Query 030180
Match_columns 181
No_of_seqs 138 out of 258
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a6s_A Toxin YOEB; YEFM, antit 57.1 25 0.00087 23.0 5.4 42 118-160 21-73 (84)
2 3oei_C RELK (toxin RV3358); to 51.0 15 0.00051 26.6 3.6 44 117-161 32-86 (96)
3 1z8m_A Conserved hypothetical 46.2 15 0.0005 24.4 2.7 40 122-161 25-75 (88)
4 4fxi_A MRNA interferase RELE; 46.0 29 0.00099 24.7 4.5 45 117-162 19-71 (95)
5 2khe_A Toxin RELE, toxin-like 42.5 33 0.0011 21.9 4.0 43 117-160 19-72 (89)
6 1ug7_A 2610208M17RIK protein; 37.8 14 0.00049 28.8 1.8 55 63-133 25-79 (128)
7 1wmi_A RELE, hypothetical prot 36.6 18 0.00063 23.2 2.0 21 117-138 19-39 (90)
8 2kvu_A MKL/myocardin-like prot 33.4 59 0.002 23.0 4.3 40 93-138 28-67 (75)
9 2otr_A Hypothetical protein HP 26.5 63 0.0021 21.8 3.4 39 122-160 25-74 (98)
10 3p42_A Predicted protein; beta 23.4 1.4E+02 0.0047 24.5 5.5 66 93-161 51-129 (236)
11 3g5o_B Uncharacterized protein 22.8 80 0.0027 22.1 3.5 44 117-161 34-85 (102)
No 1
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=57.09 E-value=25 Score=22.99 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-----CCCCc------ccCCCceEEEEcccchh
Q 030180 118 SETRAEIVELITQLEAKNPTP-----APTEA------LTLLNAKWILVHIFFRF 160 (181)
Q Consensus 118 ~~qR~~I~elI~qLEalNPtp-----~P~~a------~~lL~G~WrLlYTT~~e 160 (181)
......|.++|+.|.. ||-+ .++.. .-.+.+.|||+|.-..+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~g~~~~~~L~g~~~g~~~~ri~~~yRiiY~i~~~ 73 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDD 73 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTSSTTCCEECCGGGTTCEEEESSSSCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHh-CCCCCCCCCeeccCCCCCEEEEEECCCeEEEEEEECC
Confidence 5557889999988865 6754 23321 11245568899875444
No 2
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=50.99 E-value=15 Score=26.63 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC-----CCCCc------ccCCCceEEEEcccchhh
Q 030180 117 TSETRAEIVELITQLEAKNPTP-----APTEA------LTLLNAKWILVHIFFRFV 161 (181)
Q Consensus 117 s~~qR~~I~elI~qLEalNPtp-----~P~~a------~~lL~G~WrLlYTT~~el 161 (181)
....+.+|.++|..|+ .||-. .|+.. +-.++..|||+|+=..+.
T Consensus 32 dk~~~krI~~~I~~l~-~nP~~g~gK~e~Lkg~l~g~~s~RI~~~yRivy~i~d~~ 86 (96)
T 3oei_C 32 DRKTARRITRLIGEIQ-RDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAGDDE 86 (96)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTSSTTCCEECCGGGTTCEEEESSSSCEEEEEECSSE
T ss_pred CHHHHHHHHHHHHHHH-hCCCcCCCchhhcCCCCCCcEEEECCCCEEEEEEEECCE
Confidence 4678899999999987 47742 25542 112333477777755443
No 3
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=46.23 E-value=15 Score=24.44 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCCC-----CCCCc------ccCCCceEEEEcccchhh
Q 030180 122 AEIVELITQLEAKNPTP-----APTEA------LTLLNAKWILVHIFFRFV 161 (181)
Q Consensus 122 ~~I~elI~qLEalNPtp-----~P~~a------~~lL~G~WrLlYTT~~el 161 (181)
..|.++++.|...||-+ .|+.. .--++|+|+|+|.=..+.
T Consensus 25 ~~~~~~i~~l~~~~p~~~~~~~~~L~G~~~g~~~~ri~~dyrliY~i~~~~ 75 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDE 75 (88)
T ss_dssp HHHHHHHHHHTTSCCCCGGGCCEECSGGGTTSEECCSSTTCEEEEEEETTE
T ss_pred HHHHHHHHHHhcCCCCcccCCCCcccCCCCCeEEEEECCCEEEEEEEeCCE
Confidence 46888888886557753 24431 123578999999765443
No 4
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=46.01 E-value=29 Score=24.73 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC--CCCCcc------cCCCceEEEEcccchhhH
Q 030180 117 TSETRAEIVELITQLEAKNPTP--APTEAL------TLLNAKWILVHIFFRFVS 162 (181)
Q Consensus 117 s~~qR~~I~elI~qLEalNPtp--~P~~a~------~lL~G~WrLlYTT~~ell 162 (181)
...++.+|.+.+++|. .||.+ .++.+. -+=-|.||++|+=..+.+
T Consensus 19 d~~~~~ri~~~l~~l~-~nP~~~~k~L~g~~~~y~~RlRvg~YRiiy~i~d~~~ 71 (95)
T 4fxi_A 19 GSTVREQLKKKLVEVL-ESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKV 71 (95)
T ss_dssp CHHHHHHHHHHHHHHH-HSCCCGGGBCSSSTTEEEEECTTSCEEEEEEEEGGGT
T ss_pred CHHHHHHHHHHHHHHh-hCCCCcCccCcCCCCCCeEEEEeCCeEEEEEEECCEE
Confidence 5788999999999985 47754 344321 123577899998766654
No 5
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=42.47 E-value=33 Score=21.89 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHH--hcCCCC--CCCCcccCCC-------ceEEEEcccchh
Q 030180 117 TSETRAEIVELITQLE--AKNPTP--APTEALTLLN-------AKWILVHIFFRF 160 (181)
Q Consensus 117 s~~qR~~I~elI~qLE--alNPtp--~P~~a~~lL~-------G~WrLlYTT~~e 160 (181)
.+..+..|.+.|+.|. ..||.. .++... .+. |.|+++|.-..+
T Consensus 19 ~~~~~~~i~~~i~~l~~~~~~P~~~~~~l~g~-~~~~~~~~rv~~yriiY~i~~~ 72 (89)
T 2khe_A 19 DREVARRILRFLRERVATLEDPRSLGEPLRGP-ELGRFWKYRVGDYRLICHIQDR 72 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSSSSSEEECCCS-SCCSCEEEEETTEEEEEEEEGG
T ss_pred CHHHHHHHHHHHHHhhccccCCCccCccCcCC-CCCCeEEEEECCEEEEEEEECC
Confidence 3556777888888774 456654 233210 122 457788875444
No 6
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=37.78 E-value=14 Score=28.78 Aligned_cols=55 Identities=29% Similarity=0.352 Sum_probs=40.3
Q ss_pred EeecCCCCCCCcccccCCcccccccCCCcchHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHh
Q 030180 63 RAADDDEWGPEKEKEEGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEA 133 (181)
Q Consensus 63 ra~~~dewg~~~~~~~~~~~~~ae~~~~~~~~~~~~lK~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEa 133 (181)
+|+|=|-||.-.++ .++-+.|-.+|-..+..+++-...+++|++-|..++.-||-
T Consensus 25 Ka~dfDsWGQvvEA----------------~deY~~La~~lkk~~~s~~~~~~fte~qkk~i~KiatcL~l 79 (128)
T 1ug7_A 25 RGADFDSWGQLVEA----------------IDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLEL 79 (128)
T ss_dssp HHHHHHHHTCHHHH----------------HHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHH----------------HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 46777889875432 34466666777777788876666668899999999888885
No 7
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=36.63 E-value=18 Score=23.23 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC
Q 030180 117 TSETRAEIVELITQLEAKNPTP 138 (181)
Q Consensus 117 s~~qR~~I~elI~qLEalNPtp 138 (181)
.+..+.+|.+.++.|+. ||.+
T Consensus 19 ~~~~~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 19 PKAHYRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCC
T ss_pred CHHHHHHHHHHHHHHHh-CCCC
Confidence 35567789899988855 6754
No 8
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=33.39 E-value=59 Score=23.04 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 030180 93 VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTP 138 (181)
Q Consensus 93 ~~~~~~lK~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNPtp 138 (181)
.-.+.+||..|-. |||..+-...+-|++|.+.++..++.+
T Consensus 28 klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 28 DMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp TSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred HCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 4557888887754 889887777788888888888776544
No 9
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=26.46 E-value=63 Score=21.77 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCC-----CCCCc-c-----cCCCceEEEEcccchh
Q 030180 122 AEIVELITQLEAKNPTP-----APTEA-L-----TLLNAKWILVHIFFRF 160 (181)
Q Consensus 122 ~~I~elI~qLEalNPtp-----~P~~a-~-----~lL~G~WrLlYTT~~e 160 (181)
.+|.++|..|....|.+ .|+.. . =.++|+|+|+|.-..+
T Consensus 25 ~~i~~~i~~L~~~p~~~~~~~~~~L~g~~~g~~~~ri~~~yriiY~i~~~ 74 (98)
T 2otr_A 25 KLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIKKQ 74 (98)
T ss_dssp HHHHHHHHHHHHTCCSTTTTCCEECCSSCCSCEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHHhCCcccccCCCccccCCCCCeEEEEECCCEEEEEEEcCC
Confidence 57888888886542221 22321 0 0124778888876544
No 10
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=23.43 E-value=1.4e+02 Score=24.52 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCCCCC-------------CCCcccCCCceEEEEcccch
Q 030180 93 VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPA-------------PTEALTLLNAKWILVHIFFR 159 (181)
Q Consensus 93 ~~~~~~lK~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNPtp~-------------P~~a~~lL~G~WrLlYTT~~ 159 (181)
..+.+..|++||+.+..... ....++.+.+..++.+|+...++.+ |.. ...|.|...|..-..+
T Consensus 51 ~~~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~-n~~L~~gd~L~iP~r~ 127 (236)
T 3p42_A 51 KAKALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENS-NPPLVGDYTLYTVQRP 127 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGG-SCBCCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCC-CCccCCCCEEEECCCC
Confidence 45667788888888754331 2234677889999999999887652 222 2468888888766555
Q ss_pred hh
Q 030180 160 FV 161 (181)
Q Consensus 160 el 161 (181)
..
T Consensus 128 ~t 129 (236)
T 3p42_A 128 VT 129 (236)
T ss_dssp SE
T ss_pred CE
Confidence 44
No 11
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=22.83 E-value=80 Score=22.12 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCC--CCCCcc-----cCCCceEEEEcccchhh
Q 030180 117 TSETRAEIVELI-TQLEAKNPTP--APTEAL-----TLLNAKWILVHIFFRFV 161 (181)
Q Consensus 117 s~~qR~~I~elI-~qLEalNPtp--~P~~a~-----~lL~G~WrLlYTT~~el 161 (181)
....+.+|.++| +.|. .||.+ .|+... .+--|.||++|+=..+.
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~~gk~L~g~~~g~~r~Rig~yRiIY~i~~~~ 85 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLRVGKPLRRELAGTFSARRGTYRLLYRIDDEH 85 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTTSSEECCGGGTTCEEEECSSEEEEEEEETTT
T ss_pred CHHHHHHHHHHHHHHHH-hCcccCCeeccCCCceEEEEEeCCEEEEEEEeCCe
Confidence 567788999999 8885 67763 233210 11116788888765553
Done!