Query 030182
Match_columns 181
No_of_seqs 111 out of 152
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 89.9 0.55 1.9E-05 40.2 6.1 126 9-164 180-305 (306)
2 4b4t_U RPN8, 26S proteasome re 56.9 2.3 7.7E-05 36.7 0.0 58 67-127 274-331 (338)
3 1f32_A Major pepsin inhibitor 49.8 14 0.00049 28.5 3.5 34 82-115 98-131 (149)
4 2f6m_A Suppressor protein STP2 30.4 88 0.003 20.8 4.6 42 67-108 18-59 (65)
5 3ogl_Q JAZ1 incomplete degron 20.6 60 0.0021 17.2 1.8 12 100-111 8-19 (21)
6 3iot_A Maltose-binding protein 18.2 93 0.0032 26.3 3.6 35 77-112 360-394 (449)
7 3ogk_Q JAZ1 incomplete degron 17.7 70 0.0024 17.1 1.7 12 100-111 3-14 (22)
8 3swf_A CGMP-gated cation chann 17.7 2.5E+02 0.0085 19.2 6.4 38 66-106 4-41 (74)
9 1sse_A AP-1 like transcription 17.1 17 0.00058 21.6 -1.0 15 151-165 20-34 (35)
10 3c6f_A YETF protein; uncharact 16.1 20 0.00069 27.5 -1.1 26 3-28 19-44 (153)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.92 E-value=0.55 Score=40.20 Aligned_cols=126 Identities=10% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCHHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCCCCCcccCCCCChhHHHHHHHHHHhHHHhHHHHhHH
Q 030182 9 FTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKF 88 (181)
Q Consensus 9 ft~e~l~~~~Lt~~~IfeEIPI~I~NS~Lv~~~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~l~~l~~~vD~l~~Eq~k~ 88 (181)
+....+...+..+...|.++||.++.|.|-..+|..|...... .. |+..++ .++++...+++.++.. ..
T Consensus 180 ~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~-----~~--l~~~~~-~~~~~~~~~~i~~m~~---~~ 248 (306)
T 4b4t_V 180 LNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ-----SG--LKMYDY-EEKEESNLAATKSMVK---IA 248 (306)
T ss_dssp ----------------CEEECSCCCCCSSCTHHHHHHHHC-----------------C-HHHHHHHHHHHHHHSS---CH
T ss_pred cCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc-----cc--cccCcH-HHHHHHHHHHHHHHHH---HH
Confidence 3444555566677789999999999999999999888543211 11 223332 3444544555555432 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 030182 89 QFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGKAL 164 (181)
Q Consensus 89 ~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~i~~f~~ 164 (181)
..|.+.+..++..-..++. .+. .+.-|+. + .-....+.|+.++-++.+|-.|+.++|
T Consensus 249 ~~y~k~v~~e~~~~~~~l~--------~~~-----vgk~dp~-~-----~l~~~~~~l~~~ni~~~l~~~~~~~~~ 305 (306)
T 4b4t_V 249 EQYSKRIEEEKELTEEELK--------TRY-----VGRQDPK-K-----HLSETADETLENNIVSVLTAGVNSVAI 305 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTC-----SCSSCCS-S-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCHHHHH--------hhc-----cCccChH-H-----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3466665554433222221 001 1111210 0 012445889999999999999998764
No 2
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.86 E-value=2.3 Score=36.72 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCC
Q 030182 67 LERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEE 127 (181)
Q Consensus 67 Lek~l~~l~~~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~R~~~ge~pLPee 127 (181)
|--+|-.|+.++-+|+.-.+|..+++|. ++.+...|..|++.+++.+...+++..|..
T Consensus 274 mv~YLs~L~rs~~al~eli~nk~~~~~~---~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 331 (338)
T 4b4t_U 274 MVIYISNLVRSIIAFDDLIENKIQNKKI---QEQRVKDKQSKVSDDSESESGDKEATAPLI 331 (338)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhcccccccccccccccccCCcc
Confidence 4466777889999999888888766555 666778899999999999988888766643
No 3
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=49.85 E-value=14 Score=28.55 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=14.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 030182 82 SVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKA 115 (181)
Q Consensus 82 ~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~EN~~ 115 (181)
..|+..+..|...++--+.+.+.|..+|.-++.+
T Consensus 98 ~~Eq~EL~~y~~k~~a~eer~e~~~~~~~~~k~~ 131 (149)
T 1f32_A 98 AKDHAEVQTFREKIAAFEEQQENQPPSSGMPHGA 131 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCCC
Confidence 4677888888888775555566666666554444
No 4
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=30.44 E-value=88 Score=20.85 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 030182 67 LERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQK 108 (181)
Q Consensus 67 Lek~l~~l~~~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~~K 108 (181)
+|..+..|-++++.=.-+..-|-+.-|.++|+|--+...++|
T Consensus 18 ieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~K 59 (65)
T 2f6m_A 18 LTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQR 59 (65)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666676776666666778999999999998776655554
No 5
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=20.59 E-value=60 Score=17.15 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q 030182 100 AQQQSWLQKRRD 111 (181)
Q Consensus 100 ~~~~~~~~KRk~ 111 (181)
+-.++|++|||.
T Consensus 8 ~SLqRFleKRk~ 19 (21)
T 3ogl_Q 8 ASLHRFLEKRKD 19 (26)
T ss_pred HHHHHHHHHhhc
Confidence 457789999984
No 6
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=18.22 E-value=93 Score=26.32 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=12.2
Q ss_pred hHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030182 77 CMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDE 112 (181)
Q Consensus 77 ~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~~KRk~E 112 (181)
.++++..+......+. .+.++|+..+||+++..+.
T Consensus 360 al~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~ 394 (449)
T 3iot_A 360 ALAAAQTNAAAMATLE-KLMKAFESLKSFQQQQQQQ 394 (449)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHhhccccccc
Confidence 3444444444433332 2344444455554444333
No 7
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=17.73 E-value=70 Score=17.06 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q 030182 100 AQQQSWLQKRRD 111 (181)
Q Consensus 100 ~~~~~~~~KRk~ 111 (181)
+-+++|++|||.
T Consensus 3 ~SLqRFleKRk~ 14 (22)
T 3ogk_Q 3 ASLHRFLEKRKD 14 (26)
T ss_pred hhHHHHHHHHHH
Confidence 346789999985
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=17.69 E-value=2.5e+02 Score=19.16 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhHHHhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030182 66 FLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWL 106 (181)
Q Consensus 66 ~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~l~rqq~~~~~~~ 106 (181)
-+|.-++.|-.++|.| |.||.+..-.+.--|++++|=+
T Consensus 4 dlEEKv~~LE~sld~L---QTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 4 GLEEKVTRMESSVDLL---QTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888889988 6788877777777777665443
No 9
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=17.06 E-value=17 Score=21.60 Aligned_cols=15 Identities=13% Similarity=0.538 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhH
Q 030182 151 RIANYCNQINGKALG 165 (181)
Q Consensus 151 Qi~~yc~~i~~f~~~ 165 (181)
||+.+|..+++.|..
T Consensus 20 qV~~FC~kln~aCGT 34 (35)
T 1sse_A 20 QVSEFCSKMNQVCGT 34 (35)
T ss_dssp SSSHHHHHHHHTTSC
T ss_pred HhhHHHHHHHHHhcC
Confidence 677788888887743
No 10
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=16.10 E-value=20 Score=27.52 Aligned_cols=26 Identities=4% Similarity=0.187 Sum_probs=22.9
Q ss_pred ccccCCCCHHHHhhCCCCcccceeee
Q 030182 3 LYRSNNFTGEKLREKNLSWVDIFEEI 28 (181)
Q Consensus 3 ~yk~~~ft~e~l~~~~Lt~~~IfeEI 28 (181)
+.++|++..+++++.++|..+++..+
T Consensus 19 LI~~G~i~~~~l~k~rit~~dL~~~L 44 (153)
T 3c6f_A 19 VIRKGELQYKVMKKNKIDINQLQSML 44 (153)
T ss_dssp EEETTEECHHHHHHTTCCHHHHHHHH
T ss_pred EEECCEEcHHHHhHcCCCHHHHHHHH
Confidence 56899999999999999999987665
Done!