BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030189
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSI|A Chain A, Crystal Structure Of Yeast Fad Synthetase (Fad1) In
Complex With Fad
Length = 306
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 37 EVAFSFNGGKDSTVLLHLLRAG---YFLHKGEQSCSNGSL-TFPIR---TIYFESNSAFP 89
E++FS+NGGKD VLL L + YF K + S + +FP++ T++ + FP
Sbjct: 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFP 114
Query: 90 EINSFTYDTASKYVLQLDIIRSDFKSG--------LEALLNAKP-IRAIFLGVRIGDPTA 140
+ +F +T+ +Y L L S +SG + P AI +G+R DP
Sbjct: 115 TLENFVLETSERYCLSL--YESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFG 172
Query: 141 VGQEQFSPSSPGWPPFMRVNPILD------WSYRLLINNKLFGFIG 180
+ + WP FMR+ P+L WS+ L N + G G
Sbjct: 173 EALKPIQRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPICGLYG 218
>pdb|3FWK|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase
pdb|3G59|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Atp
pdb|3G5A|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G6K|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
Length = 308
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 37 EVAFSFNGGKDSTVLLHLLRAG---YFLHKGEQSCSNGSLT-FPIR---TIYFESNSAFP 89
E++FS+NGGKD VLL L + Y++ K QS +G FP+ T++ + + F
Sbjct: 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFK 119
Query: 90 EINSFTYDTASKYVLQLDIIRSD----FKSGLEALLNAKP-IRAIFLGVRIGDPTAVGQE 144
+ +F +T+ +Y L L D E L P +AI +G+R DP +
Sbjct: 120 TLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLK 179
Query: 145 QFSPSSPGWPPFMRVNPILDWS 166
+ WP F R+ P+L W+
Sbjct: 180 PIQKTDANWPDFYRLQPLLHWN 201
>pdb|1ZUN|A Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 325
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 58/161 (36%), Gaps = 52/161 (32%)
Query: 31 ALYSIEEVAFSFNG-------GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTI--- 80
+++ I EVA F+ GKDS V LHL R +F G L FP+ +
Sbjct: 35 SIHIIREVAAEFDNPVXLYSIGKDSAVXLHLARKAFF---------PGKLPFPVXHVDTR 85
Query: 81 -----------------------YFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKSGL 117
+ + IN FT+ +A DI +++ GL
Sbjct: 86 WKFQEXYRFRDQXVEEXGLDLITHINPDGVAQGINPFTHGSAK----HTDIXKTE---GL 138
Query: 118 EALLNAKPIRAIFLGVRIGDPTAVGQEQ---FSPSSPGWPP 155
+ L+ A F G R + + +E+ F S W P
Sbjct: 139 KQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDP 179
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 123 AKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMR-VNPILDWSYRLLI 171
K +R F GD T V P + GW F R ++P+++ YR+++
Sbjct: 22 GKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVIL 71
>pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli
Length = 433
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 32 LYSIEEVAFSFNGGKDSTVLLHLL 55
L + ++ +F+GG DSTVLLH L
Sbjct: 10 LLTSRQILVAFSGGLDSTVLLHQL 33
>pdb|2YIU|B Chain B, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|E Chain E, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 263
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 31 ALYSIEEVAFSFNG--GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF 88
A IE+++FSF G GK H L+ G ++ S +G P+RT+ E
Sbjct: 24 AAAHIEDISFSFEGPFGKFDQ---HQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQL 80
Query: 89 PEINSFTYDTASKYVLQLDI 108
PE D Y DI
Sbjct: 81 PE------DQVRAYAANFDI 94
>pdb|1N1C|A Chain A, Crystal Structure Of The Dimeric Tord Chaperone From
Shewanella Massilia
pdb|1N1C|B Chain B, Crystal Structure Of The Dimeric Tord Chaperone From
Shewanella Massilia
Length = 217
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 8 RESDDRRLKTKYNNAINVIQRTLAL-----YSIEEVAFSFNGGKDSTVLLHLLR--AGYF 60
RE D++RLK + A L+L S++++ + NG KD LL L G F
Sbjct: 23 REVDEQRLKELTSEAAQQFWEQLSLEANFTQSVDKIRSTLNGIKDDEALLELAADYCGLF 82
Query: 61 L 61
L
Sbjct: 83 L 83
>pdb|3HQ2|A Chain A, Bsucp Crystal Structure
pdb|3HQ2|B Chain B, Bsucp Crystal Structure
Length = 501
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 27 QRTLALYSIEEVAFSFNGGK-DSTV 50
Q+ L+LY ++E+ + F+GG+ D TV
Sbjct: 209 QKELSLYFLQELGYDFDGGRLDETV 233
>pdb|2I52|A Chain A, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|B Chain B, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|C Chain C, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|D Chain D, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|E Chain E, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
pdb|2I52|F Chain F, Crystal Structure Of Protein Pto0218 From Picrophilus
Torridus, Pfam Duf372
Length = 121
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 96 YDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIF---LGVRIGDPTAVGQEQFSPSSPG 152
YD A KY DI R+ F++G++ + AIF G+ + A E+F S
Sbjct: 3 YDPAEKYFNCTDIQRAFFEAGIK-------LGAIFHQYTGIPVNSENASMAEEFIERSTM 55
Query: 153 WPPFMRVNPILDWSYRLLINN 173
PF+ + R+ INN
Sbjct: 56 IQPFVE-------NVRISINN 69
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 55 LRAGYFLHKGEQSCSNGSL 73
RAGY LH+ +++CS SL
Sbjct: 152 CRAGYVLHRNKRTCSEQSL 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,319,225
Number of Sequences: 62578
Number of extensions: 208883
Number of successful extensions: 406
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 10
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)