BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030187
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 371 bits (953), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/181 (98%), Positives = 180/181 (99%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 4 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 64 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
Query: 181 A 181
A
Sbjct: 184 A 184
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 330 bits (847), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/180 (88%), Positives = 167/180 (92%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG F LF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 328 bits (841), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 158/176 (89%), Positives = 165/176 (93%)
Query: 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 64
F LF LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT
Sbjct: 4 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 63
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF
Sbjct: 64 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 123
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
ANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 124 ANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 323 bits (827), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 155/169 (91%), Positives = 162/169 (95%)
Query: 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 71
LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
DKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 313 bits (802), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 150/163 (92%), Positives = 157/163 (96%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 311 bits (797), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 145/180 (80%), Positives = 161/180 (89%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
I FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+R+ E DEL +ML DELRDAV
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LL+FANKQDLPNAM +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 310 bits (794), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/163 (91%), Positives = 156/163 (95%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG DKIRPL
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAA
Sbjct: 63 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
EITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 309 bits (791), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 142/181 (78%), Positives = 165/181 (91%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL +KLFS LF KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN
Sbjct: 1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR R+ EAR+ + RMLNEDELR+AV
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQSTCATSGEGLYEGL+WLSNN+ N+
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180
Query: 181 A 181
+
Sbjct: 181 S 181
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 305 bits (782), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 142/173 (82%), Positives = 157/173 (90%)
Query: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 67
LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWD
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
VGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVFANK
Sbjct: 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
QD+PNAM +E+TDKLGL LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 302 bits (774), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 136/179 (75%), Positives = 168/179 (93%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++N
Sbjct: 1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+ELHRM+NE+EL+DA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
+LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 139/178 (78%), Positives = 161/178 (90%)
Query: 2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
GL +KLFS LF KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNI
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
SFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++ N
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 293 bits (750), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 133/174 (76%), Positives = 157/174 (90%)
Query: 4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
S S+L KKEMRILMVGLDAAGKT+ILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 SMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
TVWDVGGQDKIRPLWRHY+QNTQ +IFVVDSNDRDR+ EAR+EL +MLNEDE+R+A+LLV
Sbjct: 64 TVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLV 123
Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
FANK DLP AM+ +E+T+KLGL +++ R WY Q++CAT+G+GLYEGLDWL++N+
Sbjct: 124 FANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 293 bits (749), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 136/179 (75%), Positives = 156/179 (87%)
Query: 2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
GL +KLFS LF KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVE V+Y NI
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121
SFTVWDVGGQD+IR LWRHY+ NT+G+IFVVDSNDR R+ EAR+ + RMLNEDEL +A
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN + N
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLKNS 180
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 283 bits (725), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 129/162 (79%), Positives = 150/162 (92%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR L
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHY++NT+G+IFVVDSNDR R+ EAR+ + RMLNEDELR+A LVFANKQDLP AM+AA
Sbjct: 61 WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
EIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++ N
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 162
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 272 bits (695), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 122/170 (71%), Positives = 147/170 (86%)
Query: 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
K+ S++F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
KQDLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 272 bits (695), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 122/170 (71%), Positives = 147/170 (86%)
Query: 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
K+ S++F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
DVGGQDKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
KQDLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 269 bits (687), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 121/170 (71%), Positives = 146/170 (85%)
Query: 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
K+ S++F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VW
Sbjct: 3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126
DVGG DKIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FAN
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
KQDLP+AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 268 bits (686), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 120/168 (71%), Positives = 144/168 (85%)
Query: 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQD
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
KIRPLWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
AM EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N +K
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 260 bits (664), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 117/159 (73%), Positives = 139/159 (87%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPL
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 259 bits (662), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 117/159 (73%), Positives = 139/159 (87%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPL
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 259 bits (661), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 117/160 (73%), Positives = 139/160 (86%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGG DKIRP
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
LWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 162
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 259 bits (661), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 117/160 (73%), Positives = 139/160 (86%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGG DKIRP
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
LWRHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
EI +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 161
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 135/158 (85%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
RIL +GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLW
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
RHY+ TQGLIFVVD DRDR+ EAR ELHR++N+ E RDA++L+FANKQDLP+A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176
I +KLGL +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 218 bits (554), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 135/178 (75%), Gaps = 1/178 (0%)
Query: 1 MGLSFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
MG F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
N+ VWD+GGQ IRP WR Y+ +T +IFVVDS D+DR+ A ELH ML E+EL+DA
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
LLVFANKQD P A++A+E++ +L L L+ R W I ++ A GEG+ EGLDWL + I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 125/165 (75%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ IR
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
P WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+ AM
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+E+ + LGL +L+ R W I T AT G GL E ++WL + ++
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 206 bits (525), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 124/164 (75%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG IR
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
P WR Y+ NT +I+VVDS DRDR+ ++ EL ML E+ELR A+L+VFANKQD+ AM
Sbjct: 63 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
++E+ + LGL +L+ R W I T AT G GL E ++WL + +
Sbjct: 123 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 194 bits (492), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 127/178 (71%), Gaps = 1/178 (0%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL F KL+S LF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + KN
Sbjct: 1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ ++EL+RML ++LR A
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178
+L+FANKQD+ M AAEI+ L L S++ W+IQS CA +GEGL +GL+W+++ I
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIG 177
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 132/170 (77%)
Query: 4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
S + L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++YKNISF
Sbjct: 9 SLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISF 68
Query: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
VWD+GGQ +RP WR YF +T +I+VVDS DRDR+ A+ EL+ +L+EDELR ++LL+
Sbjct: 69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLI 128
Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
FANKQDLP+A + AEI ++LG+ S+ R W I + + +G+GL EG+DWL
Sbjct: 129 FANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 186 bits (471), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG+ FT+++ RLF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MG+ FT+++ RLF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
F +WD+GGQ+ +R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
LL+FANKQD+ M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 119/165 (72%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG IR
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
P WR Y+ NT +I+VVDS DRDR+ ++ EL L E+ELR A+L+VFANKQD A
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
++E + LGL +L+ R W I T AT G GL E +WL + ++
Sbjct: 126 SSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 113/160 (70%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+ +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N F +WD+GGQ+
Sbjct: 19 SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
+R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A LL+FANKQD+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 178
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 117/166 (70%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 133
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
++ I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 134 SSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 112/160 (70%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73
+E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N F +WD+GGQ+
Sbjct: 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
+R W Y+ NT+ +I VVDS DR+R+ R+EL++ML ++LR A LL+FANKQD+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
M AEI+ L L S++ W+IQ+ CA +GEGL +GL+W+
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 116/166 (69%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
++E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 136 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 116/166 (69%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
++E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
+ I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 136 SXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 112/163 (68%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77
+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++ +WDVGG +R
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137
WR+YF++T GLI+VVDS DR R+ + + EL +L E+ L A LL+FANKQDLP A++
Sbjct: 62 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
I + L L S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 104/155 (67%)
Query: 26 DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85
D AGKTTIL K ++ T PT+GFN++T+E++ +WDVGGQ +R WR+YF++T
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145
GLI+VVDS DR R + + EL +L E+ L A LL+FANKQDLP A++ I + L L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
S+R HW IQ A +GE L G+DWL ++I+++
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 112/165 (67%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GGQ KIR
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
P WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+ K
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 112/165 (67%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
+E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GGQ KIR
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
P WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
A+EI + L LH++R R W IQS A +GEG+ +G++W+ N+ K
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 110/161 (68%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GGQ KIRP
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A A
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+EI + L LH++R R W IQS A +GEG+ +G++W+ N+
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 109/161 (67%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76
E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GG KIRP
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRP 63
Query: 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
WR YF+NT LI+V+DS DR R E EL +L E++L +L+FANKQDL A A
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+EI + L LH++R R W IQS A +GEG+ +G++W+ N+
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71
KE+ +L +GLD +GKTTI+ KLK + +PTIGF++E + ++SFTV+D+ GQ
Sbjct: 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQ 77
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQD 129
+ R LW HY++ Q +IFV+DS+DR R+V A++EL +LN ++ R +L FANK D
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
L +A+ + +++ L L +++ + W+I ++ A GEGL EG+DWL + I
Sbjct: 138 LRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 98/161 (60%), Gaps = 1/161 (0%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQD 72
+K+EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ +WD+GGQ
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQP 78
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R +W Y + +++++D+ DR+++ +R+ELH +L++ +L+ +LV NK+DLPN
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
A++ ++ +K+ L +++ R S + + L WL
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Query: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWD 67
F LF K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ +WD
Sbjct: 23 FKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 82
Query: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
+GGQ + R +W Y + ++++VD+ D++++ +++ELH +L++ +L+ +LV NK
Sbjct: 83 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 142
Query: 128 QDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
+DLP A++ E+ +K+ L +++ R S + + L WL
Sbjct: 143 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 102/178 (57%), Gaps = 10/178 (5%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71
+K +++++M GLD +GKTTI+ ++K + + T+G+NVET E ++FTV+D+GG
Sbjct: 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGA 73
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-------LLVF 124
K R LW Y+ N +IFVVDS+D R+ + E+ ML +++R + L F
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133
Query: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGEGLYEGLDWLSNNIANKA 181
ANK D A AAE+ + L L +L H + I ++ G G++EG WL + ++
Sbjct: 134 ANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+K+EM + +VGL +GKTT + + G+ IPT+GFN+ + N++ +WD+GGQ
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQP 78
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R +W Y + ++++VD+ D++++ +++ELH +L++ +L+ +LV NK+DLP
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
A++ E+ +K+ L +++ R S + + L WL
Sbjct: 139 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75
K ++L +GLD AGKTT+L+ LK + T PT E + NI FT +D+GG + R
Sbjct: 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135
LW+ YF G++F+VD+ D +R EAR EL + N EL+D ++ NK D PNA++
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 136 AAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 177
AE+ LGL + QR + G E WLS I
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78
++L +GLD AGKTT+L+ LK + T PT E + NI FT +D+GG + R LW
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138
+ YF G++F+VD+ D +R EAR EL + N EL+D ++ NK D PNA++ AE
Sbjct: 63 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 139 ITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLS 174
+ LGL + QR + G E WLS
Sbjct: 123 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG ++
Sbjct: 33 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQA 92
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W++Y G++F+VD D R+VE++ EL+ ++ ++ + + +L+ NK D +A+
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAI 152
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ ++ + GL+ L R + +G EG WLS I
Sbjct: 153 SEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG +
Sbjct: 20 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 79
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+ NK D P A+
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 139
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + GL+ L R + +G EG W++ I
Sbjct: 140 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+ NK D P A+
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + GL+ L R + +G EG W++ I
Sbjct: 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG +
Sbjct: 14 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQA 73
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W++Y G++F+VD D +R++E+++EL ++ ++ + + +L+ NK D P A+
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 133
Query: 135 NAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
+ + + GL+ L R + +G EG W++ I
Sbjct: 134 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T +PT G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
M+IL++G GK+ +L + K T I F ++TV+ K + +WD GQ+
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G+I V D D +R + + +NE +A LL+ NK D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 133 AMNAAE 138
+ A+
Sbjct: 123 RVVTAD 128
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
M+IL++G GK+ +L + K T I F ++TV+ K + +WD GQ+
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G+I V D D +R + + +NE +A LL+ NK D+
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 133 AMNAAE 138
+ A+
Sbjct: 140 RVVTAD 145
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQD 72
M+IL++G GK+ +L + K T I F ++TV+ K + +WD GQ+
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G+I V D D +R + + +NE +A LL+ NK D+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 133 AMNAAE 138
+ A+
Sbjct: 127 RVVTAD 132
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 18 MRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQ 71
++L++G GK+++L + G +TTI + F + TVE + + +WD GQ
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-VDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y++ T G+I V D + V + LH + D ++ NK D P
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP 126
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 150 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 209
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 210 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 183 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 242
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 243 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 279
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 147 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 206
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 207 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 145 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 204
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 205 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 152 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 211
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 212 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 10 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFL 149
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 10 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFL 149
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 153 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 179 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 239 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G +K+++F ++DVGGQ R W H F+ +IF V +D D V+ +
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 106 ELHRMLNEDELRDAV----------LLVFANKQDL 130
E++RM +L D++ +++F NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKL 39
A KE+++L++G +GK+TI+ ++K+
Sbjct: 6 AAKEVKLLLLGAGESGKSTIVKQMKI 31
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKL 39
A KE+++L++G +GK+TI+ ++K+
Sbjct: 6 AAKEVKLLLLGAGESGKSTIVKQMKI 31
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 146 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 242
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 176 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 272
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKL 39
A KE+++L++G +GK+TI+ ++K+
Sbjct: 29 AAKEVKLLLLGAGESGKSTIVKQMKI 54
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 19 RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+ +L + K T I F ++TV+ K + +WD GQ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
R + Y++ G+I V D D +R + + +NE +A LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 MNAAE 138
+ A+
Sbjct: 124 VVTAD 128
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
+ + T G +K+++F ++DVGGQ R W H F+ +IF V +D D V+
Sbjct: 179 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
+E++RM N D +++F NK+DL
Sbjct: 239 DEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYK------------NIS 62
+++L +G GKTT LY+ K T I F + V Y +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD GQ++ R L +F++ G + + D + + R+ + ++ + ++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162
+ NK DLP N A E+ DK G+ Y +++ AT
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIP-------YFETSAATG 183
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 19 RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDK 73
+IL++G GK+ +L + K T I F ++TV+ K + +WD GQ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
R + Y++ G+I V D D +R + + +NE +A LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 MNAAE 138
+ A+
Sbjct: 124 VVTAD 128
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 34 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 147
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGIPFL 173
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ +T I TIG F + T+E K I +WD GQ+
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G++ V D + R+ + R + E D ++ NK D+ +
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 127
Query: 133 AMNAA-EITDKLGL 145
+ E +KL L
Sbjct: 128 KRQVSKERGEKLAL 141
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 7 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
++L++G GKT +L++ +T I TIG F + T+E K I +WD GQ+
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G++ V D + R+ + R + E D ++ NK D+ +
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 125
Query: 133 AMNAA-EITDKLGL 145
+ E +KL L
Sbjct: 126 KRQVSKERGEKLAL 139
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 7 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGGQ 71
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD GQ
Sbjct: 1 KLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 58
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 59 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKC 114
Query: 129 DLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 115 DLTTKKVVDYTTAKEFADSLGIPFL 139
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 17 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 128 QDLP-----NAMNAAEITDKLGLHSLR 149
DL + A E D LG+ L
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFLE 157
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 26 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 84 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 139
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGIPFL 165
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DV GQ R W H F+ +IF V +D D V+
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVG Q R W H F+ +IF V +D D V+
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVET--VEYKNISFTVWDVGGQ 71
++IL++G GK+++L + E+ TI + F V+T V+ +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R L Y++ QG+I V D RD V+ + L+ + D V + NK D
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
N E+ GL R+ A + +G+ + L I
Sbjct: 135 N----REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 17 FKLLLIGDSGVGKNCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ NK
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFL 156
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DV GQ R W H F+ +IF V +D D V+
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
+E++RM N D +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDL 273
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLK---LGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQ 71
+++++++G GKT+++ + E + + F ++TVE K I +WD GQ
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDELRDAVLLVFANKQ 128
++ + Y+++ +G+I V D + E D+L +M+++ DA LL+ NK
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKK----ETFDDLPKWMKMIDKYASEDAELLLVGNKL 141
Query: 129 DL 130
D
Sbjct: 142 DC 143
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +K++ F ++DVGG R W H F+ +IF V +D D V+
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E++RM +L D++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETV--EYKNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+ E K + +WD G
Sbjct: 10 FKLLLIGDSGVGKSCLL--LRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG 67
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
Q++ R + Y++ G+I V D DRD
Sbjct: 68 QERFRTITSSYYRGAHGIIIVYDVTDRD 95
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDVGG 70
+E+++ ++G GK++I+++ I PTIG F +TV+Y+N F +WD G
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ R L Y++ + I V D + ++ + R L + V+ + NK DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKCDL 122
Query: 131 PNAMNAAE 138
+ E
Sbjct: 123 TDVREVME 130
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNISFTVWDVGGQD 72
++++++G A GK++I+ + + PTIG F + T+ + F +WD GQ+
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ L Y++N Q + V D ++AR + + L+E +D ++ + NK D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWV-KELHEQASKDIIIALVGNKIDXLQ 122
Query: 133 AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
++ + G ++ T A +GE +
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
T + T G +KN+ F ++DVGGQ R W H F++ +IF V + D+V+
Sbjct: 157 TRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHE 216
Query: 104 RDELHRM----------LNEDELRDAVLLVFANKQDL 130
+ +RM N D +++F NK+DL
Sbjct: 217 DETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F ++TVE K + +WD G
Sbjct: 9 FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ + G+I V D D++ + E+ R L+ L+ NK
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 128 QDLPN 132
DL +
Sbjct: 123 CDLKD 127
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F ++TVE K + +WD G
Sbjct: 9 FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ + G+I V D D++ + E+ R L+ L+ NK
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 128 QDLPN 132
DL +
Sbjct: 123 CDLKD 127
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
+ + T G +K+++F +DVGGQ R W H F+ +IF V +D D V+
Sbjct: 173 SRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 232
Query: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
+E +R +L D++ +++F NK+DL
Sbjct: 233 DEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F ++TVE K + +WD G
Sbjct: 22 FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ + G+I V D D++ + E+ R L+ L+ NK
Sbjct: 80 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 135
Query: 128 QDLPN 132
DL +
Sbjct: 136 CDLKD 140
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE 106
PT G + +K++ F ++DVGGQ R W F+ +IF V +D D+V+ +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 107 LHRMLNEDELRDAV----------LLVFANKQDL 130
+RM +L D++ +++F NK+DL
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGG 70
++L++G GK+ +L L+ + T I TIG F + T+E K I +WD G
Sbjct: 9 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANK 127
Q++ R + Y++ G+I V D D++ + E+ R +E+ + L+ K
Sbjct: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGIK 122
Query: 128 QDLP-----NAMNAAEITDKLGLHSL 148
DL + A E D LG+ L
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGIPFL 148
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDV 68
A +E+++ ++G GK++I+++ I PTIG F +TV+Y+N F +WD
Sbjct: 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
G ++ R L Y++ + I V D + ++ + R L + V+ + NK
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKC 121
Query: 129 DLPNAMNAAE 138
DL + E
Sbjct: 122 DLTDVREVME 131
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNISFT--VWDVG 69
KK ++I++VG A GKT +L GEI T +PT+ N V +YKN F +WD
Sbjct: 19 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 78
Query: 70 GQ---DKIRPL 77
GQ D++RPL
Sbjct: 79 GQEEYDRLRPL 89
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNISFT--VWDVG 69
KK ++I++VG A GKT +L GEI T +PT+ N V +YKN F +WD
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 70 GQ---DKIRPL 77
GQ D++RPL
Sbjct: 80 GQEEYDRLRPL 90
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+L++G GK+ +L L+ + T I TIG F + T+E K I +WD GQ+
Sbjct: 1 LLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 58
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ R + Y++ G+I V D D++ V + E+ R +E+ + L+ NK D
Sbjct: 59 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKCD 114
Query: 130 LP 131
L
Sbjct: 115 LT 116
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------IS 62
+++L +G GKTT LY+ K T I F + V Y +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD G ++ R L +F++ G + + D + + R+ + ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
+ NK DLP N A E+ +K G+ Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------IS 62
+++L +G GKTT LY+ K T I F + V Y +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD G ++ R L +F++ G + + D + + R+ + ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
+ NK DLP N A E+ +K G+ Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNISFTVWDVGGQ 71
++++VG GKT +L + K G + T I T+G + V V+ + +WD GQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128
++ R + Y+++ L+ + D ++ D + E+H E D L++ NK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH----EYAQHDVALMLLGNKV 126
Query: 129 D 129
D
Sbjct: 127 D 127
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--IS 62
L R A +E+++ ++G GK++I+ + I PTIG F +TV N
Sbjct: 14 LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
F +WD GQ++ L Y++ + + V D +D + + + L E + V+
Sbjct: 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWV-KELKEHGPENIVMA 132
Query: 123 VFANKQDL 130
+ NK DL
Sbjct: 133 IAGNKCDL 140
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ T G +K+++F ++DVGGQ R W H F+ +IF+ + D V+ D
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208
Query: 106 ELHRMLNEDELRDAV----------LLVFANKQDL 130
E++RM L +++ +++F NK+D+
Sbjct: 209 EVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GKT+++ + + I T+G + T + K ++ +WD GQ+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ L Y++++ G I V D D D + ++ EL +ML + L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
L + + + S+ +H++ T A +G+ E
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYH---TSAKQNKGIEE 158
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+ D
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
+RM L +++ +++F NK+DL
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+ D
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
+RM L +++ +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+
Sbjct: 170 VCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 229
Query: 104 RDELHRMLNEDEL----------RDAVLLVFANKQDL 130
D +RM L +++ +++F NK+DL
Sbjct: 230 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+ D
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
+RM L +++ +++F NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+PT G + +++ F + DVGGQ R W H F+N ++F+V ++ D+V+ D
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 106 ELHRMLNEDEL----------RDAVLLVFANKQDL 130
+RM L +++ +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 122
Query: 129 DLPN 132
DL N
Sbjct: 123 DLAN 126
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 27/164 (16%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------IS 62
+++L +G GKTT LY+ K T I F + V Y +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD G ++ R L +F++ G + D + + R+ ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
+ NK DLP N A E+ +K G+ Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFT 64
SR+F +I+++G GKT + Y+ G T TIG + ++ + I
Sbjct: 27 SRIF-----KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 65 VWDVGGQDKIR-PLWRHYFQNTQGLIFVVDSND 96
+WD GQ++ R + +HY++N ++FV D +
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTN 114
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 27/164 (16%)
Query: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------IS 62
+++L +G GKTT LY+ K T I F + V Y +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD G ++ R L +F++ G + D + + R+ ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLP-----NAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161
+ NK DLP N A E+ +K G+ Y +++ AT
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT 168
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN---ISFTVWDVGGQ 71
+IL++G + GKT+ L++ + T+G F V+T+ Y+N I +WD GQ
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGQ 64
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y++ G I + D + + +D + +A +L+ NK D+
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDME 123
Query: 132 N-----AMNAAEITDKLGLH 146
+ + ++ D LG
Sbjct: 124 DERVVSSERGRQLADHLGFE 143
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
DL N
Sbjct: 122 DLAN 125
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 67 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 122
Query: 129 DLPN 132
DL N
Sbjct: 123 DLAN 126
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFT 64
SR+F +I+++G GKT + Y+ G T TIG + ++ + I
Sbjct: 18 SRIF-----KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 72
Query: 65 VWDVGGQDKIR-PLWRHYFQNTQGLIFVVD 93
+WD GQ++ R + +HY++N ++FV D
Sbjct: 73 LWDTAGQERFRKSMVQHYYRNVHAVVFVYD 102
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 71
+I+++G GK+ +L + E + + TIG F ++++ KN I +WD GQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y++ G + V D ++ E ++ + L ++ + V+L+ NK DL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNS-FENIEKWLKELRDNADSNIVILLVGNKSDLK 126
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 72
++L++G + GKT+ L++ + T+G F V+TV K I +WD GQ+
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ R + Y++ G + + D +++ +D ++ V+LV NK DL +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV-GNKCDLED 141
Query: 133 -----AMNAAEITDKLGLH 146
A + + D LG
Sbjct: 142 ERVVPAEDGRRLADDLGFE 160
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-------- 98
PT G + E KN+ F + DVGGQ R W F + ++F+V S++ D
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 99 --RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R+ E+ + ++N + +++F NK DL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQD 72
++++VG + GKT ++ + K G TIG F ++T+E K + +WD GQ+
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR 97
+ R + + Y+++ G I D R
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKR 114
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-------- 98
PT G + E KN+ F + DVGGQ R W F + ++F+V S++ D
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 99 --RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R+ E+ + ++N + +++F NK DL
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+++++G GKT+++ K I T + + K ++ +WD GQ+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ L Y++++ G I V D D D + ++ EL +ML + L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
L + + + S+ +H++ T A +G+ E
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYH---TSAKQNKGIEE 158
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+++++G GKT+++ K I T + + K ++ +WD GQ+
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQD 129
+ L Y++++ G I V D D D + ++ EL +ML + L + NK D
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 136
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168
L + + + S+ +H++ T A +G+ E
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYH---TSAKQNKGIEE 172
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + D A++ EL R + + V+ + NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKA 120
Query: 129 DLPN 132
DL +
Sbjct: 121 DLAS 124
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G+ TIG F +TV + + F +WD GQ
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + D A++ EL R + + V+ + NK
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKA 118
Query: 129 DLPN 132
DL +
Sbjct: 119 DLAS 122
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ L++G GK+ +L+ K K T G V V K + +WD GQ+
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQD 129
+ R + R Y++ G + V D R E + L L + + V+++ NK+D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSR----ETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
L E+T ++ T A +GE + E + I NK
Sbjct: 142 LDPER---EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 189
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ L++G GK+ +L+ K K T G + V K + +WD GQ+
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQD 129
+ R + R Y++ G + V D R E + L L + + ++ V+++ NK+D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
L E+T ++ T A +GE + E + I NK
Sbjct: 127 LDADR---EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 174
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ L++G GK+ +L+ K K T G + V K + +WD GQ+
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQD 129
+ R + R Y++ G + V D R E + L L + + ++ V+++ NK+D
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
L E+T ++ T A +GE + E + I NK
Sbjct: 128 LDADR---EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVET--VEYKNISFTVWDV 68
++K +I++ G A GK++ L +L E I T+G F ++T V+ + +WD
Sbjct: 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDT 84
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANK 127
GQ++ R + + YF+ G++ + D + R+ + + ED + V +++ NK
Sbjct: 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI--EDAAHETVPIMLVGNK 142
Query: 128 QDL 130
D+
Sbjct: 143 ADI 145
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G+ TIG F ++V + + F +WD GQ
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D +++ A+ EL R + V+ + NK
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKA 123
Query: 129 DLPN 132
DL N
Sbjct: 124 DLAN 127
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE +PT+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
DL N
Sbjct: 122 DLAN 125
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
DL N
Sbjct: 122 DLAN 125
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
DL N
Sbjct: 122 DLAN 125
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE +PT+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
DL N
Sbjct: 122 DLAN 125
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G GK++++ + G E + F +TV + + F +WD GQ
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 121
Query: 129 DLPN 132
DL N
Sbjct: 122 DLAN 125
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + P TIG T V + I +WD GQ+
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + R Y++ G + V D R L N + V+++ NK DL
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADL 132
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNISFTVWDVGGQD 72
++L++G + GKT+ L++ + T+G F V+TV K + +WD GQ+
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
+ R + Y++ G I + D + + +D
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQ 71
+ +++ +G A GKT+I+ + TIG + + ++ + +WD GQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R L Y +++ I V D +R + +LNE +D ++ + NK DL
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE-RGKDVIIALVGNKTDLG 119
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
+ ++T + G ++ + T A +G +
Sbjct: 120 DLR---KVTYEEGXQKAQEYNTXFHETSAKAGHNI 151
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G E + F +TV + + F +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + + A++ EL R + + V+ + NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKA 120
Query: 129 DLPN 132
DL N
Sbjct: 121 DLAN 124
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK------------NIS 62
++ L +G GKT++LY+ G+ + I T+G F + V Y+ I
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122
+WD G ++ R L +F++ G + + D + + R+ + ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 123 VFANKQDLPNAM-----NAAEITDKLGL 145
+ NK DL + A E+ +K G+
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGI 159
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+I+++G GK+ +L + E + + TIG T +E K I +WD GQ+
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73 KIRPLWRHYFQNTQGLIFVVD 93
+ R + Y++ G + V D
Sbjct: 74 RYRAITSAYYRGAVGALIVYD 94
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 72
+ +++G GK+ +L++ + + P TIG T V + I +WD GQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + R Y++ G + V D R L N + V+++ NK DL
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADL 147
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---ISFTVWDVGGQDKIR- 75
+L VGL +GKT + +L G+ T +I + + N S T+ D+ G + +R
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL--HRMLNEDELRDA-VLLVFANKQDLPN 132
L + + + ++FVVDS R V+ E +++ L+++ LL+ NKQD+
Sbjct: 70 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
Query: 133 AMNAAEITDKL--GLHSLRQRHWYIQSTCATSG 163
A +A I +L L++LR ST +S
Sbjct: 130 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-------- 98
PT G + E KN+ F + DVGG R W F + ++F+V S++ D
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 99 --RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R+ E+ + ++N + +++F NK DL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNISFTVWDVGGQ 71
+ +++++G A GK++++ + G+ TIG F +TV + + F +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128
++ L Y++ Q I V D + D A++ EL R + + V+ + NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKA 120
Query: 129 DLPN 132
DL +
Sbjct: 121 DLAS 124
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
++F ++DVGGQ R W F + +IFVV S N +R+ EA + +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 111 LNEDELRDAVLLVFANKQDL 130
N LR +++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
++F ++DVGGQ R W F + +IFVV S N +R+ EA + +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 111 LNEDELRDAVLLVFANKQDL 130
N LR +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
++F ++DVGGQ R W F + +IFVV S N +R+ EA + +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 111 LNEDELRDAVLLVFANKQDL 130
N LR +++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
++F ++DVGGQ R W F + +IFVV S N +R+ EA + +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 111 LNEDELRDAVLLVFANKQDL 130
N LR +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRM 110
++F ++DVGGQ R W F + +IFVV S N +R+ EA + +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 111 LNEDELRDAVLLVFANKQDL 130
N LR +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET---- 55
MG + LF +I+++G GK+ +L + E + + TIG T
Sbjct: 3 MGYDYDYLF---------KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIE 53
Query: 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93
VE K I +WD G ++ R + Y++ G + V D
Sbjct: 54 VENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYD 91
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 15/171 (8%)
Query: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ L++G GK+ +L+ K K T G + V K + +WD G +
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQD 129
+ R + R Y++ G + V D R E + L L + + ++ V+++ NK+D
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
L E+T ++ T A +GE + E + I NK
Sbjct: 125 LDADR---EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + Y++ G + V D + E + + L + + V+++ NK DL
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIA-KHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + Y++ G + V D + E + + L + + V+++ NK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIA-KHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELH 108
K+I F + DVGGQ R W +F + IFV + D R+ E+
Sbjct: 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFK 218
Query: 109 RMLNEDELRDAVLLVFANKQDL 130
+ + L+ AV L+F NK DL
Sbjct: 219 DIXTNEFLKGAVKLIFLNKXDL 240
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L + +T G + T++ K I +WD GQ+
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
R + R Y++ G + V D RD L + V+++ NK DL +
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN-SNMVIMLIGNKSDLES 129
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN---ISFTVWDVGGQ 71
+IL++G + GKT+ L++ + T+G F V+T+ Y+N I +WD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGL 67
Query: 72 DKIRPLWRHYFQNTQGLIFVVD 93
++ R + Y++ G I D
Sbjct: 68 ERYRTITTAYYRGAXGFILXYD 89
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQD 72
+I+++G GKT ++ + G TIG F ++TVE + + +WD GQ+
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 73 KIRPLWRHYFQNTQGLIFVVD 93
+ R + + Y+++ LI D
Sbjct: 87 RFRSITQSYYRSANALILTYD 107
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNISFTVWDVGGQD 72
++++VG GKTT + + GE I TIG V + + I F VWD G +
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR 97
K L Y+ N Q I + D R
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSR 97
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSR 100
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSR 95
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSR 88
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 72
++++VG GKTT + + GE I TIG V + + I F VWD G +
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR 97
K L Y+ N Q I + D R
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSR 89
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQD 72
++++VG GKTT + + GE I TIG V + + I F VWD G +
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR 97
K L Y+ N Q I + D R
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSR 90
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELH 108
K I F + DVGGQ R W F ++F+V S++ D R+VE+ +
Sbjct: 197 KKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFE 256
Query: 109 RMLNEDELRDAVLLVFANKQDL 130
++N + +++F NK DL
Sbjct: 257 TIVNNKLFFNVSIILFLNKMDL 278
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG T V+ K I +WD GQ+
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVD 93
+ R + Y++ G + V D
Sbjct: 66 RYRRITSAYYRGAVGALLVYD 86
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSR 95
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSR 100
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL- 121
+ ++DVGGQ R W H F+ +IF ++ D+ + ++ +RM+ EL D VL
Sbjct: 185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 244
Query: 122 ---------LVFANKQDL 130
++F NK D+
Sbjct: 245 QPCFEKTSFMLFLNKFDI 262
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Query: 19 RILMVGLDAAGKTTILYKLKL--------GEIVTTIPTIGFNV 53
++L++G +GK+TI ++KL GE+ + +P I NV
Sbjct: 11 KLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANV 53
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 28/163 (17%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIGFNV--ETVEYKNISFTVWDVGG-- 70
+R+++VG GK+T+L +L L E IVT IP +V E + + I F + D G
Sbjct: 244 LRMVIVGKPNVGKSTLLNRL-LNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302
Query: 71 ---QDKIRPLW----RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
D + L + ++FV+D++ DE R + E +++ LV
Sbjct: 303 SETNDLVERLGIERTLQEIEKADIVLFVLDASS------PLDEEDRKILE-RIKNKRYLV 355
Query: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166
NK D+ +N EI +KLG RH A GEGL
Sbjct: 356 VINKVDVVEKINEEEIKNKLGT----DRHMV--KISALKGEGL 392
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKN--ISFTVWDVGGQ 71
+++++G GKT +L + E TTI + F+ TV + +WD G
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-VEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y++ G + V D L + + E V+LV NK DL
Sbjct: 70 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLS 128
Query: 132 NA 133
A
Sbjct: 129 QA 130
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
+ +++G GK+ +L + +T G + ++ K I +WD GQ+
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA---VLLVFANKQD 129
R + R Y++ G + V D R E + L L + + V+++ NK D
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRR----ETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137
Query: 130 LPN 132
L +
Sbjct: 138 LES 140
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN-----ISFTVWDVGGQD 72
+I ++G GKTT + ++ G T+G V + + I F VWD GQ+
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQD 129
K L Y+ G I D R L R + E + +A ++V ANK D
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITC----QNLARWVKEFQAVVGNEAPIVVCANKID 128
Query: 130 LPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATS 162
+ N +I+ KL + L+ +++ Y + + T+
Sbjct: 129 IKNRQ---KISKKLVMEVLKGKNYEYFEISAKTA 159
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
Length = 181
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQ-D 72
RIL+ GL +GK++I +K E + T E V + ++F +WD GQ D
Sbjct: 6 RILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 65
Query: 73 KIRPLWRH--YFQNTQGLIFVVDSNDRDRVVEARDELH 108
P + + F+ T LIFV+DS +D EA LH
Sbjct: 66 FFDPTFDYEXIFRGTGALIFVIDS--QDDYXEALARLH 101
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 13 FAKKEMRILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWD 67
F + RIL++GL +GK++I +K+ E + T + + + ++F +WD
Sbjct: 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWD 75
Query: 68 VGGQ-DKIRPLWRH--YFQNTQGLIFVVDSNDRDRVVEARDELH 108
GQ D P + + F+ T LI+V+D+ +D +EA LH
Sbjct: 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDA--QDDYMEALTRLH 117
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKN--ISFTVWDVGGQ 71
+++++G GKT +L + E TTI + F+ TV + +WD G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-VEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R + Y++ G + V D L + + E V+LV NK DL
Sbjct: 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLS 143
Query: 132 NA 133
A
Sbjct: 144 QA 145
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG T V+ K I +WD G +
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
+ R + Y++ G + V D + E + + L + + V+++ NK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIA-KHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG T V+ K I +WD G +
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFANK 127
+ R + Y++ G + V D + + R L ELRD V+++ NK
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKH----LTYENVERWLK--ELRDHADSNIVIMLVGNK 122
Query: 128 QDL 130
DL
Sbjct: 123 SDL 125
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGG 70
++ +++ +G + GKT+++ + T TIG + + +E + I +WD G
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ R L Y +++ + V D + + + + + E D ++++ NK DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDL 123
Query: 131 PN 132
+
Sbjct: 124 AD 125
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG T V+ K I +WD G +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 73 KIRPLWRHYFQNTQGLIFVVD 93
+ R + Y++ G + V D
Sbjct: 72 RYRAITSAYYRGAVGALLVYD 92
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
+++++G GK+ +L + E + + TIG T V+ K I +WD G +
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVD 93
+ R + Y++ G + V D
Sbjct: 66 RYRAITSAYYRGAVGALLVYD 86
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD G
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD G
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSR 97
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQ 71
+ ++++VG GKTT + + GE + T+G V + + I F VWD G
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDR 97
+K L Y+ Q I + D R
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSR 91
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE----TVEYKNISFTVWDVGGQD 72
+++++VG A GK++++ + G TIG + V +++ +WD GQ+
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRD 98
+ + + Y++ Q + V + DR+
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRE 91
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGG 70
++ +++ +G + GKT+++ + T TIG + + +E + + +WD G
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Q++ R L Y +++ + V D + + + + + E D ++++ NK DL
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDL 131
Query: 131 PN 132
+
Sbjct: 132 SD 133
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 71
++++VG A GKT +L E +PT+ N V+ K + +WD GQ
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F VDS D
Sbjct: 87 DRLRPL---SYPDTDVILMCFSVDSPD 110
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNISFTVWDVGGQDK 73
+++++G AGK++++ + + V +TI F+ V + F +WD GQ++
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDL 130
L Y++ I V D ++ A+ EL N + V+ + NK DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDL 129
Query: 131 PNA 133
+A
Sbjct: 130 LDA 132
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 16 KEMRILMVGLDAAGKT---TILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVG 69
++++I+++G A+GKT T + G+ + F + + N++ +WD+G
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFAN 126
GQ + Y QG++ V D + D + ++ E E + V LV N
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GN 123
Query: 127 KQDLPN 132
K DL +
Sbjct: 124 KIDLEH 129
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQ 71
+ +++ +G + GKT+++ + T TIG + + +E + + +WD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R L Y +++ + V D + + + + + E D ++++ NK DL
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE-RGSDVIIMLVGNKTDLA 120
Query: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163
+ +IT + G ++ T A +G
Sbjct: 121 ---DKRQITIEEGEQRAKELSVMFIETSAKTG 149
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQ 71
+ +++ +G + GKT+++ + T TIG + + +E + + +WD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ R L Y +++ + V D + + + + + E D ++++ NK DL
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLA 119
Query: 132 N 132
+
Sbjct: 120 D 120
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED------EL 116
F ++ V GQ + + G++FV DS + A E R + E+ L
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNR--LRANAESMRNMRENLAEYGLTL 133
Query: 117 RDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
D +++ NK+DLP+A+ + D G + + AT G+G++E L +
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-------KFPVLEAVATEGKGVFETLKEV 186
Query: 174 S 174
S
Sbjct: 187 S 187
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD 90
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD 90
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPD 92
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD 90
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQD 72
E ++++VG D GK+ + +L V PTI + ++ + + D GQ+
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ + Y + +G + V N+ + + R+++ R+ + + D +++ NK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE---DVPMVLVGNKSD 120
Query: 130 LPN 132
LP+
Sbjct: 121 LPS 123
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 67
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 68 DYDRLRPL---SYPDTDVILMCFSIDSPD 93
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPD 92
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----ETVEYKNISFTVWDVGGQDKI 74
++MVGL A GKT I KL PT FN+ E V YKN F + D +I
Sbjct: 6 VIMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAVSYKNYEFFLPDNMEALQI 65
Query: 75 RPLW--------RHYFQNTQGLIFVVDSNDRDR 99
R +Y + +G + V D+ + R
Sbjct: 66 RKQCALAALKDVHNYLSHEEGHVAVFDATNTTR 98
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD 90
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 62
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 63 DYDRLRPL---SYPDTDVILMCFSIDSPD 88
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPD 92
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 62
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 63 DYDRLRPL---SYPDTDVILMCFSIDSPD 88
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 66 DYDRLRPL---SYPDTDVILMCFSIDSPD 91
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 68
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 69 DYDRLRPL---SYPDTDVILMCFSIDSPD 94
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 18/90 (20%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQ 71
++++VG A GKT +L K + E+ +PT+ N +E V+ K + +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYIADIE-VDGKQVELALWDTAGQ 63
Query: 72 ---DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 64 EDYDRLRPL---SYPDTDVILMCFSIDSPD 90
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQDKI 74
+++MVG GK+ + + E V PT + ++ + + + D GQ+
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ +YF++ +G + V + + D ++L E + L+ NK DL +
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQD 72
E ++++VG D GK+ + +L V PTI + ++ + + D GQ+
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ + Y + +G + V N+ + + R+++ R+ + + D +++ NK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE---DVPMVLVGNKCD 120
Query: 130 LPN 132
LP+
Sbjct: 121 LPS 123
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQDKI 74
+++MVG GK+ + + E V PT + ++ + + + D GQ+
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ +YF++ +G + V + + D ++L E + L+ NK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQDKI 74
+++MVG GK+ + + E V PT + ++ + + + D GQ+
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ +YF++ +G + V + + D ++L E + L+ NK DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQDKI 74
+++MVG GK+ + + E V PT + ++ + + + D GQ+
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
+ +YF++ +G + V + + D ++L E + L+ NK DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 125
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 85 DYDRLRPL---SYPDTDVILMCFSIDSPD 110
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNIS----------- 62
+E+++ ++G AGKT++L +L +GE T G NV T + NI
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQL-IGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 63 -FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94
F WD GGQ+ + + + + + ++DS
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 85 DYDRLRPL---SYPDTDVILMCFSIDSPD 110
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 72 --DKIRPLWRHYFQNTQGLI--FVVDSND 96
D++RPL + +T ++ F +DS D
Sbjct: 66 DYDRLRPL---SYPDTDVILMCFSIDSPD 91
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED------EL 116
F ++ V GQ + + G++FV DS + A E R E+ L
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNR--LRANAESXRNXRENLAEYGLTL 133
Query: 117 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174
D +++ NK+DLP+A+ + + + + AT G+G++E L +S
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEXVRAVVDPEG----KFPVLEAVATEGKGVFETLKEVS 187
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTI----GFNVETVEYKNISFTVWDVGG 70
+ +++++VG GKT++L G + PT+ N++ V+ K + +WD G
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQ-VKGKPVHLHIWDTAG 91
Query: 71 Q---DKIRPLW 78
Q D++RPL+
Sbjct: 92 QDDYDRLRPLF 102
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 71
++++VG A GKT +L + +PT+ N V+ K + +WD GQ
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 72 DKIRPLWRHYFQNTQGLI--FVVDSND 96
D+ RPL + +T ++ F +DS D
Sbjct: 67 DRARPL---SYPDTDVILMCFSIDSPD 90
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 18 MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
++++++G GKT+++ YK +G T + V+ + ++ +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVD---SNDRDRVVEARDELHRMLNEDELRDAVLLV 123
D GQ++ + L +++ + V D N + RDE + + + +V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 124 FANKQDLPN 132
NK DL N
Sbjct: 123 LGNKIDLEN 131
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 18 MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
++++++G GKT+++ YK +G T + V+ + ++ +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVD---SNDRDRVVEARDELHRMLNEDELRDAVLLV 123
D GQ++ + L +++ + V D N + RDE + + + +V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 124 FANKQDLPN 132
NK DL N
Sbjct: 123 LGNKIDLEN 131
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQD 72
E ++++VG D GK+ + +L V PTI + ++ + + D GQ+
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129
+ + Y + +G + V N+ + + + R+++ R+ + D D +++ NK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKCD 119
Query: 130 L 130
L
Sbjct: 120 L 120
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 3 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
L + + ++ L AK +L+VG GK T+L K GE ++G + S
Sbjct: 30 LKYPERYANLGAKIPKGVLLVGPPGTGK-TLLAKAVAGEAHVPFFSMGGS---------S 79
Query: 63 FTVWDVG-GQDKIRPLWRHYFQNTQGLIFV--VDSNDRDR----VVEARDELHRMLNE 113
F VG G ++R L+ + +IF+ +D+ + R VV DE + LN+
Sbjct: 80 FIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ 137
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY-----KNISFTVWDV 68
K ++++++G GKT+++++ + TIG + T E K + VWD
Sbjct: 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVD---SNDRDRVVEARDE--LHRMLNEDELRDAVLLV 123
GQ++ + L +++ + V D ++ + + RDE +H +N E V+L
Sbjct: 66 AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL- 124
Query: 124 FANKQD------LPNAMNAAEITDKLG 144
NK D + + +A E+ LG
Sbjct: 125 -GNKIDAEESKKIVSEKSAQELAKSLG 150
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 18 MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVW 66
++++++G GKT+++ YK +G T + V+ + ++ +W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVD---SNDRDRVVEARDELHRMLNEDELRDAVLLV 123
D GQ++ + L +++ + V D N + RDE + + + +V
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 124 FANKQDLPN 132
NK D N
Sbjct: 123 LGNKIDFEN 131
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G V PTI + V+ + + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG V + + +D ++L + D +++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 N 132
+
Sbjct: 122 D 122
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119
NI F +WD GQ++ + Y++ I V D ++ + + A+ ++++ +
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---KISSNY 148
Query: 120 VLLVFANKQD 129
++++ ANK D
Sbjct: 149 IIILVANKID 158
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ 71
+ ++ ++VG A GKT +L IPT+ N V+ K ++ +WD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 72 ---DKIRPLWRHYFQNTQGLIFVVDSNDRDR 99
D++RPL + T G + D R +
Sbjct: 64 EDYDRLRPL---SYPQTVGETYGKDITSRGK 91
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVG 69
AK+ ++ ++VG A GKT +L IPT+ N V+ K ++ +WD
Sbjct: 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211
Query: 70 G---QDKIRPL 77
G D++RPL
Sbjct: 212 GLEDYDRLRPL 222
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G V PTI + V+ + + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG V + + +D ++L + D +++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 N 132
+
Sbjct: 122 D 122
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVG 69
AK+ ++ ++VG A GKT +L IPT+ N V+ K ++ +WD
Sbjct: 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211
Query: 70 G---QDKIRPL 77
G D++RPL
Sbjct: 212 GLEDYDRLRPL 222
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVG 69
AK+ ++ ++VG A GKT +L IPT+ N V+ K ++ +WD
Sbjct: 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 211
Query: 70 G---QDKIRPL 77
G D++RPL
Sbjct: 212 GLEDYDRLRPL 222
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/89 (15%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------ISFTVWDV 68
++++++G GK++++ + + + F+ VE+ N ++ +WD
Sbjct: 8 LKVILLGDGGVGKSSLMNRY----VTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97
GQ++ + L +++ + +DR
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDR 92
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE------YKNISFTVWDVGGQDK 73
I+MVGL A GKT I KL +PT FNV YK+ F + D K
Sbjct: 41 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 100
Query: 74 IR 75
IR
Sbjct: 101 IR 102
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G V PTI + V+ + + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG V + + +D ++L + D +++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 132 N 132
+
Sbjct: 122 D 122
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE------YKNISFTVWDVGGQDK 73
I+MVGL A GKT I KL +PT FNV YK+ F + D K
Sbjct: 42 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 101
Query: 74 IR 75
IR
Sbjct: 102 IR 103
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE------YKNISFTVWDVGGQDK 73
I+MVGL A GKT I KL +PT FNV YK+ F + D K
Sbjct: 42 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 101
Query: 74 IR 75
IR
Sbjct: 102 IR 103
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------ISFTVWDV 68
+I+++G GK++++ + + + + F+ VE+ N ++ +WD
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQL----FHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 69 GGQDKIRPLWRHYFQNTQGLIF---VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125
GQ++ R L +++ + + V DS + + E + E ++
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 126 NKQDL 130
NK D+
Sbjct: 128 NKTDI 132
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 60 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVD 93
N++ +WD GGQD + H FQ Q LI V D
Sbjct: 54 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFD 92
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWD-----VGGQDKIRPLWRHYF-----QNTQGLIFV 91
++ T I E + Y + T+ GQ ++ LW F Q L+
Sbjct: 46 VIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTR 105
Query: 92 VDSNDRDRVVEARDELHRMLNED 114
D DR+R + ARD L +L+ +
Sbjct: 106 ADMEDRERFLNARDTLRALLDNN 128
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------ISFTVWDV 68
+++++G GK++++ + + T + F+ VE+ N ++ +WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQL----FHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 69 GGQDKIRPLWRHYFQNTQG--LIFVVDSN 95
GQ++ R L +++ + L F VD +
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDS 92
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------ISFTVWDV 68
+++++G GK++++ + + T + F+ VE+ N ++ +WD
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQL----FHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 69 GGQDKIRPLWRHYFQNTQG--LIFVVDSN 95
GQ++ R L +++ + L F VD +
Sbjct: 66 AGQERFRSLRTPFYRGSDCCLLTFSVDDS 94
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 71
+E +++++G GK+ + + G V PTI + V+ + + D G
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131
++ + Y +N QG V + + +D ++L + D +++ NK DL
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 123
Query: 132 N 132
+
Sbjct: 124 D 124
>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 307
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 60 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVD 93
N + +WD GGQD + H FQ Q LI V D
Sbjct: 51 NXTLNLWDCGGQDVFXENYFTKQKDHIFQXVQVLIHVFD 89
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 42 IVTTIPTIGFNVETVEYKNISFTVWD-----VGGQDKIRPLWRHYF-----QNTQGLIFV 91
++ T I E + Y + T+ GQ ++ LW F Q L+
Sbjct: 46 VIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTR 105
Query: 92 VDSNDRDRVVEARDELHRMLNED 114
D DR+R + ARD L +L+ +
Sbjct: 106 ADMEDRERFLNARDTLRALLDNN 128
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWD 67
+ GL AGKTTI + L+ + IP + + V + +N+ F+ D
Sbjct: 27 LTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGD 75
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 107 LHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ---STCATS 162
L + LN+ E++ L + A + IT+ G + L Q HWY + S ATS
Sbjct: 149 LEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFAATS 208
Query: 163 GEGLYEGLDWLSNN 176
G L+N
Sbjct: 209 SSGYVASAAALANE 222
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 20 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
ILMVG++ GKTT + KL + G+ V F VE VW G ++ I
Sbjct: 102 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE----QLQVW--GQRNNI 155
Query: 75 RPLWRHYFQNTQGLIF 90
+ +H ++ +IF
Sbjct: 156 PVIAQHTGADSASVIF 171
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
K ILMVG++ GKTT + KL + G+ V F VE VW
Sbjct: 95 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE----QLQVW-- 148
Query: 69 GGQDKIRPLWRHYFQNTQGLIF 90
G ++ I + +H ++ +IF
Sbjct: 149 GQRNNIPVIAQHTGADSASVIF 170
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 14 AKKEMRILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
K ILMVG++ GKTT + KL + G+ V F VE VW
Sbjct: 90 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE----QLQVW-- 143
Query: 69 GGQDKIRPLWRHYFQNTQGLIF 90
G ++ I + +H ++ +IF
Sbjct: 144 GQRNNIPVIAQHTGADSASVIF 165
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124
+ D GQ++ + Y + G + V NDR E ++L + D +++
Sbjct: 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120
Query: 125 ANKQDL 130
NK DL
Sbjct: 121 GNKADL 126
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVL 121
+ D GQ++ + Y + +G + V DR + + + + ++ R+ + DE +
Sbjct: 57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF---PM 113
Query: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQ 150
++ NK DL + ++T + G RQ
Sbjct: 114 ILIGNKADLD---HQRQVTQEEGQQLARQ 139
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVL 121
+ D GGQ++ + Y + +G + V N+ + + + R+++ R+ + D D +
Sbjct: 55 ILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD---DVPM 111
Query: 122 LVFANKQDL 130
++ NK DL
Sbjct: 112 VLVGNKCDL 120
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 20 ILMVGLDAAGKTTILYKL-----KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
ILMVG++ GKTT + KL + G+ V F VE VW G ++ I
Sbjct: 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE----QLQVW--GQRNNI 349
Query: 75 RPLWRHYFQNTQGLIF 90
+ +H ++ +IF
Sbjct: 350 PVIAQHTGADSASVIF 365
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 100 VVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHS-LRQR 151
++ ARD+ ++ L+ EL+D + LL+FA + L +A+++ + LG HS +R+R
Sbjct: 228 LLAARDDNNQPLSLPELKDQILLLLFAGHETLTSALSSFCLL--LGQHSDIRER 279
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVL 121
+ D GQ++ + Y + +G + V N+ + + R+++ R+ + + D +
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE---DVPM 112
Query: 122 LVFANKQDLPN 132
++ NK DLP+
Sbjct: 113 VLVGNKSDLPS 123
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVL 121
+ D GQ++ + Y + +G + V N+ + + R+++ R+ + + D +
Sbjct: 56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE---DVPM 112
Query: 122 LVFANKQDLPN 132
++ NK DLP+
Sbjct: 113 VLVGNKSDLPS 123
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 19 RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVE-------TVEYKNISFTVWDV 68
++ +VG +GKTT+L +L K ++ T+G +V+ +++ VWD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 69 GGQDKIRPLWRHY 81
G+++ H+
Sbjct: 64 AGREEFYSTHPHF 76
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38
L +L + R+L+VG+ GK+TI+ KLK
Sbjct: 90 LLKKLSFDRLARVLIVGVPNTGKSTIINKLK 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,133,006
Number of Sequences: 62578
Number of extensions: 201958
Number of successful extensions: 1040
Number of sequences better than 100.0: 286
Number of HSP's better than 100.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 300
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)