BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030180
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
           The Virulence Factor Choline Binding Protein E From
           Streptococcus Pneumoniae
 pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
           The Virulence Factor Choline Binding Protein E From
           Streptococcus Pneumoniae
          Length = 308

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 103 LVDSFYGTDRGLNATSETRAEIVELITQLEA 133
           L D+ YG D+ L   +ET   +++ ITQ +A
Sbjct: 121 LWDNLYGYDKVLQTATETGVSVIQNITQGDA 151


>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
           Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
           Pneumoniae
          Length = 547

 Score = 27.3 bits (59), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 103 LVDSFYGTDRGLNATSETRAEIVELITQLEA 133
           L D+ YG D+ L   +ET   +++ ITQ +A
Sbjct: 122 LWDNLYGYDKVLQTATETGVSVIQNITQGDA 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,150,023
Number of Sequences: 62578
Number of extensions: 125085
Number of successful extensions: 303
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 5
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)