Citrus Sinensis ID: 030186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR
Secondary Structure (PSIPRED)
cEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHcccccEEccEEEEEEEccEEEcccEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccccEEEEEcccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEcccEEEEEEcc
Coil and Loop (DISEMBL)
MVVLSLQvvrfptppyqislrrqstdkitrcgiaepsgepaplgqktkyndgFFEKAFMTLFARKMEkfaspaksktetkkkrwfdfgydyesFVDVSKRVMEGRSRQQQQEVVREVLLsmlppgapaqfrklfpptkwaAEFNaaltvpffhwlvgpsevVEVEIngekqrsgvhikkcr
Flexible Loop (DISEMBL)
mvvlslqvvrfptppyqislrrqstdKITRCGIaepsgepaplgqkTKYNDGFFEKAFMTLFARKMEkfaspaksktetkkkrwfdfgYDYESFVDVSKRVMEGRSRQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEingekqrsgvhikkcr
Low Complexity Region (SEG)
MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGrsrqqqqevvrevllsMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR
Disordered region (IsUnstruct)
***LSLQVVRFPTPPYQI*****************************KYNDGFFEKAFMTLFARK****************KRWFDFGYDYESFVDVSK**************VREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEI***************
Disordered Region (DISOPRED)
***LS**V****************************************YNDGFFEKAFMTLFARKM*******************DFGYDYESFVDVSKRV***********VVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR
Disordered Region (DISEMBL)
MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKF**********KKKRWFDFGYDYESFVDVSKRV*********QEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEK***********
Disordered Region (DISPRO)
MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPA**********WFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
449495159	263	PREDICTED: uncharacterized LOC101210861	0.994	0.684	0.745	2e-70
449456933	263	PREDICTED: uncharacterized protein LOC10	0.994	0.684	0.740	4e-69
255555763	277	conserved hypothetical protein [Ricinus	0.988	0.646	0.723	4e-69
225426574	266	PREDICTED: uncharacterized protein LOC10	0.988	0.672	0.756	4e-67
224057988	237	predicted protein [Populus trichocarpa]	0.828	0.632	0.855	1e-66
356499600	270	PREDICTED: uncharacterized protein LOC10	0.988	0.662	0.740	4e-66
357462337	266	hypothetical protein MTR_3g080840 [Medic	0.983	0.669	0.747	4e-66
356547509	266	PREDICTED: uncharacterized protein LOC10	0.988	0.672	0.751	7e-66
388491274	266	unknown [Medicago truncatula]	0.983	0.669	0.741	2e-65
297839973	250	hypothetical protein ARALYDRAFT_474875 [	0.906	0.656	0.703	3e-61

>gi|449495159|ref|XP_004159751.1| PREDICTED: uncharacterized LOC101210861 [Cucumis sativus]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 150/181 (82%), Gaps = 1/181 (0%)

Query: 1   MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMT 60
           MVVL LQ ++F T P +    R+   +  RCGIAE SGEPAPLGQKTKYNDG FEK FMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120
           LFARKMEKFA+ AK + + K+  W+DF YDYE FVDVSKRVM+G++R QQQ VVREVLLS
Sbjct: 61  LFARKMEKFAN-AKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKNRMQQQIVVREVLLS 119

Query: 121 MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKC 180
           MLPPGAPAQFRKLFPPTKWA EFNA +TVPFF WLVGPSEVVEVE+NG KQRSGVHIKKC
Sbjct: 120 MLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 179

Query: 181 R 181
           R
Sbjct: 180 R 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456933|ref|XP_004146203.1| PREDICTED: uncharacterized protein LOC101210861 [Cucumis sativus]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 134/181 (74%), Positives = 149/181 (82%), Gaps = 1/181 (0%)

Query: 1   MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMT 60
           MVVL LQ ++F T P +    R+   +  RCGIAE SGEPAPLGQKTKYNDG FEK FMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120
           LFARKMEKFA+ AK + + K+  W+DF YDYE FVDVSKRVM+G++R QQQ VVREVLLS
Sbjct: 61  LFARKMEKFAN-AKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLS 119

Query: 121 MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKC 180
           MLPPGAPAQFRKLFPPTKWA EFNA +TVPFF WLVGPSEVVEVE+NG KQRSGVHIKK 
Sbjct: 120 MLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKL 179

Query: 181 R 181
           R
Sbjct: 180 R 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555763|ref|XP_002518917.1| conserved hypothetical protein [Ricinus communis] gi|223541904|gb|EEF43450.1| conserved hypothetical protein [Ricinus communis]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 147/181 (81%), Gaps = 2/181 (1%)

Query: 1   MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMT 60
           MV L+LQ   F  P     L+R S     RC IAEPSGEPAPLGQKTKY DG FEK FM+
Sbjct: 1   MVALNLQAFHFRAPRRGPCLQRCSPRIFIRCRIAEPSGEPAPLGQKTKYTDGLFEKVFMS 60

Query: 61  LFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120
           LFARKMEKFA+P K+  ++KKK W D   DYE+FVDVS+RVM+GR+R QQQEVVREVLLS
Sbjct: 61  LFARKMEKFAAPVKNGNDSKKKGWLD--SDYETFVDVSRRVMQGRNRLQQQEVVREVLLS 118

Query: 121 MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKC 180
           MLPPGAP QF+KLFPPT+WAAEFNAALTVPFF WLVGPSEV+EVE+NG KQ+SGV IKKC
Sbjct: 119 MLPPGAPEQFKKLFPPTRWAAEFNAALTVPFFQWLVGPSEVIEVEVNGVKQKSGVRIKKC 178

Query: 181 R 181
           R
Sbjct: 179 R 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426574|ref|XP_002279815.1| PREDICTED: uncharacterized protein LOC100256431 [Vitis vinifera]

 Score =  259 bits (661), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/185 (75%), Positives = 153/185 (82%), Gaps = 6/185 (3%)

Query: 1   MVVLSLQVVRFPTPPYQISLRRQSTD---KITRCGIAEPSGEPAPLGQKTKYNDGFFEKA 57
           M VLS Q V+FP   ++   RR+S+     I RCGIAEPSGEPAP GQKT+YNDGFFEK 
Sbjct: 1   MSVLSFQAVQFPALDHRSLPRRRSSTGYINIVRCGIAEPSGEPAPFGQKTRYNDGFFEKV 60

Query: 58  FMTLFARKMEKFASPAKSKTETKKKR-WFDFGYDYESFVDVSKRVMEGRSRQQQQEVVRE 116
           FMTLFARKM +FA+PAKS  E +KKR W+D   DYE FVDVSKRVM+GRSR QQQEVVRE
Sbjct: 61  FMTLFARKMGRFAAPAKSGIEAEKKRSWWD--CDYERFVDVSKRVMQGRSRMQQQEVVRE 118

Query: 117 VLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVH 176
           VLLSMLPPGAP QFRKLFPPT+WAAEFNAA TVPFF WLVGPSEVVEVE+NG KQRSGV 
Sbjct: 119 VLLSMLPPGAPDQFRKLFPPTRWAAEFNAAFTVPFFAWLVGPSEVVEVEVNGVKQRSGVL 178

Query: 177 IKKCR 181
           IKKCR
Sbjct: 179 IKKCR 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057988|ref|XP_002299424.1| predicted protein [Populus trichocarpa] gi|222846682|gb|EEE84229.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/152 (85%), Positives = 143/152 (94%), Gaps = 2/152 (1%)

Query: 30  RCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGY 89
           +C IAEP+GEPAPLGQKTKY DGFFEKAFMTLFARKMEKFA+PAK+ + +K+K WFD  Y
Sbjct: 5   KCRIAEPTGEPAPLGQKTKYMDGFFEKAFMTLFARKMEKFAAPAKNGSASKEKGWFD--Y 62

Query: 90  DYESFVDVSKRVMEGRSRQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTV 149
           DYESFVDVSKRVM+GR+R+QQQEVVREVLLSMLPPGAP QF+KLFPPTKWAAEFNAALTV
Sbjct: 63  DYESFVDVSKRVMQGRNRKQQQEVVREVLLSMLPPGAPEQFKKLFPPTKWAAEFNAALTV 122

Query: 150 PFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR 181
           PFF WLVGPSEVVEVE+NGEKQ+SGVHIKKCR
Sbjct: 123 PFFQWLVGPSEVVEVEVNGEKQKSGVHIKKCR 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499600|ref|XP_003518626.1| PREDICTED: uncharacterized protein LOC100815863 [Glycine max]

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/189 (74%), Positives = 153/189 (80%), Gaps = 10/189 (5%)

Query: 1   MVVLSLQVVRFPTPPYQISLRRQSTDKI-------TRCGIAEPSGEPAPLGQKTKYNDGF 53
           MV LSLQ V+    P Q   +R S+           RCGIAEPSGEPAPLGQKT+YNDG 
Sbjct: 1   MVALSLQGVQ--ASPAQPQCQRPSSRGGRAAGVIRIRCGIAEPSGEPAPLGQKTRYNDGI 58

Query: 54  FEKAFMTLFARKMEKFASP-AKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQE 112
           FEKAFMTLFARKMEKFA P A +    + K W+D+GYDYESFVDVS+RVM+ RSR QQQ+
Sbjct: 59  FEKAFMTLFARKMEKFADPPAPAGKARENKGWWDWGYDYESFVDVSRRVMQRRSRIQQQQ 118

Query: 113 VVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQR 172
           VVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFF WLVGPSEV+EVEING KQ+
Sbjct: 119 VVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFDWLVGPSEVMEVEINGVKQK 178

Query: 173 SGVHIKKCR 181
           SGVHIKKCR
Sbjct: 179 SGVHIKKCR 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462337|ref|XP_003601450.1| hypothetical protein MTR_3g080840 [Medicago truncatula] gi|357517075|ref|XP_003628826.1| hypothetical protein MTR_8g067370 [Medicago truncatula] gi|355490498|gb|AES71701.1| hypothetical protein MTR_3g080840 [Medicago truncatula] gi|355522848|gb|AET03302.1| hypothetical protein MTR_8g067370 [Medicago truncatula]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 151/186 (81%), Gaps = 8/186 (4%)

Query: 1   MVVLSLQVV--RFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAF 58
           MVVLS QVV     TPP Q + R  ++    RCGIAEPSGEPAPLGQKT+YND  FEK F
Sbjct: 1   MVVLSFQVVPQLIITPP-QYAPR--ASGATIRCGIAEPSGEPAPLGQKTRYNDSIFEKVF 57

Query: 59  MTLFARKMEKFASP--AKSKTETKKKRWFD-FGYDYESFVDVSKRVMEGRSRQQQQEVVR 115
           MTLFARKME FA P    +K + +KK   D + YDYESFVDVSKRVM  RSR QQQ+VVR
Sbjct: 58  MTLFARKMEPFAEPVIGNAKKKKEKKGLLDVWEYDYESFVDVSKRVMLRRSRLQQQQVVR 117

Query: 116 EVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGV 175
           EVLLSMLPPGAPAQFRKLFPPT+WAAEFNAALTVPFFHWLVGPSEV+EVEING KQ+SGV
Sbjct: 118 EVLLSMLPPGAPAQFRKLFPPTRWAAEFNAALTVPFFHWLVGPSEVIEVEINGVKQKSGV 177

Query: 176 HIKKCR 181
           HIKKCR
Sbjct: 178 HIKKCR 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547509|ref|XP_003542154.1| PREDICTED: uncharacterized protein LOC100780474 [Glycine max]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 139/185 (75%), Positives = 150/185 (81%), Gaps = 6/185 (3%)

Query: 1   MVVLSLQVVRF----PTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEK 56
           MV LS Q  R     P  P   S R     +I RCGIAEPSGEPAPLGQKT+Y+DG FEK
Sbjct: 1   MVALSFQGGRASPAQPQHPSLCSGRAAGVIRI-RCGIAEPSGEPAPLGQKTRYHDGIFEK 59

Query: 57  AFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVRE 116
           AFMTLFARKMEKF+ P   K   + K W+D+GYDYESFVDVS+RVM+ RSR QQQ+VVRE
Sbjct: 60  AFMTLFARKMEKFSDPPAGKAR-ENKGWWDWGYDYESFVDVSRRVMQRRSRIQQQQVVRE 118

Query: 117 VLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVH 176
           VLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFF WLVGPSEVVEVEING KQ+SGVH
Sbjct: 119 VLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFDWLVGPSEVVEVEINGVKQKSGVH 178

Query: 177 IKKCR 181
           IKKCR
Sbjct: 179 IKKCR 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491274|gb|AFK33703.1| unknown [Medicago truncatula]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 138/186 (74%), Positives = 151/186 (81%), Gaps = 8/186 (4%)

Query: 1   MVVLSLQVV--RFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAF 58
           MVVLS QVV     TPP Q + R  ++    RCGIAEPSGEPAPLGQKT+YND  FEK F
Sbjct: 1   MVVLSFQVVPQLIITPP-QYAPR--ASGATIRCGIAEPSGEPAPLGQKTRYNDSIFEKVF 57

Query: 59  MTLFARKMEKFASP--AKSKTETKKKRWFD-FGYDYESFVDVSKRVMEGRSRQQQQEVVR 115
           MTLFARKME FA P    +K + +KK   D + YDYESFVDVSKRVM  RSR +QQ+VVR
Sbjct: 58  MTLFARKMEPFAEPVIGNAKKKKEKKGLLDVWEYDYESFVDVSKRVMLRRSRLRQQQVVR 117

Query: 116 EVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGV 175
           EVLLSMLPPGAPAQFRKLFPPT+WAAEFNAALTVPFFHWLVGPSEV+EVEING KQ+SGV
Sbjct: 118 EVLLSMLPPGAPAQFRKLFPPTRWAAEFNAALTVPFFHWLVGPSEVIEVEINGVKQKSGV 177

Query: 176 HIKKCR 181
           HIKKCR
Sbjct: 178 HIKKCR 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839973|ref|XP_002887868.1| hypothetical protein ARALYDRAFT_474875 [Arabidopsis lyrata subsp. lyrata] gi|297333709|gb|EFH64127.1| hypothetical protein ARALYDRAFT_474875 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 141/179 (78%), Gaps = 15/179 (8%)

Query: 3   VLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLF 62
           + SLQ V        ++LRR+ T    RCGIAEPSGEPAP+G KT+Y+DG  E+ FM LF
Sbjct: 4   IASLQAV-------NLTLRRRGT----RCGIAEPSGEPAPMGLKTRYDDGLVERVFMGLF 52

Query: 63  ARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLSML 122
           ARKM+KF S  K K   +K  W    YDYESFV+VSKRVM+GRSR QQQE VREVLLSML
Sbjct: 53  ARKMDKFGS-KKKKETKEKGFW---EYDYESFVEVSKRVMQGRSRVQQQEAVREVLLSML 108

Query: 123 PPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR 181
           PPGAP QFRKLFPPTKWAAEFNAALTVPFFHWLVGPS+V+EVE+NG KQRSGV IKKCR
Sbjct: 109 PPGAPQQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKCR 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2010856	250	AT1G64680 "AT1G64680" [Arabido	0.861	0.624	0.664	8.9e-54
TAIR|locus:505006097	264	D27 "AT1G03055" [Arabidopsis t	0.668	0.458	0.320	1.3e-12
TAIR|locus:504955232	258	AT4G01995 "AT4G01995" [Arabido	0.911	0.639	0.274	0.00042

TAIR|locus:2010856 AT1G64680 "AT1G64680" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 109/164 (66%), Positives = 126/164 (76%)

Query:    18 ISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKT 77
             ++ RR+ST    RCGIAEPSGEPAP+G KT+Y DG  E+ FM LFARKM+KF S  K K 
Sbjct:    12 LTFRRRST----RCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGS--KKKK 65

Query:    78 ETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXXXXXXXXXXXXMLPPGAPAQFRKLFPPT 137
             +TK+K +++  YDYESFV+VSKRVM+G                MLPPGAP QFRKLFPPT
Sbjct:    66 DTKEKGFWE--YDYESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLFPPT 123

Query:   138 KWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCR 181
             KWAAEFNAALTVPFFHWLVGPS+V+EVE+NG KQRSGV IKKCR
Sbjct:   124 KWAAEFNAALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKCR 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:505006097 D27 "AT1G03055" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 42/131 (32%), Positives = 59/131 (45%)

Query:    51 DGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXX 110
             D FF K  +   ++ ++  A  + S   T          DY+  VD + RV         
Sbjct:    67 DSFFSKIAINYLSKNLQDAAGISSSSKST----------DYDRLVDTATRVSRNFDTKQQ 116

Query:   111 XXXXXXXXXXMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEK 170
                        LP    +  +  FPP+K + E  A  T   F WLVGPSEV E E+NG K
Sbjct:   117 HEFVLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVNGRK 176

Query:   171 QRSGVHIKKCR 181
             ++S V+I+KCR
Sbjct:   177 EKSVVYIEKCR 187

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009536 "plastid" evidence=IDA

GO:0010223 "secondary shoot formation" evidence=IMP

GO:1901601 "strigolactone biosynthetic process" evidence=IGI

TAIR|locus:504955232 AT4G01995 "AT4G01995" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00042, P = 0.00042
 Identities = 53/193 (27%), Positives = 84/193 (43%)

Query:     1 MVVLSLQVVRFPTPPYQISLRRQSTDKIT-----RCGIAEPSGEPAPLGQ-KTKYNDGFF 54
             M VL +QV+  P PP  I      + K+      RC I+  S   +  G  K +Y  G  
Sbjct:     1 MAVL-IQVL-LP-PPTTIVFSNSFSTKLILTRRLRCRISNSSEVKSDEGAPKLEYKPGPL 57

Query:    55 EKAFMTLFARKM-EKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVM-EGXXXXXXXX 112
             +  FM  F  K+ E+  S      +++K      GY     +++ K ++ +G        
Sbjct:    58 DDFFMQSFRNKLVEEVGS------DSEKP-----GY--VGLIELVKLLLLKGRTRSETSD 104

Query:   113 XXXXXXXXMLPPGAPAQFRKLFPPT---KWAAEFNAALTVPFFHWLVGPSEVVEVEI-NG 168
                     + PP     ++ L  P    K AA   A +TV    WL+GPS+V  +++ NG
Sbjct:   105 AAVRILKSLFPPLILELYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNG 164

Query:   169 EKQRSGVHIKKCR 181
             E   SGV ++KC+
Sbjct:   165 ESWDSGVFVEKCQ 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       165   0.00093  107 3  11 22  0.37    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  154 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.26u 0.08s 14.34t   Elapsed:  00:00:01
  Total cpu time:  14.26u 0.08s 14.34t   Elapsed:  00:00:01
  Start:  Fri May 10 12:20:51 2013   End:  Fri May 10 12:20:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000511001 SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (266 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
pfam13225	85	pfam13225, DUF4033, Domain of unknown function (DU	4e-09
cd00580	113	cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate i	0.004

>gnl|CDD|221990 pfam13225, DUF4033, Domain of unknown function (DUF4033)

 Score = 50.7 bits (122), Expect = 4e-09
 Identities = 19/29 (65%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 154 WLVGPSEVVEVEIN-GEKQRSGVHIKKCR 181
           WLVGP EV EVE   G  ++SGV IKKCR
Sbjct: 1   WLVGPCEVNEVENGLGRGEKSGVLIKKCR 29

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 80 amino acids in length. Length = 85

>gnl|CDD|238324 cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 93  SFVDVSKRVMEGRSRQQQQEV---VREVLLSMLPP 124
           +F+ V+ R++ GRS +Q+QE+   +   L + L P
Sbjct: 59  AFIHVTLRILAGRSEEQKQELSEALLAALRAHLAP 93

This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PF13225	86	DUF4033: Domain of unknown function (DUF4033)	95.59

>PF13225 DUF4033: Domain of unknown function (DUF4033)

Probab=95.59  E-value=0.0048  Score=46.44  Aligned_cols=16  Identities=69%  Similarity=1.111  Sum_probs=14.9

Q ss_pred             ecCeeeecceEeccCC
Q 030186          166 INGEKQRSGVHIKKCR  181 (181)
Q Consensus       166 vdG~k~~sgV~IeKCR  181 (181)
                      .||.+++|||||||||
T Consensus        15 ~~~~~~~sgV~i~kCR   30 (86)
T PF13225_consen   15 GNGRGQKSGVHIEKCR   30 (86)
T ss_pred             CCCccccceEEEEEeE
Confidence            6899999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00