Query 030180
Match_columns 181
No_of_seqs 138 out of 258
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 15:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wmia1 d.298.1.2 (A:1-88) Hyp 33.5 8.9 0.00064 24.7 1.7 44 116-160 18-73 (88)
2 d1mu2a2 e.8.1.2 (A:3-429) HIV- 25.2 28 0.002 29.2 3.9 52 114-166 22-83 (427)
3 d2ov9a1 d.38.1.5 (A:7-209) Hyp 23.9 94 0.0068 22.8 6.5 45 93-137 21-65 (203)
4 d1imua_ d.204.1.1 (A:) Ribosom 19.8 68 0.0049 20.9 4.4 33 109-141 5-37 (107)
5 d1qpza1 a.35.1.5 (A:2-58) Puri 19.3 40 0.0029 20.7 2.8 18 115-132 26-43 (57)
6 d2ywqa1 d.204.1.1 (A:1-95) Rib 19.1 28 0.0021 22.3 2.1 30 109-138 6-35 (95)
7 d2hsga1 a.35.1.5 (A:2-58) Gluc 18.5 39 0.0029 20.7 2.6 18 115-132 27-44 (57)
8 d1t6sa1 a.4.5.60 (A:1-85) Segr 17.7 1.2E+02 0.0085 19.1 5.7 63 98-166 7-81 (85)
9 d1z8ma1 d.298.1.2 (A:1-88) Hyp 17.0 16 0.0011 24.2 0.4 45 121-166 24-80 (88)
10 d2gyc31 a.108.1.1 (3:2-48) Rib 15.9 54 0.0039 19.9 2.7 28 100-136 3-30 (47)
No 1
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.45 E-value=8.9 Score=24.75 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCccc------------CCCceEEEEcccchh
Q 030180 116 ATSETRAEIVELITQLEAKNPTPAPTEALT------------LLNAKWILVHIFFRF 160 (181)
Q Consensus 116 As~~qR~~I~elI~qLEalNPtp~P~~a~~------------lL~G~WrLlYTT~~e 160 (181)
.....+.+|.+.++.|+. ||.+.|..... +=-|+||++|+=..+
T Consensus 18 L~~~~~~~I~~~l~~L~~-~P~~~~~~~~~kL~G~~~~~~~rlRvG~YRiiy~i~~~ 73 (88)
T d1wmia1 18 LPKAHYRRFLEFRDILEY-EPVPREKFDVIKLEGTGDLDLYRARLGDYRVIYSVNWK 73 (88)
T ss_dssp SCHHHHHHHHHHHHHHTT-CSCCHHHHTCEEEECCSSEEEEEEECSSSEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHh-CcCcCCccccccccCCCCCCEEEEEeCCcEEEEEEECC
Confidence 467889999999988866 77655431111 114556777774444
No 2
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=25.25 E-value=28 Score=29.18 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC-----CCCCCCCcc----cCCC-ceEEEEcccchhhHHHhh
Q 030180 114 LNATSETRAEIVELITQLEAKN-----PTPAPTEAL----TLLN-AKWILVHIFFRFVSVVVK 166 (181)
Q Consensus 114 l~As~~qR~~I~elI~qLEalN-----Ptp~P~~a~----~lL~-G~WrLlYTT~~ell~L~~ 166 (181)
...+++++++|.+.|++|+..+ |...|-.++ .+=+ |+||++- ..+.+....+
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~v-DyR~LN~~t~ 83 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLI-DFRELNKVTQ 83 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEE-CTHHHHHHBC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEE-cCHHHHhhcc
Confidence 3468999999999999999986 333444422 2224 9999983 4456666554
No 3
>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=23.90 E-value=94 Score=22.82 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 030180 93 VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPT 137 (181)
Q Consensus 93 ~~~~~~lK~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNPt 137 (181)
.....+.-++|.+++..++-+-..-.+-.++|++++.+|+...+.
T Consensus 21 ~~r~~~a~R~l~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 65 (203)
T d2ov9a1 21 VDRATDAARRVVDALLRTDRGNANLERVAEELNSIAGHLEEHAPA 65 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhhccccC
Confidence 455666778999999999998888888899999999999987653
No 4
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=19.82 E-value=68 Score=20.87 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=27.7
Q ss_pred cCCcCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 030180 109 GTDRGLNATSETRAEIVELITQLEAKNPTPAPT 141 (181)
Q Consensus 109 gt~RGl~As~~qR~~I~elI~qLEalNPtp~P~ 141 (181)
=+.|++..|+.-++.|++-+..|+...+.+...
T Consensus 5 i~~r~~~lt~al~~~i~~kl~kl~k~~~~~~~~ 37 (107)
T d1imua_ 5 ITSKQMDITPAIREHLEERLAKLGKWQTQLISP 37 (107)
T ss_dssp ECCSSSCCCHHHHHHHHHHHHHHHTSSCCCSSC
T ss_pred EEEEcCcCCHHHHHHHHHHHHHHHhhCCCCceE
Confidence 367899999999999999999999987654333
No 5
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.27 E-value=40 Score=20.68 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 030180 115 NATSETRAEIVELITQLE 132 (181)
Q Consensus 115 ~As~~qR~~I~elI~qLE 132 (181)
.++++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999998874
No 6
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=19.11 E-value=28 Score=22.31 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=26.3
Q ss_pred cCCcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 030180 109 GTDRGLNATSETRAEIVELITQLEAKNPTP 138 (181)
Q Consensus 109 gt~RGl~As~~qR~~I~elI~qLEalNPtp 138 (181)
=+.|++..|+.-|+.|++-+..|+...+..
T Consensus 6 Itgr~~~lt~al~~~ve~kl~kL~k~~~~i 35 (95)
T d2ywqa1 6 LIGRNLEITDAIRDYVEKKLARLDRYQDGE 35 (95)
T ss_dssp EEEETSCCCHHHHHHHHHHHHGGGGSCSSC
T ss_pred EEEECCccCHHHHHHHHHHHHHHHHhCCCC
Confidence 357899999999999999999999987653
No 7
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=18.54 E-value=39 Score=20.67 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 030180 115 NATSETRAEIVELITQLE 132 (181)
Q Consensus 115 ~As~~qR~~I~elI~qLE 132 (181)
.++++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 479999999999999884
No 8
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=17.67 E-value=1.2e+02 Score=19.14 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCCcCCC-----------CCH-HHHHHHHHHHHHHHhcCCCCCCCCcccCCCceEEEEcccchhhHHHh
Q 030180 98 NLKKALVDSFYGTDRGLN-----------ATS-ETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVHIFFRFVSVVV 165 (181)
Q Consensus 98 ~lK~~LL~ai~gt~RGl~-----------As~-~qR~~I~elI~qLEalNPtp~P~~a~~lL~G~WrLlYTT~~ell~L~ 165 (181)
++++.+=.++...++++. .++ +-++.|+++....+..| .+.. .-.+.|.|+|. |.++.-.++
T Consensus 7 ~l~~~IEAlLFas~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~~~---~g~e-l~~~~~gy~~~--tk~e~~~~v 80 (85)
T d1t6sa1 7 QLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATG---RTFR-IHAIAGGYRFL--TEPEFADLV 80 (85)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHT---CSEE-EEEETTEEEEE--ECGGGHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCC---CcEE-EEEECCEEEEE--EhHHHHHHH
Confidence 444555555555556553 222 34566666666666554 3454 55689999986 444554444
Q ss_pred h
Q 030180 166 K 166 (181)
Q Consensus 166 ~ 166 (181)
+
T Consensus 81 ~ 81 (85)
T d1t6sa1 81 R 81 (85)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=17.03 E-value=16 Score=24.21 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccC------------CCceEEEEcccchhhHHHhh
Q 030180 121 RAEIVELITQLEAKNPTPAPTEALTL------------LNAKWILVHIFFRFVSVVVK 166 (181)
Q Consensus 121 R~~I~elI~qLEalNPtp~P~~a~~l------------L~G~WrLlYTT~~ell~L~~ 166 (181)
...+.+.|..|-..||-|.-.. ... +.|+|+|+|.-..+.+.|+.
T Consensus 24 ~~~~~~~i~~L~~~~pl~~~~~-dH~L~G~~~g~rechi~~D~llIy~~~~~~i~L~r 80 (88)
T d1z8ma1 24 DSVLNEVILTLRKKEPLDPQFQ-DHALKGKWKPFRECHIKPDVLLVYLVKDDELILLR 80 (88)
T ss_dssp HHHHHHHHHHHTTSCCCCGGGC-CEECSGGGTTSEECCSSTTCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcccc-CccccCcccCeeEEEEcCCEEEEEEEcCCEEEEEE
Confidence 3566677777766666543222 222 55678999987776655544
No 10
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=15.88 E-value=54 Score=19.92 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=20.5
Q ss_pred HHHHHHHhccCCcCCCCCHHHHHHHHHHHHHHHhcCC
Q 030180 100 KKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNP 136 (181)
Q Consensus 100 K~~LL~ai~gt~RGl~As~~qR~~I~elI~qLEalNP 136 (181)
|.++|++|+. -.--+|.+||..+|..-.
T Consensus 3 ke~Ileaia~---------MSVmdvveLi~amEEKFG 30 (47)
T d2gyc31 3 KDQIIEAVAA---------MSVMDVVELISAMEEKFG 30 (47)
T ss_dssp HHHHHHHHHH---------SCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH---------hhHHHHHHHHHHHHHHhC
Confidence 6778888763 335678899999997644
Done!