Query 030187
Match_columns 181
No_of_seqs 120 out of 1824
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1moz_A ARL1, ADP-ribosylation 100.0 2.9E-38 1E-42 218.1 21.0 179 1-179 1-180 (183)
2 1zj6_A ADP-ribosylation factor 100.0 3.4E-38 1.2E-42 218.8 21.1 178 1-179 1-178 (187)
3 2x77_A ADP-ribosylation factor 100.0 3.5E-38 1.2E-42 219.0 20.1 180 1-180 3-185 (189)
4 2b6h_A ADP-ribosylation factor 100.0 6.7E-38 2.3E-42 218.4 18.0 175 6-180 18-192 (192)
5 1ksh_A ARF-like protein 2; sma 100.0 2.6E-37 8.7E-42 214.1 20.8 178 1-180 3-181 (186)
6 1upt_A ARL1, ADP-ribosylation 100.0 3.9E-36 1.3E-40 205.2 22.1 166 15-180 5-170 (171)
7 1fzq_A ADP-ribosylation factor 100.0 1.2E-36 4.1E-41 210.2 19.3 173 8-180 5-179 (181)
8 1r8s_A ADP-ribosylation factor 100.0 1.3E-36 4.4E-41 206.3 18.5 163 18-180 1-163 (164)
9 1m2o_B GTP-binding protein SAR 100.0 1.3E-35 4.6E-40 206.4 21.1 165 13-177 19-190 (190)
10 4dkx_A RAS-related protein RAB 100.0 1.4E-37 4.7E-42 220.1 10.1 160 14-179 10-176 (216)
11 2h17_A ADP-ribosylation factor 100.0 1.9E-35 6.4E-40 204.0 19.2 165 13-177 17-181 (181)
12 1f6b_A SAR1; gtpases, N-termin 100.0 1.8E-35 6.3E-40 207.0 19.4 165 13-177 21-197 (198)
13 1zd9_A ADP-ribosylation factor 100.0 2.1E-35 7E-40 205.0 18.5 168 13-180 18-186 (188)
14 4bas_A ADP-ribosylation factor 100.0 2E-35 7E-40 206.4 17.4 168 12-179 12-189 (199)
15 3o47_A ADP-ribosylation factor 100.0 1.5E-34 5.2E-39 216.5 19.6 168 13-180 161-328 (329)
16 2h57_A ADP-ribosylation factor 100.0 2.8E-34 9.5E-39 199.5 19.5 167 13-179 17-187 (190)
17 3lvq_E ARF-GAP with SH3 domain 100.0 1.1E-32 3.9E-37 216.8 20.9 167 14-180 319-485 (497)
18 3q72_A GTP-binding protein RAD 100.0 1.5E-33 5.1E-38 191.5 12.0 160 17-180 2-165 (166)
19 1ek0_A Protein (GTP-binding pr 100.0 5.1E-33 1.7E-37 189.3 10.2 164 16-180 2-170 (170)
20 3t5g_A GTP-binding protein RHE 100.0 1.2E-32 4.3E-37 189.6 11.9 162 14-180 3-170 (181)
21 2nzj_A GTP-binding protein REM 100.0 9.4E-33 3.2E-37 189.0 11.0 160 15-179 2-169 (175)
22 3oes_A GTPase rhebl1; small GT 100.0 7.8E-33 2.7E-37 193.9 10.5 164 12-180 19-188 (201)
23 3kkq_A RAS-related protein M-R 100.0 1.8E-32 6.2E-37 189.1 10.5 163 13-180 14-183 (183)
24 3ihw_A Centg3; RAS, centaurin, 100.0 2.1E-31 7E-36 184.4 15.8 158 13-179 16-180 (184)
25 1c1y_A RAS-related protein RAP 100.0 2.9E-32 1E-36 185.1 10.6 159 16-178 2-166 (167)
26 3t1o_A Gliding protein MGLA; G 100.0 1.1E-31 3.6E-36 187.1 13.2 162 12-180 9-193 (198)
27 1u8z_A RAS-related protein RAL 100.0 2.3E-32 7.7E-37 185.6 9.3 161 15-180 2-168 (168)
28 3q85_A GTP-binding protein REM 100.0 5E-32 1.7E-36 184.5 10.9 159 17-180 2-168 (169)
29 2fg5_A RAB-22B, RAS-related pr 100.0 7.6E-32 2.6E-36 187.6 11.9 167 7-179 13-186 (192)
30 2fu5_C RAS-related protein RAB 100.0 2.6E-32 8.7E-37 188.3 9.3 159 15-179 6-171 (183)
31 2g6b_A RAS-related protein RAB 100.0 3.6E-32 1.2E-36 186.9 9.9 161 14-180 7-175 (180)
32 1r2q_A RAS-related protein RAB 100.0 6E-32 2E-36 184.0 10.6 160 14-179 3-169 (170)
33 2fn4_A P23, RAS-related protei 100.0 5.6E-32 1.9E-36 186.0 10.5 162 13-179 5-172 (181)
34 4dsu_A GTPase KRAS, isoform 2B 100.0 2.2E-31 7.5E-36 184.3 13.5 161 15-179 2-166 (189)
35 2hxs_A RAB-26, RAS-related pro 100.0 3.9E-32 1.3E-36 186.5 9.5 162 14-180 3-174 (178)
36 1x3s_A RAS-related protein RAB 100.0 6.3E-31 2.2E-35 182.9 15.7 160 15-179 13-178 (195)
37 3bc1_A RAS-related protein RAB 100.0 3.7E-32 1.3E-36 188.9 9.4 162 13-179 7-185 (195)
38 3q3j_B RHO-related GTP-binding 100.0 2.2E-31 7.5E-36 188.4 13.5 162 12-180 22-204 (214)
39 3reg_A RHO-like small GTPase; 100.0 4.5E-31 1.5E-35 183.9 14.4 161 14-180 20-189 (194)
40 2hup_A RAS-related protein RAB 100.0 6.7E-32 2.3E-36 189.3 10.1 160 15-180 27-194 (201)
41 2gf9_A RAS-related protein RAB 100.0 1.9E-31 6.3E-36 185.1 12.1 161 14-180 19-186 (189)
42 1g16_A RAS-related protein SEC 100.0 3.2E-31 1.1E-35 180.4 13.0 160 16-180 2-166 (170)
43 2efe_B Small GTP-binding prote 100.0 2.1E-31 7.1E-36 183.3 12.1 161 13-179 8-175 (181)
44 1z08_A RAS-related protein RAB 100.0 1.1E-31 3.8E-36 182.8 10.7 159 15-179 4-169 (170)
45 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.3E-31 1.8E-35 180.7 14.0 163 14-180 4-175 (177)
46 3tw8_B RAS-related protein RAB 100.0 1.9E-31 6.4E-36 183.3 11.7 158 15-179 7-171 (181)
47 1z2a_A RAS-related protein RAB 100.0 4.1E-32 1.4E-36 184.6 8.2 159 15-180 3-168 (168)
48 2ew1_A RAS-related protein RAB 100.0 6.7E-32 2.3E-36 189.3 9.5 159 15-179 24-189 (201)
49 1z0f_A RAB14, member RAS oncog 100.0 1E-31 3.4E-36 184.4 10.1 162 13-180 11-179 (179)
50 3cbq_A GTP-binding protein REM 100.0 1.5E-31 5E-36 186.7 11.1 164 12-180 18-189 (195)
51 2p5s_A RAS and EF-hand domain 100.0 1.3E-32 4.3E-37 192.6 5.7 166 10-181 21-199 (199)
52 2atv_A RERG, RAS-like estrogen 100.0 2.6E-32 8.9E-37 190.5 7.1 166 8-179 19-191 (196)
53 2bov_A RAla, RAS-related prote 100.0 1.3E-31 4.4E-36 188.0 10.6 165 10-179 7-177 (206)
54 3tkl_A RAS-related protein RAB 100.0 2.5E-31 8.6E-36 185.1 12.0 160 15-180 14-180 (196)
55 1z0j_A RAB-22, RAS-related pro 100.0 2.6E-31 9E-36 180.9 11.8 159 15-179 4-169 (170)
56 2fh5_B SR-beta, signal recogni 100.0 1.4E-30 4.7E-35 184.0 15.8 164 14-177 4-214 (214)
57 2iwr_A Centaurin gamma 1; ANK 100.0 1.2E-30 4.2E-35 179.1 15.0 156 15-179 5-169 (178)
58 2bcg_Y Protein YP2, GTP-bindin 100.0 3.7E-31 1.3E-35 185.9 12.5 159 15-179 6-171 (206)
59 2oil_A CATX-8, RAS-related pro 100.0 2.5E-31 8.5E-36 185.0 11.4 160 15-180 23-189 (193)
60 2a5j_A RAS-related protein RAB 100.0 2.4E-31 8.3E-36 184.9 11.0 160 15-180 19-185 (191)
61 1kao_A RAP2A; GTP-binding prot 100.0 5.5E-32 1.9E-36 183.5 7.3 159 16-179 2-166 (167)
62 2bme_A RAB4A, RAS-related prot 100.0 2.4E-31 8.3E-36 183.8 10.5 159 15-179 8-173 (186)
63 1zbd_A Rabphilin-3A; G protein 100.0 3.6E-31 1.2E-35 185.5 11.6 159 15-179 6-171 (203)
64 3c5c_A RAS-like protein 12; GD 100.0 1E-31 3.5E-36 186.3 8.3 162 13-180 17-187 (187)
65 1vg8_A RAS-related protein RAB 100.0 1.5E-30 5.2E-35 182.7 14.2 162 14-179 5-175 (207)
66 2a9k_A RAS-related protein RAL 100.0 1.8E-31 6.2E-36 184.3 9.2 161 14-179 15-181 (187)
67 3dz8_A RAS-related protein RAB 100.0 3.4E-32 1.2E-36 189.2 5.5 160 15-180 21-187 (191)
68 1z06_A RAS-related protein RAB 100.0 1.8E-31 6.1E-36 185.2 9.0 164 11-179 14-188 (189)
69 2g3y_A GTP-binding protein GEM 100.0 3E-31 1E-35 187.1 10.2 160 15-179 35-203 (211)
70 2f7s_A C25KG, RAS-related prot 100.0 8E-32 2.7E-36 190.7 7.1 160 15-179 23-199 (217)
71 3clv_A RAB5 protein, putative; 100.0 3.6E-30 1.2E-34 180.1 15.4 158 15-180 5-205 (208)
72 1m7b_A RND3/RHOE small GTP-bin 100.0 7E-31 2.4E-35 181.5 11.6 157 15-180 5-184 (184)
73 2y8e_A RAB-protein 6, GH09086P 100.0 2.6E-31 9E-36 182.3 9.3 159 15-179 12-177 (179)
74 2ce2_X GTPase HRAS; signaling 100.0 2.6E-30 8.8E-35 175.0 14.0 161 16-180 2-166 (166)
75 4djt_A GTP-binding nuclear pro 100.0 6.3E-31 2.2E-35 186.2 11.3 161 14-179 8-175 (218)
76 3bwd_D RAC-like GTP-binding pr 100.0 5.7E-31 1.9E-35 181.3 10.7 160 14-179 5-181 (182)
77 2il1_A RAB12; G-protein, GDP, 100.0 4.6E-31 1.6E-35 183.7 10.1 163 14-181 23-192 (192)
78 3cpj_B GTP-binding protein YPT 100.0 8.1E-31 2.8E-35 186.5 11.6 160 15-180 11-177 (223)
79 2atx_A Small GTP binding prote 100.0 6E-30 2.1E-34 178.1 15.3 159 14-179 15-193 (194)
80 2o52_A RAS-related protein RAB 100.0 2.7E-31 9.1E-36 186.0 8.5 159 15-179 23-188 (200)
81 2erx_A GTP-binding protein DI- 100.0 2.6E-31 8.7E-36 181.2 8.2 160 16-180 2-168 (172)
82 3cph_A RAS-related protein SEC 100.0 3.8E-30 1.3E-34 181.4 14.1 162 13-179 16-182 (213)
83 1ky3_A GTP-binding protein YPT 100.0 3.5E-30 1.2E-34 177.1 13.5 162 14-179 5-178 (182)
84 2fv8_A H6, RHO-related GTP-bin 100.0 8.2E-30 2.8E-34 179.3 15.6 166 14-180 22-201 (207)
85 4gzl_A RAS-related C3 botulinu 100.0 3.8E-30 1.3E-34 180.7 13.6 165 12-177 25-203 (204)
86 3con_A GTPase NRAS; structural 100.0 5.3E-30 1.8E-34 177.8 14.2 164 11-179 15-183 (190)
87 3llu_A RAS-related GTP-binding 100.0 1.3E-30 4.5E-35 181.9 11.0 164 12-178 15-196 (196)
88 3l0i_B RAS-related protein RAB 100.0 9.4E-32 3.2E-36 188.1 5.0 157 15-180 31-197 (199)
89 2j0v_A RAC-like GTP-binding pr 100.0 1.8E-30 6E-35 183.2 11.1 156 15-179 7-180 (212)
90 2q3h_A RAS homolog gene family 100.0 8.5E-30 2.9E-34 178.3 14.3 160 13-179 16-195 (201)
91 3gj0_A GTP-binding nuclear pro 100.0 2.1E-30 7.1E-35 184.0 11.3 160 13-179 11-175 (221)
92 1gwn_A RHO-related GTP-binding 100.0 6.1E-30 2.1E-34 179.9 13.4 157 15-180 26-205 (205)
93 2gco_A H9, RHO-related GTP-bin 100.0 1.3E-29 4.4E-34 177.5 15.0 166 13-179 21-200 (201)
94 2gf0_A GTP-binding protein DI- 100.0 3.5E-30 1.2E-34 179.7 11.9 163 14-180 5-172 (199)
95 1mh1_A RAC1; GTP-binding, GTPa 100.0 7.5E-30 2.6E-34 176.1 13.0 164 15-179 3-180 (186)
96 2j1l_A RHO-related GTP-binding 100.0 8.4E-30 2.9E-34 180.2 13.4 164 15-179 32-209 (214)
97 2yc2_C IFT27, small RAB-relate 100.0 2.4E-31 8.3E-36 186.7 5.0 160 15-179 18-192 (208)
98 2cjw_A GTP-binding protein GEM 100.0 3.3E-30 1.1E-34 179.4 10.5 159 15-178 4-171 (192)
99 3r7w_B Gtpase2, GTP-binding pr 100.0 3.7E-30 1.3E-34 190.2 9.6 157 19-179 1-174 (331)
100 2zej_A Dardarin, leucine-rich 100.0 4.1E-30 1.4E-34 177.8 7.8 161 17-179 2-178 (184)
101 2lkc_A Translation initiation 100.0 3.8E-28 1.3E-32 166.5 17.6 160 13-178 4-170 (178)
102 3th5_A RAS-related C3 botulinu 99.9 6.1E-31 2.1E-35 184.6 0.0 165 12-177 25-203 (204)
103 2wji_A Ferrous iron transport 100.0 1.9E-27 6.6E-32 161.5 14.6 148 16-178 2-164 (165)
104 2qu8_A Putative nucleolar GTP- 100.0 1.2E-27 4.1E-32 170.6 13.8 163 15-179 27-205 (228)
105 3r7w_A Gtpase1, GTP-binding pr 100.0 6.7E-28 2.3E-32 179.0 11.8 162 16-178 2-180 (307)
106 2gj8_A MNME, tRNA modification 100.0 1.4E-27 4.7E-32 163.4 12.0 152 15-178 2-165 (172)
107 1svi_A GTP-binding protein YSX 99.9 5.6E-28 1.9E-32 168.1 9.5 157 12-178 18-194 (195)
108 2dyk_A GTP-binding protein; GT 99.9 1.6E-27 5.6E-32 160.8 11.1 147 18-177 2-160 (161)
109 2wkq_A NPH1-1, RAS-related C3 99.9 5.9E-27 2E-31 175.3 13.8 166 14-180 152-331 (332)
110 3c5h_A Glucocorticoid receptor 99.9 6.6E-28 2.2E-32 174.7 8.0 161 14-178 16-254 (255)
111 3pqc_A Probable GTP-binding pr 99.9 9.4E-28 3.2E-32 166.7 8.3 162 12-180 18-195 (195)
112 2wjg_A FEOB, ferrous iron tran 99.9 3E-26 1E-30 158.5 14.0 152 14-180 4-170 (188)
113 2cxx_A Probable GTP-binding pr 99.9 5.8E-28 2E-32 167.2 5.2 159 18-179 2-184 (190)
114 2f9l_A RAB11B, member RAS onco 99.9 1.3E-26 4.3E-31 162.1 10.7 159 15-179 3-168 (199)
115 3a1s_A Iron(II) transport prot 99.9 1.1E-25 3.7E-30 163.2 15.0 149 15-178 3-166 (258)
116 4dhe_A Probable GTP-binding pr 99.9 9.3E-27 3.2E-31 165.2 6.5 163 12-179 24-211 (223)
117 3iev_A GTP-binding protein ERA 99.9 2.9E-25 1E-29 164.8 14.4 160 14-179 7-182 (308)
118 1oix_A RAS-related protein RAB 99.9 8.7E-26 3E-30 156.9 10.7 157 16-177 28-190 (191)
119 1wf3_A GTP-binding protein; GT 99.9 3.9E-25 1.3E-29 163.5 14.1 155 16-179 6-173 (301)
120 3ohm_A Guanine nucleotide-bind 99.9 6.7E-25 2.3E-29 162.9 14.8 135 46-180 152-319 (327)
121 3i8s_A Ferrous iron transport 99.9 1.3E-25 4.5E-30 164.1 10.8 149 16-179 2-169 (274)
122 3iby_A Ferrous iron transport 99.9 2.4E-25 8.2E-30 161.2 12.0 144 18-176 2-164 (256)
123 1cip_A Protein (guanine nucleo 99.9 2.4E-25 8.4E-30 167.4 11.8 133 47-179 179-344 (353)
124 3b1v_A Ferrous iron uptake tra 99.9 3E-25 1E-29 161.8 11.1 147 16-178 2-163 (272)
125 3k53_A Ferrous iron transport 99.9 2.3E-24 8E-29 157.4 15.2 150 16-179 2-166 (271)
126 1zcb_A G alpha I/13; GTP-bindi 99.9 1.7E-24 5.8E-29 163.3 14.1 132 48-179 188-353 (362)
127 2hjg_A GTP-binding protein ENG 99.9 2.6E-25 8.7E-30 172.3 9.6 158 16-178 174-348 (436)
128 3dpu_A RAB family protein; roc 99.9 1.1E-25 3.7E-30 178.5 7.5 156 14-179 38-208 (535)
129 3gee_A MNME, tRNA modification 99.9 3E-24 1E-28 167.2 14.9 153 15-178 231-397 (476)
130 1nrj_B SR-beta, signal recogni 99.9 2.1E-26 7.2E-31 162.9 1.6 118 13-135 8-137 (218)
131 4fid_A G protein alpha subunit 99.9 1.4E-24 4.7E-29 161.8 10.3 134 46-179 146-328 (340)
132 3sjy_A Translation initiation 99.9 1.7E-24 5.7E-29 166.2 10.8 163 13-178 4-191 (403)
133 2e87_A Hypothetical protein PH 99.9 1.9E-23 6.5E-28 158.1 15.4 157 15-178 165-335 (357)
134 1xzp_A Probable tRNA modificat 99.9 5.9E-24 2E-28 165.7 11.7 150 16-178 242-404 (482)
135 2xtz_A Guanine nucleotide-bind 99.9 1.7E-24 5.7E-29 162.8 8.2 121 59-179 181-345 (354)
136 3qq5_A Small GTP-binding prote 99.9 1.2E-24 4.1E-29 167.0 7.4 154 13-178 30-195 (423)
137 1mky_A Probable GTP-binding pr 99.9 8.1E-24 2.8E-28 164.1 11.9 150 18-178 2-165 (439)
138 2hjg_A GTP-binding protein ENG 99.9 2.6E-24 8.9E-29 166.7 9.0 149 17-178 3-164 (436)
139 1lnz_A SPO0B-associated GTP-bi 99.9 5.3E-24 1.8E-28 159.6 10.0 156 18-179 159-330 (342)
140 4dcu_A GTP-binding protein ENG 99.9 1.8E-24 6.3E-29 168.4 7.8 159 15-178 193-368 (456)
141 3tr5_A RF-3, peptide chain rel 99.9 7.3E-23 2.5E-27 161.2 15.1 115 15-134 11-150 (528)
142 3geh_A MNME, tRNA modification 99.9 1.4E-23 4.7E-28 163.0 10.0 151 15-179 222-384 (462)
143 1azs_C GS-alpha; complex (lyas 99.9 1.3E-23 4.3E-28 159.8 9.0 132 48-179 204-385 (402)
144 3izy_P Translation initiation 99.9 3.7E-24 1.3E-28 168.2 6.1 157 16-177 3-166 (537)
145 1s0u_A EIF-2-gamma, translatio 99.9 1.1E-22 3.8E-27 156.4 13.9 161 13-178 4-197 (408)
146 4dcu_A GTP-binding protein ENG 99.9 4.1E-24 1.4E-28 166.4 6.0 158 9-178 15-184 (456)
147 2ged_A SR-beta, signal recogni 99.9 1.1E-23 3.8E-28 146.1 7.1 125 14-143 45-181 (193)
148 1ega_A Protein (GTP-binding pr 99.9 2.8E-22 9.7E-27 148.3 14.9 153 16-178 7-174 (301)
149 1wb1_A Translation elongation 99.9 2.5E-23 8.5E-28 162.7 8.9 159 15-178 17-188 (482)
150 3j2k_7 ERF3, eukaryotic polype 99.9 1.9E-23 6.6E-28 161.7 8.1 155 13-171 13-217 (439)
151 1mky_A Probable GTP-binding pr 99.9 1.3E-22 4.4E-27 157.3 12.4 158 16-178 179-354 (439)
152 2elf_A Protein translation elo 99.9 8.8E-23 3E-27 154.7 11.2 146 19-178 23-179 (370)
153 1g7s_A Translation initiation 99.9 2.2E-22 7.5E-27 160.3 13.4 156 15-178 3-217 (594)
154 2xtp_A GTPase IMAP family memb 99.9 2.4E-22 8.2E-27 145.8 12.5 161 13-179 18-208 (260)
155 1zun_B Sulfate adenylate trans 99.9 9.3E-23 3.2E-27 157.9 10.9 159 7-169 14-214 (434)
156 3cb4_D GTP-binding protein LEP 99.9 3.1E-22 1.1E-26 159.4 13.9 154 16-179 3-182 (599)
157 1jny_A EF-1-alpha, elongation 99.9 1.7E-23 5.9E-28 162.0 6.1 154 15-169 4-203 (435)
158 3p26_A Elongation factor 1 alp 99.9 1.4E-23 4.9E-28 164.4 5.4 153 14-168 30-227 (483)
159 1kk1_A EIF2gamma; initiation o 99.9 1.2E-22 4.2E-27 156.2 10.4 161 13-178 6-199 (410)
160 2ywe_A GTP-binding protein LEP 99.9 6.4E-22 2.2E-26 157.4 14.7 155 15-179 4-184 (600)
161 1d2e_A Elongation factor TU (E 99.9 6.1E-23 2.1E-27 157.3 8.0 158 16-178 2-194 (397)
162 2c78_A Elongation factor TU-A; 99.9 1.7E-22 5.9E-27 155.2 10.0 160 14-178 8-211 (405)
163 2qtf_A Protein HFLX, GTP-bindi 99.9 5.5E-22 1.9E-26 149.9 12.5 154 17-178 178-353 (364)
164 1zo1_I IF2, translation initia 99.9 3.3E-23 1.1E-27 161.7 6.0 156 15-176 2-164 (501)
165 3izq_1 HBS1P, elongation facto 99.9 5.3E-23 1.8E-27 164.6 6.9 153 15-169 165-362 (611)
166 3lxw_A GTPase IMAP family memb 99.9 6.4E-22 2.2E-26 142.6 10.7 166 12-179 16-208 (247)
167 1r5b_A Eukaryotic peptide chai 99.9 6.8E-23 2.3E-27 159.8 2.7 156 11-170 37-243 (467)
168 3mca_A HBS1, elongation factor 99.9 1.9E-23 6.6E-28 166.7 -0.8 161 14-177 174-395 (592)
169 3t5d_A Septin-7; GTP-binding p 99.9 4E-22 1.4E-26 145.8 6.2 158 15-178 6-203 (274)
170 2qag_A Septin-2, protein NEDD5 99.9 2.3E-22 7.9E-27 152.1 4.7 161 13-180 33-234 (361)
171 2h5e_A Peptide chain release f 99.9 1.6E-20 5.4E-25 148.1 14.4 115 15-134 11-150 (529)
172 2aka_B Dynamin-1; fusion prote 99.8 5.5E-21 1.9E-25 141.2 10.9 156 15-175 24-249 (299)
173 1f60_A Elongation factor EEF1A 99.8 2.6E-21 8.7E-26 150.6 9.3 151 15-169 5-202 (458)
174 3lxx_A GTPase IMAP family memb 99.8 1.1E-21 3.6E-26 140.8 6.5 166 11-178 23-213 (239)
175 3avx_A Elongation factor TS, e 99.8 5.9E-21 2E-25 159.2 9.8 159 15-178 294-485 (1289)
176 1dar_A EF-G, elongation factor 99.8 5.7E-20 1.9E-24 149.2 15.4 115 15-134 10-145 (691)
177 3def_A T7I23.11 protein; chlor 99.8 6.7E-20 2.3E-24 133.1 12.2 117 15-132 34-165 (262)
178 2dy1_A Elongation factor G; tr 99.8 2.6E-19 9E-24 144.8 14.7 113 14-131 6-139 (665)
179 2xex_A Elongation factor G; GT 99.8 3.5E-19 1.2E-23 144.6 14.6 116 14-134 7-143 (693)
180 1pui_A ENGB, probable GTP-bind 99.8 1.3E-19 4.4E-24 127.2 9.9 158 12-178 21-198 (210)
181 2rdo_7 EF-G, elongation factor 99.8 1.1E-18 3.7E-23 141.9 16.0 115 14-133 7-149 (704)
182 1jwy_B Dynamin A GTPase domain 99.8 3.5E-19 1.2E-23 132.5 10.6 115 60-178 130-261 (315)
183 2j69_A Bacterial dynamin-like 99.8 1.2E-19 4E-24 147.4 8.4 161 14-178 66-324 (695)
184 1h65_A Chloroplast outer envel 99.8 1.8E-18 6.3E-23 126.1 12.4 117 16-133 38-169 (270)
185 1udx_A The GTP-binding protein 99.8 2.5E-18 8.6E-23 131.7 11.8 156 18-179 158-325 (416)
186 3t34_A Dynamin-related protein 99.8 6E-19 2.1E-23 133.6 5.7 149 16-171 33-253 (360)
187 2qnr_A Septin-2, protein NEDD5 99.8 3.6E-19 1.2E-23 131.6 4.0 161 13-180 14-215 (301)
188 3vqt_A RF-3, peptide chain rel 99.7 3.8E-17 1.3E-21 129.4 14.6 114 16-134 30-168 (548)
189 2x2e_A Dynamin-1; nitration, h 99.7 4.3E-18 1.5E-22 128.6 7.8 155 16-175 30-254 (353)
190 1u0l_A Probable GTPase ENGC; p 99.7 7.3E-18 2.5E-22 124.7 7.6 131 32-175 32-169 (301)
191 3l82_B F-box only protein 4; T 99.7 1.8E-17 6.3E-22 114.3 8.7 171 8-180 7-224 (227)
192 2qag_C Septin-7; cell cycle, c 99.7 1.2E-17 4.2E-22 128.0 7.3 159 14-177 28-225 (418)
193 3p32_A Probable GTPase RV1496/ 99.7 8.7E-18 3E-22 126.9 6.4 153 14-178 76-283 (355)
194 1wxq_A GTP-binding protein; st 99.7 5E-18 1.7E-22 129.7 4.4 80 18-97 1-114 (397)
195 2wsm_A Hydrogenase expression/ 99.7 4.9E-17 1.7E-21 114.9 8.9 153 12-179 25-214 (221)
196 1n0u_A EF-2, elongation factor 99.7 6.3E-17 2.2E-21 133.8 9.4 112 15-131 17-163 (842)
197 2qpt_A EH domain-containing pr 99.7 5.2E-17 1.8E-21 128.8 7.0 121 15-139 63-239 (550)
198 2www_A Methylmalonic aciduria 99.7 1.9E-16 6.7E-21 119.2 9.8 150 16-177 73-277 (349)
199 3j25_A Tetracycline resistance 99.6 9.5E-17 3.2E-21 129.4 5.6 156 18-178 3-238 (638)
200 3l2o_B F-box only protein 4; s 99.6 4.9E-16 1.7E-20 112.2 6.9 111 68-180 194-309 (312)
201 1jal_A YCHF protein; nucleotid 99.6 1.4E-14 4.7E-19 109.0 14.0 79 18-96 3-108 (363)
202 1yrb_A ATP(GTP)binding protein 99.6 6.2E-16 2.1E-20 112.0 5.8 117 61-178 109-256 (262)
203 4fn5_A EF-G 1, elongation fact 99.6 2.5E-14 8.6E-19 116.7 15.4 113 16-133 12-152 (709)
204 2p67_A LAO/AO transport system 99.6 1.1E-15 3.9E-20 114.7 7.0 153 14-178 53-260 (341)
205 3zvr_A Dynamin-1; hydrolase, D 99.6 1.1E-14 3.8E-19 118.3 11.3 155 16-175 50-274 (772)
206 2hf9_A Probable hydrogenase ni 99.6 1.2E-14 4E-19 103.0 9.3 152 13-179 34-224 (226)
207 4a9a_A Ribosome-interacting GT 99.5 7.4E-14 2.5E-18 105.5 12.5 111 18-130 73-194 (376)
208 2dby_A GTP-binding protein; GD 99.5 8E-14 2.8E-18 105.3 9.6 79 18-96 2-111 (368)
209 2qm8_A GTPase/ATPase; G protei 99.5 8.4E-14 2.9E-18 104.3 7.9 151 15-177 53-259 (337)
210 2yv5_A YJEQ protein; hydrolase 99.4 6.1E-13 2.1E-17 98.3 7.3 96 71-175 66-165 (302)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 2.6E-12 8.8E-17 97.6 6.7 85 15-99 20-131 (396)
212 2j37_W Signal recognition part 99.1 6.7E-10 2.3E-14 87.0 10.6 154 15-176 99-310 (504)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 8.1E-10 2.8E-14 84.0 8.7 81 16-96 19-127 (392)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 4.4E-10 1.5E-14 85.2 4.8 112 17-134 162-290 (369)
215 3sop_A Neuronal-specific septi 98.9 1.7E-09 6E-14 78.5 7.0 112 17-133 2-155 (270)
216 3h2y_A GTPase family protein; 98.9 2.5E-10 8.7E-15 86.4 2.4 100 70-177 55-158 (368)
217 3h2y_A GTPase family protein; 98.9 1.2E-09 4.1E-14 82.7 4.9 116 16-137 159-292 (368)
218 3ec1_A YQEH GTPase; atnos1, at 98.9 5.2E-10 1.8E-14 84.8 2.4 100 70-178 57-161 (369)
219 2qag_B Septin-6, protein NEDD5 98.9 1.1E-08 3.7E-13 78.5 8.9 113 16-134 41-192 (427)
220 1tq4_A IIGP1, interferon-induc 98.8 1.4E-08 4.7E-13 77.8 8.5 155 16-178 68-252 (413)
221 1puj_A YLQF, conserved hypothe 98.8 4.9E-09 1.7E-13 76.6 3.9 102 65-178 3-105 (282)
222 3cnl_A YLQF, putative uncharac 98.7 3.9E-09 1.3E-13 76.3 2.8 55 18-73 100-156 (262)
223 1puj_A YLQF, conserved hypothe 98.7 1.6E-08 5.5E-13 73.9 4.1 58 14-72 117-176 (282)
224 2v3c_C SRP54, signal recogniti 98.6 8.6E-09 2.9E-13 79.5 1.4 108 17-132 99-252 (432)
225 1f5n_A Interferon-induced guan 98.4 3.6E-07 1.2E-11 72.9 5.9 60 14-73 35-103 (592)
226 3dm5_A SRP54, signal recogniti 98.4 3.8E-07 1.3E-11 70.3 5.7 111 16-133 99-254 (443)
227 3szr_A Interferon-induced GTP- 98.3 1.3E-06 4.4E-11 70.3 6.1 24 18-41 46-69 (608)
228 1t9h_A YLOQ, probable GTPase E 98.2 5.6E-07 1.9E-11 66.3 2.8 89 76-172 78-170 (307)
229 3cnl_A YLQF, putative uncharac 98.1 2.7E-07 9.1E-12 66.7 -0.2 93 68-175 4-97 (262)
230 3kl4_A SRP54, signal recogniti 98.1 8.8E-06 3E-10 62.7 8.1 109 17-132 97-252 (433)
231 1j8m_F SRP54, signal recogniti 98.1 2.3E-06 8E-11 62.8 4.1 108 17-132 98-253 (297)
232 1bif_A 6-phosphofructo-2-kinas 98.1 1.8E-07 6.3E-12 73.0 -2.6 93 14-107 36-142 (469)
233 2xxa_A Signal recognition part 97.9 1.4E-05 4.8E-10 61.7 5.7 121 16-144 99-267 (433)
234 3e70_C DPA, signal recognition 97.8 1.7E-05 5.7E-10 59.1 4.2 25 15-39 127-151 (328)
235 2rcn_A Probable GTPase ENGC; Y 97.8 8E-05 2.7E-09 56.0 7.5 84 81-173 127-213 (358)
236 3q5d_A Atlastin-1; G protein, 97.7 4.8E-05 1.6E-09 58.8 5.7 26 14-39 64-89 (447)
237 1np6_A Molybdopterin-guanine d 97.7 0.00018 6.2E-09 48.6 7.7 23 18-40 7-29 (174)
238 1ye8_A Protein THEP1, hypothet 97.7 2.5E-05 8.6E-10 53.0 2.9 22 19-40 2-23 (178)
239 2ffh_A Protein (FFH); SRP54, s 97.6 4.9E-05 1.7E-09 58.5 4.5 67 59-132 179-251 (425)
240 1kgd_A CASK, peripheral plasma 97.6 2.7E-05 9.1E-10 52.8 2.7 23 18-40 6-28 (180)
241 2bbw_A Adenylate kinase 4, AK4 97.6 3.6E-05 1.2E-09 54.8 3.4 32 7-38 17-48 (246)
242 1lvg_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 53.2 2.7 22 18-39 5-26 (198)
243 1zp6_A Hypothetical protein AT 97.5 4.9E-05 1.7E-09 51.8 2.8 24 17-40 9-32 (191)
244 3tr0_A Guanylate kinase, GMP k 97.5 5.2E-05 1.8E-09 52.2 2.7 24 17-40 7-30 (205)
245 3a00_A Guanylate kinase, GMP k 97.5 5.4E-05 1.8E-09 51.6 2.7 22 19-40 3-24 (186)
246 3ney_A 55 kDa erythrocyte memb 97.5 8.1E-05 2.8E-09 51.3 3.4 29 12-40 14-42 (197)
247 3c8u_A Fructokinase; YP_612366 97.5 6.7E-05 2.3E-09 52.0 3.0 25 15-39 20-44 (208)
248 4gp7_A Metallophosphoesterase; 97.4 6.1E-05 2.1E-09 50.6 2.6 22 18-39 10-31 (171)
249 1znw_A Guanylate kinase, GMP k 97.4 6.6E-05 2.3E-09 52.0 2.7 24 17-40 20-43 (207)
250 3ec2_A DNA replication protein 97.4 8.6E-05 2.9E-09 50.2 3.2 31 10-40 31-61 (180)
251 1s96_A Guanylate kinase, GMP k 97.4 7E-05 2.4E-09 52.5 2.7 24 17-40 16-39 (219)
252 1z6g_A Guanylate kinase; struc 97.4 7.3E-05 2.5E-09 52.3 2.7 24 17-40 23-46 (218)
253 3tau_A Guanylate kinase, GMP k 97.4 9.8E-05 3.4E-09 51.2 3.4 26 15-40 6-31 (208)
254 1ex7_A Guanylate kinase; subst 97.4 8.2E-05 2.8E-09 50.8 2.9 20 20-39 4-23 (186)
255 2qor_A Guanylate kinase; phosp 97.3 0.00011 3.8E-09 50.7 2.8 23 17-39 12-34 (204)
256 3tif_A Uncharacterized ABC tra 97.3 0.00011 3.9E-09 52.0 2.9 23 18-40 32-54 (235)
257 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.9E-09 50.0 3.3 26 16-41 5-30 (207)
258 3asz_A Uridine kinase; cytidin 97.3 0.00012 4.2E-09 50.6 3.0 25 15-39 4-28 (211)
259 1kag_A SKI, shikimate kinase I 97.3 0.00011 3.9E-09 49.1 2.7 22 18-39 5-26 (173)
260 1jbk_A CLPB protein; beta barr 97.3 0.00028 9.5E-09 47.5 4.7 35 6-40 32-66 (195)
261 3lw7_A Adenylate kinase relate 97.3 0.00014 4.8E-09 48.5 3.1 20 18-37 2-21 (179)
262 1ly1_A Polynucleotide kinase; 97.3 0.00013 4.3E-09 49.1 2.9 22 18-39 3-24 (181)
263 2bdt_A BH3686; alpha-beta prot 97.3 0.00012 4E-09 49.8 2.7 21 19-39 4-24 (189)
264 2rcn_A Probable GTPase ENGC; Y 97.3 0.00014 4.9E-09 54.6 3.1 26 17-42 215-240 (358)
265 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5.1E-09 48.3 3.0 21 19-39 3-23 (173)
266 4dzz_A Plasmid partitioning pr 97.3 0.0014 4.9E-08 44.8 8.0 69 60-132 75-144 (206)
267 3end_A Light-independent proto 97.3 0.0065 2.2E-07 44.5 11.9 83 60-146 156-239 (307)
268 3t61_A Gluconokinase; PSI-biol 97.3 0.00017 5.7E-09 49.7 3.1 25 15-39 16-40 (202)
269 1aky_A Adenylate kinase; ATP:A 97.3 0.00019 6.3E-09 50.1 3.4 25 15-39 2-26 (220)
270 2pcj_A ABC transporter, lipopr 97.3 0.00015 5.1E-09 51.0 2.8 23 19-41 32-54 (224)
271 2cdn_A Adenylate kinase; phosp 97.3 0.00021 7.1E-09 49.1 3.5 27 13-39 16-42 (201)
272 3tqc_A Pantothenate kinase; bi 97.2 0.00018 6E-09 53.4 3.2 25 14-38 89-113 (321)
273 1kht_A Adenylate kinase; phosp 97.2 0.0002 6.8E-09 48.6 3.3 23 17-39 3-25 (192)
274 4eun_A Thermoresistant glucoki 97.2 0.0002 6.8E-09 49.3 3.2 24 16-39 28-51 (200)
275 1htw_A HI0065; nucleotide-bind 97.2 0.00017 5.8E-09 47.9 2.7 26 16-41 32-57 (158)
276 1knq_A Gluconate kinase; ALFA/ 97.2 0.0002 6.9E-09 48.0 3.1 23 17-39 8-30 (175)
277 2onk_A Molybdate/tungstate ABC 97.2 0.00018 6.1E-09 51.2 2.9 23 18-40 25-47 (240)
278 2i3b_A HCR-ntpase, human cance 97.2 0.00016 5.5E-09 49.5 2.6 22 19-40 3-24 (189)
279 3gfo_A Cobalt import ATP-bindi 97.2 0.00018 6.2E-09 52.2 2.9 23 18-40 35-57 (275)
280 1b0u_A Histidine permease; ABC 97.2 0.00019 6.5E-09 51.7 2.9 23 18-40 33-55 (262)
281 1sgw_A Putative ABC transporte 97.2 0.0002 6.8E-09 50.0 2.9 23 19-41 37-59 (214)
282 2cbz_A Multidrug resistance-as 97.2 0.00022 7.6E-09 50.6 3.1 24 18-41 32-55 (237)
283 1y63_A LMAJ004144AAA protein; 97.2 0.00028 9.5E-09 47.9 3.5 26 15-40 8-33 (184)
284 4g1u_C Hemin import ATP-bindin 97.2 0.0002 6.9E-09 51.7 2.9 23 18-40 38-60 (266)
285 1g6h_A High-affinity branched- 97.2 0.00021 7.1E-09 51.3 2.9 23 18-40 34-56 (257)
286 1cke_A CK, MSSA, protein (cyti 97.2 0.00026 8.8E-09 49.5 3.3 23 17-39 5-27 (227)
287 1tue_A Replication protein E1; 97.2 0.00022 7.4E-09 49.4 2.8 22 18-39 59-80 (212)
288 2rhm_A Putative kinase; P-loop 97.2 0.00025 8.5E-09 48.2 3.2 23 17-39 5-27 (193)
289 2p65_A Hypothetical protein PF 97.2 0.00036 1.2E-08 46.8 4.0 35 6-40 32-66 (187)
290 3fb4_A Adenylate kinase; psych 97.2 0.00024 8.2E-09 49.3 3.1 20 19-38 2-21 (216)
291 3uie_A Adenylyl-sulfate kinase 97.2 0.00029 9.8E-09 48.5 3.5 27 14-40 22-48 (200)
292 2ff7_A Alpha-hemolysin translo 97.2 0.00024 8.1E-09 50.7 3.1 23 18-40 36-58 (247)
293 3cm0_A Adenylate kinase; ATP-b 97.2 0.00023 7.8E-09 48.2 2.9 23 17-39 4-26 (186)
294 1mv5_A LMRA, multidrug resista 97.2 0.00024 8.1E-09 50.6 3.1 23 18-40 29-51 (243)
295 1qhx_A CPT, protein (chloramph 97.2 0.00029 1E-08 47.3 3.4 22 18-39 4-25 (178)
296 1tev_A UMP-CMP kinase; ploop, 97.2 0.00024 8.3E-09 48.3 3.0 23 17-39 3-25 (196)
297 1nks_A Adenylate kinase; therm 97.2 0.00024 8.2E-09 48.2 3.0 21 19-39 3-23 (194)
298 2eyu_A Twitching motility prot 97.2 0.0002 6.9E-09 51.5 2.7 26 14-39 22-47 (261)
299 2v9p_A Replication protein E1; 97.2 0.00022 7.4E-09 52.5 2.9 24 16-39 125-148 (305)
300 3tlx_A Adenylate kinase 2; str 97.2 0.0003 1E-08 50.0 3.6 25 15-39 27-51 (243)
301 3trf_A Shikimate kinase, SK; a 97.2 0.00028 9.6E-09 47.7 3.3 23 17-39 5-27 (185)
302 3vaa_A Shikimate kinase, SK; s 97.1 0.00023 8E-09 48.9 2.9 23 17-39 25-47 (199)
303 3sr0_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 49.1 3.1 21 19-39 2-22 (206)
304 2if2_A Dephospho-COA kinase; a 97.1 0.00024 8.3E-09 48.9 3.0 22 18-39 2-23 (204)
305 1t9h_A YLOQ, probable GTPase E 97.1 7.7E-05 2.6E-09 55.0 0.4 25 17-41 173-197 (307)
306 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 49.2 3.1 21 19-39 2-22 (216)
307 1ji0_A ABC transporter; ATP bi 97.1 0.00024 8.1E-09 50.5 2.9 23 18-40 33-55 (240)
308 2pze_A Cystic fibrosis transme 97.1 0.00026 8.9E-09 49.9 3.1 23 19-41 36-58 (229)
309 2olj_A Amino acid ABC transpor 97.1 0.00024 8.1E-09 51.2 2.9 23 18-40 51-73 (263)
310 2plr_A DTMP kinase, probable t 97.1 0.0003 1E-08 48.5 3.3 24 16-39 3-26 (213)
311 2qi9_C Vitamin B12 import ATP- 97.1 0.00025 8.4E-09 50.7 2.9 24 18-41 27-50 (249)
312 1vpl_A ABC transporter, ATP-bi 97.1 0.00025 8.5E-09 50.9 2.9 23 18-40 42-64 (256)
313 4a74_A DNA repair and recombin 97.1 0.00023 7.9E-09 49.7 2.7 22 18-39 26-47 (231)
314 1jjv_A Dephospho-COA kinase; P 97.1 0.00027 9.3E-09 48.7 3.0 22 18-39 3-24 (206)
315 1rz3_A Hypothetical protein rb 97.1 0.00055 1.9E-08 47.1 4.5 25 15-39 20-44 (201)
316 3b85_A Phosphate starvation-in 97.1 0.00022 7.5E-09 49.6 2.4 23 18-40 23-45 (208)
317 1u0l_A Probable GTPase ENGC; p 97.1 0.00024 8.3E-09 52.2 2.8 24 18-41 170-193 (301)
318 2ghi_A Transport protein; mult 97.1 0.00029 9.8E-09 50.7 3.1 23 18-40 47-69 (260)
319 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00027 9.1E-09 50.6 2.9 23 18-40 30-52 (250)
320 2jaq_A Deoxyguanosine kinase; 97.1 0.00027 9.3E-09 48.4 2.9 21 19-39 2-22 (205)
321 2ehv_A Hypothetical protein PH 97.1 0.00026 9E-09 50.1 2.9 22 17-38 30-51 (251)
322 3aez_A Pantothenate kinase; tr 97.1 0.00029 9.8E-09 52.1 3.1 26 14-39 87-112 (312)
323 1zak_A Adenylate kinase; ATP:A 97.1 0.00032 1.1E-08 49.0 3.2 24 16-39 4-27 (222)
324 3lnc_A Guanylate kinase, GMP k 97.1 0.00016 5.5E-09 50.9 1.6 24 17-40 27-51 (231)
325 2c95_A Adenylate kinase 1; tra 97.1 0.00037 1.3E-08 47.4 3.4 24 16-39 8-31 (196)
326 2zu0_C Probable ATP-dependent 97.1 0.00028 9.7E-09 50.9 2.9 23 18-40 47-69 (267)
327 2v54_A DTMP kinase, thymidylat 97.1 0.00037 1.3E-08 47.8 3.4 25 16-40 3-27 (204)
328 2ihy_A ABC transporter, ATP-bi 97.1 0.00031 1.1E-08 51.1 3.1 23 18-40 48-70 (279)
329 2ixe_A Antigen peptide transpo 97.1 0.00032 1.1E-08 50.8 3.1 22 19-40 47-68 (271)
330 2nq2_C Hypothetical ABC transp 97.1 0.00029 9.9E-09 50.5 2.8 23 19-41 33-55 (253)
331 1zd8_A GTP:AMP phosphotransfer 97.1 0.00036 1.2E-08 49.0 3.2 23 16-38 6-28 (227)
332 2yz2_A Putative ABC transporte 97.1 0.0003 1E-08 50.7 2.9 23 18-40 34-56 (266)
333 1uf9_A TT1252 protein; P-loop, 97.1 0.00036 1.2E-08 47.8 3.2 27 14-40 5-31 (203)
334 2qt1_A Nicotinamide riboside k 97.1 0.00038 1.3E-08 48.0 3.3 25 16-40 20-44 (207)
335 2jeo_A Uridine-cytidine kinase 97.1 0.00036 1.2E-08 49.6 3.1 25 15-39 23-47 (245)
336 2yvu_A Probable adenylyl-sulfa 97.0 0.00035 1.2E-08 47.4 2.9 27 13-39 9-35 (186)
337 1nn5_A Similar to deoxythymidy 97.0 0.00043 1.5E-08 47.9 3.5 24 16-39 8-31 (215)
338 2yv5_A YJEQ protein; hydrolase 97.0 0.00033 1.1E-08 51.5 2.9 22 17-38 165-186 (302)
339 3iij_A Coilin-interacting nucl 97.0 0.00041 1.4E-08 46.7 3.2 23 16-38 10-32 (180)
340 3be4_A Adenylate kinase; malar 97.0 0.00043 1.5E-08 48.2 3.3 24 16-39 4-27 (217)
341 2wwf_A Thymidilate kinase, put 97.0 0.00044 1.5E-08 47.7 3.4 24 16-39 9-32 (212)
342 1sq5_A Pantothenate kinase; P- 97.0 0.00044 1.5E-08 50.9 3.5 25 15-39 78-102 (308)
343 1gvn_B Zeta; postsegregational 97.0 0.00038 1.3E-08 50.8 3.1 24 16-39 32-55 (287)
344 1via_A Shikimate kinase; struc 97.0 0.00037 1.3E-08 46.8 2.8 21 19-39 6-26 (175)
345 1e4v_A Adenylate kinase; trans 97.0 0.00042 1.4E-08 48.1 3.1 21 19-39 2-22 (214)
346 2pjz_A Hypothetical protein ST 97.0 0.00041 1.4E-08 50.0 3.1 24 18-41 31-54 (263)
347 1odf_A YGR205W, hypothetical 3 97.0 0.00042 1.4E-08 50.7 3.2 25 14-38 28-52 (290)
348 2f1r_A Molybdopterin-guanine d 97.0 0.00018 6.3E-09 48.4 1.1 22 19-40 4-25 (171)
349 1ukz_A Uridylate kinase; trans 97.0 0.0005 1.7E-08 47.2 3.3 25 15-39 13-37 (203)
350 1lw7_A Transcriptional regulat 97.0 0.00033 1.1E-08 52.8 2.4 24 17-40 170-193 (365)
351 4e22_A Cytidylate kinase; P-lo 97.0 0.00056 1.9E-08 48.9 3.5 24 15-38 25-48 (252)
352 3nh6_A ATP-binding cassette SU 96.9 0.0003 1E-08 51.8 2.0 23 18-40 81-103 (306)
353 3bos_A Putative DNA replicatio 96.9 0.001 3.5E-08 46.5 4.6 24 16-39 51-74 (242)
354 2bbs_A Cystic fibrosis transme 96.9 0.00052 1.8E-08 50.2 3.1 23 19-41 66-88 (290)
355 1rj9_A FTSY, signal recognitio 96.9 0.0006 2.1E-08 50.2 3.4 124 16-146 101-276 (304)
356 3umf_A Adenylate kinase; rossm 96.9 0.00049 1.7E-08 48.1 2.8 24 16-39 27-51 (217)
357 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00048 1.6E-08 51.8 2.9 23 19-41 32-54 (359)
358 2pt5_A Shikimate kinase, SK; a 96.9 0.00057 1.9E-08 45.4 3.0 21 19-39 2-22 (168)
359 2bwj_A Adenylate kinase 5; pho 96.9 0.00062 2.1E-08 46.4 3.2 23 17-39 12-34 (199)
360 2ze6_A Isopentenyl transferase 96.9 0.00048 1.6E-08 49.3 2.7 21 19-39 3-23 (253)
361 3jvv_A Twitching mobility prot 96.9 0.00072 2.5E-08 50.9 3.7 29 11-39 117-145 (356)
362 2x8a_A Nuclear valosin-contain 96.9 0.00048 1.7E-08 49.9 2.7 22 19-40 46-67 (274)
363 2xb4_A Adenylate kinase; ATP-b 96.9 0.00061 2.1E-08 47.7 3.2 21 19-39 2-22 (223)
364 3tui_C Methionine import ATP-b 96.9 0.00052 1.8E-08 51.7 2.9 23 18-40 55-77 (366)
365 1xjc_A MOBB protein homolog; s 96.9 0.00066 2.2E-08 45.5 3.1 23 17-39 4-26 (169)
366 3b9q_A Chloroplast SRP recepto 96.9 0.00049 1.7E-08 50.6 2.7 23 17-39 100-122 (302)
367 2kjq_A DNAA-related protein; s 96.9 0.0004 1.4E-08 45.6 2.0 25 16-40 35-59 (149)
368 2p5t_B PEZT; postsegregational 96.9 0.00041 1.4E-08 49.6 2.1 24 16-39 31-54 (253)
369 1qf9_A UMP/CMP kinase, protein 96.9 0.00071 2.4E-08 45.8 3.2 22 18-39 7-28 (194)
370 2vli_A Antibiotic resistance p 96.9 0.00044 1.5E-08 46.6 2.2 24 16-39 4-27 (183)
371 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00056 1.9E-08 50.9 2.9 24 17-40 171-194 (330)
372 1ak2_A Adenylate kinase isoenz 96.9 0.00078 2.7E-08 47.4 3.5 25 15-39 14-38 (233)
373 2z0h_A DTMP kinase, thymidylat 96.9 0.0006 2.1E-08 46.4 2.8 21 19-39 2-22 (197)
374 1z47_A CYSA, putative ABC-tran 96.8 0.0006 2E-08 51.2 2.9 22 19-40 43-64 (355)
375 2gza_A Type IV secretion syste 96.8 0.00054 1.9E-08 51.6 2.7 25 16-40 174-198 (361)
376 1vht_A Dephospho-COA kinase; s 96.8 0.00071 2.4E-08 47.0 3.2 23 17-39 4-26 (218)
377 1gtv_A TMK, thymidylate kinase 96.8 0.00025 8.4E-09 49.1 0.7 21 19-39 2-22 (214)
378 2yyz_A Sugar ABC transporter, 96.8 0.00061 2.1E-08 51.3 2.9 23 18-40 30-52 (359)
379 3rlf_A Maltose/maltodextrin im 96.8 0.00061 2.1E-08 51.6 2.9 22 19-40 31-52 (381)
380 1ixz_A ATP-dependent metallopr 96.8 0.00059 2E-08 48.6 2.7 22 19-40 51-72 (254)
381 1uj2_A Uridine-cytidine kinase 96.8 0.00072 2.5E-08 48.2 3.1 25 15-39 20-44 (252)
382 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00062 2.1E-08 47.5 2.7 22 18-39 24-45 (235)
383 2ewv_A Twitching motility prot 96.8 0.0009 3.1E-08 50.6 3.8 25 15-39 134-158 (372)
384 2it1_A 362AA long hypothetical 96.8 0.00064 2.2E-08 51.2 2.9 23 18-40 30-52 (362)
385 3r20_A Cytidylate kinase; stru 96.8 0.00079 2.7E-08 47.6 3.2 24 15-38 7-30 (233)
386 2pbr_A DTMP kinase, thymidylat 96.8 0.00073 2.5E-08 45.8 3.0 21 19-39 2-22 (195)
387 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00066 2.3E-08 48.7 2.9 22 18-39 5-26 (260)
388 1e6c_A Shikimate kinase; phosp 96.8 0.00069 2.3E-08 45.2 2.8 21 19-39 4-24 (173)
389 2iyv_A Shikimate kinase, SK; t 96.8 0.00075 2.6E-08 45.6 2.9 21 19-39 4-24 (184)
390 1g29_1 MALK, maltose transport 96.8 0.0007 2.4E-08 51.2 2.9 23 19-41 31-53 (372)
391 2pez_A Bifunctional 3'-phospho 96.8 0.00082 2.8E-08 45.2 3.0 24 16-39 4-27 (179)
392 1v43_A Sugar-binding transport 96.8 0.00073 2.5E-08 51.1 2.9 23 18-40 38-60 (372)
393 2vp4_A Deoxynucleoside kinase; 96.8 0.00091 3.1E-08 47.0 3.3 26 15-40 18-43 (230)
394 1zuh_A Shikimate kinase; alpha 96.7 0.0009 3.1E-08 44.5 3.0 22 18-39 8-29 (168)
395 1p9r_A General secretion pathw 96.7 0.0014 4.6E-08 50.4 4.3 31 9-39 159-189 (418)
396 2chg_A Replication factor C sm 96.7 0.0018 6E-08 44.6 4.5 22 18-39 39-60 (226)
397 1cr0_A DNA primase/helicase; R 96.7 0.00076 2.6E-08 49.2 2.7 22 18-39 36-57 (296)
398 2f6r_A COA synthase, bifunctio 96.7 0.001 3.4E-08 48.4 3.2 24 15-38 73-96 (281)
399 1in4_A RUVB, holliday junction 96.7 0.00082 2.8E-08 50.0 2.7 23 18-40 52-74 (334)
400 2og2_A Putative signal recogni 96.7 0.00082 2.8E-08 50.6 2.7 23 17-39 157-179 (359)
401 3d31_A Sulfate/molybdate ABC t 96.7 0.00058 2E-08 51.2 1.8 23 18-40 27-49 (348)
402 2oap_1 GSPE-2, type II secreti 96.7 0.0017 5.8E-08 51.2 4.6 25 16-40 259-283 (511)
403 2cvh_A DNA repair and recombin 96.7 0.0009 3.1E-08 46.3 2.7 23 17-39 20-42 (220)
404 1iy2_A ATP-dependent metallopr 96.7 0.00088 3E-08 48.4 2.7 22 19-40 75-96 (278)
405 3cwq_A Para family chromosome 96.7 0.012 4.1E-07 40.6 8.4 67 60-132 67-134 (209)
406 3gd7_A Fusion complex of cysti 96.7 0.00094 3.2E-08 50.8 2.9 23 18-40 48-70 (390)
407 3h4m_A Proteasome-activating n 96.7 0.0019 6.4E-08 46.7 4.4 26 15-40 49-74 (285)
408 4eaq_A DTMP kinase, thymidylat 96.7 0.0011 3.8E-08 46.6 3.1 24 16-39 25-48 (229)
409 2w58_A DNAI, primosome compone 96.7 0.002 6.8E-08 44.1 4.3 22 18-39 55-76 (202)
410 1m7g_A Adenylylsulfate kinase; 96.6 0.0017 5.7E-08 45.0 3.8 25 15-39 23-47 (211)
411 1d2n_A N-ethylmaleimide-sensit 96.6 0.0015 5E-08 47.0 3.6 27 14-40 61-87 (272)
412 1n0w_A DNA repair protein RAD5 96.6 0.001 3.5E-08 46.8 2.7 23 17-39 24-46 (243)
413 1p5z_B DCK, deoxycytidine kina 96.6 0.0011 3.8E-08 47.5 2.9 31 10-40 17-47 (263)
414 2yhs_A FTSY, cell division pro 96.6 0.00099 3.4E-08 52.1 2.7 23 17-39 293-315 (503)
415 3nwj_A ATSK2; P loop, shikimat 96.6 0.001 3.6E-08 47.5 2.6 23 17-39 48-70 (250)
416 1oxx_K GLCV, glucose, ABC tran 96.6 0.00056 1.9E-08 51.4 1.2 24 18-41 32-55 (353)
417 1lv7_A FTSH; alpha/beta domain 96.6 0.0012 4E-08 47.2 2.7 23 17-39 45-67 (257)
418 3n70_A Transport activator; si 96.6 0.0018 6.3E-08 42.0 3.5 27 14-40 21-47 (145)
419 1ltq_A Polynucleotide kinase; 96.5 0.0013 4.4E-08 48.1 2.9 22 18-39 3-24 (301)
420 2grj_A Dephospho-COA kinase; T 96.5 0.0014 4.7E-08 44.9 2.8 24 16-39 11-34 (192)
421 1nij_A Hypothetical protein YJ 96.5 0.0011 3.6E-08 49.1 2.3 22 19-40 6-27 (318)
422 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0012 4E-08 51.4 2.6 27 15-41 136-162 (460)
423 3pxg_A Negative regulator of g 96.5 0.0027 9.3E-08 49.5 4.6 34 7-40 191-224 (468)
424 1q3t_A Cytidylate kinase; nucl 96.5 0.0019 6.3E-08 45.6 3.4 25 15-39 14-38 (236)
425 2obl_A ESCN; ATPase, hydrolase 96.5 0.0015 5.2E-08 48.9 2.9 26 16-41 70-95 (347)
426 3kta_A Chromosome segregation 96.5 0.0016 5.6E-08 43.8 2.7 21 19-39 28-48 (182)
427 1sxj_E Activator 1 40 kDa subu 96.4 0.0022 7.6E-08 47.8 3.7 22 18-39 37-58 (354)
428 1sxj_C Activator 1 40 kDa subu 96.4 0.003 1E-07 47.0 4.3 23 18-40 47-69 (340)
429 3cf0_A Transitional endoplasmi 96.4 0.003 1E-07 46.2 4.2 26 15-40 47-72 (301)
430 1svm_A Large T antigen; AAA+ f 96.4 0.0016 5.4E-08 49.4 2.7 24 16-39 168-191 (377)
431 2ga8_A Hypothetical 39.9 kDa p 96.4 0.003 1E-07 47.3 4.2 26 14-39 21-46 (359)
432 3syl_A Protein CBBX; photosynt 96.4 0.0035 1.2E-07 45.8 4.5 25 15-39 65-89 (309)
433 1nlf_A Regulatory protein REPA 96.4 0.0016 5.6E-08 47.0 2.7 22 18-39 31-52 (279)
434 1fnn_A CDC6P, cell division co 96.4 0.0028 9.7E-08 47.7 4.0 22 19-40 46-67 (389)
435 3gmt_A Adenylate kinase; ssgci 96.4 0.0023 7.8E-08 45.1 3.2 24 16-39 7-30 (230)
436 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0037 1.3E-07 48.3 4.6 60 14-73 64-152 (457)
437 1a7j_A Phosphoribulokinase; tr 96.4 0.0012 4.1E-08 48.2 1.8 25 15-39 3-27 (290)
438 1njg_A DNA polymerase III subu 96.3 0.002 6.7E-08 44.9 2.7 22 18-39 46-67 (250)
439 2dr3_A UPF0273 protein PH0284; 96.3 0.002 7E-08 45.3 2.8 21 18-38 24-44 (247)
440 3b60_A Lipid A export ATP-bind 96.3 0.002 6.9E-08 51.6 3.0 23 18-40 370-392 (582)
441 3co5_A Putative two-component 96.3 0.0023 7.8E-08 41.5 2.8 26 15-40 25-50 (143)
442 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0022 7.5E-08 50.9 3.1 23 18-40 48-70 (538)
443 2px0_A Flagellar biosynthesis 96.3 0.0026 9E-08 46.6 3.3 23 16-38 104-126 (296)
444 3t15_A Ribulose bisphosphate c 96.3 0.0026 8.9E-08 46.5 3.3 24 16-39 35-58 (293)
445 3ozx_A RNAse L inhibitor; ATP 96.3 0.0021 7.1E-08 51.0 2.9 22 19-40 27-48 (538)
446 3euj_A Chromosome partition pr 96.3 0.002 6.9E-08 50.3 2.7 22 18-39 30-51 (483)
447 1vma_A Cell division protein F 96.3 0.0021 7.2E-08 47.3 2.7 23 17-39 104-126 (306)
448 3b9p_A CG5977-PA, isoform A; A 96.3 0.003 1E-07 45.9 3.5 24 16-39 53-76 (297)
449 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0029 1E-07 45.0 3.4 24 16-39 38-61 (262)
450 4a82_A Cystic fibrosis transme 96.3 0.002 6.7E-08 51.6 2.7 23 18-40 368-390 (578)
451 2dpy_A FLII, flagellum-specifi 96.3 0.0022 7.6E-08 49.6 2.9 26 16-41 156-181 (438)
452 1pzn_A RAD51, DNA repair and r 96.3 0.0021 7.3E-08 48.2 2.7 24 17-40 131-154 (349)
453 2qgz_A Helicase loader, putati 96.3 0.0046 1.6E-07 45.5 4.4 23 17-39 152-174 (308)
454 3b5x_A Lipid A export ATP-bind 96.2 0.0023 8E-08 51.2 3.0 23 18-40 370-392 (582)
455 1sxj_D Activator 1 41 kDa subu 96.2 0.0042 1.4E-07 46.1 4.2 23 18-40 59-81 (353)
456 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0025 8.5E-08 41.7 2.6 20 19-38 25-44 (149)
457 3ake_A Cytidylate kinase; CMP 96.2 0.0027 9.3E-08 43.5 2.9 21 19-39 4-24 (208)
458 3te6_A Regulatory protein SIR3 96.2 0.0023 8E-08 47.3 2.7 29 12-40 40-68 (318)
459 3zvl_A Bifunctional polynucleo 96.2 0.0034 1.2E-07 48.2 3.6 24 16-39 257-280 (416)
460 2yl4_A ATP-binding cassette SU 96.2 0.0021 7.2E-08 51.6 2.5 23 18-40 371-393 (595)
461 2h92_A Cytidylate kinase; ross 96.2 0.0029 1E-07 43.8 2.9 23 17-39 3-25 (219)
462 3j16_B RLI1P; ribosome recycli 96.2 0.0026 8.9E-08 51.2 2.9 23 18-40 104-126 (608)
463 2qmh_A HPR kinase/phosphorylas 96.2 0.003 1E-07 43.4 2.8 25 17-41 34-58 (205)
464 3qf4_B Uncharacterized ABC tra 96.2 0.0024 8E-08 51.4 2.6 23 18-40 382-404 (598)
465 1l8q_A Chromosomal replication 96.2 0.0026 9E-08 46.9 2.7 23 17-39 37-59 (324)
466 4b4t_M 26S protease regulatory 96.2 0.005 1.7E-07 47.5 4.2 31 10-40 208-238 (434)
467 3qf4_A ABC transporter, ATP-bi 96.1 0.0027 9.3E-08 50.9 2.8 23 18-40 370-392 (587)
468 3bk7_A ABC transporter ATP-bin 96.1 0.0034 1.1E-07 50.6 3.1 24 18-41 118-141 (607)
469 1u0j_A DNA replication protein 96.1 0.0077 2.6E-07 43.3 4.6 32 8-39 92-126 (267)
470 3crm_A TRNA delta(2)-isopenten 96.1 0.0033 1.1E-07 46.5 2.8 22 18-39 6-27 (323)
471 3uk6_A RUVB-like 2; hexameric 96.1 0.0068 2.3E-07 45.4 4.6 22 18-39 71-92 (368)
472 3d3q_A TRNA delta(2)-isopenten 96.1 0.0034 1.2E-07 46.8 2.9 22 18-39 8-29 (340)
473 2qby_A CDC6 homolog 1, cell di 96.1 0.003 1E-07 47.3 2.7 25 15-39 43-67 (386)
474 4b4t_L 26S protease subunit RP 96.1 0.0059 2E-07 47.1 4.2 32 9-40 207-238 (437)
475 4b4t_K 26S protease regulatory 96.1 0.0058 2E-07 47.0 4.2 26 14-39 203-228 (428)
476 3ozx_A RNAse L inhibitor; ATP 96.1 0.0033 1.1E-07 49.9 2.9 23 19-41 296-318 (538)
477 1c9k_A COBU, adenosylcobinamid 96.0 0.0039 1.3E-07 42.2 2.8 21 20-40 2-22 (180)
478 4fcw_A Chaperone protein CLPB; 96.0 0.0042 1.4E-07 45.4 3.2 23 18-40 48-70 (311)
479 1ofh_A ATP-dependent HSL prote 96.0 0.0043 1.5E-07 45.2 3.2 24 16-39 49-72 (310)
480 1yqt_A RNAse L inhibitor; ATP- 96.0 0.004 1.4E-07 49.5 3.1 24 18-41 313-336 (538)
481 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0074 2.5E-07 49.8 4.7 35 5-39 195-229 (758)
482 4b4t_J 26S protease regulatory 96.0 0.0064 2.2E-07 46.4 4.0 31 9-39 174-204 (405)
483 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.004 1.4E-07 47.0 2.9 19 20-38 26-44 (365)
484 3pxi_A Negative regulator of g 95.9 0.0075 2.6E-07 49.8 4.6 35 6-40 190-224 (758)
485 3exa_A TRNA delta(2)-isopenten 95.9 0.0049 1.7E-07 45.4 3.1 23 18-40 4-26 (322)
486 3lda_A DNA repair protein RAD5 95.9 0.0041 1.4E-07 47.5 2.8 21 18-38 179-199 (400)
487 2ocp_A DGK, deoxyguanosine kin 95.9 0.005 1.7E-07 43.5 3.1 23 17-39 2-24 (241)
488 3bk7_A ABC transporter ATP-bin 95.9 0.0044 1.5E-07 49.9 3.1 24 18-41 383-406 (607)
489 2r62_A Cell division protease 95.9 0.003 1E-07 45.2 1.9 23 17-39 44-66 (268)
490 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0042 1.4E-07 46.0 2.7 24 17-40 45-68 (322)
491 3v9p_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 43.4 2.8 25 15-39 23-47 (227)
492 3a8t_A Adenylate isopentenyltr 95.9 0.0061 2.1E-07 45.4 3.5 23 18-40 41-63 (339)
493 3lv8_A DTMP kinase, thymidylat 95.9 0.0062 2.1E-07 43.1 3.3 25 15-39 25-49 (236)
494 3j16_B RLI1P; ribosome recycli 95.9 0.0045 1.5E-07 49.8 2.9 22 20-41 381-402 (608)
495 4edh_A DTMP kinase, thymidylat 95.8 0.0059 2E-07 42.5 3.1 25 15-39 4-28 (213)
496 3foz_A TRNA delta(2)-isopenten 95.8 0.005 1.7E-07 45.3 2.8 22 18-39 11-32 (316)
497 3pfi_A Holliday junction ATP-d 95.8 0.01 3.4E-07 44.0 4.5 25 15-39 53-77 (338)
498 1iqp_A RFCS; clamp loader, ext 95.8 0.01 3.5E-07 43.4 4.4 23 18-40 47-69 (327)
499 3cr8_A Sulfate adenylyltranfer 95.8 0.0035 1.2E-07 49.9 1.9 25 16-40 368-392 (552)
500 3eie_A Vacuolar protein sortin 95.8 0.0065 2.2E-07 44.9 3.3 23 17-39 51-73 (322)
No 1
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-38 Score=218.12 Aligned_cols=179 Identities=57% Similarity=1.013 Sum_probs=157.4
Q ss_pred CcchHHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 1 MGLSFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
||..+++++++.+. ++.++|+++|++|+|||||++++.++.+....+|++.....+...+..+.+||+||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89899999999988 89999999999999999999999988887778888888888888889999999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999988765557899999999999988777777877777666666778999999
Q ss_pred ccCCCCHHHHHHHHHHHhhc
Q 030187 160 ATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~ 179 (181)
|++|.|+++++++|.+.+.+
T Consensus 161 a~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 2
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-38 Score=218.77 Aligned_cols=178 Identities=47% Similarity=0.880 Sum_probs=154.5
Q ss_pred CcchHHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccc
Q 030187 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
||..|+++++ .+.++.++|+++|++|+|||||++++.++.+....+|++.....+..++..+.+||+||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8999999998 888999999999999999999999999888777788888888788888999999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++++|+|++++++++....|+.++.......+.|+++|+||+|+.+....+++.+.+....+...+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999999887655568999999999999877667777777665545566789999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|+++++++|.+.+..
T Consensus 160 ~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=3.5e-38 Score=218.99 Aligned_cols=180 Identities=52% Similarity=0.976 Sum_probs=158.1
Q ss_pred CcchHHHHHH--hhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc
Q 030187 1 MGLSFTKLFS--RLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (181)
||..++++++ +.+. ++.++|+++|++|+|||||++++..+.+....||++.....+...+..+.+|||||+++++..
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 6766666666 6777 889999999999999999999999888887888988888888888999999999999999999
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
+..+++++|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.++.......++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999999888766678999999999999887777778777776666667789999
Q ss_pred ecccCCCCHHHHHHHHHHHhhcc
Q 030187 158 TCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+||++|.|+++++++|.+.+.++
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
No 4
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=6.7e-38 Score=218.37 Aligned_cols=175 Identities=81% Similarity=1.313 Sum_probs=152.5
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
..++++.+.++.++|+++|++|+|||||++++.++.+....||++.....+...++.+.+||+||+++++..+..+++++
T Consensus 18 ~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNT 97 (192)
T ss_dssp CCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTC
T ss_pred HHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 45577788889999999999999999999999998888778898888778888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|
T Consensus 98 d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 98 QGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999999999999988776667899999999999988777778888887766666788999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
+++++++|.+.+.+|
T Consensus 178 i~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 178 LYDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988764
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2.6e-37 Score=214.07 Aligned_cols=178 Identities=47% Similarity=0.877 Sum_probs=148.0
Q ss_pred CcchHHHHHHhhhc-cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCcccccc
Q 030187 1 MGLSFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (181)
|| .|+ .+.+.+. ++.++|+++|++|+|||||++++.++......||++.....+..++..+++||+||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 56 444 4555555 78899999999999999999999988866777888888888888899999999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEec
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++++|++++|+|++++++++....|+.++.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999999988875557899999999999988777777777776555556778999999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|++|.|+++++++|.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=3.9e-36 Score=205.16 Aligned_cols=166 Identities=57% Similarity=1.014 Sum_probs=150.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEEC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 94 (181)
++.++|+++|++|+|||||++++.++.+....||.+.....+......+.+||+||++++...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 45799999999999999999999999888888899988888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
++++++.....++..++......+.|+++|+||+|+.+....+++...++...+...+++++++||++|.|+++++++|.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999988776557899999999999988777777877777666666788999999999999999999999
Q ss_pred HHhhcc
Q 030187 175 NNIANK 180 (181)
Q Consensus 175 ~~l~~~ 180 (181)
+.+.++
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988754
No 7
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.2e-36 Score=210.16 Aligned_cols=173 Identities=47% Similarity=0.843 Sum_probs=149.0
Q ss_pred HHHhhhc--cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCc
Q 030187 8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 8 ~~~~~~~--~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
++.+... ++.++|+++|++|+|||||++++.+..+....||.+.....+...++.+.+||+||+++++..+..+++++
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 3444445 57899999999999999999999998877778888888777888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++|+|+++++++.....|+.+++......+.|+++|+||+|+.+....+++.+.++...+...++++++|||++|.|
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 99999999999999999999998887765557899999999999987766677777776655556678999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|++|.+.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 165 VQDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1.3e-36 Score=206.32 Aligned_cols=163 Identities=92% Similarity=1.407 Sum_probs=144.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (181)
+||+++|++|+|||||++++.++.+....||.+.....+...++.+.+||+||+++++..+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887778888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+++.....|+..+......++.|+++|+||+|+.+....+++...++...+...+++++++||++|.|+++++++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999888766667899999999999988777777877777666666778999999999999999999999988
Q ss_pred hcc
Q 030187 178 ANK 180 (181)
Q Consensus 178 ~~~ 180 (181)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 754
No 9
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=1.3e-35 Score=206.38 Aligned_cols=165 Identities=38% Similarity=0.610 Sum_probs=140.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...+.++|+++|++|+|||||++++.++.+....+|.+.....+..+++.+.+||+||+++++..+..+++++|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 44567899999999999999999999988877788888888888888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------ccCcceEEEEecccCCCC
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-------LRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 165 (181)
|++++++++....|+..+.......++|+++|+||+|+.+....+++.+.+.... ....++++++|||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999988765557899999999999987666677766655432 233567899999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++|++|.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.4e-37 Score=220.12 Aligned_cols=160 Identities=17% Similarity=0.354 Sum_probs=121.1
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.+||+++|++|+|||||+++|..+.+. ...||++.++.. +.. ..+.+++|||+|+++|+.+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 346799999999999999999999988876 456788766543 222 348899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||++++++|+++..|+..+.... .+++|+++||||+|+.+. ...++..+ .++..+++|++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-----HHHHhCCeeEEEeCCCCcCH
Confidence 99999999999999999998876543 368999999999998753 22222211 12223457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|+.|++.|.+
T Consensus 164 ~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 164 KQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 11
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.9e-35 Score=204.03 Aligned_cols=165 Identities=47% Similarity=0.868 Sum_probs=144.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...+.++|+++|++|+|||||+++|.++.+....+|.+.....+...+..+.+||+||++++...+..+++++|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34577999999999999999999999998877788888888788888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999999887655578999999999999887677777777766656667789999999999999999999
Q ss_pred HHHHh
Q 030187 173 LSNNI 177 (181)
Q Consensus 173 l~~~l 177 (181)
|.+.+
T Consensus 177 l~~~l 181 (181)
T 2h17_A 177 MMSRL 181 (181)
T ss_dssp HHTC-
T ss_pred HHhhC
Confidence 98653
No 12
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.8e-35 Score=206.98 Aligned_cols=165 Identities=29% Similarity=0.606 Sum_probs=133.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
...+.++|+++|++|+|||||++++.++.+....||++.....+..+++.+.+|||||+++++..+..+++++|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 44677999999999999999999999988777778888777778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------c---cCcceEEEEecc
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------L---RQRHWYIQSTCA 160 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 160 (181)
|+++++++.....|+.+++......++|+++|+||+|+.+....+++.+.+.... + ...++++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999988765556899999999999987666666666554321 1 124678999999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030187 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l 177 (181)
++|.|++++|++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
No 13
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2.1e-35 Score=205.02 Aligned_cols=168 Identities=30% Similarity=0.659 Sum_probs=146.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
..++.++|+++|++|+|||||+++|.++.+. ...+|++..+..+...++.+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 3456799999999999999999999988775 567888888888888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|+++++++.....|+..++......+.|+++|+||+|+......+++...+........+++++++||++|.|++++|+
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999999999988765557899999999999987766677777776655556678899999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
+|.+.+.++
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999987653
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=2e-35 Score=206.36 Aligned_cols=168 Identities=36% Similarity=0.653 Sum_probs=143.4
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccc--cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.....+|+++|++|+|||||+++|.+..+... .+|++.....++...+.+.+|||||++++...+..+++++|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 4455778999999999999999999999887653 78999888888889999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEeccc
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDEL-------RDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (181)
+|||++++++|.....|+..++..... .++|+++|+||+|+......+++...++.... +..+++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999988775322 27899999999999988777788777775544 5567899999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.|++++|++|.+.+.+
T Consensus 172 ~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 15
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=216.47 Aligned_cols=168 Identities=92% Similarity=1.400 Sum_probs=148.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 92 (181)
..++.++|+|+|++|+|||||+++|.+..+....||++..+..+...++.+++|||||++.+...+..+++.+|++|+||
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34567899999999999999999999998887788999999899999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
|++++++|.....++..++.....+++|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+.
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 320 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999988776678999999999999988888889888888877778899999999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
|.+.+.++
T Consensus 321 l~~~l~~~ 328 (329)
T 3o47_A 321 LSNQLRNQ 328 (329)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhc
Confidence 99988754
No 16
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=199.54 Aligned_cols=167 Identities=43% Similarity=0.777 Sum_probs=141.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC--cccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
...+.++|+++|++|+|||||+++|.+.. .....+|.+.....+...+..+.+||+||++++...+..+++++|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34577999999999999999999999887 3456678888877788888999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+|+++++++.....|+..+...... .+.|+++|+||+|+.+....+++.+.+....+...+++++++||++|.|+++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 99999999999999999988876554 6799999999999987766677776665444445578999999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
++++|.+.+.+
T Consensus 177 l~~~l~~~i~~ 187 (190)
T 2h57_A 177 GVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=1.1e-32 Score=216.77 Aligned_cols=167 Identities=72% Similarity=1.249 Sum_probs=152.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.++.++|+++|.+|+|||||+++|.+..+....+|++..+..+...++.+.+|||+|++++...+..+++++|++|+|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 34669999999999999999999999998888899999999999899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
++++++|.....|+.+++......++|+++|+||+|+......+++...++.......+++++++||++|.|++++|++|
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999887666789999999999998877778888888877777778899999999999999999999
Q ss_pred HHHhhcc
Q 030187 174 SNNIANK 180 (181)
Q Consensus 174 ~~~l~~~ 180 (181)
.+.+.++
T Consensus 479 ~~~~~~~ 485 (497)
T 3lvq_E 479 TSNYKSK 485 (497)
T ss_dssp HHHCC--
T ss_pred HHHHHhc
Confidence 9987654
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.5e-33 Score=191.52 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=105.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 93 (181)
.+||+++|++|+|||||++++.+.......++.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776555555554432 2222 45789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
++++++++....|+..+......+++|+++|+||+|+.+.... .+....+. ...+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA----VVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH----HHTTCEEEECBGGGTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH----HHhCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999999887666678999999999998754221 11111111 112357999999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
|.+.+.++
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988653
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-33 Score=189.27 Aligned_cols=164 Identities=21% Similarity=0.395 Sum_probs=125.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+.++|+++|++|+|||||++++.+..+. ...++.+.... .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4589999999999999999999988765 34566665442 3333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+++++++.....|+..+.... .++.|+++|+||+|+.......++............+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999988887776543 3589999999999986542111111001001111234579999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
++|.+.+.+|
T Consensus 161 ~~l~~~i~~k 170 (170)
T 1ek0_A 161 LGIGEKIPLK 170 (170)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHhhC
Confidence 9999988764
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.2e-32 Score=189.59 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=126.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.++.+. ...+|.+..+. .+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 346799999999999999999999977754 34556665542 233343 78899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHH
Confidence 999999999999999998888776655689999999999986532 222222111 1224479999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|+.|.+.+.++
T Consensus 158 ~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 158 DVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 21
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=9.4e-33 Score=188.99 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=114.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEc--CEEEEEEEcCCCCC--ccccccccccCccEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYK--NISFTVWDVGGQDK--IRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~ 88 (181)
++.++|+++|++|+|||||+++|.+..+....++.+.+. ..+... .+.+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467899999999999999999999988765555555443 334443 36889999999987 566677888999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++... + ....+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCCH
Confidence 9999999999999999888877665444689999999999997642 2222211 1 1112357999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 22
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.8e-33 Score=193.89 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=124.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+.++.++|+++|++|+|||||+++|.+..+.. ..+|.+..+.. +....+.+.+||+||++++...+..+++++|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 445678999999999999999999999887653 34555544322 23356889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++++.+..|+..+.......++|+++|+||+|+..... ..+.. .+ ....+++++++||++|.|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK-KL----AESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH-HH----HHHhCCeEEEEeCCCCCC
Confidence 999999999999999999998888776667899999999999875322 12211 11 112235799999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|++|.+.+.++
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987643
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.98 E-value=1.8e-32 Score=189.09 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=127.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
...+.+||+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 3456799999999999999999999987754 344555544422 2333 36678899999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEeccc-CCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCAT-SGEG 165 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~ 165 (181)
++|||+++++++..+..|+..+.......++|+++|+||+|+.+. ...++...... ..+++++++||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCC
Confidence 999999999999999998888776555578999999999998753 22222211111 122469999999 9999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|+.|.+.+.++
T Consensus 169 v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988764
No 24
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.98 E-value=2.1e-31 Score=184.36 Aligned_cols=158 Identities=14% Similarity=0.230 Sum_probs=121.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+.+||+++|++|+|||||++++.++.+.. ..+|.+.....+...+ +.+++|||+|+++++ +++++|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 45578999999999999999999999888654 4455443333444444 788899999999887 778899999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+|||++++++|+.+..|+..+.......+.|+++|+||+|+.. ....++........ ..++|+++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----KRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----TTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----CCCeEEEecCCCCCC
Confidence 9999999999999999888887765556899999999999842 12222222111100 124789999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|++|.+.+.+
T Consensus 167 v~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 167 VERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 25
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.98 E-value=2.9e-32 Score=185.11 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=124.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.++.+. ...+|.+..+.. +.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999987765 344565544432 222 357899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
||+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++...... . ..+.+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-Q---WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H---TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-H---ccCCcEEEecCCCCCCHHHH
Confidence 9999999999998888777665444689999999999997542 2222222111 0 11457999999999999999
Q ss_pred HHHHHHHhh
Q 030187 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~l~~~l~ 178 (181)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 26
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.1e-31 Score=187.06 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=125.2
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-----------ccCccceeEEEE-----EEcCEEEEEEEcCCCCCcc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETV-----EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~-----~~~~~~~~i~D~~G~~~~~ 75 (181)
......+||+++|++|+|||||++.+.+..... ..+|++.++... +...+.+++|||||++++.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 344567999999999999999997776544332 234555444322 2235789999999999999
Q ss_pred ccccccccCccEEEEEEECC------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSN------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (181)
..+..+++++|++++|||++ +.+++..+..|+.++ .....++|+++|+||+|+.+....+++.+....
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 162 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP---- 162 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence 99999999999999999999 456777777777666 233468999999999999887666666554443
Q ss_pred Ccce-EEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 150 QRHW-YIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 150 ~~~~-~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
.++ +++++||++|.|++++|++|.+.+.++
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 234 689999999999999999999988653
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=2.3e-32 Score=185.62 Aligned_cols=161 Identities=19% Similarity=0.292 Sum_probs=124.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.++|+++|++|+|||||++++.+..+. ...+|.+..+. .+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 45789999999999999999999988764 33445554432 23333 3689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence 99999999999999888887765554689999999999986532 222222211 12345799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|++|.+.+.+|
T Consensus 157 l~~~l~~~i~~~ 168 (168)
T 1u8z_A 157 VFFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
No 28
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=5e-32 Score=184.47 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=114.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCccc---ccCccceeEEEEEEc--CEEEEEEEcCCCCCccc-cccccccCccEEEE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~il 90 (181)
.+||+++|++|+|||||++++.+..... ..++.......+... .+.+.+||++|++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998765432 222333333344444 47889999999999876 67778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
|||++++++++.+..|+..+.......++|+++|+||+|+.+. ...++... + .+..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-H----HHHcCCcEEEecCccCCCHHH
Confidence 9999999999999999998877655568999999999998743 22222221 1 112245799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.6e-32 Score=187.61 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=127.1
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEE--EE--cCEEEEEEEcCCCCCcccccccc
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~ 81 (181)
.+......++.++|+++|++|+|||||+++|.+..+. ...++.+.++... .. ..+.+.+||+||++++...+..+
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 92 (192)
T 2fg5_A 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92 (192)
T ss_dssp --------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred ccccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence 3444445567899999999999999999999988864 4566777655432 22 45789999999999999999999
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++++|++++|+|+++++++..+..|+..+... ..+++|+++|+||+|+.+. ...++..+.. +..+++++++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~S 166 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETS 166 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECB
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEe
Confidence 99999999999999999999998887776543 2357999999999998742 2233332222 12346899999
Q ss_pred ccCCCCHHHHHHHHHHHhhc
Q 030187 160 ATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~ 179 (181)
|++|.|+++++++|.+.+.+
T Consensus 167 a~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 30
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=2.6e-32 Score=188.34 Aligned_cols=159 Identities=20% Similarity=0.365 Sum_probs=98.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|++.++ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 35689999999999999999999987764 3455666544 3444544 88999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+... ..++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999999999998887776543 23579999999999997532 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.6e-32 Score=186.93 Aligned_cols=161 Identities=19% Similarity=0.407 Sum_probs=118.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccceeEEE--EEEc--CEEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+..++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+.+||+||++++...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999988864 445666665543 3334 3689999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.. ..++... +. +..+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK-LA----KEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHH-HH----HHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHH-HH----HHcCCeEEEEeCCCCCC
Confidence 9999999999999988888777655332 578999999999997542 2222211 11 11234689999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
+++++++|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=6e-32 Score=183.97 Aligned_cols=160 Identities=20% Similarity=0.353 Sum_probs=125.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+.+.++|+++|++|+|||||+++|.++.+.. ..++.+..+. .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567999999999999999999999877653 3456555443 3333 357899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|+|+++++++.....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999988887776543 3589999999999986532 222222211 123457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=5.6e-32 Score=185.98 Aligned_cols=162 Identities=19% Similarity=0.288 Sum_probs=128.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
+..+.++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 3456799999999999999999999988764 34556655543 23344 36899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||+++++++..+..|+..++......+.|+++|+||+|+.+... .++. ..+. ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAFG----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHHH----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH-HHHH----HHcCCeEEEecCCCCCCH
Confidence 99999999999999999988886655556899999999999875322 2222 1111 123457999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 34
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=2.2e-31 Score=184.27 Aligned_cols=161 Identities=19% Similarity=0.303 Sum_probs=122.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.++|+++|++|+|||||+++|.+..+.. ..+|..... ..+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999887643 334443322 223333 3668899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|||+++++++..+..|+..+.......+.|+++|+||+|+.......+....+.. ..+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888877655578999999999999764322222222211 123468999999999999999
Q ss_pred HHHHHHhhc
Q 030187 171 DWLSNNIAN 179 (181)
Q Consensus 171 ~~l~~~l~~ 179 (181)
++|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=3.9e-32 Score=186.48 Aligned_cols=162 Identities=18% Similarity=0.316 Sum_probs=124.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--eeEEEEEEcC---EEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.++.++|+++|++|+|||||+++|.+..+. ...+|++ .....+...+ +.+++||+||++++...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 356799999999999999999999988764 3445665 3344555544 899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
+++|||++++++++.+..|+..+..... ...+|+++|+||+|+.+. ...++..... +..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCC
Confidence 9999999999999888877766544211 124458999999998653 2222222111 112357899999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 030187 164 EGLYEGLDWLSNNIANK 180 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~ 180 (181)
.|++++|++|.+.+.++
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987653
No 36
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.3e-31 Score=182.90 Aligned_cols=160 Identities=24% Similarity=0.387 Sum_probs=127.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999988764 44556555443 3333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+..... .++..... ...+++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 9999999999999998888876655456899999999999965432 22222111 12345799999999999999
Q ss_pred HHHHHHHHhhc
Q 030187 169 GLDWLSNNIAN 179 (181)
Q Consensus 169 ~~~~l~~~l~~ 179 (181)
+|++|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (195)
T 1x3s_A 168 AFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=3.7e-32 Score=188.86 Aligned_cols=162 Identities=20% Similarity=0.374 Sum_probs=128.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEc-----------CEEEEEEEcCCCCCcccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYK-----------NISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~G~~~~~~~ 77 (181)
.....++|+++|++|+|||||+++|.+..+. ...+|++.++. .+... .+.+.+||+||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3456799999999999999999999987764 44567776654 23333 468999999999999999
Q ss_pred ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEE
Q 030187 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+..+++++|++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+. ...++..... ...++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCE
Confidence 99999999999999999999999999888887766554468999999999998753 2222222211 1123468
Q ss_pred EEecccCCCCHHHHHHHHHHHhhc
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 38
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=2.2e-31 Score=188.37 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=121.6
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEEE---EEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
......+||+++|++|+|||||+++|.++.+.. ..+|++..+.. ++...+.+.+||++|++++...+..+++++|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 344567999999999999999999999888654 35676665532 23345889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcccCcc
Q 030187 88 LIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRH 152 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 152 (181)
+++|||+++++++... ..|+..+... . ++.|+++|+||+|+.+. ...++... .++..+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~ 174 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDY-C-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLG 174 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHH-C-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcC
Confidence 9999999999999994 5555554433 2 58999999999998642 22221111 111223
Q ss_pred e-EEEEecccCCCC-HHHHHHHHHHHhhcc
Q 030187 153 W-YIQSTCATSGEG-LYEGLDWLSNNIANK 180 (181)
Q Consensus 153 ~-~~~~~Sa~~~~~-v~~~~~~l~~~l~~~ 180 (181)
+ +|++|||++|.| ++++|+.|.+.+.++
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 4 799999999998 999999999987654
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=4.5e-31 Score=183.86 Aligned_cols=161 Identities=21% Similarity=0.309 Sum_probs=122.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.++.+||+++|++|+|||||++++.++.+. ...+|.+..+.. +.. ..+.+++||+||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 346699999999999999999999988865 345666655433 223 3467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceE-EEEecccCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (181)
+|||+++++++..+...|...+... .++.|+++|+||+|+.+. ...++...... ..++. ++++||++|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCCC
Confidence 9999999999999855555544432 357999999999998742 22222221111 11223 8899999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 174 gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSN 189 (194)
T ss_dssp SHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988653
No 40
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=6.7e-32 Score=189.27 Aligned_cols=160 Identities=21% Similarity=0.374 Sum_probs=121.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...+|++.++ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999988764 3456655443 3455544 79999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcce-EEEEecccCCCCH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHW-YIQSTCATSGEGL 166 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (181)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence 9999999999999988887765533 357999999999999753 2223322211 11234 7899999999999
Q ss_pred HHHHHHHHHHhhcc
Q 030187 167 YEGLDWLSNNIANK 180 (181)
Q Consensus 167 ~~~~~~l~~~l~~~ 180 (181)
+++|++|.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 41
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=1.9e-31 Score=185.10 Aligned_cols=161 Identities=19% Similarity=0.373 Sum_probs=125.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
.+..++|+++|++|+|||||+++|.+..+. ...++.+.++. .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 345689999999999999999999988764 34556665443 3333 347899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 9999999999999888877766543 23579999999999987532 222221111 112347999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 030187 167 YEGLDWLSNNIANK 180 (181)
Q Consensus 167 ~~~~~~l~~~l~~~ 180 (181)
++++++|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=3.2e-31 Score=180.43 Aligned_cols=160 Identities=23% Similarity=0.415 Sum_probs=120.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++.+..+. ...++.+.++ ..+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4589999999999999999999988764 3445555443 334433 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
|+|+++++++..+..|+..+.... .++.|+++|+||+|+.......+....+. +..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 999999999988888877665532 25789999999999954332222111111 1123468999999999999999
Q ss_pred HHHHHHhhcc
Q 030187 171 DWLSNNIANK 180 (181)
Q Consensus 171 ~~l~~~l~~~ 180 (181)
++|.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=2.1e-31 Score=183.31 Aligned_cols=161 Identities=19% Similarity=0.346 Sum_probs=125.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|+|||||++++.+..+.. ..++++..+ ..+... .+.+.+||+||++++...+..+++++|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34567999999999999999999999887653 345555443 333333 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.+++....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence 999999999999999988887766543 3589999999999996532 222322211 12345799999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 162 VKEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 44
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.1e-31 Score=182.80 Aligned_cols=159 Identities=19% Similarity=0.325 Sum_probs=117.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||++++.+..+. ...+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999988764 34566665543 3333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 999999999999988877665432 22478999999999987532 222222211 1224578999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=5.3e-31 Score=180.66 Aligned_cols=163 Identities=13% Similarity=0.283 Sum_probs=124.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||++++.+..+. ...++.+..+ ..+...+ +.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 345689999999999999999999987754 4456666554 3344444 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.... ..++....... ..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCC
Confidence 99999999999998888777665432 22578999999999997432 23333222110 223468999999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988753
No 46
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=183.34 Aligned_cols=158 Identities=22% Similarity=0.401 Sum_probs=123.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 46699999999999999999999988764 3445555443 4455555 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++++++..+..|+..+.... ++.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 9999999999999988887775532 5799999999999875422 12221111 1123468999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 160 ~l~~~l~~~~~~ 171 (181)
T 3tw8_B 160 EMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 47
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=4.1e-32 Score=184.57 Aligned_cols=159 Identities=18% Similarity=0.343 Sum_probs=124.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||++++.+..+. ...+|.+.++ ..+... .+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999988764 3455655443 334433 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++++++.+..|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999998888877765543 578999999999986532 222222211 1224579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
+++++|.+.+.+|
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988764
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.7e-32 Score=189.29 Aligned_cols=159 Identities=19% Similarity=0.334 Sum_probs=124.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.++.+. ...+|++.++. .+...+ +.+++||+||++++...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35689999999999999999999988765 45566665543 344443 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEE-FS----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHH-HH----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888877665432 3578999999999986432 2222221 11 1223568999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1e-31 Score=184.38 Aligned_cols=162 Identities=20% Similarity=0.324 Sum_probs=124.9
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..+|.+... ..+... .+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34567999999999999999999999887643 345555443 233333 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. +..+++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999998888876665432 2578999999999996532 222222211 11345799999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 030187 166 LYEGLDWLSNNIANK 180 (181)
Q Consensus 166 v~~~~~~l~~~l~~~ 180 (181)
++++|++|.+.+.++
T Consensus 165 i~~l~~~l~~~i~~~ 179 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQN 179 (179)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988653
No 50
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=186.72 Aligned_cols=164 Identities=17% Similarity=0.163 Sum_probs=120.7
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccc--eeEEEEEEc--CEEEEEEEcCCCCCccc-cccccccCc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRP-LWRHYFQNT 85 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~ 85 (181)
......++|+++|++|+|||||+++|.+.... ...++.. .....+... .+.+.+||++|++++.. ++..+++++
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 34456799999999999999999999754321 2223222 223334443 47889999999998775 677888999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
|++++|||++++++|..+..|+.++.......++|+++|+||+|+.+.. ..++... +. +..+++++++||++|
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA----GTLSCKHIETSAALH 172 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCEEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH----HHhCCEEEEEcCCCC
Confidence 9999999999999999999998887664444579999999999997532 2222221 11 112357999999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q 030187 164 EGLYEGLDWLSNNIANK 180 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~ 180 (181)
.|++++|+.|++.+.++
T Consensus 173 ~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 173 HNTRELFEGAVRQIRLR 189 (195)
T ss_dssp BSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987643
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.3e-32 Score=192.57 Aligned_cols=166 Identities=19% Similarity=0.371 Sum_probs=116.5
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
++...++.++|+++|++|+|||||+++|.+..+. ...+|.+.++ ..+... .+.+.+||+||++++...+..++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 3455567899999999999999999999988764 3445555433 334443 4789999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-------C-CCHhHHHhhhCCCcccCcceEEE
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-------A-MNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+|++++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+ . ...++. ..+ ....+++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~-~~~----~~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFG-EKL----AMTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHH-HHH----HHHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHH-HHH----HHHcCCeEE
Confidence 99999999999999999988877655432 225789999999999852 1 111111 111 112345799
Q ss_pred EecccCCCCHHHHHHHHHHHhhccC
Q 030187 157 STCATSGEGLYEGLDWLSNNIANKA 181 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~~~ 181 (181)
++||++|.|++++|++|.+.+.+++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~~ 199 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKRT 199 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC--
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999988764
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-32 Score=190.49 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=124.2
Q ss_pred HHHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEEc--CEEEEEEEcCCCCCcccccccccc
Q 030187 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEYK--NISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 83 (181)
++++...++.++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +... .+.+.+||+||+++ ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 445555677899999999999999999999988765 345566554432 3333 47899999999998 777888999
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
++|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++... +. ...+++++++||+
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~ 172 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-LA----TELACAFYECSAC 172 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTSEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH-HH----HHhCCeEEEECCC
Confidence 99999999999999999999888877766444468999999999998753 22222211 11 1124579999999
Q ss_pred CCC-CHHHHHHHHHHHhhc
Q 030187 162 SGE-GLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~-~v~~~~~~l~~~l~~ 179 (181)
+|. |++++|++|.+.+.+
T Consensus 173 ~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 173 TGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TCTTCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 999 999999999998764
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=187.98 Aligned_cols=165 Identities=19% Similarity=0.272 Sum_probs=127.9
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEcC--EEEEEEEcCCCCCccccccccccCc
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
......+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+ ..+...+ +.+.+||+||++++...+..+++++
T Consensus 7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 34455677999999999999999999999887643 345555443 2333433 6899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCC
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (181)
|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g 161 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTR 161 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCC
Confidence 9999999999999999999988887776555689999999999987532 222322221 123457999999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 030187 164 EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~ 179 (181)
.|++++|++|.+.+.+
T Consensus 162 ~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 162 ANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=185.15 Aligned_cols=160 Identities=20% Similarity=0.377 Sum_probs=125.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+..++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45689999999999999999999988754 3445555443 3445544 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... .+... +. ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-FA----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCcEEEEeCCCCCCHH
Confidence 9999999999999988876664432 357899999999998764322 22211 11 1123468999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=2.6e-31 Score=180.88 Aligned_cols=159 Identities=21% Similarity=0.366 Sum_probs=124.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||++++.+..+. ...++.+..+. .+... ...+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999988754 34566665543 33333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++.++.....|+..+.. ...+..|+++|+||+|+.+... .++... +. ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKD-YA----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHH-HH----HHcCCEEEEEeCCCCcCHH
Confidence 99999999999988877766654 2336899999999999975322 222221 11 1224579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 56
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1.4e-30 Score=184.03 Aligned_cols=164 Identities=25% Similarity=0.324 Sum_probs=121.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEc---CEEEEEEEcCCCCCccc-cccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NISFTVWDVGGQDKIRP-LWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i 89 (181)
+++.++|+++|++|+|||||+++|.++.+....++.......+... .+.+.+|||||++++.. .+..+++++|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999999988776666666666666665 68999999999999988 7888899999999
Q ss_pred EEEECCCcc-cHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----------------------
Q 030187 90 FVVDSNDRD-RVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------- 144 (181)
Q Consensus 90 lv~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------------------- 144 (181)
+|+|+++.+ ++.....+|...+.. ....++|+++|+||+|+........+.+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998753 466677777666543 1235789999999999987654433322111
Q ss_pred -CCccc---------C--cceEEEEecccCC------CCHHHHHHHHHHHh
Q 030187 145 -LHSLR---------Q--RHWYIQSTCATSG------EGLYEGLDWLSNNI 177 (181)
Q Consensus 145 -~~~~~---------~--~~~~~~~~Sa~~~------~~v~~~~~~l~~~l 177 (181)
..... . .+++|++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00000 1 1788999999999 99999999998764
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=1.2e-30 Score=179.13 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=118.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+.+||+++|++|+|||||++++.++.+....||++..+. .+... .+.+++||++|+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 4679999999999999999999999888766777765442 23333 47899999999987 4577889999999
Q ss_pred EECCCcccHHHHHHHHHHH--hcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 92 VDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPN----AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
||+++++++..+..|+..+ ......+++|+++|+||+|+.. ....++....... ..+++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccCC
Confidence 9999999999998864333 2223336899999999999842 1222222221110 1246899999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++|++|.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=3.7e-31 Score=185.90 Aligned_cols=159 Identities=20% Similarity=0.375 Sum_probs=125.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...++.+..+ ..+... .+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45689999999999999999999988765 3445655444 344444 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKE-FA----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999988877665432 3579999999999997632 2222221 11 1123468999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=184.97 Aligned_cols=160 Identities=19% Similarity=0.325 Sum_probs=125.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||+++|.+..+. ...+|.+..+.. +.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 34689999999999999999999988765 345566655432 333 3578999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888887766543 3579999999999987532 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 60
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=2.4e-31 Score=184.85 Aligned_cols=160 Identities=21% Similarity=0.343 Sum_probs=123.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCcccee--EEEEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||+++|.+..+.. ..+|.+.+ ...+... .+.+++||+||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 356899999999999999999999887643 34454433 3344444 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEA-FA----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877765432 3589999999999996532 2222221 11 1234579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 61
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=5.5e-32 Score=183.52 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=124.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+... ...+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999877643 334444332 233333 36699999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
+|+++++++.....|+..+.......+.|+++|+||+|+.+... .++... +. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-LA----EEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-HH----HHhCCCEEEecCCCCcCHHHH
Confidence 99999999999999988887765556899999999999865322 222211 11 112346899999999999999
Q ss_pred HHHHHHHhhc
Q 030187 170 LDWLSNNIAN 179 (181)
Q Consensus 170 ~~~l~~~l~~ 179 (181)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 62
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=2.4e-31 Score=183.81 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=124.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+. ...++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999988765 3445555443 3344444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+... ....+.... ....+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999888876654432 258999999999998643 222222211 11234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=3.6e-31 Score=185.50 Aligned_cols=159 Identities=18% Similarity=0.372 Sum_probs=124.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 34689999999999999999999988764 34566665543 33333 478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQ-LA----DHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHH-HH----HHCCCeEEEEECCCCCCHH
Confidence 999999999999988887776543 23578999999999997642 2222211 11 1123479999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 64
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1e-31 Score=186.27 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=119.4
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
...+.+||+++|++|+|||||++++.++.+. ...+|++..+. .+.. ..+.+++||++|+++++.. ..+++++|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 3456799999999999999999999988765 34566665542 2223 3478999999999998875 6788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecc-cCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCA-TSG 163 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 163 (181)
++|||++++++++.+..|+..+..... ..+.|+++|+||+|+.+. ...++..+.. ...+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcc
Confidence 999999999999999988877665321 257899999999998643 2222221111 112357999999 899
Q ss_pred CCHHHHHHHHHHHhhcc
Q 030187 164 EGLYEGLDWLSNNIANK 180 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~~~ 180 (181)
.|++++|+.|.+.+.++
T Consensus 171 ~gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 171 EHVQHVFHEAVREARRE 187 (187)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 99999999999988653
No 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=1.5e-30 Score=182.70 Aligned_cols=162 Identities=17% Similarity=0.250 Sum_probs=124.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
.+..++|+++|++|+|||||+++|.+..+. ...+|.+.+... +... .+.+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 456799999999999999999999988754 345566554433 3333 37899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+..... .++...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999999998888877665432 124789999999999975432 222222111 0234568999999999
Q ss_pred CHHHHHHHHHHHhhc
Q 030187 165 GLYEGLDWLSNNIAN 179 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~ 179 (181)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 66
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=1.8e-31 Score=184.31 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=126.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4567999999999999999999999887643 3445544432 23333 368999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||+++++++.....|+..+.......++|+++|+||+|+.+. ...++..... +..+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence 99999999999999988888777655468999999999998653 2223332222 1234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 170 ~l~~~l~~~i~~ 181 (187)
T 2a9k_A 170 KVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.4e-32 Score=189.18 Aligned_cols=160 Identities=19% Similarity=0.384 Sum_probs=124.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. ...++.+.+.. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35689999999999999999999987754 33344443332 3332 5689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQL-LA----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCeEEEEECCCCCCHH
Confidence 999999999999988877666543 33589999999999986532 2222211 11 1123579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 68
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=1.8e-31 Score=185.18 Aligned_cols=164 Identities=21% Similarity=0.351 Sum_probs=122.4
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCcc-ccccccccC
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIR-PLWRHYFQN 84 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~-~~~~~~~~~ 84 (181)
..+.++.++|+++|++|+|||||+++|.++.+. ...++.+.++ ..+...+ +.+.+||+||++++. ..+..++++
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 345567899999999999999999999988765 3455555443 3444443 789999999999998 788999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~ 168 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA----DTHSMPLFETSAKN 168 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCCEEECCSSS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HHH----HHcCCEEEEEeCCc
Confidence 99999999999999999999988887765545689999999999996532 222221 111 11234689999999
Q ss_pred C---CCHHHHHHHHHHHhhc
Q 030187 163 G---EGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~---~~v~~~~~~l~~~l~~ 179 (181)
| .|++++|++|.+.+.+
T Consensus 169 ~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGGGSCHHHHHHHHC-----
T ss_pred CCcccCHHHHHHHHHHHHhh
Confidence 9 9999999999887754
No 69
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3e-31 Score=187.09 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=118.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--cccccCcccee--EEEEEEc--CEEEEEEEcCCCCC-ccccccccccCccE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ 87 (181)
...+||+++|++|+|||||+++|.+.. +....++++.+ ...+... .+.+.+|||+|++. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999998643 33333344433 2334444 36788999999887 55566778899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++|+.+..|+..+......+++|+++|+||+|+.+. ...++. ..+ +...+++|++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~----a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHH----HHHcCCEEEEEeCCCCCC
Confidence 9999999999999999988877765434457999999999998643 222211 111 112345799999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
|+++|++|.+.+..
T Consensus 190 v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 190 VKELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 70
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=8e-32 Score=190.74 Aligned_cols=160 Identities=21% Similarity=0.428 Sum_probs=124.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE--EEEEc------------CEEEEEEEcCCCCCcccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK------------NISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~~~~~~~~~ 79 (181)
++.++|+++|++|+|||||+++|.+..+. ...+|++..+. .+... .+.+.+||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45689999999999999999999987764 33455554432 23222 57899999999999999999
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++++|++++|||+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 9999999999999999999999998888776555444689999999999987532 222222111 112346899
Q ss_pred ecccCCCCHHHHHHHHHHHhhc
Q 030187 158 TCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+||++|.|++++|++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 71
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=3.6e-30 Score=180.13 Aligned_cols=158 Identities=21% Similarity=0.374 Sum_probs=123.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE--EEEcC-------------------------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN------------------------------- 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~------------------------------- 60 (181)
+..++|+++|++|+|||||+++|.+..+. ...+|++..+.. +...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46799999999999999999999988764 344565544432 33222
Q ss_pred --------EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 61 --------ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
..+.+||+||++++...+..+++++|++++|+|++++.++..+..|+..+... ...|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999999999999999999999999999999998888777654 2499999999999432
Q ss_pred C-CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 133 A-MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 133 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
. ...+++.+... ..+++++++||++|.|+++++++|.+.+.++
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2 23333332221 1345799999999999999999999988754
No 72
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=7e-31 Score=181.50 Aligned_cols=157 Identities=16% Similarity=0.227 Sum_probs=120.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
...++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 467999999999999999999999887653 4566655442 2222 34789999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhH---HHhhhCCCcccCcc
Q 030187 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAE---ITDKLGLHSLRQRH 152 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~~---~~~~~~~~~~~~~~ 152 (181)
|||+++++++..+. .|+..+.. . .++.|+++|+||+|+.+. ...++ +.+.++ .
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~-~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 155 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQE-F-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 155 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH-H-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHH-H-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------C
Confidence 99999999999984 45444432 2 257999999999998742 11111 122221 1
Q ss_pred eEEEEeccc-CCCCHHHHHHHHHHHhhcc
Q 030187 153 WYIQSTCAT-SGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 153 ~~~~~~Sa~-~~~~v~~~~~~l~~~l~~~ 180 (181)
.+++++||+ ++.|++++|+.+.+.+.+|
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 479999999 6899999999999988765
No 73
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=2.6e-31 Score=182.30 Aligned_cols=159 Identities=18% Similarity=0.371 Sum_probs=124.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+.++|+++|++|+|||||++++.+..+. ...++.+.+. ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999987754 3455655444 3344443 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999888887765532 25799999999999865322 22222111 1224579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
+++++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=2.6e-30 Score=175.00 Aligned_cols=161 Identities=19% Similarity=0.294 Sum_probs=123.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+... .+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 45899999999999999999999887643 3444443332 23333 46789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
+|+++++++.....|+..+.......+.|+++++||+|+.......+....+. +..+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999988887766554445799999999999876432222211111 11234689999999999999999
Q ss_pred HHHHHhhcc
Q 030187 172 WLSNNIANK 180 (181)
Q Consensus 172 ~l~~~l~~~ 180 (181)
+|.+.+.++
T Consensus 158 ~l~~~~~~~ 166 (166)
T 2ce2_X 158 TLVREIRQH 166 (166)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999988653
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=6.3e-31 Score=186.25 Aligned_cols=161 Identities=21% Similarity=0.282 Sum_probs=123.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE--c--C-EEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY--K--N-ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~-~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+..+||+++|++|+|||||+++|.++.+. ...+|.+........ . . +.+.+||+||++++...+..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 346799999999999999999999987764 335566655544433 1 2 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+....+. ...+++++++||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL----KGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT----TTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH----HHcCCcEEEEecCCCCCH
Confidence 999999999999999887776665432 2468999999999987642 1122222222 224567999999999999
Q ss_pred HHHHHHHHHHhhc
Q 030187 167 YEGLDWLSNNIAN 179 (181)
Q Consensus 167 ~~~~~~l~~~l~~ 179 (181)
+++|++|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (218)
T 4djt_A 163 GLPFLHLARIFTG 175 (218)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=5.7e-31 Score=181.26 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=110.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.++.++|+++|++|+|||||++++.++.+. ...+|++..+. .++...+.+++||+||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 356799999999999999999999987754 33445443221 23334577889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCcccCcce-EEE
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRQRHW-YIQ 156 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 156 (181)
+|+|++++++++.+...|...+.... ++.|+++|+||+|+.+... .++... + ....+. +++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~ 158 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-L----KKLIGAPAYI 158 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-H----HHHHTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-H----HHHcCCCEEE
Confidence 99999999999998843434333322 4789999999999865321 111111 1 111232 789
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||++|.|++++|++|.+.+.+
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 77
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=183.69 Aligned_cols=163 Identities=20% Similarity=0.339 Sum_probs=121.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
....++|+++|++|+|||||+++|.+..+. ...++.+.+. ..+...+ +.+.+||+||++++...+..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 446689999999999999999999988764 3445555443 3344443 7899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCH
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (181)
++|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.. ..++... +... ..+.+++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~~~---~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEK-FAQQ---ITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHT---STTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHH-HHHh---cCCCeEEEEeCCCCCCH
Confidence 999999999999988877655433 333579999999999986532 2222221 1111 12457999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 030187 167 YEGLDWLSNNIANKA 181 (181)
Q Consensus 167 ~~~~~~l~~~l~~~~ 181 (181)
+++|++|.+.+.++.
T Consensus 178 ~~l~~~l~~~i~~~~ 192 (192)
T 2il1_A 178 DEIFLKLVDDILKKM 192 (192)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987763
No 78
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-31 Score=186.48 Aligned_cols=160 Identities=21% Similarity=0.358 Sum_probs=120.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+. ...+|.+..+ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45689999999999999999999988765 3445555433 3455554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877765432 3578999999999986532 222222111 1234579999999999999
Q ss_pred HHHHHHHHHhhcc
Q 030187 168 EGLDWLSNNIANK 180 (181)
Q Consensus 168 ~~~~~l~~~l~~~ 180 (181)
++|++|.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 79
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6e-30 Score=178.10 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=121.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3466899999999999999999999887653 4556554432 33333 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce-
Q 030187 90 FVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW- 153 (181)
Q Consensus 90 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~- 153 (181)
+|||+++++++..+. .|+..+... .++.|+++|+||+|+.+.. ..++... + .+..+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~ 167 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-L----AKEIGAC 167 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-H----HHHcCCc
Confidence 999999999999988 455444432 2479999999999997531 1111111 0 011122
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++++||++|.|++++|++|.+.+..
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999998764
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=186.03 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=118.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCcccee--EEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
++.++|+++|++|+|||||+++|.+..+. ...+|.+.. ...+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35699999999999999999999988764 334555533 33444444 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999999888877654322 579999999999986432 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-31 Score=181.16 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=121.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+.++|+++|++|+|||||++++.++.+. ...+|.+..... +.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999987764 344555544432 222 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|++++++++....|+..+.... ..++.|+++|+||+|+..... ..+.. .+ ....+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-AL----ARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH-HH----HHHhCCeEEEecCCCCcCHHH
Confidence 99999999988888876665432 225789999999999865422 11211 11 112345799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
++++|.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987643
No 82
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.8e-30 Score=181.45 Aligned_cols=162 Identities=22% Similarity=0.393 Sum_probs=122.9
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|+|||||+++|.+..+. ...++++..+ ..+...+ +.+.+||+||++++...+..+++++|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999988764 3445555443 4455555 789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.......+....+. ...+++++++||++|.|++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHTCCEEECBTTTTBSSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHH
Confidence 999999999999988888777665432 24789999999999954322111111111 1123468999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~~~~ 182 (213)
T 3cph_A 171 EIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 83
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=3.5e-30 Score=177.08 Aligned_cols=162 Identities=14% Similarity=0.245 Sum_probs=112.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEc---CEEEEEEEcCCCCCccccccccccCccE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.+..++|+++|++|+|||||++++.+..+. ...++.+.+. ..+... .+.+.+||+||++++...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 456799999999999999999999988754 3445554333 333333 4789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
+++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.... ..++...... ...+.+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999999988877765532 22578999999999985431 2222222111 0124468999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+|.|++++|++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 84
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.2e-30 Score=179.30 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=119.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+..++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4567899999999999999999999887653 3455554432 23343 378999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------ccCcce-EEEEec
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------LRQRHW-YIQSTC 159 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~S 159 (181)
+|||+++++++......|...+.... ++.|+++|+||+|+.......+......... ....+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998554444444322 5799999999999875422211111111000 011223 789999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|++|.|+++++++|.+.+.++
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987643
No 85
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.8e-30 Score=180.73 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=117.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEE--EcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...++.+||+++|++|+|||||++++..+.+. ...+|.+..+. .+. ...+.+.+||+||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 34467899999999999999999999987765 33445443322 222 244778899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cccCcc-eEEEE
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRQRH-WYIQS 157 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~ 157 (181)
+++|||++++.+++.....|...+.... ++.|+++|+||+|+.......+........ ..+..+ .++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 9999999999999999844444444332 579999999999987642211111111100 001112 36999
Q ss_pred ecccCCCCHHHHHHHHHHHh
Q 030187 158 TCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l 177 (181)
+||++|.|++++|++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 86
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=5.3e-30 Score=177.75 Aligned_cols=164 Identities=18% Similarity=0.279 Sum_probs=113.4
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCcc
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
+.+..+.++|+++|++|+|||||+++|.+..+.. ..+|.+..+. .+... .+.+.+||+||++++...+..+++.+|
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3445677999999999999999999999877543 3344443332 23333 367999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.... ..++..+.. +..+++++++||++|.|
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQG 169 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 999999999999999988887776554433578999999999987632 222222211 11234689999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
+++++++|.+.+.+
T Consensus 170 i~~l~~~l~~~~~~ 183 (190)
T 3con_A 170 VEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 87
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.3e-30 Score=181.90 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=114.7
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccc----eeEEEEE-EcCEEEEEEEcCCCCCccccc---ccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVE-YKNISFTVWDVGGQDKIRPLW---RHYFQ 83 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~ 83 (181)
...++.+||+++|++|+|||||++++.+........+.+ .....+. ...+.+++||++|+++|.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 456678999999999999999999887754332221111 1111222 345899999999999988776 89999
Q ss_pred CccEEEEEEECCCc--ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHh----hhCCCcccCcce
Q 030187 84 NTQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITD----KLGLHSLRQRHW 153 (181)
Q Consensus 84 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~~~ 153 (181)
++|++++|||++++ +++..+..|+..... ..++.|+++|+||+|+.+... ...+.. .+........++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 566666666666532 225899999999999875321 122222 222222225578
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhh
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+|++|||++ .|++++|+.+++.+.
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred ceEEEEech-hhHHHHHHHHHHHhC
Confidence 899999999 999999999998763
No 88
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.4e-32 Score=188.11 Aligned_cols=157 Identities=24% Similarity=0.433 Sum_probs=117.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccc--eeEEEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||+++|.+..+.. ..++.+ .....+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 356899999999999999999999877542 234433 4444455554 78999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEecccCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (181)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..+.+...+ +++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999999998887776543 33579999999999986532 222333333 3468899999999
Q ss_pred CHHHHHHHHHHHhhcc
Q 030187 165 GLYEGLDWLSNNIANK 180 (181)
Q Consensus 165 ~v~~~~~~l~~~l~~~ 180 (181)
|++++|++|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988765
No 89
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.8e-30 Score=183.22 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=118.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
...++|+++|++|+|||||++++.++.+. ...+|++..+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46699999999999999999999988765 34556654432 2333 34799999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------CHhH---HHhhhCCCcccCcceEEE
Q 030187 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM----------NAAE---ITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~----------~~~~---~~~~~~~~~~~~~~~~~~ 156 (181)
|||+++++++..+. .|+..+ .... ++.|+++|+||+|+.+.. ..++ +...++. .+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~ 157 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPEL-RRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-------AAYI 157 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHH-HHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-------SEEE
T ss_pred EEECCCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-------ceEE
Confidence 99999999999987 454444 3322 479999999999986531 1111 2222221 2789
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||++|.|++++|++|.+.+.+
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 158 ECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EccCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 90
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=8.5e-30 Score=178.27 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=115.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEcC--EEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
...+.++|+++|++|+|||||++++.+..+. ...+|.+..+. .+...+ +.+.+||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 4567899999999999999999999988764 34456554432 333443 6788999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcccCcce
Q 030187 89 IFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (181)
++|||+++++++..+. .|+..+.... ++.|+++|+||+|+.... ..++... + ....+.
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~ 168 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-L----AEEIKA 168 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-H----HHhcCC
Confidence 9999999999999987 4554443322 479999999999986421 1111111 1 011223
Q ss_pred -EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 -YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 -~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999987753
No 91
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2.1e-30 Score=184.03 Aligned_cols=160 Identities=21% Similarity=0.358 Sum_probs=127.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEE----cCEEEEEEEcCCCCCccccccccccCccE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|+|||||++++..+.+. ...++.+.+...... ..+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 4456799999999999999999997766543 345666665544332 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+++|||++++.++..+..|+..+.... ++.|+++|+||+|+.+.....+ ........+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988887776642 4789999999999976432221 111222345679999999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++|++|.+.+..
T Consensus 164 ~l~~~l~~~l~~ 175 (221)
T 3gj0_A 164 KPFLWLARKLIG 175 (221)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 92
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=6.1e-30 Score=179.86 Aligned_cols=157 Identities=16% Similarity=0.226 Sum_probs=120.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
+..+||+++|++|+|||||+++|.+..+.. ..+|.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 456999999999999999999999987653 3566655442 2222 34889999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHh---HHHhhhCCCcccCcc
Q 030187 91 VVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAA---EITDKLGLHSLRQRH 152 (181)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~ 152 (181)
|||+++++++..+. .|+..+... .++.|+++|+||+|+.+. ...+ ++.+.++ .
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 176 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 176 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------C
Confidence 99999999999984 554444332 257999999999998642 1111 1122221 1
Q ss_pred eEEEEeccc-CCCCHHHHHHHHHHHhhcc
Q 030187 153 WYIQSTCAT-SGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 153 ~~~~~~Sa~-~~~~v~~~~~~l~~~l~~~ 180 (181)
.+|++|||+ ++.|++++|+.|.+.+.+|
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 479999999 6899999999999988764
No 93
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=1.3e-29 Score=177.55 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=121.7
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeE-EEEEEc--CEEEEEEEcCCCCCccccccccccCccEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 88 (181)
.+...+||+++|++|+|||||++++.+..+.. ..+|.+..+ ..+... .+.+.+||+||++++...+..+++++|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 34567899999999999999999999887643 345555443 223343 46899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEe
Q 030187 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQST 158 (181)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~ 158 (181)
++|||+++++++......|...+.... ++.|+++|+||+|+.......+...... ...++..+. +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998654545444322 4799999999999876421111111000 000111223 78999
Q ss_pred cccCCCCHHHHHHHHHHHhhc
Q 030187 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
||++|.|+++++++|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
No 94
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.5e-30 Score=179.73 Aligned_cols=163 Identities=15% Similarity=0.215 Sum_probs=123.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEE-EEE--cCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
....++|+++|++|+|||||+++|.++.+. ...+|.+..+.. +.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 356799999999999999999999987764 344555544332 222 3468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|||+++++++.....|+..+..... .++.|+++|+||+|+.......+....+. ...+++++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA----QEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH----HHHTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH----HHhCCeEEEEecCCCCCHHH
Confidence 99999999999888887765544221 24789999999999976432222111111 12235799999999999999
Q ss_pred HHHHHHHHhhcc
Q 030187 169 GLDWLSNNIANK 180 (181)
Q Consensus 169 ~~~~l~~~l~~~ 180 (181)
++++|.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987643
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=7.5e-30 Score=176.10 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=119.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
++.++|+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||+||++++...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 467999999999999999999999877643 3455544332 2333 34778899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEecc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~Sa 160 (181)
|||++++.++......|...+.... ++.|+++|+||+|+.+.....+...... ....+..+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 9999999999998843433333322 3789999999999865421111111000 000111233 7999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++|++|.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 96
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=8.4e-30 Score=180.18 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=102.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE-EEEE--cCEEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
.+.++|+++|++|+|||||+++|.++.+.. ..+|....+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999887643 3455544332 2333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcccCcce-EEEEecc
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------LHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~Sa 160 (181)
|||+++++++..+...|...+.... ++.|+++|+||+|+.......+...... ....+..+. +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999998743333333222 5789999999999876422111110000 001111233 7999999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++|++|.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 97
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=2.4e-31 Score=186.74 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=93.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccce--eEEEEEEc----CEEEEEEEcCCCCCccccccccccCc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGF--NVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~--~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (181)
+..++|+++|++|+|||||+++|.+. .+. ...+|++. ....+... .+.+.+||+||++++...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46689999999999999999999988 554 44556653 33345444 57899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCC-C--CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPN-A--MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
|++++|||+++++++..+..|+..+..... ..+.|+++|+||+|+.. . ...++..... +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999999988877765433 25799999999999976 2 2222222211 112357999999
Q ss_pred cC-CCCHHHHHHHHHHHhhc
Q 030187 161 TS-GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~-~~~v~~~~~~l~~~l~~ 179 (181)
++ |.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987754
No 98
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.3e-30 Score=179.44 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=113.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--cccccCcccee--EEEEEEc--CEEEEEEEcCCCCC-ccccccccccCccE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDK-IRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ 87 (181)
+..+||+++|++|+|||||+++|.+.. +....++++.+ ...+... .+.+.+||++|.+. ++.....+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999998633 33333333333 2334444 36778999999876 55567788899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
+++|||++++++|+....|+..+......++.|+++|+||+|+... ...++. ..+ +...+++|++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 9999999999999999888776655333357899999999998642 122211 111 111234789999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
|+++|+.+.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 99
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=3.7e-30 Score=190.21 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=117.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEEEcCEEEEEEEcCCCCCccc---cccccccCccEEEEE
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~ilv 91 (181)
||+++|+.|+|||||++++.++... ...||++.....+. ..+++++|||+|+++|+. .++.++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 6899999999999999988766443 25678888876653 458999999999999975 358899999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCccc----CcceEEEEeccc
Q 030187 92 VDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLR----QRHWYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 161 (181)
||++++ +.+...||.+.+.. ...+++|+++++||+|+..... .+++....+...++ +.+++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44445555443321 1236899999999999976432 12343333322232 367899999999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
+ .+|.++|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999988764
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=4.1e-30 Score=177.75 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=114.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC--Ccc-cccCccceeEEEEE-------EcCEEEEEEEcCCCCCccccccccccCcc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVETVE-------YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~~~-------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (181)
.+||+++|++|+|||||++++.+. .+. ...+|++..+.... ...+.+.+||++|++++...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 333 34667776654432 24678999999999999999999999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcccCcceEEEEeccc
Q 030187 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
++++|||++++ .++..+..|+..+.... ++.|+++|+||+|+.+..... +....+....--....+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 57888888887765432 478999999999987532211 111222211000111248999999
Q ss_pred CCC-CHHHHHHHHHHHhhc
Q 030187 162 SGE-GLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~-~v~~~~~~l~~~l~~ 179 (181)
+|. |++++++.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999887653
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=3.8e-28 Score=166.50 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=118.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
..++.++|+++|++|+|||||+++|.+..+.. ..+ +.......+...+..+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35678999999999999999999999877643 222 334444556777889999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cccCc--ceEEEEecccCCCC
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLRQR--HWYIQSTCATSGEG 165 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~~ 165 (181)
+|+|++++...+.. ..+..... .+.|+++|+||+|+.+. ..+++...+... ..... .++++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999875433322 22222222 47899999999999764 223333322211 11222 36899999999999
Q ss_pred HHHHHHHHHHHhh
Q 030187 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~l~~~l~ 178 (181)
+++++++|.+.+.
T Consensus 158 v~~l~~~l~~~~~ 170 (178)
T 2lkc_A 158 LDHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998765
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=6.1e-31 Score=184.60 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=121.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccceeEE---EEEEcCEEEEEEEcCCCCCccccccccccCccE
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (181)
...++.++|+++|++|+|||||++++.++.+.. ..+|.+..+. .++...+.+++||+||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 344678999999999999999999999877643 2334332221 233345788899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCcccCcce-EEEE
Q 030187 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRQRHW-YIQS 157 (181)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~ 157 (181)
+++|||+++++++......|...+.... ++.|+++|+||+|+.+..... .+........++..+. ++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999999988744444444322 378999999999987542111 1111222222333444 7899
Q ss_pred ecccCCCCHHHHHHHHHHHh
Q 030187 158 TCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l 177 (181)
+||++|.|++++|+.|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998765
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.9e-27 Score=161.55 Aligned_cols=148 Identities=22% Similarity=0.292 Sum_probs=108.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc------ccccccc--C
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~ 84 (181)
+.++|+++|++|+|||||+++|.+..+. ...| |.......+...+..+.+|||||++++.. ....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4589999999999999999999986542 2233 33344445666788999999999988753 3355554 8
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|+|+++.+ ....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++||
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 99999999998643 34445555543 37899999999997532 12334444443 35899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++|++|.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998774
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.2e-27 Score=170.65 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=109.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccc-c--cCccceeEEEEEEcCEEEEEEEcCCCCCc---------cccccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 82 (181)
.+.++|+++|++|+|||||+++|.+..+.. . ..|.......+...+..+.+|||||+... ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 567999999999999999999999887642 1 12444555556667899999999998421 11123446
Q ss_pred cCccEEEEEEECCCcccHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcc--eEEEEe
Q 030187 83 QNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH--WYIQST 158 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (181)
..+|++++|+|++++.++.. ...++..+... .++.|+++|+||+|+.+...................+ ++++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 78999999999998877642 23444444332 2478999999999987643221110000001111122 689999
Q ss_pred cccCCCCHHHHHHHHHHHhhc
Q 030187 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
||++|.|++++|++|.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=6.7e-28 Score=178.98 Aligned_cols=162 Identities=21% Similarity=0.232 Sum_probs=121.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--cc--cccCccceeEEEEEE-cCEEEEEEEcCCCCCc-----cccccccccCc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 85 (181)
..+||+++|++|+|||||++++.++. +. ...+|++..+..+.. +++.+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 35899999999999999999998873 32 456788888877775 5789999999999988 77888899999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCcccCc---ceEEEEe
Q 030187 86 QGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQR---HWYIQST 158 (181)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (181)
|++++|||+++++++..+..|...+... ...+++|+++|+||+|+.+.....+ ............. ++++++|
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999999887654332221 1125799999999999876221110 1111111111122 3689999
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++ .|+.++|..++..+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 899999999887664
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=1.4e-27 Score=163.44 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=109.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
+...+|+++|++|+|||||+++|.+.... ...+ |.+.....+...+..+.+|||||+.++... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999987532 2222 334444556677788999999998764321 12357
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+..... ......+.+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999998888763 3555444332 225789999999999854211 11122356899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|++++|++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998764
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=5.6e-28 Score=168.09 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=107.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcCEEEEEEEcCC----------CCCccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGG----------QDKIRPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~G----------~~~~~~~~ 78 (181)
.+..+.++|+++|++|+|||||+++|.+..+. ...++.+.+. ..+... ..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 44557799999999999999999999988632 2333333221 122222 3699999999 56666667
Q ss_pred cccccCc---cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcccCc
Q 030187 79 RHYFQNT---QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSLRQR 151 (181)
Q Consensus 79 ~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 151 (181)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+....... ++.+.++. ..
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~----~~ 167 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI----DP 167 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC----CT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc----cC
Confidence 7777766 9999999999887776542 1222222 578999999999998754332 22222332 24
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+.+++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999998775
No 108
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=1.6e-27 Score=160.76 Aligned_cols=147 Identities=19% Similarity=0.234 Sum_probs=105.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCc-------cccccccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d 86 (181)
.+|+++|++|+|||||++++.+..+. ...+ +.......+...+..+.+||+||+..+ ...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987643 2222 334455566677889999999998873 344566789999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (181)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+.. ++.. .+. ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~-~~~-----~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG-PLY-----GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG-GGG-----GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhHH-HHH-----hCCCCCeEEEecccCCC
Confidence 999999998764432 2334444433 478999999999987541 1111 111 1223 588999999999
Q ss_pred HHHHHHHHHHHh
Q 030187 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~l~~~l 177 (181)
++++|++|.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998876
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=5.9e-27 Score=175.34 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=120.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEE-EEEEc--CEEEEEEEcCCCCCccccccccccCccEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
.+..++|+++|++|+|||||++++.++.+. ...+|++..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 356699999999999999999999987764 33445544332 23333 366779999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcccCcce-EEEEec
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL---------HSLRQRHW-YIQSTC 159 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~S 159 (181)
+|||++++.++..+...|...+.... +++|+++|+||+|+.+.....+....... ...+..+. +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999999998744434333322 38999999999998653111111111000 00111233 799999
Q ss_pred ccCCCCHHHHHHHHHHHhhcc
Q 030187 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~~~ 180 (181)
|++|.|++++|+.|.+.+.++
T Consensus 311 a~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999988754
No 110
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.6e-28 Score=174.75 Aligned_cols=161 Identities=12% Similarity=0.135 Sum_probs=113.9
Q ss_pred ccCcceEEEEcCC---------CCChHHHHhhhhcC---Ccc-cccCcc-ceeE------------------EEEEEcCE
Q 030187 14 AKKEMRILMVGLD---------AAGKTTILYKLKLG---EIV-TTIPTI-GFNV------------------ETVEYKNI 61 (181)
Q Consensus 14 ~~~~~~i~v~G~~---------~~GKssli~~l~~~---~~~-~~~~t~-~~~~------------------~~~~~~~~ 61 (181)
....+||+++|.+ |+|||||+++|.++ .+. ...+|+ +..+ ..++...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4466999999999 99999999999983 332 233332 2111 01334568
Q ss_pred EEEEEE-----------------------cCCCCCcccccccccc---------------------CccEEEEEEECCCc
Q 030187 62 SFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFVVDSNDR 97 (181)
Q Consensus 62 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~~~~ 97 (181)
.+++|| ++|++++...+..+++ ++|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 7788888888888887 79999999999998
Q ss_pred --ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 98 --DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 --~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++|+.+..|+..+.......++|+++|+||+|+......++... +.. ...+++++++||++|.|++++|++|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~---~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHT-FAL---SKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHH-HHH---TSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHH-HHH---hcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999998887776542335799999999999865322222211 111 012457999999999999999999998
Q ss_pred Hhh
Q 030187 176 NIA 178 (181)
Q Consensus 176 ~l~ 178 (181)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 111
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=9.4e-28 Score=166.74 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=109.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEE-EEEcCEEEEEEEcCC----------CCCccccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNISFTVWDVGG----------QDKIRPLWRH 80 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~~~~~ 80 (181)
.+....++|+++|++|+|||||+++|.+.......++.+.+... +...+..+.+||||| ++.+...+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 44556789999999999999999999988755444444433221 222245688999999 5556666666
Q ss_pred cccCc---cEEEEEEECCCcccHHHH--HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030187 81 YFQNT---QGLIFVVDSNDRDRVVEA--RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 81 ~~~~~---d~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
+++.+ |++++|+|+++..+.... ..|+.. .+.|+++|+||+|+.+........+...........+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 66665 999999999765443322 223322 268999999999997654333322222111111123579
Q ss_pred EEecccCCCCHHHHHHHHHHHhhcc
Q 030187 156 QSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 156 ~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+++||++|.|++++|++|.+.+.++
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC--
T ss_pred EEEecCCCCCHHHHHHHHHHHhhcC
Confidence 9999999999999999999988653
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3e-26 Score=158.49 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=114.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcc------cccccccc-
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ- 83 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 83 (181)
..+.++|+++|++|+|||||+++|.+..+. ...+ |.......+...+..+.+|||||++++. ..+..+++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 346789999999999999999999986532 3333 3334455567778999999999998875 33455554
Q ss_pred -CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEe
Q 030187 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 84 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
.+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~ 148 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPL 148 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEEC
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEE
Confidence 4999999999864 5566666666554 47899999999997542 23344444443 358899
Q ss_pred cccCCCCHHHHHHHHHHHhhcc
Q 030187 159 CATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
||+++.|++++|+++.+.+..+
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC
T ss_pred EecCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999887653
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=5.8e-28 Score=167.24 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=112.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEEEcCEEEEEEEcCC-----------CCCccccccccccC-
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYFQN- 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~- 84 (181)
++|+++|++|+|||||++++.+..+. ...++.......+... .+.+||+|| ++.+...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999988754 2334444433344444 689999999 55666677777776
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHH---------HhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcce
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHR---------MLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (181)
++++++|+++.+..++......|.. +.......+.|+++|+||+|+.... ..+++.+.++... ...+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 7777777777777788776443322 1121122579999999999987643 2334455555421 11134
Q ss_pred EEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 154 ~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcch
Confidence 58899999999999999999998764
No 114
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=1.3e-26 Score=162.06 Aligned_cols=159 Identities=18% Similarity=0.342 Sum_probs=119.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 89 (181)
...++|+++|++|+|||||++++.+..+. ...+|.+... ..+...+ +.+.+||++|+++++..+..+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34689999999999999999999988754 3345555433 3444444 67889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEecccCCCCHH
Q 030187 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+|+++..++.....|+..+... ...+.|+++++||+|+.+.. ...+. ..+. ...++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a-~~l~----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEA-RAFA----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHH-HHHH----HHcCCeEEEEeCCCCCCHH
Confidence 999999988888887776654332 22578999999999986532 22222 1111 1234578899999999999
Q ss_pred HHHHHHHHHhhc
Q 030187 168 EGLDWLSNNIAN 179 (181)
Q Consensus 168 ~~~~~l~~~l~~ 179 (181)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.1e-25 Score=163.20 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=112.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccc------cccc--c
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------RHYF--Q 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~--~ 83 (181)
++.++|+++|++|+|||||+|+|.+.... ...| |.......+...+..+.+||+||+..+...+ ..++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999999987653 3333 4444555666778999999999998877532 4454 5
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEec
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
++|++++|+|+++.++. ..++.++.. .+.|+++++||+|+... ...+.+.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 89999999999876543 345555544 47999999999997542 23344555554 3689999
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 030187 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 a~~~~~v~~~~~~l~~~l~ 178 (181)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999988754
No 116
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=9.3e-27 Score=165.24 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=109.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc---ccccC--ccceeEEEEE-EcCEEEEEEEcCCCCC----------cc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI---VTTIP--TIGFNVETVE-YKNISFTVWDVGGQDK----------IR 75 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~--t~~~~~~~~~-~~~~~~~i~D~~G~~~----------~~ 75 (181)
.+..+.++|+++|++|+|||||+|+|.+... ....+ |.......+. ..+..+.+|||||... +.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 4455779999999999999999999998862 22222 3333343343 3457899999999533 34
Q ss_pred ccccccccC---ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH----hhhCCC--
Q 030187 76 PLWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT----DKLGLH-- 146 (181)
Q Consensus 76 ~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~----~~~~~~-- 146 (181)
..+..+++. +|++++|+|++++.+ .....+...+.. .+.|+++|+||+|+.......... +.+...
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 444555555 788999999986533 233333344443 578999999999987643322221 111110
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
.....+.+++++||++|.|+++++++|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 001245689999999999999999999998764
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=2.9e-25 Score=164.83 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=118.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccccc----CccceeEEEEEEc-CEEEEEEEcCCCCCcc----------ccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYK-NISFTVWDVGGQDKIR----------PLW 78 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~~~ 78 (181)
....-.|+++|.+|+|||||+|+|.+..+.... .|.......+... +..+.+|||||+.++. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 345678999999999999999999998764222 2333334455666 8999999999987655 456
Q ss_pred cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEE
Q 030187 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
..+++.+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+. +.....+....+.... ....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEE
Confidence 6778899999999999988888876665555443 478999999999987 4433333322221110 01236889
Q ss_pred ecccCCCCHHHHHHHHHHHhhc
Q 030187 158 TCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+||++|.|++++++.|.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988753
No 118
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=8.7e-26 Score=156.91 Aligned_cols=157 Identities=17% Similarity=0.328 Sum_probs=118.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeE--EEEEEcC--EEEEEEEcCCCCCccccccccccCccEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 90 (181)
..++|+++|++|+|||||++++.+..+. ...+|++..+ ..+...+ +.+++||++|++++...+..++++++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 4589999999999999999999988764 4556666544 3344444 567789999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
|+|.++..+++.+..|+..+... ...+.|+++++||+|+.+... ..+....+. ...++.++++||+++.|++++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~----~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999888888877776554322 225789999999999865321 111222221 123457889999999999999
Q ss_pred HHHHHHHh
Q 030187 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~l~~~l 177 (181)
++.|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=3.9e-25 Score=163.47 Aligned_cols=155 Identities=17% Similarity=0.095 Sum_probs=111.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc--ccC--ccceeEEEEEEcCEEEEEEEcCCCCC--------cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 83 (181)
+..+|+++|.+|+|||||+|+|.+.++.. ..+ |.......+...+..+.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999887642 222 22222333556789999999999876 3445567789
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccC
Q 030187 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
.+|++++|+|++++.+.. ..++.+.+.... ++.|+++|+||+|+..... ..+..+.+ . ...+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCC
Confidence 999999999998764443 455555554422 4789999999999875433 22333333 1 123688999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|++++++.|.+.+.+
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887643
No 120
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.93 E-value=6.7e-25 Score=162.93 Aligned_cols=135 Identities=24% Similarity=0.422 Sum_probs=109.5
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (181)
.||+|+....+..+++++++||++|+++++..|..++++++++|+|+|++ +.+++.+...++..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 46788888889999999999999999999999999999999999999654 67889999999999988777
Q ss_pred CCCCeEEEEEeCCCCCCC------------------CCHhHHHhh-----hCCCcccCcceEEEEecccCCCCHHHHHHH
Q 030187 116 LRDAVLLVFANKQDLPNA------------------MNAAEITDK-----LGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
..+.|+++++||+|+... ...++..+- ......+..++.+++|||+++.||+++|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 788999999999997531 222222221 112223346678899999999999999999
Q ss_pred HHHHhhcc
Q 030187 173 LSNNIANK 180 (181)
Q Consensus 173 l~~~l~~~ 180 (181)
+.+.+.++
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988754
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.3e-25 Score=164.15 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=109.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc----------ccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~~ 82 (181)
+.++|+++|++|+|||||+|+|.+.... ...+ |.......+...+..+.+|||||+.++... ...++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5689999999999999999999987643 2333 444445556667789999999999877632 22222
Q ss_pred --cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEE
Q 030187 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
+++|++++|+|+++.++...+..++.+ .++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 689999999999875544433333332 278999999999986432 3344444444 3689
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
++||++|.|++++++.|.+.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887653
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.4e-25 Score=161.17 Aligned_cols=144 Identities=16% Similarity=0.168 Sum_probs=107.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc----------cccccc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHYF-- 82 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~-- 82 (181)
.+|+++|++|+|||||+|+|.+.... ...| |.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999987642 3333 44455566777888999999999987764 345566
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEe
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++|++++|+|+++.++...+.. .+.. .+.|+++|+||+|+.... ....+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 88999999999987544433322 2222 378999999999976432 3334444444 368999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030187 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~ 176 (181)
||++|.|++++++.|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
No 123
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.93 E-value=2.4e-25 Score=167.38 Aligned_cols=133 Identities=26% Similarity=0.443 Sum_probs=107.4
Q ss_pred CccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCC
Q 030187 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (181)
+|+++....+..+++.+++||++|+++++..|..++++++++|+|+|+++ .+++.+...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 47777777888889999999999999999999999999999999999998 56799999999999887666
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCcc-cCcceEEEEecccCCCCHHHHHHHH
Q 030187 117 RDAVLLVFANKQDLPN-----------------AMNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
.+.|+++++||+|+.. ....++...... +... ...++.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999842 122233222111 1111 1356889999999999999999999
Q ss_pred HHHhhc
Q 030187 174 SNNIAN 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3e-25 Score=161.82 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=106.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-cccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcc------cccccccc--C
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--N 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~ 84 (181)
+.++|+++|++|+|||||+|+|.+.. +....| |.......+.. +..+.+|||||+.++. .....++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 35799999999999999999999865 333333 33333333333 6789999999998876 34455555 6
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|+|+++.++ ...|+.++.. .+.|+++++||+|+... ...+.+.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 999999999986543 3444444443 47899999999997532 23344444444 36899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++|+++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988654
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=2.3e-24 Score=157.38 Aligned_cols=150 Identities=22% Similarity=0.249 Sum_probs=113.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccc------cccccc--cC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 84 (181)
+.++|+++|++|+|||||+|+|.+.... ...+ |.......+...+..+.+||+||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4689999999999999999999987653 3333 44444556777888999999999988776 445555 68
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+|++++|+|+++. .....++.++... ...|+++++||+|+... .....+.+.++. +++++||
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV--------PVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS--------CEEECBG
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCC--------cEEEEEe
Confidence 9999999999764 3444555555543 23899999999996431 234555555553 5889999
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030187 161 TSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~~ 179 (181)
++|.|++++++.+.+.+..
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
No 126
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.92 E-value=1.7e-24 Score=163.31 Aligned_cols=132 Identities=26% Similarity=0.413 Sum_probs=98.6
Q ss_pred ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030187 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+++....+..+++.+++|||+|+++++..|..++++++++|+|+|+++ .+++.+...++..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 5666666778889999999999999999999999999999999999998 789999999999998876667
Q ss_pred CCeEEEEEeCCCCCC-----------------C-CCHhHHHhhh-----CCCccc-CcceEEEEecccCCCCHHHHHHHH
Q 030187 118 DAVLLVFANKQDLPN-----------------A-MNAAEITDKL-----GLHSLR-QRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 118 ~~piivv~nK~D~~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l 173 (181)
+.|+++++||+|+.. . ...++..... .+.... ..++.+++|||+++.||+++|+++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 899999999999852 1 2333333211 111111 346789999999999999999999
Q ss_pred HHHhhc
Q 030187 174 SNNIAN 179 (181)
Q Consensus 174 ~~~l~~ 179 (181)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2.6e-25 Score=172.32 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=111.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCC----------Ccccccc-c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWR-H 80 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~-~ 80 (181)
..++|+++|.+|+|||||+|+|.+.... ...+ |.+.....+...+..+++|||||+. .|..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753 2222 3333344566778889999999973 3333332 4
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++.+|++++|+|++++.+++.. .++..... .++|+++|+||+|+.+... .+++.+.+........+.+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 77889999999999998887775 34433332 5799999999999876533 22333222211111234579999
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 030187 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~ 178 (181)
||++|.|++++|+.+.+.+.
T Consensus 329 SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999988765
No 128
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=1.1e-25 Score=178.49 Aligned_cols=156 Identities=20% Similarity=0.308 Sum_probs=107.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-cccCccceeEEEEE------------EcCEEEEEEEcCCCCCccccccc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE------------YKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~~ 80 (181)
....+||+++|.+|+|||||++++.+..+. ...+|++.++.... ...+.+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 346699999999999999999999988764 44567777665431 12589999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEe
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|+|+++.+.. ..|+..+.... ++.|+++|+||+|+.... ..++...... ..+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 99999999999999765443 44444443321 368999999999997643 2233333222 223468999
Q ss_pred cccCCCCHHHHHHHHHHHhhc
Q 030187 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 159 Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
||++|.|++++++.|.+.+.+
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CC-----CTTHHHHHHHHHTC
T ss_pred ecCcccCHHHHHHHHHHHHhc
Confidence 999999999999999987754
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=3e-24 Score=167.22 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=97.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccc--------cccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------RHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 82 (181)
++.++|+++|++|+|||||+|+|.+... ....+ |.+.....+...+..+.+|||||..++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998753 23232 4444455677788999999999987765433 4478
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCcccCcceEEEEecc
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--ITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++|++++|+|++++.+++....+ ..++... .+.|+++|+||+|+........ +.+. . ..+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~-~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEI-RELKAAH--PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHH-HHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHH-HHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEEEE
Confidence 899999999999988877532221 1222211 2689999999999976543321 2111 0 135889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998775
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=2.1e-26 Score=162.93 Aligned_cols=118 Identities=25% Similarity=0.330 Sum_probs=95.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC----
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN---- 84 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~---- 84 (181)
...+.++|+++|++|+|||||+++|.+..+.. ..++....+ ....+.+||+||+++++..+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 35677999999999999999999999887543 233332222 56789999999999999988888887
Q ss_pred ccEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCC
Q 030187 85 TQGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 85 ~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~ 135 (181)
+|++++|+|++ +++++.....|+.+++... ...++|+++|+||+|+.....
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 8899999999988877643 225799999999999987654
No 131
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.91 E-value=1.4e-24 Score=161.79 Aligned_cols=134 Identities=26% Similarity=0.364 Sum_probs=107.5
Q ss_pred cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCC
Q 030187 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (181)
.+|+|+....+..+++.+++||++|+++++..|..++++++++|+|+|++ +.+++.+...|+..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 45778888888889999999999999999999999999999999999998 67899999999999988877
Q ss_pred CCCCeEEEEEeCCCCCCC-----------------CCHhHH----Hhhh-------CCCcccC-----------cceEEE
Q 030187 116 LRDAVLLVFANKQDLPNA-----------------MNAAEI----TDKL-------GLHSLRQ-----------RHWYIQ 156 (181)
Q Consensus 116 ~~~~piivv~nK~D~~~~-----------------~~~~~~----~~~~-------~~~~~~~-----------~~~~~~ 156 (181)
..+.|+++++||+|+... ...++. ...+ ....... +.+.++
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 788999999999998531 112222 1222 1111111 468899
Q ss_pred EecccCCCCHHHHHHHHHHHhhc
Q 030187 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
+|||++..||+++|+.+.+.|.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1.7e-24 Score=166.23 Aligned_cols=163 Identities=16% Similarity=0.086 Sum_probs=113.3
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccccc----Cccc--------------e-----eEEEEEEcCEEEEEEEcC
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIG--------------F-----NVETVEYKNISFTVWDVG 69 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~--------------~-----~~~~~~~~~~~~~i~D~~ 69 (181)
..+..++|+++|++++|||||+++|.+....... .+.+ . ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3567799999999999999999999874321100 0000 0 000001122689999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--CCc
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHS 147 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~--~~~ 147 (181)
|+++|...+..++..+|++++|+|+++..++.....++...... ...|+++++||+|+.+.....+..+.+. ...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876666666665543322 2358999999999986532222222111 111
Q ss_pred ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
....+++++++||++|.|++++++.|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1223567999999999999999999998764
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.9e-23 Score=158.07 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=115.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCccc---------cccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~ 82 (181)
...++|+++|++|+|||||+|+|.+.... . ...|.......+...+..+.+|||||...... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987642 1 23355555566666788999999999865321 112344
Q ss_pred cCccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 83 QNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++...... ..+.+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998776 6777777777665532 2789999999999876432222222111 12346889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|+|+++++++|.+.+.
T Consensus 318 ~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTBTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998775
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=5.9e-24 Score=165.68 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=113.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCC-Cccc--------cccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQD-KIRP--------LWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~~ 82 (181)
+.++|+++|.||+|||||+|+|.+.+. ....+ |.+.....+...+..+.+|||||.. ++.. ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 23223 5555556677788999999999987 6543 234567
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+++|++++|+|++++.+++... .+ +.+ .+.|+++|+||+|+......+++.+... .+.+++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 8999999999999888776532 22 332 3689999999999976544444443322 123588999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030187 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~ 178 (181)
|.|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998754
No 135
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=1.7e-24 Score=162.81 Aligned_cols=121 Identities=18% Similarity=0.343 Sum_probs=92.4
Q ss_pred cCEEEEEEEcCCCCCccccccccccCccEEEEEEECC----------CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
..+.+++|||+|+++++..|..++++++++|+|||++ +.+++.+...|+..+......++.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4589999999999999999999999999999999998 788999999999998887656789999999999
Q ss_pred CCCCC----CC-------------------HhHHHhhhCC-----------CcccCcceEEEEecccCCCCHHHHHHHHH
Q 030187 129 DLPNA----MN-------------------AAEITDKLGL-----------HSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 129 D~~~~----~~-------------------~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 174 (181)
|+... .. .++....... .......+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97431 00 1111110000 00012346678999999999999999999
Q ss_pred HHhhc
Q 030187 175 NNIAN 179 (181)
Q Consensus 175 ~~l~~ 179 (181)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=1.2e-24 Score=166.99 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=108.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEEEcCE-EEEEEEcCCCCCcccc-------ccc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPL-------WRH 80 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~~ 80 (181)
+....++|+++|++|+|||||+|+|.+..+. ....|.......+...+. .+.+|||||+.++... +..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4456789999999999999999999987753 222355555566666554 8999999999887655 344
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecc
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (181)
+++++|++++|+|++.. .....|+..+.. .++|+++|+||+|+...... +..+.+.. ..+++++++||
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEEC
Confidence 78899999999998322 223334444333 37899999999999876544 23333321 23457899999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
++|.|++++++.|.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999874
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=8.1e-24 Score=164.06 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=102.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCc---------cccccccccC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQN 84 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~ 84 (181)
.+|+++|.||+|||||+|+|.+.+.. ...| |.+..+..+.+.+..+++|||||.+.. ...+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999987643 2222 444456667778889999999997652 3345678899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEecccCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (181)
+|++++|+|+.++.+.. ..++.++++. .++|+++|+||+|+.... ..+....+.. .++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-----lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-----LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-----GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-----cCCCCEEEEeccCC
Confidence 99999999997654433 2333343332 368999999999975320 1111011111 112 3679999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030187 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~ 178 (181)
.|++++++.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999988775
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=2.6e-24 Score=166.68 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=100.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccccCccce----eEEEEEEcCEEEEEEEcCCCC--------CccccccccccC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQN 84 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 84 (181)
..+|+++|.+|+|||||+|+|.+.......++.+. .+..+.+.+..+.+|||||++ ++...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 47899999999999999999998765433333333 333444466789999999986 456667788899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce-EEEEecccCC
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (181)
+|++++|+|+.++.+.. ..++.+.++. .++|+++|+||+|+..... +..+ .. ..+. .++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~~~-----~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYD-----FY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CCCS-----SG-GGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--hHHH-----HH-HcCCCCeEEEeCcCC
Confidence 99999999998765544 3456666654 5789999999999865311 0000 01 1111 4779999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030187 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~~v~~~~~~l~~~l~ 178 (181)
.|++++++++.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFK 164 (436)
T ss_dssp BTHHHHHHHHHHTGG
T ss_pred CChHHHHHHHHHhcC
Confidence 999999999998875
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=5.3e-24 Score=159.58 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=114.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcC-EEEEEEEcCCC----CCcccccccccc---Ccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKN-ISFTVWDVGGQ----DKIRPLWRHYFQ---NTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~----~~~~~~~~~~~~---~~d 86 (181)
.+|+++|.+|+|||||+++|...... . ...|...+...+...+ ..+.+||+||. .++..+...+++ +++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 47999999999999999999876532 1 1234555555566654 78999999994 344445454544 599
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEeccc
Q 030187 87 GLIFVVDSND---RDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (181)
++++|+|+++ +++++....|+.++.... ....+|+++|+||+|+.... ..+++.+.+... .+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEEECC
Confidence 9999999998 788888887777765542 23579999999999987532 122333333211 458899999
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030187 162 SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~~ 179 (181)
++.|+++++++|.+.+.+
T Consensus 313 tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 313 TREGLRELLFEVANQLEN 330 (342)
T ss_dssp CSSTTHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999998764
No 140
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.8e-24 Score=168.39 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=110.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCC----------CCCcccccc-
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG----------QDKIRPLWR- 79 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~- 79 (181)
...++|+++|.+|+|||||+|+|.+.... ...+ |.......+...+..+++||||| ++++.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999976532 2222 33333455667788999999999 566665544
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++..+ ....++...+.. .++|+++|+||+|+.+... .++..+............++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 47789999999999976533 334444444443 5799999999999876432 2333222221111112357999
Q ss_pred ecccCCCCHHHHHHHHHHHhh
Q 030187 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||++|.|++++|+.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 141
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.90 E-value=7.3e-23 Score=161.25 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=90.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc------------------CCcc-------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL------------------GEIV-------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~------------------~~~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++|+|||||+++|.. .... ....|+......+.+.+..+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 3567999999999999999999961 1111 12335666667788889999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|+.+|...+..+++.+|++++|+|+++..+.+....| ..... .++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCSC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcccc
Confidence 9999999999999999999999999987666655443 33333 478999999999997643
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=1.4e-23 Score=162.98 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=100.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcCEEEEEEEcCCCCCcccc--------ccccc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 82 (181)
++.++|+++|++|+|||||+|+|.+... ....+ |.......+...+..+.+|||||..++... ...++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999987643 22222 333334456678899999999998665433 23467
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (181)
+.+|++++|+|++++.+... ..++.. +. ..|+++|+||+|+....... ..... ....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~-l~-----~~piivV~NK~Dl~~~~~~~------~~~~~-~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQ-VK-----HRPLILVMNKIDLVEKQLIT------SLEYP-ENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHH-HT-----TSCEEEEEECTTSSCGGGST------TCCCC-TTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHh-cc-----CCcEEEEEECCCCCcchhhH------HHHHh-ccCCcEEEEECCC
Confidence 88999999999998766554 233333 32 36999999999987642221 01101 1234689999999
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030187 163 GEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 163 ~~~v~~~~~~l~~~l~~ 179 (181)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987753
No 143
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.89 E-value=1.3e-23 Score=159.81 Aligned_cols=132 Identities=26% Similarity=0.369 Sum_probs=102.8
Q ss_pred ccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCC----------cccHHHHHHHHHHHhcCCCCC
Q 030187 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (181)
|+++....+..+++.+++|||+|+++++..|..++++++++|+|||+++ .++|.+...|+..+......+
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5556666677788999999999999999999999999999999999998 899999999999998876667
Q ss_pred CCeEEEEEeCCCCCCC-----C-C-------------------------HhHHHhhh-----CCC----cccCcceEEEE
Q 030187 118 DAVLLVFANKQDLPNA-----M-N-------------------------AAEITDKL-----GLH----SLRQRHWYIQS 157 (181)
Q Consensus 118 ~~piivv~nK~D~~~~-----~-~-------------------------~~~~~~~~-----~~~----~~~~~~~~~~~ 157 (181)
+.|+++++||+|+... . . ..+....+ ... .....++.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999997421 0 0 00111111 000 00113567889
Q ss_pred ecccCCCCHHHHHHHHHHHhhc
Q 030187 158 TCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
|||+++.||+++|..+.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=3.7e-24 Score=168.20 Aligned_cols=157 Identities=17% Similarity=0.105 Sum_probs=112.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccc-ccC--ccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
+..+|+++|++++|||||+++|.+..+.. ..+ |..+....+.. .+..+.+|||||++.|...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 56899999999999999999998765432 122 33333333333 345799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-cccCcceEEEEecccCCCCHHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
+|+++....+.... +..... .++|+++++||+|+.+.. ............ ......++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~e~-l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTVES-IQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHHHH-HHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHHHH-HHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99987655554433 323222 478999999999987532 112222222211 1112357899999999999999
Q ss_pred HHHHHHHHh
Q 030187 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~l~~~l 177 (181)
+++.|...+
T Consensus 158 Lle~I~~l~ 166 (537)
T 3izy_P 158 LAEATIALA 166 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998765
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=1.1e-22 Score=156.36 Aligned_cols=161 Identities=17% Similarity=0.091 Sum_probs=103.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCc---c-c--ccCccceeEEEEEE---------------c--------CEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-T--TIPTIGFNVETVEY---------------K--------NISF 63 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~---------------~--------~~~~ 63 (181)
.++..++|+++|++++|||||+++|.+... . + ...|++..+..... . ...+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 346679999999999999999999985432 1 1 12255554433222 1 1689
Q ss_pred EEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030187 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI 139 (181)
Q Consensus 64 ~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~ 139 (181)
.+||+||+++|...+...+..+|++++|+|+++..+.......+..+ ... ...|+++++||+|+.+... .+++
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 99999999999888888888999999999998643112222222211 111 2357999999999976542 2233
Q ss_pred HhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.+.+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 161 ~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 161 KEFVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 332221 1123567999999999999999999998664
No 146
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=4.1e-24 Score=166.43 Aligned_cols=158 Identities=23% Similarity=0.282 Sum_probs=102.9
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcCCcccccCcccee----EEEEEEcCEEEEEEEcCC--------CCCccc
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGG--------QDKIRP 76 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G--------~~~~~~ 76 (181)
-.....+...+|+++|.+|+|||||+|+|.+.......++.+.+ +..+...+..+.+||||| ++++..
T Consensus 15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp --------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHH
T ss_pred CCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHH
Confidence 33455567789999999999999999999987754333333333 333444567899999999 556667
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEE
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
....+++.+|++++|+|+.+ ++.....++.+.+.. .++|+++|+||+|+..... ...+.+.+ ..+ ..+
T Consensus 95 ~~~~~~~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~~l----g~~-~~~ 162 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFYSL----GFG-EPY 162 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----SSS-SEE
T ss_pred HHHhhHhhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHHHc----CCC-ceE
Confidence 77888899999999999854 344555667777765 5789999999999864321 11111111 111 245
Q ss_pred EecccCCCCHHHHHHHHHHHhh
Q 030187 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 157 ~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++||++|.|+.++++.+.+.+.
T Consensus 163 ~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 163 PISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp ECCTTTCTTHHHHHHHHHTTGG
T ss_pred EeecccccchHHHHHHHHhhcc
Confidence 8999999999999999988764
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-23 Score=146.15 Aligned_cols=125 Identities=26% Similarity=0.386 Sum_probs=96.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCccc----ccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC----c
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~ 85 (181)
..+.++|+++|++|+|||||++++.+..+.. ..++... ......+.+||+||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4577999999999999999999999887543 2222222 1256789999999999998888887776 8
Q ss_pred cEEEEEEECC-CcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030187 86 QGLIFVVDSN-DRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
|++++|+|++ +++++.....|+..++... ...+.|+++|+||+|+.+.....++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 8889999988888876542 22579999999999998776665555443
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=2.8e-22 Score=148.29 Aligned_cols=153 Identities=20% Similarity=0.109 Sum_probs=108.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc--cC--ccceeEEEEEEcCEEEEEEEcCCCC---------Cccccccccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD---------KIRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 82 (181)
+..+|+++|++|+|||||+|+|.+...... .+ |.......+...+..+.+|||||.. .+......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 445899999999999999999998875321 12 2222333456678899999999987 3445556778
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcce-EEEEecc
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (181)
+.+|++++|+|+++ +.....++.+.+.. .+.|+++++||+|+.. .....+....+.. ..++ .++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHH----hcCcCceEEEEC
Confidence 99999999999975 33444455555543 4789999999999876 2222222222211 1122 6889999
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030187 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~~v~~~~~~l~~~l~ 178 (181)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987664
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=2.5e-23 Score=162.71 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=109.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC----cc------cccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~----~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (181)
++.++|+++|++++|||||+++|.+.. .. ....|++..+..+...+..+.+|||||+++|...+..++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 457899999999999999999998766 11 12235566666677788999999999999999888889999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC--Ccc-cCcceEEEEeccc
Q 030187 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--HSL-RQRHWYIQSTCAT 161 (181)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~Sa~ 161 (181)
+|++++|+|+++...-+.. ..+. .+.. .++|+++++||+|+.+....+++.+++.. ... ...+.+++++||+
T Consensus 97 aD~~ilVvda~~g~~~qt~-e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTG-EHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp CCEEEEEEETTTCSCHHHH-HHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred CCEEEEEEecCCCccHHHH-HHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 9999999999863221211 1121 2222 36788999999999864222222221110 000 1124679999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030187 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~~v~~~~~~l~~~l~ 178 (181)
+|.|++++++.|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999988653
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=1.9e-23 Score=161.72 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=106.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY 58 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 58 (181)
..+..++|+++|++++|||||+++|.... +. ....|++.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34567999999999999999999995431 00 122356666667778
Q ss_pred cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCccc---HH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~ 131 (181)
.+..+.+|||||+++|...+..+++.+|++++|+|+++... |+ .....+... .. .+.| +++++||+|+.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCc
Confidence 88999999999999999999999999999999999986532 11 112222211 11 3455 99999999986
Q ss_pred CCCC----HhHHHhh----hCCCcccC-cceEEEEecccCCCCHHHHHH
Q 030187 132 NAMN----AAEITDK----LGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 132 ~~~~----~~~~~~~----~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
.... .+++..+ +....+.. .+++++++||++|.|++++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 4321 1122221 11111111 256899999999999999554
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.3e-22 Score=157.34 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=105.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC--ccceeEEEEEEcCEEEEEEEcCCCCCccccc------------c
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW------------R 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------------~ 79 (181)
..++|+++|++|+|||||+|+|.+.... ...+ |.......+...+..+.+|||+|..+..... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 3589999999999999999999987642 2222 3333344566777889999999975432211 2
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEE
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
.+++.+|++++|+|+++..+.+. .++...+.. .+.|+++++||+|+.+... .+++.+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 45678999999999987666554 233333332 5789999999999875422 2333222211111122346889
Q ss_pred ecccCCCCHHHHHHHHHHHhh
Q 030187 158 TCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||++|.|++++|+.+.+.+.
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.89 E-value=8.8e-23 Score=154.70 Aligned_cols=146 Identities=8% Similarity=0.036 Sum_probs=110.1
Q ss_pred eEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc
Q 030187 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 98 (181)
+|+++|++++|||||+++|. ....|++..+..+...+..+.+|||||+++|.......++.+|++++|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999998 44567777777787788899999999999998888888899999999999 5 33
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCcccCcceEEEE--ecccC---CCCHH
Q 030187 99 RVVEARDELHRMLNEDELRDAVL-LVFAN-KQDLPNAMNAA----EITDKLGLHSLRQRHWYIQS--TCATS---GEGLY 167 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~v~ 167 (181)
.+.....++..... .++|. ++++| |+|+ +....+ ++.+.+... ....+++++ +||++ +.|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 44444554443332 35666 88898 9999 432222 222222211 123468999 99999 99999
Q ss_pred HHHHHHHHHhh
Q 030187 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~l~~~l~ 178 (181)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999988754
No 153
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=2.2e-22 Score=160.31 Aligned_cols=156 Identities=20% Similarity=0.171 Sum_probs=107.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCccccc-----CccceeEEEEE----------------EcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 73 (181)
.+.++|+++|++++|||||+++|.+..+.... ++++..+.... .....+++|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876543222 23343332211 1112699999999999
Q ss_pred ccccccccccCccEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--------------~ 136 (181)
|...+..+++.+|++++|+|+++ ++++..+. .+ .. .++|+++++||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-HH---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99999999999999999999987 44443332 12 21 4789999999999864211 0
Q ss_pred h-----------HHHhhhCCCcc----------cCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 137 A-----------EITDKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+ ++...+....+ ....++++++||++|.|+++++++|...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 11111110001 024568999999999999999999987653
No 154
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=2.4e-22 Score=145.82 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=103.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCC-cc-ccc---CccceeEEEEEEcCEEEEEEEcCCCCCccccc---------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-IV-TTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW--------- 78 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~-~~-~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 78 (181)
+....++|+++|++|+|||||+|+|.+.. +. ... .|.......+...+..+.+|||||+..+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 44567999999999999999999999876 22 122 34444555677788999999999987654322
Q ss_pred --cccccCccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhh
Q 030187 79 --RHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFAN-KQDLPNAMNAAE------------ITDK 142 (181)
Q Consensus 79 --~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~n-K~D~~~~~~~~~------------~~~~ 142 (181)
..+++.+|++++|+|+++.... .....++.+..... ...|.++++| |+|+... .... +...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 2367889999999999853222 22223344433211 1345555555 9999754 2222 2222
Q ss_pred hCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...... .+..+++||++|.|++++|+.|.+.+..
T Consensus 175 ~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 221100 0111689999999999999999988764
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=9.3e-23 Score=157.87 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=106.1
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcCC---ccc---------------------------------ccCccc
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE---IVT---------------------------------TIPTIG 50 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~---~~~---------------------------------~~~t~~ 50 (181)
.++.+...+..++|+++|++++|||||+++|.+.. +.. ...|+.
T Consensus 14 ~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~ 93 (434)
T 1zun_B 14 AYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITID 93 (434)
T ss_dssp --CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCC
T ss_pred HHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEE
Confidence 33444445567999999999999999999997542 000 122444
Q ss_pred eeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 51 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
..+..+...+..+.+|||||+++|...+..+++.+|++++|+|+++....+. ..++.. +... ...|+++++||+|+
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~-~~~~--~~~~iIvviNK~Dl 169 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYI-ASLL--GIKHIVVAINKMDL 169 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHH-HHHT--TCCEEEEEEECTTT
T ss_pred eeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHH-HHHc--CCCeEEEEEEcCcC
Confidence 4555667778899999999999999888888999999999999987643332 233322 2221 12479999999999
Q ss_pred CCCCC--HhHHHhhh----CCCcccCcceEEEEecccCCCCHHHH
Q 030187 131 PNAMN--AAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 131 ~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
.+... .+++.... .........++++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 76321 11121111 11111123478999999999999874
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=3.1e-22 Score=159.36 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=107.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC--cc---------c-------ccCccceeEEEEEEc-----CEEEEEEEcCCCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE--IV---------T-------TIPTIGFNVETVEYK-----NISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~--~~---------~-------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~ 72 (181)
+..+|+++|++++|||||+++|.... +. . ...|+......+.+. .+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45699999999999999999997521 11 0 111333333344443 3789999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCccc
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLR 149 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 149 (181)
+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+...... +++.+.++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 99999999999999999999999887777776665443 2 37899999999999865421 23333333321
Q ss_pred CcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..++++||++|.|++++++.+.+.+..
T Consensus 156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 137899999999999999999988754
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.88 E-value=1.7e-23 Score=161.96 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=101.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCccceeEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|... .+. ....|++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 56789999999999999999999753 111 12245556666677788
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHH---HHHhcCCCCCC-CeEEEEEeCCCCCCCCC-
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDELRD-AVLLVFANKQDLPNAMN- 135 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~~~~-~piivv~nK~D~~~~~~- 135 (181)
..+.+|||||+++|...+..+++.+|++++|+|+++ .+|+....|. .+.+......+ .|+++++||+|+.+...
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 999999999999999999999999999999999987 6666543211 11111000123 46899999999976321
Q ss_pred -------HhHHHhhhCCCcccCcceEEEEecccCCCCHHHH
Q 030187 136 -------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
.+++...+....+....++++++||++|.|+.++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1122222211111222468999999999999754
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=1.4e-23 Score=164.38 Aligned_cols=153 Identities=20% Similarity=0.167 Sum_probs=104.2
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--cc--------------------------------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|.+.. +. ....|+......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567999999999999999999996541 00 1133566666777788
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHH-----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE-----ARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+..+.+|||||+++|...+..+++.+|++++|+|+++..++.. .......++... ...|+++++||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8999999999999999999999999999999999987654322 112222222221 235699999999997632
Q ss_pred --CHhHHHhhh----CCCcccCcceEEEEecccCCCCHHH
Q 030187 135 --NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 135 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (181)
..+++...+ ........+++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 112222111 1111223367899999999999975
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1.2e-22 Score=156.23 Aligned_cols=161 Identities=18% Similarity=0.118 Sum_probs=109.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCc---c-c--ccCccceeEEEEEEc-----------------------CEEE
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI---V-T--TIPTIGFNVETVEYK-----------------------NISF 63 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~~-----------------------~~~~ 63 (181)
..+..++|+++|++++|||||+++|.+... . + ...|+...+...... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 345668999999999999999999985431 1 1 222665554433320 1689
Q ss_pred EEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHH
Q 030187 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEI 139 (181)
Q Consensus 64 ~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~ 139 (181)
.+|||||+++|...+...+..+|++++|+|+++..+.......+..+ ... ...|+++++||+|+.+... .+++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999999888888888999999999998643111122222111 111 2357999999999976432 1222
Q ss_pred HhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.+.+.. ....+++++++||++|.|++++++.|.+.+.
T Consensus 163 ~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 222221 1123568999999999999999999998664
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=6.4e-22 Score=157.37 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=110.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc---------c-------ccCccceeEEEEEEc-----CEEEEEEEcCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV---------T-------TIPTIGFNVETVEYK-----NISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~---------~-------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~ 71 (181)
++..+|+++|++++|||||+++|... .+. + ...|+......+.+. .+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34579999999999999999999752 111 0 111333222334332 378999999999
Q ss_pred CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcc
Q 030187 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~~~~ 148 (181)
.+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+...... +++.+.++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~-- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD-- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC--
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCCC--
Confidence 999998888999999999999999888887776665443 2 47899999999999865421 1222222221
Q ss_pred cCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...++++||++|.|++++++.|.+.+..
T Consensus 157 ---~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 ---PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1137899999999999999999988753
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=6.1e-23 Score=157.25 Aligned_cols=158 Identities=18% Similarity=0.089 Sum_probs=110.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC-------cc------------cccCccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
..++|+++|++++|||||+++|.+.. +. ....|++.....+...+..+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999997631 10 122355555555666778999999999999988
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCcccC
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQ 150 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 150 (181)
.+..+++.+|++++|+|+++....+.. ..+... .. .++| +++++||+|+.+... . +++.+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888889999999999999876544333 333222 22 3677 789999999875211 1 11222221111222
Q ss_pred cceEEEEecccCCCC----------HHHHHHHHHHHhh
Q 030187 151 RHWYIQSTCATSGEG----------LYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~Sa~~~~~----------v~~~~~~l~~~l~ 178 (181)
..++++++||++|.| ++++++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 346799999999764 8999999988664
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=1.7e-22 Score=155.16 Aligned_cols=160 Identities=20% Similarity=0.164 Sum_probs=112.0
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--------Ccc------------cccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--------EIV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
.+..++|+++|++++|||||+++|.+. .+. ....|+......+...+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356689999999999999999999862 111 122355555556666778999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCc
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHS 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~-~~----~~~~~~~~~~ 147 (181)
|...+..+++.+|++++|+|+++....+ ...++..... .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9988888999999999999998765433 3444443332 3677 899999999975211 11 1212111111
Q ss_pred ccCcceEEEEecccCCCC------------------HHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCATSGEG------------------LYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~------------------v~~~~~~l~~~l~ 178 (181)
+.....+++++||++|.| ++++++.|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 112245799999999987 7888888877654
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=5.5e-22 Score=149.95 Aligned_cols=154 Identities=18% Similarity=0.120 Sum_probs=104.7
Q ss_pred cce-EEEEcCCCCChHHHHhhhhcCCcc---cccCccceeEEEEEEcCEEEEEEEcCCCCC---------cccccccccc
Q 030187 17 EMR-ILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQ 83 (181)
Q Consensus 17 ~~~-i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~ 83 (181)
.++ |+++|++|+|||||+|+|.+.... ...+|.+.....+...+..+.+|||+|..+ +...+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 999999999999999999987642 223466666667777788999999999632 22222 3468
Q ss_pred CccEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---H----HhhhCCCcccCcceE
Q 030187 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---I----TDKLGLHSLRQRHWY 154 (181)
Q Consensus 84 ~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~---~----~~~~~~~~~~~~~~~ 154 (181)
.+|++++|+|++++. ..... ..+.+.+......+.|+++|+||+|+.+.. ... . ...+. ..+.+
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~~ 329 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIFD 329 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEEE
T ss_pred hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCCc
Confidence 899999999998775 33333 333344443333578999999999987643 211 1 12221 12346
Q ss_pred EEEecccCCCCHHHHHHHHHHHhh
Q 030187 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 155 ~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
++++||+++.|++++++.|.+.+.
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHhc
Confidence 789999999999999999988765
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=3.3e-23 Score=161.66 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=108.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc---cCccceeEEEEEEcCEEEEEEEcCCCCCccccccccccCccEEEEE
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 91 (181)
.+..+|+++|++++|||||+++|.+..+... ..|.....+.+...+..+.+|||||++.|...+...++.+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999987543321 1233333334445567899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--ccc--CcceEEEEecccCCCCHH
Q 030187 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH--SLR--QRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~Sa~~~~~v~ 167 (181)
+|+++....+.. ..+..... .+.|+++++||+|+..... +.+...+... ..+ ...++++++||++|.|++
T Consensus 82 Vda~~g~~~qT~-e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQTI-EAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTTH-HHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHHH-HHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999863221211 12222212 4789999999999975321 1121111110 011 123689999999999999
Q ss_pred HHHHHHHHH
Q 030187 168 EGLDWLSNN 176 (181)
Q Consensus 168 ~~~~~l~~~ 176 (181)
++++.|...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.3e-23 Score=164.62 Aligned_cols=153 Identities=19% Similarity=0.156 Sum_probs=104.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc----------------------------------cccCccceeEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|.+.... ....|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 46799999999999999999999865210 12335666666788888
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~- 134 (181)
..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ ..........+... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 99999999999999999999999999999999997531 11 01111111222221 235699999999997631
Q ss_pred -CHhHHHhh----hCCCcccCcceEEEEecccCCCCHHHH
Q 030187 135 -NAAEITDK----LGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 135 -~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
..+++... +........+++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11111111 111112223568999999999999865
No 166
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=6.4e-22 Score=142.59 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=101.9
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEEcCEEEEEEEcCCC--------CCccccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQ--------DKIRPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~ 78 (181)
......++|+++|.+|+|||||+|++.+...... ..|.......+...+..+.+|||||. +++....
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3445779999999999999999999998775321 23445555667778899999999996 3333333
Q ss_pred cccc----cCccEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCccc
Q 030187 79 RHYF----QNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----LHSLR 149 (181)
Q Consensus 79 ~~~~----~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~ 149 (181)
..++ +.+|++++|+|+++.... .....++.+.... ...+.|+++++||.|+.... .++...... ....+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHH
Confidence 3333 899999999999743221 2223334343321 22368999999999997642 222111100 00011
Q ss_pred Ccc--eEEEEeccc---CCCCHHHHHHHHHHHhhc
Q 030187 150 QRH--WYIQSTCAT---SGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 150 ~~~--~~~~~~Sa~---~~~~v~~~~~~l~~~l~~ 179 (181)
.++ +.++..++. ++.|++++++.+.+.+.+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 111 233444433 268999999999887753
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.86 E-value=6.8e-23 Score=159.79 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=91.4
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhc--CCcc--------------------------------cccCccceeEEEE
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKL--GEIV--------------------------------TTIPTIGFNVETV 56 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~ 56 (181)
....+..++|+++|++++|||||+++|.. +.+. ....|++..+..+
T Consensus 37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 34456779999999999999999999964 1110 1234555555667
Q ss_pred EEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cHHH---HHHHHHHHhcCCCCCCCe-EEEEEeCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVE---ARDELHRMLNEDELRDAV-LLVFANKQD 129 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~---~~~~~~~~~~~~~~~~~p-iivv~nK~D 129 (181)
...+..+.+|||||+++|...+..+++.+|++|+|+|+++.. +|+. ....+... .. .++| +++++||+|
T Consensus 117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivviNK~D 192 (467)
T 1r5b_A 117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMD 192 (467)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEEECcc
Confidence 777899999999999999999999999999999999998652 2221 11111111 11 3566 999999999
Q ss_pred CCCCC-CH---h----HHHhhhCCC-ccc-CcceEEEEecccCCCCHHHHH
Q 030187 130 LPNAM-NA---A----EITDKLGLH-SLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 130 ~~~~~-~~---~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~v~~~~ 170 (181)
+.... .. + ++...+... .+. ..+++++++||++|.|+++++
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 96422 11 1 122111110 111 125789999999999998754
No 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1.9e-23 Score=166.70 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=89.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCC--c-------------------------c-------cccCccceeEEEEEEc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------V-------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~-------------------------~-------~~~~t~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|.... + . ....|+......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4566899999999999999999995321 0 0 1122445555556667
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cH--HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV--VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~ 133 (181)
+..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ ..........+.. .++| +++|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 788999999999999999999999999999999997532 11 1111111111222 2454 9999999998753
Q ss_pred C--CH----hHHHhhh-CCCcccCcceEEEEecccCCCCHH--------------HHHHHHHHHh
Q 030187 134 M--NA----AEITDKL-GLHSLRQRHWYIQSTCATSGEGLY--------------EGLDWLSNNI 177 (181)
Q Consensus 134 ~--~~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~~~~~l~~~l 177 (181)
. .. .++...+ ....+...+++++++||++|.|+. ++++.|.+.+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 2 11 2233333 222333446789999999999998 6777776543
No 169
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=4e-22 Score=145.77 Aligned_cols=158 Identities=15% Similarity=0.235 Sum_probs=89.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc--cc-------cCccceeEEEEEE----cCEEEEEEEcCCCCCc-------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-------IPTIGFNVETVEY----KNISFTVWDVGGQDKI------- 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~-------~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~------- 74 (181)
...++|+++|.+|+|||||+|+|.+.... .. .+|++........ ..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 45689999999999999999998766532 11 4566666555443 2369999999997432
Q ss_pred cccc-------cccc-------------cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 75 RPLW-------RHYF-------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 75 ~~~~-------~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
..+. ..++ .++|+++++++.+.. ++......+...+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 2221 2222 237899999987642 233334444444443 78999999999987543
Q ss_pred CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
........+. ..+...+++++++||+++.|+++++++|.+.+.
T Consensus 161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3222211111 111223456788999999999999999987653
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.3e-22 Score=152.11 Aligned_cols=161 Identities=15% Similarity=0.206 Sum_probs=86.2
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCc-cc-c--------cCccceeEEEEE--EcC--EEEEEEEcCCC-------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI-VT-T--------IPTIGFNVETVE--YKN--ISFTVWDVGGQ------- 71 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~-~--------~~t~~~~~~~~~--~~~--~~~~i~D~~G~------- 71 (181)
.....++|+++|++|+|||||+++|.+... .. . .+|++.....+. ..+ +.+++|||||.
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 345568999999999999999999876432 11 1 145444443322 223 57999999998
Q ss_pred CCcccccc-------ccccCcc-------------EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 72 DKIRPLWR-------HYFQNTQ-------------GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~-------~~~~~~d-------------~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+.+..++. .+++.++ +++++++.+ ..++......+...+. .++|+++|+||+|+.
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence 66776665 5555443 344444432 4566666655555443 578999999999987
Q ss_pred CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
......... ......+...+++++++||+++.| ++.|..+.+.+.+.
T Consensus 188 ~~~ev~~~k-~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 188 TLKERERLK-KRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp CHHHHHHHH-HHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CHHHHHHHH-HHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 642222111 111122334466889999999999 88888877776543
No 171
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.85 E-value=1.6e-20 Score=148.14 Aligned_cols=115 Identities=22% Similarity=0.198 Sum_probs=84.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC--cc-----------------------cccCccceeEEEEEEcCEEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV-----------------------TTIPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~ 69 (181)
++..+|+++|++|+|||||+++|.... +. ....|+......+.+.+..+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 456899999999999999999998531 10 01123333445677788999999999
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|+.+|...+..+++.+|++|+|+|+++....+. ...+. .+.. .++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~-~~~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLME-VTRL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHH-HHTT---TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHH-HHHH---cCCCEEEEEcCcCCcccc
Confidence 999999888889999999999999987543222 22222 2222 478999999999997654
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=5.5e-21 Score=141.17 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=99.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-------cccCc----------------------cce--------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGF-------------- 51 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t----------------------~~~-------------- 51 (181)
...++|+|+|.+|+|||||+|+|.+..+. +..|+ ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999987753 11121 000
Q ss_pred -----------eEEEEEEc-CEEEEEEEcCCCC-------------CccccccccccCccEEE-EEEECCCcccHHHHHH
Q 030187 52 -----------NVETVEYK-NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRVVEARD 105 (181)
Q Consensus 52 -----------~~~~~~~~-~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~~ 105 (181)
....+... ...+.+|||||.. .+......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00011111 3689999999964 23445667888888777 6899976544333222
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 106 ~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
++ ..+.. .+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++++++.|.+
T Consensus 184 ~~-~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IA-KEVDP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HH-HHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HH-HHhCC---CCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 33 33332 4789999999999876432 2222211 11111112247889999999999999998865
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=2.6e-21 Score=150.59 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=103.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Ccc--------------------------------cccCccceeEEEEEEcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 60 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (181)
+..++|+++|++++|||||+++|.+. .+. ....|++..+..+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999753 110 12346666667788888
Q ss_pred EEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc---cHH---HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDA-VLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~ 133 (181)
..+.+|||||+++|...+..+++.+|++++|+|+++.. +|+ .....+.. +.. .+. ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997542 121 12222222 221 345 49999999999742
Q ss_pred C--CHhHHHhhh----CCCcccCcceEEEEecccCCCCHHHH
Q 030187 134 M--NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 134 ~--~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~~ 169 (181)
. ..+++..+. ....+...+++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 111111111 11111122467999999999998743
No 174
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=140.79 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=97.2
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEEcCEEEEEEEcCCCC-----------Cc
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQD-----------KI 74 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~-----------~~ 74 (181)
.......++|+++|++|+|||||+|+|.+...... ..|.......+...+..+.+|||||.. .+
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 34455779999999999999999999998775322 234445555677788999999999954 23
Q ss_pred cccccccccCccEEEEEEECCCcccHH-HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccC
Q 030187 75 RPLWRHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQ 150 (181)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~ 150 (181)
...+...++.+|++++|+|+++..... ....++....... ...|+++|+||+|+......++...... ....+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 344455667889999999987544321 1222232222211 2358999999999865432221110000 000111
Q ss_pred cceEEEEeccc-----CCCCHHHHHHHHHHHhh
Q 030187 151 RHWYIQSTCAT-----SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~Sa~-----~~~~v~~~~~~l~~~l~ 178 (181)
.+..++.++.. +..++.++++.+.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 11124444444 34789999998877764
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=5.9e-21 Score=159.23 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=108.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC-------cc------------cccCccceeEEEEEEcCEEEEEEEcCCCCCcc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (181)
+..++|+++|++++|||||+++|.+.. +. ....|+......++..+..+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999997631 00 11123333344566677899999999999999
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCccc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-----AEITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~ 149 (181)
..+..+++.+|++|+|+|+++....+ ...++..+.. .++| +++++||+|+.+.... +++.+.+....+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888999999999999998754332 2333332222 3577 8999999999753211 1122222111122
Q ss_pred CcceEEEEecccCC--------CCHHHHHHHHHHHhh
Q 030187 150 QRHWYIQSTCATSG--------EGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~~~~~~~~~Sa~~~--------~~v~~~~~~l~~~l~ 178 (181)
...++++++||++| .|++++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23468999999999 578999999887654
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=5.7e-20 Score=149.17 Aligned_cols=115 Identities=23% Similarity=0.131 Sum_probs=88.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC--Cc------------c-------cccCccceeEEEEEEcCEEEEEEEcCCCCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG--EI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (181)
++..+|+++|++|+|||||+++|... .+ . ....|+......+.+.+..+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 45689999999999999999999731 11 0 223456666667778889999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|...+..+++.+|++++|+|+++..+.+....|. .... .++|+++++||+|+....
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccCC
Confidence 9999999999999999999999887777665543 3333 478999999999997653
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=6.7e-20 Score=133.13 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=82.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcccc----cCccceeEEEEEEcCEEEEEEEcCCCCCcccccccccc-------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ------- 83 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------- 83 (181)
++.++|+++|++|+|||||+|+|.+...... ..|.......+...+..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3679999999999999999999998774221 12445555667778899999999999887766544443
Q ss_pred --CccEEEEEEECCCcccHHHHHHHHHHHhcCCCCC--CCeEEEEEeCCCCCC
Q 030187 84 --NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPN 132 (181)
Q Consensus 84 --~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~ 132 (181)
++|++++|++++... +......+.+.+...... ..|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987544 433332222222221112 248999999999853
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.82 E-value=2.6e-19 Score=144.80 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=85.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc---------------------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
..+..+|+++|++|+|||||+++|.+.... ....++......+...++.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 345679999999999999999999732110 11224445556677788999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+|...+..+++.+|++++|+|+++.-..+.. .++..... .++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 9999899999999999999998765443332 44444433 478999999999987
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.81 E-value=3.5e-19 Score=144.60 Aligned_cols=116 Identities=20% Similarity=0.144 Sum_probs=88.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc--CCcc-------------------cccCccceeEEEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL--GEIV-------------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 72 (181)
.++..+|+++|++|+|||||+++|.. +.+. ....|+......+.+.+..+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45668999999999999999999984 2211 11234445556677788999999999999
Q ss_pred CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+|...+..+++.+|++++|+|+++..+.+....| ..+.. .+.|+++++||+|+....
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCccccc
Confidence 9999999999999999999999987776665443 33333 478999999999997653
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=127.21 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=96.5
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCc-ccccCccceeE--EEEEEcCEEEEEEEcCCCCCc----------cccc
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI----------RPLW 78 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~----------~~~~ 78 (181)
..-....+|+++|++|+|||||++++.+..+ ....++.+... ..+...+ .+.+||+||.... +...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3445678999999999999999999998763 22233333222 1222233 5789999997532 2222
Q ss_pred cccc---cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCc
Q 030187 79 RHYF---QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQR 151 (181)
Q Consensus 79 ~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 151 (181)
..++ +.++++++++|++.+.+.... .+...+.. .+.|+++++||+|..+.... ..+....... ..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~---~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF---NG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG---CS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc---CC
Confidence 2333 578999999999876655321 11122221 46889999999998653211 1122211111 12
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.+.++++||+++.|++++++.|.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 357889999999999999999988654
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=1.1e-18 Score=141.88 Aligned_cols=115 Identities=16% Similarity=0.036 Sum_probs=86.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC--Ccc-------------------cccCccceeEEEEEEcC-------EEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------TTIPTIGFNVETVEYKN-------ISFTV 65 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~-------~~~~i 65 (181)
.++..+|+++|++|+|||||+++|... .+. ....|+......+.+.+ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 356689999999999999999999642 111 11234444445555555 89999
Q ss_pred EEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 66 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
|||||+.+|...+..+++.+|++|+|+|+++....+.... |..... .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999987655544433 333322 47899999999998764
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=3.5e-19 Score=132.48 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=69.5
Q ss_pred CEEEEEEEcCCCCC-------------ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 60 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 60 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
...+.+|||||..+ +......+++++|++++|+|+++.+........+...+.. .+.|+++|+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~N 206 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVIT 206 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEc
Confidence 36799999999754 3445667888999999999975332111111122333332 4789999999
Q ss_pred CCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccC---CCCHHHHHHHHHHHhh
Q 030187 127 KQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 127 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~l~~~l~ 178 (181)
|+|+..... ..+..+.. ........+++..+|+.+ +.|+.++++.+.+.+.
T Consensus 207 K~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 207 KLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 999876543 12222210 011111123444556666 8999999998877654
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=1.2e-19 Score=147.45 Aligned_cols=161 Identities=19% Similarity=0.243 Sum_probs=105.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc--cccCccc-eeE--------EEE--------------------------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG-FNV--------ETV-------------------------- 56 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~-~~~--------~~~-------------------------- 56 (181)
.++.++|+|+|++|+|||||+|.|.+.... ...|+.. +.. .+.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 457899999999999999999999987642 2222221 000 001
Q ss_pred --------------------EEcC----EEEEEEEcCCCCC---ccccccccccCccEEEEEEECCCcccHHHHHHHHHH
Q 030187 57 --------------------EYKN----ISFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 109 (181)
Q Consensus 57 --------------------~~~~----~~~~i~D~~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 109 (181)
.... ..+.+|||||... ....+..+++++|++++|+|++++.+......+. +
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-N 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-H
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-H
Confidence 1110 3589999999544 3455667889999999999998887776654443 3
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHh----hhCCC----cccCcceEEEEeccc--------
Q 030187 110 MLNEDELRDAVLLVFANKQDLPNAM-----NAAE-------ITD----KLGLH----SLRQRHWYIQSTCAT-------- 161 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~D~~~~~-----~~~~-------~~~----~~~~~----~~~~~~~~~~~~Sa~-------- 161 (181)
.+.. .+.|+++|+||+|+.... ..++ +.. .+... .......+++++||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 3332 367899999999986432 1001 111 11100 000123358899999
Q ss_pred ------CCCCHHHHHHHHHHHhh
Q 030187 162 ------SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ------~~~~v~~~~~~l~~~l~ 178 (181)
++.|++++++.|.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1.8e-18 Score=126.05 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=79.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc----CccceeEEEEEEcCEEEEEEEcCCCCCccccccc---------cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH---------YF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------~~ 82 (181)
..++|+++|++|+|||||+|+|.+..+.... .|.......+...+..+.+|||||..++...... ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 5799999999999999999999987753221 2333344556677899999999998776543221 13
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC--CeEEEEEeCCCCCCC
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD--AVLLVFANKQDLPNA 133 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~ 133 (181)
+.+|++++|+|++.. ++......+...+......+ .|+++|+||+|+...
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 479999999998643 34433322323332211122 689999999998654
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=2.5e-18 Score=131.68 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=106.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc--c-ccCccceeEEEEEEcC-EEEEEEEcCCCCCc----ccccc---ccccCcc
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLWR---HYFQNTQ 86 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~~~---~~~~~~d 86 (181)
-.|+++|++|+|||||++.+.+.... . ...|...+...+...+ ..+.+||+||..+. ..+.. .....++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999876421 1 1123334444455554 78999999997532 22222 2245799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCC
Q 030187 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (181)
.++.++|++ .+++..+..+..+..... .....|.++++||+|.......+.+.+.+. ..+.+++.+||+++.|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccC
Confidence 999999998 667777776666554421 123578899999999876522222322221 2234688999999999
Q ss_pred HHHHHHHHHHHhhc
Q 030187 166 LYEGLDWLSNNIAN 179 (181)
Q Consensus 166 v~~~~~~l~~~l~~ 179 (181)
++++++.|.+.+.+
T Consensus 312 i~eL~~~i~~~l~~ 325 (416)
T 1udx_A 312 LPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=6e-19 Score=133.56 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=93.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccccC---ccc------------------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIG------------------------------------------ 50 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t~~------------------------------------------ 50 (181)
.-.+|+|+|++|+|||||+|.|.+..+..... |..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999876421110 000
Q ss_pred --------e--e--EEEEEE-cCEEEEEEEcCCCCCc-------------cccccccccCccEEEEEEECCCcccHHHHH
Q 030187 51 --------F--N--VETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRDRVVEAR 104 (181)
Q Consensus 51 --------~--~--~~~~~~-~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 104 (181)
+ . ...+.. ....+.+|||||..++ ......+++++|++++|+|.++.+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0 0 001111 2356899999998776 455678899999999999876544332221
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHH
Q 030187 105 DELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 105 ~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 171 (181)
. .++......+.|+++|+||+|+.+... ..+..... ....+.+|+++|+.++.++++.+.
T Consensus 193 ~---~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 193 I---KISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp H---HHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCC
T ss_pred H---HHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCC
Confidence 2 222222225779999999999876432 22222221 123345688899998887776543
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=3.6e-19 Score=131.57 Aligned_cols=161 Identities=15% Similarity=0.170 Sum_probs=78.5
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcC-Ccccc---------cCccceeEEEEEE----cCEEEEEEEcCCC-------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLG-EIVTT---------IPTIGFNVETVEY----KNISFTVWDVGGQ------- 71 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~-~~~~~---------~~t~~~~~~~~~~----~~~~~~i~D~~G~------- 71 (181)
.+.-.++|+++|++|+|||||+++|.+. .+... .++.......+.. ....+++||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456689999999999999999998765 33221 1232222222222 2478999999998
Q ss_pred CCcccccc-------ccccCc-------------cEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 72 DKIRPLWR-------HYFQNT-------------QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+++..... .+++.. ++++++.+++. .+++.....+...+. ...|+++|+||+|+.
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 168 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCC
Confidence 55555443 343333 33555555432 223333322222222 367899999999987
Q ss_pred CCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
....... ........+...+++++++||+++ |++++|..+.+.+.++
T Consensus 169 ~~~e~~~-~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 169 TLKERER-LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp CHHHHHH-HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CHHHHHH-HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 5321110 011111112223457889999999 9999999999887653
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.74 E-value=3.8e-17 Score=129.44 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=86.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------------------Ccc-------cccCccceeEEEEEEcCEEEEEEEcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------------------EIV-------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------------------~~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G 70 (181)
+.-+|+|+|+.++|||||..+|... ... ....|+......+.+++..++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4569999999999999999999521 111 122356666778899999999999999
Q ss_pred CCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
|.+|.......++-+|++|+|+|+.+.=..+... .|..... .++|.++++||+|.....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSCCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHH----hCCceEEEEecccchhcc
Confidence 9999999999999999999999997653333333 3444444 489999999999987653
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.74 E-value=4.3e-18 Score=128.57 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=93.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc-------cccCcc---------------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI--------------------------------------- 49 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t~--------------------------------------- 49 (181)
...+|+|+|.+|+|||||+|+|.+..+. +..|+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999987753 111220
Q ss_pred ----cee----EEEEEEc-CEEEEEEEcCCCCC-------------ccccccccccCccEEEE-EEECCCcccHHHHHHH
Q 030187 50 ----GFN----VETVEYK-NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIF-VVDSNDRDRVVEARDE 106 (181)
Q Consensus 50 ----~~~----~~~~~~~-~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~~~ 106 (181)
++. ...+... ...+.+|||||..+ +......++++++.+++ |.|++..-.-.....
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~- 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK- 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH-
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH-
Confidence 000 0111222 46799999999532 33455667766665555 555543211111111
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 107 LHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+...+.. .+.|+++|+||+|+.+... .....+.. .........+++++||+++.|++++++.+.+
T Consensus 189 i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc---CCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2222222 5789999999999876432 22222211 1111111246889999999999999998875
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=7.3e-18 Score=124.66 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=99.3
Q ss_pred HHHhhhhcCCcc--cccCccceeEEEEEE-cCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcc-cHHHHHHHH
Q 030187 32 TILYKLKLGEIV--TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDEL 107 (181)
Q Consensus 32 sli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~ 107 (181)
+++.++..+.+. ...||++..+. +.. .+-++++||+ +++++.++..+++++|++++|||+++++ ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888775 46688885443 332 1237899999 9999999999999999999999999987 787777777
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 108 HRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 108 ~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
..+.. .++|+++|+||+|+.+... .+++.+.+.. . +++++|||++|.|++++|..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 65533 4799999999999875422 1223333321 1 46899999999999999987754
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=114.34 Aligned_cols=171 Identities=19% Similarity=0.322 Sum_probs=115.0
Q ss_pred HHHhhhccCcceEEEEcCC-CCChHHHHhhhhcCC-cc-------c----ccCccceeE---EEEEE-----------c-
Q 030187 8 LFSRLFAKKEMRILMVGLD-AAGKTTILYKLKLGE-IV-------T----TIPTIGFNV---ETVEY-----------K- 59 (181)
Q Consensus 8 ~~~~~~~~~~~~i~v~G~~-~~GKssli~~l~~~~-~~-------~----~~~t~~~~~---~~~~~-----------~- 59 (181)
|+.+...+...++++.||. ..=..+|+.++.... .. . -.+.+.+.+ ..++. +
T Consensus 7 ~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~ 86 (227)
T 3l82_B 7 FLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDR 86 (227)
T ss_dssp SSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------
T ss_pred HHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhh
Confidence 5566777888999999996 445668998887654 11 0 011111100 01111 0
Q ss_pred ----C----EEEEEE------EcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHH---HHHhcCCC-CCCCeE
Q 030187 60 ----N----ISFTVW------DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL---HRMLNEDE-LRDAVL 121 (181)
Q Consensus 60 ----~----~~~~i~------D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~pi 121 (181)
+ -++-.. +.+|+.+++..|..|+.++|++|||+|++|.+.++ ....+ ..++.... ..+.|+
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapL 165 (227)
T 3l82_B 87 AREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPL 165 (227)
T ss_dssp ------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCE
T ss_pred hhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeE
Confidence 0 011222 33489999999999999999999999999887654 44444 44444432 368999
Q ss_pred EEEEeCC-CCCCCCCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 122 LVFANKQ-DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 122 ivv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+|+.||. |++......++.+.+++... .+.+.++.|||.+|+|+.|.++||.+.+..|
T Consensus 166 LVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 166 LVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 9999995 78888899999999998877 4799999999999999999999999988765
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=127.96 Aligned_cols=159 Identities=13% Similarity=0.142 Sum_probs=74.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccc---------cCccceeEEEE--EE--cCEEEEEEEcCCCCCccc----
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRP---- 76 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---------~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~---- 76 (181)
+.-.++|+++|++|+|||||++.|.+..+... .+|.......+ .. ....+++||++|...+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 34567899999999999999999998765211 12332222111 11 235789999999765421
Q ss_pred ---------------------cccccccCccEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 77 ---------------------LWRHYFQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 ---------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+...+++++++.+++|+.... .++......+...+. .+.|+++|+||+|+....
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 113345566654454444322 345454433333333 378999999999987542
Q ss_pred CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
....... .....+...+++++++|++++.++++++..+...+
T Consensus 184 ev~~~k~-~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKK-QIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHH-HHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHH-HHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2211111 11111222345688999999999999888877654
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.71 E-value=8.7e-18 Score=126.93 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=94.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCcc---------------------ceeEE----------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTI---------------------GFNVE---------- 54 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~t~---------------------~~~~~---------- 54 (181)
..+...|+++|++|+|||||+++|... +. ....++. +....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 346689999999999999999999532 10 0111000 00000
Q ss_pred ----------EEEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 55 ----------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 55 ----------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
.+...+..+.+|||||..+. .......+|++++|+|+...+.++.+.. .....|.++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEE
Confidence 00124578999999995432 2334578999999999876544422211 1124688999
Q ss_pred EeCCCCCCCCCHh----HHHhhhCCCc--ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 125 ANKQDLPNAMNAA----EITDKLGLHS--LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 125 ~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||+|+....... ++...+.... ....+.+++++||++|.|++++++.|.+.+.
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9999986532222 2222211100 0112356899999999999999999988764
No 194
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=5e-18 Score=129.66 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc------cCccceeEEEE-----------------EEc---CEEEEEEEcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT------IPTIGFNVETV-----------------EYK---NISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~------~~t~~~~~~~~-----------------~~~---~~~~~i~D~~G 70 (181)
++|+++|.||+|||||+|+|.+.... .. .++.+.....+ ... .+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999887621 11 22222221111 011 36799999999
Q ss_pred CCC----cccc---ccccccCccEEEEEEECCCc
Q 030187 71 QDK----IRPL---WRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 71 ~~~----~~~~---~~~~~~~~d~~ilv~d~~~~ 97 (181)
..+ .+.+ ...+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 2222 23557899999999999875
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=4.9e-17 Score=114.95 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=93.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcCCcc-------cccCcc----------ceeEEEEE-----------------
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE----------------- 57 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~t~----------~~~~~~~~----------------- 57 (181)
....+..+|+++|.+|+|||||+++|...... ...+.. +.....+.
T Consensus 25 ~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 25 LRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred hcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence 34456789999999999999999999754210 111100 11111111
Q ss_pred -EcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--C
Q 030187 58 -YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--M 134 (181)
Q Consensus 58 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~ 134 (181)
..+..+.+|||+|+..... .+...++.+++|+|+++.... ... +... .+.|.++++||+|+... .
T Consensus 105 ~~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 105 KFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGA 172 (221)
T ss_dssp GGTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhh
Confidence 1346788999999521110 111357889999998755321 111 1111 24678999999998642 2
Q ss_pred CHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
..+++...+... ..+.+++++||++|.|+++++++|.+.+..
T Consensus 173 ~~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 173 DVEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp CHHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 334333322110 123578999999999999999999987653
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=6.3e-17 Score=133.84 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=85.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC------------Ccc-------cccCccceeEEEEEEc----------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG------------EIV-------TTIPTIGFNVETVEYK---------------- 59 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~------------~~~-------~~~~t~~~~~~~~~~~---------------- 59 (181)
++..+|+++|++++|||||+++|... .+. ....|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45679999999999999999999753 111 1122444444444443
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 131 (181)
+..+++|||||+.+|...+..+++.+|++|+|+|+++..+++....|. .... .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 688999999999999999999999999999999999888887765443 3333 478999999999986
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.68 E-value=5.2e-17 Score=128.78 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=81.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc----cccCccceeEEEEE---------------------------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVE--------------------------------- 57 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~--------------------------------- 57 (181)
....+|+|+|.+|+|||||+|+|.+..+. ...++.........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35589999999999999999999988752 22222211000000
Q ss_pred -----EcC---EEEEEEEcCCCCC-----------ccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC
Q 030187 58 -----YKN---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (181)
Q Consensus 58 -----~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
... ..+.+|||||... +......++..+|++++|+|+++.........++..+ .. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cC
Confidence 000 2589999999764 3455666788999999999998755455555555443 32 36
Q ss_pred CeEEEEEeCCCCCCCCCHhHH
Q 030187 119 AVLLVFANKQDLPNAMNAAEI 139 (181)
Q Consensus 119 ~piivv~nK~D~~~~~~~~~~ 139 (181)
.|+++|+||+|+.......++
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRV 239 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHH
Confidence 789999999998865433333
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=119.19 Aligned_cols=150 Identities=18% Similarity=0.124 Sum_probs=87.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Cc--ccccCccc--------------------eeEE-------E-----
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VTTIPTIG--------------------FNVE-------T----- 55 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~~t~~--------------------~~~~-------~----- 55 (181)
....|+++|+||+|||||+|.|.+. +. ....|+.. ..+. .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999852 10 01111100 0000 0
Q ss_pred ---------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030187 56 ---------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 56 ---------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+...+..+.++||+|.... .......+|.+++|+|++.++..+.... .+ ...|.++++|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 0124568899999995322 2344678999999999976533221111 11 2357799999
Q ss_pred CCCCCCCCCH----hHHHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 127 KQDLPNAMNA----AEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 127 K~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
|+|+...... ..+...+..... .....+++.+||++|.|+++++++|.+.+
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9998643211 122222221100 11134678899999999999999998765
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.65 E-value=9.5e-17 Score=129.39 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=110.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc--CC------------ccc-------ccCccceeEEEEEEcCEEEEEEEcCCCCCccc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL--GE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~--~~------------~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (181)
-||+|+|+.++|||||..+|.. +. +.+ ..-|+......+.+++..++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999952 11 111 12255555566778889999999999999999
Q ss_pred cccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCc------
Q 030187 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGLHS------ 147 (181)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~------ 147 (181)
.....++-+|++|+|+|+.+.=..+. ...|..... .++|.++++||+|....+... ++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999975422222 233444444 378899999999987654322 2222221100
Q ss_pred --------------------------------------------------ccCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 148 --------------------------------------------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 148 --------------------------------------------------~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
....-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001124677899999999999999998866
Q ss_pred h
Q 030187 178 A 178 (181)
Q Consensus 178 ~ 178 (181)
.
T Consensus 238 p 238 (638)
T 3j25_A 238 Y 238 (638)
T ss_dssp C
T ss_pred c
Confidence 4
No 200
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=112.16 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=90.0
Q ss_pred cCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHH---HHhcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030187 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH---RMLNEDE-LRDAVLLVFANK-QDLPNAMNAAEITDK 142 (181)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piivv~nK-~D~~~~~~~~~~~~~ 142 (181)
.+||...+..|..|+.++|++|+|+|++|.+.++ ....+. .++.+.. ..+.|++|+.|| .|++......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4689999999999999999999999999887765 333222 3443322 368999999996 589888899999999
Q ss_pred hCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhcc
Q 030187 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~~ 180 (181)
+++.... +.+.++.|||.+|+|+.|.++||.+.+..|
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 9988774 789999999999999999999999998765
No 201
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=1.4e-14 Score=108.98 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-cc--cCccceeEEEEEEcC-----------------EEEEEEEcCCCCCcc--
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~-- 75 (181)
++|+++|.||+|||||+|+|.+.... .. ..|++.+...+...+ ..+++||+||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986631 11 124443333344332 579999999998753
Q ss_pred --cc---ccccccCccEEEEEEECCC
Q 030187 76 --PL---WRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 76 --~~---~~~~~~~~d~~ilv~d~~~ 96 (181)
.+ +..+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2345789999999999985
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.61 E-value=6.2e-16 Score=111.97 Aligned_cols=117 Identities=12% Similarity=0.001 Sum_probs=68.3
Q ss_pred EEEEEEEcCCCCCcccccc------ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 61 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+.+.+|||||..+...... ..+.. +++++++|+....+.......+..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999876543221 23456 8889999876433333322211111110111367899999999987542
Q ss_pred CHhHHHhhhCC-C----c------------------cc--CcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 135 NAAEITDKLGL-H----S------------------LR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 135 ~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
..+++.+.+.. . . +. ....+++++||+++.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 22111111000 0 0 00 11236789999999999999999988764
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.60 E-value=2.5e-14 Score=116.67 Aligned_cols=113 Identities=19% Similarity=0.106 Sum_probs=80.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC--------C------ccc-------ccCccceeEEEEEEc-------CEEEEEEE
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG--------E------IVT-------TIPTIGFNVETVEYK-------NISFTVWD 67 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~--------~------~~~-------~~~t~~~~~~~~~~~-------~~~~~i~D 67 (181)
+--||+|+|+.++|||||..+|... . +.+ ..-|+......+.+. ++.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3458999999999999999999521 1 111 112444444455553 58999999
Q ss_pred cCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
||||.+|.......++-+|++|+|+|+.+.=..+. ...|..... .++|.++++||+|....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccCc
Confidence 99999999999999999999999999975422222 233444444 48999999999998754
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.60 E-value=1.1e-15 Score=114.72 Aligned_cols=153 Identities=15% Similarity=0.124 Sum_probs=90.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc------CCc--ccccC-ccc------------------ee-EE-E---------
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL------GEI--VTTIP-TIG------------------FN-VE-T--------- 55 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~------~~~--~~~~~-t~~------------------~~-~~-~--------- 55 (181)
..+...|+++|++|+||||+++.+.+ .+. ....+ +.. .. +. .
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 34667899999999999999999953 111 01111 000 00 00 0
Q ss_pred -----------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 56 -----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 56 -----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
+...++.+.+|||||..+.... ....+|++++|+|++..+.++.... .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 0023578999999997654432 3578999999999865433211100 00 14578999
Q ss_pred EeCCCCCCCCCHh----HHHhhhCCCc--ccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 125 ANKQDLPNAMNAA----EITDKLGLHS--LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 125 ~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
+||+|+....... ++...+.... ......+++++||++|.|++++++.|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999987542222 1222111100 0111347889999999999999999988653
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.58 E-value=1.1e-14 Score=118.30 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=94.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcc--cccC-cc-------------------------------------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TI------------------------------------------- 49 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~-t~------------------------------------------- 49 (181)
...+|+|+|.+++|||||+|.|.+..+. ...+ |.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 5579999999999999999999987641 1000 00
Q ss_pred ----ce----eEEEEEE-cCEEEEEEEcCCCCCc-------------cccccccc-cCccEEEEEEECCCcccHHHHHHH
Q 030187 50 ----GF----NVETVEY-KNISFTVWDVGGQDKI-------------RPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDE 106 (181)
Q Consensus 50 ----~~----~~~~~~~-~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~ 106 (181)
++ ....+.. ....+.++||||-... ......++ ..+|++++|+|++....-.....
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~- 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK- 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH-
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH-
Confidence 00 0011112 1245889999995431 12223333 57899999999976433222212
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 107 LHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 107 ~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+...+.. .+.|+++|+||+|+.+.... ..+.. ...........+++.+||++|.|++++++.+.+
T Consensus 209 ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2222332 47899999999999765332 22222 111111112346788999999999999998876
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.57 E-value=1.2e-14 Score=103.00 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=84.1
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhcCCccc-ccCccce----------------eEEEEEEc----------------
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF----------------NVETVEYK---------------- 59 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~----------------~~~~~~~~---------------- 59 (181)
...+.++|+++|.+|+|||||+++|....+.. ..++++. ....+...
T Consensus 34 ~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 34 NKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred HhCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHH
Confidence 34567999999999999999999998653221 1112211 11111100
Q ss_pred ----CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--
Q 030187 60 ----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-- 133 (181)
Q Consensus 60 ----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-- 133 (181)
+..+.++|++|...... .+-...+..+.+.|+........ .+... ...|.++++||+|+.+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~~~iiv~NK~Dl~~~~~ 181 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKTADLIVINKIDLADAVG 181 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTTCSEEEEECGGGHHHHT
T ss_pred HhcCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH------hhcCCEEEEeccccCchhH
Confidence 11455666666321110 11112344556666432111100 00111 13578999999998642
Q ss_pred CCHhHHHhhhCCCcccCcceEEEEecccCCCCHHHHHHHHHHHhhc
Q 030187 134 MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~~ 179 (181)
...+++....... ..+.+++++||++|.|++++|+.|.+.+.+
T Consensus 182 ~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 182 ADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp CCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 2333332222110 123478999999999999999999987754
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.4e-14 Score=105.52 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEcCEEEEEEEcCCCCCcc-------ccccccccCccE
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~ 87 (181)
.+|+++|.||+|||||+|.|.+.... . ...|.......+...+.+++++|+||-.+.. ......+++||+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 48999999999999999999876521 1 2336666677788899999999999953221 113345688999
Q ss_pred EEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 88 LIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 88 ~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
+++|+|++++..- +.+...+... .....+.|.+++.||.|.
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred cccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 9999999875321 2222222111 111234555666677664
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.51 E-value=8e-14 Score=105.29 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCc-ccc--cCccceeEEEEEE---------------------cCEEEEEEEcCCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEY---------------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~-~~~--~~t~~~~~~~~~~---------------------~~~~~~i~D~~G~~~ 73 (181)
++|+++|+||+|||||+|.|.+... ... ..|+..+...... ....+++||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999986531 111 1122222222221 235799999999876
Q ss_pred ccc----c---ccccccCccEEEEEEECCC
Q 030187 74 IRP----L---WRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ~~~----~---~~~~~~~~d~~ilv~d~~~ 96 (181)
+.. + ...+++++|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 2 2345789999999999975
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=8.4e-14 Score=104.33 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=87.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc------CCcc--cccCc-c-------------c-----eeEEE------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL------GEIV--TTIPT-I-------------G-----FNVET------------ 55 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~--~~~~t-~-------------~-----~~~~~------------ 55 (181)
.....++++|++|+|||||++.+.+ ++.. ...++ . + ...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 2211 11110 0 0 00000
Q ss_pred ----------EEEcCEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030187 56 ----------VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 56 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
+...+..+.++||+|..+.. ......+|.+++++|+...+..+...... ...|.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence 11246789999999965432 22346899999999986443221111111 123457778
Q ss_pred eCCCCCCCCC-----HhHHHhhhCCCcc--cCcceEEEEecccCCCCHHHHHHHHHHHh
Q 030187 126 NKQDLPNAMN-----AAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 126 nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
||+|+..... .+++......... .....+++.+||+++.|++++++.|.+..
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999753211 1222222221110 01123577899999999999999988754
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=6.1e-13 Score=98.27 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=73.2
Q ss_pred CCCccccccccccCccEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030187 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~ 146 (181)
++++..+...++.++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+... .+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~--- 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY--- 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence 7888888889999999999999999886 88877777765443 5799999999999875421 12222211
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
+..+++++++||++|.|++++++.+..
T Consensus 139 --~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 139 --RDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp --HHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred --HHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 112457899999999999999987654
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=97.56 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=51.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCCcc-c--ccCccceeEEEEEEc-----------------CEEEEEEEcCCCCCc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~ 74 (181)
+...+|+++|+||+|||||+|.|.+.... . ...|+..+...+... ...+++||+||..++
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 35689999999999999999999987542 1 112344444344332 235999999998765
Q ss_pred cc-------cccccccCccEEEEEEECCCccc
Q 030187 75 RP-------LWRHYFQNTQGLIFVVDSNDRDR 99 (181)
Q Consensus 75 ~~-------~~~~~~~~~d~~ilv~d~~~~~s 99 (181)
.. .+..+++++|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 45677899999999999876443
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.10 E-value=6.7e-10 Score=87.03 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=88.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh------cCCcc--cc---cCc-----------cceeEEEE----------------
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVETV---------------- 56 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~------~~~~~--~~---~~t-----------~~~~~~~~---------------- 56 (181)
.+...|+++|++|+||||++++|. +.+.. .. .+. .++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 33311 10 000 01111110
Q ss_pred -EEcCEEEEEEEcCCCCCccc-ccc---cc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCC
Q 030187 57 -EYKNISFTVWDVGGQDKIRP-LWR---HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQ 128 (181)
Q Consensus 57 -~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~ 128 (181)
...+..+.++||||...... .+. .. ...+|.+++|+|+............+.+ ..|+ .+|+||.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCC
Confidence 11457899999999764321 111 11 1268999999999765332222121211 2454 8899999
Q ss_pred CCCCCCC-HhHHHhhhCCCcc-----cC-cc----eEEEEecccCCCC-HHHHHHHHHHH
Q 030187 129 DLPNAMN-AAEITDKLGLHSL-----RQ-RH----WYIQSTCATSGEG-LYEGLDWLSNN 176 (181)
Q Consensus 129 D~~~~~~-~~~~~~~~~~~~~-----~~-~~----~~~~~~Sa~~~~~-v~~~~~~l~~~ 176 (181)
|...... ...+....+.+.. +. .+ .+.+.+|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9875433 2234444443210 00 00 1223479999999 99999988755
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=8.1e-10 Score=84.04 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=57.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCc--ccccC--ccceeEEEEEEcC-----------------EEEEEEEcCCCCC-
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK- 73 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~- 73 (181)
...+++++|++|+|||||+|.|.+... ....| |+..+...+...+ ..+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999998653 12222 4444444444433 4689999999432
Q ss_pred ------ccccccccccCccEEEEEEECCC
Q 030187 74 ------IRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 74 ------~~~~~~~~~~~~d~~ilv~d~~~ 96 (181)
..+.+...++.+|+++.|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23344556789999999999864
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.97 E-value=4.4e-10 Score=85.17 Aligned_cols=112 Identities=9% Similarity=0.130 Sum_probs=66.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC-----Cc--ccccCccceeEEEEEEcCEEEEEEEcCCCCCcccc--------cccc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG-----EI--VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHY 81 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~-----~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 81 (181)
..+++++|.+|+|||||+|.|.+. .. ....|........+... ..+.++||||-...... ...+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999875 21 12222222222223322 23799999995432211 1111
Q ss_pred c--cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 82 F--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 82 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
+ ...+.+++++++...-.+..+.. +......+.|+++++||.|..+..
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccc
Confidence 1 56899999999842211111100 111222578999999999987643
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=78.49 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=62.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCcccc----------cCccceeEEEEEE--c--CEEEEEEEcCCCCCccc------
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--K--NISFTVWDVGGQDKIRP------ 76 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~------ 76 (181)
.++++++|++|+|||||+|.|.+...... ..+.......+.. . ...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 37899999999999999999976432110 1111111111111 1 24689999998421100
Q ss_pred -c---------------------ccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030187 77 -L---------------------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 77 -~---------------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 133 (181)
. ..-.+..+++.++++|... ..+......+...+.. ..++++|++|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh----cCcEEEEEeccccCCH
Confidence 0 0011224688889998541 2222333333333332 3889999999998764
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.94 E-value=2.5e-10 Score=86.44 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcc
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSL 148 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (181)
.+++|+..+..+.+.++++++|+|++++. ......+.+++ .+.|+++|+||+|+..... .+.+.+.+. ..+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence 46788888999999999999999998642 11111222221 3789999999999975432 112211100 001
Q ss_pred cCcce---EEEEecccCCCCHHHHHHHHHHHh
Q 030187 149 RQRHW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~v~~~~~~l~~~l 177 (181)
+..++ .++.+||++|.|++++++.|.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 11122 688999999999999999987654
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.90 E-value=1.2e-09 Score=82.72 Aligned_cols=116 Identities=9% Similarity=0.098 Sum_probs=66.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC------cccccCccce--eEEEEEEcCEEEEEEEcCCCCCcccc--------cc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE------IVTTIPTIGF--NVETVEYKNISFTVWDVGGQDKIRPL--------WR 79 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~------~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 79 (181)
...+++++|.+|+|||||+|+|.+.. .....+..+. ....+... ..+.++||||-...... ..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34789999999999999999998752 1111111111 11222222 13899999995432211 11
Q ss_pred cc--ccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh
Q 030187 80 HY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA 137 (181)
Q Consensus 80 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~ 137 (181)
.. ....+.++++++....-.+..+.. +......+.|+++++||.|..+....+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~ 292 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLE 292 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHH
Confidence 11 356788899998732211111100 111222578999999999987654333
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.88 E-value=5.2e-10 Score=84.76 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=66.4
Q ss_pred CCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHh---h-hC
Q 030187 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITD---K-LG 144 (181)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~---~-~~ 144 (181)
.+++|++....+++.++++++|+|++++.+ .....+.+.+ .+.|+++|+||+|+..... .+.+.+ . +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478899999988899999999999988753 1111122222 3689999999999976532 121111 1 11
Q ss_pred CCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
.... ....++.+||++|.|++++++.+.+.+.
T Consensus 130 ~~g~--~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGL--CPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTC--CCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCC--CcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1111 1126789999999999999999876543
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=1.1e-08 Score=78.51 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=61.5
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCcccc-----cCccceeEEEEEE--cC--EEEEEEEcCCCCCccc----------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY--KN--ISFTVWDVGGQDKIRP---------- 76 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~--~~--~~~~i~D~~G~~~~~~---------- 76 (181)
..++++++|++|+|||||+|.|.+..+... .+........+.. .. ..+.++|++|......
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 445699999999999999999988653211 1111111111211 22 3689999998543210
Q ss_pred ----cc----cc---------cccC--ccEEE-EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030187 77 ----LW----RH---------YFQN--TQGLI-FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 77 ----~~----~~---------~~~~--~d~~i-lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 134 (181)
.+ .. .... +|+++ ++.|.. .++......+...+. .+.|+++|.||+|...+.
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~--~~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG--HSLKSLDLVTMKKLD----SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC--CCCCHHHHHHHHHHh----hCCCEEEEEcchhccchH
Confidence 00 00 1112 23444 444543 233344444444444 478999999999987653
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.82 E-value=1.4e-08 Score=77.80 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=83.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCCccccc-------CccceeEEEEEEcC-EEEEEEEcCCCCCcccccc-----ccc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-------PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWR-----HYF 82 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~-----~~~ 82 (181)
....++++|++|+|||||+|.+.+-...... ++.. ....+.... ..+.++|++|......... ..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 4568999999999999999999874321111 1100 011122222 2578999998532111111 112
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCC------c
Q 030187 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP---------NAMNAAEITDKLGLH------S 147 (181)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~---------~~~~~~~~~~~~~~~------~ 147 (181)
...+..+. ++... ++..+..+...+.. .+.|+++|.||.|+. +....+++.+.+... .
T Consensus 147 ~~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455554 66642 12223333333332 368999999999863 222223222211110 0
Q ss_pred ccCcceEEEEecc--cCCCCHHHHHHHHHHHhh
Q 030187 148 LRQRHWYIQSTCA--TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~Sa--~~~~~v~~~~~~l~~~l~ 178 (181)
.......++.+|+ .++.|++++.+.+.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 0001124667899 566679999999988764
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=4.9e-09 Score=76.61 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=67.3
Q ss_pred EEEcCCCC-CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030187 65 VWDVGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 65 i~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 143 (181)
+-..|||. .........+.++|+++.|+|+.++.+... ..+.+++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 33467876 455666777899999999999988766542 1122222 378999999999998643333333333
Q ss_pred CCCcccCcceEEEEecccCCCCHHHHHHHHHHHhh
Q 030187 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 178 (181)
. ..+++++.+||+++.|++++++.+.+.+.
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 2 12346788999999999999998877654
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.74 E-value=3.9e-09 Score=76.32 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCCCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~ 73 (181)
++++++|.+|+|||||+|+|.+.......++.+.+. ..+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 699999999999999999999877543333333221 11222 34689999999654
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.66 E-value=1.6e-08 Score=73.88 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=36.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeE--EEEEEcCEEEEEEEcCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~ 72 (181)
....++++++|.||+|||||+|+|.+.......++.+.+. ..+... ..+.++||||-.
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence 3466899999999999999999999876432222222111 112222 368999999964
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.60 E-value=8.6e-09 Score=79.51 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=62.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC------Cc--cccc--------------------------Cccc---eeEEEE-EE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG------EI--VTTI--------------------------PTIG---FNVETV-EY 58 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~------~~--~~~~--------------------------~t~~---~~~~~~-~~ 58 (181)
...|+++|++|+||||+++.|... +. .... .+.+ +....+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999642 11 0000 0000 000000 01
Q ss_pred cCEEEEEEEcCCCCCccccc------cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC-e-EEEEEeCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA-V-LLVFANKQDL 130 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~D~ 130 (181)
.+..+.++||||........ ......+|.+++|+|+..... ....... +. +.. | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~-~~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKA-FK----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHH-HH----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHH-Hh----hcccCCeEEEEeCCCC
Confidence 45679999999976532111 111236899999999864432 1121212 22 234 4 7899999998
Q ss_pred CC
Q 030187 131 PN 132 (181)
Q Consensus 131 ~~ 132 (181)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.41 E-value=3.6e-07 Score=72.91 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=41.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcc-c-----ccCccceeEEEEE---EcCEEEEEEEcCCCCC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-T-----TIPTIGFNVETVE---YKNISFTVWDVGGQDK 73 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~-----~~~t~~~~~~~~~---~~~~~~~i~D~~G~~~ 73 (181)
..+...|+|+|.||+|||||+|+|.+.... . ...|.++..+... ..+..+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 556689999999999999999999987631 1 1223344332222 2457899999999543
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.40 E-value=3.8e-07 Score=70.33 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=64.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc------CCc--cc---cc-----------CccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL------GEI--VT---TI-----------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~------~~~--~~---~~-----------~t~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++..|.. .+. .. .. ...+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999863 211 00 00 0111111110
Q ss_pred EEcCEEEEEEEcCCCCCcccccc------ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030187 57 EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 130 (181)
...++.+.++||+|......... .....+|.+++|+|+............+.+ .-.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~-------~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE-------ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH-------SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh-------hCCCeEEEEECCCC
Confidence 01247899999999654332111 112358999999998754333333222222 12346789999998
Q ss_pred CCC
Q 030187 131 PNA 133 (181)
Q Consensus 131 ~~~ 133 (181)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 754
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.26 E-value=1.3e-06 Score=70.30 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..++|+|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 369999999999999999998753
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.21 E-value=5.6e-07 Score=66.31 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=58.9
Q ss_pred ccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCc
Q 030187 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQR 151 (181)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~ 151 (181)
.+......++|.+++|+|+.+|..-......+...... .++|.++|+||+|+.+... .+.+.+.+. ..
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~ 149 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NI 149 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hC
Confidence 33444678999999999998765444444444333333 5788999999999987533 233433331 12
Q ss_pred ceEEEEecccCCCCHHHHHHH
Q 030187 152 HWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~~~~~ 172 (181)
+++++.+||.++.|++++++.
T Consensus 150 g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp TCCEEECCHHHHTTCTTTGGG
T ss_pred CCeEEEEecCCCCCHHHHHhh
Confidence 335778999999998876653
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.14 E-value=2.7e-07 Score=66.68 Aligned_cols=93 Identities=9% Similarity=0.004 Sum_probs=59.1
Q ss_pred cCCCC-CccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030187 68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
Q Consensus 68 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~ 146 (181)
.|||. .........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+.+.+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 36665 34445666778999999999998775543211 11 1 1 7899999999999865333333332321
Q ss_pred cccCcceEEEEecccCCCCHHHHHHHHHH
Q 030187 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 175 (181)
.+.++ .+||+++.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12345 7999999999998887654
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.13 E-value=8.8e-06 Score=62.69 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=62.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--c---c-----------cCccceeEEE-----------------EE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--T---T-----------IPTIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~------~~~~--~---~-----------~~t~~~~~~~-----------------~~ 57 (181)
...|+++|++|+||||++..|.. .+.. . . ....+..... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999862 2110 0 0 0011111110 00
Q ss_pred EcCEEEEEEEcCCCCC--cccc----ccc--cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030187 58 YKNISFTVWDVGGQDK--IRPL----WRH--YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~--~~~~----~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
..+..+.++||||... .... ... ..-+++.+++|+|+............+.+. -.+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1256788999999654 2111 111 112468999999997544333333333332 234678999999
Q ss_pred CCC
Q 030187 130 LPN 132 (181)
Q Consensus 130 ~~~ 132 (181)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 764
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.10 E-value=2.3e-06 Score=62.84 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=61.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhc------CCcc--ccc---C-----------ccceeEEE-----------------EE
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL------GEIV--TTI---P-----------TIGFNVET-----------------VE 57 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~------~~~~--~~~---~-----------t~~~~~~~-----------------~~ 57 (181)
...++++|++|+||||++..+.. .+.. ... + ..++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 44788999999999999999862 2210 000 0 00111100 01
Q ss_pred EcCEEEEEEEcCCCCC--ccc-ccc-----ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCC
Q 030187 58 YKNISFTVWDVGGQDK--IRP-LWR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 58 ~~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
..++.+.++||||... ... ... .....+|.+++|+|+..... .......+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1456799999999876 321 111 12346899999999864322 2222222211 234 67889999
Q ss_pred CCCC
Q 030187 129 DLPN 132 (181)
Q Consensus 129 D~~~ 132 (181)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9754
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.06 E-value=1.8e-07 Score=73.01 Aligned_cols=93 Identities=28% Similarity=0.293 Sum_probs=54.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcCCcccccCccceeEEEE----EEcCEEEEEEEcCCCC--Cccccc--------c
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV----EYKNISFTVWDVGGQD--KIRPLW--------R 79 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~D~~G~~--~~~~~~--------~ 79 (181)
......|+++|.+|+||||+.++|.........++..+....+ ........+||..|.+ +.+..+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999997543211122221110000 0011344678888873 233333 4
Q ss_pred ccccCccEEEEEEECCCcccHHHHHHHH
Q 030187 80 HYFQNTQGLIFVVDSNDRDRVVEARDEL 107 (181)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~ 107 (181)
.++...++.++|+|.++. +......|+
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~ 142 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIF 142 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHH
Confidence 556667888999999877 444444443
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.93 E-value=1.4e-05 Score=61.72 Aligned_cols=121 Identities=22% Similarity=0.220 Sum_probs=66.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhh-------cCCcc--cccC--------------ccceeEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK-------LGEIV--TTIP--------------TIGFNVET----------------- 55 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~-------~~~~~--~~~~--------------t~~~~~~~----------------- 55 (181)
....|+++|++|+||||++..|. +.+.. ...+ ..++....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678899999999999999886 32210 0000 01111110
Q ss_pred EEEcCEEEEEEEcCCCCCcccc-cc-----ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCC
Q 030187 56 VEYKNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQ 128 (181)
Q Consensus 56 ~~~~~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~ 128 (181)
....++.+.++||||....... .. .....++.+++|+|+............+.. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~--------~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE--------ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHH--------HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhc--------cCCCeEEEEecC
Confidence 0113578999999997654322 11 123468999999998754333222221211 223 34689999
Q ss_pred CCCCCC-CHhHHHhhhC
Q 030187 129 DLPNAM-NAAEITDKLG 144 (181)
Q Consensus 129 D~~~~~-~~~~~~~~~~ 144 (181)
|..... ....+....+
T Consensus 251 D~~~~~g~~l~i~~~~~ 267 (433)
T 2xxa_A 251 DGDARGGAALSIRHITG 267 (433)
T ss_dssp TSSSCCTHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHC
Confidence 986443 2223444444
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.81 E-value=1.7e-05 Score=59.10 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=21.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.--++++|++|+||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.77 E-value=8e-05 Score=55.98 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=52.8
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEE
Q 030187 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...++|.+++|... .|..-......+.-.... .++|.++|+||+|+.++.. .+.+...+. ..+++++.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEE
Confidence 46789999988664 454333333333222222 4678899999999986532 122333222 23445788
Q ss_pred ecccCCCCHHHHHHHH
Q 030187 158 TCATSGEGLYEGLDWL 173 (181)
Q Consensus 158 ~Sa~~~~~v~~~~~~l 173 (181)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887654
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.72 E-value=4.8e-05 Score=58.83 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+..-|.|+|++++|||+|+|+|.+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 44567899999999999999999985
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.70 E-value=0.00018 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.66 E-value=2.5e-05 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.63 E-value=4.9e-05 Score=58.47 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=37.5
Q ss_pred cCEEEEEEEcCCCCCcccc-cc-----ccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 59 KNISFTVWDVGGQDKIRPL-WR-----HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.++.+.++||||....... .. ...-.++.+++|+|+..... .......+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 3567999999997654321 11 11125899999999864322 22222222111 112467889999754
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=2.7e-05 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999753
No 241
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.62 E-value=3.6e-05 Score=54.83 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=21.3
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhh
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+.+......+.-.|+++|++||||||+++.|.
T Consensus 17 ~~~~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ---------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33333444456789999999999999999998
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.58 E-value=3.3e-05 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.51 E-value=4.9e-05 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.++++|++||||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999765
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.49 E-value=5.2e-05 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--++++|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999998753
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.48 E-value=5.4e-05 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|++||||||+++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999753
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.47 E-value=8.1e-05 Score=51.27 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=22.8
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+....--|+++||+|+|||||++.|...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34445668999999999999999999753
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.46 E-value=6.7e-05 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667999999999999999998864
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.45 E-value=6.1e-05 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++++|++|||||||++.+..
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 3588999999999999996543
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.44 E-value=6.6e-05 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--++++|++|||||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998764
No 250
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.43 E-value=8.6e-05 Score=50.16 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=23.9
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+......-.++++|++|+|||||++.+.+.
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3333344578999999999999999888654
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.42 E-value=7e-05 Score=52.53 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--++++||+|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999998763
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.42 E-value=7.3e-05 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.++++|++|+|||||++.+.+-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999998763
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=9.8e-05 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...--|+++||+||||||+++.|...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34567999999999999999999754
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.41 E-value=8.2e-05 Score=50.80 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHhhhhc
Q 030187 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~ 39 (181)
|+|+||+|+|||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999964
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.33 E-value=0.00011 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-|+++|++||||||+++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.33 E-value=0.00011 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999988764
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.32 E-value=0.00014 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-.|+++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999987643
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.32 E-value=0.00012 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+....|+++|++|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.32 E-value=0.00011 Score=49.10 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 260
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.00028 Score=47.54 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+.........-.+++.|++|+|||++++.+...
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444444455678999999999999999988653
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.31 E-value=0.00014 Score=48.50 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCChHHHHhhh
Q 030187 18 MRILMVGLDAAGKTTILYKL 37 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l 37 (181)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.31 E-value=0.00013 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.31 E-value=0.00012 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.28 E-value=0.00014 Score=54.63 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCCc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~~ 42 (181)
.-.++++|++|+|||||+|.|.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999987643
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.28 E-value=0.00015 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 266
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.27 E-value=0.0014 Score=44.83 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=44.8
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~ 132 (181)
.+.+.++|+|+.. .......+..+|.++++...+.. + ......+..+.... ..++.++.+|+|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 4789999999876 33344556779999999987643 3 44444333332211 124567899999999543
No 267
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.26 E-value=0.0065 Score=44.47 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=49.0
Q ss_pred CEEEEEEEcCCCCCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCHhH
Q 030187 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAAE 138 (181)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~~~ 138 (181)
.+.+.++|+|+...... ....+..+|.+++|...+ ..++......+..+.......+.+++ +|+|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 46789999987544322 233457799999999865 44455554444443332222455654 899999843 23344
Q ss_pred HHhhhCCC
Q 030187 139 ITDKLGLH 146 (181)
Q Consensus 139 ~~~~~~~~ 146 (181)
+.+.++..
T Consensus 232 ~~~~~g~~ 239 (307)
T 3end_A 232 FCKETNFR 239 (307)
T ss_dssp HHHHHTCC
T ss_pred HHHHcCCC
Confidence 55555533
No 268
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.00017 Score=49.66 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+....|+++|++||||||+.+.|..
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3345799999999999999998854
No 269
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.26 E-value=0.00019 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++...|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.25 E-value=0.00015 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
No 271
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.25 E-value=0.00021 Score=49.13 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=22.8
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.......|++.|++||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999998864
No 272
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.24 E-value=0.00018 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=21.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhh
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
.+..+-|+++|++|||||||++.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4456789999999999999998884
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.24 E-value=0.0002 Score=48.59 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.23 E-value=0.0002 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.|+++|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 275
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.23 E-value=0.00017 Score=47.90 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-.++++|+.|+|||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44478999999999999999987654
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.22 E-value=0.0002 Score=48.02 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.22 E-value=0.00018 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998765
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.00016 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988764
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.20 E-value=0.00018 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999988764
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.00019 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999988764
No 281
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.19 E-value=0.0002 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.18 E-value=0.00022 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|||||||++.+.+-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999987653
No 283
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.18 E-value=0.00028 Score=47.90 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+...|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999988654
No 284
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.17 E-value=0.0002 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999998764
No 285
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.17 E-value=0.00021 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998764
No 286
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.17 E-value=0.00026 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 287
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.17 E-value=0.00022 Score=49.35 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.||||+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999887764
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.17 E-value=0.00025 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 289
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.17 E-value=0.00036 Score=46.80 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+.........-.+++.|++|+|||+++..+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444444455678999999999999999888643
No 290
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.17 E-value=0.00024 Score=49.32 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
+|++.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999884
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.16 E-value=0.00029 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.4
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
....-.|+++|++||||||+.+.|.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999888643
No 292
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.16 E-value=0.00024 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|||||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.16 E-value=0.00023 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.16 E-value=0.00024 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 295
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.16 E-value=0.00029 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 296
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00024 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.16 E-value=0.00024 Score=48.20 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 298
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.16 E-value=0.0002 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
-...=.++++|++||||||+++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 34445799999999999999998875
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00022 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..=.++|+|++|+|||||++.|.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 445899999999999999998864
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.15 E-value=0.0003 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+....|++.|++||||||+...|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999999853
No 301
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.15 E-value=0.00028 Score=47.70 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|+++|++||||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 302
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.00023 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++||||||+...|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998863
No 303
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.15 E-value=0.00026 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 304
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.00024 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998865
No 305
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.15 E-value=7.7e-05 Score=54.96 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.-.++++|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3589999999999999999998754
No 306
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.15 E-value=0.00026 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 307
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.14 E-value=0.00024 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998764
No 308
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.14 E-value=0.00026 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887653
No 309
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.13 E-value=0.00024 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 36889999999999999988764
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.0003 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 311
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00025 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999987653
No 312
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.12 E-value=0.00025 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.12 E-value=0.00023 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=-++++|++|+|||||++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00027 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 315
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.12 E-value=0.00055 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999998864
No 316
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.11 E-value=0.00022 Score=49.57 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.11 E-value=0.00024 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
-.++++|++|+|||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468999999999999999998754
No 318
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.11 E-value=0.00029 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999998764
No 319
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.11 E-value=0.00027 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999874
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=0.00027 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.10 E-value=0.00026 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~ 38 (181)
.=-++++|++|||||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3468999999999999999887
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.10 E-value=0.00029 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.5
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35567899999999999999998865
No 323
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.09 E-value=0.00032 Score=48.99 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998853
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.09 E-value=0.00016 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=15.8
Q ss_pred cceEEEEcCCCCChHHHHhhhh-cC
Q 030187 17 EMRILMVGLDAAGKTTILYKLK-LG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~-~~ 40 (181)
.--++++|++||||||+++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.08 E-value=0.00037 Score=47.43 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 326
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.08 E-value=0.00028 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 327
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.08 E-value=0.00037 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+...|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 328
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.08 E-value=0.00031 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999998764
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.08 E-value=0.00032 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.07 E-value=0.00029 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887653
No 331
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.07 E-value=0.00036 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhh
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+...|++.|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.06 E-value=0.0003 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36889999999999999998764
No 333
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.06 E-value=0.00036 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.6
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++...|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 455678999999999999999988754
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.06 E-value=0.00038 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
....|+++|++||||||+.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999764
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.05 E-value=0.00036 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.05 E-value=0.00035 Score=47.39 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=22.6
Q ss_pred hccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..++...|+++|.+||||||+.+.|..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 334567899999999999999998864
No 337
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.05 E-value=0.00043 Score=47.85 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 338
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.03 E-value=0.00033 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHhhhh
Q 030187 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~ 38 (181)
.-.++++|++|+|||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999998
No 339
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.03 E-value=0.00041 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhh
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~ 38 (181)
....|++.|++|+||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44679999999999999999886
No 340
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.03 E-value=0.00043 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.03 E-value=0.00044 Score=47.72 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.02 E-value=0.00044 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
No 343
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.02 E-value=0.00038 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-|++.|++||||||+...|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.01 E-value=0.00037 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|+++|++||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988854
No 345
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00042 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 346
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00041 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988754
No 347
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.00 E-value=0.00042 Score=50.67 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.7
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhh
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
......|+|+|++|||||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4566889999999999999998774
No 348
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.00018 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.97 E-value=0.0005 Score=47.19 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+...|++.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998863
No 350
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.97 E-value=0.00033 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.96 E-value=0.00056 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+....|+++|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999987
No 352
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.95 E-value=0.0003 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 47899999999999999988753
No 353
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.92 E-value=0.001 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.+++.|++|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
No 354
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.92 E-value=0.00052 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999887653
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.92 E-value=0.0006 Score=50.17 Aligned_cols=124 Identities=18% Similarity=0.192 Sum_probs=67.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC------Ccc--ccc---C-----------ccceeEEEE-----------------
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV--TTI---P-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~------~~~--~~~---~-----------t~~~~~~~~----------------- 56 (181)
..-.++++|++||||||+++.+.+. +.. ... + ..++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998631 110 000 0 001111000
Q ss_pred EEcCEEEEEEEcCCCCCccccc------------cccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030187 57 EYKNISFTVWDVGGQDKIRPLW------------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~~------------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...+..+.++|++|........ ......++.++++.|+............+.+... ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence 0013456789999965432211 1223457888999998765444333333332222 24788
Q ss_pred EeCCCCCCC-CCHhHHHhhhCCC
Q 030187 125 ANKQDLPNA-MNAAEITDKLGLH 146 (181)
Q Consensus 125 ~nK~D~~~~-~~~~~~~~~~~~~ 146 (181)
+||.|.... -....+....+.+
T Consensus 254 vTh~d~~a~gg~~l~i~~~~~~p 276 (304)
T 1rj9_A 254 VTKLDGTAKGGVLIPIVRTLKVP 276 (304)
T ss_dssp EECTTSSCCCTTHHHHHHHHCCC
T ss_pred EECCcccccccHHHHHHHHHCCC
Confidence 899986543 2334455555543
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.92 E-value=0.00049 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=18.9
Q ss_pred Ccce-EEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMR-ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~-i~v~G~~~~GKssli~~l~~ 39 (181)
...+ |+++|+|||||+|...+|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344 56789999999999998864
No 357
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.91 E-value=0.00048 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999987643
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00057 Score=45.37 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.00062 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 360
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.90 E-value=0.00048 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 361
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.90 E-value=0.00072 Score=50.87 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=22.7
Q ss_pred hhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 11 RLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 11 ~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+......=.++|+|++||||||+++.+.+
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33334444899999999999999998865
No 362
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.89 E-value=0.00048 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999988753
No 363
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00061 Score=47.71 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 364
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.89 E-value=0.00052 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 36799999999999999988764
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.89 E-value=0.00066 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
-..++++|++|||||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
No 366
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.88 E-value=0.00049 Score=50.61 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999864
No 367
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.87 E-value=0.0004 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.1
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988764
No 368
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.87 E-value=0.00041 Score=49.59 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.86 E-value=0.00071 Score=45.82 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.00044 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=16.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999863
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.86 E-value=0.00056 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.++++|++|||||||++.+.+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998764
No 372
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.85 E-value=0.00078 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.0006 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 374
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.85 E-value=0.0006 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999998764
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.84 E-value=0.00054 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.++++|++|||||||++.+.+-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4558999999999999999998764
No 376
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.84 E-value=0.00071 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.84 E-value=0.00025 Score=49.10 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 378
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.84 E-value=0.00061 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 36789999999999999998764
No 379
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.83 E-value=0.00061 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5789999999999999999764
No 380
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.83 E-value=0.00059 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 381
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.82 E-value=0.00072 Score=48.22 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999988854
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.82 E-value=0.00062 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++++|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999873
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.82 E-value=0.0009 Score=50.65 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...=.++++|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999875
No 384
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.00064 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 36789999999999999998764
No 385
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.82 E-value=0.00079 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.5
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
+..+.|++.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999999886
No 386
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.81 E-value=0.00073 Score=45.83 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.00066 Score=48.72 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.81 E-value=0.00069 Score=45.16 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.79 E-value=0.00075 Score=45.56 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|+++|++||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988854
No 390
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.79 E-value=0.0007 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999987643
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.78 E-value=0.00082 Score=45.22 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+...|+++|++||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 392
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.77 E-value=0.00073 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 36789999999999999998764
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.77 E-value=0.00091 Score=47.05 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+..-|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44568999999999999999988764
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.75 E-value=0.0009 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.|++.|.+||||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998853
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.75 E-value=0.0014 Score=50.43 Aligned_cols=31 Identities=35% Similarity=0.481 Sum_probs=23.7
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+........=.++|+|++||||||+++.+.+
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444334444689999999999999999875
No 396
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.0018 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.|++|+|||+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988864
No 397
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.72 E-value=0.00076 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=-++++|++|+|||||+..+.+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.70 E-value=0.001 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhh
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~ 38 (181)
.+.+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
No 399
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.70 E-value=0.00082 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988753
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.69 E-value=0.00082 Score=50.58 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34789999999999999999864
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.69 E-value=0.00058 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 36889999999999999998764
No 402
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.69 E-value=0.0017 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..-.++|+|++||||||+++.+.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446999999999999999998754
No 403
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.69 E-value=0.0009 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999976
No 404
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.68 E-value=0.00088 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999988753
No 405
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.67 E-value=0.012 Score=40.60 Aligned_cols=67 Identities=4% Similarity=-0.075 Sum_probs=43.7
Q ss_pred CEEEEEEEcCCC-CCccccccccccCccEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030187 60 NISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 132 (181)
.+.+.++|+|+. ... .....+..+|.++++...+ ..++......+..+.... +.++.+|+|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 467999999987 432 2344567799999999875 344444444443332211 455889999999764
No 406
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.67 E-value=0.00094 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|||||||++.+.+-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 36899999999999999988763
No 407
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0019 Score=46.70 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.1
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...-.+++.|+||+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999988643
No 408
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.66 E-value=0.0011 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....|++.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 557899999999999999998864
No 409
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.65 E-value=0.002 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988764
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.64 E-value=0.0017 Score=44.99 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....|+++|++|+||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998864
No 411
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.63 E-value=0.0015 Score=47.05 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.9
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
......+++.|++|+|||++...+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999988653
No 412
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.001 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.--++++|++|+|||||+..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999976
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.62 E-value=0.0011 Score=47.51 Aligned_cols=31 Identities=29% Similarity=0.198 Sum_probs=22.2
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+....++...|++.|..||||||+++.|...
T Consensus 17 ~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 17 ASSEGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ------CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccccccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3344456688999999999999999988754
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.61 E-value=0.00099 Score=52.13 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.++++|++|+||||+++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34799999999999999999864
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.61 E-value=0.001 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998854
No 416
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.58 E-value=0.00056 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 367899999999999999987643
No 417
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.57 E-value=0.0012 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.3
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999998865
No 418
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.57 E-value=0.0018 Score=42.01 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
......|++.|++|+|||++...+...
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 356678999999999999999988654
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.55 E-value=0.0013 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 420
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.53 E-value=0.0014 Score=44.92 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.++.|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 421
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.52 E-value=0.0011 Score=49.12 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5689999999999999999854
No 422
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0012 Score=51.42 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
...-.++|+|+.|||||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 355689999999999999999987643
No 423
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.51 E-value=0.0027 Score=49.49 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+..-......-+++++|+||+|||++++.+...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444444456678999999999999999888643
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0019 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+...|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999998864
No 425
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.47 E-value=0.0015 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.4
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
+.=+++++|++|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998753
No 426
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.46 E-value=0.0016 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999988843
No 427
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0022 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998866
No 428
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.003 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999988653
No 429
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.42 E-value=0.003 Score=46.23 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.8
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
...-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567999999999999999988753
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.42 E-value=0.0016 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445899999999999999998875
No 431
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.42 E-value=0.003 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.3
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....+|+++|++|+||||+...|..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34456899999999999999987753
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.41 E-value=0.0035 Score=45.77 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.6
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....+++.|+||+|||++...+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999976643
No 433
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.41 E-value=0.0016 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 434
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.40 E-value=0.0028 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+++.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 435
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.38 E-value=0.0023 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+.++.++|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 436
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.37 E-value=0.0037 Score=48.33 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=37.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc------------------CCcc---c-ccCccceeEEE--E--EE---cCEEEE
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL------------------GEIV---T-TIPTIGFNVET--V--EY---KNISFT 64 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~------------------~~~~---~-~~~t~~~~~~~--~--~~---~~~~~~ 64 (181)
.....-|.|+|+.++|||+|+|.+.. ..|. + ..-|.|+-.+. + .. .++.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 44556777999999999999996531 1121 1 12255654432 2 11 247799
Q ss_pred EEEcCCCCC
Q 030187 65 VWDVGGQDK 73 (181)
Q Consensus 65 i~D~~G~~~ 73 (181)
+.||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999543
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.37 E-value=0.0012 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.3
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++.+-|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999988853
No 438
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.34 E-value=0.002 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
--+++.|++|+|||+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 439
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.002 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
--++++|++|+|||||+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999988775
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.33 E-value=0.002 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 37899999999999999988764
No 441
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.32 E-value=0.0023 Score=41.48 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.....|++.|++|+|||++...+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45578999999999999999877654
No 442
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.32 E-value=0.0022 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++-+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 443
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.32 E-value=0.0026 Score=46.55 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.2
Q ss_pred CcceEEEEcCCCCChHHHHhhhh
Q 030187 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~ 38 (181)
..-.++++|++|+||||++..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45589999999999999999885
No 444
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.31 E-value=0.0026 Score=46.45 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=19.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-+++.|+||+|||++...+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999998864
No 445
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.30 E-value=0.0021 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHhhhhcC
Q 030187 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~ 40 (181)
-++++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998764
No 446
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.29 E-value=0.002 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
=.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999998864
No 447
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.29 E-value=0.0021 Score=47.30 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=19.7
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.|+++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999998853
No 448
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.28 E-value=0.003 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.+++.|+||+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 449
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.28 E-value=0.0029 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
..-.+++.|+||+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 450
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.28 E-value=0.002 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 47899999999999999988754
No 451
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.27 E-value=0.0022 Score=49.56 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=22.0
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcCC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
+.=+++++|++|+|||||++.+.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44589999999999999999887653
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.27 E-value=0.0021 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.--+.++|++|+|||||+..+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998753
No 453
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.27 E-value=0.0046 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987764
No 454
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.25 E-value=0.0023 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988764
No 455
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0042 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988654
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.24 E-value=0.0025 Score=41.73 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.3
Q ss_pred eEEEEcCCCCChHHHHhhhh
Q 030187 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~ 38 (181)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35799999999999998874
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.24 E-value=0.0027 Score=43.49 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHhhhhc
Q 030187 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~ 39 (181)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 458
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0023 Score=47.29 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=24.1
Q ss_pred hhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 12 LFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 12 ~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
......-.+.+.|+||+|||++++.+...
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34557789999999999999999988643
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.21 E-value=0.0034 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.8
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-|+++|++||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446788999999999999999875
No 460
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.19 E-value=0.0021 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999988764
No 461
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.19 E-value=0.0029 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|++||||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988854
No 462
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0026 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|+.|+|||||++-+.+-
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36899999999999999998764
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.18 E-value=0.003 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhcCC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
..-|+++|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999997553
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.17 E-value=0.0024 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999988764
No 465
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.16 E-value=0.0026 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-.+++.|++|+|||+|++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999998865
No 466
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.005 Score=47.49 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=24.3
Q ss_pred HhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.+.-....-.|++.||||+|||++...+.+.
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3333445668999999999999999988753
No 467
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.13 E-value=0.0027 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
=.++++|++|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999988753
No 468
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.08 E-value=0.0034 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++-+.+-.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 468999999999999999987643
No 469
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.08 E-value=0.0077 Score=43.32 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=23.9
Q ss_pred HHHhhhccC---cceEEEEcCCCCChHHHHhhhhc
Q 030187 8 LFSRLFAKK---EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 8 ~~~~~~~~~---~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.+..+.++. .-.|++.||||+|||.|+..+..
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344444443 23599999999999999998875
No 470
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.08 E-value=0.0033 Score=46.52 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988864
No 471
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.07 E-value=0.0068 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
-.+++.|+||+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999988864
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.07 E-value=0.0034 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988864
No 473
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.003 Score=47.32 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.4
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...-.+++.|++|+|||||++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0059 Score=47.11 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=24.9
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+.+.-....--|++.||||+|||+|...+.+.
T Consensus 207 f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 207 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33344455678999999999999999988753
No 475
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0058 Score=47.04 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=21.8
Q ss_pred ccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+--|++.||||+|||+++..+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34445699999999999999998875
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.0033 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHhhhhcCC
Q 030187 19 RILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 19 ~i~v~G~~~~GKssli~~l~~~~ 41 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.04 E-value=0.0039 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHhhhhcC
Q 030187 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~ 40 (181)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999754
No 478
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.02 E-value=0.0042 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
-.+++.|++|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999888653
No 479
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.01 E-value=0.0043 Score=45.17 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCChHHHHhhhhc
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
....+++.|+||+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.99 E-value=0.004 Score=49.45 Aligned_cols=24 Identities=38% Similarity=0.297 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.96 E-value=0.0074 Score=49.84 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHHHHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.++.........-.++++|++|+|||++++.+..
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 34445555556778999999999999999988864
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0064 Score=46.37 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHhhhccCcceEEEEcCCCCChHHHHhhhhc
Q 030187 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 9 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
+.+.-....--|++.||||+|||.|...+.+
T Consensus 174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 174 FESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4444445567899999999999999998875
No 483
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.96 E-value=0.004 Score=46.97 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHhhhh
Q 030187 20 ILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~ 38 (181)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999875
No 484
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.93 E-value=0.0075 Score=49.83 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=26.5
Q ss_pred HHHHHhhhccCcceEEEEcCCCCChHHHHhhhhcC
Q 030187 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.++..-......-+++++|+||+|||++++.+...
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34444444566678999999999999999888643
No 485
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.93 E-value=0.0049 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45889999999999999999643
No 486
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.93 E-value=0.0041 Score=47.50 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCChHHHHhhhh
Q 030187 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~ 38 (181)
--++|+|++|+|||||+..++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 368999999999999999875
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.92 E-value=0.005 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 488
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.92 E-value=0.0044 Score=49.90 Aligned_cols=24 Identities=38% Similarity=0.297 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcCC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~~ 41 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.91 E-value=0.003 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+++.|++|+|||+++..+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999998864
No 490
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.88 E-value=0.0042 Score=45.99 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHhhhhcC
Q 030187 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-.|++.|+||+|||+++..+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999988753
No 491
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.88 E-value=0.0047 Score=43.41 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=18.7
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++..-|++.|++||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 492
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.88 E-value=0.0061 Score=45.39 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
.-|+|+|++|+|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998653
No 493
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.86 E-value=0.0062 Score=43.08 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++..-|++.|++||||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 494
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0045 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHhhhhcCC
Q 030187 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~v~G~~~~GKssli~~l~~~~ 41 (181)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.84 E-value=0.0059 Score=42.47 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.9
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
++..-|++-|++||||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3466899999999999999998853
No 496
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.83 E-value=0.005 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHhhhhc
Q 030187 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~ 39 (181)
.-|+|+||+|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578999999999999999964
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.80 E-value=0.01 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.2
Q ss_pred cCcceEEEEcCCCCChHHHHhhhhc
Q 030187 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~v~G~~~~GKssli~~l~~ 39 (181)
.....+++.|++|+|||++++.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3445799999999999999998854
No 498
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.01 Score=43.45 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHhhhhcC
Q 030187 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~v~G~~~~GKssli~~l~~~ 40 (181)
..+++.|++|+|||+++..+...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999888654
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.78 E-value=0.0035 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.7
Q ss_pred CcceEEEEcCCCCChHHHHhhhhcC
Q 030187 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~v~G~~~~GKssli~~l~~~ 40 (181)
+...|+++|++|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 5568999999999999999988654
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.77 E-value=0.0065 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHhhhhc
Q 030187 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~v~G~~~~GKssli~~l~~ 39 (181)
...+++.|+||+|||+++..+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998864
Done!