Query 030180
Match_columns 181
No_of_seqs 138 out of 258
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:47:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 99.8 1.8E-20 3.8E-25 151.0 6.6 83 97-179 1-83 (198)
2 TIGR02116 toxin_Txe_YoeB toxin 75.6 7.5 0.00016 27.5 4.8 43 117-162 16-71 (80)
3 PF05015 Plasmid_killer: Plasm 41.8 70 0.0015 23.5 4.9 56 104-159 10-81 (93)
4 PF05973 Gp49: Phage derived p 37.8 91 0.002 22.2 4.9 42 116-158 6-49 (91)
5 TIGR00053 addiction module tox 31.9 51 0.0011 23.4 2.7 42 119-160 23-75 (89)
6 PF12283 Protein_K: Bacterioph 31.1 1.2E+02 0.0027 21.2 4.4 36 96-134 5-41 (56)
7 TIGR02530 flg_new flagellar op 30.8 62 0.0013 25.0 3.2 27 111-137 27-53 (96)
8 cd03715 RT_ZFREV_like RT_ZFREV 28.5 1.1E+02 0.0023 24.9 4.4 44 112-155 5-56 (210)
9 PRK09697 protein secretion pro 24.3 71 0.0015 25.9 2.5 43 67-111 96-138 (139)
10 PF07240 Turandot: Stress-indu 24.1 3.1E+02 0.0067 20.7 5.8 49 100-151 12-60 (85)
11 PF15469 Sec5: Exocyst complex 22.8 1.5E+02 0.0033 23.7 4.3 42 93-141 134-175 (182)
12 PHA00097 K protein K 22.7 2.1E+02 0.0046 20.1 4.3 36 96-134 5-41 (56)
13 PF06769 Plasmid_Txe: Plasmid 22.2 1.5E+02 0.0033 21.8 3.8 42 117-161 16-70 (80)
14 smart00550 Zalpha Z-DNA-bindin 20.1 2E+02 0.0043 19.9 3.8 54 97-154 5-65 (68)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.82 E-value=1.8e-20 Score=151.05 Aligned_cols=83 Identities=37% Similarity=0.591 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCceEEEEcccchhhHHHhhccccccCCCc
Q 030180 97 DNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVVKGNIAIGEGGG 176 (181)
Q Consensus 97 ~~lK~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNPtp~P~~a~~lL~G~WrLlYTT~~ell~L~~~~~~~G~~~G 176 (181)
+++|++||+++++++||+.+++++|++|+++|++||++||++.|+++.++|+|+|+|+|||..++++++......+.++|
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~ 80 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG 80 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence 47899999999999999999999999999999999999999999986699999999999999999977654333446788
Q ss_pred CCC
Q 030180 177 DIS 179 (181)
Q Consensus 177 di~ 179 (181)
+|.
T Consensus 81 ~v~ 83 (198)
T PF04755_consen 81 RVF 83 (198)
T ss_pred ceE
Confidence 775
No 2
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=75.59 E-value=7.5 Score=27.53 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC-----CCCCcccCCCc--------eEEEEcccchhhH
Q 030180 117 TSETRAEIVELITQLEAKNPTP-----APTEALTLLNA--------KWILVHIFFRFVS 162 (181)
Q Consensus 117 s~~qR~~I~elI~qLEalNPtp-----~P~~a~~lL~G--------~WrLlYTT~~ell 162 (181)
.++.+.+|.++|.+|+ .||.+ .++.. .+.| .||++|+=..+.+
T Consensus 16 ~~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G--~~~g~~r~rig~dyRIIY~i~~~~~ 71 (80)
T TIGR02116 16 DKKLKKKINELIKDVR-RDPFKGKGKPEPLKG--DLSGYWSRRITDEHRLVYRVTDDEV 71 (80)
T ss_pred CHHHHHHHHHHHHHHH-cCCCCCCCCcccCCC--CCCCcEEEEcCCCeEEEEEEECCEE
Confidence 3578899999999887 57764 22321 1333 6888888544433
No 3
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=41.82 E-value=70 Score=23.48 Aligned_cols=56 Identities=14% Similarity=0.323 Sum_probs=32.2
Q ss_pred HHHhccCCcCCCCCHHHHHHHHHHHHHHHhcC-------C---CCCCCCc------ccCCCceEEEEcccch
Q 030180 104 VDSFYGTDRGLNATSETRAEIVELITQLEAKN-------P---TPAPTEA------LTLLNAKWILVHIFFR 159 (181)
Q Consensus 104 L~ai~gt~RGl~As~~qR~~I~elI~qLEalN-------P---tp~P~~a------~~lL~G~WrLlYTT~~ 159 (181)
|+.+..+++-....++-...+...+++|++.. | ...++.. +=-++|.|||+|.-..
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa~~~~dl~~~p~~r~h~L~G~~~g~~Si~i~~~~RliF~~~~ 81 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAATSLEDLRSPPSNRLHKLKGDRKGQWSIRINGNWRLIFRFED 81 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhCCCHHHHhcCcCCCcccccCCCCCcEEEEeCCCEEEEEEEeC
Confidence 44455454434456666777777777777652 1 1233321 2337889999987543
No 4
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=37.76 E-value=91 Score=22.15 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCcccCC--CceEEEEcccc
Q 030180 116 ATSETRAEIVELITQLEAKNPTPAPTEALTLL--NAKWILVHIFF 158 (181)
Q Consensus 116 As~~qR~~I~elI~qLEalNPtp~P~~a~~lL--~G~WrLlYTT~ 158 (181)
.+...+++|...+..|+..+|...+-. ...| +|-|+|.....
T Consensus 6 L~~~~~~~i~~~l~~l~~~G~~l~~~~-~k~l~~~~i~ElR~~~~ 49 (91)
T PF05973_consen 6 LPDKERAKILAQLERLEEHGPSLGEPL-FKHLKGDGIYELRVRGG 49 (91)
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCCc-ccccCcCCeEEEEEeec
Confidence 367788999999999999985432222 2334 47777776433
No 5
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=31.87 E-value=51 Score=23.36 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-----CCCcc------cCCCceEEEEcccchh
Q 030180 119 ETRAEIVELITQLEAKNPTPA-----PTEAL------TLLNAKWILVHIFFRF 160 (181)
Q Consensus 119 ~qR~~I~elI~qLEalNPtp~-----P~~a~------~lL~G~WrLlYTT~~e 160 (181)
.++.+|.++|..|..-+|.|. ++... =-+.|.||++|.=..+
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~~g~~r~rv~~~~Riiy~i~~~ 75 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPWKGFRRCHIKPDVVLIYKVKDD 75 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCcCCCEEEeeCCCEEEEEEECCC
Confidence 566788888888877444443 34311 0123677788874443
No 6
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=31.07 E-value=1.2e+02 Score=21.23 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhccCCc-CCCCCHHHHHHHHHHHHHHHhc
Q 030180 96 IDNLKKALVDSFYGTDR-GLNATSETRAEIVELITQLEAK 134 (181)
Q Consensus 96 ~~~lK~~LL~ai~gt~R-Gl~As~~qR~~I~elI~qLEal 134 (181)
.--+|++||-+++..|| |+.+.-+ +|.....+||.+
T Consensus 5 ~tli~qellll~yelnrsgllvene---~i~~~l~~le~l 41 (56)
T PF12283_consen 5 TTLIKQELLLLTYELNRSGLLVENE---EIQSQLKQLEKL 41 (56)
T ss_pred HHHHHHHHHHHHHHhcccccccccH---HHHHHHHHHHHH
Confidence 45689999999999998 7776544 455556666653
No 7
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=30.84 E-value=62 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=25.1
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030180 111 DRGLNATSETRAEIVELITQLEAKNPT 137 (181)
Q Consensus 111 ~RGl~As~~qR~~I~elI~qLEalNPt 137 (181)
.||+..++++-++|++.|.+.+..+-.
T Consensus 27 ~R~I~l~~~~~~~i~~av~~A~~KG~k 53 (96)
T TIGR02530 27 ERNISINPDDWKKLLEAVEEAESKGVK 53 (96)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 699999999999999999999998765
No 8
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=28.47 E-value=1.1e+02 Score=24.95 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=31.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCC----cccCCCc-eEEEEc
Q 030180 112 RGLNATSETRAEIVELITQLEAKN---PTPAPTE----ALTLLNA-KWILVH 155 (181)
Q Consensus 112 RGl~As~~qR~~I~elI~qLEalN---Ptp~P~~----a~~lL~G-~WrLlY 155 (181)
+....++++++.+.+.|.+|+..+ |...|-. -..+=+| +||++.
T Consensus 5 ~~~~~~~~~~~~~~~~v~~ll~~G~I~~~~s~~~sp~~~V~Kk~g~~~R~~v 56 (210)
T cd03715 5 KQYPLPREAREGITPHIQELLEAGILVPCQSPWNTPILPVKKPGGNDYRMVQ 56 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeECCCCCCCCceEEEEeCCCCcceEEE
Confidence 345678999999999999999876 4333322 2234488 999873
No 9
>PRK09697 protein secretion protein GspB; Provisional
Probab=24.30 E-value=71 Score=25.93 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=20.6
Q ss_pred CCCCCCCcccccCCcccccccCCCcchHHHHHHHHHHHHHhccCC
Q 030180 67 DDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTD 111 (181)
Q Consensus 67 ~dewg~~~~~~~~~~~~~ae~~~~~~~~~~~~lK~~LL~ai~gt~ 111 (181)
|||-|...+. .|+....+|...++.++-..||+++-+++...+
T Consensus 96 edE~gvavE~--~Pss~~~~E~~~EE~D~~A~Lr~RVK~A~~ELe 138 (139)
T PRK09697 96 EDEPGVAVEN--APSSSEDEENTVEESDEKAGLRERVKNALNELE 138 (139)
T ss_pred cccccccccc--CCcccCCCcccccccccchHHHHHHHHHHHHhc
Confidence 7787765542 122122222112233445666666666665544
No 10
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=24.09 E-value=3.1e+02 Score=20.72 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=35.7
Q ss_pred HHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccCCCceE
Q 030180 100 KKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKW 151 (181)
Q Consensus 100 K~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNPtp~P~~a~~lL~G~W 151 (181)
=.+|++.-..--.-+..++++|++|+++|.+-+..|- -.+..+.--|.|
T Consensus 12 i~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~---lVDGvPaQGG~~ 60 (85)
T PF07240_consen 12 IQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN---LVDGVPAQGGFW 60 (85)
T ss_pred HHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh---cccCcCCCCCch
Confidence 4566666555555667889999999999999999986 345555455555
No 11
>PF15469 Sec5: Exocyst complex component Sec5
Probab=22.80 E-value=1.5e+02 Score=23.67 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 030180 93 VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPT 141 (181)
Q Consensus 93 ~~~~~~lK~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNPtp~P~ 141 (181)
+..++.+|..|.+.+...+ ....+..++|..|=.++++.+|.
T Consensus 134 e~ii~~~r~~l~~~L~~~~-------~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 134 EKIIEEFREKLWEKLLSPP-------SSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred HHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHhCCCCCCHH
Confidence 5667889999999888776 45556778888888889988886
No 12
>PHA00097 K protein K
Probab=22.68 E-value=2.1e+02 Score=20.06 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhccCCc-CCCCCHHHHHHHHHHHHHHHhc
Q 030180 96 IDNLKKALVDSFYGTDR-GLNATSETRAEIVELITQLEAK 134 (181)
Q Consensus 96 ~~~lK~~LL~ai~gt~R-Gl~As~~qR~~I~elI~qLEal 134 (181)
.--++++||-+.+..|| |+.+.-+ +|.....+||.+
T Consensus 5 ttli~qelllltyelnrsgllvene---eiqs~lk~le~l 41 (56)
T PHA00097 5 TTLILQELLLLTYELNRSGLLVENE---EIQSQLKKLEKL 41 (56)
T ss_pred hHHHHHHHHHHHHhhccccceeccH---HHHHHHHHHHHH
Confidence 34578999999999988 7776444 445555566643
No 13
>PF06769 Plasmid_Txe: Plasmid encoded toxin Txe; InterPro: IPR009614 The Axe-Txe pair in Enterococcus faecium (Streptococcus faecium) and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This family describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to IPR006442 from INTERPRO [].; GO: 0004519 endonuclease activity, 0006401 RNA catabolic process; PDB: 3OEI_L 2A6R_F 2A6Q_E 2A6S_D.
Probab=22.17 E-value=1.5e+02 Score=21.81 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHhcCC-----CCCCCCcccCCCceE--------EEEcccchhh
Q 030180 117 TSETRAEIVELITQLEAKNP-----TPAPTEALTLLNAKW--------ILVHIFFRFV 161 (181)
Q Consensus 117 s~~qR~~I~elI~qLEalNP-----tp~P~~a~~lL~G~W--------rLlYTT~~el 161 (181)
.......|.++|..|.. || .|+|+. ..+.|-| ||+|+=..+.
T Consensus 16 d~kl~kki~~li~~i~r-~P~~G~gkpE~Lk--~~~~g~~SRRI~~~hRLVY~v~~~~ 70 (80)
T PF06769_consen 16 DKKLLKKINKLIKEIKR-NPFTGIGKPEPLK--GDLSGYWSRRINKKHRLVYEVDDDT 70 (80)
T ss_dssp -HHHHHHHHHHHHHHHH-STTSSTT--EE-S--GGGTTEEEEESSSSEEEEEEEESSE
T ss_pred CHHHHHHHHHHHHHHHh-cccCCCCCCcccc--cCCCCeEEEEcCCCceEEEEEeCCE
Confidence 34567889999999986 45 334554 2366777 6888755443
No 14
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=20.09 E-value=2e+02 Score=19.85 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhccCCc-CCCCCH------HHHHHHHHHHHHHHhcCCCCCCCCcccCCCceEEEE
Q 030180 97 DNLKKALVDSFYGTDR-GLNATS------ETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 154 (181)
Q Consensus 97 ~~lK~~LL~ai~gt~R-Gl~As~------~qR~~I~elI~qLEalNPtp~P~~a~~lL~G~WrLl 154 (181)
...++++|..+..-+. |+.+.. -.+..|..++..||..+=--.- ..-.+.|+|-
T Consensus 5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~----~~~~~~W~i~ 65 (68)
T smart00550 5 DSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQ----GGTPPLWKLT 65 (68)
T ss_pred hHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec----CCCCCceEee
Confidence 4567888888886644 565432 3456799999999998753211 1133788874
Done!