Query 030182
Match_columns 181
No_of_seqs 111 out of 152
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:48:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1560 Translation initiation 100.0 1.2E-57 2.7E-62 391.6 13.7 175 1-176 158-338 (339)
2 cd08065 MPN_eIF3h Mpr1p, Pad1p 100.0 3.2E-39 6.9E-44 277.2 14.3 128 1-128 139-266 (266)
3 cd08069 MPN_RPN11_CSN5 Mov34/M 96.8 0.0016 3.4E-08 56.6 4.4 40 7-47 162-201 (268)
4 cd08064 MPN_eIF3f Mpr1p, Pad1p 84.5 2.8 6.1E-05 36.1 6.0 67 20-95 138-204 (265)
5 PF14198 TnpV: Transposon-enco 78.2 2.8 6.2E-05 31.9 3.4 40 139-178 38-80 (111)
6 KOG4538 Predicted coiled-coil 59.1 65 0.0014 25.2 7.2 53 69-121 41-93 (130)
7 cd00225 API3 Ascaris pepsin in 53.1 81 0.0018 25.7 7.2 57 83-141 34-91 (159)
8 PF09454 Vps23_core: Vps23 cor 36.1 1.2E+02 0.0025 20.9 5.0 41 66-106 23-63 (65)
9 KOG3682 Predicted membrane pro 30.2 4E+02 0.0086 27.1 9.2 87 65-162 626-714 (930)
10 PF04239 DUF421: Protein of un 28.6 9.9 0.00021 28.1 -1.5 27 3-29 11-37 (99)
11 PF12196 hNIFK_binding: FHA Ki 26.8 39 0.00084 21.6 1.2 28 104-138 14-41 (41)
12 PF06324 Pigment_DH: Pigment-d 22.9 59 0.0013 17.3 1.2 10 34-43 1-10 (18)
13 PF05761 5_nucleotid: 5' nucle 20.8 3.8E+02 0.0082 25.2 7.0 72 71-157 344-415 (448)
14 KOG2150 CCR4-NOT transcription 20.1 3.6E+02 0.0077 26.4 6.7 87 32-126 77-175 (575)
No 1
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-57 Score=391.58 Aligned_cols=175 Identities=38% Similarity=0.610 Sum_probs=167.1
Q ss_pred CcccccCCCCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcC--CCCCCCCCCCcccCCCCChhHHHHHHHHHHhH
Q 030182 1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE--PDTPVTQRDYDRLQLSSSPFLERNMEFLIECM 78 (181)
Q Consensus 1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~--~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~v 78 (181)
|++|++++||+|.|+++||||+|||+||||+||||||+|++|++|+ .+.+...+.+..||||+...|+|+++.||++|
T Consensus 158 m~~~kekdwtpealk~~nltyenmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~v 237 (339)
T KOG1560|consen 158 MAAHKEKDWTPEALKSANLTYENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERV 237 (339)
T ss_pred HHHHhcCCCCHHHHHhcCCCHHHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999997 44445555689999999999999999999999
Q ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 030182 79 DDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158 (181)
Q Consensus 79 D~l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~ 158 (181)
|++++|++++++|||+++|||++++||++||++||+.|+++|+||||+|| |.|+||+|++|.|||++|+|+||+++|++
T Consensus 238 DEl~qe~~~l~kyqr~~~rqq~~~~q~~aKrqaENa~R~argep~lP~dd-~kr~fk~pq~p~rLdslLiS~qint~aq~ 316 (339)
T KOG1560|consen 238 DELHQEIVNLNKYQRQLARQQAKKHQWIAKRQAENANRAARGEPPLPEDD-WKRIFKPPQEPRRLDSLLISGQINTSAQQ 316 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChHH-HHHHhcCCCchhHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHHhh---hHHH-HHHHhhccC
Q 030182 159 INGKA---LGKG-VTQILQSES 176 (181)
Q Consensus 159 i~~f~---~~k~-~~~~lq~~~ 176 (181)
|..|| ++|+ +|+++|..+
T Consensus 317 ike~tSqnl~Klfiaea~~~~k 338 (339)
T KOG1560|consen 317 IKEFTSQNLSKLFIAEALQESK 338 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999 9999 999999764
No 2
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=100.00 E-value=3.2e-39 Score=277.20 Aligned_cols=128 Identities=58% Similarity=0.975 Sum_probs=122.8
Q ss_pred CcccccCCCCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCCCCCcccCCCCChhHHHHHHHHHHhHHH
Q 030182 1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDD 80 (181)
Q Consensus 1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~vD~ 80 (181)
|.+|++|+|+.++++++++++.+||+||||+|+||+|+++||++|.+..+...++|++|+|++.++||++|+.|+++||+
T Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~ 218 (266)
T cd08065 139 MELYKEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDE 218 (266)
T ss_pred HHHhhcCCcCHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999987766654699999999999999999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCC
Q 030182 81 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 128 (181)
Q Consensus 81 l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPeed 128 (181)
|++|++||++|||+++|||++++||++|||+||++|+++|++|||+||
T Consensus 219 l~~e~~~~~~y~r~~~~~~~~~~~~~~kr~~en~~r~~~~~~~lp~~~ 266 (266)
T cd08065 219 LSQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQREARGEEPLPEED 266 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999975
No 3
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=96.80 E-value=0.0016 Score=56.56 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=38.0
Q ss_pred CCCCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcCC
Q 030182 7 NNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEP 47 (181)
Q Consensus 7 ~~ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~~ 47 (181)
|.|+.++++ ..+++.++|.||||.|+||+|.+++|..|..
T Consensus 162 ~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~ 201 (268)
T cd08069 162 GHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWN 201 (268)
T ss_pred CccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHH
Confidence 789999999 9999999999999999999999999999854
No 4
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=84.47 E-value=2.8 Score=36.07 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=42.9
Q ss_pred CcccceeeecceeechHHHHHHHhhcCCCCCCCCCCCcccCCCCChhHHHHHHHHHHhHHHhHHHHhHHHHHHHHH
Q 030182 20 SWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL 95 (181)
Q Consensus 20 t~~~IfeEIPI~I~NS~Lv~~~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~l 95 (181)
++..+|+|||+.|+|+.-=.+-+.-+........ ....+..+++.+..++..|..-......|-+.+
T Consensus 138 ~~~~~F~~ip~~i~~~eaE~i~v~~l~~~~~~~~---------~~~~~~~~l~~~~~al~~L~~~l~~i~~Yl~~V 204 (265)
T cd08064 138 TLGSMFVPIPLELLYSEAERVALDLLAKTLASPS---------RSAPLTSDLEQLEASLEKLQEMLDRVLRYVEDV 204 (265)
T ss_pred CcceEEEEcceeeecCcHHHHHHHHHHhhccCCc---------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999877777766643322111 011233566666666666665555555666554
No 5
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=78.24 E-value=2.8 Score=31.95 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=33.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHhhccCCC
Q 030182 139 EPPRLESFLIANRIANYCNQINGKA---LGKGVTQILQSESIR 178 (181)
Q Consensus 139 ePSRL~slL~s~Qi~~yc~~i~~f~---~~k~~~~~lq~~~~~ 178 (181)
-|.+...|+++|....||.+|+.-| +..++.+.+.+.++.
T Consensus 38 ~p~~Y~~ll~~g~L~~~l~eid~~A~e~~e~l~~q~~~~~gvt 80 (111)
T PF14198_consen 38 KPILYNNLLLSGKLNEHLAEIDEQAQERFERLVEQMAEKEGVT 80 (111)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4778999999999999999999998 555577777777764
No 6
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=59.13 E-value=65 Score=25.20 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCC
Q 030182 69 RNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGE 121 (181)
Q Consensus 69 k~l~~l~~~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge 121 (181)
+.+..--+-=-++.+|---.-.+++.+.-.+-+-.+-...|+.||+.|+..+|
T Consensus 41 k~lr~sw~kKm~lr~e~~~vK~~~~~i~ek~~~~rqeKkqRrvEn~kRRLeNE 93 (130)
T KOG4538|consen 41 KTLRSSWDKKMELRAEKDMVKRVQDNIREKQVQERQEKKQRRVENEKRRLENE 93 (130)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444566666656666777665555555566678888888887765
No 7
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=53.12 E-value=81 Score=25.72 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCC-CCCCCCCCCCCCCCCCCCCc
Q 030182 83 VEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGE-EPLPEEDPSNPIFKPIPEPP 141 (181)
Q Consensus 83 ~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge-~pLPeed~~~~~fK~~~ePS 141 (181)
.||.-|+.|+.+++.-+....+-+..|+.-=..|+ .|+ ..+..-. ..++=|+|..||
T Consensus 34 ~Eq~el~~y~~d~~~yK~~~k~~l~er~~~~~~~~-~~~~~~~~~~~-~~~~Pk~PkkPs 91 (159)
T cd00225 34 DEQQELAQYVEDVADYKEEVKQALKERQEGLKLRR-AGKKKKAVTLA-EEKLPKAPKKPS 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hcccccccccc-cccCCCCCCCCC
Confidence 45778888988888887777766666554333333 343 1121111 112447777776
No 8
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.13 E-value=1.2e+02 Score=20.93 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhHHHhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030182 66 FLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWL 106 (181)
Q Consensus 66 ~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~ 106 (181)
-++..+..|-.++..=+-.-..|-+.-|.++|+|--.-..+
T Consensus 23 AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral~ 63 (65)
T PF09454_consen 23 AIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRALI 63 (65)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777776666677888999999999987554443
No 9
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=30.19 E-value=4e+02 Score=27.14 Aligned_cols=87 Identities=20% Similarity=0.331 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcC--CCCCCCCCCCCCCCCCCCCCch
Q 030182 65 PFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG--EEPLPEEDPSNPIFKPIPEPPR 142 (181)
Q Consensus 65 ~~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~g--e~pLPeed~~~~~fK~~~ePSR 142 (181)
.-+|+||+++.+|=++++--++-.-..-+.+.+-- ...-+.-||.-|=.|.=-. +-..|-- -.+-.|
T Consensus 626 ~~~eq~L~f~vecRe~f~~~~~~li~LI~S~n~la--~~t~K~gkK~a~Fvr~Cia~~~~TIPSv---------~~p~~r 694 (930)
T KOG3682|consen 626 TNLEQCLEFIVECREDFGLRQNSLIHLIESLNQLA--HRTQKSGKKKADFVRVCIANLSLTIPSV---------RDPSRR 694 (930)
T ss_pred ccHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHhheecccc---------cChhhH
Confidence 45999999999999999888877777766665221 1111222333344443221 2222221 013346
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 030182 143 LESFLIANRIANYCNQINGK 162 (181)
Q Consensus 143 L~slL~s~Qi~~yc~~i~~f 162 (181)
|+-+|.++||.-.+.-|++.
T Consensus 695 lnlyl~~~qvaLl~~~lsq~ 714 (930)
T KOG3682|consen 695 LNLYLQNIQVALLANFLSQM 714 (930)
T ss_pred hhhhhHHhHHHHHhChhhhH
Confidence 99999999998877666554
No 10
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=28.58 E-value=9.9 Score=28.10 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=21.3
Q ss_pred ccccCCCCHHHHhhCCCCcccceeeec
Q 030182 3 LYRSNNFTGEKLREKNLSWVDIFEEIP 29 (181)
Q Consensus 3 ~yk~~~ft~e~l~~~~Lt~~~IfeEIP 29 (181)
++++|+|..++|+++++|.++++..+=
T Consensus 11 Li~dG~i~~~~l~~~~it~~dl~~~LR 37 (99)
T PF04239_consen 11 LIRDGKIDEDNLRRARITEEDLLSALR 37 (99)
T ss_dssp EEETTEE-HHHHHHTT--HHHHHHHHH
T ss_pred EEECCEECHHHHhHcCCCHHHHHHHHH
Confidence 678999999999999999999987764
No 11
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=26.80 E-value=39 Score=21.61 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=14.2
Q ss_pred HHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCC
Q 030182 104 SWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIP 138 (181)
Q Consensus 104 ~~~~KRk~EN~~R~~~ge~pLPeed~~~~~fK~~~ 138 (181)
.+++|||-|-+.---. .++|++ +||.|+
T Consensus 14 tfLErRKS~~~emndD-----d~D~EI--v~K~P~ 41 (41)
T PF12196_consen 14 TFLERRKSEVAEMNDD-----DEDDEI--VFKQPV 41 (41)
T ss_dssp HHHHHHHHHHHH--GG-----GGS-SE--EESS--
T ss_pred HHHHHhhhhhhcccCC-----CcCCee--EeccCC
Confidence 4788898876653111 123444 788763
No 12
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=22.90 E-value=59 Score=17.28 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=7.9
Q ss_pred chHHHHHHHh
Q 030182 34 NSALISAFMT 43 (181)
Q Consensus 34 NS~Lv~~~L~ 43 (181)
||.|+|++|.
T Consensus 1 NselINslLg 10 (18)
T PF06324_consen 1 NSELINSLLG 10 (18)
T ss_pred ChHHHHHHHc
Confidence 7888888774
No 13
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=20.79 E-value=3.8e+02 Score=25.19 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHHhHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCchhHHHHHHH
Q 030182 71 MEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIAN 150 (181)
Q Consensus 71 l~~l~~~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPeed~~~~~fK~~~ePSRL~slL~s~ 150 (181)
|..|...++++. +.--..+..++.++.+.+|.+.|+.- |...++.- . ..|..+||.-..||+. +.
T Consensus 344 l~~L~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f-n--~~~GslfRtg~~~s~F-----a~ 408 (448)
T PF05761_consen 344 LQELEELLEELQ----DHLDQLRSSSELRPDISELRKERREL---RREMKELF-N--PQFGSLFRTGHNPSYF-----AR 408 (448)
T ss_dssp HHHHHHHCHHHH----CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCTT----TTT-BSSEETTEEBHH-----HH
T ss_pred HHHHHHHHHHHH----HHhcccccchhhHHHHHHHHHHHHHH---HHHHhhhc-c--cchHHHHhcCCCccHH-----HH
Confidence 444444444443 33223347888888999999888642 22332211 1 1277899999999985 45
Q ss_pred HHHHHHH
Q 030182 151 RIANYCN 157 (181)
Q Consensus 151 Qi~~yc~ 157 (181)
||..||+
T Consensus 409 qv~RyAd 415 (448)
T PF05761_consen 409 QVERYAD 415 (448)
T ss_dssp HHHHH-S
T ss_pred HHHHHhh
Confidence 5555543
No 14
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.14 E-value=3.6e+02 Score=26.45 Aligned_cols=87 Identities=22% Similarity=0.370 Sum_probs=53.6
Q ss_pred eechHHHHHHHhhcC---CCCCCCCCCCcccCCCCChhH-------HHHHHHHHHhHHHhHHHHhHHHH--HHHHHHHHH
Q 030182 32 VSNSALISAFMTELE---PDTPVTQRDYDRLQLSSSPFL-------ERNMEFLIECMDDLSVEQQKFQF--YYRSLTRQQ 99 (181)
Q Consensus 32 I~NS~Lv~~~L~eL~---~~~~~~~~~~d~L~ls~~~~L-------ek~l~~l~~~vD~l~~Eq~k~~~--yqR~l~rqq 99 (181)
+.|--||..-|-... .... +--|+..-|+...-| ...++-|..+||+|+.+...|.- |.|...|.
T Consensus 77 ~d~RrlIE~~MErfK~vEke~K--tKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh- 153 (575)
T KOG2150|consen 77 LDNRRLIEQRMERFKAVEKEMK--TKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERH- 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--ccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345556666666551 0000 113555555555433 25678888888888877766655 44444443
Q ss_pred HHHHHHHHHHHHhhHHHHHcCCCCCCC
Q 030182 100 AQQQSWLQKRRDENKARKAAGEEPLPE 126 (181)
Q Consensus 100 ~~~~~~~~KRk~EN~~R~~~ge~pLPe 126 (181)
.|. +++.|+.-|....++..|+
T Consensus 154 ----~~H-~~~lEliLr~L~N~E~~pe 175 (575)
T KOG2150|consen 154 ----RWH-QQKLELILRLLDNDELDPE 175 (575)
T ss_pred ----HHH-HHHHHHHHHHhhccccCHH
Confidence 454 5788999999999888776
Done!