....... ++. +. .+. .++
T Consensus 41 ~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~--~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~----~~-~~D--lvI 111 (220)
T 3etn_A 41 TDAYEKAVELIVEQIHRKKGKLVTSGMGKAG--QIAMNIATTFCSTGIPSVFLHPSEAQHGDLGI----LQ-END--LLL 111 (220)
T ss_dssp CTHHHHHHHHHHHHTTTTCCCEEEECSHHHH--HHHHHHHHHHHHTTCCEEECCTTGGGBTGGGG----CC-TTC--EEE
T ss_pred HHHHHHHHHHHHhHhhccCCEEEEEEecHHH--HHHHHHHHHHHhcCCcEEEeCCHHHHHhhhcc----CC-CCC--EEE
Confidence 3456677777665 222 3788888777643 2344555667778888888865433211 111 11 122 233
Q ss_pred cccCCCCCCChHHHHHHHhc--CCCceEEEEcc
Q 030179 140 FFTETWRPGSFYEKIKRNRS--LGLHTLCLLGG 170 (181)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~~--~~~~tlvlld~ 170 (181)
..|..|......+.+..... +|..++.+++-
T Consensus 112 ~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~ 144 (220)
T 3etn_A 112 LISNSGKTREIVELTQLAHNLNPGLKFIVITGN 144 (220)
T ss_dssp EECSSSCCHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 44555554444555555666 78888888864
No 41
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=36.49 E-value=1.1e+02 Score=21.66 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccCCCCCCChHHHHHHHhc
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTETWRPGSFYEKIKRNRS 159 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~ 159 (181)
++|.++-.|.... ...++...+...|.++..++.. . .+.-..+. .++..|..|......+.+.....
T Consensus 41 ~~I~i~G~G~S~~--~A~~~~~~l~~~g~~~~~~~~~---~------~~~~~~~d--~vi~iS~sG~t~~~~~~~~~ak~ 107 (180)
T 1jeo_A 41 KKIFIFGVGRSGY--IGRCFAMRLMHLGFKSYFVGET---T------TPSYEKDD--LLILISGSGRTESVLTVAKKAKN 107 (180)
T ss_dssp SSEEEECCHHHHH--HHHHHHHHHHHTTCCEEETTST---T------CCCCCTTC--EEEEEESSSCCHHHHHHHHHHHT
T ss_pred CEEEEEeecHHHH--HHHHHHHHHHHcCCeEEEeCCC---c------cccCCCCC--EEEEEeCCCCcHHHHHHHHHHHH
Confidence 6888877775432 3344555566677788776432 1 11111222 23344555554444566666677
Q ss_pred CCCceEEEEcce
Q 030179 160 LGLHTLCLLGGV 171 (181)
Q Consensus 160 ~~~~tlvlld~~ 171 (181)
+|..++.+++-.
T Consensus 108 ~g~~vi~IT~~~ 119 (180)
T 1jeo_A 108 INNNIIAIVCEC 119 (180)
T ss_dssp TCSCEEEEESSC
T ss_pred CCCcEEEEeCCC
Confidence 788999998864
No 42
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=36.46 E-value=1.1e+02 Score=22.37 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=32.8
Q ss_pred EecCCCCccchhHHHHHHHhhCCeEEEcCcccccccccccchhhhhHHHhCCcccc
Q 030179 5 IGLGLGDERDITLRGLEAVKKCDKVYIEAYTSLLSFGLSTDGLSTLEKLYGKPIAL 60 (181)
Q Consensus 5 VG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~ 60 (181)
+++=|.|++.|...-.++++++|+|+....++.-..-+.++ .+....++++.+
T Consensus 42 ~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~e---a~a~~~~~~l~~ 94 (172)
T 3kbq_A 42 GFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVE---GFAKCIGQDLRI 94 (172)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHH---HHHHHHTCCCEE
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccchHH---HHHHHcCCCeee
Confidence 34447788888888888899999999865543210002222 444445666655
No 43
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=36.32 E-value=83 Score=21.78 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHccC-CCEEEEe-cCCccccccHHHHHHHHHhCCCcEEEECCccHH
Q 030179 74 LSESQE-SNVAFLV-VGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (181)
Q Consensus 74 ~~~~~~-~~V~~l~-~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~ 119 (181)
++.... +-|.+|+ -|-|+-+ ...+.. +.+.+++++.|++--
T Consensus 55 i~~~d~~~GVLiL~DmGSp~n~--a~~l~~---~~~~~v~vI~gvnlp 97 (130)
T 3gx1_A 55 VVKLNPVKGVLILSDMGSLTSF--GNILTE---ELGIRTKTVTMVSTP 97 (130)
T ss_dssp HHTSCCTTCEEEEECSGGGGTH--HHHHHH---HHCCCEEEECSCCHH
T ss_pred HHhhCCCCCEEEEEeCCCHHHH--HHHHHH---hcCCCEEEEeCCCHH
Confidence 333443 4677776 7777432 112222 225689999999863
No 44
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=32.60 E-value=1.2e+02 Score=21.42 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEeccc
Q 030179 63 REMVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFT 142 (181)
Q Consensus 63 ~~~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~ 142 (181)
.+..++.++.+.+ .++|.++-.|.. +....++...+...|.++..++... .+.-..+. .++..|
T Consensus 24 ~~~i~~~~~~i~~---a~~I~i~G~G~S--~~~A~~~~~~l~~~g~~~~~~~~~~---------~~~~~~~d--~vI~iS 87 (186)
T 1m3s_A 24 NEEADQLADHILS---SHQIFTAGAGRS--GLMAKSFAMRLMHMGFNAHIVGEIL---------TPPLAEGD--LVIIGS 87 (186)
T ss_dssp HHHHHHHHHHHHH---CSCEEEECSHHH--HHHHHHHHHHHHHTTCCEEETTSTT---------CCCCCTTC--EEEEEC
T ss_pred HHHHHHHHHHHHc---CCeEEEEecCHH--HHHHHHHHHHHHhcCCeEEEeCccc---------ccCCCCCC--EEEEEc
Confidence 3445555554432 367877777754 2334455556667788888775431 12222222 233345
Q ss_pred CCCCCCChHHHHHHHhcCCCceEEEEcce
Q 030179 143 ETWRPGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
..|......+.+.....+|..++.+++-.
T Consensus 88 ~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 88 GSGETKSLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp SSSCCHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCCcHHHHHHHHHHHHCCCEEEEEECCC
Confidence 55554444566666677788888888753
No 45
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=31.96 E-value=1.2e+02 Score=23.21 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=36.6
Q ss_pred HHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHh----CCCcEEEECCcc-HHHHHHHcCCCcccC
Q 030179 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKK----LGIQVKAVHNAS-VMNAVGICGLQLYRF 132 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~----~g~~v~iiPGiS-s~~a~a~~g~~l~~~ 132 (181)
+.+++...++.+++.++++-+| |+..++++++.+ .+.++.++|--- +.+.+...|+++...
T Consensus 8 ~~iA~~A~~~I~~g~~IglgsG-----ST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~gi~v~~l 73 (226)
T 2pjm_A 8 LKVAKEAVKLVKDGMVIGLGTG-----STAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLVTL 73 (226)
T ss_dssp HHHHHHHGGGCCTTCEEEECCS-----HHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCBCCT
T ss_pred HHHHHHHHHHCCCCCEEEECCC-----HHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhcCCeEEee
Confidence 4456666666677888888888 455566666543 234566654322 223346788886653
No 46
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=31.60 E-value=59 Score=24.05 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=29.7
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
+++.+..+|-...| -...+++.+++.|+++.++---++
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A 40 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQHFDEVNILFSPSS 40 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGG
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhH
Confidence 57888889988877 566788888888889988855444
No 47
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=30.58 E-value=77 Score=23.25 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=26.0
Q ss_pred CEEEEecCCccccccH-HHHHHHHHhCCCcEEEEC-Cc
Q 030179 81 NVAFLVVGDPFGATTH-TDLVVRAKKLGIQVKAVH-NA 116 (181)
Q Consensus 81 ~V~~l~~GDP~~~~~~-~~l~~~~~~~g~~v~iiP-Gi 116 (181)
..+.+..|+|++.... ..+++.+++.|+++.+.. |.
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~ 108 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGF 108 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4566778999987553 567778888888887764 63
No 48
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=29.56 E-value=54 Score=23.38 Aligned_cols=9 Identities=11% Similarity=-0.392 Sum_probs=6.5
Q ss_pred CEEEEecCC
Q 030179 81 NVAFLVVGD 89 (181)
Q Consensus 81 ~V~~l~~GD 89 (181)
.+.+.+.|-
T Consensus 34 ~~~l~TNG~ 42 (182)
T 3can_A 34 HRAVDTTLL 42 (182)
T ss_dssp CEEEECTTC
T ss_pred cEEEECCCC
Confidence 677777774
No 49
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=28.96 E-value=1.2e+02 Score=20.57 Aligned_cols=46 Identities=7% Similarity=0.095 Sum_probs=26.1
Q ss_pred HHHHHHHHccCC-CEEEEecCCccccccHHHHHHHHHhCCCcEEEEC
Q 030179 69 KADKILSESQES-NVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVH 114 (181)
Q Consensus 69 ~~~~i~~~~~~~-~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiP 114 (181)
+.+.+.+.++.+ +|-++..+.+..........+.+.+.|+++...+
T Consensus 42 i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 42 IMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 334444444444 7777776655432223344566777888888764
No 50
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=28.44 E-value=32 Score=28.39 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=16.1
Q ss_pred hhHHHHHHHhhCCeEEEc
Q 030179 15 ITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 15 lT~~A~~~L~~advv~~~ 32 (181)
-+++|+++|++||+|++.
T Consensus 178 a~p~al~AI~~AD~Ivlg 195 (341)
T 2p0y_A 178 AVQPVIDAIMAADQIVLG 195 (341)
T ss_dssp CCHHHHHHHHHCSEEEEC
T ss_pred CCHHHHHHHHhCCEEEEC
Confidence 589999999999998874
No 51
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=28.24 E-value=33 Score=27.91 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.1
Q ss_pred hhHHHHHHHhhCCeEEEc
Q 030179 15 ITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 15 lT~~A~~~L~~advv~~~ 32 (181)
-+++++++|++||+|++.
T Consensus 173 a~p~vl~AI~~AD~Ivlg 190 (311)
T 3c3d_A 173 ISPKVLEAFEKEENILIG 190 (311)
T ss_dssp CCHHHHHHHHHCCEEEEC
T ss_pred CCHHHHHHHHhCCEEEEC
Confidence 588999999999999874
No 52
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=27.89 E-value=59 Score=24.33 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=30.5
Q ss_pred cCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 78 QESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 78 ~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
+++++.+..+|-...|- ...+++.+++.|+++.++---++
T Consensus 7 ~~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A 46 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTA 46 (194)
T ss_dssp GGCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhH
Confidence 45789999999887774 45788888888888888855444
No 53
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=26.29 E-value=1.5e+02 Score=21.51 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHHHHHHHcCCCcccCCceeEEecccC
Q 030179 64 EMVEEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVMNAVGICGLQLYRFGETVSIPFFTE 143 (181)
Q Consensus 64 ~~~~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~~a~a~~g~~l~~~~~~~~v~~~~~ 143 (181)
+.+++.++.|.+ .++|.+.-.|.... ...++..++...|.++..++... .+.-..+. .++..|.
T Consensus 35 ~~l~~~~~~i~~---a~~I~i~G~G~S~~--~A~~~~~~l~~~g~~~~~~~~~~---------~~~~~~~D--vvI~iS~ 98 (200)
T 1vim_A 35 ETVGEMIKLIDS---ARSIFVIGAGRSGY--IAKAFAMRLMHLGYTVYVVGETV---------TPRITDQD--VLVGISG 98 (200)
T ss_dssp HHHHHHHHHHHH---SSCEEEECSHHHHH--HHHHHHHHHHHTTCCEEETTSTT---------CCCCCTTC--EEEEECS
T ss_pred HHHHHHHHHHhc---CCEEEEEEecHHHH--HHHHHHHHHHhcCCeEEEeCCcc---------ccCCCCCC--EEEEEeC
Confidence 344444444432 36787777775432 44455566666777777764321 11111222 2334455
Q ss_pred CCCCCChHHHHHHHhcCCCceEEEEcce
Q 030179 144 TWRPGSFYEKIKRNRSLGLHTLCLLGGV 171 (181)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~tlvlld~~ 171 (181)
.|......+.+.....++..++.+++-.
T Consensus 99 SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 126 (200)
T 1vim_A 99 SGETTSVVNISKKAKDIGSKLVAVTGKR 126 (200)
T ss_dssp SSCCHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 5655444566666667788888888753
No 54
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=26.24 E-value=2.1e+02 Score=22.51 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=42.3
Q ss_pred HHHHHHHHHH-Hcc--CCCEEEEecCCccccccHHHHHHHHHhC----CC-----cEEEEC-CccHHHHHHHcCCCcccC
Q 030179 66 VEEKADKILS-ESQ--ESNVAFLVVGDPFGATTHTDLVVRAKKL----GI-----QVKAVH-NASVMNAVGICGLQLYRF 132 (181)
Q Consensus 66 ~~~~~~~i~~-~~~--~~~V~~l~~GDP~~~~~~~~l~~~~~~~----g~-----~v~iiP-GiSs~~a~a~~g~~l~~~ 132 (181)
.+.+++...+ +.+ ++.++++-+| ++..++++++.+. +. ++.++| +..+.+.+...|+++...
T Consensus 22 K~~IA~~Aa~~~I~~~dg~~IgLgsG-----ST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~a~~l~~~gi~v~~l 96 (264)
T 1xtz_A 22 KRAAAYRAVDENLKFDDHKIIGIGSG-----STVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSI 96 (264)
T ss_dssp HHHHHHHHHHHHCCTTTCCEEEECCC-----SSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHHHHHHHHTTCEECCT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEcCh-----HHHHHHHHHHhHhhhccccccccCCEEEECCcHHHHHHHHHCCCeEEEe
Confidence 4556777777 777 7889999999 5566777777432 11 255544 344444445568776543
Q ss_pred Cc--eeEEeccc
Q 030179 133 GE--TVSIPFFT 142 (181)
Q Consensus 133 ~~--~~~v~~~~ 142 (181)
.. .+.+.+..
T Consensus 97 ~~~~~iD~afdG 108 (264)
T 1xtz_A 97 EQYPRIDIAFDG 108 (264)
T ss_dssp TTCCSEEEEEEC
T ss_pred hhcCcCCEEEEC
Confidence 22 34554433
No 55
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=25.42 E-value=1.6e+02 Score=20.56 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCEEEEe-cCCccccccHHHHHHHHHh-CCCcEEEECCccHH
Q 030179 80 SNVAFLV-VGDPFGATTHTDLVVRAKK-LGIQVKAVHNASVM 119 (181)
Q Consensus 80 ~~V~~l~-~GDP~~~~~~~~l~~~~~~-~g~~v~iiPGiSs~ 119 (181)
+-|.+|+ -|-|+-+ ...+.. .+.+++++.|++--
T Consensus 64 ~GVLiL~DmGSp~n~------a~~l~~~~~~~v~vI~gvnlp 99 (139)
T 3gdw_A 64 NGILLLTDMGSLNSF------GNMLFEETGIRTKAITMTSTM 99 (139)
T ss_dssp TCEEEEECSGGGGGH------HHHHHHHHCCCEEEECSCCHH
T ss_pred CCEEEEEeCCCHHHH------HHHHHHhhCCCEEEEeCCCHH
Confidence 4577776 7777432 222222 25689999999963
No 56
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=25.40 E-value=1.1e+02 Score=20.23 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHccCCCEEEEecCCccccc--cHHHHHHHHHhCCCcEEEEC
Q 030179 72 KILSESQESNVAFLVVGDPFGAT--THTDLVVRAKKLGIQVKAVH 114 (181)
Q Consensus 72 ~i~~~~~~~~V~~l~~GDP~~~~--~~~~l~~~~~~~g~~v~iiP 114 (181)
.+.+..+..+|++.+-|.|...+ -.....+.+.+.|++++.+.
T Consensus 8 ~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~d 52 (111)
T 3zyw_A 8 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD 52 (111)
T ss_dssp HHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEE
Confidence 34444556788888877775322 12233455677888877763
No 57
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=25.31 E-value=1.4e+02 Score=23.39 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccCCCEEEEecCCccccccHHHHHHHHHh---CCCcEEEECCcc-HHHHHHHcCCCcccCCc
Q 030179 67 EEKADKILSESQESNVAFLVVGDPFGATTHTDLVVRAKK---LGIQVKAVHNAS-VMNAVGICGLQLYRFGE 134 (181)
Q Consensus 67 ~~~~~~i~~~~~~~~V~~l~~GDP~~~~~~~~l~~~~~~---~g~~v~iiPGiS-s~~a~a~~g~~l~~~~~ 134 (181)
+.+++...++.+++.++.|-+| |+..++++++.+ .|.++.++|--- +.+.+...|+++...++
T Consensus 29 ~~iA~~A~~~V~dg~vIgLGsG-----ST~~~~i~~L~~~~~~gl~ItvVttS~~ta~~l~~~GI~l~~l~~ 95 (255)
T 3hhe_A 29 KMAALKALEFVEDDMRLGIGSG-----STVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGVPISTLEK 95 (255)
T ss_dssp HHHHHHHHTTCCTTEEEEECCS-----HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTCCBCCTTT
T ss_pred HHHHHHHHHhCCCCCEEEECCc-----HHHHHHHHHHHHhhccCCcEEEEcCCHHHHHHHHHcCCcEEeccc
Confidence 3456666666677888888888 455566666532 355666654321 22234568999776543
No 58
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=25.00 E-value=40 Score=27.56 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.6
Q ss_pred chhHHHHHHHhhCCeEEEc
Q 030179 14 DITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 14 ~lT~~A~~~L~~advv~~~ 32 (181)
..+++++++|++||+|++.
T Consensus 167 ~~~p~~l~AI~~AD~Ivlg 185 (323)
T 2o2z_A 167 KPLREGLEAIRKADVIVIG 185 (323)
T ss_dssp CCCHHHHHHHHHCSEEEEC
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 4788999999999998874
No 59
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=24.74 E-value=41 Score=27.65 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=16.7
Q ss_pred chhHHHHHHHhhCCeEEEc
Q 030179 14 DITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 14 ~lT~~A~~~L~~advv~~~ 32 (181)
..+++++++|++||+|++.
T Consensus 166 ~~~p~~l~AI~~AD~Ivlg 184 (332)
T 2ppv_A 166 EPMNEAIEALEQADLIVLG 184 (332)
T ss_dssp CCCHHHHHHHHHCSEEEEC
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 4788999999999998874
No 60
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=24.23 E-value=1.9e+02 Score=22.01 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=16.8
Q ss_pred HHHHHhCCCcEEEECCccHHHHHHHcCCC
Q 030179 100 VVRAKKLGIQVKAVHNASVMNAVGICGLQ 128 (181)
Q Consensus 100 ~~~~~~~g~~v~iiPGiSs~~a~a~~g~~ 128 (181)
++.+++.|+++-| =|.....+|.+.|++
T Consensus 147 i~~l~~~G~~vVV-G~~~~~~~A~~~Gl~ 174 (225)
T 2pju_A 147 INELKANGTEAVV-GAGLITDLAEEAGMT 174 (225)
T ss_dssp HHHHHHTTCCEEE-ESHHHHHHHHHTTSE
T ss_pred HHHHHHCCCCEEE-CCHHHHHHHHHcCCc
Confidence 4455677877744 343445566777876
No 61
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=24.00 E-value=85 Score=23.06 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=29.3
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASV 118 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs 118 (181)
+++.+..+|-...|- ...+++.+++.|+++.++---++
T Consensus 6 k~IllgvTGs~aa~k-~~~ll~~L~~~g~~V~vv~T~~A 43 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN-ISHYIIELKSKFDEVNVIASTNG 43 (175)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHTTTCSEEEEEECTGG
T ss_pred CEEEEEEeCHHHHHH-HHHHHHHHHHCCCEEEEEECcCH
Confidence 678888888887774 56778888888888888865555
No 62
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=23.68 E-value=34 Score=28.02 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=16.3
Q ss_pred chhHHHHHHHhhCCeEEEc
Q 030179 14 DITLRGLEAVKKCDKVYIE 32 (181)
Q Consensus 14 ~lT~~A~~~L~~advv~~~ 32 (181)
.-+++++++|++||+|++.
T Consensus 173 ~a~p~al~AI~~AD~Ivlg 191 (326)
T 2q7x_A 173 LASRRVVQTILESDMIVLG 191 (326)
T ss_dssp CBCSHHHHHHHHCSEEEEC
T ss_pred CCCHHHHHHHHhCCEEEEC
Confidence 4568999999999998874
No 63
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=23.55 E-value=2e+02 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCcc
Q 030179 66 VEEKADKILSESQESNVAFLVVGDPF 91 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~~V~~l~~GDP~ 91 (181)
.++..+.+.+.++.+++++++++..+
T Consensus 402 ~~eAv~~a~~~a~~gD~VLlspa~as 427 (451)
T 3lk7_A 402 VRDAVHKAYEVAQQGDVILLSPANAS 427 (451)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCSSCS
T ss_pred HHHHHHHHHHhCCCCCEEEEcCcCcc
Confidence 45556666666666788888877665
No 64
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=22.63 E-value=1.6e+02 Score=23.36 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHccCC-CEEEEecCC-cccc---ccHHHHHHHHHh-CCCcEEEECCccHHH---HHHHcCCC
Q 030179 66 VEEKADKILSESQES-NVAFLVVGD-PFGA---TTHTDLVVRAKK-LGIQVKAVHNASVMN---AVGICGLQ 128 (181)
Q Consensus 66 ~~~~~~~i~~~~~~~-~V~~l~~GD-P~~~---~~~~~l~~~~~~-~g~~v~iiPGiSs~~---a~a~~g~~ 128 (181)
.+++.+.+.+..+.+ +-+++..|+ |.++ .....+++.+++ .++.+.+-||..+-. .+..+|+.
T Consensus 93 ~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~L~~aG~~ 164 (350)
T 3t7v_A 93 MEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGAN 164 (350)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHHHHHcCCC
Confidence 455555555443332 334447776 8765 222344555543 378899999976532 33455654
No 65
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=21.87 E-value=1.8e+02 Score=22.81 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcc-CCCEEEEecCC-cccc-ccHHHHHHHHHhCCCcEEEECCccHHH---HHHHcCCC
Q 030179 67 EEKADKILSESQ-ESNVAFLVVGD-PFGA-TTHTDLVVRAKKLGIQVKAVHNASVMN---AVGICGLQ 128 (181)
Q Consensus 67 ~~~~~~i~~~~~-~~~V~~l~~GD-P~~~-~~~~~l~~~~~~~g~~v~iiPGiSs~~---a~a~~g~~ 128 (181)
+++.+.+.+..+ +-+-+.+..|. |.+. .....+++.+++.++.+.+-+|...-. .+..+|+.
T Consensus 87 eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 87 EEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGAD 154 (348)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCC
Confidence 444444433322 22444557887 7654 445566777777788888888876533 23445654
No 66
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=21.65 E-value=1.2e+02 Score=21.19 Aligned_cols=39 Identities=5% Similarity=0.115 Sum_probs=31.6
Q ss_pred CCEEEEecCCccccccHHHHHHHHHhCCCcEEEECCccHH
Q 030179 80 SNVAFLVVGDPFGATTHTDLVVRAKKLGIQVKAVHNASVM 119 (181)
Q Consensus 80 ~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~iiPGiSs~ 119 (181)
=++.++=.|.-..+ ....+.+.+++.|+.+|+-+=-.+.
T Consensus 68 pevliiGTG~~~~~-l~p~l~~~l~~~GI~vE~M~T~aAc 106 (135)
T 2fvt_A 68 IDTLIVGTGADVWI-APRQLREALRGVNVVLDTMQTGPAI 106 (135)
T ss_dssp CSEEEEECTTSCCC-CCHHHHHHHHTTTCEEEEECHHHHH
T ss_pred CCEEEEcCCCCCCc-CCHHHHHHHHHcCCEEEEeCHHHHH
Confidence 38999999999876 5568889999999999997655443
No 67
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=21.23 E-value=98 Score=21.40 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=10.9
Q ss_pred cchhHHHHHHHh----hCCeEEEcC
Q 030179 13 RDITLRGLEAVK----KCDKVYIEA 33 (181)
Q Consensus 13 ~~lT~~A~~~L~----~advv~~~~ 33 (181)
+.||.+..+.+. +.|+++...
T Consensus 52 ~~l~~~~l~~l~~~~p~pevliiGt 76 (128)
T 2fi9_A 52 PVPTQEDISRVLEESDQIEVLLIGT 76 (128)
T ss_dssp SSCCTGGGHHHHHTGGGCSEEEEEC
T ss_pred CCCCHHHHHHHHhcCCCCCEEEECC
Confidence 445555554442 256776643
No 68
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=20.76 E-value=52 Score=20.34 Aligned_cols=26 Identities=35% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHHHHccCCCEEEEecCCcccccc
Q 030179 70 ADKILSESQESNVAFLVVGDPFGATT 95 (181)
Q Consensus 70 ~~~i~~~~~~~~V~~l~~GDP~~~~~ 95 (181)
.++.++..++++|++.+.|+-.|.+.
T Consensus 7 LdktL~~WKg~rvAv~vg~ehSFtGi 32 (71)
T 1ycy_A 7 LEKVLKEWKGHKVAVSVGGDHSFTGT 32 (71)
T ss_dssp HHHHHHHHTTSEEEEEEC----CEEE
T ss_pred HHHHHHHhCCcEEEEEecCcceeeee
Confidence 34455567888999999999888764
Done!