RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 030185
(181 letters)
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 116 bits (291), Expect = 3e-32
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 19/179 (10%)
Query: 9 ESDDRRLKTKYNNAIN-----VIQRTLALYS--IEEVAFSFNGGKDSTVLLHLLRAGYFL 61
++ + + AIN +I T +S E++FS+NGGKD VLL L + +
Sbjct: 25 AAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWE 84
Query: 62 HKGEQSCSNGSLTF-------PIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD-- 112
+ + + + T++ + + F + +F +T+ +Y L L D
Sbjct: 85 YYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKC 144
Query: 113 --FKSGLEALLNAKP-IRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYR 168
E L P +AI +G+R DP + + WP F R+ P+L W+
Sbjct: 145 ETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLA 203
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 112 bits (281), Expect = 9e-31
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 20 NNAINVIQRTLALYS--IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTF-- 75
++ +S E++FS+NGGKD VLL L + + + ++ ++
Sbjct: 36 LTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQ 95
Query: 76 -----PIRTIYFESNSAFPEINSFTYDTASKYVLQL------DIIRSDFKSGLEALLNAK 124
+ T++ + FP + +F +T+ +Y L L + +
Sbjct: 96 SFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIY 155
Query: 125 P-IRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYR 168
P AI +G+R DP + + WP FMR+ P+L W
Sbjct: 156 PETEAIVIGIRHTDPFGEALKPIQRTDSNWPDFMRLQPLLHWDLT 200
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 46.3 bits (109), Expect = 1e-06
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLT 74
LK +I++I+ A + + ++ GKDS V+LHL R ++ G L
Sbjct: 28 LKQLEAESIHIIREVAAEF--DNPVMLYSIGKDSAVMLHLAR---------KAFFPGKLP 76
Query: 75 FPIRTIYFESNSAFPEINSFTYDTASKY 102
FP+ ++ ++ F E+ F +
Sbjct: 77 FPV--MHVDTRWKFQEMYRFRDQMVEEM 102
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 35.9 bits (83), Expect = 0.003
Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 57/188 (30%)
Query: 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGS 72
L+ +A + L E S + G + V LHL+
Sbjct: 26 AELEKL--DAEGRVAWALDNLP-GEYVLSSSFGIQAAVSLHLVN---------------Q 67
Query: 73 LTFPIRTIYFESNSAFPEINSFTYDT----ASKYVLQLDIIRSDFKS------------- 115
+ I I ++ FPE TY K L L + R+ +
Sbjct: 68 IRPDIPVILTDTGYLFPE----TYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQ 123
Query: 116 ---------------GLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVN 160
+ L + F G+R + G +V
Sbjct: 124 GVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRG---VFKVL 180
Query: 161 PILDWSYR 168
PI+DW R
Sbjct: 181 PIIDWDNR 188
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 36.2 bits (83), Expect = 0.003
Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 60/190 (31%)
Query: 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGS 72
L K + ++++ + +E+ SF+G +D VL+ +
Sbjct: 35 SSLADK--SPQDILKAAFEHFG-DELWISFSGAEDV-VLVDMAW---------------K 75
Query: 73 LTFPIRTIYFESNSAFPEINSFTYDT----ASKYVLQLDIIRSDFKSGLEALLNAKPIRA 128
L ++ ++ PE TY Y + +D++ D LE L+ K + +
Sbjct: 76 LNRNVKVFSLDTGRLHPE----TYRFIDQVREHYGIAIDVLSPD-PRLLEPLVKEKGLFS 130
Query: 129 I---------------------------FLGVRIGDPTAVGQ-----EQFSPSSPGWPPF 156
G R E S P
Sbjct: 131 FYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPL 190
Query: 157 MRVNPILDWS 166
+ NP+ +
Sbjct: 191 YKFNPLSSMT 200
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 35.7 bits (82), Expect = 0.005
Identities = 19/183 (10%), Positives = 48/183 (26%), Gaps = 55/183 (30%)
Query: 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIY 81
+I ++ + + + G V + +L S + ++
Sbjct: 30 PQEIIAWSIVTF--PHLFQTTAFGLTGLVTIDMLS----------KLSEKYYMPEL--LF 75
Query: 82 FESNSAFPEINSFTYDTASK--------YVLQLDIIRSDFK------------------- 114
++ FP+ T ++ + + + D
Sbjct: 76 IDTLHHFPQ----TLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDD 131
Query: 115 ---------SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDW 165
I A+F G R +A Q +++NP+++W
Sbjct: 132 DKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDE-LNGILKINPLINW 190
Query: 166 SYR 168
++
Sbjct: 191 TFE 193
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 35.1 bits (81), Expect = 0.008
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLRA 57
VAFS GG DSTVLLH L
Sbjct: 18 VAFS--GGLDSTVLLHQLVQ 35
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 35.0 bits (81), Expect = 0.008
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 38 VAFSFNGGKDSTVLLHLLRA 57
V S GG DS LLH+ +
Sbjct: 23 VGVS--GGPDSLALLHVFLS 40
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A
{Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB:
2e21_A* 2e89_A*
Length = 317
Score = 34.5 bits (80), Expect = 0.012
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 38 VAFSFNGGKDSTVLLHLL 55
+AFS GG DS VL +L
Sbjct: 29 IAFS--GGVDSVVLTDVL 44
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 33.2 bits (76), Expect = 0.026
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 38 VAFSFNGGKDSTVLLHLL-RAGY 59
V FS GGKDS++ +L + GY
Sbjct: 11 VLFS--GGKDSSLSAVILKKLGY 31
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 33.1 bits (76), Expect = 0.031
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 26/104 (25%)
Query: 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGS 72
L+ +A + L E S + G + V LHL+
Sbjct: 25 AELEKL--DAEGRVAWALDNLP-GEYVLSSSFGIQAAVSLHLVN---------------Q 66
Query: 73 LTFPIRTIYFESNSAFPEINSFTYD----TASKYVLQLDIIRSD 112
+ I I ++ FPE TY K L L + R+
Sbjct: 67 IRPDIPVILTDTGYLFPE----TYRFIDELTDKLKLNLKVYRAT 106
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus}
PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Length = 237
Score = 29.7 bits (66), Expect = 0.48
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 38 VAFSFNGGKDSTV-LLHLLRAGY 59
VA ++GGKDS L ++ +
Sbjct: 7 VAVLYSGGKDSNYALYWAIKNRF 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.88
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 40/138 (28%)
Query: 2 EIDKAIRESDDRRLKTKYNNAINVIQRTLALYSI-----EEVAFSFNGGKDSTVLLHLLR 56
EID I D + TL L+ EE+ F +LR
Sbjct: 50 EIDHIIMSKDA-------------VSGTLRLFWTLLSKQEEMVQKFVEE--------VLR 88
Query: 57 AGY-FLHKGEQSCSNGSLTFPIRTIYFES-NSAFPEINSFTYDTASKYVLQLDIIRSDFK 114
Y FL ++ + +Y E + + + F +KY ++ R
Sbjct: 89 INYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVF-----AKY----NVSRLQPY 137
Query: 115 SGL-EALLNAKPIRAIFL 131
L +ALL +P + + +
Sbjct: 138 LKLRQALLELRPAKNVLI 155
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 28.9 bits (64), Expect = 1.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 96 YDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIF 130
T KY L I+ F L+ L + I IF
Sbjct: 206 QQTEEKYTDTLGSIQQHFLKPLQRFLKPQDIEIIF 240
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.3
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 21 NAINVIQRTLALYSIEEV-AFSFNGGKDSTV 50
A+ +Q +L LY+ + A + +T+
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK----ATM 46
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 27.3 bits (61), Expect = 3.1
Identities = 8/44 (18%), Positives = 11/44 (25%), Gaps = 11/44 (25%)
Query: 37 EVAFSFNGGK--------DSTVLLHLLRAGYFLHKGEQSCSNGS 72
+VA F G T+ R + C G
Sbjct: 5 QVALQFEDGVTRFICIAQGETLSDAAYRQQINI---PMDCREGE 45
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical
protein, structural genomics, JOIN for structural
genomics; 2.40A {Pectobacterium atrosepticum SCRI1043}
SCOP: c.26.2.1
Length = 232
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 38 VAFSFNGGKDSTVLLHLLRAGYF 60
V FS GG+DST L Y
Sbjct: 7 VVFS--GGQDSTTCLIQALQDYD 27
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 27.1 bits (60), Expect = 3.6
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 96 YDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIF 130
T KY L I+ F L+ L + + IF
Sbjct: 34 QQTEEKYTDTLGSIQQHFMKPLQRFLKPQDMETIF 68
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA
modification, tRNA, hydrolase; 2.95A {Bacillus
subtilis}
Length = 219
Score = 26.5 bits (59), Expect = 4.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 38 VAFSFNGGKDSTVLLHLLRAGYF 60
V FS GG+DST L +
Sbjct: 8 VVFS--GGQDSTTCLLWALKEFE 28
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A
{Homo sapiens}
Length = 90
Score = 24.8 bits (54), Expect = 8.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 141 VGQEQFSPSSPGWPPFMRVNPI--LDWSYRLLINNKLF 176
VG+E F + + ++ I + Y L IN K
Sbjct: 49 VGKETFYVGAAKTKATINIDAISGFAYEYTLEINGKSL 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,770,000
Number of extensions: 156123
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 25
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)