Query 030187
Match_columns 181
No_of_seqs 120 out of 1824
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 4.7E-40 1E-44 228.0 19.4 181 1-181 1-181 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 3.9E-39 8.5E-44 223.6 19.0 180 1-180 1-180 (182)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 2E-38 4.3E-43 212.9 10.5 161 15-180 7-174 (205)
4 smart00177 ARF ARF-like small 100.0 6.9E-37 1.5E-41 211.3 18.5 170 9-178 5-174 (175)
5 cd04149 Arf6 Arf6 subfamily. 100.0 4.5E-37 9.8E-42 210.8 16.6 164 12-175 4-167 (168)
6 KOG0092 GTPase Rab5/YPT51 and 100.0 1.6E-37 3.5E-42 207.8 12.7 160 15-180 3-169 (200)
7 PF00025 Arf: ADP-ribosylation 100.0 1.7E-35 3.6E-40 204.1 21.2 173 5-177 1-175 (175)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 7.6E-37 1.7E-41 204.8 12.6 161 16-179 21-186 (221)
9 KOG0070 GTP-binding ADP-ribosy 100.0 3.6E-36 7.7E-41 200.7 15.5 180 1-180 1-180 (181)
10 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.1E-36 1.3E-40 203.5 17.1 158 18-175 1-158 (159)
11 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.7E-34 3.6E-39 199.2 18.5 171 5-175 3-173 (174)
12 cd04158 ARD1 ARD1 subfamily. 100.0 3E-34 6.5E-39 197.1 18.3 161 19-179 1-162 (169)
13 KOG0078 GTP-binding protein SE 100.0 7.5E-36 1.6E-40 203.1 9.9 164 13-180 8-176 (207)
14 cd04154 Arl2 Arl2 subfamily. 100.0 2.4E-34 5.1E-39 198.3 17.5 164 12-175 9-172 (173)
15 KOG0073 GTP-binding ADP-ribosy 100.0 4.7E-34 1E-38 186.1 15.9 175 6-180 5-180 (185)
16 KOG0098 GTPase Rab2, small G p 100.0 1.8E-35 3.9E-40 196.7 8.6 161 16-180 5-170 (216)
17 KOG0080 GTPase Rab18, small G 100.0 2.6E-35 5.6E-40 191.5 9.2 161 16-179 10-175 (209)
18 cd04120 Rab12 Rab12 subfamily. 100.0 1.8E-34 3.9E-39 202.6 13.8 158 18-179 1-164 (202)
19 smart00178 SAR Sar1p-like memb 100.0 2.4E-33 5.3E-38 195.0 18.5 173 5-177 4-184 (184)
20 cd04151 Arl1 Arl1 subfamily. 100.0 1.6E-33 3.5E-38 191.4 16.7 157 19-175 1-157 (158)
21 cd01875 RhoG RhoG subfamily. 100.0 1.6E-34 3.6E-39 202.0 11.9 163 16-179 2-178 (191)
22 cd04126 Rab20 Rab20 subfamily. 100.0 4.8E-34 1E-38 202.6 13.9 160 18-178 1-190 (220)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.4E-34 5.2E-39 198.0 11.7 161 17-180 2-166 (172)
24 cd04121 Rab40 Rab40 subfamily. 100.0 2.7E-34 5.9E-39 199.9 11.8 157 16-179 5-168 (189)
25 cd04157 Arl6 Arl6 subfamily. 100.0 3.9E-33 8.6E-38 190.1 16.8 157 19-175 1-161 (162)
26 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.5E-34 7.6E-39 198.4 11.3 164 15-180 3-182 (182)
27 KOG0071 GTP-binding ADP-ribosy 100.0 6.8E-33 1.5E-37 176.3 16.1 180 1-180 1-180 (180)
28 cd00879 Sar1 Sar1 subfamily. 100.0 1.1E-32 2.4E-37 192.7 18.6 172 6-177 7-190 (190)
29 cd04133 Rop_like Rop subfamily 100.0 3.4E-33 7.3E-38 192.5 15.3 160 18-179 2-174 (176)
30 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.1E-32 2.5E-37 188.9 16.9 157 19-175 1-166 (167)
31 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8.5E-33 1.8E-37 189.0 16.1 155 19-175 1-163 (164)
32 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-33 3.3E-38 195.4 12.5 161 16-181 3-180 (180)
33 cd04131 Rnd Rnd subfamily. Th 100.0 4.1E-33 9E-38 192.6 14.5 161 17-179 1-177 (178)
34 KOG0394 Ras-related GTPase [Ge 100.0 8.1E-34 1.7E-38 188.5 10.4 158 14-178 6-178 (210)
35 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.6E-32 3.4E-37 190.8 17.3 164 16-179 2-171 (183)
36 cd01874 Cdc42 Cdc42 subfamily. 100.0 4E-33 8.7E-38 192.4 13.4 158 18-176 2-173 (175)
37 PTZ00369 Ras-like protein; Pro 100.0 2.6E-33 5.7E-38 195.7 12.4 160 15-179 3-168 (189)
38 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3E-32 6.4E-37 185.1 17.0 157 19-175 1-157 (158)
39 cd04122 Rab14 Rab14 subfamily. 100.0 4.7E-33 1E-37 190.6 13.0 157 17-179 2-165 (166)
40 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.4E-32 7.3E-37 185.2 16.3 157 19-175 1-159 (160)
41 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.1E-33 6.7E-38 199.5 11.5 162 16-179 12-189 (232)
42 cd04136 Rap_like Rap-like subf 100.0 6.5E-33 1.4E-37 189.2 12.5 156 18-177 2-162 (163)
43 KOG0093 GTPase Rab3, small G p 100.0 2.5E-33 5.5E-38 179.7 9.0 161 16-180 20-185 (193)
44 cd04155 Arl3 Arl3 subfamily. 100.0 1.2E-31 2.7E-36 184.6 18.0 165 11-175 8-172 (173)
45 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.5E-33 9.7E-38 189.0 10.5 161 16-180 13-178 (222)
46 cd04175 Rap1 Rap1 subgroup. T 100.0 7.8E-33 1.7E-37 189.1 11.9 157 17-178 1-163 (164)
47 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.1E-32 1.3E-36 190.5 16.6 157 18-179 1-169 (201)
48 PLN03071 GTP-binding nuclear p 100.0 3E-32 6.6E-37 194.1 15.1 159 13-179 9-173 (219)
49 cd00877 Ran Ran (Ras-related n 100.0 9.5E-32 2.1E-36 184.1 16.7 155 18-179 1-160 (166)
50 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.2E-32 1.6E-36 187.2 14.9 159 18-179 1-167 (182)
51 KOG0086 GTPase Rab4, small G p 100.0 1.3E-32 2.8E-37 177.7 10.3 162 16-181 8-174 (214)
52 cd01865 Rab3 Rab3 subfamily. 100.0 3.3E-32 7.1E-37 186.3 12.9 157 18-180 2-165 (165)
53 cd04119 RJL RJL (RabJ-Like) su 100.0 3.2E-32 7E-37 186.4 12.8 157 18-179 1-168 (168)
54 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.1E-31 4.5E-36 182.5 16.3 157 19-175 1-166 (167)
55 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 7E-32 1.5E-36 191.6 14.3 163 17-180 1-178 (222)
56 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.8E-32 1.9E-36 183.2 14.1 156 17-177 1-161 (162)
57 cd01867 Rab8_Rab10_Rab13_like 100.0 5.2E-32 1.1E-36 185.6 13.0 159 16-180 2-167 (167)
58 cd04117 Rab15 Rab15 subfamily. 100.0 8.5E-32 1.8E-36 183.5 13.8 154 18-176 1-160 (161)
59 cd04176 Rap2 Rap2 subgroup. T 100.0 5.4E-32 1.2E-36 184.7 12.3 157 17-177 1-162 (163)
60 cd04134 Rho3 Rho3 subfamily. 100.0 4.7E-32 1E-36 189.3 12.2 159 18-178 1-174 (189)
61 cd04111 Rab39 Rab39 subfamily. 100.0 4.7E-32 1E-36 192.1 12.3 159 17-180 2-168 (211)
62 smart00173 RAS Ras subfamily o 100.0 5.6E-32 1.2E-36 184.8 12.2 157 18-179 1-163 (164)
63 cd01871 Rac1_like Rac1-like su 100.0 1.5E-31 3.2E-36 184.5 14.4 159 17-176 1-173 (174)
64 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.7E-32 1.9E-36 185.0 13.1 156 19-178 2-165 (170)
65 KOG0075 GTP-binding ADP-ribosy 100.0 1.4E-31 3.1E-36 171.6 13.0 171 7-178 11-182 (186)
66 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.7E-32 1.2E-36 184.7 11.9 156 17-177 2-163 (164)
67 cd04109 Rab28 Rab28 subfamily. 100.0 1.2E-31 2.5E-36 190.8 13.6 158 18-179 1-167 (215)
68 cd04144 Ras2 Ras2 subfamily. 100.0 5.1E-32 1.1E-36 189.3 11.1 156 19-179 1-164 (190)
69 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.3E-31 2.8E-36 183.4 12.7 158 17-180 2-166 (166)
70 KOG0095 GTPase Rab30, small G 100.0 2.8E-32 6.1E-37 175.5 7.7 158 17-178 7-169 (213)
71 cd04125 RabA_like RabA-like su 100.0 2.1E-31 4.5E-36 186.0 12.2 158 18-180 1-164 (188)
72 cd04159 Arl10_like Arl10-like 100.0 2.6E-30 5.7E-35 175.1 16.8 157 19-175 1-158 (159)
73 cd04110 Rab35 Rab35 subfamily. 100.0 4.3E-31 9.4E-36 185.9 13.4 157 16-179 5-168 (199)
74 cd04103 Centaurin_gamma Centau 100.0 5.3E-31 1.2E-35 178.9 12.9 154 18-177 1-158 (158)
75 cd04140 ARHI_like ARHI subfami 100.0 4.3E-31 9.3E-36 180.7 12.5 155 18-176 2-163 (165)
76 cd04112 Rab26 Rab26 subfamily. 100.0 2.8E-31 6.2E-36 185.7 11.8 157 18-180 1-165 (191)
77 cd04116 Rab9 Rab9 subfamily. 100.0 1.6E-30 3.5E-35 178.7 14.9 159 15-177 3-170 (170)
78 cd04132 Rho4_like Rho4-like su 100.0 2E-30 4.2E-35 180.9 15.1 156 18-179 1-168 (187)
79 cd01868 Rab11_like Rab11-like. 100.0 8.2E-31 1.8E-35 179.3 12.8 155 17-177 3-164 (165)
80 cd01864 Rab19 Rab19 subfamily. 100.0 3.3E-30 7.2E-35 176.3 15.7 157 16-177 2-165 (165)
81 smart00176 RAN Ran (Ras-relate 100.0 1.3E-30 2.9E-35 182.8 14.0 150 23-179 1-155 (200)
82 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.8E-31 1.5E-35 180.6 12.1 157 17-177 2-168 (170)
83 PLN03110 Rab GTPase; Provision 100.0 7.3E-31 1.6E-35 186.7 12.6 159 16-179 11-175 (216)
84 cd04106 Rab23_lke Rab23-like s 100.0 6.1E-31 1.3E-35 179.3 11.6 152 18-176 1-161 (162)
85 cd01892 Miro2 Miro2 subfamily. 100.0 7E-30 1.5E-34 175.4 16.9 155 15-179 2-167 (169)
86 cd04124 RabL2 RabL2 subfamily. 100.0 4.3E-30 9.3E-35 175.1 15.7 154 18-179 1-159 (161)
87 cd04113 Rab4 Rab4 subfamily. 100.0 9.6E-31 2.1E-35 178.2 12.3 154 18-177 1-161 (161)
88 cd01866 Rab2 Rab2 subfamily. 100.0 1.3E-30 2.9E-35 178.8 12.9 157 17-179 4-167 (168)
89 KOG0091 GTPase Rab39, small G 100.0 9.8E-32 2.1E-36 175.4 6.7 162 16-180 7-175 (213)
90 PLN03118 Rab family protein; P 100.0 9.5E-31 2.1E-35 185.7 12.4 161 14-179 11-178 (211)
91 cd01873 RhoBTB RhoBTB subfamil 100.0 8.4E-31 1.8E-35 183.3 11.9 156 17-176 2-194 (195)
92 cd04135 Tc10 TC10 subfamily. 100.0 2.2E-30 4.8E-35 178.6 13.5 159 18-177 1-173 (174)
93 PF00071 Ras: Ras family; Int 100.0 5.4E-31 1.2E-35 179.6 10.3 154 19-178 1-161 (162)
94 cd04177 RSR1 RSR1 subgroup. R 100.0 1.3E-30 2.9E-35 178.8 12.2 157 17-178 1-164 (168)
95 cd01860 Rab5_related Rab5-rela 100.0 1.3E-30 2.8E-35 177.9 11.9 155 17-177 1-162 (163)
96 cd01863 Rab18 Rab18 subfamily. 100.0 8.9E-30 1.9E-34 173.4 15.8 155 18-177 1-161 (161)
97 KOG0079 GTP-binding protein H- 100.0 1E-31 2.2E-36 172.5 5.5 156 18-178 9-169 (198)
98 cd04118 Rab24 Rab24 subfamily. 100.0 4.4E-30 9.5E-35 180.0 14.0 155 18-179 1-167 (193)
99 cd04143 Rhes_like Rhes_like su 100.0 1.1E-29 2.3E-34 183.5 16.0 156 18-177 1-170 (247)
100 smart00174 RHO Rho (Ras homolo 100.0 9.2E-30 2E-34 175.5 15.1 159 20-179 1-173 (174)
101 smart00175 RAB Rab subfamily o 100.0 3.7E-30 8.1E-35 175.6 13.0 157 18-180 1-164 (164)
102 PLN03108 Rab family protein; P 100.0 1.8E-30 3.9E-35 184.1 11.7 159 16-180 5-170 (210)
103 cd04142 RRP22 RRP22 subfamily. 100.0 1.6E-29 3.4E-34 177.5 16.2 160 18-180 1-176 (198)
104 cd01861 Rab6 Rab6 subfamily. 100.0 4.1E-30 8.9E-35 175.0 12.8 154 18-177 1-161 (161)
105 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.1E-30 1.1E-34 176.7 12.8 156 18-175 1-171 (173)
106 cd01893 Miro1 Miro1 subfamily. 100.0 8.3E-30 1.8E-34 174.5 13.3 158 18-179 1-165 (166)
107 KOG0081 GTPase Rab27, small G 100.0 3.3E-32 7.1E-37 176.9 1.1 161 18-181 10-184 (219)
108 cd04101 RabL4 RabL4 (Rab-like4 100.0 8.6E-30 1.9E-34 174.0 12.4 154 18-177 1-163 (164)
109 cd01862 Rab7 Rab7 subfamily. 100.0 3.8E-29 8.1E-34 172.0 15.6 159 18-180 1-169 (172)
110 cd04139 RalA_RalB RalA/RalB su 100.0 3.7E-29 8.1E-34 170.6 14.7 158 18-180 1-164 (164)
111 cd04148 RGK RGK subfamily. Th 100.0 1.4E-29 3.1E-34 180.6 13.1 154 18-178 1-163 (221)
112 cd04146 RERG_RasL11_like RERG/ 100.0 7.4E-30 1.6E-34 174.6 10.8 155 19-178 1-164 (165)
113 KOG0072 GTP-binding ADP-ribosy 100.0 7.5E-30 1.6E-34 163.2 9.9 180 1-180 1-181 (182)
114 KOG0088 GTPase Rab21, small G 100.0 1.8E-30 4E-35 168.7 6.5 162 14-179 10-176 (218)
115 cd01870 RhoA_like RhoA-like su 100.0 1.1E-28 2.3E-33 170.3 15.0 160 17-177 1-174 (175)
116 cd04123 Rab21 Rab21 subfamily. 100.0 5.4E-29 1.2E-33 169.4 12.8 154 18-177 1-161 (162)
117 cd00157 Rho Rho (Ras homology) 100.0 5.5E-29 1.2E-33 171.0 12.5 157 18-175 1-170 (171)
118 cd04147 Ras_dva Ras-dva subfam 100.0 2.5E-28 5.5E-33 171.7 14.6 156 19-178 1-163 (198)
119 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.8E-31 1E-35 166.9 -0.2 150 21-179 1-161 (192)
120 cd00154 Rab Rab family. Rab G 100.0 5.2E-28 1.1E-32 163.7 14.5 152 18-175 1-159 (159)
121 cd04137 RheB Rheb (Ras Homolog 100.0 1.5E-28 3.2E-33 170.4 11.2 157 18-179 2-164 (180)
122 cd04114 Rab30 Rab30 subfamily. 100.0 7.1E-28 1.5E-32 165.3 13.6 157 16-177 6-168 (169)
123 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-27 2.6E-32 166.8 14.5 161 17-178 1-173 (187)
124 cd00876 Ras Ras family. The R 100.0 3.6E-28 7.9E-33 165.0 11.5 154 19-177 1-160 (160)
125 PTZ00132 GTP-binding nuclear p 100.0 4.6E-27 9.9E-32 167.3 16.0 160 13-179 5-169 (215)
126 KOG0097 GTPase Rab14, small G 99.9 8.1E-28 1.8E-32 153.8 8.6 160 16-179 10-174 (215)
127 KOG0395 Ras-related GTPase [Ge 99.9 1.3E-27 2.8E-32 166.5 10.2 161 16-179 2-166 (196)
128 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.9E-26 4.1E-31 161.7 14.9 116 18-133 1-144 (202)
129 KOG0076 GTP-binding ADP-ribosy 99.9 1.4E-27 3E-32 157.4 7.0 177 3-179 3-188 (197)
130 cd01897 NOG NOG1 is a nucleola 99.9 6.9E-26 1.5E-30 155.2 15.6 153 18-177 1-167 (168)
131 cd01898 Obg Obg subfamily. Th 99.9 4.4E-26 9.6E-31 156.4 14.2 156 19-177 2-170 (170)
132 KOG0074 GTP-binding ADP-ribosy 99.9 2E-26 4.2E-31 147.2 11.3 164 14-177 14-178 (185)
133 cd01890 LepA LepA subfamily. 99.9 9.7E-26 2.1E-30 156.1 14.1 151 19-179 2-178 (179)
134 KOG0393 Ras-related small GTPa 99.9 3.5E-26 7.5E-31 156.5 9.4 163 15-178 2-179 (198)
135 cd04171 SelB SelB subfamily. 99.9 2.5E-25 5.5E-30 151.7 12.9 151 19-175 2-163 (164)
136 cd01878 HflX HflX subfamily. 99.9 4.7E-25 1E-29 155.8 14.0 153 15-177 39-204 (204)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 7.1E-25 1.5E-29 150.1 13.4 155 19-178 2-166 (168)
138 TIGR00231 small_GTP small GTP- 99.9 5.2E-24 1.1E-28 143.8 15.3 153 17-174 1-160 (161)
139 PRK15494 era GTPase Era; Provi 99.9 4.4E-24 9.5E-29 160.8 16.2 156 15-179 50-217 (339)
140 PRK04213 GTP-binding protein; 99.9 2.3E-25 4.9E-30 157.0 8.4 159 15-179 7-193 (201)
141 TIGR02528 EutP ethanolamine ut 99.9 5.4E-25 1.2E-29 146.9 9.6 134 19-174 2-141 (142)
142 cd00881 GTP_translation_factor 99.9 9.2E-24 2E-28 147.1 16.0 156 19-179 1-188 (189)
143 PRK12299 obgE GTPase CgtA; Rev 99.9 3E-24 6.5E-29 160.9 14.1 157 18-178 159-328 (335)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.8E-23 3.9E-28 141.4 16.0 143 18-177 2-156 (157)
145 PLN00023 GTP-binding protein; 99.9 3.5E-24 7.6E-29 157.5 13.0 122 12-133 16-166 (334)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 4.6E-24 1E-28 149.6 12.8 145 18-167 3-171 (194)
147 PRK03003 GTP-binding protein D 99.9 1.2E-23 2.6E-28 165.1 15.9 158 16-178 210-382 (472)
148 cd00882 Ras_like_GTPase Ras-li 99.9 2.9E-24 6.4E-29 143.8 10.6 149 22-175 1-157 (157)
149 cd01881 Obg_like The Obg-like 99.9 3.6E-24 7.9E-29 147.6 11.0 153 22-177 1-176 (176)
150 COG1100 GTPase SAR1 and relate 99.9 7.6E-24 1.6E-28 151.1 13.0 163 16-178 4-185 (219)
151 cd01894 EngA1 EngA1 subfamily. 99.9 1.6E-23 3.5E-28 141.7 13.7 145 21-177 1-157 (157)
152 cd01889 SelB_euk SelB subfamil 99.9 9E-24 2E-28 147.9 12.8 156 18-178 1-186 (192)
153 PRK03003 GTP-binding protein D 99.9 1.7E-23 3.7E-28 164.2 15.6 152 16-179 37-200 (472)
154 TIGR03156 GTP_HflX GTP-binding 99.9 1.6E-23 3.4E-28 158.1 14.5 151 16-177 188-351 (351)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.6E-23 1E-27 159.7 17.0 149 15-179 201-361 (442)
156 TIGR00436 era GTP-binding prot 99.9 2.2E-23 4.8E-28 153.0 14.4 151 19-179 2-165 (270)
157 TIGR02729 Obg_CgtA Obg family 99.9 2.3E-23 5E-28 156.0 14.3 156 18-177 158-328 (329)
158 PRK05291 trmE tRNA modificatio 99.9 3.4E-23 7.3E-28 161.2 15.3 146 15-178 213-370 (449)
159 cd01879 FeoB Ferrous iron tran 99.9 2.9E-23 6.4E-28 140.7 13.1 146 22-178 1-157 (158)
160 PTZ00099 rab6; Provisional 99.9 5.1E-24 1.1E-28 146.8 9.3 130 44-179 8-143 (176)
161 cd04105 SR_beta Signal recogni 99.9 2.2E-23 4.7E-28 146.9 12.0 157 19-175 2-202 (203)
162 KOG4252 GTP-binding protein [S 99.9 5.9E-26 1.3E-30 150.6 -1.0 154 16-179 19-182 (246)
163 cd01895 EngA2 EngA2 subfamily. 99.9 2.3E-22 4.9E-27 138.0 16.6 155 17-176 2-173 (174)
164 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-22 2.4E-27 158.5 16.1 158 16-178 171-344 (429)
165 PF02421 FeoB_N: Ferrous iron 99.9 5.1E-23 1.1E-27 137.5 11.4 141 18-173 1-156 (156)
166 cd04163 Era Era subfamily. Er 99.9 2.8E-22 6E-27 136.6 14.0 154 16-177 2-168 (168)
167 PRK15467 ethanolamine utilizat 99.9 5.4E-23 1.2E-27 139.5 9.9 141 19-178 3-147 (158)
168 PRK11058 GTPase HflX; Provisio 99.9 4.9E-22 1.1E-26 153.2 16.2 152 18-178 198-362 (426)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 1E-22 2.2E-27 143.6 10.9 157 18-179 1-200 (203)
170 PF00009 GTP_EFTU: Elongation 99.9 1.5E-22 3.2E-27 141.3 11.4 159 15-178 1-187 (188)
171 PF08477 Miro: Miro-like prote 99.9 4.4E-23 9.5E-28 133.7 7.8 109 19-129 1-119 (119)
172 PRK12296 obgE GTPase CgtA; Rev 99.9 5.9E-22 1.3E-26 154.0 15.1 157 17-178 159-340 (500)
173 TIGR01393 lepA GTP-binding pro 99.9 6.8E-22 1.5E-26 158.1 15.7 152 18-179 4-181 (595)
174 PRK00454 engB GTP-binding prot 99.9 1.9E-22 4.1E-27 141.5 11.1 162 12-179 19-195 (196)
175 TIGR00487 IF-2 translation ini 99.9 9.9E-22 2.1E-26 156.6 16.4 156 14-175 84-247 (587)
176 cd00880 Era_like Era (E. coli 99.9 1.2E-21 2.6E-26 132.3 14.5 151 22-177 1-163 (163)
177 PRK00093 GTP-binding protein D 99.9 6.1E-22 1.3E-26 154.5 14.3 147 18-176 2-160 (435)
178 PRK12297 obgE GTPase CgtA; Rev 99.9 1.5E-21 3.2E-26 149.9 16.1 152 19-178 160-327 (424)
179 TIGR03594 GTPase_EngA ribosome 99.9 5.8E-22 1.2E-26 154.4 14.1 148 19-178 1-160 (429)
180 PRK00093 GTP-binding protein D 99.9 4.2E-21 9E-26 149.8 17.4 158 15-177 171-343 (435)
181 PRK00089 era GTPase Era; Revie 99.9 1.6E-21 3.5E-26 144.8 14.0 155 16-178 4-171 (292)
182 PRK05306 infB translation init 99.9 2.9E-21 6.3E-26 157.4 16.4 156 14-175 287-449 (787)
183 PRK09518 bifunctional cytidyla 99.9 2.7E-21 5.8E-26 158.3 15.2 153 15-179 273-437 (712)
184 PRK09518 bifunctional cytidyla 99.9 2.8E-21 6E-26 158.2 14.6 159 16-179 449-622 (712)
185 PRK12317 elongation factor 1-a 99.9 2E-21 4.3E-26 151.0 13.0 154 14-169 3-196 (425)
186 TIGR03598 GTPase_YsxC ribosome 99.9 7.7E-22 1.7E-26 136.6 9.4 149 10-167 11-179 (179)
187 COG1160 Predicted GTPases [Gen 99.9 1.6E-21 3.5E-26 147.3 11.6 148 18-177 4-164 (444)
188 TIGR00475 selB selenocysteine- 99.9 2.6E-21 5.6E-26 154.7 12.7 155 18-178 1-166 (581)
189 TIGR00483 EF-1_alpha translati 99.9 1.7E-21 3.7E-26 151.4 11.0 153 14-168 4-197 (426)
190 CHL00189 infB translation init 99.9 7.1E-21 1.5E-25 154.0 14.5 157 14-176 241-408 (742)
191 COG2229 Predicted GTPase [Gene 99.9 1.5E-20 3.2E-25 125.8 13.2 157 13-176 6-176 (187)
192 PRK05433 GTP-binding protein L 99.9 2E-20 4.3E-25 149.9 16.4 154 16-179 6-185 (600)
193 PRK12298 obgE GTPase CgtA; Rev 99.9 1.8E-20 3.9E-25 143.1 14.0 159 19-179 161-334 (390)
194 COG1159 Era GTPase [General fu 99.9 1.2E-20 2.6E-25 135.7 11.5 157 15-179 4-173 (298)
195 cd01896 DRG The developmentall 99.8 9.4E-20 2E-24 130.9 15.5 149 19-177 2-225 (233)
196 TIGR01394 TypA_BipA GTP-bindin 99.8 2.8E-20 6.1E-25 148.6 13.8 156 19-179 3-192 (594)
197 TIGR03680 eif2g_arch translati 99.8 1.3E-20 2.9E-25 145.3 11.2 161 15-178 2-196 (406)
198 cd04168 TetM_like Tet(M)-like 99.8 1.1E-19 2.4E-24 130.7 14.9 155 19-178 1-235 (237)
199 COG0486 ThdF Predicted GTPase 99.8 1.4E-19 3.1E-24 137.2 15.5 150 15-178 215-376 (454)
200 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.4E-20 5.3E-25 132.0 10.7 146 19-168 1-184 (208)
201 TIGR00437 feoB ferrous iron tr 99.8 3E-20 6.5E-25 148.7 12.4 139 24-177 1-154 (591)
202 KOG1673 Ras GTPases [General f 99.8 1.3E-20 2.9E-25 122.4 8.1 164 13-178 16-186 (205)
203 TIGR00491 aIF-2 translation in 99.8 9.4E-20 2E-24 145.1 14.8 152 16-175 3-213 (590)
204 PRK10218 GTP-binding protein; 99.8 1.2E-19 2.5E-24 145.1 15.3 158 16-178 4-195 (607)
205 PRK09554 feoB ferrous iron tra 99.8 9.2E-20 2E-24 149.2 14.6 151 16-177 2-167 (772)
206 KOG0077 Vesicle coat complex C 99.8 9.4E-21 2E-25 124.4 6.9 163 15-177 18-192 (193)
207 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 3.5E-20 7.6E-25 124.2 9.6 156 16-178 9-169 (216)
208 cd01883 EF1_alpha Eukaryotic e 99.8 2.3E-20 5E-25 133.1 9.2 146 19-167 1-194 (219)
209 PRK04000 translation initiatio 99.8 7.8E-20 1.7E-24 141.1 12.5 159 14-178 6-201 (411)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 9E-20 1.9E-24 127.5 11.7 145 17-166 2-171 (195)
211 COG1160 Predicted GTPases [Gen 99.8 2.4E-19 5.2E-24 135.6 14.4 157 16-177 177-350 (444)
212 KOG3883 Ras family small GTPas 99.8 3.3E-19 7.2E-24 115.7 12.6 160 16-178 8-175 (198)
213 PF10662 PduV-EutP: Ethanolami 99.8 7E-20 1.5E-24 119.9 8.0 135 19-174 3-142 (143)
214 PRK04004 translation initiatio 99.8 4.8E-19 1E-23 141.5 14.3 154 14-175 3-215 (586)
215 cd04165 GTPBP1_like GTPBP1-lik 99.8 5.1E-19 1.1E-23 126.2 11.5 152 19-175 1-220 (224)
216 PRK10512 selenocysteinyl-tRNA- 99.8 4E-19 8.6E-24 142.7 12.2 156 18-178 1-166 (614)
217 cd01876 YihA_EngB The YihA (En 99.8 8.5E-19 1.8E-23 119.6 11.4 153 19-177 1-170 (170)
218 PRK12736 elongation factor Tu; 99.8 5.5E-19 1.2E-23 135.9 11.5 160 14-178 9-201 (394)
219 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 6.5E-19 1.4E-23 125.2 9.7 159 19-179 1-177 (232)
220 PRK12735 elongation factor Tu; 99.8 3.4E-18 7.3E-23 131.7 13.7 158 15-177 10-202 (396)
221 KOG0090 Signal recognition par 99.8 6.4E-18 1.4E-22 115.7 12.9 165 12-177 33-238 (238)
222 COG0370 FeoB Fe2+ transport sy 99.8 4.6E-18 9.9E-23 134.1 13.8 149 16-179 2-165 (653)
223 COG0218 Predicted GTPase [Gene 99.8 3.9E-18 8.5E-23 116.6 11.4 161 9-179 16-198 (200)
224 cd04170 EF-G_bact Elongation f 99.8 1E-17 2.2E-22 123.0 14.4 109 19-132 1-130 (268)
225 CHL00071 tufA elongation facto 99.8 2E-18 4.3E-23 133.5 11.0 147 14-165 9-180 (409)
226 PLN00043 elongation factor 1-a 99.8 1.9E-18 4E-23 134.4 10.8 150 14-168 4-203 (447)
227 TIGR00485 EF-Tu translation el 99.8 6.3E-18 1.4E-22 130.2 13.3 157 14-175 9-198 (394)
228 cd04167 Snu114p Snu114p subfam 99.8 1.1E-17 2.3E-22 119.0 13.3 108 19-131 2-136 (213)
229 PRK13351 elongation factor G; 99.8 1.1E-17 2.3E-22 137.1 14.6 115 14-133 5-140 (687)
230 PF09439 SRPRB: Signal recogni 99.8 6E-19 1.3E-23 120.5 6.1 123 17-140 3-134 (181)
231 PRK00741 prfC peptide chain re 99.8 3.1E-17 6.8E-22 129.7 16.6 114 15-133 8-146 (526)
232 cd04169 RF3 RF3 subfamily. Pe 99.8 1.1E-17 2.5E-22 122.2 13.0 122 18-144 3-152 (267)
233 KOG1707 Predicted Ras related/ 99.8 1.1E-18 2.4E-23 134.6 7.7 162 13-178 5-175 (625)
234 PLN03126 Elongation factor Tu; 99.8 1.1E-17 2.5E-22 130.7 13.3 146 14-164 78-248 (478)
235 COG1084 Predicted GTPase [Gene 99.8 2E-17 4.3E-22 120.4 12.4 154 16-176 167-334 (346)
236 PRK00049 elongation factor Tu; 99.8 1.2E-17 2.5E-22 128.7 11.9 158 15-177 10-202 (396)
237 KOG1489 Predicted GTP-binding 99.8 1.9E-17 4E-22 119.8 11.7 148 18-176 197-365 (366)
238 PTZ00141 elongation factor 1- 99.8 1.3E-17 2.9E-22 129.8 11.5 151 14-168 4-203 (446)
239 cd01886 EF-G Elongation factor 99.7 4.1E-17 8.8E-22 119.4 13.3 122 19-145 1-146 (270)
240 cd04104 p47_IIGP_like p47 (47- 99.7 1.6E-17 3.4E-22 116.7 10.6 156 17-179 1-185 (197)
241 KOG4423 GTP-binding protein-li 99.7 1.3E-19 2.9E-24 121.2 0.0 157 18-178 26-194 (229)
242 PRK05506 bifunctional sulfate 99.7 1.2E-17 2.5E-22 135.6 11.3 160 5-168 12-211 (632)
243 PRK05124 cysN sulfate adenylyl 99.7 7E-18 1.5E-22 132.2 9.3 152 13-169 23-216 (474)
244 TIGR02034 CysN sulfate adenyly 99.7 8.9E-18 1.9E-22 129.7 9.5 147 18-168 1-187 (406)
245 KOG1423 Ras-like GTPase ERA [C 99.7 3.6E-17 7.7E-22 117.8 11.8 159 14-178 69-271 (379)
246 KOG0462 Elongation factor-type 99.7 5.6E-17 1.2E-21 124.6 13.5 154 15-178 58-235 (650)
247 PLN03127 Elongation factor Tu; 99.7 8E-17 1.7E-21 125.3 13.6 160 14-178 58-252 (447)
248 COG5256 TEF1 Translation elong 99.7 9.1E-18 2E-22 125.4 7.8 153 14-168 4-201 (428)
249 TIGR00484 EF-G translation elo 99.7 2.6E-16 5.6E-21 128.8 16.9 114 15-133 8-142 (689)
250 TIGR00503 prfC peptide chain r 99.7 1.7E-16 3.6E-21 125.7 15.3 113 15-132 9-146 (527)
251 COG0532 InfB Translation initi 99.7 2.1E-16 4.5E-21 121.7 14.1 156 15-175 3-167 (509)
252 cd00066 G-alpha G protein alph 99.7 1E-16 2.3E-21 119.9 12.1 134 46-179 146-312 (317)
253 smart00275 G_alpha G protein a 99.7 1.2E-16 2.6E-21 120.5 12.2 133 47-179 170-335 (342)
254 cd01885 EF2 EF2 (for archaea a 99.7 1.3E-16 2.7E-21 113.5 10.9 108 19-131 2-138 (222)
255 COG2262 HflX GTPases [General 99.7 5.2E-16 1.1E-20 116.2 14.1 155 13-178 188-356 (411)
256 COG0481 LepA Membrane GTPase L 99.7 2.4E-16 5.3E-21 119.5 12.2 154 16-179 8-187 (603)
257 PTZ00327 eukaryotic translatio 99.7 1.8E-16 3.9E-21 123.3 11.2 163 13-178 30-233 (460)
258 PF01926 MMR_HSR1: 50S ribosom 99.7 9.1E-16 2E-20 98.9 12.4 103 19-127 1-116 (116)
259 cd01899 Ygr210 Ygr210 subfamil 99.7 8.8E-16 1.9E-20 114.5 13.1 76 20-95 1-110 (318)
260 COG1163 DRG Predicted GTPase [ 99.7 2.1E-15 4.6E-20 109.7 14.6 148 17-178 63-289 (365)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1E-15 2.2E-20 107.5 10.9 160 18-179 1-185 (196)
262 PRK12739 elongation factor G; 99.7 1.2E-15 2.6E-20 124.9 12.8 114 15-133 6-140 (691)
263 PRK12740 elongation factor G; 99.7 3.6E-15 7.7E-20 122.1 14.7 106 23-133 1-127 (668)
264 KOG1191 Mitochondrial GTPase [ 99.7 2.7E-15 5.8E-20 114.3 12.5 164 15-179 266-451 (531)
265 PRK00007 elongation factor G; 99.6 3.1E-15 6.7E-20 122.5 13.4 115 14-133 7-142 (693)
266 cd01850 CDC_Septin CDC/Septin. 99.6 4.1E-15 8.8E-20 109.3 10.9 113 16-133 3-158 (276)
267 COG0536 Obg Predicted GTPase [ 99.6 6.4E-15 1.4E-19 107.9 11.5 155 19-179 161-334 (369)
268 KOG1145 Mitochondrial translat 99.6 1E-14 2.2E-19 112.4 12.3 155 15-175 151-313 (683)
269 COG3596 Predicted GTPase [Gene 99.6 8.1E-15 1.7E-19 104.6 7.8 163 12-178 34-222 (296)
270 PRK13768 GTPase; Provisional 99.6 1.4E-14 3E-19 105.4 9.1 117 61-178 97-247 (253)
271 COG2895 CysN GTPases - Sulfate 99.6 1.6E-14 3.4E-19 106.2 8.4 146 14-166 3-191 (431)
272 KOG0082 G-protein alpha subuni 99.6 3.1E-14 6.6E-19 106.0 9.9 135 45-179 179-345 (354)
273 PRK09602 translation-associate 99.6 1.3E-13 2.9E-18 105.7 13.7 78 18-95 2-113 (396)
274 COG4917 EutP Ethanolamine util 99.6 9.7E-15 2.1E-19 92.0 6.0 137 19-175 3-143 (148)
275 PRK09866 hypothetical protein; 99.6 3.1E-13 6.7E-18 107.1 15.3 112 61-175 230-350 (741)
276 PF03029 ATP_bind_1: Conserved 99.5 2.1E-14 4.6E-19 103.2 7.1 112 62-177 92-236 (238)
277 PRK09435 membrane ATPase/prote 99.5 4.6E-14 1E-18 105.5 8.7 160 7-178 44-260 (332)
278 TIGR00490 aEF-2 translation el 99.5 7.3E-14 1.6E-18 114.9 10.2 112 16-132 18-152 (720)
279 PRK14845 translation initiatio 99.5 1.7E-13 3.7E-18 114.9 12.2 140 28-175 472-670 (1049)
280 TIGR00101 ureG urease accessor 99.5 4.7E-13 1E-17 93.9 12.5 106 60-180 91-198 (199)
281 KOG0458 Elongation factor 1 al 99.5 3.3E-13 7.3E-18 104.8 10.7 154 12-168 172-372 (603)
282 cd01853 Toc34_like Toc34-like 99.5 6.2E-13 1.4E-17 96.2 10.8 118 14-133 28-164 (249)
283 KOG1490 GTP-binding protein CR 99.5 1.1E-13 2.4E-18 105.8 6.9 163 14-178 165-341 (620)
284 COG1217 TypA Predicted membran 99.5 7.4E-13 1.6E-17 100.7 11.0 158 17-179 5-196 (603)
285 KOG1532 GTPase XAB1, interacts 99.5 4.6E-13 9.9E-18 95.6 9.3 164 12-178 14-264 (366)
286 cd01882 BMS1 Bms1. Bms1 is an 99.5 4.8E-13 1E-17 95.8 9.4 139 15-164 37-182 (225)
287 KOG3905 Dynein light intermedi 99.5 7.7E-13 1.7E-17 96.6 10.4 169 6-178 35-290 (473)
288 PF04548 AIG1: AIG1 family; I 99.5 1.3E-13 2.8E-18 97.8 6.2 159 18-178 1-186 (212)
289 PF00503 G-alpha: G-protein al 99.4 6.6E-13 1.4E-17 102.4 9.9 131 47-177 221-389 (389)
290 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.9E-12 8.5E-17 93.7 13.2 117 14-132 35-167 (313)
291 PF03308 ArgK: ArgK protein; 99.4 9E-13 2E-17 94.0 8.5 150 15-176 27-228 (266)
292 COG3276 SelB Selenocysteine-sp 99.4 2.5E-12 5.4E-17 97.3 10.8 154 19-177 2-161 (447)
293 PLN00116 translation elongatio 99.4 1.3E-12 2.8E-17 109.2 10.1 112 15-131 17-163 (843)
294 TIGR00157 ribosome small subun 99.4 2.1E-12 4.6E-17 93.4 9.2 95 72-175 24-120 (245)
295 PTZ00416 elongation factor 2; 99.4 1.5E-12 3.3E-17 108.6 8.9 112 15-131 17-157 (836)
296 KOG3887 Predicted small GTPase 99.4 4.4E-12 9.5E-17 89.1 9.7 159 18-179 28-203 (347)
297 KOG1144 Translation initiation 99.4 2.4E-12 5.2E-17 102.6 8.8 154 16-177 474-686 (1064)
298 PF05783 DLIC: Dynein light in 99.4 1.1E-11 2.4E-16 96.7 12.4 161 16-178 24-264 (472)
299 PF00735 Septin: Septin; Inte 99.4 4.4E-12 9.5E-17 93.3 9.7 115 17-136 4-160 (281)
300 smart00010 small_GTPase Small 99.4 7.8E-13 1.7E-17 85.8 4.8 113 18-167 1-115 (124)
301 COG1703 ArgK Putative periplas 99.4 1.3E-11 2.8E-16 89.5 10.6 107 59-177 142-253 (323)
302 TIGR00073 hypB hydrogenase acc 99.3 9.7E-12 2.1E-16 88.0 9.8 153 10-177 15-206 (207)
303 TIGR00750 lao LAO/AO transport 99.3 2.7E-11 5.8E-16 90.4 12.2 106 60-177 126-237 (300)
304 PF05049 IIGP: Interferon-indu 99.3 1.1E-11 2.3E-16 93.7 9.5 159 13-178 31-218 (376)
305 PRK07560 elongation factor EF- 99.3 6.7E-12 1.5E-16 103.6 8.9 112 16-132 19-153 (731)
306 COG5257 GCD11 Translation init 99.3 6E-12 1.3E-16 91.8 7.0 160 15-179 8-203 (415)
307 KOG3886 GTP-binding protein [S 99.3 1E-11 2.2E-16 86.6 6.7 155 17-174 4-174 (295)
308 COG4108 PrfC Peptide chain rel 99.3 2.1E-11 4.6E-16 92.2 8.4 127 17-148 12-166 (528)
309 COG0480 FusA Translation elong 99.3 7.1E-11 1.5E-15 96.0 11.1 116 14-134 7-144 (697)
310 PF00350 Dynamin_N: Dynamin fa 99.3 9.4E-11 2E-15 80.2 10.1 63 62-128 102-168 (168)
311 KOG1707 Predicted Ras related/ 99.2 9.9E-10 2.1E-14 85.9 13.9 152 13-177 421-582 (625)
312 PRK10463 hydrogenase nickel in 99.2 2.7E-10 5.9E-15 83.5 10.1 151 12-177 99-288 (290)
313 KOG0461 Selenocysteine-specifi 99.2 1.3E-10 2.7E-15 85.9 8.3 157 16-178 6-193 (522)
314 COG0378 HypB Ni2+-binding GTPa 99.2 4.8E-10 1E-14 76.7 9.9 146 15-177 10-200 (202)
315 COG5019 CDC3 Septin family pro 99.2 4.3E-10 9.2E-15 83.7 10.3 116 15-135 21-179 (373)
316 COG0050 TufB GTPases - transla 99.2 4.1E-10 8.9E-15 81.5 9.5 160 14-177 9-200 (394)
317 TIGR02836 spore_IV_A stage IV 99.1 1E-09 2.3E-14 83.4 11.4 159 8-174 6-233 (492)
318 TIGR00993 3a0901s04IAP86 chlor 99.1 8.8E-10 1.9E-14 88.2 10.8 114 17-132 118-250 (763)
319 KOG2655 Septin family protein 99.1 1E-09 2.2E-14 82.2 10.1 114 16-134 20-174 (366)
320 smart00053 DYNc Dynamin, GTPas 99.1 6.5E-09 1.4E-13 74.7 12.3 69 61-133 125-207 (240)
321 PTZ00258 GTP-binding protein; 99.0 1.9E-09 4.1E-14 82.5 9.0 81 15-95 19-126 (390)
322 KOG0468 U5 snRNP-specific prot 99.0 9.7E-10 2.1E-14 87.2 7.4 111 16-131 127-262 (971)
323 KOG0705 GTPase-activating prot 99.0 4.3E-10 9.3E-15 87.3 5.0 155 16-178 29-189 (749)
324 KOG0459 Polypeptide release fa 99.0 7.7E-10 1.7E-14 83.1 5.8 159 12-170 74-278 (501)
325 cd01900 YchF YchF subfamily. 99.0 9E-10 2E-14 80.7 6.0 76 20-95 1-103 (274)
326 COG5258 GTPBP1 GTPase [General 99.0 8.6E-09 1.9E-13 77.3 10.7 156 14-174 114-335 (527)
327 PRK12289 GTPase RsgA; Reviewed 99.0 2.1E-09 4.6E-14 81.4 7.5 91 77-176 82-173 (352)
328 cd01859 MJ1464 MJ1464. This f 99.0 1.6E-09 3.4E-14 73.3 5.9 94 75-178 3-96 (156)
329 PRK09601 GTP-binding protein Y 99.0 2.7E-09 5.8E-14 80.8 7.5 78 18-95 3-107 (364)
330 cd04178 Nucleostemin_like Nucl 98.9 2.9E-09 6.2E-14 73.1 6.7 54 16-70 116-171 (172)
331 cd01855 YqeH YqeH. YqeH is an 98.9 1.6E-09 3.5E-14 75.7 5.4 97 74-178 24-125 (190)
332 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.9E-09 1.1E-13 71.0 7.4 55 16-70 101-156 (157)
333 PRK00098 GTPase RsgA; Reviewed 98.9 4.9E-09 1.1E-13 78.2 7.4 86 82-175 78-164 (298)
334 KOG0099 G protein subunit Galp 98.9 4.5E-09 9.7E-14 75.1 6.5 84 48-131 189-282 (379)
335 KOG1954 Endocytosis/signaling 98.9 1.2E-08 2.6E-13 76.2 9.0 115 16-134 57-227 (532)
336 KOG1486 GTP-binding protein DR 98.9 1.2E-07 2.7E-12 67.5 13.2 85 15-99 60-154 (364)
337 KOG0085 G protein subunit Galp 98.9 2.5E-09 5.3E-14 75.1 4.7 133 46-178 184-349 (359)
338 PRK12288 GTPase RsgA; Reviewed 98.9 1.6E-08 3.5E-13 76.7 8.7 89 82-176 118-206 (347)
339 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.5E-08 3.2E-13 75.3 8.2 88 79-175 73-161 (287)
340 KOG0410 Predicted GTP binding 98.8 7.6E-09 1.6E-13 76.0 5.9 148 16-178 177-341 (410)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.2E-08 2.6E-13 67.9 6.4 52 19-71 85-138 (141)
342 KOG0465 Mitochondrial elongati 98.8 1.6E-08 3.4E-13 79.7 7.9 111 16-131 38-169 (721)
343 KOG1547 Septin CDC10 and relat 98.8 2.8E-08 6.1E-13 70.2 7.4 114 16-134 45-200 (336)
344 cd01859 MJ1464 MJ1464. This f 98.8 3.9E-08 8.5E-13 66.5 7.6 55 16-70 100-155 (156)
345 KOG0460 Mitochondrial translat 98.8 3.1E-08 6.7E-13 73.3 7.3 144 14-161 51-218 (449)
346 KOG0467 Translation elongation 98.7 2.9E-08 6.2E-13 80.0 6.7 107 16-130 8-136 (887)
347 KOG2486 Predicted GTPase [Gene 98.7 1.2E-08 2.7E-13 73.4 4.0 157 13-175 132-313 (320)
348 cd01858 NGP_1 NGP-1. Autoanti 98.7 6.8E-08 1.5E-12 65.4 7.3 90 81-177 5-94 (157)
349 PRK09563 rbgA GTPase YlqF; Rev 98.7 5.1E-08 1.1E-12 72.4 7.1 57 15-72 119-177 (287)
350 cd01856 YlqF YlqF. Proteins o 98.7 4.6E-08 1E-12 67.2 6.2 56 15-71 113-170 (171)
351 TIGR03597 GTPase_YqeH ribosome 98.7 1.6E-08 3.4E-13 77.3 4.3 97 71-176 50-151 (360)
352 COG1161 Predicted GTPases [Gen 98.7 4.6E-08 1E-12 73.6 6.4 57 15-72 130-188 (322)
353 cd01849 YlqF_related_GTPase Yl 98.7 9.4E-08 2E-12 64.6 7.3 82 86-176 1-83 (155)
354 KOG0464 Elongation factor G [T 98.7 7.1E-09 1.5E-13 78.6 2.0 122 18-144 38-183 (753)
355 TIGR03596 GTPase_YlqF ribosome 98.7 4.6E-08 9.9E-13 72.3 6.1 56 15-71 116-173 (276)
356 cd01855 YqeH YqeH. YqeH is an 98.7 4.3E-08 9.3E-13 68.5 5.3 54 16-70 126-189 (190)
357 KOG1143 Predicted translation 98.7 2.5E-07 5.4E-12 69.5 9.4 148 17-169 167-379 (591)
358 cd01851 GBP Guanylate-binding 98.6 6.6E-07 1.4E-11 64.1 11.0 84 15-98 5-105 (224)
359 KOG0448 Mitofusin 1 GTPase, in 98.6 5.6E-07 1.2E-11 72.1 10.8 148 9-162 101-310 (749)
360 COG0012 Predicted GTPase, prob 98.6 2.3E-07 5E-12 69.7 7.3 79 17-95 2-108 (372)
361 cd01849 YlqF_related_GTPase Yl 98.6 2.2E-07 4.8E-12 62.8 6.7 53 15-70 98-154 (155)
362 KOG0466 Translation initiation 98.6 1.9E-08 4.1E-13 73.5 1.3 160 14-178 35-241 (466)
363 KOG1487 GTP-binding protein DR 98.6 1.3E-06 2.7E-11 62.7 10.2 149 18-177 60-280 (358)
364 cd01856 YlqF YlqF. Proteins o 98.6 7.7E-08 1.7E-12 66.1 4.1 91 75-177 10-100 (171)
365 COG5192 BMS1 GTP-binding prote 98.6 3E-07 6.5E-12 72.5 7.4 112 16-134 68-179 (1077)
366 PRK14974 cell division protein 98.5 9.3E-07 2E-11 66.8 9.7 139 16-171 139-323 (336)
367 PRK10416 signal recognition pa 98.5 7.5E-07 1.6E-11 67.0 9.2 138 16-170 113-302 (318)
368 TIGR00092 GTP-binding protein 98.5 5.8E-07 1.3E-11 68.3 8.2 78 18-95 3-108 (368)
369 TIGR03596 GTPase_YlqF ribosome 98.5 1.2E-07 2.6E-12 70.0 4.1 91 76-178 13-103 (276)
370 TIGR00064 ftsY signal recognit 98.5 1.1E-06 2.5E-11 64.6 8.8 139 16-171 71-261 (272)
371 KOG3859 Septins (P-loop GTPase 98.5 1.9E-07 4.1E-12 67.5 4.5 114 15-133 40-191 (406)
372 KOG0463 GTP-binding protein GP 98.5 5.6E-07 1.2E-11 67.7 7.0 149 18-171 134-351 (641)
373 PRK12288 GTPase RsgA; Reviewed 98.5 6.4E-07 1.4E-11 68.1 7.1 65 5-75 196-271 (347)
374 TIGR01425 SRP54_euk signal rec 98.4 1.1E-06 2.4E-11 68.2 8.2 111 16-133 99-254 (429)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 4.5E-07 9.7E-12 60.3 5.2 78 80-165 7-84 (141)
376 KOG1491 Predicted GTP-binding 98.4 6.2E-07 1.3E-11 66.5 6.2 80 16-95 19-125 (391)
377 COG1618 Predicted nucleotide k 98.4 8.4E-06 1.8E-10 54.5 10.5 25 15-39 3-27 (179)
378 PF03193 DUF258: Protein of un 98.4 6E-07 1.3E-11 60.5 5.3 24 18-41 36-59 (161)
379 PRK12289 GTPase RsgA; Reviewed 98.4 8.4E-07 1.8E-11 67.5 6.3 23 19-41 174-196 (352)
380 cd03112 CobW_like The function 98.4 8.1E-07 1.8E-11 60.2 5.4 21 20-40 3-23 (158)
381 TIGR00157 ribosome small subun 98.4 1.4E-06 3.1E-11 63.2 6.9 64 5-75 111-185 (245)
382 TIGR03348 VI_IcmF type VI secr 98.4 2E-06 4.3E-11 75.0 8.7 112 19-132 113-257 (1169)
383 KOG0447 Dynamin-like GTP bindi 98.3 9.2E-06 2E-10 64.1 10.9 94 62-158 413-521 (980)
384 PF00448 SRP54: SRP54-type pro 98.3 7E-07 1.5E-11 62.6 4.2 109 18-133 2-155 (196)
385 TIGR03597 GTPase_YqeH ribosome 98.3 2.6E-06 5.6E-11 65.3 6.7 56 17-73 154-216 (360)
386 PF09547 Spore_IV_A: Stage IV 98.3 1.8E-05 3.9E-10 60.8 10.8 23 17-39 17-39 (492)
387 PRK09563 rbgA GTPase YlqF; Rev 98.3 2E-06 4.3E-11 63.9 5.6 91 76-178 16-106 (287)
388 PRK13796 GTPase YqeH; Provisio 98.2 1.9E-06 4.2E-11 66.1 5.2 95 73-177 58-158 (365)
389 cd03114 ArgK-like The function 98.2 1E-05 2.2E-10 54.3 8.1 58 60-129 91-148 (148)
390 PRK13796 GTPase YqeH; Provisio 98.2 4.6E-06 1E-10 64.0 7.1 54 17-71 160-220 (365)
391 KOG1424 Predicted GTP-binding 98.2 2.1E-06 4.5E-11 66.9 4.7 54 17-71 314-369 (562)
392 PRK01889 GTPase RsgA; Reviewed 98.2 1.3E-05 2.9E-10 61.3 9.1 84 82-174 110-193 (356)
393 cd01854 YjeQ_engC YjeQ/EngC. 98.2 6.4E-06 1.4E-10 61.3 6.8 55 18-75 162-227 (287)
394 PRK14722 flhF flagellar biosyn 98.2 1.6E-05 3.5E-10 60.8 9.0 118 16-133 136-296 (374)
395 COG1162 Predicted GTPases [Gen 98.2 3.4E-06 7.3E-11 62.1 5.1 54 19-75 166-230 (301)
396 cd03115 SRP The signal recogni 98.1 3.3E-05 7.2E-10 53.0 9.4 67 60-133 82-154 (173)
397 PRK00098 GTPase RsgA; Reviewed 98.1 1.1E-05 2.3E-10 60.4 6.5 25 17-41 164-188 (298)
398 PRK00771 signal recognition pa 98.0 5.1E-05 1.1E-09 59.5 8.9 111 15-132 93-246 (437)
399 PRK11889 flhF flagellar biosyn 98.0 1.5E-05 3.3E-10 61.2 5.8 124 16-146 240-406 (436)
400 PF03266 NTPase_1: NTPase; In 98.0 4.6E-05 9.9E-10 52.2 7.0 22 19-40 1-22 (168)
401 COG0541 Ffh Signal recognition 97.9 2.7E-05 5.9E-10 59.9 6.2 111 14-131 97-252 (451)
402 COG1162 Predicted GTPases [Gen 97.9 3.9E-05 8.5E-10 56.6 6.7 92 79-176 74-165 (301)
403 PRK13695 putative NTPase; Prov 97.9 0.00033 7.2E-09 48.2 10.8 22 18-39 1-22 (174)
404 PRK12727 flagellar biosynthesi 97.9 5.3E-05 1.1E-09 60.3 7.5 111 16-133 349-499 (559)
405 KOG1534 Putative transcription 97.9 7.3E-05 1.6E-09 52.3 7.3 23 17-39 3-25 (273)
406 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.0001 2.2E-09 45.1 7.4 97 20-126 2-99 (99)
407 COG1419 FlhF Flagellar GTP-bin 97.9 0.00012 2.7E-09 56.1 9.0 110 17-133 203-353 (407)
408 PF02492 cobW: CobW/HypB/UreG, 97.9 1.7E-05 3.7E-10 54.9 4.0 69 60-134 84-157 (178)
409 PRK10867 signal recognition pa 97.9 0.0001 2.2E-09 57.7 8.4 78 60-144 183-267 (433)
410 TIGR00959 ffh signal recogniti 97.8 0.00012 2.6E-09 57.2 8.5 79 60-145 182-267 (428)
411 KOG1533 Predicted GTPase [Gene 97.8 2.7E-05 5.9E-10 55.2 4.0 68 61-132 97-177 (290)
412 PRK12724 flagellar biosynthesi 97.8 3.8E-05 8.3E-10 59.5 5.2 122 17-145 223-387 (432)
413 PRK14721 flhF flagellar biosyn 97.8 2E-05 4.4E-10 61.2 3.7 110 17-133 191-341 (420)
414 KOG2484 GTPase [General functi 97.8 1.5E-05 3.3E-10 60.4 2.6 56 15-71 250-307 (435)
415 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.6E-10 50.6 3.0 22 19-40 1-22 (121)
416 KOG2423 Nucleolar GTPase [Gene 97.8 1.2E-05 2.5E-10 61.1 1.7 92 5-99 295-389 (572)
417 PRK05703 flhF flagellar biosyn 97.8 0.00025 5.4E-09 55.6 9.0 109 18-133 222-372 (424)
418 PRK14723 flhF flagellar biosyn 97.7 0.00012 2.7E-09 60.7 7.4 111 18-133 186-338 (767)
419 PRK06731 flhF flagellar biosyn 97.7 8.7E-05 1.9E-09 54.6 5.7 123 16-145 74-239 (270)
420 COG0523 Putative GTPases (G3E 97.7 0.00044 9.4E-09 52.2 9.5 91 61-160 85-184 (323)
421 PRK12726 flagellar biosynthesi 97.7 9.8E-05 2.1E-09 56.6 5.9 124 16-146 205-371 (407)
422 PRK12723 flagellar biosynthesi 97.7 0.00063 1.4E-08 52.6 10.3 110 17-133 174-327 (388)
423 PRK08118 topology modulation p 97.7 3.3E-05 7.1E-10 52.9 2.9 22 19-40 3-24 (167)
424 PRK11537 putative GTP-binding 97.7 9.2E-05 2E-09 55.8 5.5 67 61-133 91-165 (318)
425 COG0563 Adk Adenylate kinase a 97.7 3.6E-05 7.7E-10 53.2 2.9 22 19-40 2-23 (178)
426 PF13671 AAA_33: AAA domain; P 97.7 3.9E-05 8.4E-10 50.8 2.8 20 20-39 2-21 (143)
427 PF06858 NOG1: Nucleolar GTP-b 97.7 9E-05 1.9E-09 40.7 3.6 45 83-129 12-58 (58)
428 PRK07261 topology modulation p 97.6 4.3E-05 9.4E-10 52.5 2.9 22 19-40 2-23 (171)
429 KOG0469 Elongation factor 2 [T 97.6 3E-05 6.5E-10 60.7 2.2 110 16-131 18-163 (842)
430 TIGR02475 CobW cobalamin biosy 97.6 0.0002 4.2E-09 54.6 6.3 21 20-40 7-27 (341)
431 cd02042 ParA ParA and ParB of 97.6 0.0003 6.5E-09 44.0 6.1 80 20-107 2-83 (104)
432 KOG0780 Signal recognition par 97.6 0.00019 4.1E-09 54.6 5.4 96 15-110 99-239 (483)
433 cd03111 CpaE_like This protein 97.6 0.00042 9.1E-09 43.7 6.4 102 20-127 2-106 (106)
434 KOG2485 Conserved ATP/GTP bind 97.5 9.9E-05 2.2E-09 54.5 3.8 56 16-71 142-206 (335)
435 PRK06995 flhF flagellar biosyn 97.5 0.00013 2.8E-09 57.8 4.5 23 17-39 256-278 (484)
436 cd02019 NK Nucleoside/nucleoti 97.5 8.6E-05 1.9E-09 43.0 2.6 21 20-40 2-22 (69)
437 COG1126 GlnQ ABC-type polar am 97.5 9.7E-05 2.1E-09 52.0 3.2 24 18-41 29-52 (240)
438 COG3523 IcmF Type VI protein s 97.5 0.001 2.2E-08 57.8 9.3 112 19-132 127-270 (1188)
439 COG0552 FtsY Signal recognitio 97.5 0.00031 6.8E-09 52.5 5.5 125 15-146 137-313 (340)
440 PF13521 AAA_28: AAA domain; P 97.5 7.5E-05 1.6E-09 50.8 2.1 22 19-40 1-22 (163)
441 COG1136 SalX ABC-type antimicr 97.5 9.6E-05 2.1E-09 52.7 2.7 23 18-40 32-54 (226)
442 PRK14530 adenylate kinase; Pro 97.5 0.00013 2.7E-09 52.1 3.3 23 17-39 3-25 (215)
443 PF04665 Pox_A32: Poxvirus A32 97.4 9.6E-05 2.1E-09 53.2 2.6 30 11-40 7-36 (241)
444 PF13555 AAA_29: P-loop contai 97.4 0.00015 3.3E-09 40.8 2.7 20 19-38 25-44 (62)
445 PF00005 ABC_tran: ABC transpo 97.4 0.00015 3.3E-09 47.6 3.1 25 17-41 11-35 (137)
446 PRK06217 hypothetical protein; 97.4 0.00015 3.3E-09 50.3 2.9 22 19-40 3-24 (183)
447 KOG0781 Signal recognition par 97.4 0.002 4.4E-08 50.4 9.1 146 7-157 368-565 (587)
448 cd00071 GMPK Guanosine monopho 97.4 0.00016 3.5E-09 47.8 2.7 21 20-40 2-22 (137)
449 COG1116 TauB ABC-type nitrate/ 97.4 0.00016 3.4E-09 51.9 2.8 22 19-40 31-52 (248)
450 cd02038 FleN-like FleN is a me 97.4 0.00083 1.8E-08 44.5 6.1 98 22-131 5-110 (139)
451 PRK08233 hypothetical protein; 97.3 0.00019 4.2E-09 49.5 3.2 24 17-40 3-26 (182)
452 PF05621 TniB: Bacterial TniB 97.3 0.0011 2.4E-08 49.2 7.1 37 5-41 49-85 (302)
453 TIGR02322 phosphon_PhnN phosph 97.3 0.00016 3.5E-09 49.9 2.7 22 19-40 3-24 (179)
454 PRK05480 uridine/cytidine kina 97.3 0.00019 4.1E-09 50.9 3.1 27 14-40 3-29 (209)
455 PRK10078 ribose 1,5-bisphospho 97.3 0.00019 4E-09 50.0 3.0 22 19-40 4-25 (186)
456 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.1E-09 46.5 2.8 21 20-40 1-21 (129)
457 smart00382 AAA ATPases associa 97.3 0.00022 4.8E-09 46.4 3.2 26 17-42 2-27 (148)
458 PF00004 AAA: ATPase family as 97.3 0.0002 4.3E-09 46.6 2.9 21 20-40 1-21 (132)
459 TIGR00554 panK_bact pantothena 97.3 0.00024 5.2E-09 52.8 3.6 31 8-38 53-83 (290)
460 KOG4273 Uncharacterized conser 97.3 0.0013 2.9E-08 47.3 7.1 111 17-132 4-123 (418)
461 PRK03839 putative kinase; Prov 97.3 0.0002 4.3E-09 49.5 2.9 22 19-40 2-23 (180)
462 PF03215 Rad17: Rad17 cell cyc 97.3 0.0052 1.1E-07 49.5 11.2 22 19-40 47-68 (519)
463 TIGR00235 udk uridine kinase. 97.3 0.0002 4.2E-09 50.8 2.9 25 15-39 4-28 (207)
464 cd00009 AAA The AAA+ (ATPases 97.3 0.00042 9.1E-09 45.5 4.3 35 7-41 9-43 (151)
465 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00025 5.4E-09 49.2 3.1 22 17-38 3-24 (188)
466 cd02023 UMPK Uridine monophosp 97.3 0.00021 4.5E-09 50.2 2.6 21 20-40 2-22 (198)
467 COG3840 ThiQ ABC-type thiamine 97.3 0.00024 5.2E-09 48.8 2.7 22 18-39 26-47 (231)
468 PRK13949 shikimate kinase; Pro 97.3 0.00024 5.2E-09 48.7 2.8 21 19-39 3-23 (169)
469 PRK14531 adenylate kinase; Pro 97.3 0.00027 5.8E-09 49.1 3.1 22 18-39 3-24 (183)
470 TIGR03263 guanyl_kin guanylate 97.2 0.00024 5.3E-09 49.0 2.8 22 19-40 3-24 (180)
471 cd03116 MobB Molybdenum is an 97.2 0.00026 5.6E-09 48.0 2.6 21 19-39 3-23 (159)
472 PHA00729 NTP-binding motif con 97.2 0.00057 1.2E-08 48.8 4.4 33 8-40 8-40 (226)
473 PRK14532 adenylate kinase; Pro 97.2 0.0003 6.5E-09 49.0 2.9 21 19-39 2-22 (188)
474 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00028 6.1E-09 48.8 2.7 20 20-39 2-21 (183)
475 PRK01889 GTPase RsgA; Reviewed 97.2 0.00088 1.9E-08 51.4 5.6 24 18-41 196-219 (356)
476 cd04178 Nucleostemin_like Nucl 97.2 0.00084 1.8E-08 46.1 4.9 53 86-143 1-55 (172)
477 PF13191 AAA_16: AAA ATPase do 97.2 0.00026 5.7E-09 48.8 2.5 27 13-39 20-46 (185)
478 cd01428 ADK Adenylate kinase ( 97.2 0.00028 6.1E-09 49.2 2.6 22 19-40 1-22 (194)
479 PRK14738 gmk guanylate kinase; 97.2 0.00037 8E-09 49.4 3.2 25 16-40 12-36 (206)
480 PTZ00088 adenylate kinase 1; P 97.2 0.00038 8.2E-09 50.1 3.2 23 17-39 6-28 (229)
481 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00034 7.3E-09 44.0 2.6 21 18-38 16-36 (107)
482 KOG3347 Predicted nucleotide k 97.2 0.00031 6.8E-09 46.5 2.5 25 15-39 5-29 (176)
483 cd01130 VirB11-like_ATPase Typ 97.2 0.0007 1.5E-08 47.1 4.5 33 7-40 16-48 (186)
484 cd02036 MinD Bacterial cell di 97.2 0.0083 1.8E-07 41.1 9.8 66 62-133 64-129 (179)
485 PLN02674 adenylate kinase 97.2 0.00042 9.1E-09 50.2 3.4 25 15-39 29-53 (244)
486 PRK00300 gmk guanylate kinase; 97.2 0.00041 8.9E-09 48.9 3.3 26 15-40 3-28 (205)
487 PF07728 AAA_5: AAA domain (dy 97.2 0.00039 8.4E-09 45.9 3.0 21 19-39 1-21 (139)
488 cd02025 PanK Pantothenate kina 97.2 0.00029 6.2E-09 50.4 2.5 20 20-39 2-21 (220)
489 PF03205 MobB: Molybdopterin g 97.2 0.00036 7.8E-09 46.3 2.7 22 19-40 2-23 (140)
490 TIGR01351 adk adenylate kinase 97.1 0.00033 7.1E-09 49.7 2.6 21 19-39 1-21 (210)
491 COG3638 ABC-type phosphate/pho 97.1 0.00035 7.7E-09 49.8 2.7 21 19-39 32-52 (258)
492 COG3839 MalK ABC-type sugar tr 97.1 0.00034 7.4E-09 52.9 2.8 22 19-40 31-52 (338)
493 cd01131 PilT Pilus retraction 97.1 0.00036 7.8E-09 49.1 2.6 21 20-40 4-24 (198)
494 COG1120 FepC ABC-type cobalami 97.1 0.00037 8.1E-09 50.7 2.7 22 18-39 29-50 (258)
495 PRK05439 pantothenate kinase; 97.1 0.00052 1.1E-08 51.4 3.6 32 8-39 77-108 (311)
496 PRK14737 gmk guanylate kinase; 97.1 0.00039 8.4E-09 48.4 2.7 24 17-40 4-27 (186)
497 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0004 8.7E-09 48.0 2.8 26 16-41 24-49 (177)
498 PRK10751 molybdopterin-guanine 97.1 0.00045 9.8E-09 47.4 3.0 25 16-40 5-29 (173)
499 cd03238 ABC_UvrA The excision 97.1 0.00044 9.6E-09 47.7 2.9 24 16-39 20-43 (176)
500 PRK06547 hypothetical protein; 97.1 0.00059 1.3E-08 46.9 3.4 28 13-40 11-38 (172)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=4.7e-40 Score=228.01 Aligned_cols=181 Identities=100% Similarity=1.472 Sum_probs=162.1
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||..++.+.++.+.++.+||+++|++|+|||||++++..+.+....||++.+...++..++.+++||+||+++++..|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88888888777777888999999999999999999999888777788999888888888899999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++|+|+|+++++++.....++.+++.....+++|+++++||+|+.+....+++.+.+++.....+.+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999988888877655568999999999999888777888888887666666777889999
Q ss_pred cCCCCHHHHHHHHHHHhhccC
Q 030187 161 TSGEGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~~ 181 (181)
++|+|++++|++|.+.+.+|+
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~~ 181 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANKA 181 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999998875
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3.9e-39 Score=223.65 Aligned_cols=180 Identities=78% Similarity=1.281 Sum_probs=160.4
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||+.+.+++++.+.+..+||+++|++|+|||||++++..+.+....||.+.++..++..++.+++||++|+++++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 89889999999888889999999999999999999998887777778888888778888899999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++|+|+|+++++++.....++.+++......++|+++++||.|+.+....+++...++....+...+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999988888876655567899999999999876666777777777666666778889999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
++|.|++++|++|.+.+.+|
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988765
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-38 Score=212.92 Aligned_cols=161 Identities=20% Similarity=0.389 Sum_probs=131.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++-|||+++|++|+|||+|+.|+..+.+. .+..|+++++.. ++.+.+++++|||+||++|+.+..+||++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45689999999999999999999999987 567788887643 3345689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceE-EEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWY-IQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 167 (181)
+|||+++.+||+++..|+.++-+... .+.|.++||||+|+.+..... +..+.++ ...+.+ |+|||||++.||+
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa----~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFA----DELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHH----HhcCCcceeecccCCccCHH
Confidence 99999999999999999988765543 678999999999997642111 1111121 122334 9999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
+.|..|...+..+
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=6.9e-37 Score=211.28 Aligned_cols=170 Identities=87% Similarity=1.374 Sum_probs=147.8
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
++..+.+..+||+++|++|+|||||++++..+.+....||++.+...+....+.+++||++|+++++..+..+++++|++
T Consensus 5 ~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i 84 (175)
T smart00177 5 FSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGL 84 (175)
T ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 34345566799999999999999999999877776777898888877777889999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+|+|+++++++++...++..++.....+++|+++|+||+|+.+....+++.+.++......+.+.++++||++|.|+++
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999999999999988765556799999999999987666677777777666666777888999999999999
Q ss_pred HHHHHHHHhh
Q 030187 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~l~~~l~ 178 (181)
+|++|.+.+.
T Consensus 165 ~~~~l~~~~~ 174 (175)
T smart00177 165 GLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=4.5e-37 Score=210.85 Aligned_cols=164 Identities=76% Similarity=1.285 Sum_probs=142.6
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.++++.++|+++|++|+|||||++++..+.+....||.+.++..+...++.+++||++|+++++..++.+++++|++++|
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 34567799999999999999999999988877777888888777777889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|++++.++.+...++.+.+.....+++|+++|+||+|+.+....+++.+..+........++++++||++|.|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999999998888765556799999999999987666677777666555555567899999999999999999
Q ss_pred HHHH
Q 030187 172 WLSN 175 (181)
Q Consensus 172 ~l~~ 175 (181)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9865
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-37 Score=207.80 Aligned_cols=160 Identities=21% Similarity=0.387 Sum_probs=135.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEEEEE--Ec--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--YK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~--~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|..++|||||+-|+..++|... .||++..+.+.. .. .++|.+|||+|+++|..+-++|||+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999874 889998776533 33 489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++.+||..+..|..++.++.. +++-+.++|||+|+.+. ...++. ...++..+..|+|+|||+|.||+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea-----~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA-----QAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH-----HHHHHhcCCEEEEEecccccCHH
Confidence 99999999999999999999877655 77888999999999872 222222 22233455689999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|..|.+.+...
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999988753
No 7
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=1.7e-35 Score=204.13 Aligned_cols=173 Identities=54% Similarity=1.000 Sum_probs=160.2
Q ss_pred HHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc
Q 030187 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
|+.++++... ++.++|+++|+.||||||+++++..+......||.+.+...+...++.+.+||.+|+..++..|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4567777776 788999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-CcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (181)
++|++|+|+|+++.+.+.+....+.+++......+.|+++++||+|..+....+++...+.+.... .+.+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999998777899999999999999988888898888877775 7789999999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
|+|+.|.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999875
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-37 Score=204.76 Aligned_cols=161 Identities=19% Similarity=0.383 Sum_probs=139.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+.+|++++|+.++||||||+|++.+.+. ++.+|+|+++.. +. ...+.+++|||+||++|+.+.++|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 4599999999999999999999999875 678899988743 33 345899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||+++..||+....|+.+........+..+++||||.|+.+. +++..+.+...++..+..|+++||+.|.||+++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 9999999999999999999999888777899999999999876 4444444444455556689999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
..|...+..
T Consensus 178 rrIaa~l~~ 186 (221)
T KOG0094|consen 178 RRIAAALPG 186 (221)
T ss_pred HHHHHhccC
Confidence 998877654
No 9
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-36 Score=200.70 Aligned_cols=180 Identities=83% Similarity=1.313 Sum_probs=174.2
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||..+++++...+.+...+|+++|.-++||||++++|..+++.+..||++++...+.+++++|++||.+|+++++..|+.
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|+++.+++|+|+|.++++.+.+....+..++........|+++++||.|++..-...++.+.+++..+..+++.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
.+|+|+.|.++++.+.+.++
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988765
No 10
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=6.1e-36 Score=203.54 Aligned_cols=158 Identities=93% Similarity=1.436 Sum_probs=138.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+||+++|++|+|||||++++..+.+....||++.+...+....+.+.+||++|++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888877778888888777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+++.....++.+++......++|+++++||+|+.+....+++...++...+....+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999999988877655567899999999999766555666666666555566778899999999999999999864
No 11
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=1.7e-34 Score=199.24 Aligned_cols=171 Identities=54% Similarity=0.983 Sum_probs=146.5
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
+..+.+....+..++|+++|++|+|||||++++..+.+....||++.++..+...++.+.+||+||++++...+..++++
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 82 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTN 82 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhc
Confidence 34455545445679999999999999999999998888777888888888888888999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|++++|+|+++++++.....++.+++......++|+++++||+|+......+++.+.++....+..+++++++||++|.
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 99999999999999999888888888776555679999999999997765666777777765555567789999999999
Q ss_pred CHHHHHHHHHH
Q 030187 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~v~~~~~~l~~ 175 (181)
|++++|++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 12
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=3e-34 Score=197.09 Aligned_cols=161 Identities=62% Similarity=1.073 Sum_probs=137.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
||+++|++|+|||||++++.+..+....||++.....++..++.+++||+||+.+++..+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988777788888888778888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++.+...|+.+++......+.|+++++||+|+.+....+++......... ....+.+++|||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999987655567899999999999766555655554433221 22345788999999999999999999877
Q ss_pred hc
Q 030187 178 AN 179 (181)
Q Consensus 178 ~~ 179 (181)
..
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 54
No 13
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-36 Score=203.15 Aligned_cols=164 Identities=23% Similarity=0.406 Sum_probs=135.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.-...+||+++|++++|||+++.++..+.+. ...+|+++.+.. +.. ..+.+++|||+||++|+.+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 3456789999999999999999999999876 556688877643 333 45889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||+++..||+++..|+..+ .....+..|.++||||+|+... +++..+.+...+...++.|+||||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I-~e~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNI-DEHASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHH-HhhCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 99999999999999999966554 5555578999999999998763 3333333434444456789999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
|+|..|.+.+.+|
T Consensus 164 eaF~~La~~i~~k 176 (207)
T KOG0078|consen 164 EAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988755
No 14
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=2.4e-34 Score=198.34 Aligned_cols=164 Identities=49% Similarity=0.899 Sum_probs=139.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.++...++|+++|++|+|||||++++.+..+....+|++.....+..+++.+.+||+||++.++..+..+++++|++++|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 34556799999999999999999999988776777888877777777889999999999999998899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|+++++++.....++..++......++|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 99999999999988888887655556899999999999987656566666665544445678899999999999999999
Q ss_pred HHHH
Q 030187 172 WLSN 175 (181)
Q Consensus 172 ~l~~ 175 (181)
++.+
T Consensus 169 ~l~~ 172 (173)
T cd04154 169 WLVD 172 (173)
T ss_pred HHhc
Confidence 9864
No 15
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=4.7e-34 Score=186.14 Aligned_cols=175 Identities=45% Similarity=0.828 Sum_probs=163.2
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
+-+.+...+++.++|+++|+.||||||++++|.+.......||.+++..+...+.+.+++||.+|+...++.|+.|+...
T Consensus 5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 44555566788999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGE 164 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (181)
|++|+|+|++++.++++....+.+.+......+.|++++.||.|+..+...+++...+++..+ +..+++.+.||+.+|+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 999999999999999999999999998877788999999999999988888999999988877 8889999999999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
++.+.++||.+.+++|
T Consensus 165 ~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMSR 180 (185)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 16
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=196.73 Aligned_cols=161 Identities=22% Similarity=0.367 Sum_probs=136.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE----EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+|++++|+.|+|||+|+.++..+.|.. ...|+++.+ ..++.+.+++++|||+|++.|++....||+.+-++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 46899999999999999999999998764 345777665 3455677999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++++++|..+..|+.++.+.. .++..+++++||+|+... +++.++.+..++++.+..|+++||+++.||+|+|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 999999999999999999987764 378999999999998764 3444444444444455678999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
..+...|.++
T Consensus 161 ~nta~~Iy~~ 170 (216)
T KOG0098|consen 161 INTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 17
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=191.51 Aligned_cols=161 Identities=24% Similarity=0.401 Sum_probs=140.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCc-cceeE----EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||+-++..+.+....|+ +++++ ..++...+++-+|||+|+++|+.+.++|++.|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 458999999999999999999999998877664 77665 3455567899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++.+++|..+..|..++-.....+++..++|+||+|..+ .+.+.++.++..++...+-|+|+||++.+||+.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999988876666667888999999999543 35667777777787788899999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
+.++++|.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999998864
No 18
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.8e-34 Score=202.61 Aligned_cols=158 Identities=19% Similarity=0.365 Sum_probs=123.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+.|+++|+.|+|||||++++..+.+.. ..+|++..+. .+..+ .+.+++||++|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 479999999999999999999988764 4567665543 34444 488999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|+++++||+.+..|+..+ .+...++.|+++|+||+|+...... .+....+... ..++.|++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHH
Confidence 999999999998877654 4434467999999999998643211 1111111110 1235799999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
++++.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99988764
No 19
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.4e-33 Score=195.02 Aligned_cols=173 Identities=35% Similarity=0.602 Sum_probs=146.4
Q ss_pred HHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc
Q 030187 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
|.++++-... ++.++|+++|++|+|||||++++.++.+....||.+.....+..+++++.+||+||+.+++..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 83 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP 83 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence 4566663322 778999999999999999999999987766677777777777778899999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-------CcceEEE
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQ 156 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 156 (181)
++|++++|+|+++++++.....++.+++......++|+++++||+|+......+++.+.+++.... .+...++
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999999999998888888776555689999999999998777777888777655422 2466799
Q ss_pred EecccCCCCHHHHHHHHHHHh
Q 030187 157 STCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+|||++|.|+++++++|.+++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EeecccCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 20
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=1.6e-33 Score=191.44 Aligned_cols=157 Identities=66% Similarity=1.132 Sum_probs=133.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
||+++|++++|||||++++..+.+....||++.+...++..++.+++||+||+++++..+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998887777778888877777788899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++.....++...++.....++|+++++||+|+.+.....++...++.......+.+++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88887788877766555567999999999999766555666666655444455678999999999999999999875
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.6e-34 Score=201.98 Aligned_cols=163 Identities=21% Similarity=0.300 Sum_probs=124.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
..+||+++|++|+|||||++++..+.+. ...||++..+. .++...+.+++|||+|+++|+.+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999998874 55778765543 2333458899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHh--------hhCCCcccCcc-eEEEEeccc
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITD--------KLGLHSLRQRH-WYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (181)
||+++++||+.+...|.+.+... .++.|+++|+||+|+.+.... +.+.. +.+...++..+ ++|++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999986444433332 257999999999999653211 11111 01111112223 579999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.||+++|+++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987764
No 22
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=4.8e-34 Score=202.58 Aligned_cols=160 Identities=18% Similarity=0.303 Sum_probs=129.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+||+++|.+|+|||||++++..+.+....+|++..+.......+.+.+||++|++++...+..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877766666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------------CCHh---HHHhhhCCC------c
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---------------------MNAA---EITDKLGLH------S 147 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~---------------------~~~~---~~~~~~~~~------~ 147 (181)
++|+.+..||..+... ..++.|+++|+||+|+.+. ...+ .+.+..... .
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999999887654 3357899999999998651 0111 111111100 0
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.....++|+||||++|.||+++|..+++.+.
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0011257999999999999999999998765
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.4e-34 Score=198.02 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=125.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|.+|+|||||++++..+.+. ...||.+..+. .+.. ..+.+++||++|+++++.++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999998876 45667664443 2333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++|+.+..|+..+......+++|+++|+||+|+.+..... ...+....+..+++|++|||++|.||+++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~---~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT---TEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC---HHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 999999999998876555443333679999999999986532111 11111112234568999999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
|++.+.++
T Consensus 159 l~~~~~~~ 166 (172)
T cd04141 159 LVREIRRK 166 (172)
T ss_pred HHHHHHHh
Confidence 99887754
No 24
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.7e-34 Score=199.93 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=124.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|+.|+|||||++++..+.+.. ..++++..+ ..+..+ .+.+++||++|+++|+.++..+++++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999887653 334555443 233333 4889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+.++.... ++.|+++|+||+|+.+. ...++.. .+. +..+++|++|||++|.||++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~-~~a----~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ-AYA----ERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH-HHH----HHcCCEEEEecCCCCCCHHH
Confidence 999999999999998888875542 68999999999998652 2222221 111 23445799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|++.+..
T Consensus 158 ~F~~l~~~i~~ 168 (189)
T cd04121 158 SFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987763
No 25
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=3.9e-33 Score=190.05 Aligned_cols=157 Identities=50% Similarity=0.856 Sum_probs=130.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 96 (181)
+|+++|++|+|||||++++.+.. .....||++.....+...++.+++||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999874 2356788887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
+.++.....++..+..... ..++|+++++||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999888888877766432 25799999999999987655556665555443344456799999999999999999987
Q ss_pred H
Q 030187 175 N 175 (181)
Q Consensus 175 ~ 175 (181)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 26
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.5e-34 Score=198.45 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=124.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+..+||+++|++|+|||||++++..+.+. ...||++..+. .+. ...+.+++|||+|+++|..+++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45689999999999999999999998875 45677765442 222 345889999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEec
Q 030187 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
|||+++++||+++ ..|+..+.. .. ++.|+++|+||+|+.+... ...+....+...++..++ +|+|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~-~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQE-FC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-HC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 455555433 22 5799999999999854210 001111122222233443 799999
Q ss_pred ccCCCC-HHHHHHHHHHHhhcc
Q 030187 160 ATSGEG-LYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~-v~~~~~~l~~~l~~~ 180 (181)
|++|.| |+++|..+++...+|
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~~ 182 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVNK 182 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC
Confidence 999998 999999999876543
No 27
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-33 Score=176.34 Aligned_cols=180 Identities=70% Similarity=1.199 Sum_probs=172.9
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||-.+++++.+.+..+.++|+.+|..++||||++.+|.-++.....||++++..++.++++.|++||.+|+.+.+..|.+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|+....++|+|+|+++++..++.+..+..++.+......|+++..||.|++.+-..+++.+.+++..++.+.+.+.++||
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999998899999999999999999999999999999989999999999999
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q 030187 161 TSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~~ 180 (181)
.+|+|+.|-|.+|.+.+..|
T Consensus 161 ~~gdgL~eglswlsnn~~~k 180 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKEK 180 (180)
T ss_pred ccchhHHHHHHHHHhhccCC
Confidence 99999999999999877653
No 28
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=1.1e-32 Score=192.67 Aligned_cols=172 Identities=35% Similarity=0.628 Sum_probs=143.1
Q ss_pred HHHHHhhh-ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC
Q 030187 6 TKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 6 ~~~~~~~~-~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
.+.++... ..+.++|+++|++|+|||||++++.+..+....||.+.....+...++.+.+||+||+++++..+..++++
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPE 86 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcc
Confidence 34444433 35679999999999999999999998887777778887777788888999999999999999888999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-----------cCcce
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHW 153 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~ 153 (181)
+|++++|+|+++.+++.....++.+++......+.|+++++||+|+......+++...+..... ....+
T Consensus 87 ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeE
Confidence 9999999999999999988899988887665567999999999999876666777666653221 22456
Q ss_pred EEEEecccCCCCHHHHHHHHHHHh
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
.+++|||++|.|++++|++|.+.+
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhhC
Confidence 799999999999999999998754
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.4e-33 Score=192.47 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||+.++..+.+. ...||++..+. .+. ...+++++|||+|+++|+.+++.+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999886 46777765442 222 245899999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCcccCcce-EEEEecccCCC
Q 030187 94 SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (181)
+++++||+.+. .|+..+... . ++.|+++||||+|+.+... ...+..+.+...++..+. +|+||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHY-A-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999984 666665433 2 5799999999999864310 001111111112222344 69999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 030187 165 GLYEGLDWLSNNIAN 179 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~ 179 (181)
||+++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987653
No 30
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=1.1e-32 Score=188.87 Aligned_cols=157 Identities=36% Similarity=0.620 Sum_probs=135.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
+|+++|++|+|||||++++.+.......||++.....+...++.+++||+||+++++..+..+++++|++++|+|+++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 58999999999999999999875456678888887778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc---cCcceEEEEecccCC------CCHHHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---RQRHWYIQSTCATSG------EGLYEG 169 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~~v~~~ 169 (181)
+++....++..+.......++|+++|+||+|+.+.....++.+.+..... ....+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 99999999998887655568999999999999887766777776665543 234578889999998 899999
Q ss_pred HHHHHH
Q 030187 170 LDWLSN 175 (181)
Q Consensus 170 ~~~l~~ 175 (181)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 31
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=8.5e-33 Score=188.97 Aligned_cols=155 Identities=40% Similarity=0.682 Sum_probs=132.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
.|+++|++|+|||||++++.++.+. ...||.+.....+...++++.+||++|+++++..+..+++++|++++|+|++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 4899999999999999999987654 456788887777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccC------CCCHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGL 170 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~v~~~~ 170 (181)
.++.....|+.++.... +++|+++|+||+|+.......++...++.... +..++++++|||++ ++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99999998888876543 68999999999999876666666555544433 45678899999998 99999999
Q ss_pred HHHHH
Q 030187 171 DWLSN 175 (181)
Q Consensus 171 ~~l~~ 175 (181)
+.+++
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98875
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.5e-33 Score=195.38 Aligned_cols=161 Identities=20% Similarity=0.412 Sum_probs=127.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE------------cCEEEEEEEcCCCCCccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY------------KNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
..+||+++|++|+|||||++++..+.+.. ..+|++.++.. +.. ..+.+.+||++|++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999887653 45666654432 221 2478999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|||++++++|..+..|+..+......+++|+++|+||+|+.+.. ..++. ..+. +..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEE
Confidence 999999999999999999999999988887665445678999999999986532 22222 1111 1123579999
Q ss_pred cccCCCCHHHHHHHHHHHhhccC
Q 030187 159 CATSGEGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~~~ 181 (181)
||++|.|++++|+.|.+.+.+++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~~ 180 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKRI 180 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999888764
No 33
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.1e-33 Score=192.65 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=121.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
++||+++|++|+|||||++++..+.+. ...||++..+. .+. ...+++++|||+|++++..+++.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999998875 45667655442 222 34588999999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEeccc
Q 030187 93 DSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCAT 161 (181)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (181)
|+++++||+.+ ..|+..+... . ++.|+++|+||+|+.+... ...+..+.+...++..++ +|+||||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~-~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF-C-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH-C-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999997 5565554432 2 5789999999999854200 001111112222223443 79999999
Q ss_pred CCCC-HHHHHHHHHHHhhc
Q 030187 162 SGEG-LYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~-v~~~~~~l~~~l~~ 179 (181)
+|.| |+++|..+++...+
T Consensus 159 ~~~~~v~~~F~~~~~~~~~ 177 (178)
T cd04131 159 TSEKSVRDIFHVATMACLN 177 (178)
T ss_pred cCCcCHHHHHHHHHHHHhc
Confidence 9995 99999999986554
No 34
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=8.1e-34 Score=188.51 Aligned_cols=158 Identities=16% Similarity=0.298 Sum_probs=130.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
++.-+||+++|++|+|||||+|++...+|. ....|++..+.+ ++...+.+++|||+|+++|+++.-.+++.+|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 455689999999999999999999999886 456688876643 333458899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCC---CCCeEEEEEeCCCCCCCC-------CHhHHHhhhCCCcccCcceEEEEe
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piivv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
++|||+.+++||+.+..|-.+++.+... ..-|+|++|||+|+.... ....++.. ..++||||+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s-------~gnipyfEt 158 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS-------KGNIPYFET 158 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh-------cCCceeEEe
Confidence 9999999999999999999999987543 346999999999986521 12223322 346799999
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
|||...||+++|+.+.+...
T Consensus 159 SAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred cccccccHHHHHHHHHHHHH
Confidence 99999999999999987654
No 35
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.6e-32 Score=190.78 Aligned_cols=164 Identities=50% Similarity=0.880 Sum_probs=132.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE-----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++....+....||.+........ ..+.+.+|||+|++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999988877667777665544332 45899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|+|+++++++.....++.++.......+.|+++++||+|+......+++......... ...+++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999899888888877766544467999999999998765444555444443222 223467889999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 36
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=4e-33 Score=192.42 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+. ...||++..+. .+..+ .+++++||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999998874 56677765543 33333 3889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-H--------HhhhCCCcccCcc-eEEEEecccCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-I--------TDKLGLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (181)
++++++|+.+..+|...+.... ++.|+++|+||+|+.+.....+ + ..+.+....+..+ +.|++|||++|
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999864444444322 5799999999999865421111 0 0000001111223 57999999999
Q ss_pred CCHHHHHHHHHHH
Q 030187 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~~v~~~~~~l~~~ 176 (181)
.|++++|+.+++.
T Consensus 161 ~~v~~~f~~~~~~ 173 (175)
T cd01874 161 KGLKNVFDEAILA 173 (175)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999875
No 37
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=195.66 Aligned_cols=160 Identities=18% Similarity=0.262 Sum_probs=127.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+..+||+++|++|+|||||++++.++.+. ...||.+..+. .++...+.+++|||+|++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 56799999999999999999999988765 44566655443 233345788999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+......++.|+++++||+|+.+.. ...+... . .+..+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988887765545688999999999986432 2112111 1 112235799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|++.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 38
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=3e-32 Score=185.15 Aligned_cols=157 Identities=69% Similarity=1.199 Sum_probs=138.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
||+++|++|+|||||++++.+.......+|.+.....+....+.+.+||+||++.+...+..+++.+|++++|||+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777788888888888888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++.....++..+.......+.|+++++||+|+......+++.+.++........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877665578999999999999877666677776665544556778999999999999999999875
No 39
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.7e-33 Score=190.62 Aligned_cols=157 Identities=20% Similarity=0.354 Sum_probs=124.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++..+.+... .+|++..+. .+.. ..+++.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999998887543 446665543 2333 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++|+.+..|+..+... ..++.|+++|+||+|+.... ..++... + ++..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQ-F----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999988776443 23578999999999986542 2222221 1 1223458999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 40
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=3.4e-32 Score=185.20 Aligned_cols=157 Identities=49% Similarity=0.918 Sum_probs=131.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+|+++|++|+|||||++++.++.+....||.+.....+.. ..+.+.+||++|+.++...+..++.++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888776665554 358999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.++.....++.+++......+.|+++++||+|+......+++...+..... ...++++++|||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 899999998888877655568999999999999766555666655543322 235678999999999999999999865
No 41
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.1e-33 Score=199.52 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=122.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EE--EcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
..+||+++|++|+|||||++++..+.+. ...||++..+.. +. ...+.+++|||+|+++|..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4589999999999999999999988876 456777655432 22 2458899999999999999999999999999999
Q ss_pred EECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEecc
Q 030187 92 VDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (181)
||++++++|+.. ..|+..+.... ++.|+++|+||+|+..... ...+....+...++..++ .|++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 56665554322 5789999999999864210 011111122222233445 6899999
Q ss_pred cCCC-CHHHHHHHHHHHhhc
Q 030187 161 TSGE-GLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~-~v~~~~~~l~~~l~~ 179 (181)
++|. ||+++|..+++.+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9998 899999999987654
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=6.5e-33 Score=189.16 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=121.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee-EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+.. ..||.+.. ...+..+ .+.+++||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999887653 34555422 2223333 4778899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++++++....|+..+......++.|+++++||+|+.+.... .+....+. +..+.+++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999998888776555568999999999998653211 11111111 112357999999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98865
No 43
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=179.72 Aligned_cols=161 Identities=20% Similarity=0.400 Sum_probs=130.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--E-EE-cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V-EY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~-~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+|++++|+..+|||||+.++.+..+. ....|+++.+.. + .. +.+++++|||+|+++++.+.-.+++.++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 3469999999999999999999998875 345677776432 2 22 34899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+||+++.+||..+..|..++.. ..+.+.|+|+++||||+.++ +-+..+.+...+++.++.|||+|||.+.||+++|
T Consensus 100 myDitNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred EEecCCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 9999999999999998877644 46689999999999998764 2222222333333445569999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+.++..|-++
T Consensus 176 e~lv~~Ic~k 185 (193)
T KOG0093|consen 176 ERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 44
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=1.2e-31 Score=184.64 Aligned_cols=165 Identities=50% Similarity=0.843 Sum_probs=141.8
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.....+.++|+++|++|+|||||++++.+..+....+|.+.+...+...+..+.+||++|+.++...+..+++++|++++
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 33445689999999999999999999999877777788888777777888999999999999988888888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+++..++.....++..........++|+++++||+|+.+....+++.+.++........++++++||++|+|++++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence 99999988898888888887776555679999999999998776677777777766555566778899999999999999
Q ss_pred HHHHH
Q 030187 171 DWLSN 175 (181)
Q Consensus 171 ~~l~~ 175 (181)
++|.+
T Consensus 168 ~~l~~ 172 (173)
T cd04155 168 NWVCK 172 (173)
T ss_pred HHHhc
Confidence 99975
No 45
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-33 Score=188.98 Aligned_cols=161 Identities=20% Similarity=0.373 Sum_probs=133.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-|||+++|++++|||-|+.|+..++|. +..+|+++.+.+ ++.+.++.++|||+||++|+++.+.|++.+.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 4589999999999999999999999986 667798888765 33456899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++...+|+++..|+.++..+ ..+++++++||||+|+.+. +.+..+.+...++..+..|+++||.++.||+++|
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999988887555 4479999999999999763 2222222222333344579999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+.++..|.++
T Consensus 169 ~~~l~~I~~~ 178 (222)
T KOG0087|consen 169 ERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=7.8e-33 Score=189.14 Aligned_cols=157 Identities=21% Similarity=0.303 Sum_probs=124.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++..+.+.. ..+|++..+. .+.. ..+.+++|||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3799999999999999999999877643 4456554332 2333 3577889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++|+.+..|+..+......++.|+++++||+|+..... .++. ..+. +..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999988887765557899999999999875321 1111 1111 1123579999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998775
No 47
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.1e-32 Score=190.50 Aligned_cols=157 Identities=22% Similarity=0.332 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE---cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||+++|.++.+. ...+|++.++. .+.. ..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999988765 35677775543 3333 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcc-eEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (181)
||++++++|+.+..|+..+.... ...++|+++|+||+|+.+ ....+++.+.... .+ ..++++||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE-----NGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH-----cCCceEEEEeCCCCCC
Confidence 99999999999988877664321 236789999999999963 2233333222111 12 3689999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|++|++.+.+
T Consensus 156 v~e~f~~l~~~l~~ 169 (201)
T cd04107 156 IEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 48
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3e-32 Score=194.09 Aligned_cols=159 Identities=23% Similarity=0.349 Sum_probs=128.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|+|||||++++..+.+. ...+|++..+..... ..+.+.+||++|++++..++..+++++|+
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 3467799999999999999999999888775 457788776554332 35899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+|+|||++++++|+.+..|+..+.... ++.|+++|+||+|+..... .+++ .+ .+..++.|++|||++|.|+
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCH
Confidence 999999999999999998887775432 5799999999999864322 2222 11 1224567999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 161 ~~~f~~l~~~~~~ 173 (219)
T PLN03071 161 EKPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988753
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=9.5e-32 Score=184.15 Aligned_cols=155 Identities=22% Similarity=0.381 Sum_probs=124.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++..+.+. ...+|.+........ ..+.+.+||++|++++...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999977754 456777766544332 3588999999999999998899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++++.+..|+..+.... .++|+++|+||+|+.......+..+ + .+...++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999988888776543 2799999999999874432222211 1 1234567999999999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
No 50
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=7.2e-32 Score=187.15 Aligned_cols=159 Identities=18% Similarity=0.297 Sum_probs=123.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++..+.+.. ..||++.++. .+..+ .+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988764 6778876653 34444 478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|++++++|+.+..|+..+..... ...| ++|+||+|+.... ..+.+. .......+..+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887755422 3567 6789999985321 111111 1111112233467999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 51
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=177.68 Aligned_cols=162 Identities=23% Similarity=0.355 Sum_probs=131.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-+|++++|+.|+|||+|++++..+++.+. ..|+++.+.. ++ .+.+++++|||+|+++|++....|++.|-+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 448999999999999999999999988644 4477776532 33 356999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||++++++|+.+..|+.+.-. ...+++-+++++||.|+... .++.-..+..+.+.....+.++||++|+||+|+|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 9999999999999999987533 34478889999999998765 3333333333334445578999999999999999
Q ss_pred HHHHHHhhccC
Q 030187 171 DWLSNNIANKA 181 (181)
Q Consensus 171 ~~l~~~l~~~~ 181 (181)
-...+.|..||
T Consensus 164 l~c~~tIl~kI 174 (214)
T KOG0086|consen 164 LKCARTILNKI 174 (214)
T ss_pred HHHHHHHHHHH
Confidence 99988887664
No 52
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.3e-32 Score=186.29 Aligned_cols=157 Identities=20% Similarity=0.391 Sum_probs=123.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++++.. ..+|.+.++. .+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 799999999999999999999988753 4566665443 2322 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++++.+..|+..+... .....|+++++||+|+.+... .++..+ +. +..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQ-LA----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHH-HH----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999998887776443 335789999999999865422 222211 11 1223478999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+++.+.+.+|
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999988765
No 53
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.2e-32 Score=186.39 Aligned_cols=157 Identities=25% Similarity=0.430 Sum_probs=123.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...+|++..+. .+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998865 45567665543 3333 4588999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
|++++++++.+..|+..+..... ..+.|+++|+||+|+.+. ...++... .. ...+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WA----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HH----HHcCCeEEEEECCCCCCH
Confidence 99999999999888887766543 257899999999998632 12222211 11 112357899999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 156 ~~l~~~l~~~l~~ 168 (168)
T cd04119 156 NEMFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
No 54
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=2.1e-31 Score=182.51 Aligned_cols=157 Identities=38% Similarity=0.730 Sum_probs=130.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+|+++|++|+|||||++++.... .....+|++.+...+..++..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 68999999999999999997532 12346677777777888889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--ccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+++++++.....++..+.......+.|+++++||+|+.......++...+.... ....+++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888999888888888766557899999999999987665555555444321 2335678999999999999999
Q ss_pred HHHHHH
Q 030187 170 LDWLSN 175 (181)
Q Consensus 170 ~~~l~~ 175 (181)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999875
No 55
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=7e-32 Score=191.65 Aligned_cols=163 Identities=16% Similarity=0.225 Sum_probs=124.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+|+|++|+|||||++++..+.+. ...||++..+. .+.. ..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999998876 46677765553 2333 4588999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCCcccCcc-eEEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (181)
|++++++|+.+..+|...+... .++.|+++|+||+|+.+... ... +..+.+...++..+ .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999977666555433 36799999999999865311 011 11111212222334 3799999999
Q ss_pred CCC-HHHHHHHHHHHhhcc
Q 030187 163 GEG-LYEGLDWLSNNIANK 180 (181)
Q Consensus 163 ~~~-v~~~~~~l~~~l~~~ 180 (181)
+.+ |+++|..++.+...|
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 885 999999998866543
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8.8e-32 Score=183.20 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=122.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++.++.+. ...+|.+..+. .+.. ..+.+.+||++|+++++.++..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999988764 34455553332 2223 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|+.+..|+..+.+.....+.|+++|+||+|+.+... ..+..... +..+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888887655556899999999999876332 22221111 11234789999999999999999
Q ss_pred HHHHHh
Q 030187 172 WLSNNI 177 (181)
Q Consensus 172 ~l~~~l 177 (181)
+|.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.2e-32 Score=185.63 Aligned_cols=159 Identities=22% Similarity=0.380 Sum_probs=125.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++.+..+.. ..+|.+..+. .+... .+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999888654 4666665442 33333 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+... ...+.|+++++||+|+.+.. ..++..... +..+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999887776553 33678999999999997532 222222211 12345789999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+++.+.+.+|
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999988754
No 58
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=8.5e-32 Score=183.54 Aligned_cols=154 Identities=21% Similarity=0.385 Sum_probs=121.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
++|+++|++|+|||||++++..+.+.. ..+|++.++. .+... .+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999988753 4677775543 34443 478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|+.+..|+..+... ...+.|+++|+||.|+...... .+....+. +..+.+|+++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999888766543 2357899999999998653211 11122121 12235789999999999999999
Q ss_pred HHHHH
Q 030187 172 WLSNN 176 (181)
Q Consensus 172 ~l~~~ 176 (181)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=5.4e-32 Score=184.75 Aligned_cols=157 Identities=17% Similarity=0.288 Sum_probs=121.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCccc-eeEEEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++..+.+... .+|.+ .....+.. ..+.+++||++|++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999887543 44443 11222333 3467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|..+..|+..+.......++|+++++||+|+....... .....+. +..+.+++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999988887765544689999999999986432111 1111111 11234789999999999999999
Q ss_pred HHHHHh
Q 030187 172 WLSNNI 177 (181)
Q Consensus 172 ~l~~~l 177 (181)
++++.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 60
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=4.7e-32 Score=189.32 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE-E--EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET-V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.||+++|++|+|||||++++..+.+.. ..||.+..+.. + +...+.+++||++|++++..++..+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999988764 45666554432 2 2234789999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH---------hhhCCCcccCc-ceEEEEecccC
Q 030187 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT---------DKLGLHSLRQR-HWYIQSTCATS 162 (181)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~Sa~~ 162 (181)
++++++|+.+.. |+..+. .. .++.|+++|+||+|+.+.....+.. ...+...++.. .++|++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~-~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIR-EH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHH-Hh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998875 544443 32 2579999999999997643222111 11111111112 25799999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|++++|++|++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
No 61
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=4.7e-32 Score=192.13 Aligned_cols=159 Identities=24% Similarity=0.491 Sum_probs=126.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE---cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.+||+++|++|+|||||++++..+.+.. ..+|++.++.. +.. ..+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999888754 35676655433 322 24789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+........+|+++|+||+|+..... .++. ..+. +..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999988877654445688999999999865321 1221 1111 12335799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+.|.+.+.++
T Consensus 157 ~f~~l~~~~~~~ 168 (211)
T cd04111 157 AFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999877643
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.98 E-value=5.6e-32 Score=184.83 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=121.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++.+..+.. ..+|....+ .... ...+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887653 334443222 1222 234789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
++++++++.+..|+..+.......+.|+++++||+|+.... ..+...... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988877665555678999999999986532 222221111 11235799999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
+|++.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987754
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=1.5e-31 Score=184.46 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=117.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||+.++..+.+. ...||++..+. .+.. ..+++.+|||+|++++...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999988775 44566543321 2222 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCcccCcc-eEEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDK--------LGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~~ 162 (181)
|++++++|+++...|...+.... ++.|+++|+||+|+.+... .+.+... .+....+..+ .+|++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999999764444443332 5799999999999864311 1111110 0000111122 4799999999
Q ss_pred CCCHHHHHHHHHHH
Q 030187 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~v~~~~~~l~~~ 176 (181)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999875
No 64
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.98 E-value=8.7e-32 Score=184.97 Aligned_cols=156 Identities=24% Similarity=0.336 Sum_probs=123.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||++++..+.+. ...||++..+. .+.. ..+.+++||++|++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999998875 45677766553 2333 34789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++++.....|+.++.+......+|+++|+||+|+.+.... ++..... ....+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999998888766544446789999999998643221 1111111 11223478999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
+.|.+.+.
T Consensus 158 ~~l~~~~~ 165 (170)
T cd04108 158 FRVAALTF 165 (170)
T ss_pred HHHHHHHH
Confidence 99988764
No 65
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.98 E-value=1.4e-31 Score=171.58 Aligned_cols=171 Identities=33% Similarity=0.651 Sum_probs=158.1
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
++.+..+ +....+.++|..++|||||+|.+..+++. ...||.+++...+..+.+.+.+||.||+++|+..|..|++.+
T Consensus 11 wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 11 WICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred HHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcC
Confidence 3344444 45599999999999999999999987765 568999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++||+|+++++.++.....+++++....+.++|++++|||.|++.+.....+...+++.....+.+..|.+|+++..|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
++.+.+||+++-.
T Consensus 170 id~~~~Wli~hsk 182 (186)
T KOG0075|consen 170 IDITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998654
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.98 E-value=5.7e-32 Score=184.67 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=122.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-E--EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.+||+++|++|+|||||++++.+..+.. ..+|....+. . ++...+.+++||+||++++...+..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999877543 3445443322 2 2223478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+++++++..+..|+..+.......+.|+++++||+|+..... .++. ..+. +..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG-QELA----RKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH-HHHH----HHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988877654456889999999999875421 1221 1111 1223478999999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
++|++.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 67
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.98 E-value=1.2e-31 Score=190.84 Aligned_cols=158 Identities=18% Similarity=0.287 Sum_probs=123.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE---cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||+++|.++.+. ...||.+.++.. +.. ..+.+++||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999988775 456777765532 333 248899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
||++++++|+.+..|+..+..... ..++|+++|+||+|+.+... ..+....+. +..+++++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~----~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA----QANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999888777655432 24578999999999864321 111111111 12235788999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|++.+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 68
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=5.1e-32 Score=189.34 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=120.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|++|+|||||+++|..+.+.. ..+|.+..+. .+.. ..+.+++|||+|++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999887753 4555553322 2222 346799999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++|..+..|+..+..... ..+.|+++|+||+|+..... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AAL----ARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999988877654322 35789999999999864322 1111 111 12234579999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
+++++.+.+
T Consensus 156 ~~l~~~l~~ 164 (190)
T cd04144 156 YTLVRALRQ 164 (190)
T ss_pred HHHHHHHHH
Confidence 999987764
No 69
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.98 E-value=1.3e-31 Score=183.40 Aligned_cols=158 Identities=21% Similarity=0.398 Sum_probs=123.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++.++.+. ...+|.+..+ ..+... .+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999988765 3345655443 233333 46899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++|..+..|+..+.... .++.|+++++||+|+..... .++... +. +..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999887765432 35789999999999865422 222221 11 123457999999999999999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|+.|.+.+.++
T Consensus 156 ~~~i~~~~~~~ 166 (166)
T cd01869 156 FMTMAREIKKR 166 (166)
T ss_pred HHHHHHHHHhC
Confidence 99999987653
No 70
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-32 Score=175.54 Aligned_cols=158 Identities=22% Similarity=0.360 Sum_probs=130.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EE--EEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
-+||+++|+.|+|||+|+.++..+-++ ....|+++.++ ++ +.+++++++|||+|+++|+++..+|++.|+++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 379999999999999999999888765 56678887764 33 34679999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
||++...+|..+.+|+.++..... .+.--|+|+||.|+.+. .++-...+....+.....|.++||++-+||+.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999988766533 46777999999998875 33434444444444566789999999999999999
Q ss_pred HHHHHhh
Q 030187 172 WLSNNIA 178 (181)
Q Consensus 172 ~l~~~l~ 178 (181)
.+.-.|.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 8876654
No 71
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.1e-31 Score=185.99 Aligned_cols=158 Identities=23% Similarity=0.379 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999988764 5667665442 2333 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999877765432 246899999999998743211 11111111 12244799999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
+|.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999987754
No 72
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=2.6e-30 Score=175.07 Aligned_cols=157 Identities=36% Similarity=0.680 Sum_probs=133.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
.|+++|++|+|||||++++.+..+. ...||.+.....+..+.+.+.+||+||+++++..+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3799999999999999999998765 456788887777777789999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+++.....++..+.......++|+++++||+|+.+.....++............+++++++|+++|.|+++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 899888888888877655568899999999998876555556555555544455678999999999999999999865
No 73
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=4.3e-31 Score=185.86 Aligned_cols=157 Identities=22% Similarity=0.406 Sum_probs=124.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++.+..+. ...+|++..+ ..+... .+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999988765 3566776554 334333 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+.... ...|+++|+||+|+..... .++... +. ...+++++++||++|.|+++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYK-FA----GQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCcCHHH
Confidence 999999999999998887765432 5789999999999875422 122221 11 12235799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|.+.+.+
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=5.3e-31 Score=178.90 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=113.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc-CccceeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+||+++|++|+|||||++++..+.+.... |+.+.....+..++ +.+.+||++|++. ..+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999888765543 33332223344444 7899999999975 3456889999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccC-cceEEEEecccCCCCHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
++++||+++..|+.++......+++|+++|+||+|+.... .+.+....+....+. .++.|++|||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999988888766555678999999999974311 011111111111111 24689999999999999999999
Q ss_pred HHHh
Q 030187 174 SNNI 177 (181)
Q Consensus 174 ~~~l 177 (181)
.+.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
No 75
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=4.3e-31 Score=180.74 Aligned_cols=155 Identities=15% Similarity=0.220 Sum_probs=117.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++.++.+. ...||.+..+.. .....+.+.+||++|++++...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999988865 334555533322 22245789999999999999988889999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++++..+..|+..+... ...++.|+++|+||+|+...... .+....+ ....++.++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence 99999999998887655332 12357899999999998652211 1111111 11234578999999999999999
Q ss_pred HHHHHH
Q 030187 171 DWLSNN 176 (181)
Q Consensus 171 ~~l~~~ 176 (181)
++|++.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999853
No 76
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.8e-31 Score=185.70 Aligned_cols=157 Identities=19% Similarity=0.428 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||++++..+.+. ...+|.+..+.. +.. ..+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988864 345666555432 333 347899999999999999889999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++++..|+..+... ...++|+++++||+|+.... ..++.. .+. ...+.+|+++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998887666543 33478999999999986421 222221 111 122357999999999999999
Q ss_pred HHHHHHHhhcc
Q 030187 170 LDWLSNNIANK 180 (181)
Q Consensus 170 ~~~l~~~l~~~ 180 (181)
|++|.+.+.++
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 77
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.6e-30 Score=178.66 Aligned_cols=159 Identities=14% Similarity=0.301 Sum_probs=123.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEE--EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||++++..+.+.. ..++++.... .+. ...+.+++||+||++++...+..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456899999999999999999999887653 4556665542 232 34578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+|||++++++++.+..|...+..... ..+.|+++++||+|+.... ..+++.+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999888877665322 2568999999999986432 22332221111 1113689999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++|+.+++.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 78
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2e-30 Score=180.88 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE---cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++.+. ...+|++..+. .+.. ..+.+++|||+|++++...++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999988875 34456554432 2222 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCcccCcce-EEEEecccCCCC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (181)
|++++++|+.+...|....... .++.|+++|+||+|+.... ...+..+ + ....+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-V----AKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-H----HHHcCCcEEEEccCCCCCC
Confidence 9999999999976443333322 2578999999999986532 1111111 1 111222 689999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|+.+++.+.+
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987764
No 79
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=8.2e-31 Score=179.25 Aligned_cols=155 Identities=21% Similarity=0.378 Sum_probs=122.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++.+..+. ...||.+.++. .+... .+.+++||+||++++...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988765 44566665443 33333 36899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++.+..|+..+.... ..++|+++|+||.|+.... ..++...... ..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999998887765543 2468999999999986532 2222222211 12457999999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
|+++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998875
No 80
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=3.3e-30 Score=176.30 Aligned_cols=157 Identities=22% Similarity=0.382 Sum_probs=120.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee--EEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++..+.+.. ..+|.+.. ...+...+ +.+++||+||++++...+..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999887654 34455433 33444444 689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++++.+..|+..+... ...++|+++|+||+|+.+.. ..++... +... .....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~---~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACT-LAEK---NGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHH-HHHH---cCCcEEEEEECCCCCCHHH
Confidence 99999999999998888777553 23578999999999987542 1122111 1110 0113688999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+|+.+.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998754
No 81
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=1.3e-30 Score=182.77 Aligned_cols=150 Identities=23% Similarity=0.328 Sum_probs=121.2
Q ss_pred EcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEE----EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 23 ~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+|++|+|||||++++..+.+. ...+|++.++.... ...+++.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988775 45778877665433 2458999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++|..+..|+.++.+.. +++|+++|+||+|+.......+.. ...+..++.|++|||++|.||+++|++|++.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-----TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999988777775532 579999999999986432211111 11223457899999999999999999999887
Q ss_pred hc
Q 030187 178 AN 179 (181)
Q Consensus 178 ~~ 179 (181)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 64
No 82
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=6.8e-31 Score=180.59 Aligned_cols=157 Identities=21% Similarity=0.399 Sum_probs=122.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCcc-ccccccccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~il 90 (181)
.+||+++|++|+|||||++++..+.+. ...++.+..+. .+... .+.+++||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999988765 34556654432 33333 4789999999999887 467888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccC---CCCH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS---GEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 166 (181)
|||++++++++.+..|...+.......++|+++|+||+|+...... .+....+. +..+++|+++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999998877766555567999999999998653221 12222222 12235799999999 9999
Q ss_pred HHHHHHHHHHh
Q 030187 167 YEGLDWLSNNI 177 (181)
Q Consensus 167 ~~~~~~l~~~l 177 (181)
+++|..+++.+
T Consensus 158 ~~~f~~l~~~~ 168 (170)
T cd04115 158 EAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 83
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=7.3e-31 Score=186.73 Aligned_cols=159 Identities=20% Similarity=0.355 Sum_probs=126.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||+++|.+..+. ...+|++.++. .+... .+.+++||++|++++...+..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 5589999999999999999999988765 45677776553 34333 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|||++++++|+.+..|+..+... ...+.|+++|+||+|+...... .+....+. ...+++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887766543 3357999999999998653221 12222222 123468999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|+.+.+.+.+
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 84
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=6.1e-31 Score=179.30 Aligned_cols=152 Identities=18% Similarity=0.347 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+||+++|++|+|||||++++.++.+. ...+|++.++.. +.. ..+++++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999988765 345676665532 222 35889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++++.+..|+..+... ..+.|+++|+||+|+..... .++..... +..+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 99999999999998887776432 25799999999999865322 22221111 11234789999999999999
Q ss_pred HHHHHHHH
Q 030187 169 GLDWLSNN 176 (181)
Q Consensus 169 ~~~~l~~~ 176 (181)
++++|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999765
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=7e-30 Score=175.36 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=122.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
++.+||+++|++|+|||||++++.++.+. ...||.+..+. .+.. ..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999998875 45677765432 3333 337889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++|+|++++++++.+..|+..+... .++|+++|+||+|+.+.. ..+++.+.++.. .++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999999888877654322 479999999999986432 223333333321 3578999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++|+.|.+.+.+
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999998764
No 86
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=4.3e-30 Score=175.14 Aligned_cols=154 Identities=16% Similarity=0.268 Sum_probs=119.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++..+.+.. ..++.+..... ++...+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999887653 33444443322 2234578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++.+++....|+..+... .++.|+++++||+|+..... .+. ..+ .+..+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~~-~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSVT-QKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhHH-HHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999988887776443 24789999999999853211 111 111 1122457899999999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
+.+.+.+
T Consensus 153 l~~~~~~ 159 (161)
T cd04124 153 AIKLAVS 159 (161)
T ss_pred HHHHHHh
Confidence 9987654
No 87
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=9.6e-31 Score=178.22 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=119.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.++.+. ...++.+..+. .+.. ..+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999988764 34455554433 2333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+++++++..+..|+..+... ..++.|+++++||.|+.... ..++...... ..++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998887765433 33689999999999986532 2222222111 123579999999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998764
No 88
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=1.3e-30 Score=178.83 Aligned_cols=157 Identities=19% Similarity=0.321 Sum_probs=123.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeE--EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++....+... .++.+.+. ..+.. ..+.+.+||++|++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998876533 34544433 22333 347899999999999999989999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||++++++++.+..|+.++.... .++.|+++++||.|+.... ..++..... ...+.+++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887765543 3679999999999987432 222222211 123457999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|..+.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 89
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=9.8e-32 Score=175.36 Aligned_cols=162 Identities=22% Similarity=0.418 Sum_probs=134.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EE---EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+++++++|++-+|||||++.+..+++.+ ..||++++++. ++ ...+++++|||+|+++|+++..+|++|.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 56899999999999999999999999874 57888887642 11 23589999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|||.++.+||+-+..|..+.......+.+ -+.+||+|+|+... .++..+.+...+...++.|+||||++|.||+|
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 999999999999999999998777665554 46889999999754 44444444444455667899999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
.|.-|.+.+..+
T Consensus 164 AF~mlaqeIf~~ 175 (213)
T KOG0091|consen 164 AFDMLAQEIFQA 175 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999988877643
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=9.5e-31 Score=185.72 Aligned_cols=161 Identities=23% Similarity=0.407 Sum_probs=125.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
....+||+++|++|+|||||+++|.+..+....++.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34568999999999999999999999887777777766543 33333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+|||++++++|..+..+|...+.. ....+.|+++|+||+|+...... ++.. .+ ....+++|+++||++|.|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM-AL----AKEHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HH----HHHcCCEEEEEeCCCCCCH
Confidence 999999999999998866655443 22356799999999998653221 2111 11 1123457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (211)
T PLN03118 166 EQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987753
No 91
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=8.4e-31 Score=183.34 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=112.1
Q ss_pred cceEEEEcCCCCChHHHHh-hhhcCCc------ccccCccce-eEE------------EEEEcCEEEEEEEcCCCCCccc
Q 030187 17 EMRILMVGLDAAGKTTILY-KLKLGEI------VTTIPTIGF-NVE------------TVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~-~l~~~~~------~~~~~t~~~-~~~------------~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
.+||+++|++|+|||||+. ++.++.+ ....||++. ..+ .++...+.+++|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 5554432 234677742 211 23334689999999999752
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHH
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEI 139 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------------~~~~ 139 (181)
....+++++|++++|||+++++||+.+.. |+..+ .... ++.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i-~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI-RHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHH-HHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668899999999999999999999975 55444 3322 5789999999999864210 1122
Q ss_pred HhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHH
Q 030187 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
....+...++..+++|+||||++|.||+++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222223334455689999999999999999999874
No 92
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=2.2e-30 Score=178.57 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+.. ..+|....+ ..+... .+.+.+||++|++++...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888753 344443222 223333 4668899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCcccCcc-eEEEEecccCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~Sa~~~ 163 (181)
++++++|+.....|.+.+... .++.|+++++||+|+.+......... ..+....+..+ .+|++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999976555555443 46899999999999865422111110 00001111122 26899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030187 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~v~~~~~~l~~~l 177 (181)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 93
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=5.4e-31 Score=179.61 Aligned_cols=154 Identities=26% Similarity=0.446 Sum_probs=123.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||++++.++.+. ...+|.+.+... +.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999998865 455676665543 333 35789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++++||..+..|+..+..... ...|+++++||.|+.+ ....++..+.. +..+.+|+++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988777655543 5689999999999876 22222221111 11224799999999999999999
Q ss_pred HHHHHhh
Q 030187 172 WLSNNIA 178 (181)
Q Consensus 172 ~l~~~l~ 178 (181)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
No 94
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.3e-30 Score=178.82 Aligned_cols=157 Identities=18% Similarity=0.274 Sum_probs=122.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.++|+++|++|+|||||++++.++.+. ...+|.+..+. .+.. ..+.+++||+||++++..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 378999999999999999999988865 34556554332 2223 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcc-eEEEEecccCCCCHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~ 169 (181)
|++++++++....|...+.......+.|+++++||.|+..... .++.. .+. +..+ .+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~-~~~----~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV-SLS----QQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH-HHH----HHcCCceEEEeeCCCCCCHHHH
Confidence 9999999999998877776544446899999999999865321 11111 111 1122 57999999999999999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
|+++++.+.
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998654
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.3e-30 Score=177.87 Aligned_cols=155 Identities=20% Similarity=0.408 Sum_probs=123.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988765 566666433 23333 457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+++++++.....|+..+..... +..|+++++||+|+.... ..++...... ..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999998888766543 679999999999987421 2222222111 12257999999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
+++|++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
No 96
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=8.9e-30 Score=173.42 Aligned_cols=155 Identities=25% Similarity=0.446 Sum_probs=122.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..++.+.++.. +.. ..+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999999887653 55666654432 333 3478999999999999998899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|++++++++....|+..+.......+.|+++++||+|+.... ..++... +. ...+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999998887776665555789999999999997433 2222221 21 12345799999999999999999
Q ss_pred HHHHHh
Q 030187 172 WLSNNI 177 (181)
Q Consensus 172 ~l~~~l 177 (181)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998764
No 97
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1e-31 Score=172.52 Aligned_cols=156 Identities=21% Similarity=0.358 Sum_probs=126.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
++.+|+|++|+|||+|+.++..+.|.. +..|+++++. +++ ++.+++++||++|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 578899999999999999999887763 4557776543 333 45699999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|+++.+||.+...|+.++-.+. +..|-++||||.|.++.-.. ..+.+..++.+.++.+||+||+.++|++..|..
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV---~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVV---DTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceee---ehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999886554 47899999999999875211 111122223345567999999999999999998
Q ss_pred HHHHhh
Q 030187 173 LSNNIA 178 (181)
Q Consensus 173 l~~~l~ 178 (181)
|.+++.
T Consensus 164 it~qvl 169 (198)
T KOG0079|consen 164 ITKQVL 169 (198)
T ss_pred HHHHHH
Confidence 887654
No 98
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=4.4e-30 Score=179.97 Aligned_cols=155 Identities=16% Similarity=0.292 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc--ccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+||+++|++|+|||||++++..+.+.. ..+|++..+. .+... .+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988753 5667765442 23333 47788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||++++++++....|+..+... .++.|+++|+||+|+..... .++..+ + ....+.+++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-F----ADEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-H----HHHcCCeEEEEeCCCCCC
Confidence 9999999999988877666443 24789999999999864321 111111 1 112345788999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|+.|.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 99
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.1e-29 Score=183.49 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=122.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc-eeEEEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~-~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++..+.+. ...+|++ .....+.. ..+.+++|||+|++.|...+..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999988876 4456664 22223333 34789999999999999888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 94 SNDRDRVVEARDELHRMLNED--------ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++++++|+.+..|+.++.... ...++|+++++||+|+.. ....+++.+..... .++.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence 999999999998888876531 235789999999999874 23334444333221 2457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030187 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~v~~~~~~l~~~l 177 (181)
.|++++|++|....
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
No 100
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=9.2e-30 Score=175.46 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=116.2
Q ss_pred EEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
|+++|++|+|||||++++.++.+.. ..++....+. .+.. ..+.+.+|||+|++++...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988753 3444443332 2222 3468999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHH--------HhhhCCCcccCcc-eEEEEecccCCCC
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEI--------TDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (181)
++++|+.+...|...+.... ++.|+++|+||+|+...... +.+ .........+..+ ..++++||++|.|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 99999999764444443322 58999999999998653210 000 0000001111223 2789999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|+.+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987754
No 101
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=3.7e-30 Score=175.63 Aligned_cols=157 Identities=21% Similarity=0.455 Sum_probs=123.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+..+ ..+...+ +.+++||+||++++...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988764 3345555443 2344433 78999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++++.+..|+..+..... +++|+++++||+|+.... ..+...+ +. +..+++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999887777655433 589999999999987532 2222222 21 1234579999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
+.|.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988764
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=184.05 Aligned_cols=159 Identities=19% Similarity=0.317 Sum_probs=124.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||++++....+.. ..+|++.++. .+.. ..+.+.+||++|++++...+..+++++|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999887643 4556665542 2333 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|+.+..|+..+.... .++.|+++++||+|+.+.. ..++..+.. +..+++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877664432 3579999999999987532 222222211 12345799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+++++.+.++
T Consensus 159 ~f~~l~~~~~~~ 170 (210)
T PLN03108 159 AFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 103
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.6e-29 Score=177.49 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=117.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEEc--CEEEEEEEcCCCCCcccc--------ccccccC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPL--------WRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~--------~~~~~~~ 84 (181)
+||+++|++|+|||||++++.++.+.. ..||.+.... .+... .+.+++|||||...+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999888753 4566553332 23333 378899999997654322 2244789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+|++++|||++++++|+.+..|+..+.... ..+++|+++|+||+|+.... ...+....+.. +..+++|++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCC
Confidence 999999999999999999998888776643 24679999999999996532 11111111110 1234679999999
Q ss_pred CCCCHHHHHHHHHHHhhcc
Q 030187 162 SGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~~ 180 (181)
+|.|++++|+.+++.+..+
T Consensus 158 ~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 158 YNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCHHHHHHHHHHHhhcc
Confidence 9999999999999877643
No 104
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=4.1e-30 Score=175.02 Aligned_cols=154 Identities=20% Similarity=0.371 Sum_probs=120.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...++.+.++. .+..+ .+.+++||+||++++...+..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988765 34555554443 33333 367999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++|+.+..|+..+..... .+.|+++++||+|+.+.. ..++...... ..+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988887765433 369999999999995432 2222222111 223578999999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998754
No 105
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=5.1e-30 Score=176.72 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=112.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+|++++|++|+|||||++++..+.+.. ..+|. .... .+.. ..+.+++||+||++++...++.+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999998877654 33443 2221 2222 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (181)
|++++++|+.+...|...+... .++.|+++++||+|+..... ...+.........+..+. .|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 9999999999865444433332 24789999999999864321 000111001111112233 799999999
Q ss_pred CCCHHHHHHHHHH
Q 030187 163 GEGLYEGLDWLSN 175 (181)
Q Consensus 163 ~~~v~~~~~~l~~ 175 (181)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=8.3e-30 Score=174.55 Aligned_cols=158 Identities=14% Similarity=0.200 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE-E--EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+||+++|++|+|||||++++..+.+....++..... . .+....+++++||++|++++...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999988765444322111 1 2233568899999999998888777788999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+++++++.+..+|.+.++... .+.|+++|+||+|+.+.... +++...... .. ....++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--Hh-cccEEEEeccccccCHHHHH
Confidence 999999998776666555433 47999999999999765432 111111000 00 01268899999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
+.+.+.+.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988764
No 107
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-32 Score=176.89 Aligned_cols=161 Identities=21% Similarity=0.429 Sum_probs=133.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE--EEE-----------cCEEEEEEEcCCCCCcccccccccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY-----------KNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~-----------~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
+|.+.+|++|+||||++.++..+++.. -.+|+++++.. +-+ ..+.+++|||+|+++|+++.-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 578899999999999999999998764 45677776532 211 2378999999999999999999999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.|-+++++||+++..||-+...|+.++..+...+++-+++++||+|+.+. ..+.+......+..+++||||+||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 99999999999999999999999999988888889999999999998764 223222333333456668999999999
Q ss_pred CCHHHHHHHHHHHhhccC
Q 030187 164 EGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~~ 181 (181)
.||++..+.|...+++|+
T Consensus 167 ~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRI 184 (219)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999888763
No 108
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=8.6e-30 Score=173.98 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccceeEEE--EE---EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVET--VE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+||+++|++|+|||||++++..+ .+. ...+|.+.++.. +. ...+++.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 343 455666655432 22 23489999999999999998999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+...... ....+. ...+++++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888877665432 5689999999999865432111 111111 11235789999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+|+.|.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
No 109
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=3.8e-29 Score=171.98 Aligned_cols=159 Identities=15% Similarity=0.268 Sum_probs=121.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+. ...+|++.++. .+.. ..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988754 23345554432 2333 3477889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
|++++++++....|...++.... ..++|+++|+||+|+..+ ...++........ ...+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence 99999999888877666554432 347899999999999742 2233322221111 12478999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++++++.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 110
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3.7e-29 Score=170.62 Aligned_cols=158 Identities=19% Similarity=0.334 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||++++....+.. ..++....+.. .+...+.+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999877643 33343332222 22245789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++++++.....|+..+.......++|+++|+||+|+... ....+... +. ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999988887655568999999999998762 12222111 11 11234789999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
.+.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (164)
T cd04139 156 DLVREIRQR 164 (164)
T ss_pred HHHHHHHhC
Confidence 999887653
No 111
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.4e-29 Score=180.58 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=115.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc--eeEEEEEE--cCEEEEEEEcCCCCCcccccccccc-CccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~il 90 (181)
+||+++|++|+|||||++++..+.+. ...++.+ .....+.. ....+.+||++|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877763 4445543 33333333 457899999999982 23344556 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++|.....|+..+.......++|+++|+||+|+..... .++. ..+ ....+++++++||++|.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RAC----AVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHH----HHHcCCeEEEecCCCCCCHHH
Confidence 999999999999998887776654446899999999999865421 1111 111 112345789999999999999
Q ss_pred HHHHHHHHhh
Q 030187 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~l~~~l~ 178 (181)
+|+++++.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 112
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=7.4e-30 Score=174.57 Aligned_cols=155 Identities=16% Similarity=0.222 Sum_probs=114.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE---EEEEEcCEEEEEEEcCCCCC-ccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||++++..+.+.. ..++....+ ..++...+.+++||+||+++ +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999877643 344442222 22333456899999999986 34556778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCC-CHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGE-GLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~ 169 (181)
++++++|+.+..|+..+..... ..++|+++|+||+|+.... ..++..+ + .+..+.+|+++||++|. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-L----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-H----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999887766655332 3579999999999985432 2222111 1 11123479999999994 99999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 113
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.5e-30 Score=163.17 Aligned_cols=180 Identities=56% Similarity=0.943 Sum_probs=168.2
Q ss_pred CcchHHHHHHhhhcc-CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 1 MGLSFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
||..++-++...+.. +..+|+++|.-|+||||+..++.-++..+..||++++..++..++.++++||.+|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 666777888887777 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.|+.+.|++|+|+|.+|.+........+..++++...++..++++.||.|........++...+++..++.+-+.+|++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999999999999999998888889999999999998888889999999998988899999999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|.+|+|+++.++||.+.+..|
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988764
No 114
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.8e-30 Score=168.67 Aligned_cols=162 Identities=20% Similarity=0.321 Sum_probs=128.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccce----eEEEEEEcCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~----~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+.-.||++++|...+|||||+-+++.++|... .+|+.. ....+.....++.+|||+|+++|..+-+-||+..+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 44569999999999999999999999887632 222222 2223334567899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
++|||+++++||+.+..|..++-.-.. ..+-+++|+||+|+... ..+....+...++..+..|+++||+++.||.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999887644322 45778999999998643 34444444445556667799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|+.|...+.+
T Consensus 166 lFe~Lt~~MiE 176 (218)
T KOG0088|consen 166 LFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHH
Confidence 99998876654
No 115
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.1e-28 Score=170.33 Aligned_cols=160 Identities=18% Similarity=0.296 Sum_probs=117.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
..||+++|++|+|||||++++..+.+.. ..||.+..+ ..+.. ..+.+.+|||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988753 455655433 22333 3478899999999999998888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCcccCc-ceEEEEecccC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLG--------LHSLRQR-HWYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~Sa~~ 162 (181)
|++++++|+.+...|...+... .++.|+++++||+|+....... ++..... ....+.. ..++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999998876555444432 2578999999999986532211 1110000 0000111 23789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
|.|++++|++|.+..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998753
No 116
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=5.4e-29 Score=169.42 Aligned_cols=154 Identities=21% Similarity=0.362 Sum_probs=118.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++....+.. ..++..... ..+.. ..+.+.+||++|++.+...++.+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887653 233333322 22332 3468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|++++++++....|+.++..... .++|+++++||+|+.... ..+++.+.. ...+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999887776655433 378999999999987532 222222211 1224568899999999999999
Q ss_pred HHHHHHh
Q 030187 171 DWLSNNI 177 (181)
Q Consensus 171 ~~l~~~l 177 (181)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=5.5e-29 Score=170.99 Aligned_cols=157 Identities=21% Similarity=0.288 Sum_probs=116.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-E--EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
+||+++|++|+|||||+++|.+..+. ...++...... . .....+.+++||+||++++.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988863 33444332222 1 22235789999999999998888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCcccCcce-EEEEecccCCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (181)
+++++++......|...+.... .+.|+++|+||+|+........ +............+. +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999888876666555433 4799999999999876543211 111111111112223 79999999999
Q ss_pred CHHHHHHHHHH
Q 030187 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 ~v~~~~~~l~~ 175 (181)
|+++++++|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 118
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.5e-28 Score=171.69 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=120.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-cCccc-eeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|++|+|||||++++..+.+... .+|.. .....+...+ +.+++||++|+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998876543 33432 2333344444 7899999999999998888999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++++++....|+..+.......++|+++++||+|+..... .....+.... ..+.+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHH
Confidence 99999999998888877765556899999999999865311 1122111111 1234688999999999999999
Q ss_pred HHHHHhh
Q 030187 172 WLSNNIA 178 (181)
Q Consensus 172 ~l~~~l~ 178 (181)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 119
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4.8e-31 Score=166.86 Aligned_cols=150 Identities=19% Similarity=0.430 Sum_probs=123.7
Q ss_pred EEEcCCCCChHHHHhhhhcCCcc--cccCccceeEEE----EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 21 LMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 21 ~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+++|++++|||+|+-++..+.+. .-.+|+++++.. +...++++++|||+|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999999887765 345688877643 334568999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
++..||++.+.|+.++.+... ....+.+++||+|+..+ ++.+.+.++++ +||+++||++|.||+..
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~--------ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG--------IPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHC--------CCceeccccccccHhHH
Confidence 999999999999988765422 45778999999999652 33444555444 46999999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
|-.|.+.+.+
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=5.2e-28 Score=163.70 Aligned_cols=152 Identities=23% Similarity=0.431 Sum_probs=120.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeEEEE--EE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+||+++|++|+|||||++++.+..+... .+|.+.++... .. ..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887654 56666655433 33 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP--NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+++++++.....|+..+..... ...|+++++||+|+. .....+++.+... ..+.+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99999999999987776665432 579999999999996 2223333333222 134679999999999999999
Q ss_pred HHHHH
Q 030187 171 DWLSN 175 (181)
Q Consensus 171 ~~l~~ 175 (181)
++|.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 98863
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=1.5e-28 Score=170.39 Aligned_cols=157 Identities=21% Similarity=0.308 Sum_probs=123.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee-EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.||+++|++|+|||||++++.+..+.. ..||.... ...+... .+.+++||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887653 44554432 2233333 4678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+++.++++.+..++..+++.....+.|+++++||+|+.... ...+... +. +..+.+++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887655678999999999986432 2112111 11 11234789999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987653
No 122
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=7.1e-28 Score=165.27 Aligned_cols=157 Identities=20% Similarity=0.349 Sum_probs=119.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++..+.+. ...+|++... ..+...+ +.+.+||++|++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999876654 3455555433 2344443 778999999999999988899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|||+++++++..+..|+..+... ...+.|+++++||+|+.+... ..+..+.+.. ....+++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----AQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEeeCCCCCCHHHH
Confidence 99999999998888776654332 224789999999999865322 1222222221 12247899999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
|+.|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998765
No 123
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=1.2e-27 Score=166.82 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=114.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
+.||+++|++|+|||||++++..+.+.. ..+|....+. .+.. ..+.+.+||++|++.+....+.+++++|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3689999999999999999998766543 3344433322 2222 3467899999999998887777889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-------hHHHhhhCCCcccCcc-eEEEEecccCCC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRQRH-WYIQSTCATSGE 164 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (181)
|++++++|+.+...|.+.+.... ++.|+++|+||+|+.+.... ..+.........+..+ .+|++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999999865555444332 46999999999998542110 0000000001111122 268999999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|++++|+.+.+.+.
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997654
No 124
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=3.6e-28 Score=165.03 Aligned_cols=154 Identities=21% Similarity=0.311 Sum_probs=119.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee-EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|++|+|||||++++.+..+.. ..++.... ...+... .+.+++||+||+..+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999998876543 33343322 2223333 47899999999999999889999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++++.....++..+.........|+++++||+|+.... ..++...... ..+.+++++||+++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776554689999999999987632 2222222111 12257899999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98754
No 125
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=4.6e-27 Score=167.30 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=126.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|+|||||++++..+.+. ...+|++..+..... +.+.+++||++|++++...+..+++++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3456799999999999999999988777654 556777776654432 45899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||+++..+|..+..|+..+.... ++.|+++++||+|+.+.....+... ..+..++.++++||++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999998887765432 5789999999999865432222111 112234578999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|.+|.+.+..
T Consensus 158 ~~f~~ia~~l~~ 169 (215)
T PTZ00132 158 KPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 126
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.1e-28 Score=153.82 Aligned_cols=160 Identities=19% Similarity=0.321 Sum_probs=128.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-cCccceeE----EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.-+|-+++|+-|+|||+|++++...++... ..|+++.+ ..+...++++++|||+|+++|+....++++.+.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 457999999999999999999999887643 44666554 4456678999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|++.+.++..+..|+.+.-. ...++..+++++||.|+... .++..+.....++..+..|.++||++|.||++.|
T Consensus 90 vyditrrstynhlsswl~dar~-ltnpnt~i~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 9999999999999998887543 44478899999999998653 2222222222333455679999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
-...+++..
T Consensus 166 le~akkiyq 174 (215)
T KOG0097|consen 166 LETAKKIYQ 174 (215)
T ss_pred HHHHHHHHH
Confidence 988888764
No 127
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=166.53 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=131.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|.+|+|||+|..++..+.+.. +.||++..+. .++.....+.++||+|++++..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999998874 5778775443 2333458899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
|+++++.||+.+..++..+.+.......|+++||||+|+... ..+..+.+...+...+++|+|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977666677899999999999863 12222222222445566799999999999999999
Q ss_pred HHHHHhhc
Q 030187 172 WLSNNIAN 179 (181)
Q Consensus 172 ~l~~~l~~ 179 (181)
.|.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987654
No 128
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.9e-26 Score=161.73 Aligned_cols=116 Identities=25% Similarity=0.434 Sum_probs=96.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE-------cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
+||+++|++|+|||||++++..+.+. ...+|++.++. .+.. ..+.+++||++|++++...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999998875 35567764432 2222 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~D~~~~ 133 (181)
+|+|||+++++||+++..|+.++.... ...+.|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988876531 1246899999999998653
No 129
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-27 Score=157.42 Aligned_cols=177 Identities=38% Similarity=0.721 Sum_probs=155.4
Q ss_pred chHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC--------cccccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 3 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.....+++-.+++..+.++++|+-++|||||+..+.... ...-.+|++.+..++......+.+||.+|++..
T Consensus 3 tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~l 82 (197)
T KOG0076|consen 3 TLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESL 82 (197)
T ss_pred hHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHH
Confidence 345678888999999999999999999999998875332 235567999999999988999999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CcccCcce
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQRHW 153 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (181)
+++|..||..||++++++|+++++.|+.....+..+..+-...+.|+++..||.|+.+.....++...++. .....+..
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~ 162 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDN 162 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccC
Confidence 99999999999999999999999999999999999988888889999999999999998888888777763 22344677
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++.++||.+|.||+|...|++..+.+
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhh
Confidence 89999999999999999999998865
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=6.9e-26 Score=155.24 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc---ccCccceeEEEEEEcCEEEEEEEcCCCCCccc---------cccccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~ 85 (181)
.+|+++|++|+|||||+++|.+..+.. ..+|.+.....+..+++.+++|||||+..... ........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 379999999999999999999887532 12345555555556678999999999743110 011111236
Q ss_pred cEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 86 QGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
|++++|+|+++..++ .....|+..+... . .+.|+++++||+|+.......+. ..+. +...++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~-~~~pvilv~NK~Dl~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL-F-KNKPVIVVLNKIDLLTFEDLSEI-EEEE----ELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh-c-CcCCeEEEEEccccCchhhHHHH-HHhh----hhccCceEEEEeccc
Confidence 899999999877653 5555555554332 1 47899999999999765333321 1111 223457899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030187 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~~v~~~~~~l~~~l 177 (181)
.|++++++++.+.|
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=4.4e-26 Score=156.44 Aligned_cols=156 Identities=26% Similarity=0.251 Sum_probs=108.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCE-EEEEEEcCCCCC----cccccccc---ccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~~---~~~~d~ 87 (181)
+|+++|++|+|||||+|+|.+.... . ..+|.......+...+. .+.+|||||..+ .+.....+ +.++|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999876531 1 12233434444555554 899999999642 22222333 346999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++ ++++....|...+.... ...++|+++|+||+|+.+.....+........ ..+.+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999988 78888877766654432 12478999999999987654433332222111 0234688999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998754
No 132
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.94 E-value=2e-26 Score=147.18 Aligned_cols=164 Identities=47% Similarity=0.804 Sum_probs=152.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcC-EEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.++.++|+++|..++|||||+.+|.+.......||.+++...+..++ +.+++||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 37789999999999999999999999999999999999999998865 99999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|.++...|++....+.+++........|+.+..||.|+......+++...+.+..++.+-+++.+|||.+++|+..-.++
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999999999999999999888889999999999999988888999999999988888999999999999999988888
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
+....
T Consensus 174 v~sn~ 178 (185)
T KOG0074|consen 174 VQSNP 178 (185)
T ss_pred hhcCC
Confidence 76644
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=9.7e-26 Score=156.06 Aligned_cols=151 Identities=18% Similarity=0.213 Sum_probs=108.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--c-----c-cccC------ccceeE----EEE-----EEcCEEEEEEEcCCCCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--I-----V-TTIP------TIGFNV----ETV-----EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~-----~-~~~~------t~~~~~----~~~-----~~~~~~~~i~D~~G~~~~~ 75 (181)
+|+++|++++|||||+++|.+.. + . ...+ +.+... ..+ +..++.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998632 1 0 1111 112221 122 2356889999999999999
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCcc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRH 152 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (181)
..+..+++.+|++++|+|+++..+++....++. ... .++|+++++||+|+.+.... +++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999988766666555443 222 46899999999998653221 2333333221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 153 WYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..++++||++|.|+++++++|.+.+..
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 248899999999999999999987643
No 134
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=3.5e-26 Score=156.52 Aligned_cols=163 Identities=17% Similarity=0.250 Sum_probs=124.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE-EEEE---EcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+|+++||+..+|||+|+..+..+.+. .+.||+--++ ..+. ...+++.+|||+|+++|..+++..++++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999888876 4566655333 2233 44589999999999999999988999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhh--------hCCCcccCcc-eEEEEec
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDK--------LGLHSLRQRH-WYIQSTC 159 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S 159 (181)
+||++.+++||+++...|...+.+.. ++.|+++||+|.|+.+.... +.+.+. .+...++..+ ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999999987777666655 89999999999999853211 111110 0000111112 4799999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
|++..|++++|+..+....
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999998887654
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=2.5e-25 Score=151.67 Aligned_cols=151 Identities=23% Similarity=0.155 Sum_probs=102.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---ccc---ccCccceeEEEEEEc-CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.|+++|++|+|||||+++|.+.. +.. ...|++..+..+... +..+++|||||++++......+++++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999998643 211 123555555555554 67899999999999877777778899999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+++... ......+. .+... ...|+++++||+|+...... +++.+.+.... ..+.+++++||++|.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcCHH
Confidence 99976211 11111111 11111 12489999999999754211 22222222111 124579999999999999
Q ss_pred HHHHHHHH
Q 030187 168 EGLDWLSN 175 (181)
Q Consensus 168 ~~~~~l~~ 175 (181)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=4.7e-25 Score=155.77 Aligned_cols=153 Identities=21% Similarity=0.225 Sum_probs=108.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcC-EEEEEEEcCCCCCc---------ccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKN-ISFTVWDVGGQDKI---------RPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~---------~~~~~~~ 81 (181)
+..++|+++|++|+|||||+|++.+.... ...+|.......+...+ ..+.+|||||..+. ...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 45689999999999999999999987632 12344454444555544 48999999997332 1111 23
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+.++|++++|+|++++.++.....+. +.+......++|+++|+||+|+....... .. ....+.+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56899999999999888776654433 33333333578999999999987643222 11 11234468899999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030187 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l 177 (181)
++.|+++++++|.+.|
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=7.1e-25 Score=150.12 Aligned_cols=155 Identities=22% Similarity=0.186 Sum_probs=108.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEEc---CEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.|+++|++|+|||||+++|....+... ..|.......+..+ +..+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876542 23333333444443 678999999999999888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCc--ccCcceEEEEecccCCCCHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHS--LRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+++....+.. ..+.. +.. .+.|+++|+||+|+...... .+....+.... .....++++++||++|.|+++
T Consensus 82 d~~~~~~~~~~-~~~~~-~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 82 AADDGVMPQTI-EAIKL-AKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ECCCCccHHHH-HHHHH-HHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 99875322221 11211 222 46899999999998754211 11111121111 112356799999999999999
Q ss_pred HHHHHHHHhh
Q 030187 169 GLDWLSNNIA 178 (181)
Q Consensus 169 ~~~~l~~~l~ 178 (181)
++++|.+...
T Consensus 157 l~~~l~~~~~ 166 (168)
T cd01887 157 LLEAILLLAE 166 (168)
T ss_pred HHHHHHHhhh
Confidence 9999987643
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=5.2e-24 Score=143.78 Aligned_cols=153 Identities=22% Similarity=0.296 Sum_probs=112.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEEcC--EEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+||+++|++|+|||||++++....+. ...++....... +...+ +.+.+||+||+.++...+....++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999988743 333444444433 45555 7899999999999999988889999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|.... .++.... .+...+..... .+.|+++++||+|+............+.... ..+++++||++|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLN----GEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhcc----CCceEEeecCCCCCHHHH
Confidence 998766 6666665 33333333222 2789999999999976543333333333221 235899999999999999
Q ss_pred HHHHH
Q 030187 170 LDWLS 174 (181)
Q Consensus 170 ~~~l~ 174 (181)
++.|-
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
No 139
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=4.4e-24 Score=160.84 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=108.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCC-ccccc-------cccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK-IRPLW-------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~~~ 82 (181)
.+..+|+++|.+|+|||||+|+|.+..+... .+|.......+..++.++.+|||||..+ +..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4667999999999999999999998876432 2343444445666778999999999853 22221 1236
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.++|++++|+|..+ ++.....++.+.+.. .+.|.++|+||+|+.+. ...++.+.+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455555555554443 24567789999998654 233333333211 1124689999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|+++++++|.+.+.+
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999987653
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.3e-25 Score=157.05 Aligned_cols=159 Identities=23% Similarity=0.323 Sum_probs=102.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcCEEEEEEEcCC-----------CCCccccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~ 82 (181)
...++|+++|++|+|||||+|++.+..+.. ..++.......+... .+.+||||| +++++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999876532 233333322333333 689999999 455655555554
Q ss_pred c----CccEEEEEEECCCcccHH---------HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-
Q 030187 83 Q----NTQGLIFVVDSNDRDRVV---------EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH- 146 (181)
Q Consensus 83 ~----~~d~~ilv~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~- 146 (181)
. .++++++|+|.++...+. .....+...+.. .++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 357888888876432210 011112222222 478999999999986543 233444444431
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.....+.+++++||++| |+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 11112236889999999 999999999998764
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=5.4e-25 Score=146.92 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=92.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCC-----CccccccccccCccEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ilv~d 93 (181)
||+++|++|+|||||+|++.+..+. ..+|.+..+ .. .+|||||+. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999987652 334433322 22 689999973 2333333 4789999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++.++... .|.+.. ..|+++++||+|+.+.. ..++..+..... ...+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~~--~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP--GFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh--hHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence 9998887542 233321 23899999999986532 222222111111 0126889999999999999998
Q ss_pred HH
Q 030187 173 LS 174 (181)
Q Consensus 173 l~ 174 (181)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 142
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=9.2e-24 Score=147.10 Aligned_cols=156 Identities=23% Similarity=0.210 Sum_probs=113.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-------------------cCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT-------------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
+|+++|.+|+|||||+|.+.+...... ..+.......+......+.+||+||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999987654321 1233334445566678999999999999988888
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc-------
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL------- 148 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~------- 148 (181)
.+++.+|++++|+|+.++.+.... ..+.. +.. .+.|+++++||+|+....... ++.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~-~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRI-ARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHH-HHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 889999999999999866543322 22222 222 578999999999998643322 23333332211
Q ss_pred --cCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.....+++++||++|.|+++++++|.+.+..
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2346789999999999999999999988753
No 143
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=3e-24 Score=160.87 Aligned_cols=157 Identities=24% Similarity=0.204 Sum_probs=112.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEE-cCEEEEEEEcCCCCCc----ccc---ccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEY-KNISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d 86 (181)
..|+++|.||||||||++++...+.. . ...|.......+.. +..++.+||+||.-+. ..+ +..++.+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47999999999999999999875422 1 12355555555666 4578999999996421 122 334556799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEecccCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+.....+ ..+... ...+.+++++||+++.
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCC
Confidence 9999999998888888887777665432 234789999999999875432221 111111 1123568899999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|+++++++|.+.+.
T Consensus 315 GI~eL~~~L~~~l~ 328 (335)
T PRK12299 315 GLDELLRALWELLE 328 (335)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=1.8e-23 Score=141.37 Aligned_cols=143 Identities=21% Similarity=0.202 Sum_probs=106.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~ 85 (181)
++|+++|++|+|||||++++.+.... ...+ +.......+...+..+.+|||||..++... ....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987642 2222 333334455566789999999998665432 22456789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|++++.+......+.. ..+.|+++++||+|+...... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998777766554332 257899999999998765332 1122345789999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 145
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=3.5e-24 Score=157.52 Aligned_cols=122 Identities=21% Similarity=0.380 Sum_probs=101.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE---------------cCEEEEEEEcCCCCC
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~i~D~~G~~~ 73 (181)
......+||+++|+.|+|||||++++..+.+. ...+|++.++. .+.. ..+.+++||++|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 44567799999999999999999999988775 34678776542 2332 247899999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~D~~~~ 133 (181)
|+.++..++++++++|+|||++++++|+.+..|+..+..... ..++|+++|+||+|+...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999888765421 135899999999998653
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=4.6e-24 Score=149.57 Aligned_cols=145 Identities=22% Similarity=0.239 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc--CCcccc-----------------cCccceeEEEEEEcCEEEEEEEcCCCCCccccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL--GEIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~--~~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 78 (181)
-+|+++|++++|||||+++|.. +.+... ..+.......+..++..+++|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 333221 112223334566778999999999999999999
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhC-CC-cccCcce
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLG-LH-SLRQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~-~~-~~~~~~~ 153 (181)
..+++++|++++|+|+++. .+.....++..... .++|+++++||+|+...... +++...+. .. .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 9999999999999999863 22333333333322 46889999999998653221 22222221 11 1123467
Q ss_pred EEEEecccCCCCHH
Q 030187 154 YIQSTCATSGEGLY 167 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~ 167 (181)
+++++||++|.|+.
T Consensus 158 ~iv~~Sa~~g~~~~ 171 (194)
T cd01891 158 PVLYASAKNGWASL 171 (194)
T ss_pred CEEEeehhcccccc
Confidence 89999999997763
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.2e-23 Score=165.08 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=108.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCC----------ccccc-cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPLW-RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~ 80 (181)
..++|+++|.+|+|||||+|+|.+.... ...+ |.+.....+...+..+.+|||||..+ +.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999987642 2222 33333345566777889999999532 22221 24
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++++|+|++++.+++... ++..+.. .+.|+++|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999888877664 3333332 57899999999999754322222222111111112346889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++|+.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988664
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=2.9e-24 Score=143.81 Aligned_cols=149 Identities=28% Similarity=0.449 Sum_probs=113.7
Q ss_pred EEcCCCCChHHHHhhhhcCCc-c-cccCccceeEEEEEEc----CEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 22 MVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
++|++|+|||||++++.+... . ...+|. ......... ...+.+||+||+..+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 2 333343 444444433 678999999999988888888889999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH--hhhCCCcccCcceEEEEecccCCCCHHHHHHHH
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT--DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
++.++.....++..........+.|+++++||+|+.......... .... .....+++++|+.++.|+++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcEEEEecCCCCChHHHHHHH
Confidence 998888888874444444455789999999999998765443321 1111 1234579999999999999999988
Q ss_pred HH
Q 030187 174 SN 175 (181)
Q Consensus 174 ~~ 175 (181)
.+
T Consensus 156 ~~ 157 (157)
T cd00882 156 AE 157 (157)
T ss_pred hC
Confidence 63
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=3.6e-24 Score=147.60 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=106.3
Q ss_pred EEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEc-CEEEEEEEcCCCCC----cccc---ccccccCccEEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~---~~~~~~~~d~~il 90 (181)
++|++|+|||||+|+|.+.... . ..+|.......+... +..+.+||+||..+ .+.. +...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999987631 1 123444444455566 78999999999632 2222 2345678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+|++++ .++.....+..++..... ..+.|+++|+||+|+.......... ........+.+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999887 467777666666654322 1478999999999997654333321 001111233468899
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 030187 159 CATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l 177 (181)
||+++.|++++++++.+.+
T Consensus 158 Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 158 SAKTEEGLDELIRAIYELL 176 (176)
T ss_pred ehhhhcCHHHHHHHHHhhC
Confidence 9999999999999987653
No 150
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=7.6e-24 Score=151.09 Aligned_cols=163 Identities=29% Similarity=0.392 Sum_probs=121.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEE--c--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+||+++|++|+|||||+++|.++.+.. ..+|+...+..... . .+++.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999998764 44565544433222 2 5789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhh----------CCCccc-CcceEEEEe
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKL----------GLHSLR-QRHWYIQST 158 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~----------~~~~~~-~~~~~~~~~ 158 (181)
|+|.++..++.+....|.+.+........|+++++||+|+........ +...+ ...... .....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998777777776666665654445799999999999987532111 11110 000000 112238899
Q ss_pred ccc--CCCCHHHHHHHHHHHhh
Q 030187 159 CAT--SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~--~~~~v~~~~~~l~~~l~ 178 (181)
|++ .+.++.+++..+...+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999988775
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.6e-23 Score=141.70 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=101.2
Q ss_pred EEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc--------cccccccCccEE
Q 030187 21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (181)
Q Consensus 21 ~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~~ 88 (181)
+++|++|+|||||+++|.+.... ...+ |...........+..+.+|||||...+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987532 2222 33344445666778999999999987654 334567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
++|+|+.+..+... .++.+.+.. .+.|+++++||+|+............++. .+++++|+++|.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence 99999976543332 223333333 35899999999999765332111111111 1478999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
++++|.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
No 152
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=9e-24 Score=147.89 Aligned_cols=156 Identities=21% Similarity=0.123 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC----Ccc------cccCccceeEEEEEEc--------------CEEEEEEEcCCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG----EIV------TTIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~----~~~------~~~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~ 73 (181)
++|+++|++++|||||+++|... .+. ....|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111 1223555444444333 67899999999976
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--c
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH--S 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~--~ 147 (181)
+........+.+|++++|+|+++....+....+. .... .+.|+++++||+|+...... +++.+.+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444556789999999998654333322222 1111 25699999999998754322 2222221100 0
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
....+++++++||++|.|+++++++|.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123567999999999999999999998775
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.7e-23 Score=164.17 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=106.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCc----cceeEEEEEEcCEEEEEEEcCCCCC--------cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT----IGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 83 (181)
...+|+++|.+|+|||||+|+|.+.......++ .......+...+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 347999999999999999999998764322222 2233344556678899999999763 2333456788
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
.+|++++|+|+++..++.. ..+.+.+.. .++|+++|+||+|+..... +........ . + ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence 9999999999987765532 233344433 5799999999999865321 111111111 1 1 2358999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++++++.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999987754
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.6e-23 Score=158.15 Aligned_cols=151 Identities=22% Similarity=0.224 Sum_probs=108.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEE-cCEEEEEEEcCCCCC---------ccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~ 82 (181)
..++|+++|.+|+|||||+|+|.+.... ...+|.+.....+.. .+..+.+|||+|..+ |...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4489999999999999999999987642 124566666666666 467999999999722 22222 246
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.++|++++|+|++++.+......+ .+++......+.|+++|+||+|+..... +..... ...+++.+||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDEPR---IERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCChHh---HHHHHh------CCCCEEEEEccC
Confidence 889999999999988877665433 3344433335789999999999875322 211111 012478999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
|.|++++++.|.+.+
T Consensus 337 g~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 337 GEGLDLLLEAIAERL 351 (351)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999987653
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=4.6e-23 Score=159.69 Aligned_cols=149 Identities=16% Similarity=0.177 Sum_probs=109.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
+..++|+++|+||+|||||+|+|.+... ....| |.......+..++..+++|||||..++... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 4679999999999999999999998753 23333 333334456677889999999998765432 23577
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.+++.. |+..... .+.|+++|+||+|+... ..+.+.+ ..+.+++++||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence 899999999999988877654 5444322 46899999999998654 2222211 1233578999998
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
.|++++++.|.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6999999998887754
No 156
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=2.2e-23 Score=152.99 Aligned_cols=151 Identities=18% Similarity=0.154 Sum_probs=102.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEE-EEEcCEEEEEEEcCCCCCccc--------cccccccCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 86 (181)
+|+++|.||+|||||+|+|.+...... ..|....... ....+..+.+|||||...... ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999875422 2232222222 233557899999999754321 1234578999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-CCcccCcceEEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..........+. .... .+++++||++|.|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~v~~iSA~~g~g 151 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDF----KDIVPISALTGDN 151 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCC----CceEEEecCCCCC
Confidence 999999998776654 333333333 4689999999999874322222222221 1111 1688999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++++.|.+.+..
T Consensus 152 i~~L~~~l~~~l~~ 165 (270)
T TIGR00436 152 TSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987653
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=2.3e-23 Score=155.99 Aligned_cols=156 Identities=24% Similarity=0.241 Sum_probs=110.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcC-EEEEEEEcCCCCCcc----cc---ccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKN-ISFTVWDVGGQDKIR----PL---WRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~----~~---~~~~~~~~d 86 (181)
..|+++|.|++|||||++++...+.. . ..+|...+...+...+ ..+++||+||..+.. .+ +..++.+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 58999999999999999999876521 1 1234445555566665 899999999975322 22 233345799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 87 GLIFVVDSNDR---DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~ilv~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++. ++++....|..++.... ...++|+++|+||+|+......+++.+.+.. ..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999876 67777776665554332 2357899999999999765433333333321 1234688999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
+.|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=3.4e-23 Score=161.19 Aligned_cols=146 Identities=21% Similarity=0.283 Sum_probs=109.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
++.++|+++|.+|+|||||+|+|.+... ....+ |.+.....+...+..+.+|||||..++... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3568999999999999999999998763 22222 444455566677889999999998765432 23467
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.+++.... |.. ..+.|+++|+||+|+....... ...+.+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877765433 322 2578999999999987542221 11234688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|+++++++|.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 159
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=2.9e-23 Score=140.68 Aligned_cols=146 Identities=21% Similarity=0.196 Sum_probs=102.0
Q ss_pred EEcCCCCChHHHHhhhhcCCcc-ccc--CccceeEEEEEEcCEEEEEEEcCCCCCcccc------ccccc--cCccEEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIF 90 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~il 90 (181)
++|++|+|||||++++.+.... ... .|.......+...+..+.+|||||+..+... +..++ .++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999887532 222 2455555566677789999999998876642 34455 48999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+.+++... .++..+.. .++|+++++||+|+.+..........+. ...+.+++++||.+|.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998754432 33333332 3689999999999976532221111111 1123468999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
+.+.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99987643
No 160
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=5.1e-24 Score=146.83 Aligned_cols=130 Identities=22% Similarity=0.371 Sum_probs=101.9
Q ss_pred cccCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 030187 44 TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
Q Consensus 44 ~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
...||++..+.. +. ...+.+.+|||+|+++++..+..+++++|++|+|||++++++|+.+..|+..+.... .+..
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 456788876643 23 245899999999999999999999999999999999999999999998888876653 2578
Q ss_pred eEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 120 VLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 120 piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
|+++|+||+|+.+. ...++.... ....+..|+++||++|.||+++|++|++.+.+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999998642 222222111 12234568999999999999999999988754
No 161
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=2.2e-23 Score=146.92 Aligned_cols=157 Identities=27% Similarity=0.386 Sum_probs=115.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCc-cEEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~ilv~d 93 (181)
+|+++|++|+|||||+++|..+.+....++...+...+.. .+..+.+||+||+.+++..+..+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988776555544443333332 367899999999999999888899998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------C------------
Q 030187 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG-------------L------------ 145 (181)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~-------------~------------ 145 (181)
+++. +++.....++.+++... ..+++|+++++||+|+......+.+.+.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67788777777765432 225799999999999876433222111110 0
Q ss_pred --------Ccc--cCcceEEEEecccCCC-CHHHHHHHHHH
Q 030187 146 --------HSL--RQRHWYIQSTCATSGE-GLYEGLDWLSN 175 (181)
Q Consensus 146 --------~~~--~~~~~~~~~~Sa~~~~-~v~~~~~~l~~ 175 (181)
..+ ...++.+.++|++.+. |+++..+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 000 1245779999998876 69998888764
No 162
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=5.9e-26 Score=150.62 Aligned_cols=154 Identities=18% Similarity=0.340 Sum_probs=128.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE----EEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+|++++|+.++||||++++++.+-|+ ++..|++.++. .+...++...+||++|+++|..+...|++.|.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 5689999999999999999999988876 44557776553 344466888999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||+-+|+.||+....|+..+.... ..+|.++|-||+|+.+.. ..+-..+.+.. .++.+|++...|
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~--------RlyRtSvked~N 168 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK--------RLYRTSVKEDFN 168 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh--------hhhhhhhhhhhh
Confidence 999999999999999999987654 479999999999997642 22333333333 477899999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
|..+|.+|++++.+
T Consensus 169 V~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 169 VMHVFAYLAEKLTQ 182 (246)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998754
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=2.3e-22 Score=138.05 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=103.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc-----------cccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRHY 81 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~ 81 (181)
.++|+++|++|+|||||++++.+.... ...+ +.......+...+..+.+||+||..+.... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 579999999999999999999887532 1112 222222344556678999999997543211 1234
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++.+|++++|+|+.++.+..... .+.. ... .+.|+++++||+|+.+. .....+..............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~-~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGL-ILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHH-HHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 57899999999998876655432 2222 222 36899999999998765 23333233222111111235799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 030187 160 ATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~ 176 (181)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=1.1e-22 Score=158.46 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=109.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--ccc--CccceeEEEEEEcCEEEEEEEcCCCCCccccc-----------cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW-----------RH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------~~ 80 (181)
..++|+++|.+|+|||||+|+|.+.... ... .|.......+...+..+.+|||||..+..... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999987632 222 23333334455567789999999976554332 24
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+++.+|++++|+|++++.+.+... +...+.. .+.|+++|+||+|+. +....+++.+.+.........++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR--IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH--HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 578999999999998776655442 2222222 478999999999997 3222333333332211112346799999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
|++|.|++++|+++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 165
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=5.1e-23 Score=137.54 Aligned_cols=141 Identities=22% Similarity=0.286 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCcc------ccccccc--cCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYF--QNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~~d 86 (181)
++|+++|.||+|||||+|+|.+.+.. . ...|+......+...+..+.++|+||--... .....++ ..+|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998743 2 3346677777788888999999999942222 1223333 5799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++. +.......++.+ .++|+++++||+|..... ..+.+.+.++. +++.+||++
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 99999999753 333444444444 489999999999986543 34555555554 689999999
Q ss_pred CCCHHHHHHHH
Q 030187 163 GEGLYEGLDWL 173 (181)
Q Consensus 163 ~~~v~~~~~~l 173 (181)
+.|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999865
No 166
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.8e-22 Score=136.62 Aligned_cols=154 Identities=20% Similarity=0.186 Sum_probs=103.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc---Cc-cceeEEEEEEcCEEEEEEEcCCCCCccc--------ccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PT-IGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t-~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 83 (181)
+..+|+++|++|+|||||+|++.+....... .+ .......+...+..+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999887643111 12 1122223444568899999999765432 2234578
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+|++++|+|++++ +.....++.+.+.. .+.|+++++||+|+.. .....+....+... ....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence 89999999999876 22233333333332 2688999999999873 33333333333221 1134688999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
+.|++++++.|.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999997753
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=5.4e-23 Score=139.53 Aligned_cols=141 Identities=21% Similarity=0.202 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcc----ccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR----PLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~ilv~d~ 94 (181)
+|+++|++|+|||||+|++.+.... ..++.+.. +... .+||+||..... ......++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v~-----~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAVE-----FNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceEEE-----ECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998865421 12222222 1111 369999973222 2222346899999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
++.+++. ..|+..+ . .+.|+++++||+|+.+. ..+.+.+...... ...+++++||++|.|++++++.+.
T Consensus 75 ~~~~s~~--~~~~~~~-~----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI-G----VSKRQIAVISKTDMPDA-DVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc-c----CCCCeEEEEEccccCcc-cHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence 9877652 2333332 1 36789999999998653 2333222221111 113799999999999999999998
Q ss_pred HHhh
Q 030187 175 NNIA 178 (181)
Q Consensus 175 ~~l~ 178 (181)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8764
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=4.9e-22 Score=153.22 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=104.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCE-EEEEEEcCCCCCc--cccc------cccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLW------RHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~------~~~~~~~ 85 (181)
.+|+++|.+|+|||||+|+|.+.... ....|.+.....+...+. .+.+|||+|..+. ...+ ...++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987642 123455555555655543 8899999997432 1112 2336889
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE-EEEecccCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (181)
|++++|+|++++.++.....+ ..++......++|+++|+||+|+..... ...... . .+.+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 999999999988776665432 2233332224789999999999864311 111111 0 1112 4789999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|+++++++|.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998875
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1e-22 Score=143.64 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc---c---cccCccceeEEEEEEc---------------------------C----
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI---V---TTIPTIGFNVETVEYK---------------------------N---- 60 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~---~---~~~~t~~~~~~~~~~~---------------------------~---- 60 (181)
++|+++|+.|+|||||+..+.+... . ....++...+..+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5799999999999999998865421 0 1111222222111111 2
Q ss_pred --EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030187 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (181)
Q Consensus 61 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~- 137 (181)
..+.+|||||++++...+...+.++|++++|+|++++.........+..+ ... ...|+++++||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 67899999999998888888888999999999998632111111122111 111 235799999999987532222
Q ss_pred ---HHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++...+.. ....+++++++||++|.|++++++.|.+.+..
T Consensus 158 ~~~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12221111 11124578999999999999999999987754
No 170
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=1.5e-22 Score=141.28 Aligned_cols=159 Identities=24% Similarity=0.198 Sum_probs=113.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc---------------------ccccCccceeEEEEE--EcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI---------------------VTTIPTIGFNVETVE--YKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~---------------------~~~~~t~~~~~~~~~--~~~~~~~i~D~~G~ 71 (181)
++..+|+++|+.++|||||+++|..... ....-|.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 3567999999999999999999974321 012336666777777 78899999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhh-CCCc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKL-GLHS 147 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~-~~~~ 147 (181)
.+|.......++.+|++|+|+|+.+.-..+ ....+..... .++|+++++||+|+..... .+++...+ ....
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 999988888899999999999997553222 2222222222 5788999999999983211 11222122 1111
Q ss_pred ccC-cceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQ-RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
... ..++++.+||.+|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 3578999999999999999999998764
No 171
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=4.4e-23 Score=133.68 Aligned_cols=109 Identities=25% Similarity=0.452 Sum_probs=80.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc---cccC----ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~---~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
||+|+|++|+|||||+++|.+..+. ...+ +..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988765 1111 22222222222344599999999999888877779999999999
Q ss_pred EECCCcccHHHHHHH---HHHHhcCCCCCCCeEEEEEeCCC
Q 030187 92 VDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piivv~nK~D 129 (181)
||++++++++.+..+ +..+.. ...++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence 999999999887554 333322 124699999999998
No 172
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=5.9e-22 Score=153.97 Aligned_cols=157 Identities=27% Similarity=0.309 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcCEEEEEEEcCCCCCc----ccc---ccccccCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d 86 (181)
-.+|+++|.||+|||||+|+|.+.+.. . ..+|...+...+...+..|.+||+||.-.. ..+ ...++.++|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 358999999999999999999876532 1 234566666677788889999999995321 111 233467899
Q ss_pred EEEEEEECCC----cccHHHHHHHHHHHhcCC----------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcccCc
Q 030187 87 GLIFVVDSND----RDRVVEARDELHRMLNED----------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQR 151 (181)
Q Consensus 87 ~~ilv~d~~~----~~s~~~~~~~~~~~~~~~----------~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 151 (181)
++++|+|+++ +++++....+..++.... .....|+++|+||+|+.+.....+. ...+ ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence 9999999975 345555444333332221 2346899999999999754322222 2222 122
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+++++++||+++.|+++++++|.+.+.
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988764
No 173
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=6.8e-22 Score=158.12 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=110.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC-------c----cc-------ccCccceeEEEEEE-----cCEEEEEEEcCCCCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE-------I----VT-------TIPTIGFNVETVEY-----KNISFTVWDVGGQDKI 74 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~-------~----~~-------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~ 74 (181)
-+|+++|++++|||||+++|.... + .. ...|+......+.+ ..+.+++|||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999997532 1 01 01222222223333 2388999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQR 151 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 151 (181)
...+..+++.+|++++|+|+++..+.+....|+... . .++|+++++||+|+...... +++.+.++..
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----- 153 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----- 153 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999877777666554332 2 36799999999998654221 2333333321
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...++++||++|.|++++|+.|.+.+..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1247899999999999999999987753
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=1.9e-22 Score=141.51 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=102.4
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc-ccccCccceeEE-EEEEcCEEEEEEEcCCCC----------Ccccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQD----------KIRPLWR 79 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~----------~~~~~~~ 79 (181)
.+.....+|+++|++|+|||||++++.+..+ ....++.+.+.. .+...+.++.+|||||.. ++.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 3445668999999999999999999998753 333333332221 111124789999999953 2223333
Q ss_pred ccccC---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEE
Q 030187 80 HYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 80 ~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
.+++. ++++++|+|++.+.+... .++...+.. .+.|+++++||+|+.+....+......... ....+..++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCCceE
Confidence 44443 467888899876543322 222233322 468899999999987643332222111110 111134688
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||+++.|++++++.|.+.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999988765
No 175
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=9.9e-22 Score=156.57 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccccc---CccceeEEEEEEcCE-EEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+..+|+++|++++|||||+++|.+..+.... .|..+....+...+. .+.+||||||+.|..++...++.+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 346789999999999999999999887654321 244444445555443 8999999999999999988899999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (181)
+|+|+++...-+.. ..+... . ..++|+++++||+|+.... .+++...+..... -....+++++||++|.|
T Consensus 164 LVVda~dgv~~qT~-e~i~~~-~---~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAISHA-K---AANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHH-HHHHHH-H---HcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99998764322222 222221 1 2478999999999986532 2233222211111 01235789999999999
Q ss_pred HHHHHHHHHH
Q 030187 166 LYEGLDWLSN 175 (181)
Q Consensus 166 v~~~~~~l~~ 175 (181)
++++++++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999998864
No 176
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.89 E-value=1.2e-21 Score=132.33 Aligned_cols=151 Identities=24% Similarity=0.202 Sum_probs=105.7
Q ss_pred EEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEc-CEEEEEEEcCCCCCcccc-------ccccccCccEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPL-------WRHYFQNTQGLI 89 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~i 89 (181)
++|++|+|||||++++.+..... ...+........... ...+.+||+||....... ...+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998875431 112333333333333 678999999998766543 334778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+|+.+..+..... +...... .+.|+++++||+|+.......................+++++||+++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877666654 2323222 58899999999999876544443221122222334567999999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=6.1e-22 Score=154.50 Aligned_cols=147 Identities=23% Similarity=0.299 Sum_probs=102.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCC--------ccccccccccCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~ 85 (181)
.+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+...+..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987632 2222 44445556677789999999999887 223345667899
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+.++.+. ...++.+.+.. .+.|+++++||+|..+.. ....+..... .. .++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-LG----EPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-CC----CCEEEEeeCCCC
Confidence 999999999764332 22233333333 378999999999975421 1222222111 11 267899999999
Q ss_pred HHHHHHHHHHH
Q 030187 166 LYEGLDWLSNN 176 (181)
Q Consensus 166 v~~~~~~l~~~ 176 (181)
++++++.+...
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 178
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.5e-21 Score=149.91 Aligned_cols=152 Identities=25% Similarity=0.272 Sum_probs=106.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEc-CEEEEEEEcCCCCC----cccccc---ccccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWR---HYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~---~~~~~~d~ 87 (181)
.|+++|.||+|||||++++.+.+.. ....|...+...+... +..+.+||+||... ...+.. .++.++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999876532 1123455555556655 67899999999643 222222 33556999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccC
Q 030187 88 LIFVVDSNDR---DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~ilv~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|+|+++. ++++....+..++.... ...++|+++|+||+|+..... .+.+.+.+. .+++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 66666666555554322 234789999999999854311 122222222 3688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
+.|+++++++|.+.+.
T Consensus 312 geGI~eL~~~L~~~l~ 327 (424)
T PRK12297 312 GQGLDELLYAVAELLE 327 (424)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=5.8e-22 Score=154.43 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=105.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc--ccc--CccceeEEEEEEcCEEEEEEEcCCCC--------CccccccccccCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|+|.+.... ... .|....+..+.+.+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987632 222 24444556667788899999999963 23344566788999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++++|+|+.+.-+. ....+...++. .++|+++|+||+|+............++.. +++++||+.|.|+
T Consensus 81 ~vl~vvD~~~~~~~--~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTP--EDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCH--HHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCCh
Confidence 99999999764332 22333444443 478999999999987643221111122221 4789999999999
Q ss_pred HHHHHHHHHHhh
Q 030187 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~l~~~l~ 178 (181)
+++++.+.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999988774
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=4.2e-21 Score=149.83 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=108.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc-----------cc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~ 79 (181)
...++|+++|.+|+|||||+|++.+.... ...+ |.......+...+..+.+|||||..+.... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999977632 2222 222223345557788999999996543221 12
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++.+|++++|+|++++.+.+... +...+.. .+.|+++++||+|+.+....+++...+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR--IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 3578899999999998776655442 2222222 4689999999999875433334433332221122345799999
Q ss_pred ccCCCCHHHHHHHHHHHh
Q 030187 160 ATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l 177 (181)
|++|.|++++++.+.+..
T Consensus 326 A~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987754
No 181
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=1.6e-21 Score=144.78 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=104.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccceeEEE-EEEcCEEEEEEEcCCCCCccc--------ccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 83 (181)
+.-.|+++|+||+|||||+|+|.+.+.....+ |....... ...++..+.+|||||...... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999887542222 22222222 223558999999999754332 2234567
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++|++++|+|+++. +.....++.+.+.. .+.|+++|+||+|+.. ..........+... .....++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999862 23333444444442 4689999999999973 22222333322211 1124688999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
+.|++++++.|.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999998764
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.9e-21 Score=157.39 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=111.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..+...|+++|+.++|||||+++|....+... ..|..+..+.+.+.+..+++|||||++.|..++...++.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999987665421 123334445566677899999999999999999888899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccCCCCH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 166 (181)
|+|+++.-.-+.... +.. .. ..++|+++++||+|+.... ...+...+..... ....++++++||++|.|+
T Consensus 367 VVdAddGv~~qT~e~-i~~-a~---~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQTIEA-INH-AK---AAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhHHHH-HHH-HH---hcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999986422222211 221 11 2578999999999996542 2233222211101 112368999999999999
Q ss_pred HHHHHHHHH
Q 030187 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~l~~ 175 (181)
+++++.|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999874
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.7e-21 Score=158.27 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=105.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccce----eEEEEEEcCEEEEEEEcCCCCC--------ccccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 82 (181)
....+|+++|.+|+|||||+|+|.+.......++.+. ........+..+.+|||||... +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3457899999999999999999998764322222332 2333455678999999999763 223344567
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+.+|++++|+|+++. +......+.+.+.. .++|+++|+||+|+..... .......+. . + ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~---~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-L---G-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-C---C-CeEEEECCC
Confidence 899999999999753 33444444455543 5789999999999865321 112211111 1 1 235899999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|+++++++|.+.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999987753
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.8e-21 Score=158.18 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=109.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCC----------cccc-ccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~ 80 (181)
...+|+++|.+|+|||||+|+|.+.+. ....+ |.+.....+..++..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 358999999999999999999998864 22222 33333344566777889999999542 1111 123
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++.+|++++|+|+++..+.+... .+..+.. .+.|+++|+||+|+.+....+.+.+............+++.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999887777654 3333333 47899999999999764333333332221111112235678999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 185
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=2e-21 Score=151.01 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=104.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|.... .. ....|++.....++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4677999999999999999999997321 00 1233666666777778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A- 136 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~- 136 (181)
+..+.+|||||+++|.......+..+|++++|+|++++.++.....+...++... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766666789999999999986323322222222333221 2357999999999975221 1
Q ss_pred ---hHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 137 ---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+++.+.+.........++++++||++|.|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122222222222223467999999999999873
No 186
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=7.7e-22 Score=136.64 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=94.4
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCCc-ccccCccceeE--EEEEEcCEEEEEEEcCCCCC----------ccc
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRP 76 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~----------~~~ 76 (181)
...+..+.++|+++|++|+|||||+|++.+..+ ....++.+.+. ..+... -.+.+||+||... +..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 345667889999999999999999999998752 22223332221 112222 2799999999532 222
Q ss_pred ccccccc---CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCccc
Q 030187 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLR 149 (181)
Q Consensus 77 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~ 149 (181)
....+++ .++++++|+|++++-+.... .+...+.. .+.|+++++||+|+...... +++.+.+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 2233444 46899999999765443333 22233333 47899999999998754322 2233333321
Q ss_pred CcceEEEEecccCCCCHH
Q 030187 150 QRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~ 167 (181)
..+..++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 223478999999999974
No 187
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=1.6e-21 Score=147.25 Aligned_cols=148 Identities=23% Similarity=0.251 Sum_probs=111.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCcc---------ccccccccC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~ 84 (181)
..|+++|.||+|||||+|+|.+.+..- ...|.+-.+....+.+..|.++||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988542 2336666677788888899999999966332 224456788
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
||++++|+|. .+........+.++++. .++|+++|+||+|....+....-...+++. ..+.+||..|.
T Consensus 84 ADvilfvVD~--~~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeC--CCCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 9999999999 44455666666676663 569999999999987432222222223333 46789999999
Q ss_pred CHHHHHHHHHHHh
Q 030187 165 GLYEGLDWLSNNI 177 (181)
Q Consensus 165 ~v~~~~~~l~~~l 177 (181)
|+.++++.+++.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=2.6e-21 Score=154.67 Aligned_cols=155 Identities=21% Similarity=0.149 Sum_probs=108.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC---cc---cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE---IV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~---~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.|+++|++++|||||+++|.+.. +. ....|++..+..+...+..+.+||+||+++|...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998643 21 123355555666777778999999999999998888888999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHH----HhhhCCCcccCcceEEEEecccCCCCH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEI----TDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+|+++....+. ...+ .++.. .++| +++++||+|+.+....+.. ...+..... ..+++++++||++|.|+
T Consensus 81 VDa~~G~~~qT-~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGVMTQT-GEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence 99986321111 1111 12222 3566 9999999999764322221 111111101 11468999999999999
Q ss_pred HHHHHHHHHHhh
Q 030187 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~l~~~l~ 178 (181)
+++++.|.+.+.
T Consensus 155 ~eL~~~L~~l~~ 166 (581)
T TIGR00475 155 GELKKELKNLLE 166 (581)
T ss_pred hhHHHHHHHHHH
Confidence 999998876553
No 189
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=1.7e-21 Score=151.36 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=103.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|+.++|||||+++|... ... ....|++.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356799999999999999999999741 110 1123555556667778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN--A 136 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~ 136 (181)
+..+.+||+||+++|.......+..+|++++|+|+++.+++..... +...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 8999999999999988777777889999999999987754321111 111222221 2358999999999975321 1
Q ss_pred ----hHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 137 ----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222222222346899999999999986
No 190
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=7.1e-21 Score=153.97 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=109.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCcc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
..+..+|+++|++++|||||+++|....+... ..|..+..+.+.. .+..+.+|||||++.|...+..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 45778999999999999999999987665421 1233322333322 3589999999999999999998999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 162 (181)
++++|+|+++....+.... +..+ . ..++|+++++||+|+.... ...+...+..... ....++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~~~-k---~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-INYI-Q---AANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HHHH-H---hcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999976433222221 2222 2 2578999999999987642 2333332211100 11236899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030187 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~~v~~~~~~l~~~ 176 (181)
|.|++++++.|...
T Consensus 395 G~GIdeLle~I~~l 408 (742)
T CHL00189 395 GTNIDKLLETILLL 408 (742)
T ss_pred CCCHHHHHHhhhhh
Confidence 99999999988764
No 191
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=125.82 Aligned_cols=157 Identities=25% Similarity=0.342 Sum_probs=127.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc----------cc---cCccceeEEEEEEcC-EEEEEEEcCCCCCccccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV----------TT---IPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----------~~---~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~ 78 (181)
.+....||+|+|+.++||||++.++...... .. ..|+.+++......+ ..+.+++||||++|.-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 4567789999999999999999999876531 11 246667776666655 899999999999999999
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+.+.+.+.|+++|.+.+..+ -...+.+++.... .+|+++++||.|+.+....+.+.+.+.... .+.+.++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999988887 2233444444422 299999999999999988888888887763 34578999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030187 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~ 176 (181)
+|.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999988765
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=2e-20 Score=149.86 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=109.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--c---------cc-------ccCccceeEEEEEE-----cCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--I---------VT-------TIPTIGFNVETVEY-----KNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~---------~~-------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~ 72 (181)
+.-+++++|+.++|||||+.+|.... + .+ ...|+......+.+ .++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34589999999999999999997521 1 11 11233333333333 36889999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccc
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 149 (181)
+|...+..+++.+|++++|+|+++....+....|.. ... .++|+++|+||+|+...... +++.+.++..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 999999999999999999999987655555444432 222 36889999999998654321 2233322221
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...++++||++|.|+++++++|.+.+..
T Consensus 158 --~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 --ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred --cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1247899999999999999999987753
No 193
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.8e-20 Score=143.14 Aligned_cols=159 Identities=22% Similarity=0.178 Sum_probs=108.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcC-EEEEEEEcCCCCCcc-------ccccccccCccE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-ISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~-------~~~~~~~~~~d~ 87 (181)
.|+++|.||+|||||+|.|.+.+.. . ...|.......+...+ ..+.++|+||.-+-. .....++.++|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999876531 1 2235555555566654 469999999964321 112235788999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~ilv~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+++|+|++ +.++++....+..++... ....+.|+++|+||+|+.......+..+.+... . ....+++.+||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCC
Confidence 99999987 455666666655555432 122468999999999987653333322222111 0 11124789999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++++.|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988753
No 194
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=135.68 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=109.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc---ccCccceeEE-EEEEcCEEEEEEEcCCCCCcc--------ccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVE-TVEYKNISFTVWDVGGQDKIR--------PLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 82 (181)
.++-.|+++|.||+|||||+|++.+.+..- ...|...... .+..++.++.++||||--+-. ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 456689999999999999999999998542 2234443333 344567899999999943222 2234556
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEeccc
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..+|++++|+|+++. +.....+..+.++. .+.|+++++||+|...... .....+.+... .....++++||+
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeecc
Confidence 889999999999754 22344445455543 4689999999999887654 22332222211 111268899999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.|++.+.+.+...|.+
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999887753
No 195
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=9.4e-20 Score=130.86 Aligned_cols=149 Identities=21% Similarity=0.179 Sum_probs=100.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCcc-------ccccccccCccEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~ 88 (181)
+|+++|++|+|||||+++|.+.... . ..+|.......+...+..+++||+||..+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999986532 1 1234444455566788999999999975433 1234578999999
Q ss_pred EEEEECCCccc-HHHHHHHHH----------------------------------------HHhcCC-------------
Q 030187 89 IFVVDSNDRDR-VVEARDELH----------------------------------------RMLNED------------- 114 (181)
Q Consensus 89 ilv~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (181)
++|+|+++++. ...+...+. .++.+.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999986542 222222111 011000
Q ss_pred ---------C--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 115 ---------E--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 ---------~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
. ..-+|+++|+||+|+......+. +.. ..+++++||++|.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 02368999999999865432221 111 12477899999999999999998865
No 196
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=2.8e-20 Score=148.63 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=114.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcC--Cccc-----------------ccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLG--EIVT-----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
+|+++|+.++|||||+++|... .+.. ...|+......+.+.+..+++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999752 2211 12344555567888899999999999999998889
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc--cCcceE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHWY 154 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 154 (181)
.+++.+|++++|+|+.+. .......+|..... .++|+++++||+|+.+... ..++...+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999753 33444555655544 4788999999999865422 1222222221111 234568
Q ss_pred EEEecccCCC----------CHHHHHHHHHHHhhc
Q 030187 155 IQSTCATSGE----------GLYEGLDWLSNNIAN 179 (181)
Q Consensus 155 ~~~~Sa~~~~----------~v~~~~~~l~~~l~~ 179 (181)
++.+||++|. |++.+|+.+++.+..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999987753
No 197
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=1.3e-20 Score=145.34 Aligned_cols=161 Identities=18% Similarity=0.113 Sum_probs=104.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEEE--------------E------------cCEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVE--------------Y------------KNIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~--------------~------------~~~~ 62 (181)
+..++|+++|++++|||||++.|.+.... ....|+...+..+. . ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56799999999999999999999653211 11112222211110 0 1367
Q ss_pred EEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030187 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142 (181)
Q Consensus 63 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~ 142 (181)
+.+||+||+++|...+......+|++++|+|+++..........+. .+... ...|+++++||+|+.+.....+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888889999999999985431111122222 12211 23578999999999764322111111
Q ss_pred hC--CCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 143 LG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 143 ~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+. .......+++++++||++|.|++++++.|.+.+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 11 0111123568999999999999999999988654
No 198
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=1.1e-19 Score=130.66 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=110.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+|+++|++|+|||||+++|.... .. ....|+......+.+.+.++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999996421 00 1112444455677888999999999999999988
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCC---------
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL--------- 145 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~--------- 145 (181)
+..+++.+|++++|+|+++.-.. ....+|..... .++|+++++||+|+.... ..+++...++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999865433 23333433322 478999999999987421 11111111110
Q ss_pred -----------------------------------------------CcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 146 -----------------------------------------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 146 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
......-+|++..||.++.|+..+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000224478999999999999999999988764
No 199
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=137.16 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=110.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccc--cCccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
++.++++++|.||+|||||+|.|.+.+. .+. ..|.++-...++..++.+++.||+|-.+.... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 4779999999999999999999998873 333 34667777788899999999999996654433 23456
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+||.+++|+|++.+.+-....... .+. .+.|+++|.||.|+......... ... .+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~--~~~----~~~~~i~v~NK~DL~~~~~~~~~--~~~------~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE--LLP----KKKPIIVVLNKADLVSKIELESE--KLA------NGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH--hcc----cCCCEEEEEechhcccccccchh--hcc------CCCceEEEEecC
Confidence 7899999999998753222222211 222 57899999999999876553333 111 122578999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|++.+.+.|.+.+.
T Consensus 361 ~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 361 GEGLDALREAIKQLFG 376 (454)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 9999999999887654
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=2.4e-20 Score=132.00 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEEcCEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++|+|||||+++|.... .. ....|.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999996432 10 012244444555666778999
Q ss_pred EEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 030187 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK 142 (181)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~ 142 (181)
+|||||+++|...+...++.+|++++|+|++++..-+. .....++... ..+++++++||+|+.+... ...+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999999887666667889999999999976532111 1111222221 1346888999999875321 1112111
Q ss_pred hC--CCcccCcceEEEEecccCCCCHHH
Q 030187 143 LG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 143 ~~--~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+. ...+.....+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 001111234689999999999875
No 201
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=3e-20 Score=148.72 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=97.9
Q ss_pred cCCCCChHHHHhhhhcCCc-ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc------ccccc--cCccEEEEEE
Q 030187 24 GLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (181)
Q Consensus 24 G~~~~GKssli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~ilv~ 92 (181)
|+||+|||||+|++.+... ....| |.+.....+..++.++++|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998764 23333 333344456667788999999999877653 23332 3789999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+++.+. ...+..+..+ .+.|+++++||+|+.+.... +.+.+.+ +++++++||++|.|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9986432 2333333333 47899999999998653321 2222222 34689999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
No 202
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=122.43 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=126.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EE--EcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...-.+||.++|++..|||||+-++.++.+. ....+.+++... +. ..++.|.+||.+|++++.+..+....++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 3345689999999999999999999998874 445566766543 33 346889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++||++.++++.+...|+.+.-..+. .-+| ++||||-|..-. .+.++-....+...++..+.+.|.||+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999988755432 2334 678999996432 22233333334444555667888999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
|..+|.-+..++.
T Consensus 174 v~KIFK~vlAklF 186 (205)
T KOG1673|consen 174 VQKIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998777654
No 203
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=9.4e-20 Score=145.14 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=102.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEE----------------cCEEEEEEEcCCCCCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY----------------KNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~ 74 (181)
+..-|+++|++++|||||+++|.+..+... .++++..+...+. ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 456799999999999999999988765422 2233333322211 0123889999999999
Q ss_pred cccccccccCccEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHh
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAA 137 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~ 137 (181)
..++..+++.+|++++|+|+++. ++++.+. .+.. .+.|+++++||+|+.... ...
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 99999899999999999999863 3333322 2222 478999999999986410 000
Q ss_pred HHH-----------hhhCCCcc----------cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 138 EIT-----------DKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 138 ~~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.+. ..+....+ -....+++++||++|+|+++++++|..
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 010 01111111 123578999999999999999998864
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.84 E-value=1.2e-19 Score=145.07 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=112.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc--CCccc-------------ccC----ccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL--GEIVT-------------TIP----TIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~--~~~~~-------------~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
+-.+|+++|+.++|||||+++|.. +.+.. ... |+......+.+.+..+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 22211 112 22333445667889999999999999999
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC-Ccc-cCc
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL-HSL-RQR 151 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~-~~~-~~~ 151 (181)
.+..+++.+|++++|+|+.+.... .....+..... .++|.++++||+|...... ..++...+.. ... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 999999999999999999764322 23333444333 4788899999999876432 2233333311 111 234
Q ss_pred ceEEEEecccCCC----------CHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGE----------GLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~----------~v~~~~~~l~~~l~ 178 (181)
.++++.+||++|. |+..+++.+++.+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 5789999999998 58899999888765
No 205
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=9.2e-20 Score=149.21 Aligned_cols=151 Identities=20% Similarity=0.168 Sum_probs=104.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCccceeEEEEEEcCEEEEEEEcCCCCCcccc----------cccc-
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHY- 81 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~- 81 (181)
+.++|+++|+||+|||||+|++.+.... .. ..|++.....+...+.++++||+||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4579999999999999999999876532 22 22444444556677889999999998766432 1122
Q ss_pred -ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 82 -FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 -~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
...+|++++|+|+++.++ ...++.++.+ .++|+++++||+|..+........+.+. +..+++++++||
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 247999999999987543 2334444433 4789999999999875432221111111 112346889999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030187 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l 177 (181)
++|.|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999887654
No 206
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=9.4e-21 Score=124.37 Aligned_cols=163 Identities=33% Similarity=0.581 Sum_probs=138.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
++.=|++++|.-|+|||||++-|...+.....||.-.+.......+++|+.+|.+|+.+.+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 45679999999999999999999988877777877777777888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------cccCcceEEEEecccC
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATS 162 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~ 162 (181)
.+.+.|.+....+..++........|+++.+||+|.+.+....+..-.+++. ....+.+..|-||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 9999999999988888877667899999999999999887666665544321 1233567788899999
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
+.|--+.|.++...+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 888888887776543
No 207
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.5e-20 Score=124.25 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=132.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
-.++++++|..|.||||+.++...+++. +..+|++........ ..++|..|||.|++.+......++-++.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 3689999999999999999999999987 467798988765443 34899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+||++..-++.+...|..++.+.. +++||+++|||.|..... .........+..++.+++.||+.+.|.+.=|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 999999999999999999988765 469999999999987653 1223334445567789999999999999999
Q ss_pred HHHHHHhh
Q 030187 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~l~~~l~ 178 (181)
-++.+++.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99988775
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=2.3e-20 Score=133.11 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=96.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC---------------------------cc-------cccCccceeEEEEEEcCEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IV-------TTIPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~---------------------------~~-------~~~~t~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++++|||||+.+|.... .. ....|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999995210 00 112244455566777889999
Q ss_pred EEEcCCCCCccccccccccCccEEEEEEECCCccc---H---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----
Q 030187 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---- 134 (181)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---- 134 (181)
+||+||+.++...+...++.+|++++|+|+++... + ......+. ..... ..+|+++++||+|+....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777788999999999987421 1 11112221 22211 236899999999997421
Q ss_pred CHhHHHhh----hCCCcccCcceEEEEecccCCCCHH
Q 030187 135 NAAEITDK----LGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 ~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
..+++... +........+++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222222 2222223345789999999999986
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=7.8e-20 Score=141.06 Aligned_cols=159 Identities=18% Similarity=0.117 Sum_probs=102.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEEEE--------------c------------CE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVEY--------------K------------NI 61 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~--------------~------------~~ 61 (181)
.+.+++|+++|+.++|||||+..|.+.... ....|+...+..+.. . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 356799999999999999999999653111 112233322211110 0 25
Q ss_pred EEEEEEcCCCCCccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 030187 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--- 137 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--- 137 (181)
.+++||+||+++|..........+|++++|+|++++. .-+. ...+. .+... ...|+++++||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~-~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLM-ALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHH-HHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 7899999999988877666667789999999998543 1111 11111 12211 234689999999997643322
Q ss_pred -HHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 138 -EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++...+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 12221111 1123468999999999999999999988664
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=9e-20 Score=127.49 Aligned_cols=145 Identities=18% Similarity=0.120 Sum_probs=97.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC----------c--c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE----------I--V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~----------~--~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+++|+++|++++|||||+++|.... . . ....|+......+..++..+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5799999999999999999997531 0 0 1222444444556666788999999999988877
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcccCc
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRQR 151 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (181)
....+..+|++++|+|+...- ..........+.. .++| +++++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 777788999999999997532 2222222222332 3555 7899999998643221 1 22222222222334
Q ss_pred ceEEEEecccCCCCH
Q 030187 152 HWYIQSTCATSGEGL 166 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v 166 (181)
+++++.+||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 678999999999985
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=2.4e-19 Score=135.63 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=112.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCC----------cccc-ccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~ 80 (181)
+.++|+++|.||+|||||+|.+.+.+..- ...|.+.-...+++++-++.++||+|-.+ |... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999988542 23344544556777888999999999432 2211 245
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.+..+|.+++|+|++++ +......+..++.. .+.++++++||+|+.+. ...++....+......-...+.+.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 56789999999999655 55566666666555 68899999999998775 3333343333322222233478889
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 030187 159 CATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l 177 (181)
||++|.|++++|+.+.+..
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999887653
No 212
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.83 E-value=3.3e-19 Score=115.68 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=122.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccce-eEEEEEEc---CEEEEEEEcCCCCCc-cccccccccCccE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGF-NVETVEYK---NISFTVWDVGGQDKI-RPLWRHYFQNTQG 87 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~-~~~~~~~~---~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 87 (181)
+..|++|+|.-++|||+++.++..+... +..||+.- ....++.+ .-.++++||.|-..+ ..+-.+|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5589999999999999999999876643 44556553 33344442 357899999998877 5556788899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++||+..+++||+.+...-.++-+......+||++++||+|+.++ .++....+-.+++...+..+++++.+...+-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 9999999999999998876666666666677999999999999755 2222333333444455678899999999999
Q ss_pred HHHHHHHHHhh
Q 030187 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~l~~~l~ 178 (181)
|-|-.+...+.
T Consensus 165 epf~~l~~rl~ 175 (198)
T KOG3883|consen 165 EPFTYLASRLH 175 (198)
T ss_pred hHHHHHHHhcc
Confidence 99999887664
No 213
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=7e-20 Score=119.92 Aligned_cols=135 Identities=23% Similarity=0.279 Sum_probs=92.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCC----CCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
||+++|+.|+|||||+++|.+.... ...|..+.+ .+ ..+||||. +.+.........+||.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~-----~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEY-----YD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEe-----cc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 7999999999999999999987642 222322221 22 44999993 44554455555789999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
+++.+. ....+... ...|+|-|+||+|+. +....+...+.+.....+ .+|++|+.+|+|++++.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 876432 11112222 357899999999998 344444444445444343 35899999999999999987
Q ss_pred H
Q 030187 174 S 174 (181)
Q Consensus 174 ~ 174 (181)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=4.8e-19 Score=141.55 Aligned_cols=154 Identities=22% Similarity=0.262 Sum_probs=102.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccccc-----CccceeEEEEEE------cC-----E-----EEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY------KN-----I-----SFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~------~~-----~-----~~~i~D~~G~~ 72 (181)
.-++..|+++|++++|||||+++|.+....... ++++.++..... .. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 346778999999999999999999765543222 233333222111 00 1 26899999999
Q ss_pred CccccccccccCccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-------------- 135 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-------------- 135 (181)
.|...+...++.+|++++|+|+++ ++++..+. .+.. .++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999988888899999999999986 34443332 2222 4789999999999852100
Q ss_pred Hh-----------HHHhhhCCCccc----------CcceEEEEecccCCCCHHHHHHHHHH
Q 030187 136 AA-----------EITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~-----------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.. ++...+....+. ....+++++||++|.|++++++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 011111111111 23578999999999999999988764
No 215
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=5.1e-19 Score=126.18 Aligned_cols=152 Identities=24% Similarity=0.252 Sum_probs=97.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-----------------ccCc-------ccee-----------------EEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPT-------IGFN-----------------VETVE 57 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-----------------~~~t-------~~~~-----------------~~~~~ 57 (181)
+|+++|+.++|||||++++..+.+.. ..-| .+++ ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998643311 0001 1111 01233
Q ss_pred EcCEEEEEEEcCCCCCcccccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+..+.++|+||+++|.......+. .+|++++|+|+.... ......+..++.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 44678999999999988766544443 699999999986542 2333323333333 4688999999999876433
Q ss_pred HhH----HHhhhCCCcc---------------------cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 136 AAE----ITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 ~~~----~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
... +.+.+..... .....++|.+||.+|.|+++++..|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222 2233332111 122348999999999999998877643
No 216
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=4e-19 Score=142.67 Aligned_cols=156 Identities=20% Similarity=0.111 Sum_probs=104.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC---cc---cccCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE---IV---TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~---~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+-|+++|++++|||||+++|.+.. +. ....|++..+..+.. .+..+.+||+||+++|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999998633 21 124465555555544 34678999999999998877778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCC--cccCcceEEEEecccCCCCHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLH--SLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
|+|+++.-. ........++.. .++| +++|+||+|+.+....+.+..++... .....+.+++++||++|.|++
T Consensus 81 VVda~eg~~--~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGVM--AQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999875321 111111122222 2344 68999999997643332222222100 011123578999999999999
Q ss_pred HHHHHHHHHhh
Q 030187 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~l~~~l~ 178 (181)
++++.|.+...
T Consensus 156 ~L~~~L~~~~~ 166 (614)
T PRK10512 156 ALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHhhc
Confidence 99999987543
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=8.5e-19 Score=119.64 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=93.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcCEEEEEEEcCCCCC----------cccccccccc--
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~-- 83 (181)
.|+++|++|+|||||++.+.+.... ...++.+.+. ..+.... .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999954432 2333333222 2222233 899999999543 2333333333
Q ss_pred -CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEeccc
Q 030187 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 84 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (181)
+++++++++|.....+.... .....+.. .+.|+++++||+|+.................. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46789999998755322211 11122222 25789999999998654332222222211000 1223468899999
Q ss_pred CCCCHHHHHHHHHHHh
Q 030187 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l 177 (181)
++.|++++++.|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.80 E-value=5.5e-19 Score=135.93 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=106.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|+++|++++|||||+++|.+... . ....|++.....+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46679999999999999999999975210 0 1222444444455556778999999999998
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~ 148 (181)
..........+|++++|+|+.+.-.-+. ...+. ++.. .++| +++++||+|+.+..... ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 8777777788999999999975322121 22222 2222 3566 78899999987532222 22222222222
Q ss_pred cCcceEEEEecccCCC--------CHHHHHHHHHHHhh
Q 030187 149 RQRHWYIQSTCATSGE--------GLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~~~~~l~~~l~ 178 (181)
.....+++++||++|. ++.++++.|.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2234689999999983 67888888877653
No 219
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.79 E-value=6.5e-19 Score=125.25 Aligned_cols=159 Identities=24% Similarity=0.308 Sum_probs=103.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC----cccccCccceeEEEEEE-cCEEEEEEEcCCCCCcccc-----ccccccCccEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----WRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~-----~~~~~~~~d~~ 88 (181)
||+++|+.||||||+.+-+..+. .....+|..+....+.. ..+.+++||.||+..+... ....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999988887654 33456788888877764 5689999999999765443 46778999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhh----CC--CcccCcceEEEEecc
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKL----GL--HSLRQRHWYIQSTCA 160 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~Sa 160 (181)
|+|+|+.+.+ +.....++...+.. ...++..+.++++|+|+..+....+..+.. .. .......+.++.||-
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998443 44444444443332 233788999999999987643222222111 10 011111478999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
.+ ..+-++|..++..|..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TS-THHHHHHHHHHHTTST
T ss_pred cC-cHHHHHHHHHHHHHcc
Confidence 99 5899999999998763
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=99.79 E-value=3.4e-18 Score=131.67 Aligned_cols=158 Identities=20% Similarity=0.155 Sum_probs=103.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC-------Cc-----c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~-------~~-----~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
+..++|+++|++++|||||+++|.+. .. . ....|+......+..++..+.++||||+.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56689999999999999999999752 10 0 11224444444455567789999999999887
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNA-A----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+...-+ ....+.. +.. .++|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~-~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchh-HHHHHHH-HHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 77777788999999999997532211 1222222 222 356654 68999999753221 1 222222111112
Q ss_pred CcceEEEEecccCCC----------CHHHHHHHHHHHh
Q 030187 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~~~~~l~~~l 177 (181)
..+++++++||++|. ++.++++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 235789999999984 6788888887755
No 221
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.4e-18 Score=115.72 Aligned_cols=165 Identities=25% Similarity=0.387 Sum_probs=121.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc---CccEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGL 88 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~ 88 (181)
..++.+-.|+++|+.+||||+|+-+|..+.+....+++..+...+.......+++|.|||++.+.....++. ++.++
T Consensus 33 ~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 33 FRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred HhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 444555789999999999999999999998877777777788788888778999999999998877666666 79999
Q ss_pred EEEEECCC-cccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------------------
Q 030187 89 IFVVDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG--------------------- 144 (181)
Q Consensus 89 ilv~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~--------------------- 144 (181)
++|+|+.. ........+.+.+++-.. ....+|++++.||.|+.-+...+-+++.++
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999763 344455555555555544 245789999999999976533322222111
Q ss_pred --------------CCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 145 --------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 145 --------------~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
....+..++.|.++|++++ ++++.-+|+.+.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0011124577999999998 8999999987653
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.6e-18 Score=134.08 Aligned_cols=149 Identities=21% Similarity=0.293 Sum_probs=110.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-cccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcc------ccccccc--cC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~ 84 (181)
+..+|+++|+||+|||||+|++.+.. ...+.| |++.....+..++.+++++|.||-=... .....++ ..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 34679999999999999999999865 345555 6666677788888889999999932221 1122222 35
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|+++.|+|+++.++- .....++++ -+.|+++++|++|.... .+.+.+.+.++. |++++||
T Consensus 82 ~D~ivnVvDAtnLeRn---LyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERN---LYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHH---HHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 7999999999876443 333334444 48889999999998764 355666666665 5899999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++.+.+.+....
T Consensus 147 ~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 147 KRGEGLEELKRAIIELAES 165 (653)
T ss_pred ecCCCHHHHHHHHHHhccc
Confidence 9999999999999875543
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=3.9e-18 Score=116.62 Aligned_cols=161 Identities=17% Similarity=0.283 Sum_probs=107.5
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCC-cccccCccc----eeEEEEEEcCEEEEEEEcCCC----------CC
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQ----------DK 73 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~----~~~~~~~~~~~~~~i~D~~G~----------~~ 73 (181)
....+.....-|+++|.+|+|||||||.|.+.+ ......|+| +++ ++..+ .+.++|.||. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~-~~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDD-ELRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--EEecC-cEEEEeCCCcccccCCHHHHHH
Confidence 345666778899999999999999999999966 333333444 444 33333 2899999994 23
Q ss_pred cccccccccc---CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC
Q 030187 74 IRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (181)
Q Consensus 74 ~~~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~ 146 (181)
+......|+. +..++++++|+. .........+.+++.+ .++|+++++||+|....... ..+.+.+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r--~~~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDAR--HPPKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECC--CCCcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 3344444544 356888999984 3344444445555554 58999999999998875433 3334344433
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.... .+ ++.+|+.++.|++++...|.+.+..
T Consensus 168 ~~~~-~~-~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDD-QW-VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCcc-ce-EEEEecccccCHHHHHHHHHHHhhc
Confidence 2211 11 6678999999999999999887653
No 224
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=1e-17 Score=123.01 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=80.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cc-------------------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+|+++|++|+|||||++++.... .. ....++......+.+.+..+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999996422 00 0122444455567778899999999999988888
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+++.+|++++|+|+++........ .|..... .++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCccCC
Confidence 888899999999999998765443322 2222222 4689999999999864
No 225
>CHL00071 tufA elongation factor Tu
Probab=99.78 E-value=2e-18 Score=133.46 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=96.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|+++|++++|||||+++|.+..- . ....|+......+..++..+.++||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 46679999999999999999999986310 0 0122333334445556788999999999988
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+.- .........++.. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 877777788999999999997532 2222222222222 3567 7789999999764321 1 22222222122
Q ss_pred cCcceEEEEecccCCCC
Q 030187 149 RQRHWYIQSTCATSGEG 165 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (181)
....++++.+||.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22347899999999863
No 226
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.78 E-value=1.9e-18 Score=134.45 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=103.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC---------------------------cc-------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE---------------------------IV-------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~---------------------------~~-------~~~~t~~~~~~~~~~~ 59 (181)
.+.+++|+++|+.++|||||+.+|.... .. ....|+......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3677999999999999999999885310 00 1122555566667778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHH-------HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piivv~nK~D~~ 131 (181)
+..++++|+|||++|.......++.+|++++|+|+.+ ..|+ .....+. ++.. .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 8999999999999999999999999999999999975 2332 2222222 2222 355 578899999976
Q ss_pred CCC----C----HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 132 NAM----N----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 132 ~~~----~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+.. . .+++...+....+...+++|+++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 311 1 222333333223333457899999999999853
No 227
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=6.3e-18 Score=130.19 Aligned_cols=157 Identities=19% Similarity=0.140 Sum_probs=100.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+..++|+++|+.++|||||+++|.+.. .. ....|+......+..++..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4667999999999999999999996320 00 1233555555556566788999999999998
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~ 148 (181)
..........+|++++|+|+.+.-..+. ...+.. +.. .++| +++++||+|+.+..... ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHH-HHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 8776666788999999999975322221 122222 222 2555 45789999987542211 22222222222
Q ss_pred cCcceEEEEecccCCC--------CHHHHHHHHHH
Q 030187 149 RQRHWYIQSTCATSGE--------GLYEGLDWLSN 175 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~~~~~l~~ 175 (181)
....++++++||.+|. ++.++++.|.+
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 2234789999999875 24455555544
No 228
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=1.1e-17 Score=118.97 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=76.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc----------------------ccCccceeEEEEE-----EcCEEEEEEEcCCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT----------------------TIPTIGFNVETVE-----YKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~----------------------~~~t~~~~~~~~~-----~~~~~~~i~D~~G~ 71 (181)
+|+++|++++|||||+++|....... ...++......+. ...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 68999999999999999997533110 0012222222222 23478999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+|......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987665533 233333322 358999999999975
No 229
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=1.1e-17 Score=137.09 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=89.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
.++..+|+++|+.++|||||+++|.... .. ....|+......+.+.+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3456899999999999999999997421 00 13346666667788889999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+|...+..+++.+|++++|+|+++....+.... |..... .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHh----cCCCEEEEEECCCCCCC
Confidence 999888999999999999999987766554433 333322 47899999999998764
No 230
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.77 E-value=6e-19 Score=120.46 Aligned_cols=123 Identities=28% Similarity=0.447 Sum_probs=78.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE---cCEEEEEEEcCCCCCcccccccc---ccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHY---FQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~---~~~~d~~il 90 (181)
.-.|+++|+.|+|||+|+.+|..+.......+...+. .+.. .+..+.++|+|||++.+...... ..++.++||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 4579999999999999999999997665555543333 2222 34579999999999988765444 788999999
Q ss_pred EEECCC-cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHH
Q 030187 91 VVDSND-RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEIT 140 (181)
Q Consensus 91 v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~ 140 (181)
|+|++. ...+....+.+.+++.... ...+|+++++||.|+........+.
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik 134 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIK 134 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHH
Confidence 999873 3455555566655554322 3578999999999998754443333
No 231
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.77 E-value=3.1e-17 Score=129.71 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=83.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc--CCcc-----------------------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV-----------------------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++++|||||+++|.. +... ....++......+.+++..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999963 1100 01113334445677888999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|+.+|......+++.+|++++|+|+++.-.. .....+. .... .++|+++++||+|....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~-~~~~---~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLME-VCRL---RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHH-HHHh---cCCCEEEEEECCccccc
Confidence 9999988777788999999999999764322 2223332 2222 57999999999998754
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.77 E-value=1.1e-17 Score=122.18 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=86.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC--cc-----------------------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE--IV-----------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
-+|+++|++|+|||||+++|.... .. ....++......+++.+.++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999996421 00 01123344455778889999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG 144 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~ 144 (181)
+|.......++.+|++++|+|+++.... ....+| ..... .++|+++++||+|...... .+++...++
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~-~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLF-EVCRL---RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHH-HHHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 9887777788999999999999765332 222333 23322 4789999999999876543 344444443
No 233
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=1.1e-18 Score=134.62 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=123.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE---EEEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+..++|+++|+.|+||||||..+...++.+..|..-..+ ..+....+...+.|++..++-+......++.||++.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 34577999999999999999999999998876555222111 223334566899999988877777677789999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCH--hH-HHhhh-CCCcccCcceEEEEecccCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNA--AE-ITDKL-GLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~--~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~ 163 (181)
++|+.+++++++.+...|.+++++... .++|+|+||||+|....... +. +...+ ....++ ..++|||++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE----tciecSA~~~ 160 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE----TCIECSALTL 160 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH----HHHhhhhhhh
Confidence 999999999999999999999998763 46899999999998765433 11 11111 111112 3679999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030187 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~ 178 (181)
.++.|+|....+++.
T Consensus 161 ~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVI 175 (625)
T ss_pred hhhHhhhhhhhheee
Confidence 999999998877665
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.76 E-value=1.1e-17 Score=130.68 Aligned_cols=146 Identities=21% Similarity=0.150 Sum_probs=98.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC------c-------------ccccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------I-------------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~------~-------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+..++|+++|++++|||||+++|.... . .....|+......+..++..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4567899999999999999999998521 0 01122444445556667889999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+...-+ ....+.. +.. .++| +++++||+|+.+.+.. + ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILL-AKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHH-HHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 887777788999999999997543222 2223322 222 3566 7889999999763221 1 22222222222
Q ss_pred cCcceEEEEecccCCC
Q 030187 149 RQRHWYIQSTCATSGE 164 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~ 164 (181)
...+++++.+|+.+|.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 3346789999998874
No 235
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2e-17 Score=120.37 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=111.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCEEEEEEEcCCCC-----Ccccc----cccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPL----WRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~----~~~~~~ 83 (181)
+...|+|.|.||+|||||++++.+.+.. ..-.|-+++...+..+...+|++||||-- +.+.+ ....-+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 5689999999999999999999887642 22347778888899999999999999932 11111 112223
Q ss_pred CccEEEEEEECCCc--ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 84 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 84 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
-.++++|+||++.. -+.+.....|.++-.. .+.|+++|+||.|..+.+..+++.......... ....+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~----~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE----EPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc----cccceeee
Confidence 47889999999854 4667777777776554 348999999999999877666665544332221 24467888
Q ss_pred CCCCHHHHHHHHHHH
Q 030187 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~ 176 (181)
.+.+++.+-..+...
T Consensus 320 ~~~~~d~~~~~v~~~ 334 (346)
T COG1084 320 KGCGLDKLREEVRKT 334 (346)
T ss_pred ehhhHHHHHHHHHHH
Confidence 888888877776655
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.2e-17 Score=128.66 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=104.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
+..++|+++|++++|||||+++|.+... . ....|+......+..++..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5679999999999999999999976210 0 12224444444555567889999999999887
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+.-. ........++.. .++|.+ +++||+|+.+... .+ ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~--~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM--PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc--hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999975422 222222222332 357765 6899999975322 11 222222222222
Q ss_pred CcceEEEEecccCCC----------CHHHHHHHHHHHh
Q 030187 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~~~~~l~~~l 177 (181)
..+.+++.+||+++. ++..+++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345789999999875 5677888777654
No 237
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=119.79 Aligned_cols=148 Identities=31% Similarity=0.416 Sum_probs=107.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCE-EEEEEEcCCCCCcccc-------ccccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRHYF 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~~~~ 82 (181)
..+.+||-||+|||||++.+...+ |++..|+++ ++.+++. .+.+-|.||--+-... ...++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 478999999999999999998755 445555555 4555554 4999999994332221 34456
Q ss_pred cCccEEEEEEECCCc---ccHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEE
Q 030187 83 QNTQGLIFVVDSNDR---DRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 156 (181)
.+|+.+++|+|++.+ ..++.....+.++-. +..+.+.|.++|.||+|+++.+.. +++.+.+... .++
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~ 345 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVV 345 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEE
Confidence 789999999999987 788887776666533 345578899999999998643222 3333333222 588
Q ss_pred EecccCCCCHHHHHHHHHHH
Q 030187 157 STCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~ 176 (181)
++||++++|+.++++.|.+.
T Consensus 346 pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EeeeccccchHHHHHHHhhc
Confidence 99999999999999887654
No 238
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=1.3e-17 Score=129.76 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=102.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--Cc-------------------------c-------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EI-------------------------V-------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~-------------------------~-------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|+.++|||||+.+|... .. . ....|+......++..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356789999999999999999998641 00 0 1122555556667778
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~ 132 (181)
+..++++|+|||.+|.......+..+|++++|+|+.+.. .+ ......+.. +.. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHH---cCCCeEEEEEEcccccc
Confidence 899999999999999888888889999999999997542 11 112222222 222 3544 789999999532
Q ss_pred ----CCCHh----HHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 133 ----AMNAA----EITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ----~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
....+ ++...+........+++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12222 2333333333333468899999999999864
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=4.1e-17 Score=119.42 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=86.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC--Cc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 19 RILMVGLDAAGKTTILYKLKLG--EI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
+|+++|++++|||||+++|... .. . ....|+......+.+.+..+.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999631 10 0 1122455556678888999999999999999888
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~ 145 (181)
+...++.+|++++|+|+.+...-+. ...+... .. .++|+++++||+|+.+... .+++...++.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~-~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQA-DR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 8889999999999999976432222 2223222 22 4689999999999875432 3444444443
No 240
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=1.6e-17 Score=116.71 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=95.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc-ccCccce-----eEEEEEEc-CEEEEEEEcCCCCCccccc-----cccccC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-----NVETVEYK-NISFTVWDVGGQDKIRPLW-----RHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~i~D~~G~~~~~~~~-----~~~~~~ 84 (181)
+++|+++|++|+|||||+|.|.+..... ..++.+. ....+... ...+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3789999999999999999998855322 1111111 11112111 2478999999975432222 223567
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCC------ccc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLH------SLR 149 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---------~~~~~~~~~~~------~~~ 149 (181)
+|+++++.+ +++......+.+.+.. .+.|+++|+||+|...+.. .+++.+.+... ...
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 899888743 2455555555555554 2578999999999843211 11211111100 001
Q ss_pred CcceEEEEeccc--CCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~v~~~~~~l~~~l~~ 179 (181)
....++|.+|+. .+.|+..+.+.+...|.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 123468889998 579999999999988764
No 241
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-19 Score=121.20 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=121.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc---CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
++++|+|.-|+|||+++.++....+. .+..|++..+. ...+. -+++++||+.|+++|-.+..-+++.+++.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 79999999999999999999887765 34556665442 12332 26789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||++++-+|+....|..++.... +..-.|+++..||||.......+ .+...-....+ ..++++|+|.+.+
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf----~gwtets~Kenkn 181 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF----EGWTETSAKENKN 181 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc----cceeeeccccccC
Confidence 99999999999999988875543 33457899999999976542222 12111111112 1578999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
++|+...+++++.
T Consensus 182 i~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 182 IPEAQRELVEKIL 194 (229)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999876
No 242
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=135.57 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=103.4
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC--cc----------------------------------cccCc
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPT 48 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~----------------------------------~~~~t 48 (181)
+.+++.+...+..++|+++|++++|||||+++|.... .. ....|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 4566677777888999999999999999999997532 00 01113
Q ss_pred cceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
+...+..+...+..+.++||||+++|.......+..+|++++|+|+.+...-+.... + .++... ...|+++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~-~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-S-FIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-H-HHHHHh--CCCeEEEEEEec
Confidence 334444566677889999999999887666667789999999999965422111111 1 111111 236789999999
Q ss_pred CCCCCC--CHhHHHhhhCC--CcccCcceEEEEecccCCCCHHH
Q 030187 129 DLPNAM--NAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 129 D~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+.+.. ..+++..++.. ......+.+++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 987522 12222222210 01111235688999999999874
No 243
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=7e-18 Score=132.24 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=99.0
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC--cc----------------------------------cccCccceeEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPTIGFNVETV 56 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~----------------------------------~~~~t~~~~~~~~ 56 (181)
..+..++|+++|++++|||||+++|.... .. ....|+...+..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 45677999999999999999999996431 00 0112344445556
Q ss_pred EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..++..+.++||||+++|.......+..+|++++|+|+.+.-.-+.... .+...+. ..|+++++||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchh
Confidence 6677899999999999887666666799999999999875321111111 1122211 247899999999874321
Q ss_pred --HhHHHhhhCC--Cccc-CcceEEEEecccCCCCHHHH
Q 030187 136 --AAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 --~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~v~~~ 169 (181)
..++...+.. .... ....+++++||++|.|+++.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223222210 0011 12467999999999999764
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=8.9e-18 Score=129.66 Aligned_cols=147 Identities=18% Similarity=0.121 Sum_probs=95.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC--cc----------------------------------cccCccceeEEEEEEcCE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPTIGFNVETVEYKNI 61 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~--~~----------------------------------~~~~t~~~~~~~~~~~~~ 61 (181)
++|+++|++++|||||+++|.... .. ....|++.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999995321 00 011244455556667788
Q ss_pred EEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030187 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI 139 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~ 139 (181)
++.++||||+++|.......+..+|++++|+|+...-.-+.... + .++... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-S-YIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-H-HHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999998777777889999999999875422121111 1 112211 1346899999999875321 1122
Q ss_pred HhhhCC--CcccCcceEEEEecccCCCCHHH
Q 030187 140 TDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
...+.. ......+.+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 01111245799999999999875
No 245
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=3.6e-17 Score=117.85 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=103.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccce-eEEEEEEcCEEEEEEEcCCCCC------------cccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGF-NVETVEYKNISFTVWDVGGQDK------------IRPL 77 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~-~~~~~~~~~~~~~i~D~~G~~~------------~~~~ 77 (181)
..+...|+|+|+||+|||||.|++.+.+...... |..- ....+..+...+.++||||--. +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4677899999999999999999999988543222 2222 2233445678999999999321 1111
Q ss_pred ccccccCccEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---------------C--HhH
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------N--AAE 138 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---------------~--~~~ 138 (181)
....+.+||.+++|+|+++.... ..+...+..+ .++|-++|.||.|..... . .-+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 22345789999999999864322 2222223332 578899999999976420 1 223
Q ss_pred HHhhhCCCcc-----cCcce----EEEEecccCCCCHHHHHHHHHHHhh
Q 030187 139 ITDKLGLHSL-----RQRHW----YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~-----~~~~~----~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+++++..... .-+++ .+|.+||++|+|++++-++|..+..
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 3333332210 01122 3788999999999999999987654
No 246
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.6e-17 Score=124.61 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=112.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC-----------cc-------cccCccceeEEEEEEc---CEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----------IV-------TTIPTIGFNVETVEYK---NISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~-----------~~-------~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~ 73 (181)
.+--++.|+-+...|||||..+|..-. +. +...|+......+.+. .+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 445689999999999999999995311 11 2223444433344343 49999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCcccC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRQ 150 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~ 150 (181)
|.......+.-|+++++|+|++..-.-+.....+..+. .+..+|.|+||+|++.+...+ ++...+.+...
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~-- 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA-- 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc--
Confidence 99999888899999999999986544455555554443 367799999999999865432 23333333322
Q ss_pred cceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 151 RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+.+|||+|.|++++++++++.+.
T Consensus 211 ---~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 ---EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ---ceEEEEeccCccHHHHHHHHHhhCC
Confidence 5678999999999999999999875
No 247
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=8e-17 Score=125.30 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=104.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC------C----c--c-------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG------E----I--V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~------~----~--~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|+++|++++|||||+++|.+. . + . ....|++.....++.++..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 457799999999999999999999621 1 0 0 1223555555566667788999999999988
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-hHHH----hhhCCCcc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-AEIT----DKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-~~~~----~~~~~~~~ 148 (181)
..........+|++++|+|+.+.-. ........++.. .++| +++++||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~--~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM--PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7776666678999999999875422 222222223332 4677 5788999998753221 1121 22211112
Q ss_pred cCcceEEEEeccc---CCCC-------HHHHHHHHHHHhh
Q 030187 149 RQRHWYIQSTCAT---SGEG-------LYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------v~~~~~~l~~~l~ 178 (181)
....++++.+|+. +|.| +.++++.|.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2235788888875 4555 6788888777653
No 248
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9.1e-18 Score=125.44 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=106.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC---------------------C---c----------ccccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG---------------------E---I----------VTTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~---------------------~---~----------~~~~~t~~~~~~~~~~~ 59 (181)
.+.+++++++|+..+|||||+-+|... . + .+...|++.....++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 367899999999999999999999531 0 0 12334677777788888
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHH-----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
...+.++|+||+.+|...+.....+||+.|+|+|+.+.+.-.. ....-.-++... .-..+|+++||+|..+..
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 9999999999999999999999999999999999975531111 111111111111 134589999999998742
Q ss_pred --CHhHHHhhh----CCCcccCcceEEEEecccCCCCHHH
Q 030187 135 --NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 135 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
..+++..+. ....+...+++|+++|+..|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222332222 2333344568899999999999854
No 249
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.73 E-value=2.6e-16 Score=128.82 Aligned_cols=114 Identities=20% Similarity=0.141 Sum_probs=85.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--c------c-------------cccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I------V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
.+-.+|+++|++++|||||+++|.... . . ....|+......+.+.+..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 445699999999999999999996321 1 0 112345555667888899999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+...+...++.+|++++|+|+.+....+.. ..+.. +.. .++|+++++||+|+...
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQ-ANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHH-HHH---cCCCEEEEEECCCCCCC
Confidence 888888889999999999999865444322 22322 222 46899999999998753
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.73 E-value=1.7e-16 Score=125.66 Aligned_cols=113 Identities=23% Similarity=0.278 Sum_probs=81.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc--CCcc-----------------------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV-----------------------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++++|||||+++|.. +... ....++......+++.+..+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999852 1110 00113333445677788999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
|+.+|.......++.+|++++|+|+++. +......+.+.... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9998888777788999999999999753 22222222233333 4789999999999863
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.1e-16 Score=121.65 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=109.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccceeEEEEEEc---CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
-++.-|.++|+...|||||+..+.........+ |-.+.-+.+... ...+.++|||||+-|..++.....-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 356789999999999999999998776543322 333333445543 35899999999999999999888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh--hhCCC-cccCcceEEEEecccCCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLH-SLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~ 165 (181)
+||+++++. +.-....-.+.++. .+.|++++.||+|.++........+ +.++. ..-.....++++||++|+|
T Consensus 83 ILVVa~dDG--v~pQTiEAI~hak~---a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 83 ILVVAADDG--VMPQTIEAINHAKA---AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEccCC--cchhHHHHHHHHHH---CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999753 21111111122333 6899999999999986544332222 12221 1123457899999999999
Q ss_pred HHHHHHHHHH
Q 030187 166 LYEGLDWLSN 175 (181)
Q Consensus 166 v~~~~~~l~~ 175 (181)
++++++.+.-
T Consensus 158 i~eLL~~ill 167 (509)
T COG0532 158 IDELLELILL 167 (509)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 252
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.72 E-value=1e-16 Score=119.94 Aligned_cols=134 Identities=27% Similarity=0.412 Sum_probs=103.6
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~ 115 (181)
.||.|+....+..+++.+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..++....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 3577777778888899999999999999999999999999999999999863 567778888888888877
Q ss_pred CCCCeEEEEEeCCCCCCC------------------CCHhHHH----hhhCCC-cccCcceEEEEecccCCCCHHHHHHH
Q 030187 116 LRDAVLLVFANKQDLPNA------------------MNAAEIT----DKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~------------------~~~~~~~----~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
..+.|+++++||.|+... ...+.+. ..+... ....+.+..+.++|.+-.+++.+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 789999999999996431 1111111 111110 01235667778999999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
+.+.|..
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 9887764
No 253
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.72 E-value=1.2e-16 Score=120.53 Aligned_cols=133 Identities=26% Similarity=0.411 Sum_probs=103.2
Q ss_pred CccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 030187 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (181)
||.|+....+...+..+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..++.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 467777777888889999999999999999999999999999999999863 4678888889999888777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHH
Q 030187 117 RDAVLLVFANKQDLPNA-----------------MNAAE----ITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~~-----------------~~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
.+.|+++++||.|+... ..... +...+....- ..+.+..+.|+|.+-.++..+|+.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 89999999999997531 11111 1122211111 2245677789999999999999998
Q ss_pred HHHhhc
Q 030187 174 SNNIAN 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.|.+
T Consensus 330 ~~~I~~ 335 (342)
T smart00275 330 KDIILQ 335 (342)
T ss_pred HHHHHH
Confidence 887764
No 254
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.71 E-value=1.3e-16 Score=113.54 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=77.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC--cc-----------------cccCccceeEEEEEEc----------CEEEEEEEcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE--IV-----------------TTIPTIGFNVETVEYK----------NISFTVWDVG 69 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~--~~-----------------~~~~t~~~~~~~~~~~----------~~~~~i~D~~ 69 (181)
+|+++|+.++|||||+.+|.... .. ....|+......+.+. +..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 79999999999999999996432 00 0111322222222222 6889999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|+.+|......+++.+|++++|+|+.+....+.. ..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999999999999999999999876555432 22333322 367899999999976
No 255
>COG2262 HflX GTPases [General function prediction only]
Probab=99.71 E-value=5.2e-16 Score=116.16 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=109.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEc-CEEEEEEEcCCCCC---------cccccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQDK---------IRPLWR 79 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~---------~~~~~~ 79 (181)
....-..|.++|-+|+|||||+|.|.+.... ....|.+.+...+... +..+.+-||.|--+ |++..
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL- 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL- 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH-
Confidence 3446689999999999999999999876532 2234666666666665 57899999999322 33322
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEe
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.....+|.++.|+|+++++....+.. -.+++.......+|+++|.||+|...... ...+.... + ..+.+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~i 336 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFI 336 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEE
Confidence 23467999999999999954444443 44555555556799999999999775533 11111111 1 35679
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++|.|++++.+.|.+.+.
T Consensus 337 SA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 337 SAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EeccCcCHHHHHHHHHHHhh
Confidence 99999999999999998775
No 256
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=2.4e-16 Score=119.50 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=115.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-----------c-------ccccCccceeEEEEEE-----cCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-----------I-------VTTIPTIGFNVETVEY-----KNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-----------~-------~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~ 72 (181)
+--+..++-+-..|||||..|+.... . .+..-|+..+..++.+ ..+.++++|||||.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 34578899999999999999996421 1 1223344444333333 45899999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccc
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 149 (181)
+|.-..+..+.-|.++++|+|++..=.-+.+...+..+-. +.-++.|+||+|++..+.. .++.+.+++...
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~- 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS- 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc-
Confidence 9998888888889999999999877666777777766644 4558999999999987543 344555555433
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..+.+|||+|.||+++++.|++.+..
T Consensus 162 ----dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 ----DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ----hheeEecccCCCHHHHHHHHHhhCCC
Confidence 35689999999999999999998763
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=1.8e-16 Score=123.29 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=104.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEE-----------------EE-----------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETV-----------------EY----------- 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~-----------------~~----------- 58 (181)
.++..++|.++|+..+|||||+..|.+.... ...-|+...+... ..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4567799999999999999999999864321 1111222211111 00
Q ss_pred -----cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 59 -----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 59 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
-...+.++|+||+++|..........+|++++|+|+.+...-......+. ++... .-.|+++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCH
Confidence 02368999999999998887777889999999999986321111122221 22221 12468999999999764
Q ss_pred CCHhHHHhhhCC--CcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 134 MNAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
...++...++.. ......+.+++++||++|.|++++++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 332222222110 001124568999999999999999999987554
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=9.1e-16 Score=98.86 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=70.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEEEcCEEEEEEEcCCCCCcc---------ccccccccCc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNT 85 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~ 85 (181)
+|+++|.+|+|||||+|.|.+.... ....|....+..+...+..+.++||||-.... ......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999985421 12234445455566788889999999954321 1123334789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
|++++|+|++++ .......+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~--~~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP--ITEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH--SHHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCC--CCHHHHHHHHHHh----cCCCEEEEEcC
Confidence 999999997652 2222222222222 58999999998
No 259
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=8.8e-16 Score=114.48 Aligned_cols=76 Identities=28% Similarity=0.417 Sum_probs=55.0
Q ss_pred EEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEE-------------------E-EcCEEEEEEEcCCC-
Q 030187 20 ILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETV-------------------E-YKNISFTVWDVGGQ- 71 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~G~- 71 (181)
|+++|.|++|||||+|+|.+.. +.+..|+++..+... + ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999998875 234455555544311 1 13378999999997
Q ss_pred ---CCccccccc---cccCccEEEEEEECC
Q 030187 72 ---DKIRPLWRH---YFQNTQGLIFVVDSN 95 (181)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~ilv~d~~ 95 (181)
+++..+... .+++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444443333 589999999999986
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.69 E-value=2.1e-15 Score=109.65 Aligned_cols=148 Identities=24% Similarity=0.258 Sum_probs=103.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCEEEEEEEcCCCC----Ccc---ccccccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQD----KIR---PLWRHYF 82 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----~~~---~~~~~~~ 82 (181)
..+++++|.|++|||||++.|.+.+ |++..+-+++ +++++.++|+.|+||-- ..+ .......
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~----l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce----EeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3589999999999999999998754 3444444444 77889999999999832 222 3355678
Q ss_pred cCccEEEEEEECCCccc-HHHHHHHHHHH----------------------------------------hcCC-------
Q 030187 83 QNTQGLIFVVDSNDRDR-VVEARDELHRM----------------------------------------LNED------- 114 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~------- 114 (181)
++||++++|+|+..... .+.+...+.+. +.+.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999985543 22332222111 1100
Q ss_pred -----------------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 115 -----------------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 -----------------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
...-+|.+.|.||.|+...+....+.+.. ..+.+||+.+.|++++.+.|.+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 00146899999999998854444444433 467899999999999999998876
Q ss_pred h
Q 030187 178 A 178 (181)
Q Consensus 178 ~ 178 (181)
.
T Consensus 289 ~ 289 (365)
T COG1163 289 G 289 (365)
T ss_pred C
Confidence 3
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=1e-15 Score=107.49 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=98.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccc-----ccCccceeEEEEEEcCEEEEEEEcCCCCCccc-------c----cccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~----~~~~ 81 (181)
.+|+++|.+|+|||||+|.+.+..... ...|...........+..+.++||||-.+... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876432 12355555566667788999999999654321 0 1223
Q ss_pred ccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCcceEEEE
Q 030187 82 FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (181)
...+|++++|+++.+. +.......++.+.+... .-.+++++.|+.|.......++...... ....+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4678999999998752 12223333444433321 1247899999999776543333322111 0011111111222
Q ss_pred e-----cccCCCCHHHHHHHHHHHhhc
Q 030187 158 T-----CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~-----Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
. |+..+.+++++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2 256788899999998887763
No 262
>PRK12739 elongation factor G; Reviewed
Probab=99.67 E-value=1.2e-15 Score=124.92 Aligned_cols=114 Identities=20% Similarity=0.123 Sum_probs=85.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC-----c----------------ccccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----I----------------VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~-----~----------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
.+..+|+++|++++|||||+++|.... . .....|+......+.+++..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 455789999999999999999996420 0 0123366666677888899999999999998
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|...+...++.+|++++|+|+.+.-.-+.. ..+. .+.. .++|+++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~-~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWR-QADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECCCCCCC
Confidence 888888889999999999999765332222 2222 2222 46889999999998753
No 263
>PRK12740 elongation factor G; Reviewed
Probab=99.66 E-value=3.6e-15 Score=122.07 Aligned_cols=106 Identities=20% Similarity=0.170 Sum_probs=79.8
Q ss_pred EcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcCEEEEEEEcCCCCCcccccccc
Q 030187 23 VGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 23 ~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 81 (181)
+|++++|||||+++|.... .. ....|++.....+.+.+..+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 6999999999999994321 00 12335566667788889999999999999888888888
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+|++++|+|+++....+... .+..... .++|+++++||+|....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 89999999999998765544332 2333222 46899999999998753
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.7e-15 Score=114.30 Aligned_cols=164 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccC----ccceeEEEEEEcCEEEEEEEcCCCCC-cccc--------cccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQDK-IRPL--------WRHY 81 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~~~~ 81 (181)
+..++|+++|+||+|||||+|.|...+..-..| |.+.-...++..++.+.+.||+|-.+ .... ....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 466999999999999999999999988653333 44444566778899999999999655 1111 2234
Q ss_pred ccCccEEEEEEECCC--cccHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCCC-HhH-HHhhhCCCcccCcc
Q 030187 82 FQNTQGLIFVVDSND--RDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAMN-AAE-ITDKLGLHSLRQRH 152 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~-----~~~~~~~piivv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~ 152 (181)
+..+|++++|+|+.. -++-..+...+...-. .+.+.+.|++++.||+|+..+.. ... ....... ...+..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 567999999999932 2222222222222111 13445688999999999876521 111 0000000 111122
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 153 WYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 153 ~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
....++|+++++|++++.+.+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 234569999999999999999887654
No 265
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=3.1e-15 Score=122.48 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=83.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc--CCc-------------------ccccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEI-------------------VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~-------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
..+-.+|+++|++++|||||+++|.. +.. .....|+......+.+.+..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34556999999999999999999963 110 012234555556677888999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+|.......++.+|++++|+|+...-..+.. ..+.. +.. .++|.++++||+|....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~-~~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQ-ADK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHH-HHH---cCCCEEEEEECCCCCCC
Confidence 8877777778899999999998754322222 22222 222 46889999999998753
No 266
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=4.1e-15 Score=109.30 Aligned_cols=113 Identities=15% Similarity=0.221 Sum_probs=72.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEE--EEEcC--EEEEEEEcCCCCCccc----
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRP---- 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~---- 76 (181)
-.++|+++|++|+|||||+|+|++..+.. ..+|....... +...+ +++.+|||||-.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 35899999999999999999999877532 13344443332 33333 6799999999432211
Q ss_pred ----------------------ccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 77 ----------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 77 ----------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+...+. .+|+++++++.+. ..+......+...+. .++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 1112223 4788888888764 233333232333333 2589999999999865
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 158 ~ 158 (276)
T cd01850 158 P 158 (276)
T ss_pred H
Confidence 3
No 267
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=6.4e-15 Score=107.89 Aligned_cols=155 Identities=25% Similarity=0.271 Sum_probs=103.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEEEEEcCEEEEEEEcCCCCCccc----c---ccccccC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP----L---WRHYFQN 84 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~ 84 (181)
.|.+||.|++|||||++.+...+ |++..|..++-.. ...-.|.+-|.||--+-.+ + ...++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 67899999999999999997654 4556666665322 3445799999999533222 1 3455678
Q ss_pred ccEEEEEEECCCcc---cHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 85 TQGLIFVVDSNDRD---RVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 85 ~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+.+++.|+|++..+ ..+.......++... ..+.++|.++|+||+|+... +..++..+.+..... ....++ +|
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~--~~~~~~-IS 314 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG--WEVFYL-IS 314 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC--CCccee-ee
Confidence 99999999998544 345544444443332 44568899999999996544 344444444432111 111232 99
Q ss_pred ccCCCCHHHHHHHHHHHhhc
Q 030187 160 ATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~ 179 (181)
|.++.|++++...+.+.+.+
T Consensus 315 a~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 315 ALTREGLDELLRALAELLEE 334 (369)
T ss_pred hhcccCHHHHHHHHHHHHHH
Confidence 99999999999998887653
No 268
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1e-14 Score=112.44 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=111.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.++.-|.++|+...|||||+..|.+...... ..|-.+--+.+.. .+-.+++.|||||.-|..++.....-.|.+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4778899999999999999999987665322 1233333333333 45789999999999999999988899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEecccCCCCH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 166 (181)
|+.+.|.=--+ ..+.+++....+.|+++.+||+|.+.... +.+.+++..... -+-++.++++||++|.|+
T Consensus 231 VVAadDGVmpQ-----T~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVMPQ-----TLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCccHh-----HHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99986532112 22223333337899999999999886644 333333332222 234678999999999999
Q ss_pred HHHHHHHHH
Q 030187 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~l~~ 175 (181)
+.+.+.+.-
T Consensus 305 ~~L~eaill 313 (683)
T KOG1145|consen 305 DLLEEAILL 313 (683)
T ss_pred HHHHHHHHH
Confidence 999887764
No 269
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=8.1e-15 Score=104.61 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=105.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCcccee-EEEEEEcCEEEEEEEcCCCCC-------ccccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFN-VETVEYKNISFTVWDVGGQDK-------IRPLWRH 80 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~-~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 80 (181)
...+.+++|+++|.+|+||||+||.|+.+... ....+..+. +....++.-.+.+||+||.++ ++.....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 34568899999999999999999999965432 222222222 222333456899999999665 6677888
Q ss_pred cccCccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHH-hhhC-C
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEIT-DKLG-L 145 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~-~~~~-~ 145 (181)
++...|.++++.++.++. -... ..+.+++... -+.++++++|.+|...+. ..++.. +..+ .
T Consensus 114 ~l~~~DLvL~l~~~~dra--L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 114 YLPKLDLVLWLIKADDRA--LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HhhhccEEEEeccCCCcc--ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 899999999999987653 2222 2333333322 237899999999976541 111111 1000 0
Q ss_pred CcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
...-+.-.|++..|...+.|++++...+++.+.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 000011225667788999999999999998875
No 270
>PRK13768 GTPase; Provisional
Probab=99.57 E-value=1.4e-14 Score=105.36 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=73.2
Q ss_pred EEEEEEEcCCCCCc---cccccccccC-----ccEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 61 ISFTVWDVGGQDKI---RPLWRHYFQN-----TQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~D~~G~~~~---~~~~~~~~~~-----~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
..+.+||+||+.+. +..+..+.+. ++++++++|+.......... .++........ .+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 36899999997653 3333333332 88999999996543332222 22222111111 478999999999998
Q ss_pred CCCCHhHHHhhhCC--------C---------------ccc--CcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 132 NAMNAAEITDKLGL--------H---------------SLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+....+...+.+.. . .++ ....+++++|++++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76544443332221 0 011 12247889999999999999999988764
No 271
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.6e-14 Score=106.20 Aligned_cols=146 Identities=20% Similarity=0.187 Sum_probs=104.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC------------------------c------------ccccCccceeEEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------------------I------------VTTIPTIGFNVETVE 57 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~------------------------~------------~~~~~t~~~~~~~~~ 57 (181)
.+..++++.+|...-||||||-||.... + .+...|+++.|..|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999996421 0 123447888888888
Q ss_pred EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHH---HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.++.+|.+-|||||++|-..+-.....||++|+++|+ +..+.... ..+..++. -..+++.+||+|+.+..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYS 155 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccC
Confidence 8999999999999999999888888999999999999 33332222 23333333 35689999999998753
Q ss_pred --CHhHHHhhhCC--CcccCcceEEEEecccCCCCH
Q 030187 135 --NAAEITDKLGL--HSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 135 --~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v 166 (181)
..+++...+.. ..+......+++.||..|+||
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 22233332221 111223347899999999997
No 272
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.56 E-value=3.1e-14 Score=106.00 Aligned_cols=135 Identities=26% Similarity=0.449 Sum_probs=102.1
Q ss_pred ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc----------cHHHHHHHHHHHhcCC
Q 030187 45 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNED 114 (181)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~ 114 (181)
..+|.|+....+..++..+.++|++||..-+..|.+.+.+++++++|+++++-+ ...+....+..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 356889999999999999999999999999999999999999999999986422 3444556777888888
Q ss_pred CCCCCeEEEEEeCCCCCCC-----------------CCHhHH----HhhhCCCc-ccCcceEEEEecccCCCCHHHHHHH
Q 030187 115 ELRDAVLLVFANKQDLPNA-----------------MNAAEI----TDKLGLHS-LRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 115 ~~~~~piivv~nK~D~~~~-----------------~~~~~~----~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
...+.++++++||.|+..+ ...++. ...+.... ...+.+..+.|+|.+-.+|+.+|..
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 8889999999999998642 111111 11111111 1114566777899999999999999
Q ss_pred HHHHhhc
Q 030187 173 LSNNIAN 179 (181)
Q Consensus 173 l~~~l~~ 179 (181)
..+.|..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 9887764
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.56 E-value=1.3e-13 Score=105.73 Aligned_cols=78 Identities=29% Similarity=0.396 Sum_probs=53.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-------cccCccceeEEEEE--------------------EcCEEEEEEEcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETVE--------------------YKNISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t~~~~~~~~~--------------------~~~~~~~i~D~~G 70 (181)
++|+++|.|++|||||+|+|.+.... +..|+.+....... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999876542 22344443221100 1236789999999
Q ss_pred CC----Cccccccc---cccCccEEEEEEECC
Q 030187 71 QD----KIRPLWRH---YFQNTQGLIFVVDSN 95 (181)
Q Consensus 71 ~~----~~~~~~~~---~~~~~d~~ilv~d~~ 95 (181)
.. +...+... .++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 33333333 388999999999986
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=9.7e-15 Score=91.96 Aligned_cols=137 Identities=21% Similarity=0.239 Sum_probs=91.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCC----CCccccccccccCccEEEEEEEC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
+++++|..|+|||||++.+.+...... .|-.+ ++.+ =-.+||||. .++..........+|.+++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk-KTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK-KTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc-cccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 799999999999999999998764321 12111 1111 125799993 34444445556789999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
+++++- +...+..+ ...|+|-+++|.|++++...+...+.+-.-.++ ++|++|+.++.|++++++.|.
T Consensus 75 nd~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHHH
Confidence 877542 11222222 234599999999999765554444333222222 688999999999999999886
Q ss_pred H
Q 030187 175 N 175 (181)
Q Consensus 175 ~ 175 (181)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 4
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=3.1e-13 Score=107.10 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=70.1
Q ss_pred EEEEEEEcCCCCCc-----cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030187 61 ISFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 61 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~ 135 (181)
..+.++||||-... .......+..+|++++|+|+...-+... ..+.+.+.... .+.|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 34789999996432 2234457889999999999976433322 22333333321 1359999999999865322
Q ss_pred --HhHHHhhhC--CCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 136 --AAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 --~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.+.+..... +.........+|++||+.|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 233322211 0000111235889999999999999999876
No 276
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.53 E-value=2.1e-14 Score=103.18 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCCccccccccc--------cCccEEEEEEECCC---cccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSND---RDRVVEAR-DELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
.+.++|||||.++...+.... ...-++++++|+.. +..|-+.. ....-..+ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 699999999987765544333 34557888999763 33342222 22222333 4799999999999
Q ss_pred CCCCC---------C-----------HhHHHhhhCCCcccCcce-EEEEecccCCCCHHHHHHHHHHHh
Q 030187 130 LPNAM---------N-----------AAEITDKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 130 ~~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+.+.. + ...+.+.+.......... .++.+|+++++|+++++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98721 0 111111111111111223 688999999999999999887654
No 277
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.53 E-value=4.6e-14 Score=105.50 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=98.4
Q ss_pred HHHHhhh--ccCcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCc-------------------ccee-EEE-
Q 030187 7 KLFSRLF--AKKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPT-------------------IGFN-VET- 55 (181)
Q Consensus 7 ~~~~~~~--~~~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~t-------------------~~~~-~~~- 55 (181)
.++++.. ....+.|.|.|+||+|||||++.+... .. ....|+ .... +..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~ 123 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRP 123 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEe
Confidence 4444443 356789999999999999999987421 00 000010 0000 111
Q ss_pred --------------------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCC
Q 030187 56 --------------------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 56 --------------------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~ 115 (181)
.+..++.+.++||+|..+.... ....+|.++++.+....+.++.......++.
T Consensus 124 ~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a---- 196 (332)
T PRK09435 124 SPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELA---- 196 (332)
T ss_pred cCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhh----
Confidence 1123577999999997744333 3556999999987555555555443232322
Q ss_pred CCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 116 LRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
-++|+||+|+....... ++...+..... .....+++.+||+++.|++++++.|.+.+.
T Consensus 197 -----DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 197 -----DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred -----heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 28999999987654322 23333332111 112247889999999999999999988653
No 278
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.52 E-value=7.3e-14 Score=114.88 Aligned_cols=112 Identities=21% Similarity=0.099 Sum_probs=79.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC---------------Cccc----ccCccceeEE----EEEEcCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNVE----TVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~i~D~~G~~ 72 (181)
+..+|+++|+.++|||||+++|... .+.. ...|+..... .+++.+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999642 1111 2224433322 245677899999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+|.......++.+|++++|+|+.+.-..+.. ..+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cCCCEEEEEEChhccc
Confidence 9988888889999999999998753222221 22222222 4677889999999864
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.52 E-value=1.7e-13 Score=114.87 Aligned_cols=140 Identities=21% Similarity=0.202 Sum_probs=89.4
Q ss_pred CChHHHHhhhhcCCcccccC---ccceeEEEEEEc------------------CEEEEEEEcCCCCCccccccccccCcc
Q 030187 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 28 ~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~------------------~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
++||||+..+.+.......+ |..+..+.+... .-.+.+|||||++.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998766432221 222222222221 113899999999999888877888899
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhHHHhh-------
Q 030187 87 GLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAEITDK------- 142 (181)
Q Consensus 87 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~~~~~~~------- 142 (181)
++++|+|+++ ++++..+. .+.. .++|+++++||+|+..... .+...++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999975 33333222 2222 3689999999999863211 0111111
Q ss_pred ----hCCCcc----------cCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 143 ----LGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 143 ----~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+....+ -...++++++||++|+|+++++..|..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 111111 124578999999999999999987754
No 280
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.52 E-value=4.7e-13 Score=93.94 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=65.4
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHh
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAA 137 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~ 137 (181)
+....++++.|..-.....+. -+|.++.|+|+.+.++... .....+. ..=++++||+|+.+. ...+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~qi~------~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGPGIT------RSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHhHhh------hccEEEEEhhhccccccccHH
Confidence 356778899885332222222 2688999999976544321 1111111 112899999999853 2222
Q ss_pred HHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
.+.+..... ..+.+++++||++|+|++++++++.+.+.-|
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~~ 198 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALLK 198 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 222222211 1245789999999999999999999877654
No 281
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.3e-13 Score=104.79 Aligned_cols=154 Identities=21% Similarity=0.200 Sum_probs=105.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC--------------------C--c------------ccccCccceeEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG--------------------E--I------------VTTIPTIGFNVETVE 57 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~--------------------~--~------------~~~~~t~~~~~~~~~ 57 (181)
...+.+++++++|+..+|||||+.++... + + +....|..+....|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34457789999999999999999999531 0 0 012224444445577
Q ss_pred EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHH------HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR------DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~------~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.....+.++|+||+..|...+......||+.++|+|++. ..|+.-. .....+++... -..++|++||+|..
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccccc
Confidence 777899999999999999999999999999999999873 2332221 12222333322 34589999999988
Q ss_pred CCC--CHhHHHhhhC-----CCcccCcceEEEEecccCCCCHHH
Q 030187 132 NAM--NAAEITDKLG-----LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 132 ~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+.. ..+++...+. ...+....+.|++||+..|+|+-.
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 753 3334444333 223344566899999999999744
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=6.2e-13 Score=96.21 Aligned_cols=118 Identities=10% Similarity=0.111 Sum_probs=75.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCCccc---c-------cc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WR 79 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~~ 79 (181)
....++|+++|.+|+|||||+|.+.+...... ..|...........+..+.+|||||-..... . ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 34679999999999999999999998764321 2244444444555678999999999664421 0 11
Q ss_pred cccc--CccEEEEEEECCCc-ccHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 80 HYFQ--NTQGLIFVVDSNDR-DRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 80 ~~~~--~~d~~ilv~d~~~~-~s~~--~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.++. ..|++++|..++.. .... .+...+.+.+....+ .++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~--~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIW--RNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhH--hCEEEEEeCCccCCC
Confidence 2222 46788888765532 1222 333444444432221 469999999998654
No 283
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=105.84 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=106.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCEEEEEEEcCCCC----Ccccccc-----cc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQD----KIRPLWR-----HY 81 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~-----~~ 81 (181)
....-+++++|-|++|||||+|.+...... ...+|.++-...+++.-..++++||||-- +-++... ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 445679999999999999999988766532 11224444444455566789999999932 1122211 11
Q ss_pred ccCccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 82 FQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+--.+|+|+.|++..| |.......+..+-- -..+.|.|+|+||+|...++...+-.+++-.......+++++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22345799999998655 55666665655422 225789999999999987765443333222111222346899999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
+.+.+||.++-....+.+.
T Consensus 323 ~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ccchhceeeHHHHHHHHHH
Confidence 9999999887776666543
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.47 E-value=7.4e-13 Score=100.66 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=110.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC--ccc-----------------ccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE--IVT-----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
--+|+++-+...|||||+..|.... +.. ...|+-..-..+.+.+..++++|||||.+|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3589999999999999999996532 211 111222223457788899999999999999998
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CC--cccCcc
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LH--SLRQRH 152 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~--~~~~~~ 152 (181)
....+.=.|++++++|+.+. ......-.+...+. .+.+-|+|+||+|.++.-..+-+.+.+. .. .-.+.+
T Consensus 85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 88888889999999999743 33333444455555 3666788999999988643332222221 11 124567
Q ss_pred eEEEEecccCC----------CCHHHHHHHHHHHhhc
Q 030187 153 WYIQSTCATSG----------EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 153 ~~~~~~Sa~~~----------~~v~~~~~~l~~~l~~ 179 (181)
+|++-.|+..| .++.-+|+.|++.+..
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 88888998874 4578888888887754
No 285
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.47 E-value=4.6e-13 Score=95.62 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=104.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc--------cc---------cCcccee-----------------EE---
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--------TT---------IPTIGFN-----------------VE--- 54 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--------~~---------~~t~~~~-----------------~~--- 54 (181)
...++++.|+|+|..|||||||++||...-.. .. ...++++ -.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 45567899999999999999999999532100 00 0011110 00
Q ss_pred -------EE---------EEcCEEEEEEEcCCCCCccc-------cccccc-cCccEEEEEEEC---CCcccHHHHHHHH
Q 030187 55 -------TV---------EYKNISFTVWDVGGQDKIRP-------LWRHYF-QNTQGLIFVVDS---NDRDRVVEARDEL 107 (181)
Q Consensus 55 -------~~---------~~~~~~~~i~D~~G~~~~~~-------~~~~~~-~~~d~~ilv~d~---~~~~s~~~~~~~~ 107 (181)
.+ ........++|||||-+... +...+. ...-+++|++|. +++-+|.+...+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 00 01235688999999753211 111111 225578889985 3566787777777
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh-------CC---Ccc------------c-CcceEEEEecccCCC
Q 030187 108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL-------GL---HSL------------R-QRHWYIQSTCATSGE 164 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-------~~---~~~------------~-~~~~~~~~~Sa~~~~ 164 (181)
..+++. .+.|++++.||+|+.+.....++...+ .. ... + .++...+.+||.+|.
T Consensus 174 cSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 174 CSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 777776 578999999999999865443332222 10 000 0 145678899999999
Q ss_pred CHHHHHHHHHHHhh
Q 030187 165 GLYEGLDWLSNNIA 178 (181)
Q Consensus 165 ~v~~~~~~l~~~l~ 178 (181)
|.+++|..+.+.+.
T Consensus 251 G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 251 GFDDFFTAVDESVD 264 (366)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887765
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.46 E-value=4.8e-13 Score=95.78 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=82.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.....|+++|++|+|||||++.+.+..... .....+. .......+..+.++|+||+. .. .....+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence 455789999999999999999997652111 1111111 12233356788999999864 22 2234578999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHHhh----hCCCcccCcceEEEEecccCCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEITDK----LGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++...... ...+...+.. .+.| +++++||+|+.+... .+++... +..... .+.+++.+||+++-
T Consensus 113 a~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCC
Confidence 87543322 2223333332 3456 456999999874321 2222222 221111 23478899998863
No 287
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.46 E-value=7.7e-13 Score=96.56 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=115.0
Q ss_pred HHHHHhhhcc------CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE----cCEEEEEEEcCCCCCcc
Q 030187 6 TKLFSRLFAK------KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIR 75 (181)
Q Consensus 6 ~~~~~~~~~~------~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~ 75 (181)
+.+++....+ ..-+|+|+|+.|+||||||.+|.+.+........+..+-.+.. +..++.+|-..|+....
T Consensus 35 s~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~ 114 (473)
T KOG3905|consen 35 SEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHK 114 (473)
T ss_pred HHHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhh
Confidence 4455554444 3368999999999999999999998855555555555544433 23678899999988777
Q ss_pred ccccccccC---c-cEEEEEEECCCcccHHHHHHHHHHHhcCC-------------------------------------
Q 030187 76 PLWRHYFQN---T-QGLIFVVDSNDRDRVVEARDELHRMLNED------------------------------------- 114 (181)
Q Consensus 76 ~~~~~~~~~---~-d~~ilv~d~~~~~s~~~~~~~~~~~~~~~------------------------------------- 114 (181)
.+.+..+.- + -.+|++.|.++++.+-...+.|..++.+.
T Consensus 115 ~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~ 194 (473)
T KOG3905|consen 115 GLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQ 194 (473)
T ss_pred hHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 776655443 2 36788999999976655555444443310
Q ss_pred ------------------------CCCCCeEEEEEeCCCCCCCC---------C---HhHHHhhhCCCcccCcceEEEEe
Q 030187 115 ------------------------ELRDAVLLVFANKQDLPNAM---------N---AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 115 ------------------------~~~~~piivv~nK~D~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..-++|++||+||+|..... . ++...+.+.+ .++...+.+
T Consensus 195 ~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL----r~GaaLiyT 270 (473)
T KOG3905|consen 195 RRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL----RYGAALIYT 270 (473)
T ss_pred cccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH----HcCceeEEe
Confidence 00267899999999984321 1 1111122222 356678889
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
|+|...|++-+..+|++.+.
T Consensus 271 SvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 271 SVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ecccccchHHHHHHHHHHhc
Confidence 99999999999999998764
No 288
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=1.3e-13 Score=97.85 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=90.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEEcCEEEEEEEcCCCCCccc--------c---cccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------L---WRHY 81 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~ 81 (181)
++|+++|.+|+||||++|.+.+...... ..|...........+..+.++||||-.+... + ....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999998774322 2255555556677889999999999432111 1 1123
Q ss_pred ccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CC-cccCcceEEE
Q 030187 82 FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LH-SLRQRHWYIQ 156 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 156 (181)
....|++++|+.+... +.-.....++..++....+ ..++++.|..|.......++..+... +. ..+.++-.|+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 4568999999998722 1123333455555554332 35888899998776655433322110 01 1111222233
Q ss_pred Eeccc------CCCCHHHHHHHHHHHhh
Q 030187 157 STCAT------SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~Sa~------~~~~v~~~~~~l~~~l~ 178 (181)
..+.+ +...+.++++.+-+++.
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 33333 34567888877766654
No 289
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.45 E-value=6.6e-13 Score=102.40 Aligned_cols=131 Identities=25% Similarity=0.421 Sum_probs=96.8
Q ss_pred CccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCC
Q 030187 47 PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 47 ~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (181)
+|.|+....+.. .+..+.++|++|+...+..|..++.+++++|+|+++++ ...+.+....+..+.....
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 367777778888 88999999999999999999999999999999999752 1357777888999999888
Q ss_pred CCCCeEEEEEeCCCCCCC--------------------CCHhHHHh----hhCCCcccC---cceEEEEecccCCCCHHH
Q 030187 116 LRDAVLLVFANKQDLPNA--------------------MNAAEITD----KLGLHSLRQ---RHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~--------------------~~~~~~~~----~~~~~~~~~---~~~~~~~~Sa~~~~~v~~ 168 (181)
..+.|+++++||.|+... ...+.+.. .+....... +.+.++.|+|.+-.++..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 889999999999997421 11122211 111111111 556777899999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+|+.+.+.|
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 999887754
No 290
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.44 E-value=3.9e-12 Score=93.69 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=72.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc--ccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc-------ccccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-------WRHYF 82 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~ 82 (181)
..+.++|+++|.+|+||||++|++.+..... ..+ +...........+..+.+|||||..+.... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999876321 111 122222333457789999999996643221 11111
Q ss_pred --cCccEEEEEEECCC--cccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 83 --QNTQGLIFVVDSND--RDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 --~~~d~~ilv~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
...|++++|..++. .... ..+...+.+.+.... -.+++++.|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 25899999965542 2212 223333444443222 246899999999763
No 291
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.43 E-value=9e-13 Score=94.03 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=94.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccC---------------------ccceeEEEE---------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIP---------------------TIGFNVETV--------- 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~---------------------t~~~~~~~~--------- 56 (181)
.+.+.|.+.|+||+|||||++.|... +. ....| ..+......
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 36789999999999999999999531 00 00000 011111111
Q ss_pred -----------EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030187 57 -----------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 57 -----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+-.++.+.+++|.|--+...... .-+|.+++|..+.-.+..+.+...+.++.. ++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~---~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA---DMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH---TTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH---HhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEE
Confidence 11357799999998655443333 449999999999888888999888888866 8999
Q ss_pred eCCCCCCCCC-HhHHHhhhCCC--cccCcceEEEEecccCCCCHHHHHHHHHHH
Q 030187 126 NKQDLPNAMN-AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 126 nK~D~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
||.|...... ..++...+.+. .......+++.|||.++.|++++++.|.+.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 9999554321 22333333321 122334689999999999999999998874
No 292
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.5e-12 Score=97.32 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=111.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
.|+..|+-..|||||+..+.+.... ....|+++.++..+.++..+.++|+||++++-...-..+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4778899999999999999876532 3455888888888877789999999999999988888888999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++. +......-..++... .....++|+||+|..+....++..+....... ..+.++|.+|+++|.|++++-+.
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 99532 222222111222221 12346999999999986544444333321111 34456799999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 98876
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=1.3e-12 Score=109.16 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=79.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc------------cc-------ccCccceeEEEEEE----------------c
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VT-------TIPTIGFNVETVEY----------------K 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~------------~~-------~~~t~~~~~~~~~~----------------~ 59 (181)
.+-.+|+|+|+.++|||||+++|....- .+ ...|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3556999999999999999999964320 00 11122222222322 2
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+..++++|||||.+|.......++.+|++|+|+|+.+.-..+.. ..|..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH----CCCCEEEEEECCccc
Confidence 57889999999999998888888999999999998755332322 23444444 578999999999987
No 294
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.40 E-value=2.1e-12 Score=93.44 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=73.5
Q ss_pred CCccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR 149 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (181)
+++..+...+++++|.+++|+|+.+++ ++..+..|+..... .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 778888888999999999999999887 88888887765432 578999999999996532221 222222 1
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHH
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
..+++++++||++|.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567899999999999999998764
No 295
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=1.5e-12 Score=108.59 Aligned_cols=112 Identities=20% Similarity=0.167 Sum_probs=78.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--c----------cc-------ccCccceeEEEEEEc----------CEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------VT-------TIPTIGFNVETVEYK----------NISFTV 65 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~----------~~-------~~~t~~~~~~~~~~~----------~~~~~i 65 (181)
++..+|+++|+.++|||||+++|.... . .+ ...|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 344699999999999999999997521 1 00 011222222223332 567999
Q ss_pred EEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 66 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+||||+.+|.......++.+|++++|+|+.+.-..+. ...|..... .++|+++++||+|..
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998888888899999999999875422222 233444433 468999999999987
No 296
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.4e-12 Score=89.14 Aligned_cols=159 Identities=23% Similarity=0.287 Sum_probs=108.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC----cccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc---ccccccCccEEEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d~~il 90 (181)
.+|+++|...+||||+..-...+- ..-..+|..+....+...-++|++||.|||..+... ..+.++.+.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 569999999999999976554432 222334444444444445588999999999866544 3567889999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCH--------hHHHhhhCCCcccCcceEEEEecc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNA--------AEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|+|+. +.+.+....+...... +-.+++.+-+.++|.|....+.. +...+.+.-.......+.|+.||-
T Consensus 108 vIDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99984 3355555444444433 23378899999999998764321 222233333444556778998998
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
.+ ..+-|+|..++++|..
T Consensus 186 yD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred cc-hHHHHHHHHHHHHHhh
Confidence 87 5699999988887754
No 297
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.4e-12 Score=102.58 Aligned_cols=154 Identities=22% Similarity=0.195 Sum_probs=103.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-----cccCccceeEEEEE----------------EcCEEEEEEEcCCCCCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVE----------------YKNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-----~~~~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 74 (181)
++.-++|+|+..+|||-|+..+.+...- +....++.+++... ..---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 5678999999999999999999764321 11223333332211 11124789999999999
Q ss_pred cccccccccCccEEEEEEECC---CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------CCH---------
Q 030187 75 RPLWRHYFQNTQGLIFVVDSN---DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MNA--------- 136 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------~~~--------- 136 (181)
.+++......||.+|+|+|+. ++.+++++ .+++. ++.|+|+.+||+|.... ...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 999999999999999999985 34444433 22333 68999999999997541 000
Q ss_pred ----------hHHHhhhCCCc------cc----CcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 137 ----------AEITDKLGLHS------LR----QRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 137 ----------~~~~~~~~~~~------~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
..+.-++.-.. ++ ..-+.+++|||.+|+||-+++-.|++.-
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 01111111111 11 1236789999999999999999888753
No 298
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.38 E-value=1.1e-11 Score=96.71 Aligned_cols=161 Identities=15% Similarity=0.189 Sum_probs=105.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEE--c----CEEEEEEEcCCCCCccccccccccCc----
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--K----NISFTVWDVGGQDKIRPLWRHYFQNT---- 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~--~----~~~~~i~D~~G~~~~~~~~~~~~~~~---- 85 (181)
..-.|+|+|..++|||||+.+|.+.+- ..++.+..|...+. + ..++.+|...|...+..+.+..+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 346999999999999999999987653 33455555544433 1 25789999999888887776655532
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcC--------------------------------C-------------------
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNE--------------------------------D------------------- 114 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~--------------------------------~------------------- 114 (181)
-.+++|.|.+.|+.+.+....|..+++. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 3688899999998765433322222110 0
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCC--------CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 115 -----------ELRDAVLLVFANKQDLPNAM--------NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 115 -----------~~~~~piivv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
..-++|++||++|+|..... ...++....-+...-.++...+.||++...+++.+..+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 00147999999999974311 11111111111112246667888999999999999999988
Q ss_pred Hhh
Q 030187 176 NIA 178 (181)
Q Consensus 176 ~l~ 178 (181)
.+.
T Consensus 262 ~l~ 264 (472)
T PF05783_consen 262 RLY 264 (472)
T ss_pred Hhc
Confidence 775
No 299
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.38 E-value=4.4e-12 Score=93.33 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=69.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCccceeEEEEE--Ec--CEEEEEEEcCCCCCc-------
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVE--YK--NISFTVWDVGGQDKI------- 74 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~--~~--~~~~~i~D~~G~~~~------- 74 (181)
.++|+|+|.+|+|||||+|.|++...... ..+..+...... .. .+++.++||||-...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999988653321 123333333332 22 368899999992211
Q ss_pred -----------cc--------c-ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 75 -----------RP--------L-WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 -----------~~--------~-~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.. . ....-.+.|+++|+++++. .++..+.-..+.-+. ...++|.|+.|.|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 00 0 1112235799999999873 345555555555555 468899999999987654
Q ss_pred CH
Q 030187 135 NA 136 (181)
Q Consensus 135 ~~ 136 (181)
+.
T Consensus 159 el 160 (281)
T PF00735_consen 159 EL 160 (281)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 300
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=7.8e-13 Score=85.83 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc--CccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
+||+++|..|+|||+|+.++....+.... +|.+ +......+.+.++.+++||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 58999999999999999999776664211 2322 3333455678899999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+.+++... |...+... ....+|.++++||.|+.+.. .+.+.... .++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHHH--------HHHHHhCCCcchhh
Confidence 88888665 44433332 23568899999999974321 11111111 35688999999985
No 301
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.35 E-value=1.3e-11 Score=89.48 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=78.2
Q ss_pred cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-Hh
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AA 137 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~ 137 (181)
.++.+.+++|.|--+...... .-+|.+++|.-+.-.+..+.....+.++.. ++|+||.|....+. ..
T Consensus 142 aG~DvIIVETVGvGQsev~I~---~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIA---NMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHh---hhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHHH
Confidence 356799999998665554332 349999999988778889999998888866 89999999655421 22
Q ss_pred HHHhhhCCC----cccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 138 EITDKLGLH----SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 138 ~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++...+.+. .......+++.|||..|+|++++++.+.+..
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 333333322 2234556899999999999999999998764
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.35 E-value=9.7e-12 Score=88.03 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=87.9
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCC---cc----ccc-----C-----ccceeEEE-----------------
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGE---IV----TTI-----P-----TIGFNVET----------------- 55 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~---~~----~~~-----~-----t~~~~~~~----------------- 55 (181)
....+.....|.++|+.|+|||||++++.... .. ... . ..+.....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence 34555667899999999999999999996431 00 000 0 00001100
Q ss_pred ---EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 56 ---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 56 ---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....+..+.++++.|.-.... .+.-..+..+.|+|+.+.+....... .. ...|.++++||+|+.+
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~~~---~~------~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLKYP---GM------FKEADLIVINKADLAE 162 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhhhH---hH------HhhCCEEEEEHHHccc
Confidence 001135678888888321111 11123556667888865432111111 11 2456799999999975
Q ss_pred CCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 133 AMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
... ..++...+... ....+++++||++|.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 322 22333322211 1235799999999999999999998753
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.34 E-value=2.7e-11 Score=90.35 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=64.8
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~ 139 (181)
++.+.++||+|..... ......+|.++++...... ..+......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5778999999954222 2245668888888654323 3333322222 24667999999998765432221
Q ss_pred Hhhh----C-C-CcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 140 TDKL----G-L-HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 140 ~~~~----~-~-~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
...+ . . ........+++.+||+++.|++++++++.+.+
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111 1 0 10111223588999999999999999998764
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.33 E-value=1.1e-11 Score=93.71 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=81.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc--ccCc----cceeEEEEEEcC-EEEEEEEcCCCCCccccc-----cc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPT----IGFNVETVEYKN-ISFTVWDVGGQDKIRPLW-----RH 80 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t----~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~-----~~ 80 (181)
.....++|+|+|++|+|||||||.|.+-...+ ..+| .......+...+ -++.+||.||........ ..
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 34567999999999999999999997633211 1110 111222333333 469999999953222111 23
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhh---hC---C
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDK---LG---L 145 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~---------~~~~~~~~~~~---~~---~ 145 (181)
.+...|.+|++.+- .|.....++...++. .++|+.+|-||+|.. ..-..+++.+. .. +
T Consensus 111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 35678988887753 577777777766665 588999999999951 01111111111 00 1
Q ss_pred CcccCcceEEEEecccC--CCCHHHHHHHHHHHhh
Q 030187 146 HSLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~--~~~v~~~~~~l~~~l~ 178 (181)
........++|-+|+.+ ..+...+.+.|.+-|.
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 11112334677888876 4557777777766554
No 305
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.32 E-value=6.7e-12 Score=103.64 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=76.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--c----------cc-------ccCccceeEEEEEE----cCEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--I----------VT-------TIPTIGFNVETVEY----KNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~----------~~-------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~ 72 (181)
+.-+|+++|+.++|||||+.+|.... . .+ ...|+......+.+ .+..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 44689999999999999999996421 0 00 01123322222222 46889999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+|.......++.+|++++|+|+...-..+ ....|..... .+.|.++++||+|...
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 99888888889999999999987542222 2223333223 2467799999999763
No 306
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=6e-12 Score=91.78 Aligned_cols=160 Identities=18% Similarity=0.097 Sum_probs=104.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeEE--------------------EEEEc------CEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVE--------------------TVEYK------NIS 62 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~--------------------~~~~~------~~~ 62 (181)
+..++|.++|+...|||||...|.+--.. ....|+..-|. ..... -..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56799999999999999999999763211 01111111110 00100 145
Q ss_pred EEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----
Q 030187 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---- 138 (181)
Q Consensus 63 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~---- 138 (181)
+.+.|.|||+-.-+.+.+...--|++++|+.+++++.-....+-+..+--- .-..++++=||+|+.+.+...+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 789999999866555555555579999999999777654544444332111 1345889999999998643332
Q ss_pred HHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+.+..+- .-..+.+++++||..+.|++-+++.|.+.+..
T Consensus 165 Ik~FvkG--t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 165 IKEFVKG--TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHhcc--cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3222221 22346689999999999999999999988753
No 307
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=1e-11 Score=86.64 Aligned_cols=155 Identities=21% Similarity=0.283 Sum_probs=94.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC----cccccCccceeEEEEEE-cCEEEEEEEcCCCCCcc-----ccccccccCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----PLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~-----~~~~~~~~~~d 86 (181)
.-||+++|.+|+||||+=.-+..+. .....+|+++.-..+.. +++-+++||.+|++.+- ......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4689999999999998754444332 33556677776655555 45889999999998432 23456788999
Q ss_pred EEEEEEECCCcccHHHHH---HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCcceEEEEecc
Q 030187 87 GLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQSTCA 160 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa 160 (181)
++++|||+...+-...+. ..+..+++. .+...+....+|+|+......+.+.+... ...-.+..+.++++|-
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999997543222222 222333332 25667888899999987544333222111 1111234466777777
Q ss_pred cCCCCHHHHHHHHH
Q 030187 161 TSGEGLYEGLDWLS 174 (181)
Q Consensus 161 ~~~~~v~~~~~~l~ 174 (181)
.+. .+-.++..++
T Consensus 162 wDe-tl~KAWS~iv 174 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIV 174 (295)
T ss_pred hhH-HHHHHHHHHH
Confidence 663 2333344433
No 308
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.1e-11 Score=92.22 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=93.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhc--CC--------------cc---------cccCccceeEEEEEEcCEEEEEEEcCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL--GE--------------IV---------TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~--~~--------------~~---------~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 71 (181)
+-+.+||-+|.+|||||..+|.- +. .. +...++......+++.+..+++.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 34678999999999999999842 11 00 1222444556778889999999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~ 148 (181)
++|..-...-+.-+|.+++|+|+.. .++.....+.++.+. +++||+-++||.|....... .++.+.+++..+
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAK--GiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAK--GIEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred cccchhHHHHHHhhheeeEEEeccc--CccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence 9999887777777999999999953 344444555555554 78999999999998776544 466666666544
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=7.1e-11 Score=95.98 Aligned_cols=116 Identities=19% Similarity=0.142 Sum_probs=86.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--------------cc-------cccCccceeEEEEEEcC-EEEEEEEcCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKN-ISFTVWDVGGQ 71 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~-~~~~i~D~~G~ 71 (181)
..+.-+|.++|+..+||||+..++.... +. ...-|+.....++.+.+ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3456799999999999999999995321 11 11224444556677784 99999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.+|.......++-+|+++.|+|+.+.=.. .....|.+..+ .++|.++++||+|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccC
Confidence 99999999999999999999999643221 22234444444 489999999999987653
No 310
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.25 E-value=9.4e-11 Score=80.17 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=42.2
Q ss_pred EEEEEEcCCCC----CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 62 SFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 62 ~~~i~D~~G~~----~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.+.++|+||.. .....+..+++.+|++++|.+++...+-..... +.+.... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence 48999999953 233557788899999999999987555443333 3333333 233489999984
No 311
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.19 E-value=9.9e-10 Score=85.89 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=104.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
..++.++..|+|+.++|||.+++.+.++.+... .+...++...+....-.+.+-|.+-. ....+...- ..||.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 344668999999999999999999999776531 12222333333444455667777754 222222222 66999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
++++||++++.+|.-....+...... ...|+++|++|.|+... ....+.++++++. +-+..|++.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~ 568 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKT 568 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCC
Confidence 99999999999999888877666554 68999999999998653 2336777777765 223457664
Q ss_pred CCCHHHHHHHHHHHh
Q 030187 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l 177 (181)
... .++|..|..+-
T Consensus 569 ~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 569 LSS-NELFIKLATMA 582 (625)
T ss_pred CCC-chHHHHHHHhh
Confidence 333 88888887654
No 312
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.18 E-value=2.7e-10 Score=83.46 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=80.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc--------ccccCc---------cceeEEE-------------------
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPT---------IGFNVET------------------- 55 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~--------~~~~~t---------~~~~~~~------------------- 55 (181)
+.....+-|.++|+||+|||||++++.+.-. .....| .+.....
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 4455678999999999999999988864310 000000 0001111
Q ss_pred -EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 56 -VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 56 -~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+...+..+.++++.|.-..-... .. . .+.-+.++++...+.. .. .+-.+ -..+-++++||+|+....
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~f-dl-g-e~~~v~vlsV~eg~dk--pl-Kyp~~------f~~ADIVVLNKiDLl~~~ 246 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASF-DL-G-EKHKVAVLSVTEGEDK--PL-KYPHM------FAAASLMLLNKVDLLPYL 246 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCcc-ch-h-hceeEEEEECcccccc--ch-hccch------hhcCcEEEEEhHHcCccc
Confidence 11123456677777641111100 00 1 2223456666533110 00 11111 134569999999997532
Q ss_pred --CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 135 --NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
..+.+.+.+... ....+++++||++|+|+++++++|.++.
T Consensus 247 ~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 247 NFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred HHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 233333322111 1345799999999999999999998743
No 313
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.3e-10 Score=85.86 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=94.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC----cc------cccCccceeEEEEEE---------cCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE----IV------TTIPTIGFNVETVEY---------KNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~----~~------~~~~t~~~~~~~~~~---------~~~~~~i~D~~G~~~~~~ 76 (181)
..+++.++|+..||||||..++..-. +. +...|.+..+..+.. ....+.++|+|||.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 45899999999999999999996432 11 222233333333222 347789999999997766
Q ss_pred cccccccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhC--CCccc
Q 030187 77 LWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLG--LHSLR 149 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~--~~~~~ 149 (181)
.......-.|..++|+|+... ++-..-...+-+++. ...++|+||.|...+. ..++...... +....
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 666666778999999998633 221111122233322 2367888888865432 2222222111 11111
Q ss_pred C-cceEEEEecccCC----CCHHHHHHHHHHHhh
Q 030187 150 Q-RHWYIQSTCATSG----EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~-~~~~~~~~Sa~~~----~~v~~~~~~l~~~l~ 178 (181)
- .+.|++++||++| +++.|+.+.|-..+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 1 2368999999999 556666555555443
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.16 E-value=4.8e-10 Score=76.69 Aligned_cols=146 Identities=20% Similarity=0.171 Sum_probs=81.6
Q ss_pred cCc-ceEEEEcCCCCChHHHHhhhhcC---Ccc---------c-cc-----CccceeEEEEEE-----------------
Q 030187 15 KKE-MRILMVGLDAAGKTTILYKLKLG---EIV---------T-TI-----PTIGFNVETVEY----------------- 58 (181)
Q Consensus 15 ~~~-~~i~v~G~~~~GKssli~~l~~~---~~~---------~-~~-----~t~~~~~~~~~~----------------- 58 (181)
++. +.|.|.|++|||||+|+.+++.. ++. + .. .+.+.....++.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 344 79999999999999999988542 110 0 00 001211111111
Q ss_pred -----cCEEEEEEEcCCCCCccccccccccCcc-EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 59 -----KNISFTVWDVGGQDKIRPLWRHYFQNTQ-GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....+.+++..|.- ..... +.-.| .-|+|+|++..+-...= ....... .=++|+||.|+..
T Consensus 90 l~~~~~~~Dll~iEs~GNL--~~~~s--p~L~d~~~v~VidvteGe~~P~K--------~gP~i~~-aDllVInK~DLa~ 156 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNL--VCPFS--PDLGDHLRVVVIDVTEGEDIPRK--------GGPGIFK-ADLLVINKTDLAP 156 (202)
T ss_pred HhhcCCcCCEEEEecCcce--ecccC--cchhhceEEEEEECCCCCCCccc--------CCCceeE-eeEEEEehHHhHH
Confidence 12456777777721 11111 11133 78889998754321100 0111111 3489999999987
Q ss_pred CCCH--hHHHh-hhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 133 AMNA--AEITD-KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 133 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
.... +-+.+ .... ..+.+++.+|+++|+|++++++++....
T Consensus 157 ~v~~dlevm~~da~~~----np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 157 YVGADLEVMARDAKEV----NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HhCccHHHHHHHHHHh----CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 5433 22211 1111 1344799999999999999999987654
No 315
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.16 E-value=4.3e-10 Score=83.71 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=77.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEEEEE--c--CEEEEEEEcCCCCCc-----
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEY--K--NISFTVWDVGGQDKI----- 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~----- 74 (181)
.-.++|+++|+.|+|||||+|+|++..... ..+++.+....... + .++++++||||--++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 456899999999999999999998764221 23455555544333 2 378899999992111
Q ss_pred -------------cc--------cc--cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 75 -------------RP--------LW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 75 -------------~~--------~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.. .+ ...=.++|+++|.+.++ +..+..+.-..+.-+. ...-+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 00 01 11123578999999877 5566666655555555 356689999999987
Q ss_pred CCCC
Q 030187 132 NAMN 135 (181)
Q Consensus 132 ~~~~ 135 (181)
...+
T Consensus 176 T~~E 179 (373)
T COG5019 176 TDDE 179 (373)
T ss_pred CHHH
Confidence 6543
No 316
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.1e-10 Score=81.48 Aligned_cols=160 Identities=20% Similarity=0.124 Sum_probs=100.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC-------C---cc--c-------ccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG-------E---IV--T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~-------~---~~--~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
.+.+++|..+|+...|||||...+... . +. . ...|+...-..++..+..+--.|+|||.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 357799999999999999998777421 1 11 1 122444444556667788999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCccc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-----EITDKLGLHSLR 149 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-----~~~~~~~~~~~~ 149 (181)
-..+....-+.|+.|+|+.+++.---+.....+ +.++. --+.+++++||+|+.+..+.. ++.+.+..-.+.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 988877778899999999987632111111111 11111 123578888999999853322 233333444444
Q ss_pred CcceEEEEecccC-CC-------CHHHHHHHHHHHh
Q 030187 150 QRHWYIQSTCATS-GE-------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~Sa~~-~~-------~v~~~~~~l~~~l 177 (181)
..+.|++.-||.. .+ .+.|+++.+-+.+
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 5567888777764 22 2455555555444
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.13 E-value=1e-09 Score=83.43 Aligned_cols=159 Identities=17% Similarity=0.169 Sum_probs=89.6
Q ss_pred HHHhhhcc--CcceEEEEcCCCCChHHHHhhhhcC----Ccc-------------c--cc---CccceeE---EEEE---
Q 030187 8 LFSRLFAK--KEMRILMVGLDAAGKTTILYKLKLG----EIV-------------T--TI---PTIGFNV---ETVE--- 57 (181)
Q Consensus 8 ~~~~~~~~--~~~~i~v~G~~~~GKssli~~l~~~----~~~-------------~--~~---~t~~~~~---~~~~--- 57 (181)
++.....+ -.+-|+|+|+.++|||||+|+|.+. ... . .. .|.+..+ ..++
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 34444444 3488999999999999999999875 211 1 11 1222222 1122
Q ss_pred --EcCEEEEEEEcCCCC--------Cccc-----------c----------cccccc-CccEEEEEE-ECC----CcccH
Q 030187 58 --YKNISFTVWDVGGQD--------KIRP-----------L----------WRHYFQ-NTQGLIFVV-DSN----DRDRV 100 (181)
Q Consensus 58 --~~~~~~~i~D~~G~~--------~~~~-----------~----------~~~~~~-~~d~~ilv~-d~~----~~~s~ 100 (181)
.-+.+++++||+|.. +-.. . ....++ +++..++|. |.+ .++.+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 234789999999931 1111 0 223344 789999888 764 23445
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc--CCCCHHHHHHHHH
Q 030187 101 VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT--SGEGLYEGLDWLS 174 (181)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~~~~~l~ 174 (181)
......+.+.++. .++|+++++||.|-...+ ..++...+. +.++++++.+|+. +...+..+++.+.
T Consensus 166 ~~aEe~~i~eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 166 VEAEERVIEELKE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred hHHHHHHHHHHHh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 5555544444444 589999999999943322 222222221 1123345555544 4555666666544
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.11 E-value=8.8e-10 Score=88.18 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=71.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCCcc-------cc---ccccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHYF 82 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~~ 82 (181)
.++|+++|.+|+||||++|.|.+...... ..|...........+..+.++||||-.... .+ ...++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 46899999999999999999998763211 223333333334467889999999965431 11 11222
Q ss_pred c--CccEEEEEEECCCcccH---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 83 Q--NTQGLIFVVDSNDRDRV---VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 ~--~~d~~ilv~d~~~~~s~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
. .+|++++|..++..... ......+.+++....+ ..+||+.|+.|...
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence 2 47999999877532221 1233444444443222 34899999999875
No 319
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1e-09 Score=82.18 Aligned_cols=114 Identities=19% Similarity=0.278 Sum_probs=76.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc----------cCccceeEEEEEE--c--CEEEEEEEcCCCCC-------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--K--NISFTVWDVGGQDK-------I 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~-------~ 74 (181)
-.|+++++|++|.|||||+|+|+...+... ..|..+....+.. + .++++++||||-.+ +
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 458999999999999999999987754322 1144454444443 2 36788999999211 1
Q ss_pred c------------------cccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 75 R------------------PLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 ~------------------~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+ .+....+. ++|+++|.+.++ ...+..+.-..+.-+. ....+|-|+.|.|...+.
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 1 01111222 689999999876 4455666665555555 467789999999987653
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.06 E-value=6.5e-09 Score=74.75 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCCc-------------cccccccccC-ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 61 ISFTVWDVGGQDKI-------------RPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 61 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
..+.++|+||.... ..+...|+++ .+.+++|+|+...-.-+.. ..+.+.+.. .+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH---cCCcEEEEEE
Confidence 56999999997421 1234566774 4588888887532111111 122222221 4688999999
Q ss_pred CCCCCCC
Q 030187 127 KQDLPNA 133 (181)
Q Consensus 127 K~D~~~~ 133 (181)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998764
No 321
>PTZ00258 GTP-binding protein; Provisional
Probab=99.03 E-value=1.9e-09 Score=82.45 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=55.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEc-----------------CEEEEEEEcCCCCCc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~ 74 (181)
.+..+|+++|.||+|||||+|.|.+.... . ...|+..+...+... ...+.++|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46689999999999999999999765532 1 112334444334332 235899999995422
Q ss_pred c-------ccccccccCccEEEEEEECC
Q 030187 75 R-------PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 75 ~-------~~~~~~~~~~d~~ilv~d~~ 95 (181)
. ......++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 12334568899999999974
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=9.7e-10 Score=87.19 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=77.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc----------------C----ccceeEEE-----EEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI----------------P----TIGFNVET-----VEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~----t~~~~~~~-----~~~~~~~~~i~D~~G 70 (181)
+..+++++|+-++|||+|+..|.....++-. . ++..+-.+ .+.+.+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4468999999999999999999754322110 0 11111111 122457799999999
Q ss_pred CCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
|..|.......++-+|++++|+|+.+.=.++.-+. +....+ .+.|+++|+||.|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHHh----ccCcEEEEEehhHHH
Confidence 99999999999999999999999965434333222 222222 578999999999963
No 323
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.01 E-value=4.3e-10 Score=87.34 Aligned_cols=155 Identities=17% Similarity=0.277 Sum_probs=112.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE---EEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...|+.|+|..++|||+|++++..+.+.....+.+-.+ ..+...+..+.+.|.+|.... .|..-+|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEE
Confidence 45799999999999999999999998876666555443 234456677888888884432 2345599999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
...+..+|+.+......+..+..-..+|.++++++.-..... ....-...+. .....+.+|++++..|.++..+
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccceeecchhhhhhHHHH
Confidence 999999999999888777766555678889998876443211 1111111111 1223457899999999999999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
|+.+..++.
T Consensus 181 f~~~~~k~i 189 (749)
T KOG0705|consen 181 FQEVAQKIV 189 (749)
T ss_pred HHHHHHHHH
Confidence 998887654
No 324
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=7.7e-10 Score=83.14 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=104.3
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC----------------------------------CcccccCccceeEEEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG----------------------------------EIVTTIPTIGFNVETVE 57 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~----------------------------------~~~~~~~t~~~~~~~~~ 57 (181)
.+++.+++++++|+..+||||+-.++... +-.....|++.....++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34578899999999999999998888431 00122346666667788
Q ss_pred EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.....|.+.|+|||..|-..+.....+||.-++|+++...+ .|+.--+.-....-.....-...++++||+|.+..+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 88889999999999999998888889999999999874211 222211111111001111235689999999987643
Q ss_pred CHhHHHh----hh----C-CCcccCcceEEEEecccCCCCHHHHH
Q 030187 135 NAAEITD----KL----G-LHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 135 ~~~~~~~----~~----~-~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
...+... .+ . +......+..|+++|..+|.++++..
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 2222211 11 1 11122345679999999999988754
No 325
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.00 E-value=9e-10 Score=80.66 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=51.3
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcC-----------------EEEEEEEcCCCCCcc----
Q 030187 20 ILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR---- 75 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~---- 75 (181)
|+++|.|++|||||+|.|.+.... . ...|+......+...+ ..++++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999887642 1 1224444444444332 258999999954221
Q ss_pred c---cccccccCccEEEEEEECC
Q 030187 76 P---LWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 ~---~~~~~~~~~d~~ilv~d~~ 95 (181)
. .....++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2334467899999999874
No 326
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.98 E-value=8.6e-09 Score=77.32 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=96.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-------------------cccCccceeEEEEEE----------------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIPTIGFNVETVEY---------------- 58 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------~~~~t~~~~~~~~~~---------------- 58 (181)
...++.+.+.|+.++|||||.-.|..+... ...+.+.+..+.|+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 457789999999999999999999754421 112223333333322
Q ss_pred -----cCEEEEEEEcCCCCCccccc--cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 59 -----KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 -----~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+--+.+.|+.||+.|.... .-.-+..|..++++.+++.-+ .+.. +.+...---..|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tk---EHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTK---EHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhh---HhhhhhhhhcCCEEEEEEecccC
Confidence 12347899999999887543 344567999999999875422 2221 11111111478999999999998
Q ss_pred CCCCHhHHHhhh-------CC-----------------CcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 132 NAMNAAEITDKL-------GL-----------------HSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 132 ~~~~~~~~~~~~-------~~-----------------~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
..+..+.+.++. +. ..+...-.|+|.+|+-+|+|++-+.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 754333222211 10 01111246899999999999876555443
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.97 E-value=2.1e-09 Score=81.44 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=63.5
Q ss_pred cccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+....+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+.+......+...+. ..++.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeE
Confidence 3445578999999999998775 333445555443 22 5789999999999975433333333332 234468
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q 030187 156 QSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
+.+||+++.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 899999999999999988653
No 328
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.97 E-value=1.6e-09 Score=73.33 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=61.1
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
+.++.+..+++|++++|+|+.++..... ..+...+.. .++|+++|+||+|+........+.... ...+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCc
Confidence 4456677788999999999976543222 122222222 368999999999986432222211111 112346
Q ss_pred EEEecccCCCCHHHHHHHHHHHhh
Q 030187 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 155 ~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++.+||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 789999999999999999987653
No 329
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.96 E-value=2.7e-09 Score=80.79 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=53.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcC-----------------EEEEEEEcCCCCCcc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~-- 75 (181)
++|+++|.||+|||||+|.|.+.... . ...|+......+...+ ..+.++|+||-....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999886621 1 1224344433333322 358999999954321
Q ss_pred -----ccccccccCccEEEEEEECC
Q 030187 76 -----PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 -----~~~~~~~~~~d~~ilv~d~~ 95 (181)
......++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12334568899999999984
No 330
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=2.9e-09 Score=73.09 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=38.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G 70 (181)
..++++++|.||+|||||+|++.+.......+..+.+. ..+... ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence 45899999999999999999999877544444333332 222222 3689999998
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.94 E-value=1.6e-09 Score=75.65 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=61.9
Q ss_pred ccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCCcc
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL---GLHSL 148 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~---~~~~~ 148 (181)
++..+..+++++|++++|+|++++. ++.. .+... ..++|+++|+||+|+..... ........ .....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~------~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIP------RLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccch------hHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 5677788899999999999998653 1111 11111 14689999999999875432 22121111 00001
Q ss_pred cCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
......++.+||++|.|++++++.|.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 001124789999999999999999988653
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.93 E-value=4.9e-09 Score=71.01 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=38.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEc-CEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G 70 (181)
...+|+++|.||+|||||+|+|.+.......++.+.+....... +-.+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 56889999999999999999999876544444333332221111 23478999998
No 333
>PRK00098 GTPase RsgA; Reviewed
Probab=98.91 E-value=4.9e-09 Score=78.15 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=60.2
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
..++|.+++|+|+.++++.......|...+.. .++|+++|+||+|+.+.. ...++...+ +..+++++.+||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEeC
Confidence 58999999999998887766654444444443 578999999999996321 111222222 122457889999
Q ss_pred cCCCCHHHHHHHHHH
Q 030187 161 TSGEGLYEGLDWLSN 175 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~ 175 (181)
+++.|++++++.+..
T Consensus 150 ~~g~gi~~L~~~l~g 164 (298)
T PRK00098 150 KEGEGLDELKPLLAG 164 (298)
T ss_pred CCCccHHHHHhhccC
Confidence 999999999987753
No 334
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.91 E-value=4.5e-09 Score=75.05 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=67.6
Q ss_pred ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCCC
Q 030187 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+-..++..+.++|+.+|++|+..-+..|...+....++|+|+..++- ..+++....+..+..+.-+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 56666777888899999999999999999999999999999999976521 24455555666666666667
Q ss_pred CCeEEEEEeCCCCC
Q 030187 118 DAVLLVFANKQDLP 131 (181)
Q Consensus 118 ~~piivv~nK~D~~ 131 (181)
.+.+|+++||-|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 78899999999985
No 335
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.2e-08 Score=76.24 Aligned_cols=115 Identities=21% Similarity=0.225 Sum_probs=75.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEE---------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY--------------------------------- 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~--------------------------------- 58 (181)
.+.=|+++|+-..|||||++.|....++. ..||.+.-.....+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 44579999999999999999999877652 33333321110000
Q ss_pred -----cC---EEEEEEEcCCCC-----------CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 030187 59 -----KN---ISFTVWDVGGQD-----------KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
Q Consensus 59 -----~~---~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
.+ -.++++||||-- .|......+..+||.++++||+...+--.+....+..+..+ .=
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence 00 138999999932 23445677888999999999987544334444444444333 23
Q ss_pred eEEEEEeCCCCCCCC
Q 030187 120 VLLVFANKQDLPNAM 134 (181)
Q Consensus 120 piivv~nK~D~~~~~ 134 (181)
.+-+|+||.|..+++
T Consensus 213 kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQ 227 (532)
T ss_pred eeEEEeccccccCHH
Confidence 478899999988763
No 336
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=1.2e-07 Score=67.51 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=55.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--ccc-CccceeEEEEEEcCEEEEEEEcCCCCCcc-------ccccccccC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 84 (181)
.-.-+++++|-|.+|||||+..+...... .+. .|...-...+.+.+.++++.|.||--+.. ...-...+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 34469999999999999999988654311 111 11111112355678899999999832211 122345678
Q ss_pred ccEEEEEEECCCccc
Q 030187 85 TQGLIFVVDSNDRDR 99 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s 99 (181)
||.+++|.|++..+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999986543
No 337
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.89 E-value=2.5e-09 Score=75.13 Aligned_cols=133 Identities=26% Similarity=0.425 Sum_probs=89.7
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (181)
.||.|+..+.++..++.|++.|++|+..-+..|.+.+.+.-.+++++.++ +....++....+.-++...-
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 35777777778888899999999999999999999888888777766543 33445555566666666666
Q ss_pred CCCCeEEEEEeCCCCCCCCCH-----------------hHHHhhhCCC-----cccC-cceEEEEecccCCCCHHHHHHH
Q 030187 116 LRDAVLLVFANKQDLPNAMNA-----------------AEITDKLGLH-----SLRQ-RHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~~~~-----------------~~~~~~~~~~-----~~~~-~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
..+.++|+++||.|+.++... ....+.+-+. .-.. +-+.-+.++|.+-+|+.-+|..
T Consensus 264 F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAA 343 (359)
T ss_pred ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHH
Confidence 678899999999998753111 1111111110 0001 1122234788888999999988
Q ss_pred HHHHhh
Q 030187 173 LSNNIA 178 (181)
Q Consensus 173 l~~~l~ 178 (181)
..+.+.
T Consensus 344 VkDtiL 349 (359)
T KOG0085|consen 344 VKDTIL 349 (359)
T ss_pred HHHHHH
Confidence 877664
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.86 E-value=1.6e-08 Score=76.67 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=63.5
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..|+|.+++|++.....++..+..|+.... . .++|.++|+||+|+.............. .++..+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 356999999999887778888888766443 2 5788999999999976432112211111 112234578999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030187 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~ 176 (181)
++.|++++++.|...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988754
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.86 E-value=1.5e-08 Score=75.26 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.9
Q ss_pred cccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+........... ...+++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34578999999999999887 77777776655433 478999999999997542111111111 113457889
Q ss_pred ecccCCCCHHHHHHHHHH
Q 030187 158 TCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~ 175 (181)
+||+++.|+++++..|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887754
No 340
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.84 E-value=7.6e-09 Score=75.97 Aligned_cols=148 Identities=19% Similarity=0.180 Sum_probs=91.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEc-CEEEEEEEcCCCC---------Cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~---------~~~~~~~~~~ 82 (181)
...-|.++|-+|+|||||++.|.+.... ..-.|.+.+....... +..+.+.||-|-- -|++... ..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence 4568999999999999999999854432 1223444444333333 3567888999832 2333322 34
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+|.++-|.|++.|+--+.....+ ..+.+...+..| ++=|=||.|...... ..+..+ -+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e~E~n~--~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------EEEKNL--DVGI 321 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhccccccccccC-----------ccccCC--cccc
Confidence 6799999999999886443333332 333443333333 344556666543211 111111 3478
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++|+|++++++.+-.++.
T Consensus 322 saltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccCccHHHHHHHHHHHhh
Confidence 99999999999998877654
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=1.2e-08 Score=67.91 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=36.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccc--eeEEEEEEcCEEEEEEEcCCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~ 71 (181)
+++++|.+|+|||||+|++.+........+.+ .....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999877543222222 2222333333 6799999994
No 342
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.6e-08 Score=79.69 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=81.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-----c---c-------------cccCccceeEEEEEEcCEEEEEEEcCCCCCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-----I---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-----~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (181)
+.-+|.++-+-.+||||+.++..... + . ....|+...-..+.+.+.+++++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 44589999999999999999986421 0 0 1122333334457778899999999999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.-.....++-.|+.++|+++... -.......|.++.+ -+.|.+..+||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccc-eehhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 99888899999999999997532 11233345656555 378999999999975
No 343
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=2.8e-08 Score=70.21 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=67.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc----------ccCccceeEE--EEEEcC--EEEEEEEcCCCCCcc---cc-
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIR---PL- 77 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----------~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~---~~- 77 (181)
=.|+|+|+|.+|.||||++|.++...... ...|+.+... .+..++ .+++++||||--+.. +.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 45899999999999999999997654321 1123333322 233333 578899999932111 01
Q ss_pred ----------------------ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 78 ----------------------WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 78 ----------------------~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+...+ .++++++|.+.++ ..++.-+.-.+..-+.. -..++-|+-|.|....
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 11111 2467888888776 34444444333332321 2347889999997654
Q ss_pred C
Q 030187 134 M 134 (181)
Q Consensus 134 ~ 134 (181)
+
T Consensus 200 e 200 (336)
T KOG1547|consen 200 E 200 (336)
T ss_pred H
Confidence 3
No 344
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=3.9e-08 Score=66.47 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=39.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE-EEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G 70 (181)
...+++++|.+|+||||++|++.+.......++.+.+... +...+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 4578999999999999999999977655545555544321 111234789999998
No 345
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.1e-08 Score=73.28 Aligned_cols=144 Identities=20% Similarity=0.185 Sum_probs=92.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc-------CC---cc--cccC-----ccceeEEE--EEEcCEEEEEEEcCCCCCc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL-------GE---IV--TTIP-----TIGFNVET--VEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~-------~~---~~--~~~~-----t~~~~~~~--~~~~~~~~~i~D~~G~~~~ 74 (181)
++.+++|.-+|+...|||||...+.. .+ +. +..| .+.++... ++.....+-=.|+|||.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 34678999999999999999877632 11 11 1111 22233333 4445567778899999999
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCccc
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-----EITDKLGLHSLR 149 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-----~~~~~~~~~~~~ 149 (181)
-..+.....+-|+.|+|+.++|..=-+. ++-+ -+.++.. =..+++++||.|..++.+.- ++.+.+....+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHl-LLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHL-LLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcch-HHHH-HHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9988888888999999999986532222 2111 1122222 14588899999998553322 233344444555
Q ss_pred CcceEEEEeccc
Q 030187 150 QRHWYIQSTCAT 161 (181)
Q Consensus 150 ~~~~~~~~~Sa~ 161 (181)
.-+.|++.-||.
T Consensus 207 Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 207 GDNTPVIRGSAL 218 (449)
T ss_pred CCCCCeeecchh
Confidence 667788888865
No 346
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.9e-08 Score=79.98 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=78.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC------------c---ccccCccceeEEE----EEEcCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE------------I---VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~------------~---~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~ 76 (181)
..-++.++.+...|||||...|.... | .+...+.+++... ...+++.++++|+|||.+|..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 34589999999999999999996432 1 2334455554322 223678999999999999999
Q ss_pred cccccccCccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 77 LWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
......+-+|++++++|+.+ +++..-+++.|.+ +...++|+||+|.
T Consensus 88 evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkidr 136 (887)
T KOG0467|consen 88 EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhhh
Confidence 99999999999999999853 3344444444433 4557999999993
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.73 E-value=1.2e-08 Score=73.37 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=92.4
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc--ccCccceeEE--EEEEcCEEEEEEEcCCC----------CCccccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYKNISFTVWDVGGQ----------DKIRPLW 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~~~~~~~i~D~~G~----------~~~~~~~ 78 (181)
++.+...+++.|.+|+|||+|+|.+....... ..++.+.+.. .+.. +-.+.+.|.||. .++....
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-cceEEEEecCCcccccCCccCcchHhHhH
Confidence 45677999999999999999999998766431 1112222111 1222 347889999992 2333444
Q ss_pred cccccCcc---EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhh-C-CCc
Q 030187 79 RHYFQNTQ---GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKL-G-LHS 147 (181)
Q Consensus 79 ~~~~~~~d---~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~~~~~~~~-~-~~~ 147 (181)
..|+-+-+ .+++.+|++- +++....-..+++.+ .+.|+.+|.||+|...... ...+...+ . ...
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 45544433 4555556542 344444444455555 5799999999999764321 11111100 0 011
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.-....+++.+|+.++.|+++++-.+..
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 1122345677999999999998766543
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=6.8e-08 Score=65.40 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=58.1
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
.+.++|.+++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+......+...+... .....+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 35789999999999875321 122233333221 2458999999999997543333333333321 1223578999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030187 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l 177 (181)
+++.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999987653
No 349
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.71 E-value=5.1e-08 Score=72.41 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=40.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE--EEEEcCEEEEEEEcCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~ 72 (181)
...++++++|.||+|||||+|.|.+.......+..+.+.. .+... -.+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 3568999999999999999999998775443433333222 23222 358899999963
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.70 E-value=4.6e-08 Score=67.20 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=38.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccce--eEEEEEEcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~ 71 (181)
...++++++|.+|+|||||+|++.+.......+..+. ....+..+ ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3457999999999999999999998765332222222 22223332 46889999984
No 351
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=1.6e-08 Score=77.33 Aligned_cols=97 Identities=25% Similarity=0.275 Sum_probs=62.5
Q ss_pred CCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHh----hhCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITD----KLGL 145 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~----~~~~ 145 (181)
+++|+.+...+.+.++++++|+|+.+... .....+.+.. .+.|+++|+||+|+.... ..+.+.. ....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 45788888888899999999999975431 1122222222 257899999999986542 2222211 1111
Q ss_pred CcccCcceEEEEecccCCCCHHHHHHHHHHH
Q 030187 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 176 (181)
.... ...++.+||++|.|++++++.|.+.
T Consensus 123 ~g~~--~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLK--PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCC--cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1110 1137789999999999999998653
No 352
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.69 E-value=4.6e-08 Score=73.62 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=41.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE--EEEcCEEEEEEEcCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQD 72 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~ 72 (181)
....+++|+|-||+||||+||+|.+.......+..|.+-.. +... -.+.++||||--
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-DGIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-CCeEEecCCCcC
Confidence 45689999999999999999999998865544444443322 3222 248999999943
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.69 E-value=9.4e-08 Score=64.58 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=53.3
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
|.+++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.......++...+... .+..++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 68999999987654432 2222 22222 478999999999996543222222222111 12357789999999
Q ss_pred CHHHHHHHHHHH
Q 030187 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 ~v~~~~~~l~~~ 176 (181)
|++++++.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988664
No 354
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=7.1e-09 Score=78.58 Aligned_cols=122 Identities=20% Similarity=0.159 Sum_probs=87.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC-----------------cc----cccCccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE-----------------IV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~-----------------~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
-+|.++.+..+||||...|+..-. |. +...|+...-..+++++.+++++||||+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 489999999999999999985311 10 122344444556888999999999999999999
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG 144 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~~~~~~~~ 144 (181)
.....++-.|+++.|||++..-.-+.+ ..|.+. ...++|-+.++||+|..... ..+.+.+.++
T Consensus 118 everclrvldgavav~dasagve~qtl-tvwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCccccee-eeehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 999999999999999998744222332 334333 23589999999999986543 2334444444
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.68 E-value=4.6e-08 Score=72.28 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=38.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 71 (181)
...++++++|.||+|||||+|+|.+.......+..+.+. ..+... -.+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 356899999999999999999999876433333222221 223332 25799999996
No 356
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=4.3e-08 Score=68.48 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=35.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--------cccCcccee--EEEEEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--------TTIPTIGFN--VETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------~~~~t~~~~--~~~~~~~~~~~~i~D~~G 70 (181)
+..+++++|.+|+|||||+|.|.+.... ...+..+.+ ...+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 111111222 22232332 579999998
No 357
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2.5e-07 Score=69.49 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=89.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-------------------cccC-----ccceeE--EEEEE------------
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIP-----TIGFNV--ETVEY------------ 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-------------------~~~~-----t~~~~~--~~~~~------------ 58 (181)
.++++++|...+|||||+--|..++.. ...+ +++++. .-+++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 369999999999999999887543211 1111 112111 01111
Q ss_pred cCEEEEEEEcCCCCCcccccccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 136 (181)
..--+.++|.+|+.+|.......+. ..|..++|+++........-.. +--+.. .++|+.++++|+|+.++...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHHH----hCCCeEEEEEeeccccchhH
Confidence 1234889999999999887654444 3788899998875443322111 111111 47999999999999876433
Q ss_pred hHHHhhh----C---CC------------------cccCcceEEEEecccCCCCHHHH
Q 030187 137 AEITDKL----G---LH------------------SLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 137 ~~~~~~~----~---~~------------------~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+...+.+ . .. ...+.-.|+|.+|+.+|+|++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 2222111 1 00 00123468999999999998654
No 358
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.65 E-value=6.6e-07 Score=64.11 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=56.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc----cccCccceeEEEEEE---cCEEEEEEEcCCCCCccc------ccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV----TTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~----~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~------~~~ 79 (181)
.+-.-|.|+|++++|||+|+|+|.+. .+. ....|.++..+.... .+..+.++||+|-..... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34467899999999999999999988 543 123356665554444 357899999999543322 122
Q ss_pred ccccC--ccEEEEEEECCCcc
Q 030187 80 HYFQN--TQGLIFVVDSNDRD 98 (181)
Q Consensus 80 ~~~~~--~d~~ilv~d~~~~~ 98 (181)
..+.- ++.+|+..+....+
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 22233 78888888766443
No 359
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.6e-07 Score=72.08 Aligned_cols=148 Identities=14% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc------------ccc---------C-----------ccc------
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV------------TTI---------P-----------TIG------ 50 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~------------~~~---------~-----------t~~------ 50 (181)
+.+...+++-||++.|..++||||++|.+...+.. ... . |+.
T Consensus 101 i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL 180 (749)
T KOG0448|consen 101 IDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHAL 180 (749)
T ss_pred HHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhc
Confidence 44567788999999999999999999999653210 000 0 000
Q ss_pred --------eeEEEEEEcC-------EEEEEEEcCCCC---CccccccccccCccEEEEEEECCCcccHHHHHHH-HHHHh
Q 030187 51 --------FNVETVEYKN-------ISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDE-LHRML 111 (181)
Q Consensus 51 --------~~~~~~~~~~-------~~~~i~D~~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~-~~~~~ 111 (181)
....++-+++ -.+.++|.||-. ....-...+.-++|++|+|.++.+ .+...... +....
T Consensus 181 ~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 181 KPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVS 258 (749)
T ss_pred CcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhh
Confidence 0000111110 147789999954 333334566678999999999843 34333332 33333
Q ss_pred cCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhh---hCCCcccCcceEEEEecccC
Q 030187 112 NEDELRDAVLLVFANKQDLPNAM--NAAEITDK---LGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 112 ~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~ 162 (181)
. .++.+.++.||.|....+ -.+.+.++ ++........-.+|.+||+.
T Consensus 259 ~----~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 259 E----EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred c----cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3 355677777898975432 22333333 33222223333466678553
No 360
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.3e-07 Score=69.74 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=54.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------cccccCccceeEEE----------EE----EcCEEEEEEEcCCCCC--
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVET----------VE----YKNISFTVWDVGGQDK-- 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~----------~~----~~~~~~~i~D~~G~~~-- 73 (181)
.+++.++|.||+|||||+|.+.... |.+-.|..++-+.. +. .....+.++|++|-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999997654 22333433332211 11 1235689999999532
Q ss_pred -----ccccccccccCccEEEEEEECC
Q 030187 74 -----IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 -----~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
.-+.....+|.+|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2334566788999999999975
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=2.2e-07 Score=62.76 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=37.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G 70 (181)
....+++++|.||+|||||+|.+.+.... ...+ |..... +... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCC
Confidence 45689999999999999999999986532 2222 333322 2222 4689999998
No 362
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.9e-08 Score=73.47 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=95.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc------cccCccceeE-----EE------------------------EEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNV-----ET------------------------VEY 58 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~-----~~------------------------~~~ 58 (181)
.+-.++|.-+|+.-.||||++..+.+-... +..-|+...| +. .+.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 456689999999999999999888653210 0000111100 00 000
Q ss_pred ----cC----EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHH--HHhcCCCCCCCeEEEEEeCC
Q 030187 59 ----KN----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 59 ----~~----~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~--~~~~~~~~~~~piivv~nK~ 128 (181)
.. ..+.+.|+|||+-.-+.+.....--|++++++..++++.-....+.+. ++.+ -..++++-||.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNKi 189 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNKI 189 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEechh
Confidence 01 246789999988554443333344678888887765443322222221 1111 34588889999
Q ss_pred CCCCCCCHhHHHhhhC--CCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 129 DLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 129 D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
|+..+....+-.++.. .......+.|++++||.-+.|++-+.++|++++.
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9987643333222221 1222334668999999999999999999999875
No 363
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.56 E-value=1.3e-06 Score=62.72 Aligned_cols=149 Identities=17% Similarity=0.052 Sum_probs=91.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE----EEEcCEEEEEEEcCCCCC------cc-ccccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK------IR-PLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~------~~-~~~~~~~~~~d 86 (181)
-++.++|-|.+||||++..+.+.... ..+....+..+ ......++++.|.||--+ .+ .......+.|+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 38899999999999999999876421 11111112222 334667899999998322 11 12345568899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcC-----------------------------------------------------
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNE----------------------------------------------------- 113 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~----------------------------------------------------- 113 (181)
.+++|.|+-.|-+...+.+.-.+-+..
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence 999999987665444443311111000
Q ss_pred ------CCCC--CCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 114 ------DELR--DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 114 ------~~~~--~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
.... -+|.+.++||.|....+ +..-.+.. ...+.+||..+.|++++++.+-+.+
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsISiE---ELdii~~i-------phavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 219 DDLIDVVEGNRIYVPCIYVLNKIDSISIE---ELDIIYTI-------PHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhhccCceeeeeeeeecccceeeee---ccceeeec-------cceeecccccccchHHHHHHHhhcc
Confidence 0111 36788888888865542 22211222 2567899999999999998876643
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.56 E-value=7.7e-08 Score=66.07 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=58.3
Q ss_pred cccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
.......+.++|.+++|+|+.++..... ..+...+ .+.|.++|+||+|+.+......+.+.+.. ....
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCe
Confidence 3344566789999999999976543211 1122222 24689999999998644222222121111 1235
Q ss_pred EEEecccCCCCHHHHHHHHHHHh
Q 030187 155 IQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 155 ~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
++.+||+++.|++++.+.+.+.+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 67899999999999999988764
No 365
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=3e-07 Score=72.48 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=72.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (181)
..+-++|+||||+||||||..|...-.......+.-.+..+..+...+++.++|.+ ... +.....-||.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhheeEEEeccc
Confidence 45678899999999999999998654333333333334446677788999999832 222 233446799999999985
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
-. |+--.-.+..++..+.. +.++-|+|..|+....
T Consensus 145 fG--fEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 145 FG--FEMETMEFLNILISHGM--PRVLGVVTHLDLFKNP 179 (1077)
T ss_pred cC--ceehHHHHHHHHhhcCC--CceEEEEeecccccCh
Confidence 32 32222234444554332 3377888999997643
No 366
>PRK14974 cell division protein FtsY; Provisional
Probab=98.54 E-value=9.3e-07 Score=66.76 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=75.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--ccc--------------cCccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTT--------------IPTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~--------------~~t~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++.++... .. ... ....++.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 4578999999999999987777531 10 000 00011111100
Q ss_pred EEcCEEEEEEEcCCCCCccccc----ccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...+..+.++||+|........ ... .-++|.+++|.|+............+.+.+ .+--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 1124579999999976533221 111 125789999999875432222222232221 224788999998
Q ss_pred CCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 131 PNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
...-. .-.+....+. |+..++ +|++++++..
T Consensus 292 ~~~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence 65432 2233333333 233344 7888877654
No 367
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.54 E-value=7.5e-07 Score=66.96 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=74.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--cccc--------------CccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTI--------------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~--------------~t~~~~~~~~----------------- 56 (181)
....++++|++|+||||++..+... .. .... ...++.+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999988531 10 0000 0011111111
Q ss_pred EEcCEEEEEEEcCCCCCcccc----ccc--------cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 57 EYKNISFTVWDVGGQDKIRPL----WRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~----~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||||....... ... .-..++..++|.|++... ..+.. ...+... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence 113568999999997643321 111 113478899999998432 22222 2222211 1235788
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+||.|....- ..-.+....+. |+..++ +|++++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~--------Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGI--------PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChhhCc
Confidence 9999976542 22334444443 333344 677776553
No 368
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.52 E-value=5.8e-07 Score=68.31 Aligned_cols=78 Identities=18% Similarity=0.070 Sum_probs=53.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-c-cc--cCccceeEEEEEEc-----------------CEEEEEEEcCCCCCc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI-V-TT--IPTIGFNVETVEYK-----------------NISFTVWDVGGQDKI-- 74 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~-~-~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~-- 74 (181)
.++.++|.|++|||||+|.+.+... . .. ..|+..+...+... ...+.+.|.||-..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987653 2 11 11233333323322 246889999995432
Q ss_pred -----cccccccccCccEEEEEEECC
Q 030187 75 -----RPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 75 -----~~~~~~~~~~~d~~ilv~d~~ 95 (181)
.+.....++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 223556788999999999975
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=1.2e-07 Score=70.02 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=60.0
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
......+.++|.+++|+|+.++.+... ..+.+.+ .+.|+++|+||+|+.+......+.+.+.. .+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 344566788999999999976533221 2233333 25789999999998654222333222211 12357
Q ss_pred EEecccCCCCHHHHHHHHHHHhh
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+||+++.|++++.+.+.+.+.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 78999999999999988877654
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.49 E-value=1.1e-06 Score=64.65 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=75.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--cccc--------------CccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTI--------------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~--------------~t~~~~~~~~----------------- 56 (181)
....|+++|++|+||||.+.++... +. .+.. .-.+......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999998888531 10 0000 0011111100
Q ss_pred EEcCEEEEEEEcCCCCCcccccc-------cc-----ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWR-------HY-----FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||+|......... .. -..+|.+++|+|++.. .+.+. ....+.+.. .+--+|
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~I 223 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGII 223 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEE
Confidence 01347899999999765433211 11 1238999999999743 22222 222222211 235788
Q ss_pred EeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 125 ANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+||.|...... .-.+....+. |+..++ +|++++++-.
T Consensus 224 lTKlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCcc
Confidence 99999865432 2234444443 233334 6777766543
No 371
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.9e-07 Score=67.49 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=78.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-----ccCccceeEEEEEEc----CEEEEEEEcCCC-------CCcccc-
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYK----NISFTVWDVGGQ-------DKIRPL- 77 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~~~----~~~~~i~D~~G~-------~~~~~~- 77 (181)
.=.|+|+.+|..|.|||||+..|++..+.. ..|++.....+++.. .+++++.||.|. ..|..+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 356899999999999999999999877643 334555555555442 267889999992 122111
Q ss_pred ---------------------ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 78 ---------------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 78 ---------------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
....-.+.++++|.+.++ ..++..+......-+. .+..||-++.|.|-.+.
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhH
Confidence 111112467888888877 6788888877766666 36668888889997654
No 372
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.48 E-value=5.6e-07 Score=67.74 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=89.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-------------------ccccCccceeEEEEEE--------------------
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI-------------------VTTIPTIGFNVETVEY-------------------- 58 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~-------------------~~~~~t~~~~~~~~~~-------------------- 58 (181)
.+++|+|+..+|||||+--|.+++. +...++++.++-.|+.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 5999999999999999987765321 1122233333322221
Q ss_pred --c-CEEEEEEEcCCCCCccccc--cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 59 --K-NISFTVWDVGGQDKIRPLW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 59 --~-~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+ ---+.++|.+|+++|.... .+--+-.|...+++-++.. +-.+. .+.+...-....|+.+|.||+|+...
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmT---KEHLgLALaL~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMT---KEHLGLALALHVPVFVVVTKIDMCPA 288 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceecc---HHhhhhhhhhcCcEEEEEEeeccCcH
Confidence 1 1237899999999998753 3444457888888876421 11111 11111111147899999999999876
Q ss_pred CCHhHH----HhhhCCCcc---------------------cCcceEEEEecccCCCCHHHHHH
Q 030187 134 MNAAEI----TDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 134 ~~~~~~----~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+..++- .+.+..+.. ..+-+++|.+|-.+|+|++-+-.
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 544332 222222111 12347899999999999876543
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.46 E-value=6.4e-07 Score=68.07 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=40.1
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccc-----------cCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
+..++.....+ .++++|.+|+|||||+|.|.+...... ..|.......+... ..++||||-..
T Consensus 196 ideL~~~L~~k---i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~ 269 (347)
T PRK12288 196 LEELEAALTGR---ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVRE 269 (347)
T ss_pred HHHHHHHHhhC---CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCc
Confidence 34444444322 479999999999999999997653211 12333333333222 25999999766
Q ss_pred cc
Q 030187 74 IR 75 (181)
Q Consensus 74 ~~ 75 (181)
+.
T Consensus 270 ~~ 271 (347)
T PRK12288 270 FG 271 (347)
T ss_pred cc
Confidence 55
No 374
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.45 E-value=1.1e-06 Score=68.22 Aligned_cols=111 Identities=22% Similarity=0.179 Sum_probs=64.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc------CCc--ccc--------------cCccceeEEEEEE---------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL------GEI--VTT--------------IPTIGFNVETVEY--------------- 58 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~------~~~--~~~--------------~~t~~~~~~~~~~--------------- 58 (181)
.+.-|+++|++|+||||++.+|.. .+. ... ....++.++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356799999999999999999952 110 000 0011222221110
Q ss_pred --cCEEEEEEEcCCCCCccccc----cc--cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 59 --KNISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 59 --~~~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
.++.+.++||+|........ .. ...+++.+++|+|++-...-......+.+. -.+--+|+||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccC
Confidence 25689999999976443221 11 123578899999987543333333333221 2346788999998
Q ss_pred CCC
Q 030187 131 PNA 133 (181)
Q Consensus 131 ~~~ 133 (181)
...
T Consensus 252 ~ar 254 (429)
T TIGR01425 252 HAK 254 (429)
T ss_pred CCC
Confidence 643
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.44 E-value=4.5e-07 Score=60.30 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=47.9
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
..+.++|++++|+|+.++.+.. ...+.+.+.... .++|+++++||+|+.......++.+.+.. .+..++.+|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 4567899999999998765433 112222222221 46899999999998654332233332221 224678899
Q ss_pred ccCCCC
Q 030187 160 ATSGEG 165 (181)
Q Consensus 160 a~~~~~ 165 (181)
|+++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 988654
No 376
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.44 E-value=6.2e-07 Score=66.48 Aligned_cols=80 Identities=26% Similarity=0.337 Sum_probs=55.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEE-----------------cCEEEEEEEcCCCCCcc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY-----------------KNISFTVWDVGGQDKIR 75 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~-----------------~~~~~~i~D~~G~~~~~ 75 (181)
+++++.+||.|++|||||+|.|...... ...| |++.+..++.. -...++++|++|..+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 5689999999999999999999765422 2222 44444444332 13568999999954332
Q ss_pred -------ccccccccCccEEEEEEECC
Q 030187 76 -------PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 -------~~~~~~~~~~d~~ilv~d~~ 95 (181)
+...+.++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 33556778999999988764
No 377
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=8.4e-06 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...+|.+.|+||+||||++.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3458999999999999999998864
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.41 E-value=6e-07 Score=60.54 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-.++++|++|+|||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999998874
No 379
>PRK12289 GTPase RsgA; Reviewed
Probab=98.40 E-value=8.4e-07 Score=67.49 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++|+|++|+|||||+|.|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999998764
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.38 E-value=8.1e-07 Score=60.23 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998654
No 381
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.37 E-value=1.4e-06 Score=63.22 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=40.3
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
+..++..... -.++++|++|+|||||+|.|.+..... ...|.......+ .+ -.++||||-..
T Consensus 111 i~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 111 LKELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred HHHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 3444544332 378999999999999999998754221 112333334333 22 37999999654
Q ss_pred cc
Q 030187 74 IR 75 (181)
Q Consensus 74 ~~ 75 (181)
+.
T Consensus 184 ~~ 185 (245)
T TIGR00157 184 FG 185 (245)
T ss_pred cC
Confidence 43
No 382
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.37 E-value=2e-06 Score=75.00 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=63.0
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeE-EEEEE-cCEEEEEEEcCCCC--------Cccccccccc-
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNV-ETVEY-KNISFTVWDVGGQD--------KIRPLWRHYF- 82 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~-~~~~~-~~~~~~i~D~~G~~--------~~~~~~~~~~- 82 (181)
=.+|+|++|+||||++++- +-.++-. ..+.+..- ..+++ -.-+-.++||+|.- .....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 4799999999999999987 3332211 11111100 01111 11245699999921 1222333332
Q ss_pred --------cCccEEEEEEECCCc-----ccH----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 83 --------QNTQGLIFVVDSNDR-----DRV----VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 --------~~~d~~ilv~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+-.+++|+++|+.+. +.. ..+...+.++..... -..|+.+++||+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence 348999999997532 111 223333444433333 5899999999999874
No 383
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.34 E-value=9.2e-06 Score=64.12 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=59.1
Q ss_pred EEEEEEcCCC-------------CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 62 ~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.+.+.|.||- +....+...++.+++++|+|+--. |.+.-.....++..+..-.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 5778999992 123345678899999999999421 333334444455555554677899999999
Q ss_pred CCCCCC--CHhHHHhhhCCCcccCcceEEEEe
Q 030187 129 DLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 129 D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+.+.+ ....+.+.+.-..+.-.-..||.+
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaV 521 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAV 521 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence 998752 445666666543333333334433
No 384
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.32 E-value=7e-07 Score=62.60 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=60.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc----------------------cccCccceeEEEE-----------------EE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV----------------------TTIPTIGFNVETV-----------------EY 58 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~----------------------~~~~t~~~~~~~~-----------------~~ 58 (181)
..|+++|++|+||||.+-+|...... ......++..... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 35899999999999999888531100 0001122222111 11
Q ss_pred cCEEEEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
++.++.++||+|....... +..+ ....+-+++|.+++....-......+.+.+. +--+++||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~-------~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG-------IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS-------TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc-------CceEEEEeecCCC
Confidence 3467999999997654432 1111 1257889999998744322222222222221 1256799999875
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 4
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.28 E-value=2.6e-06 Score=65.31 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=35.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc-----ccccCccce--eEEEEEEcCEEEEEEEcCCCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGF--NVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
..++.++|.+|+|||||+|.+.+... ....+..+. ....+... -.+.++||||-..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCC
Confidence 36999999999999999999987432 111222222 22223331 2367999999543
No 386
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.27 E-value=1.8e-05 Score=60.79 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+=|.||||..+|||||+.||..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 37799999999999999999964
No 387
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.26 E-value=2e-06 Score=63.95 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=59.6
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
......+..+|++++|+|+.++.+... ..+.+.+. +.|+++|+||+|+.+....+.+.+.+. ..+.++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~v 83 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKA 83 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeE
Confidence 334556788999999999976543221 22333332 578999999999864422223322221 112357
Q ss_pred EEecccCCCCHHHHHHHHHHHhh
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+||+++.|++++.+.+.+.+.
T Consensus 84 i~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 84 LAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 78999999999999998877654
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.24 E-value=1.9e-06 Score=66.11 Aligned_cols=95 Identities=21% Similarity=0.159 Sum_probs=55.1
Q ss_pred CccccccccccCcc-EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH---HHhhh-CCC
Q 030187 73 KIRPLWRHYFQNTQ-GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE---ITDKL-GLH 146 (181)
Q Consensus 73 ~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~---~~~~~-~~~ 146 (181)
.|....... ...+ .+++|+|+.+.. ......+.++. .+.|+++|+||+|+..... .+. +...+ ...
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 344443333 4445 889999987642 11222232322 2578999999999965321 111 21111 111
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
... ...++.+||+++.|++++++.|.+..
T Consensus 130 g~~--~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLR--PVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCC--cCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 110 11477899999999999999987653
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.24 E-value=1e-05 Score=54.26 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=36.4
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
++.+.++||+|..... ..++..+|.++++..++-.+.+.-... ..+.. .=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHhhh------cCEEEEeCCC
Confidence 4678999999865322 347788999999998763333322222 22222 1288899987
No 390
>PRK13796 GTPase YqeH; Provisional
Probab=98.23 E-value=4.6e-06 Score=64.04 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=33.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-----c--ccccCccceeEEEEEEcCEEEEEEEcCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-----I--VTTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-----~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 71 (181)
..++.++|.+|+|||||+|+|.+.. . ....|.+......+...+ ...++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 4589999999999999999998542 1 112221111222232222 2479999995
No 391
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.21 E-value=2.1e-06 Score=66.90 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=43.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 71 (181)
.+.|.+||-||+||||+||.|.+.+-.....|.|-+- .++... -.+.++|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-CCceecCCCCc
Confidence 5899999999999999999999999887777777543 334333 36789999994
No 392
>PRK01889 GTPase RsgA; Reviewed
Probab=98.20 E-value=1.3e-05 Score=61.31 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=54.3
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
..|+|.+++|+++..+-... ....+...+.. .+++.++|+||+|+.+... +........ ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~-~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLR-RIERYLALAWE---SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChh-HHHHHHHHHHH---cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence 57899999999996332322 33333333333 4677789999999975411 111111111 234578899999
Q ss_pred CCCCHHHHHHHHH
Q 030187 162 SGEGLYEGLDWLS 174 (181)
Q Consensus 162 ~~~~v~~~~~~l~ 174 (181)
++.|++++.+++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.18 E-value=6.4e-06 Score=61.25 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=35.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCccccc-----------CccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
-.++++|++|+|||||+|.|.+....... .|.... .+.... ...++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~--~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE--LFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE--EEEcCC-CCEEEECCCCCccC
Confidence 57999999999999999999876432111 122222 222221 23689999987664
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=1.6e-05 Score=60.83 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=65.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc-------c---cccC--------------ccceeEEEEE-----------EcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------V---TTIP--------------TIGFNVETVE-----------YKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~-------~---~~~~--------------t~~~~~~~~~-----------~~~ 60 (181)
+.-.++++|++|+||||++.+|..... . .... ..++....+. ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345899999999999999999864210 0 0000 0111111111 135
Q ss_pred EEEEEEEcCCCCCccccc----cc--cccCccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~ 132 (181)
..+.++||+|........ .. ....+.-.++|++++. .+........+..........- .+--+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 678999999977543321 11 1223456789999874 3444555455544432211100 12357779999865
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 296 ~ 296 (374)
T PRK14722 296 N 296 (374)
T ss_pred C
Confidence 3
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=3.4e-06 Score=62.14 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=35.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCc------c-----cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEI------V-----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~------~-----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
..+++|++|+|||||+|+|.+... + ....|.....+.+...+ .++||||-.++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 788999999999999999987431 1 11223333333333233 689999976654
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.15 E-value=3.3e-05 Score=53.04 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=38.9
Q ss_pred CEEEEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++|++|....... ...+ ....+.+++|+|+..... .......+.+.. + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 456889999997543221 1111 124899999999864432 223333333221 1 25677799997654
No 397
>PRK00098 GTPase RsgA; Reviewed
Probab=98.09 E-value=1.1e-05 Score=60.38 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
...++++|++|+|||||+|.|.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999998764
No 398
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.00 E-value=5.1e-05 Score=59.47 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=60.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC------Cc-----ccccC-----------ccceeEEEEE---------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETVE--------------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~------~~-----~~~~~-----------t~~~~~~~~~--------------- 57 (181)
..+..|+++|++|+||||++..|... .. ....+ ..++..+...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34678999999999999999888431 00 00000 0111111100
Q ss_pred EcCEEEEEEEcCCCCCccccc----c--ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 58 YKNISFTVWDVGGQDKIRPLW----R--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.....+.++||+|........ . .....+|.+++|+|++... ........+... -...-+|+||.|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 012478999999976543221 1 1133589999999987542 222222222111 11235677999975
Q ss_pred C
Q 030187 132 N 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=1.5e-05 Score=61.17 Aligned_cols=124 Identities=17% Similarity=0.177 Sum_probs=66.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--------ccccc--------------CccceeEEEEEE--------------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTTI--------------PTIGFNVETVEY--------------K 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--------~~~~~--------------~t~~~~~~~~~~--------------~ 59 (181)
....|+++|++|+||||++..|...- +.... ...++....... .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34689999999999999999995311 00000 011111111100 1
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++||+|....... ....+ ...+.+++|+|++.. -..+......+.. -.+--+++||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 367999999997643221 12222 236778999987532 1222333322211 1224678899998764
Q ss_pred C-CHhHHHhhhCCC
Q 030187 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
. ..-.+....+++
T Consensus 393 ~G~iLni~~~~~lP 406 (436)
T PRK11889 393 SGELLKIPAVSSAP 406 (436)
T ss_pred ccHHHHHHHHHCcC
Confidence 3 223444444443
No 400
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.95 E-value=4.6e-05 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|++.|+||+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.94 E-value=2.7e-05 Score=59.90 Aligned_cols=111 Identities=23% Similarity=0.192 Sum_probs=67.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC------C--------cc--------cccCccceeEEEE---------------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG------E--------IV--------TTIPTIGFNVETV--------------- 56 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~------~--------~~--------~~~~t~~~~~~~~--------------- 56 (181)
.+.+..|+++|..|+||||.+-.|... + +. .....+++.++..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 456788999999999999998887431 0 00 0001222222221
Q ss_pred --EEcCEEEEEEEcCCCCCcccccc------ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 57 --EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 57 --~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
....+.+.++||+|.-......- .-.-++|-+++|+|+.-.+...+....+.+.+.. -=+|+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence 11246799999999765543321 1234689999999998665555555555555443 24556677
Q ss_pred CCC
Q 030187 129 DLP 131 (181)
Q Consensus 129 D~~ 131 (181)
|..
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 654
No 402
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.93 E-value=3.9e-05 Score=56.64 Aligned_cols=92 Identities=24% Similarity=0.197 Sum_probs=62.6
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEe
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..-..+.|-.++|+.+.+|+--..+...+.-.++. .++.-++++||+|+.+.+.... ......+...+++.+.+
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFV 147 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEe
Confidence 33445578888888888776555555555444444 4666788899999998755443 11112233456788999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030187 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~ 176 (181)
|++++.|++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998877654
No 403
>PRK13695 putative NTPase; Provisional
Probab=97.91 E-value=0.00033 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998643
No 404
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=5.3e-05 Score=60.31 Aligned_cols=111 Identities=21% Similarity=0.289 Sum_probs=60.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC--------Cc--ccccC--------------ccceeEEEEE-----------EcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG--------EI--VTTIP--------------TIGFNVETVE-----------YKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~--------~~--~~~~~--------------t~~~~~~~~~-----------~~~ 60 (181)
..-.|+++|++|+||||++..|... +. ....+ ..++...... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4568999999999999999888531 11 01000 1111111111 134
Q ss_pred EEEEEEEcCCCCCccccccc---ccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRH---YFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
..+.++||+|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 67999999997543322110 010 1235677777753 23344433333322 2356789999998543
No 405
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.91 E-value=7.3e-05 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++-.+|+||.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46789999999999999999853
No 406
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.90 E-value=0.0001 Score=45.14 Aligned_cols=97 Identities=20% Similarity=0.120 Sum_probs=55.3
Q ss_pred EEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc-ccccccCccEEEEEEECCCcc
Q 030187 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~ilv~d~~~~~ 98 (181)
+++.|.+|+||||+...+...--. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 678899999999999888643211 111222222 7899999987644431 13445679999999987632
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 99 RVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+.........+..........+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322222222223445555543
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.90 E-value=0.00012 Score=56.08 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=62.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc-ccccCcc-----------------------ceeEEEEE-----------EcCE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTI-----------------------GFNVETVE-----------YKNI 61 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~-----------------------~~~~~~~~-----------~~~~ 61 (181)
+-.|++|||+|+||||-+.+|..... ......+ ++...-+. ..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 67899999999999999888854322 0111111 11111111 1346
Q ss_pred EEEEEEcCCCCCcccc----cccccc--CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 62 SFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++||.|...+... ...++. ...-+.+|++++.. ...+...+..+.. -..--+++||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----FPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----CCcceeEEEcccccCc
Confidence 7999999998766543 223322 23456678887643 2344443433321 1223677899997754
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.88 E-value=1.7e-05 Score=54.85 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=41.6
Q ss_pred CEEEEEEEcCCCCCcccc--cc---ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL--WR---HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~--~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.....++++.|...-... .. ...-..+.++.|+|+.+-.........+.+.+.... ++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 356788899996555444 00 012246889999999654333444445555555433 8899999987654
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=97.87 E-value=0.0001 Score=57.70 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=41.5
Q ss_pred CEEEEEEEcCCCCCccccc----cc--cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.++||+|........ .. ..-.++.+++|+|+... +........+.... ...-+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 4679999999965432211 11 11257888999998643 23333333332211 123567799996543
Q ss_pred C-CHhHHHhhhC
Q 030187 134 M-NAAEITDKLG 144 (181)
Q Consensus 134 ~-~~~~~~~~~~ 144 (181)
. ....+....+
T Consensus 256 gG~alsi~~~~~ 267 (433)
T PRK10867 256 GGAALSIRAVTG 267 (433)
T ss_pred ccHHHHHHHHHC
Confidence 2 2334444444
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.84 E-value=0.00012 Score=57.23 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=42.8
Q ss_pred CEEEEEEEcCCCCCccccccc------cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRH------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
++.+.++||+|.......... ..-+++.+++|+|+... +........+.... ...-+|.||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 467899999996543221111 12357899999998744 23333333332211 123666899996443
Q ss_pred C-CHhHHHhhhCC
Q 030187 134 M-NAAEITDKLGL 145 (181)
Q Consensus 134 ~-~~~~~~~~~~~ 145 (181)
. ....+....+.
T Consensus 255 ~G~~lsi~~~~~~ 267 (428)
T TIGR00959 255 GGAALSVRSVTGK 267 (428)
T ss_pred ccHHHHHHHHHCc
Confidence 2 23344444443
No 411
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.81 E-value=2.7e-05 Score=55.20 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=38.2
Q ss_pred EEEEEEEcCCCCCccccc------cccccCccEEEEEEEC------CCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeC
Q 030187 61 ISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDS------NDRDRVVEAR-DELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~~ilv~d~------~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK 127 (181)
-.+.++|.|||.++.... -..+...+.-+.++++ ++|..|-+.. ..+..++. -..|-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhhH
Confidence 458899999987644321 1223345554444443 3555553333 23333333 35666778899
Q ss_pred CCCCC
Q 030187 128 QDLPN 132 (181)
Q Consensus 128 ~D~~~ 132 (181)
+|+..
T Consensus 173 ~Dl~~ 177 (290)
T KOG1533|consen 173 ADLLK 177 (290)
T ss_pred hHHHH
Confidence 99864
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=3.8e-05 Score=59.48 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=64.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC-------c--cccc--------------CccceeEEEE----------EEcCEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE-------I--VTTI--------------PTIGFNVETV----------EYKNISF 63 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~-------~--~~~~--------------~t~~~~~~~~----------~~~~~~~ 63 (181)
..-++++|++|+||||++.+|.... . .+.. ...++..... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999999986421 0 0000 0111111111 1135678
Q ss_pred EEEEcCCCCCcccc----cccccc-----CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 64 TVWDVGGQDKIRPL----WRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 64 ~i~D~~G~~~~~~~----~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.++||+|....... +..+++ ...-.++|+|++... ..+......+ .. -.+--+|+||.|....-
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence 99999997532211 122111 245688999987442 2232222222 21 12346788999986543
Q ss_pred -CHhHHHhhhCC
Q 030187 135 -NAAEITDKLGL 145 (181)
Q Consensus 135 -~~~~~~~~~~~ 145 (181)
..-.+....++
T Consensus 376 G~il~i~~~~~l 387 (432)
T PRK12724 376 GSFLELADTYSK 387 (432)
T ss_pred cHHHHHHHHHCC
Confidence 22334444444
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=2e-05 Score=61.23 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=60.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcc-------c--ccC---------------ccceeEEE-----------EEEcCE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIV-------T--TIP---------------TIGFNVET-----------VEYKNI 61 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~-------~--~~~---------------t~~~~~~~-----------~~~~~~ 61 (181)
.-.++++|++|+||||++..|.+.... . ... -.++.... ....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999988542100 0 000 01111111 011345
Q ss_pred EEEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 62 SFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++||+|....... ...+ .....-.++|+|++.. .+.+......+.. -.+--+++||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence 6899999997653221 1221 1234568899998732 2233333322211 1234677899997654
No 414
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.79 E-value=1.5e-05 Score=60.40 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=41.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 71 (181)
++++++.|+|-|++||||+||+|.........++.+++. ..+..+ -.+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCce
Confidence 577999999999999999999998887655455444432 223333 46899999993
No 415
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.79 E-value=2.1e-05 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 416
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.76 E-value=1.2e-05 Score=61.12 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=58.5
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE-EEEEEcCEEEEEEEcCCCCCcc--cccccc
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDKIR--PLWRHY 81 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~i~D~~G~~~~~--~~~~~~ 81 (181)
|+.|-.=...+.++.|.+||-|++||||+||.|...+.....|-.+.+- +.+-.---.+-++|+||-..-. ......
T Consensus 295 lRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv 374 (572)
T KOG2423|consen 295 LRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV 374 (572)
T ss_pred HHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH
Confidence 3444444567889999999999999999999999888766555444321 1111112357789999954222 222222
Q ss_pred ccCccEEEEEEECCCccc
Q 030187 82 FQNTQGLIFVVDSNDRDR 99 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s 99 (181)
..+++-|=++.+++.
T Consensus 375 ---LkGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 375 ---LKGVVRVENVKNPED 389 (572)
T ss_pred ---hhceeeeeecCCHHH
Confidence 346677777776653
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00025 Score=55.61 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=58.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC------c----ccccC--------------ccceeEEEE-----------EEcCEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE------I----VTTIP--------------TIGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~------~----~~~~~--------------t~~~~~~~~-----------~~~~~~ 62 (181)
-.++++|++|+||||++..|...- . .+..+ ..++..... ...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 478999999999999887774311 0 01111 011111100 012467
Q ss_pred EEEEEcCCCCCccc----ccccccc---CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 63 FTVWDVGGQDKIRP----LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~i~D~~G~~~~~~----~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.++||+|...... ....++. ...-+++|++++.. ...+...+..+... . +--++.||.|....
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETSS 372 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEeccccccc
Confidence 99999999765431 1222222 34577888888532 23333333332111 1 23688999998654
No 418
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00012 Score=60.71 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccc---------cC---------------ccceeEEEE-----------EEcCEE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---------IP---------------TIGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~---------~~---------------t~~~~~~~~-----------~~~~~~ 62 (181)
--++++|+.|+||||.+..|........ .. -.++..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4689999999999999998864220000 00 011111100 013457
Q ss_pred EEEEEcCCCCCcccc----cccc--ccCccEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 63 FTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 63 ~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+.++||+|....... .... ....+-.++|+|++. .+.+.+....+...... .+-=+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCC
Confidence 999999996543221 1111 234667899999873 33444444444332110 123677899998754
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=8.7e-05 Score=54.56 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=66.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC----c----cc--------------ccCccceeEEEEE--------------Ec
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE----I----VT--------------TIPTIGFNVETVE--------------YK 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~----~----~~--------------~~~t~~~~~~~~~--------------~~ 59 (181)
+.-+++++|++|+||||++..+...- . .. .....++...... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 34699999999999999988774321 0 00 0001122211100 12
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++||+|....... +...+ ...+-+++|+|++.. .+.+......+.. -.+--+++||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 468999999997743322 11221 246678999998632 2233333333311 2234678999998764
Q ss_pred CC-HhHHHhhhCC
Q 030187 134 MN-AAEITDKLGL 145 (181)
Q Consensus 134 ~~-~~~~~~~~~~ 145 (181)
.. .-.+....+.
T Consensus 227 ~G~~l~~~~~~~~ 239 (270)
T PRK06731 227 SGELLKIPAVSSA 239 (270)
T ss_pred ccHHHHHHHHHCc
Confidence 32 2234444443
No 420
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.72 E-value=0.00044 Score=52.20 Aligned_cols=91 Identities=18% Similarity=0.096 Sum_probs=47.3
Q ss_pred EEEEEEEcCCCCCccccccc-----c---ccCccEEEEEEECCCccc-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRH-----Y---FQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~-----~---~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
....++++.|-..-.+.... . .-..|+++-|+|+..-.. .........+.+... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 56788889885443222111 1 123688999999864322 121222222222221 28999999999
Q ss_pred CCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
++...+.+....... +...+++.+|.
T Consensus 159 ~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 875433322222111 22335666665
No 421
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=9.8e-05 Score=56.56 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=65.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--------cccc--------------cCccceeEEEEEE--------------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTT--------------IPTIGFNVETVEY--------------K 59 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--------~~~~--------------~~t~~~~~~~~~~--------------~ 59 (181)
..-.++++|++|+||||++.++...- +.+. ....++.+..... .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 34578999999999999999885311 0000 0011111111100 2
Q ss_pred CEEEEEEEcCCCCCcccc----ccccc--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
+..+.++||+|....... ...+. ...+.+++|.+++ .....+...+..+ . .-.+--+|+||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f-~----~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL-A----EIPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc-C----cCCCCEEEEEcccCCCC
Confidence 468999999998654322 11222 1346667777763 2233333333221 1 12234777999998754
Q ss_pred C-CHhHHHhhhCCC
Q 030187 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
- ..-.+....+++
T Consensus 358 ~G~~Lsv~~~tglP 371 (407)
T PRK12726 358 IGDLYTVMQETNLP 371 (407)
T ss_pred ccHHHHHHHHHCCC
Confidence 3 223444444443
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00063 Score=52.63 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=62.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC---------C-c--ccc--------------cCccceeEEEEE-----------Ec
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG---------E-I--VTT--------------IPTIGFNVETVE-----------YK 59 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~---------~-~--~~~--------------~~t~~~~~~~~~-----------~~ 59 (181)
...|+++|++|+||||.+.++... . . .+. ..-.++...... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 458999999999999999888531 1 0 000 001111111111 13
Q ss_pred CEEEEEEEcCCCCCccc----cccccccC---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRP----LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+..+.++||+|...... .....+.. ..-.++|+|++.. ...+...+..+.. -.+--+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 57899999999764332 11222222 2368899999754 3334344444321 123467889999865
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 4
No 423
>PRK08118 topology modulation protein; Reviewed
Probab=97.69 E-value=3.3e-05 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 424
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.69 E-value=9.2e-05 Score=55.83 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEEEEEcCCCCCcccccccccc--------CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
....++++.|...-..+...+.. ..++++.|+|+.+-.............+.. . =++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---A---D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---A---DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---C---CEEEEeccccCC
Confidence 56788899997654444332211 258899999986321111101111122222 1 288999999875
Q ss_pred C
Q 030187 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 3
No 425
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.67 E-value=3.6e-05 Score=53.16 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|+|||||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999765
No 426
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.65 E-value=3.9e-05 Score=50.84 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+++|+|||||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 427
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.65 E-value=9e-05 Score=40.71 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=27.0
Q ss_pred cCccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
+-++++++++|++..+ +.+.....+.++... .+++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 3478999999998655 556665555555433 24899999999998
No 428
>PRK07261 topology modulation protein; Provisional
Probab=97.64 E-value=4.3e-05 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 429
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=3e-05 Score=60.73 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=71.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------------Cccc---ccCccceeEEE--------------------EEEcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------------EIVT---TIPTIGFNVET--------------------VEYKN 60 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------------~~~~---~~~t~~~~~~~--------------------~~~~~ 60 (181)
+--++.|+.+...|||||...|... ++++ ..+..++++.. -+..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 3458899999999999999999532 1211 11111121110 01134
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+-++++|.|||.+|.+..-..++-.|+.+.|+|.-+. +- .....+.+.+.+ .+.-+++.||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV--QTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV--QTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe--chHHHHHHHHHh----hccceEEeehhhHH
Confidence 7789999999999999999999999999999996432 21 112233333332 34447788999954
No 430
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.60 E-value=0.0002 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
.++.|--|+|||||++++...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 677899999999999999753
No 431
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.59 E-value=0.0003 Score=43.99 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=48.4
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCcccccCccceeEEEEEEc-CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 20 ILMVGL-DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 20 i~v~G~-~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
|++.|. .|+||||+...+...-... +....-++.+ .+.+.++|+|+...... ...+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-H
Confidence 567775 6999999987775322111 1111111111 16789999998654332 25667799999999875 4
Q ss_pred ccHHHHHHHH
Q 030187 98 DRVVEARDEL 107 (181)
Q Consensus 98 ~s~~~~~~~~ 107 (181)
.++.......
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 432
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00019 Score=54.63 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=55.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--------------Ccc--------cccCccceeEE-----------------E
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--------------EIV--------TTIPTIGFNVE-----------------T 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--------------~~~--------~~~~t~~~~~~-----------------~ 55 (181)
.++--|+++|..|+||||.+-.|... .|. ....-.++.++ .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 35567899999999999998888431 010 00001111111 1
Q ss_pred EEEcCEEEEEEEcCCCCCcccc-cc-----ccccCccEEEEEEECCCcccHHHHHHHHHHH
Q 030187 56 VEYKNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110 (181)
Q Consensus 56 ~~~~~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 110 (181)
+...++.+.+.||.|.-.-... .. .-.-++|-+|+|.|++-...-.....-+.+.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 2235688999999996432221 11 1123589999999997555444444444443
No 433
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.56 E-value=0.00042 Score=43.65 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=54.4
Q ss_pred EEEEcC-CCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 20 ILMVGL-DAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 20 i~v~G~-~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
|+++|. .|+||||+.-.|...-... ...+.-.+.... .+-.+.++|+|+..... ....+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-h
Confidence 445554 7999999877774321111 000000000000 11278999999865432 234567899999999876 3
Q ss_pred ccHHHHHHHHHHHhcCCCCC-CCeEEEEEeC
Q 030187 98 DRVVEARDELHRMLNEDELR-DAVLLVFANK 127 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~-~~piivv~nK 127 (181)
.++.........+.+. ..+ ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 3444444444333222 222 3456677765
No 434
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.55 E-value=9.9e-05 Score=54.48 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=36.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-----cccccCccceeEEE---EEE-cCEEEEEEEcCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVET---VEY-KNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-----~~~~~~t~~~~~~~---~~~-~~~~~~i~D~~G~ 71 (181)
..++++|+|-||+|||||+|.+.... .....+..+++... +.. ....+.++||||-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 56899999999999999999885432 11222222332211 222 3346889999993
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.00013 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.--++++|++|+||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999864
No 436
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.52 E-value=8.6e-05 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998755
No 437
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.51 E-value=9.7e-05 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++||+|||||||++++.+-+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 468999999999999999997654
No 438
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.001 Score=57.75 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=60.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCccc-----ccCccceeEEEEEE-cCEEEEEEEcCCCCC--------cccccccc---
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEY-KNISFTVWDVGGQDK--------IRPLWRHY--- 81 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~--------~~~~~~~~--- 81 (181)
=-+|||+||+||||++..--. +++- .....+.....+++ -.-+-.++||+|.-. -...|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 358999999999999865432 2221 01111110111111 123567899998321 12223322
Q ss_pred ------ccCccEEEEEEECCCc---c-cH-----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 82 ------FQNTQGLIFVVDSNDR---D-RV-----VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ------~~~~d~~ilv~d~~~~---~-s~-----~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+-.+++|+.+|+++. + .. ..+...+.++-.... -..|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccc
Confidence 3457999999997532 1 11 112223333333222 4789999999999875
No 439
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.00031 Score=52.52 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=71.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--------------cc----c----ccCccceeEEE--------------EE-
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--------------IV----T----TIPTIGFNVET--------------VE- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--------------~~----~----~~~t~~~~~~~--------------~~- 57 (181)
.+.+-|+++|-.|+||||-+.+|...- |+ + .....+..... +.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 357899999999999999998885310 10 0 00011111111 10
Q ss_pred --EcCEEEEEEEcCCCCCcccc-----------cc-ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEE
Q 030187 58 --YKNISFTVWDVGGQDKIRPL-----------WR-HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123 (181)
Q Consensus 58 --~~~~~~~i~D~~G~~~~~~~-----------~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiv 123 (181)
-.++.+.++||+|...-... .. ....-++-++++.|++-.+.--+....+.+.... --+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence 14678999999996543221 11 1112245588888998664444444556665543 357
Q ss_pred EEeCCCCCCCC-CHhHHHhhhCCC
Q 030187 124 FANKQDLPNAM-NAAEITDKLGLH 146 (181)
Q Consensus 124 v~nK~D~~~~~-~~~~~~~~~~~~ 146 (181)
++||.|....- ..-.+.++++++
T Consensus 290 IlTKlDgtAKGG~il~I~~~l~~P 313 (340)
T COG0552 290 ILTKLDGTAKGGIILSIAYELGIP 313 (340)
T ss_pred EEEecccCCCcceeeeHHHHhCCC
Confidence 78999965432 334566666654
No 440
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.46 E-value=7.5e-05 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 441
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.45 E-value=9.6e-05 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=-++|+||+|||||||+|-+.+-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999988653
No 442
>PRK14530 adenylate kinase; Provisional
Probab=97.45 E-value=0.00013 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998853
No 443
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.44 E-value=9.6e-05 Score=53.24 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=24.8
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+..-...++++|+|++|||||+|+-.+...
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 344567799999999999999998888654
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.43 E-value=0.00015 Score=40.75 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.9
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
..++.|+.|+||||++..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998774
No 445
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.40 E-value=0.00015 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999888764
No 446
>PRK06217 hypothetical protein; Validated
Probab=97.38 E-value=0.00015 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|.+||||||+...|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999753
No 447
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.002 Score=50.45 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=82.8
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhc----CCcc---------------------ccc----C-ccceeEEE-
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL----GEIV---------------------TTI----P-TIGFNVET- 55 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~----~~~~---------------------~~~----~-t~~~~~~~- 55 (181)
-+......+++|-|.++|-.|+||||-+..+.. +.+. ... + .+.+-...
T Consensus 368 dI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGY 447 (587)
T KOG0781|consen 368 DIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGY 447 (587)
T ss_pred HHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhc
Confidence 334445567899999999999999998887742 1110 000 0 00000000
Q ss_pred --------------EEEcCEEEEEEEcCCCCCcccccc------ccccCccEEEEEEECC-CcccHHHHHHHHHHHhcCC
Q 030187 56 --------------VEYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSN-DRDRVVEARDELHRMLNED 114 (181)
Q Consensus 56 --------------~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~ 114 (181)
-...++.+.++||+|...-..... .-....|.+++|-.+- .-++.+.+.. +.+.+...
T Consensus 448 gkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~-fn~al~~~ 526 (587)
T KOG0781|consen 448 GKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKK-FNRALADH 526 (587)
T ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHH-HHHHHhcC
Confidence 011357899999999764433211 1235689999998753 3455555554 44444443
Q ss_pred CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 115 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 115 ~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
..+...=-++++|+|-.+. .+-.......+...++-|+-
T Consensus 527 ~~~r~id~~~ltk~dtv~d----~vg~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 527 STPRLIDGILLTKFDTVDD----KVGAAVSMVYITGKPILFVG 565 (587)
T ss_pred CCccccceEEEEeccchhh----HHHHHhhheeecCCceEEEe
Confidence 3344445678899997653 33444444444444444543
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.36 E-value=0.00016 Score=47.77 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00016 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-+.++|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988653
No 450
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.35 E-value=0.00083 Score=44.46 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEcCCCCChHHHHhhhhcCCc--------ccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 22 MVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 22 v~G~~~~GKssli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.-|.+|+||||+.-.+...-. .+..+..+ . -.+.+.++|+|+... ......+..+|.++++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~----~---~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA----N---LDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC----C---CCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcC
Confidence 446789999999766642210 01111000 0 016789999997543 223456788999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
.+ ..++......+..+.... ...++.++.|+.+..
T Consensus 76 ~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 76 PE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred CC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 86 444444343333332221 345678999999743
No 451
>PRK08233 hypothetical protein; Provisional
Probab=97.35 E-value=0.00019 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-|+|.|++||||||+.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999753
No 452
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.34 E-value=0.0011 Score=49.17 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
+..++......+-.+++++|++|-|||+++++|....
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 4455665555666899999999999999999998644
No 453
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.34 E-value=0.00016 Score=49.92 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998654
No 454
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.34 E-value=0.00019 Score=50.90 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++...|+|.|++|||||||.+.|...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999988653
No 455
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.33 E-value=0.00019 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.00019 Score=46.46 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999654
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.00022 Score=46.41 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~ 42 (181)
.-.++++|++|+||||++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35789999999999999999976543
No 458
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.33 E-value=0.0002 Score=46.56 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988754
No 459
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.33 E-value=0.00024 Score=52.80 Aligned_cols=31 Identities=29% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhh
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
|+.....+..+-|+|.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3333334567899999999999999997664
No 460
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0013 Score=47.31 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=65.7
Q ss_pred cceEEEEcCCCC--ChHHHHhhhhcCCccccc---CccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 17 EMRILMVGLDAA--GKTTILYKLKLGEIVTTI---PTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 17 ~~~i~v~G~~~~--GKssli~~l~~~~~~~~~---~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...++|+|.+|+ ||-+++++|....+.... ....+.-++++. .++++-+.-. .++.+....+ ......+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishi-cde~~lpn~~-~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHI-CDEKFLPNAE-IAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecc-cchhccCCcc-cccceee
Confidence 356889999998 999999999877764221 222233333322 3333333211 1223332222 2244678
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
+++|||++....+..+..|+-..--+ .--..+.++||.|...
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvp 123 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVP 123 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccc---cchhheeccccccccc
Confidence 99999999888888888876322111 1123567789999753
No 461
>PRK03839 putative kinase; Provisional
Probab=97.32 E-value=0.0002 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+++|+|||||||+...|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 462
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.32 E-value=0.0052 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-+++.||+|+||||.+..|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5667899999999999888653
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.31 E-value=0.0002 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...-|+++|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4557799999999999999999864
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.29 E-value=0.00042 Score=45.47 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=26.3
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.+.........-.+++.|++|+|||++++.+...-
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444456689999999999999999997653
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.28 E-value=0.00025 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.7
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~ 38 (181)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999997
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.27 E-value=0.00021 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|++.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
No 467
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.26 E-value=0.00024 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=.++|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3789999999999999998865
No 468
>PRK13949 shikimate kinase; Provisional
Probab=97.26 E-value=0.00024 Score=48.70 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 469
>PRK14531 adenylate kinase; Provisional
Probab=97.26 E-value=0.00027 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+|+++|+|||||||+...|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 470
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.25 E-value=0.00024 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.|+++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
No 471
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.23 E-value=0.00026 Score=48.02 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.++|.+|+|||||+.++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 472
>PHA00729 NTP-binding motif containing protein
Probab=97.22 E-value=0.00057 Score=48.81 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=25.1
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.........-.+|++.|+||+|||+|...+...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444445579999999999999999888653
No 473
>PRK14532 adenylate kinase; Provisional
Probab=97.21 E-value=0.0003 Score=48.97 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 474
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.20 E-value=0.00028 Score=48.80 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+++|+|||||||+...|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
No 475
>PRK01889 GTPase RsgA; Reviewed
Probab=97.20 E-value=0.00088 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 489999999999999999998654
No 476
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.19 E-value=0.00084 Score=46.14 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=32.5
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|+.++.+- ....+.+. +.. .+.|+++|+||+|+.+......+.+.+
T Consensus 1 DvVl~VvDar~p~~~--~~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGC--RCPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCC--CCHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 789999999765221 11222233 222 368999999999997654444444433
No 477
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.19 E-value=0.00026 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=17.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....-.++|.|++|+|||+|++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444567899999999999999998854
No 478
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.19 E-value=0.00028 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+|+|+|+|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 479
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.18 E-value=0.00037 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+..-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4466889999999999999999753
No 480
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.18 E-value=0.00038 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+|+++|+|||||||+...|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999854
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.18 E-value=0.00034 Score=44.01 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999875
No 482
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00031 Score=46.49 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...+|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 6678999999999999999999974
No 483
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.18 E-value=0.0007 Score=47.11 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++..... ..-.++++|++|+||||+++.+.+.
T Consensus 16 ~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 16 AYLWLAVE-ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34443333 3568999999999999999988764
No 484
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.17 E-value=0.0083 Score=41.09 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
.+.++|+|+..... ....+..+|.++++++++ ..++......+..+ ... ......+++|+.|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~-~~~--~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVKGLL-EAL--GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHH-HHc--CCceEEEEEeCCccccc
Confidence 69999999865432 334567899999999876 34455444433332 221 23457788999986543
No 485
>PLN02674 adenylate kinase
Probab=97.17 E-value=0.00042 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...+|+++|+|||||+|+..+|..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4458899999999999999999965
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00041 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+..-.|+++|++|||||||++.+.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999999764
No 487
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.17 E-value=0.00039 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|+++|++|+|||+++..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 488
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.17 E-value=0.00029 Score=50.45 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|++.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999998864
No 489
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.15 E-value=0.00036 Score=46.29 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.|+|+|+.|+|||||+..|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 490
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.15 E-value=0.00033 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 491
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00035 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999876
No 492
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.00034 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++||+||||||+++-+.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998763
No 493
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.13 E-value=0.00036 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
|+|+|++||||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987654
No 494
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.13 E-value=0.00037 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=-++++||.|||||||++.+.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999975
No 495
>PRK05439 pantothenate kinase; Provisional
Probab=97.13 E-value=0.00052 Score=51.45 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
|+.+...+..+-|+|.|++||||||+.+.|..
T Consensus 77 fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444556778999999999999999988864
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00039 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-|+++||+|+|||||+++|...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999764
No 497
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.12 E-value=0.0004 Score=47.95 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=22.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..=.++++|+.|+|||||++.+.+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44578999999999999999888754
No 498
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.12 E-value=0.00045 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...-+.|+|++|||||||+.++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4457899999999999999999855
No 499
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.11 E-value=0.00044 Score=47.69 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.++++|+.|+|||||++.+.+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445789999999999999998853
No 500
>PRK06547 hypothetical protein; Provisional
Probab=97.10 E-value=0.00059 Score=46.90 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.......|+|.|++||||||+.+.|...
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3566788889999999999999999754
Done!