Query 030189
Match_columns 181
No_of_seqs 128 out of 1255
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12563 sulfate adenylyltrans 100.0 2.5E-35 5.4E-40 243.6 17.3 155 13-180 17-214 (312)
2 TIGR02057 PAPS_reductase phosp 100.0 1.1E-33 2.3E-38 226.3 16.8 143 21-180 12-183 (226)
3 TIGR00434 cysH phosophoadenyly 100.0 1.7E-33 3.6E-38 223.1 15.9 140 23-180 2-168 (212)
4 TIGR02039 CysD sulfate adenyly 100.0 2.3E-33 5.1E-38 230.9 16.5 153 15-180 1-196 (294)
5 PRK05253 sulfate adenylyltrans 100.0 8.3E-33 1.8E-37 229.0 17.9 155 13-180 7-204 (301)
6 COG0175 CysH 3'-phosphoadenosi 100.0 2.2E-32 4.8E-37 222.9 16.5 152 12-179 16-194 (261)
7 PRK08557 hypothetical protein; 100.0 1.2E-31 2.7E-36 230.2 18.7 162 3-180 148-337 (417)
8 PRK13794 hypothetical protein; 100.0 1.2E-31 2.6E-36 234.6 18.7 162 3-180 217-403 (479)
9 PRK02090 phosphoadenosine phos 100.0 2.2E-31 4.8E-36 214.9 15.2 138 21-180 27-193 (241)
10 PF01507 PAPS_reduct: Phosphoa 100.0 1.3E-30 2.8E-35 199.0 12.6 128 37-179 1-153 (174)
11 PRK13795 hypothetical protein; 100.0 5.8E-30 1.3E-34 230.7 18.4 161 3-180 213-399 (636)
12 PLN02309 5'-adenylylsulfate re 100.0 6.1E-29 1.3E-33 215.4 16.8 146 15-179 89-272 (457)
13 TIGR00424 APS_reduc 5'-adenyly 100.0 1.3E-28 2.8E-33 213.6 16.3 140 21-179 102-277 (463)
14 cd01713 PAPS_reductase This do 100.0 1.6E-27 3.5E-32 180.3 14.3 132 37-180 1-160 (173)
15 PRK08576 hypothetical protein; 99.9 4E-26 8.8E-31 196.8 17.7 151 11-180 214-386 (438)
16 TIGR02055 APS_reductase thiore 99.9 4.8E-26 1E-30 177.9 12.5 118 44-180 1-147 (191)
17 PRK06850 hypothetical protein; 99.9 1.7E-24 3.6E-29 189.1 16.6 157 16-179 16-221 (507)
18 TIGR03183 DNA_S_dndC putative 99.9 3.7E-24 8.1E-29 184.9 15.3 149 24-179 3-202 (447)
19 KOG0189 Phosphoadenosine phosp 99.9 6.4E-23 1.4E-27 158.3 11.4 147 14-179 24-202 (261)
20 COG3969 Predicted phosphoadeno 99.8 1.2E-18 2.6E-23 143.7 14.5 150 19-180 13-231 (407)
21 KOG2644 3'-phosphoadenosine 5' 99.8 5.9E-19 1.3E-23 142.6 6.5 154 23-179 64-226 (282)
22 cd01992 PP-ATPase N-terminal d 99.8 1.5E-17 3.2E-22 128.5 14.0 133 37-180 1-162 (185)
23 TIGR02432 lysidine_TilS_N tRNA 99.8 2E-17 4.3E-22 128.4 13.6 133 37-180 1-166 (189)
24 cd01993 Alpha_ANH_like_II This 99.7 6.1E-17 1.3E-21 124.7 13.4 135 37-180 1-173 (185)
25 PRK10696 tRNA 2-thiocytidine b 99.7 4.3E-16 9.4E-21 126.9 14.6 149 21-180 11-196 (258)
26 PF01171 ATP_bind_3: PP-loop f 99.7 4.1E-16 8.8E-21 120.7 10.3 133 37-181 1-163 (182)
27 COG0037 MesJ tRNA(Ile)-lysidin 99.6 2E-14 4.3E-19 118.8 15.2 131 36-180 22-187 (298)
28 cd01990 Alpha_ANH_like_I This 99.6 6.6E-14 1.4E-18 109.8 12.2 124 38-180 1-147 (202)
29 PRK00919 GMP synthase subunit 99.5 1E-12 2.2E-17 109.4 15.6 147 15-179 4-177 (307)
30 PRK00074 guaA GMP synthase; Re 99.5 5.1E-13 1.1E-17 118.4 14.5 151 13-180 196-380 (511)
31 TIGR00268 conserved hypothetic 99.5 8.7E-13 1.9E-17 107.2 13.9 133 24-180 3-159 (252)
32 PRK10660 tilS tRNA(Ile)-lysidi 99.5 6.1E-13 1.3E-17 115.9 13.1 132 36-180 16-176 (436)
33 cd01995 ExsB ExsB is a transcr 99.5 1E-12 2.2E-17 100.3 12.3 126 37-179 1-138 (169)
34 TIGR00884 guaA_Cterm GMP synth 99.5 3.5E-12 7.6E-17 106.6 15.5 144 19-179 3-179 (311)
35 cd01712 ThiI ThiI is required 99.4 6.1E-12 1.3E-16 96.8 12.5 125 37-179 1-156 (177)
36 PRK14561 hypothetical protein; 99.4 9.6E-12 2.1E-16 97.4 12.5 121 37-178 2-147 (194)
37 cd01997 GMP_synthase_C The C-t 99.4 1.1E-11 2.4E-16 102.8 13.1 129 37-179 1-164 (295)
38 PRK00143 mnmA tRNA-specific 2- 99.3 3.5E-11 7.6E-16 102.0 13.3 127 37-180 2-181 (346)
39 PRK08349 hypothetical protein; 99.3 1.8E-11 3.9E-16 96.0 10.5 125 37-178 2-157 (198)
40 TIGR00420 trmU tRNA (5-methyla 99.3 7.1E-11 1.5E-15 100.3 13.0 129 37-180 2-185 (352)
41 COG1606 ATP-utilizing enzymes 99.3 6.4E-11 1.4E-15 95.0 10.8 101 23-139 7-127 (269)
42 cd01998 tRNA_Me_trans tRNA met 99.2 2.4E-10 5.2E-15 97.0 14.0 128 37-179 1-181 (349)
43 cd01996 Alpha_ANH_like_III Thi 99.2 8.2E-11 1.8E-15 88.3 9.8 88 37-139 3-116 (154)
44 TIGR00552 nadE NAD+ synthetase 99.2 4.2E-10 9E-15 91.4 14.5 139 20-179 7-175 (250)
45 cd00553 NAD_synthase NAD+ synt 99.2 6.8E-10 1.5E-14 90.0 14.9 144 16-179 4-177 (248)
46 PRK13980 NAD synthetase; Provi 99.2 8.8E-10 1.9E-14 90.2 14.9 143 16-178 11-178 (265)
47 PLN02347 GMP synthetase 99.2 6.2E-10 1.3E-14 99.1 14.9 149 15-179 211-403 (536)
48 TIGR00364 exsB protein. This p 99.2 3.9E-10 8.4E-15 88.5 11.3 125 38-178 1-172 (201)
49 PRK14665 mnmA tRNA-specific 2- 99.2 1E-09 2.2E-14 93.4 13.9 128 36-178 6-179 (360)
50 PRK08384 thiamine biosynthesis 99.1 3.7E-10 7.9E-15 96.7 10.4 121 36-178 181-336 (381)
51 cd01999 Argininosuccinate_Synt 99.1 7.4E-10 1.6E-14 95.0 11.7 122 38-180 1-162 (385)
52 TIGR00342 thiazole biosynthesi 99.1 5.9E-10 1.3E-14 95.4 10.2 124 36-178 173-327 (371)
53 cd01986 Alpha_ANH_like Adenine 99.1 6.7E-10 1.5E-14 78.2 8.5 72 38-138 1-74 (103)
54 PRK00509 argininosuccinate syn 99.1 1.3E-09 2.8E-14 93.7 11.6 123 36-180 3-165 (399)
55 PRK13820 argininosuccinate syn 99.1 1.9E-09 4.2E-14 92.6 12.1 122 36-180 3-162 (394)
56 TIGR03573 WbuX N-acetyl sugar 99.1 3E-09 6.5E-14 90.1 13.0 87 37-137 61-172 (343)
57 TIGR00032 argG argininosuccina 99.1 2.4E-09 5.3E-14 92.1 12.0 124 37-180 1-161 (394)
58 cd01994 Alpha_ANH_like_IV This 99.0 9.9E-10 2.2E-14 86.1 8.7 119 37-175 1-134 (194)
59 PLN00200 argininosuccinate syn 99.0 2.8E-09 6E-14 91.8 11.2 123 36-179 6-168 (404)
60 PRK14664 tRNA-specific 2-thiou 99.0 7.1E-09 1.5E-13 88.3 12.0 126 36-179 6-175 (362)
61 PRK11106 queuosine biosynthesi 98.9 2.9E-08 6.3E-13 79.8 13.2 126 36-178 2-176 (231)
62 PRK01565 thiamine biosynthesis 98.9 9E-09 1.9E-13 88.8 10.8 124 36-178 177-331 (394)
63 PTZ00323 NAD+ synthase; Provis 98.9 1.2E-07 2.5E-12 78.8 15.8 155 8-177 19-208 (294)
64 PRK04527 argininosuccinate syn 98.8 3.1E-08 6.8E-13 85.1 11.1 122 36-179 3-166 (400)
65 PRK01269 tRNA s(4)U8 sulfurtra 98.8 2.4E-08 5.2E-13 88.2 9.9 127 36-178 178-332 (482)
66 PF02540 NAD_synthase: NAD syn 98.8 8.7E-08 1.9E-12 77.6 12.3 138 20-178 3-167 (242)
67 PF06508 QueC: Queuosine biosy 98.8 6.1E-08 1.3E-12 76.8 11.1 124 37-177 1-173 (209)
68 TIGR03679 arCOG00187 arCOG0018 98.8 2.8E-08 6E-13 79.2 7.5 117 39-175 1-132 (218)
69 COG0519 GuaA GMP synthase, PP- 98.6 9.7E-07 2.1E-11 72.0 12.1 142 16-174 5-178 (315)
70 PRK00768 nadE NAD synthetase; 98.6 2.1E-06 4.5E-11 70.4 14.1 159 8-178 11-198 (268)
71 PF03054 tRNA_Me_trans: tRNA m 98.6 5.7E-07 1.2E-11 76.5 10.7 128 37-179 2-185 (356)
72 PRK00876 nadE NAD synthetase; 98.5 7.8E-07 1.7E-11 74.9 10.7 84 15-111 12-96 (326)
73 cd01991 Asn_Synthase_B_C The C 98.5 1.2E-06 2.6E-11 71.1 10.8 91 35-139 15-130 (269)
74 COG2117 Predicted subunit of t 98.5 4.7E-07 1E-11 68.3 6.5 117 37-175 2-146 (198)
75 PF02568 ThiI: Thiamine biosyn 98.4 1.1E-06 2.4E-11 68.9 8.5 122 36-176 4-158 (197)
76 COG0603 Predicted PP-loop supe 98.3 1E-05 2.2E-10 64.4 11.1 124 36-176 3-175 (222)
77 COG0482 TrmU Predicted tRNA(5- 98.3 1.7E-05 3.6E-10 67.2 12.7 128 36-178 4-182 (356)
78 TIGR00289 conserved hypothetic 98.2 6.8E-06 1.5E-10 65.7 8.5 117 37-174 2-130 (222)
79 TIGR00290 MJ0570_dom MJ0570-re 98.2 1.2E-05 2.7E-10 64.2 9.8 117 37-172 2-128 (223)
80 TIGR01536 asn_synth_AEB aspara 98.2 2.6E-05 5.5E-10 68.7 12.7 90 36-139 254-370 (467)
81 PRK13981 NAD synthetase; Provi 98.2 6.7E-05 1.4E-09 67.3 15.6 83 15-110 260-342 (540)
82 PF00733 Asn_synthase: Asparag 98.2 7.6E-06 1.7E-10 65.2 8.6 90 35-138 17-133 (255)
83 PRK02628 nadE NAD synthetase; 98.2 1.8E-05 3.8E-10 72.9 11.2 147 16-177 342-521 (679)
84 cd01984 AANH_like Adenine nucl 98.1 1.7E-05 3.7E-10 53.5 6.5 61 38-138 1-61 (86)
85 KOG2805 tRNA (5-methylaminomet 98.0 9.6E-05 2.1E-09 61.4 11.8 127 35-176 5-188 (377)
86 PRK05370 argininosuccinate syn 98.0 9.8E-05 2.1E-09 64.2 11.1 126 34-180 10-182 (447)
87 KOG1622 GMP synthase [Nucleoti 98.0 5.8E-05 1.3E-09 65.3 9.2 85 10-111 208-293 (552)
88 PF00764 Arginosuc_synth: Argi 97.8 3.1E-05 6.7E-10 66.5 5.7 121 39-180 1-160 (388)
89 COG0301 ThiI Thiamine biosynth 97.7 0.00024 5.2E-09 60.9 9.5 122 36-176 176-329 (383)
90 PF01902 ATP_bind_4: ATP-bindi 97.7 0.0001 2.2E-09 58.9 5.7 115 37-172 2-128 (218)
91 COG0137 ArgG Argininosuccinate 97.4 0.0046 1E-07 52.9 12.6 126 36-180 5-167 (403)
92 PRK09431 asnB asparagine synth 97.3 0.0036 7.7E-08 56.5 11.7 115 21-139 211-355 (554)
93 PLN02549 asparagine synthase ( 97.3 0.0021 4.5E-08 58.3 10.2 96 36-139 226-349 (578)
94 COG0171 NadE NAD synthase [Coe 97.3 0.0025 5.5E-08 52.4 9.6 147 14-177 4-182 (268)
95 PTZ00077 asparagine synthetase 97.3 0.0034 7.3E-08 57.1 11.1 113 23-140 223-364 (586)
96 TIGR03108 eps_aminotran_1 exos 97.2 0.0041 8.9E-08 56.8 11.4 106 18-139 239-371 (628)
97 COG0367 AsnB Asparagine syntha 97.2 0.0036 7.8E-08 56.4 10.5 110 15-139 208-346 (542)
98 TIGR03104 trio_amidotrans aspa 97.2 0.0047 1E-07 56.1 11.3 103 22-140 245-378 (589)
99 COG2102 Predicted ATPases of P 97.0 0.0049 1.1E-07 49.1 8.5 116 37-171 2-128 (223)
100 COG1365 Predicted ATPase (PP-l 97.0 0.002 4.3E-08 51.0 6.1 82 36-137 61-166 (255)
101 KOG2840 Uncharacterized conser 96.9 0.0025 5.3E-08 53.4 6.2 133 36-177 52-229 (347)
102 PLN02339 NAD+ synthase (glutam 96.2 0.054 1.2E-06 50.3 10.4 86 24-110 337-446 (700)
103 cd01987 USP_OKCHK USP domain i 95.8 0.35 7.5E-06 34.0 11.3 91 37-138 1-98 (124)
104 KOG2594 Uncharacterized conser 95.4 0.11 2.3E-06 44.3 8.3 65 116-180 187-264 (396)
105 cd00293 USP_Like Usp: Universa 95.3 0.59 1.3E-05 32.2 10.9 91 37-138 1-106 (130)
106 cd01988 Na_H_Antiporter_C The 94.7 0.93 2E-05 31.8 10.7 92 37-139 1-108 (132)
107 KOG0573 Asparagine synthase [A 93.7 0.084 1.8E-06 46.2 4.0 25 36-60 251-275 (520)
108 KOG0571 Asparagine synthase (g 93.0 1.6 3.5E-05 38.3 10.6 94 36-139 226-347 (543)
109 PRK10490 sensor protein KdpD; 92.8 3 6.5E-05 40.0 13.3 89 36-136 251-347 (895)
110 PRK09982 universal stress prot 90.6 5.1 0.00011 29.0 9.9 89 36-135 4-113 (142)
111 cd01989 STK_N The N-terminal d 90.1 5.5 0.00012 28.6 10.2 91 37-138 1-116 (146)
112 COG2205 KdpD Osmosensitive K+ 89.2 5 0.00011 38.0 10.5 91 36-137 249-346 (890)
113 PRK15118 universal stress glob 89.2 6.5 0.00014 28.2 10.2 89 36-135 4-113 (144)
114 PRK10116 universal stress prot 88.3 7.5 0.00016 27.7 10.5 92 36-138 4-115 (142)
115 PF00582 Usp: Universal stress 85.4 9.6 0.00021 26.1 10.2 91 36-137 3-114 (140)
116 PRK11175 universal stress prot 79.0 31 0.00066 28.0 10.1 44 94-137 227-273 (305)
117 KOG3425 Uncharacterized conser 77.6 11 0.00024 27.4 6.0 50 26-86 15-75 (128)
118 COG0626 MetC Cystathionine bet 75.2 42 0.00091 29.3 10.1 72 22-111 64-135 (396)
119 PF02670 DXP_reductoisom: 1-de 73.8 32 0.0007 25.1 8.7 87 21-135 13-100 (129)
120 PRK03958 tRNA 2'-O-methylase; 70.5 40 0.00087 26.0 8.0 79 44-139 12-93 (176)
121 PF01861 DUF43: Protein of unk 68.5 27 0.00059 28.4 7.0 74 19-112 27-100 (243)
122 PF10686 DUF2493: Protein of u 66.2 33 0.00072 22.2 5.9 64 36-114 2-68 (71)
123 PRK08114 cystathionine beta-ly 65.7 91 0.002 27.1 10.2 71 23-111 64-134 (395)
124 PF00154 RecA: recA bacterial 64.5 45 0.00097 28.3 7.8 69 42-131 62-137 (322)
125 PRK06702 O-acetylhomoserine am 64.1 65 0.0014 28.3 9.1 73 21-111 61-133 (432)
126 PRK07050 cystathionine beta-ly 62.5 1E+02 0.0022 26.5 10.0 70 23-110 67-136 (394)
127 PF10281 Ish1: Putative stress 62.3 7.5 0.00016 21.9 2.0 17 164-180 3-19 (38)
128 COG0468 RecA RecA/RadA recombi 61.9 26 0.00056 29.1 5.9 38 38-90 65-102 (279)
129 PRK15005 universal stress prot 59.5 60 0.0013 22.9 11.1 31 105-135 87-117 (144)
130 PRK08249 cystathionine gamma-s 58.4 1.2E+02 0.0026 26.1 10.2 25 22-46 65-89 (398)
131 KOG1706 Argininosuccinate synt 58.3 40 0.00087 28.7 6.3 36 36-86 6-41 (412)
132 cd01399 GlcN6P_deaminase GlcN6 56.5 93 0.002 24.2 9.0 107 21-137 6-128 (232)
133 PRK15456 universal stress prot 56.4 70 0.0015 22.7 10.7 89 36-136 3-116 (142)
134 COG4822 CbiK Cobalamin biosynt 55.3 70 0.0015 25.8 7.0 63 77-139 79-151 (265)
135 PF07796 DUF1638: Protein of u 54.6 26 0.00055 26.4 4.4 35 78-112 120-155 (166)
136 PRK07811 cystathionine gamma-s 54.6 1.4E+02 0.003 25.6 10.1 24 23-46 63-86 (388)
137 COG3575 Uncharacterized protei 54.4 1E+02 0.0022 24.0 8.9 61 75-139 57-135 (184)
138 PF09623 Cas_NE0113: CRISPR-as 54.4 56 0.0012 26.2 6.4 36 22-58 100-136 (224)
139 PF08821 CGGC: CGGC domain; I 53.8 49 0.0011 23.3 5.4 68 27-108 27-104 (107)
140 KOG3125 Thymidine kinase [Nucl 53.7 16 0.00035 29.0 3.2 39 76-114 104-144 (234)
141 PF01053 Cys_Met_Meta_PP: Cys/ 53.4 1.5E+02 0.0033 25.6 10.1 28 84-111 100-127 (386)
142 COG2179 Predicted hydrolase of 53.3 63 0.0014 24.9 6.2 51 84-135 44-120 (175)
143 PF09949 DUF2183: Uncharacteri 52.7 70 0.0015 22.2 6.0 45 24-83 53-98 (100)
144 PRK06434 cystathionine gamma-l 52.3 1.2E+02 0.0027 26.1 8.7 72 22-111 65-136 (384)
145 PRK09028 cystathionine beta-ly 51.7 1.6E+02 0.0035 25.5 10.3 56 38-111 78-133 (394)
146 TIGR01324 cysta_beta_ly_B cyst 51.0 1.6E+02 0.0034 25.2 9.7 26 86-111 97-122 (377)
147 TIGR02710 CRISPR-associated pr 50.9 78 0.0017 27.5 7.2 47 11-58 48-94 (380)
148 PRK05967 cystathionine beta-ly 50.3 1.7E+02 0.0037 25.4 10.4 27 86-112 111-137 (395)
149 PF00665 rve: Integrase core d 49.7 45 0.00096 22.7 4.8 62 38-111 39-100 (120)
150 CHL00073 chlN photochlorophyll 49.6 1.9E+02 0.0042 25.8 11.8 101 14-133 293-399 (457)
151 PRK08134 O-acetylhomoserine am 49.2 1.8E+02 0.004 25.4 10.2 72 22-111 65-136 (433)
152 KOG0053 Cystathionine beta-lya 47.0 1.6E+02 0.0035 25.9 8.5 29 84-112 122-150 (409)
153 cd00614 CGS_like CGS_like: Cys 46.9 1.8E+02 0.0038 24.6 10.4 24 87-110 88-111 (369)
154 PF04122 CW_binding_2: Putativ 42.9 98 0.0021 20.5 7.6 59 76-135 24-83 (92)
155 PRK08248 O-acetylhomoserine am 42.9 2.3E+02 0.005 24.8 10.3 28 23-50 66-93 (431)
156 COG1184 GCD2 Translation initi 42.2 2.1E+02 0.0045 24.1 11.6 79 15-110 98-177 (301)
157 PRK08133 O-succinylhomoserine 42.0 2.2E+02 0.0048 24.3 10.3 70 23-111 63-133 (390)
158 PRK12358 putative 6-phosphoglu 41.9 1.8E+02 0.0038 23.2 11.1 100 26-137 20-130 (239)
159 PF11202 PRTase_1: Phosphoribo 41.7 49 0.0011 27.1 4.3 50 76-137 144-201 (257)
160 TIGR03642 cas_csx13 CRISPR-ass 40.5 1.4E+02 0.0031 21.6 6.3 23 37-59 92-115 (124)
161 KOG2316 Predicted ATPase (PP-l 40.5 31 0.00067 27.9 2.9 22 37-58 2-23 (277)
162 PRK05968 hypothetical protein; 40.3 2.4E+02 0.0051 24.2 11.0 26 86-111 110-135 (389)
163 PF01182 Glucosamine_iso: Gluc 40.2 1.5E+02 0.0033 22.8 6.8 106 21-137 8-134 (199)
164 PF01008 IF-2B: Initiation fac 39.7 2E+02 0.0044 23.2 10.1 60 35-111 107-166 (282)
165 PRK07377 hypothetical protein; 38.7 1.9E+02 0.0041 22.5 7.7 58 76-133 76-137 (184)
166 cd02803 OYE_like_FMN_family Ol 37.5 2.3E+02 0.0051 23.3 13.0 105 15-133 187-312 (327)
167 KOG2303 Predicted NAD synthase 37.4 3.3E+02 0.0071 25.0 11.5 144 28-177 342-554 (706)
168 TIGR02855 spore_yabG sporulati 37.2 80 0.0017 26.3 4.9 57 75-134 103-163 (283)
169 PLN03159 cation/H(+) antiporte 36.8 2.4E+02 0.0051 27.2 8.7 23 37-59 632-654 (832)
170 PF03959 FSH1: Serine hydrolas 36.6 68 0.0015 24.9 4.4 39 17-57 84-122 (212)
171 PF05582 Peptidase_U57: YabG p 36.4 89 0.0019 26.1 5.1 58 75-135 104-165 (287)
172 PF14606 Lipase_GDSL_3: GDSL-l 36.3 1.8E+02 0.0039 22.5 6.5 62 33-111 32-101 (178)
173 TIGR02765 crypto_DASH cryptoch 36.0 2.9E+02 0.0063 23.9 10.7 78 13-110 53-132 (429)
174 PF09670 Cas_Cas02710: CRISPR- 36.0 1.7E+02 0.0037 25.2 7.1 43 15-58 51-93 (379)
175 KOG0066 eIF2-interacting prote 35.0 1.6E+02 0.0035 26.7 6.7 96 13-131 671-774 (807)
176 cd01400 6PGL 6PGL: 6-Phosphogl 34.5 2.3E+02 0.0049 22.2 11.4 104 21-137 10-131 (219)
177 PRK11175 universal stress prot 34.0 2.5E+02 0.0054 22.6 10.0 91 36-137 4-119 (305)
178 PRK08247 cystathionine gamma-s 33.8 2.9E+02 0.0063 23.3 10.0 27 23-49 54-80 (366)
179 PRK09354 recA recombinase A; P 33.7 2.2E+02 0.0047 24.5 7.2 68 42-130 69-143 (349)
180 PRK08574 cystathionine gamma-s 33.6 3.1E+02 0.0066 23.5 10.7 27 23-49 55-81 (385)
181 PRK00443 nagB glucosamine-6-ph 32.7 2.5E+02 0.0055 22.3 9.2 104 25-137 23-142 (261)
182 PF08423 Rad51: Rad51; InterP 32.7 1.9E+02 0.0042 23.3 6.6 43 38-89 43-85 (256)
183 PRK07503 methionine gamma-lyas 32.6 3.2E+02 0.007 23.5 10.2 27 22-48 66-92 (403)
184 KOG0269 WD40 repeat-containing 32.5 22 0.00047 33.5 1.1 22 38-59 322-343 (839)
185 PRK08776 cystathionine gamma-s 31.5 3.4E+02 0.0074 23.4 10.6 25 86-110 107-131 (405)
186 PF03853 YjeF_N: YjeF-related 31.4 2.2E+02 0.0049 21.3 9.3 51 45-110 38-88 (169)
187 PRK06176 cystathionine gamma-s 31.3 3.3E+02 0.0072 23.2 8.6 69 23-110 52-120 (380)
188 COG1646 Predicted phosphate-bi 30.9 2.4E+02 0.0051 23.0 6.6 61 75-139 163-227 (240)
189 PLN02509 cystathionine beta-ly 30.2 3.9E+02 0.0086 23.7 10.4 23 24-46 136-158 (464)
190 PRK06767 methionine gamma-lyas 30.2 3.5E+02 0.0075 23.1 10.3 23 87-109 109-131 (386)
191 PRK05939 hypothetical protein; 29.9 3.6E+02 0.0079 23.2 10.2 71 22-111 48-118 (397)
192 PF02350 Epimerase_2: UDP-N-ac 29.8 3.4E+02 0.0074 22.9 9.5 55 13-85 46-100 (346)
193 COG1568 Predicted methyltransf 29.7 39 0.00085 28.4 2.0 29 76-109 177-206 (354)
194 TIGR01198 pgl 6-phosphoglucono 29.7 2.8E+02 0.0062 21.9 7.1 102 22-137 16-138 (233)
195 PF09547 Spore_IV_A: Stage IV 29.6 1.8E+02 0.0039 26.0 6.1 36 76-111 181-217 (492)
196 PLN02720 complex II 29.6 37 0.0008 24.9 1.6 19 158-176 33-51 (140)
197 COG1751 Uncharacterized conser 29.5 1.1E+02 0.0025 23.3 4.2 62 33-110 26-90 (186)
198 cd06353 PBP1_BmpA_Med_like Per 29.4 3E+02 0.0064 22.0 9.2 81 37-127 1-82 (258)
199 PRK03080 phosphoserine aminotr 29.4 3.5E+02 0.0076 22.9 8.4 80 12-111 43-123 (378)
200 PRK07810 O-succinylhomoserine 29.4 3.7E+02 0.0081 23.2 10.1 29 23-51 72-100 (403)
201 PF04723 GRDA: Glycine reducta 29.3 2.4E+02 0.0053 21.0 6.5 29 21-50 52-80 (150)
202 PRK07049 methionine gamma-lyas 29.3 3.8E+02 0.0083 23.3 10.5 25 24-48 86-110 (427)
203 KOG1946 RNA polymerase I trans 29.1 27 0.00059 28.3 1.0 12 168-179 126-137 (240)
204 PHA02517 putative transposase 28.9 1.1E+02 0.0024 24.6 4.6 63 37-111 138-202 (277)
205 PRK06460 hypothetical protein; 28.7 3.7E+02 0.0079 22.9 9.7 24 24-47 48-71 (376)
206 COG2515 Acd 1-aminocyclopropan 28.7 2.2E+02 0.0048 24.1 6.2 72 19-105 165-240 (323)
207 COG1122 CbiO ABC-type cobalt t 28.4 2.9E+02 0.0063 22.1 6.9 75 22-114 115-200 (235)
208 PF06437 ISN1: IMP-specific 5' 28.3 86 0.0019 27.4 3.9 31 17-47 310-342 (408)
209 PF02201 SWIB: SWIB/MDM2 domai 28.3 34 0.00074 22.3 1.2 12 168-179 27-38 (76)
210 cd06130 DNA_pol_III_epsilon_li 28.2 78 0.0017 22.8 3.3 23 36-58 77-99 (156)
211 PF02677 DUF208: Uncharacteriz 27.8 2.9E+02 0.0062 21.4 7.2 53 44-111 7-63 (176)
212 COG1066 Sms Predicted ATP-depe 27.5 4.5E+02 0.0097 23.5 8.4 65 47-130 106-173 (456)
213 KOG3325 Membrane coat complex 27.0 2.3E+02 0.005 21.6 5.5 55 76-135 30-117 (183)
214 PRK03692 putative UDP-N-acetyl 26.7 3.4E+02 0.0074 21.9 9.3 58 76-135 105-167 (243)
215 COG0075 Serine-pyruvate aminot 26.6 4.3E+02 0.0094 23.0 12.3 92 11-123 32-128 (383)
216 PLN02242 methionine gamma-lyas 26.4 4.3E+02 0.0093 22.9 10.5 29 21-49 76-104 (418)
217 COG0796 MurI Glutamate racemas 26.1 2.9E+02 0.0063 22.8 6.5 42 15-59 49-90 (269)
218 PF10087 DUF2325: Uncharacteri 25.9 2.1E+02 0.0045 19.2 9.0 35 77-111 49-83 (97)
219 cd01025 TOPRIM_recR TOPRIM_rec 25.9 1.7E+02 0.0037 20.8 4.5 30 30-59 52-81 (112)
220 cd00983 recA RecA is a bacter 25.7 3.8E+02 0.0082 22.7 7.3 68 42-130 64-138 (325)
221 PLN02530 histidine-tRNA ligase 25.6 4.8E+02 0.01 23.2 8.5 95 28-133 363-460 (487)
222 PRK06027 purU formyltetrahydro 25.6 3.8E+02 0.0083 22.1 8.3 76 36-131 90-171 (286)
223 cd04860 AE_Prim_S AE_Prim_S: p 25.4 1.3E+02 0.0027 24.3 4.2 27 19-45 109-136 (232)
224 PRK06234 methionine gamma-lyas 25.4 4.3E+02 0.0094 22.6 10.5 26 24-49 67-92 (400)
225 PF01896 DNA_primase_S: Eukary 25.4 1.6E+02 0.0034 21.0 4.5 31 15-45 23-53 (145)
226 cd08537 SAM_PNT-ESE-1-like Ste 25.1 44 0.00096 22.3 1.3 15 163-177 11-25 (78)
227 TIGR02080 O_succ_thio_ly O-suc 25.0 4.4E+02 0.0095 22.5 10.4 26 24-49 54-79 (382)
228 TIGR01325 O_suc_HS_sulf O-succ 24.8 4.3E+02 0.0094 22.4 9.7 26 86-111 101-126 (380)
229 TIGR00524 eIF-2B_rel eIF-2B al 24.4 4.2E+02 0.0091 22.1 12.9 34 76-111 152-186 (303)
230 TIGR02012 tigrfam_recA protein 23.8 4.5E+02 0.0097 22.2 7.6 68 42-130 64-138 (321)
231 TIGR02826 RNR_activ_nrdG3 anae 23.6 2.9E+02 0.0062 20.4 5.6 8 39-46 64-71 (147)
232 TIGR01328 met_gam_lyase methio 23.5 4.7E+02 0.01 22.4 10.4 26 23-48 61-86 (391)
233 PRK13343 F0F1 ATP synthase sub 23.5 4.3E+02 0.0094 23.9 7.6 57 75-131 189-259 (502)
234 cd06533 Glyco_transf_WecG_TagA 23.3 3.3E+02 0.0071 20.4 8.8 59 76-136 46-110 (171)
235 TIGR02491 NrdG anaerobic ribon 23.2 2.7E+02 0.0058 20.5 5.4 40 39-92 66-111 (154)
236 PRK08335 translation initiatio 23.0 4.4E+02 0.0095 21.8 16.9 61 34-111 108-168 (275)
237 PF07905 PucR: Purine cataboli 22.8 2.4E+02 0.0052 19.8 4.9 63 36-112 43-108 (123)
238 PF00185 OTCace: Aspartate/orn 22.5 3.3E+02 0.0071 20.2 7.1 75 37-133 2-81 (158)
239 PF06057 VirJ: Bacterial virul 22.4 1.7E+02 0.0036 23.0 4.2 26 25-50 57-83 (192)
240 PHA00439 exonuclease 22.1 4.7E+02 0.01 21.8 8.5 22 24-45 50-74 (286)
241 PRK08064 cystathionine beta-ly 21.9 5.1E+02 0.011 22.1 9.0 26 86-111 100-125 (390)
242 PRK07740 hypothetical protein; 21.9 1E+02 0.0022 24.7 3.1 58 36-107 141-203 (244)
243 PF07355 GRDB: Glycine/sarcosi 21.8 5.2E+02 0.011 22.3 7.5 74 10-97 56-131 (349)
244 cd04733 OYE_like_2_FMN Old yel 21.8 4.8E+02 0.01 21.8 12.5 106 14-133 194-323 (338)
245 COG0124 HisS Histidyl-tRNA syn 21.7 5.7E+02 0.012 22.6 8.2 97 31-139 300-400 (429)
246 smart00151 SWIB SWI complex, B 21.6 48 0.001 21.6 0.9 10 170-179 29-38 (77)
247 TIGR01329 cysta_beta_ly_E cyst 21.6 5.1E+02 0.011 22.0 10.5 26 86-111 93-118 (378)
248 COG4087 Soluble P-type ATPase 21.5 2.8E+02 0.0061 20.7 5.0 17 121-137 89-105 (152)
249 cd01132 F1_ATPase_alpha F1 ATP 21.5 4.7E+02 0.01 21.6 8.9 56 76-131 97-166 (274)
250 PRK08861 cystathionine gamma-s 21.3 5.3E+02 0.012 22.2 10.3 28 23-50 55-82 (388)
251 COG0148 Eno Enolase [Carbohydr 21.2 4.4E+02 0.0096 23.2 6.8 48 87-136 261-312 (423)
252 PF11966 SSURE: Fibronectin-bi 21.1 93 0.002 20.6 2.2 20 39-58 24-46 (81)
253 cd06259 YdcF-like YdcF-like. Y 21.1 3.2E+02 0.0069 19.5 7.2 75 23-112 20-104 (150)
254 PRK08535 translation initiatio 20.9 5E+02 0.011 21.7 13.6 61 34-111 119-179 (310)
255 PF00809 Pterin_bind: Pterin b 20.9 4.1E+02 0.0088 20.6 6.9 32 25-58 84-115 (210)
256 cd00458 SugarP_isomerase Sugar 20.7 3.7E+02 0.0079 20.0 7.2 35 22-58 8-42 (169)
257 KOG1618 Predicted phosphatase 20.5 1.2E+02 0.0027 26.0 3.3 57 75-132 70-127 (389)
258 PLN02360 probable 6-phosphoglu 20.5 4E+02 0.0086 21.6 6.3 33 12-46 19-52 (268)
259 PRK09731 putative general secr 20.3 1.8E+02 0.0039 22.5 4.0 30 80-110 129-158 (178)
260 PF00875 DNA_photolyase: DNA p 20.3 3.5E+02 0.0077 19.7 9.7 76 16-111 48-125 (165)
261 COG4607 CeuA ABC-type enteroch 20.2 1.6E+02 0.0034 25.0 3.9 88 12-134 172-259 (320)
262 PF07282 OrfB_Zn_ribbon: Putat 20.1 1.7E+02 0.0037 18.2 3.3 25 88-112 1-25 (69)
263 TIGR00696 wecB_tagA_cpsF bacte 20.0 4E+02 0.0087 20.3 8.8 57 77-135 49-110 (177)
No 1
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=2.5e-35 Score=243.56 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
..|+.++++|+++|+++++.+ ++++++|||||||+|+|||+++++. + ...+++++|+|||.+||||+
T Consensus 17 ~~L~~le~esi~ilrea~~~f--~~~~v~~SgGKDS~VlLhLa~kaf~--~---------~~~~~pvl~VDTG~~FpEt~ 83 (312)
T PRK12563 17 GHLDRLEAESIHILREVVAEC--SKPVMLYSIGKDSVVMLHLAMKAFR--P---------TRPPFPLLHVDTTWKFREMI 83 (312)
T ss_pred hHHHHHHHHHHHHHHHHHHhc--CCcEEEecCChHHHHHHHHHHHhhc--c---------cCCCeeEEEeCCCCCCHHHH
Confidence 569999999999999999998 4679999999999999999999863 1 11478999999999999999
Q ss_pred HHHHHHhhhcCceEEEEccc--------------------HH-HHHHHHHHhCCCcEEEEeeeCCCcc-ccCCcccCCCC
Q 030189 93 SFTYDTASKYVLQLDIIRSD--------------------FK-SGLEALLNAKPIRAIFLGVRIGDPT-AVGQEQFSPSS 150 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~--------------------~k-~~l~~~~~~~~~~~~i~G~R~~es~-~~~~~~~~~~~ 150 (181)
+|+++++++||++++++.+. +| +||++++++.+.++||+|+|++|+. |..+..++..+
T Consensus 84 efrD~~a~~~gl~Liv~~~~~~~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~r~ 163 (312)
T PRK12563 84 DFRDRRAKELGLDLVVHHNPDGIARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRS 163 (312)
T ss_pred HHHHHHHHHhCCcEEEecChHHHHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecccc
Confidence 99999999999999886542 22 5899999888999999999999965 54555555322
Q ss_pred --CCC------C-------------CeeEEecccCCchHHHHHHHhccccC
Q 030189 151 --PGW------P-------------PFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 151 --~~~------~-------------~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.+| | +.+|++||++||+.|||.||..|+|-
T Consensus 164 ~~~~wD~~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP 214 (312)
T PRK12563 164 AFHRWDPKAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIP 214 (312)
T ss_pred cccccCccccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCC
Confidence 112 1 37899999999999999999999874
No 2
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=1.1e-33 Score=226.28 Aligned_cols=143 Identities=18% Similarity=0.232 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhh
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTAS 100 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~ 100 (181)
.+.++|+++++.|+ ++++++|||||||+|+|||++++.. .++++||+|||.+||||++|++++.+
T Consensus 12 ~~~~~l~~~~~~~~-~~~~~s~S~Gkds~VlL~l~~~~~~--------------~~i~vv~vDTg~~fpET~e~~d~~~~ 76 (226)
T TIGR02057 12 TPQEIIAWSIVTFP-HGLVQTSAFGIQALVTLHLLSSISE--------------PMIPVIFIDTLYHFPQTLTLKDELTK 76 (226)
T ss_pred CHHHHHHHHHHHcC-CCEEEEecCCHHHHHHHHHHHHhhC--------------CCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 67788999999985 6899999999999999999999851 36999999999999999999999999
Q ss_pred hcC--ceEEEEcccH-------------------------H-HHHHHHHHhCCCcEEEEeeeCCCcc-ccCCcccCCCCC
Q 030189 101 KYV--LQLDIIRSDF-------------------------K-SGLEALLNAKPIRAIFLGVRIGDPT-AVGQEQFSPSSP 151 (181)
Q Consensus 101 ~~~--l~~~~~~~~~-------------------------k-~~l~~~~~~~~~~~~i~G~R~~es~-~~~~~~~~~~~~ 151 (181)
.|+ +++.++.+.. | +||++++++.+.++||+|+|++||. |+++..++.+.
T Consensus 77 ~~~~~l~v~~~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~Ra~~~~~~~d~- 155 (226)
T TIGR02057 77 KYYQTLNLYKYDGCESEADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSARANLPVIEIDE- 155 (226)
T ss_pred HhCCceEEEEeCCchhHHHHHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCccccCCccccccC-
Confidence 999 6666655420 0 3788999888788999999999975 44666776532
Q ss_pred CCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 152 GWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 152 ~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.++.++++||++||+.|||.||.+|++-
T Consensus 156 -~~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP 183 (226)
T TIGR02057 156 -QNGILKVNPLIDWTFEQVYQYLDAHNVP 183 (226)
T ss_pred -CCCeEEEeehhhCCHHHHHHHHHHcCCC
Confidence 2579999999999999999999999873
No 3
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=1.7e-33 Score=223.06 Aligned_cols=140 Identities=17% Similarity=0.300 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhc
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKY 102 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~ 102 (181)
.++|+++++.|+ .+++++|||||||+|+|||++++. .++++||+|||.+||||++|++++.+.|
T Consensus 2 ~~~l~~a~~~~~-~~~~~s~SgGKDS~Vll~L~~~~~---------------~~~~v~f~DTg~efpeT~efv~~~~~~~ 65 (212)
T TIGR00434 2 QEIIAWAYVTFG-GHLVYSTSFGIQGAVLLDLVSKIS---------------PDIPVIFLDTGYHFPETYELIDELTERY 65 (212)
T ss_pred HHHHHHHHHhcC-CCEEEEecCCHHHHHHHHHHHhcC---------------CCCcEEEecCCCCCHHHHHHHHHHHHHh
Confidence 578999999997 589999999999999999999874 3689999999999999999999999999
Q ss_pred CceEEEEcccHH--------------------------HHHHHHHHhCCCcEEEEeeeCCCcccc-CCcccCCCCCCCCC
Q 030189 103 VLQLDIIRSDFK--------------------------SGLEALLNAKPIRAIFLGVRIGDPTAV-GQEQFSPSSPGWPP 155 (181)
Q Consensus 103 ~l~~~~~~~~~k--------------------------~~l~~~~~~~~~~~~i~G~R~~es~~~-~~~~~~~~~~~~~~ 155 (181)
+++++++.|+.. +|+.+++++.+..+|++|+|++||..| .+...+. +.. ++
T Consensus 66 ~l~i~~~~~~~~~~~~~~~~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R~~~~~~~~-~~~-~~ 143 (212)
T TIGR00434 66 PLNIKVYKPDLSLAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSRANLSILNI-DEK-FG 143 (212)
T ss_pred CCceEEECCchhHHHHHHhcCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCccccCCceeee-cCC-CC
Confidence 999998886410 368888888777899999999997544 4444333 222 47
Q ss_pred eeEEecccCCchHHHHHHHhccccC
Q 030189 156 FMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 156 ~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.++++||++|++.|||.||..|++-
T Consensus 144 ~~~v~PI~dWt~~dVw~Yi~~~~lp 168 (212)
T TIGR00434 144 ILKVLPLIDWTWKDVYQYIDAHNLP 168 (212)
T ss_pred cEEEeehhhCCHHHHHHHHHHcCCC
Confidence 8999999999999999999999874
No 4
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=2.3e-33 Score=230.87 Aligned_cols=153 Identities=25% Similarity=0.380 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF 94 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f 94 (181)
|+.++++|+++|+++++.|+ +++++|||||||+|+|||+.+++.. ...+++++|+|||.+|||+++|
T Consensus 1 l~~le~esi~ilRe~~~~f~--~~vv~~SGGKDS~VlLhLa~kaf~~-----------~~~p~~vl~IDTG~~F~Et~ef 67 (294)
T TIGR02039 1 LRALESEAIHIIREVAAEFE--RPVMLYSIGKDSSVLLHLARKAFYP-----------GPLPFPLLHVDTGWKFREMIAF 67 (294)
T ss_pred ChHHHHHHHHHHHHHHHhcC--CcEEEEecChHHHHHHHHHHHHhcc-----------cCCCeEEEEEecCCCCHHHHHH
Confidence 56789999999999999984 5688999999999999999998631 0147899999999999999999
Q ss_pred HHHHhhhcCceEEEEccc--------------------HH-HHHHHHHHhCCCcEEEEeeeCCCcccc-CCcccCCCC--
Q 030189 95 TYDTASKYVLQLDIIRSD--------------------FK-SGLEALLNAKPIRAIFLGVRIGDPTAV-GQEQFSPSS-- 150 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~--------------------~k-~~l~~~~~~~~~~~~i~G~R~~es~~~-~~~~~~~~~-- 150 (181)
+++++++||++++++.+. +| ++|++++++.+.++|++|+|+||+..| ....++..+
T Consensus 68 rd~~a~~~gl~l~v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~sRake~i~s~r~~~ 147 (294)
T TIGR02039 68 RDHMVAKYGLRLIVHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRNAF 147 (294)
T ss_pred HHHHHHHhCCCEEEEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhhHhhcCceeeccccc
Confidence 999999999999997652 11 479999999999999999999996544 343433211
Q ss_pred CCC-------------------CCeeEEecccCCchHHHHHHHhccccC
Q 030189 151 PGW-------------------PPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 151 ~~~-------------------~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
..| ...++++||++||+.|||.||..|+|-
T Consensus 148 ~~wD~~~q~Pelw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP 196 (294)
T TIGR02039 148 HQWDPKKQRPELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIP 196 (294)
T ss_pred cccCccccCchhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCC
Confidence 011 136899999999999999999999874
No 5
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=8.3e-33 Score=228.98 Aligned_cols=155 Identities=24% Similarity=0.368 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
..|+.++++|++.|+++++.| ++++++|||||||+|||||+++++.. ...+++++|+|||.+|||++
T Consensus 7 ~~L~~le~esi~iLrea~~~f--~~~vv~~SGGKDS~VLL~La~ka~~~-----------~~~~~~vl~iDTG~~FpEt~ 73 (301)
T PRK05253 7 THLDQLEAESIHILREVAAEF--ENPVMLYSIGKDSSVMLHLARKAFYP-----------GKLPFPLLHVDTGWKFPEMI 73 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCEEEEecCCHHHHHHHHHHHHhhcc-----------cCCCeeEEEEeCCCCCHHHH
Confidence 569999999999999999998 58999999999999999999998531 01468999999999999999
Q ss_pred HHHHHHhhhcCceEEEEccc--------------------HH-HHHHHHHHhCCCcEEEEeeeCCCccccC-CcccCCCC
Q 030189 93 SFTYDTASKYVLQLDIIRSD--------------------FK-SGLEALLNAKPIRAIFLGVRIGDPTAVG-QEQFSPSS 150 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~--------------------~k-~~l~~~~~~~~~~~~i~G~R~~es~~~~-~~~~~~~~ 150 (181)
+|+++++++||++++++.++ +| .+|.+++++++.++|++|+|+||+..|+ ...+++.+
T Consensus 74 ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~r~ 153 (301)
T PRK05253 74 EFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRD 153 (301)
T ss_pred HHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCccccccc
Confidence 99999999999999887542 12 4799999999999999999999965443 33444322
Q ss_pred C--CC-------------------CCeeEEecccCCchHHHHHHHhccccC
Q 030189 151 P--GW-------------------PPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 151 ~--~~-------------------~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
. +| .+.++++||++||+.|||.||..++|-
T Consensus 154 ~~~~wd~~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP 204 (301)
T PRK05253 154 EFGQWDPKNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIP 204 (301)
T ss_pred cccccCccccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCC
Confidence 1 11 136899999999999999999999874
No 6
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.2e-32 Score=222.90 Aligned_cols=152 Identities=28% Similarity=0.403 Sum_probs=127.1
Q ss_pred chHHHHHHHHH-HHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH
Q 030189 12 DRRLKTKYNNA-INVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE 90 (181)
Q Consensus 12 ~~~l~~~~~~a-~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe 90 (181)
...++.+++.+ .++++++++.++ .+++++|||||||+|+|||+.++. .++++||+|||.+|||
T Consensus 16 ~~~~~~le~~~~~~i~~~~~~~~~-~~~~~~~S~Gkds~V~l~L~~k~~---------------~~~~vif~DTg~~f~E 79 (261)
T COG0175 16 ASLLDKLEAESPIEILRWAAEEFS-NPVVVSFSGGKDSTVLLHLAAKAF---------------PDFPVIFLDTGYHFPE 79 (261)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHcC-CCeEEEecCchhHHHHHHHHHHhc---------------CCCcEEEEeCCCcCHH
Confidence 34566666666 788888999997 568999999999999999999985 3599999999999999
Q ss_pred HHHHHHHHhhhcCceEEEEcccH-------------------------H-HHHHHHHHhCCCcEEEEeeeCCCccccCCc
Q 030189 91 INSFTYDTASKYVLQLDIIRSDF-------------------------K-SGLEALLNAKPIRAIFLGVRIGDPTAVGQE 144 (181)
Q Consensus 91 ~~~f~~~~~~~~~l~~~~~~~~~-------------------------k-~~l~~~~~~~~~~~~i~G~R~~es~~~~~~ 144 (181)
|++|++++.++||+++.+..++- | +||+++++..+.++|++|.|++||..|+..
T Consensus 80 t~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~Rak~ 159 (261)
T COG0175 80 TYEFRDRLAEEYGLDLKVYRPDDEVAEGEKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTRAKL 159 (261)
T ss_pred HHHHHHHHHHHcCCeEEEecCccchhhhhhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccccccccC
Confidence 99999999999999998887630 0 389999998777899999999997655544
Q ss_pred ccCCCCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 145 QFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 145 ~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
.+...+..+++.++++||++||..|||.||..|++
T Consensus 160 ~~~~~~~~~~~~~rv~Pl~~Wt~~dVw~Yi~~~~l 194 (261)
T COG0175 160 PVVSFDSEFGESIRVNPLADWTELDVWLYILANNL 194 (261)
T ss_pred ceeccccCcCCeEEEcchhcCCHHHHHHHHHHhCC
Confidence 43333444557999999999999999999999986
No 7
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=230.19 Aligned_cols=162 Identities=23% Similarity=0.309 Sum_probs=134.6
Q ss_pred hhHHHhhcCchHHHHHHHHHHHHHHHHHHhcCC--CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEE
Q 030189 3 IDKAIRESDDRRLKTKYNNAINVIQRTLALYSI--EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTI 80 (181)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~a~~~i~~~~~~~~~--~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (181)
+.+++++ |+..|+.++++|+++|+++++.|+. ..+++||||||||+|++||+.++. .++++|
T Consensus 148 ~~~~i~~-n~~~l~~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~---------------~~i~vv 211 (417)
T PRK08557 148 IEDYLEK-NKERIEKLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVI---------------PDLEVI 211 (417)
T ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhC---------------CCCEEE
Confidence 4667765 7889999999999999999999964 368899999999999999998873 368999
Q ss_pred EecCCCCchHHHHHHHHHhhhcCceEEEEccc-HH----------------------HHHHHHHHh---CCCcEEEEeee
Q 030189 81 YFESNSAFPEINSFTYDTASKYVLQLDIIRSD-FK----------------------SGLEALLNA---KPIRAIFLGVR 134 (181)
Q Consensus 81 ~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~-~k----------------------~~l~~~~~~---~~~~~~i~G~R 134 (181)
|+|||.+||||++|+++++++||+++.++.++ +. +|+++++++ .+..++++|+|
T Consensus 212 fvDTG~efpET~e~ve~v~~~ygl~i~v~~~~~f~~~~~~~G~Ps~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~R 291 (417)
T PRK08557 212 FIDTGLEYPETINYVKDFAKKYDLNLDTLDGDNFWENLEKEGIPTKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSR 291 (417)
T ss_pred EEECCCCCHHHHHHHHHHHHHhCCCEEEEechHHHHHHhhccCCcccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeee
Confidence 99999999999999999999999999888763 11 378888887 34578999999
Q ss_pred CCCccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 135 IGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 135 ~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
++||..|+.......++..++.++++||++||+.|||.||..|++-
T Consensus 292 r~ES~~Ra~~~~~~~~~~~~~~~~i~PI~~Wt~~dVW~YI~~~~lp 337 (417)
T PRK08557 292 KYESFTRANLDYERKSGFIDFQTNVFPILDWNSLDIWSYIYLNDIL 337 (417)
T ss_pred cccchhhccCceecccccccCceeEEecccCCHHHHHHHHHHcCCC
Confidence 9998765544443333323457899999999999999999999864
No 8
>PRK13794 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=234.57 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=137.4
Q ss_pred hhHHHhhcCchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEe
Q 030189 3 IDKAIRESDDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYF 82 (181)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~i 82 (181)
+++++++ |+..|+.++++|+++|+++++.++ ++++|||||||||+|+|||+.++.. .++.+||+
T Consensus 217 ~~~~~~~-n~~~l~~~~~~a~~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~~~~~~--------------~~~~vvfi 280 (479)
T PRK13794 217 WKDMVEA-NKNVLDKYERNSIGFIRNTAEKIN-KPVTVAYSGGKDSLATLLLALKALG--------------INFPVLFN 280 (479)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecchHHHHHHHHHHHHHhC--------------CCeEEEEE
Confidence 4677777 899999999999999999999986 7899999999999999999998841 36899999
Q ss_pred cCCCCchHHHHHHHHHhhhcCceEEEEccc-HH----------------------HHHHHHHHhC--CCcEEEEeeeCCC
Q 030189 83 ESNSAFPEINSFTYDTASKYVLQLDIIRSD-FK----------------------SGLEALLNAK--PIRAIFLGVRIGD 137 (181)
Q Consensus 83 dtg~~fpe~~~f~~~~~~~~~l~~~~~~~~-~k----------------------~~l~~~~~~~--~~~~~i~G~R~~e 137 (181)
|||.+||||++|+++++++||++++++.++ +. +||.+++++. +..++++|+|++|
T Consensus 281 DTG~efpet~e~i~~~~~~~gl~i~~~~~~~f~~~~~~~G~P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~E 360 (479)
T PRK13794 281 DTGLEFPETLENVEDVEKHYGLEIIRTKSEEFWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYE 360 (479)
T ss_pred ECCCCChHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCc
Confidence 999999999999999999999999988753 11 3788888763 4678999999999
Q ss_pred ccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 138 PTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 138 s~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
|..|+.......+..+++.++++||++||..|||.||..|.+-
T Consensus 361 S~~Ra~~~~~~~~~~~~~~~~~~PI~~Wt~~dVw~Yi~~~~lp 403 (479)
T PRK13794 361 SFNRSKKPRIWRNPYIKKQILAAPILHWTAMHVWIYLFREKAP 403 (479)
T ss_pred cHhHhcCcccccccCcCCcEEEechHhCCHHHHHHHHHHcCCC
Confidence 8755544433344556788999999999999999999998763
No 9
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.97 E-value=2.2e-31 Score=214.86 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhh
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTAS 100 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~ 100 (181)
+++++|+++++.|+ ++++|+|||||||+|+|||+.++. .++++||+|||.+||||++|++++++
T Consensus 27 ~~~e~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~~~~~---------------~~i~vvfiDTG~~~pet~e~~~~~~~ 90 (241)
T PRK02090 27 SAQERLAWALENFG-GRLALVSSFGAEDAVLLHLVAQVD---------------PDIPVIFLDTGYLFPETYRFIDELTE 90 (241)
T ss_pred CHHHHHHHHHHHcC-CCEEEEecCCHHHHHHHHHHHhcC---------------CCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 79999999999997 679999999999999999999863 36999999999999999999999999
Q ss_pred hcCceEEEEcccH-----------------H-----------HHHHHHHHhCCCcEEEEeeeCCCccccC-CcccCCCCC
Q 030189 101 KYVLQLDIIRSDF-----------------K-----------SGLEALLNAKPIRAIFLGVRIGDPTAVG-QEQFSPSSP 151 (181)
Q Consensus 101 ~~~l~~~~~~~~~-----------------k-----------~~l~~~~~~~~~~~~i~G~R~~es~~~~-~~~~~~~~~ 151 (181)
.||+++++++++. + .||++++++.+. |++|+|++|+..|. +..++..
T Consensus 91 ~~gl~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~R~~~~~~~~~-- 166 (241)
T PRK02090 91 RLLLNLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGTRANLPVLEID-- 166 (241)
T ss_pred HhCCCEEEECCCccHHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCchhccCceeeec--
Confidence 9999999987641 0 367888876543 99999999976444 4444432
Q ss_pred CCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 152 GWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 152 ~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
++..+++||++|++.|||.||..|++-
T Consensus 167 --~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp 193 (241)
T PRK02090 167 --GGRFKINPLADWTNEDVWAYLKEHDLP 193 (241)
T ss_pred --CCeEEEeehhhCCHHHHHHHHHHcCCC
Confidence 267899999999999999999999873
No 10
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.97 E-value=1.3e-30 Score=198.97 Aligned_cols=128 Identities=26% Similarity=0.396 Sum_probs=95.4
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccH---
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDF--- 113 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~--- 113 (181)
+++|+|||||||+|+|||++++.. ++++||+|||.+|||+++|++++.++||+++.+..+..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~---------------~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~ 65 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR---------------KVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFE 65 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT---------------TCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC---------------CCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchh
Confidence 479999999999999999999862 46899999999999999999999999999988876531
Q ss_pred ---------------------H-HHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHH
Q 030189 114 ---------------------K-SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLI 171 (181)
Q Consensus 114 ---------------------k-~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw 171 (181)
| +|+++++++.+..++++|+|++||.+|........+..+++..+++||++||.+|||
T Consensus 66 ~~~~~~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~R~~~~~~~~~~~~~~~~~~~Pi~~wt~~dV~ 145 (174)
T PF01507_consen 66 QRFILYGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPRRAKLPMFEFDEDNPKIIRVYPIADWTEEDVW 145 (174)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTGCCGSSSEEEETTTTSEEEE-TTTT--HHHHH
T ss_pred hccccccccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhhhhhchhhhcccccCCEEEEEehhhCCHHHHH
Confidence 0 367888888888899999999998766543222223344568899999999999999
Q ss_pred HHHhcccc
Q 030189 172 NNKLFGFI 179 (181)
Q Consensus 172 ~yi~~~~~ 179 (181)
+||..+++
T Consensus 146 ~yi~~~~l 153 (174)
T PF01507_consen 146 DYIKANGL 153 (174)
T ss_dssp HHHHHHT-
T ss_pred HHHHHhcC
Confidence 99999876
No 11
>PRK13795 hypothetical protein; Provisional
Probab=99.97 E-value=5.8e-30 Score=230.67 Aligned_cols=161 Identities=22% Similarity=0.321 Sum_probs=136.2
Q ss_pred hhHHHhhcCchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEe
Q 030189 3 IDKAIRESDDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYF 82 (181)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~i 82 (181)
+++++++ |...|+.++++|++.|+++++.|+ ++++|||||||||+|+|||+.++. .++.++|+
T Consensus 213 ~~~~~~~-n~~~l~~~~~~ai~~Ir~~~~~~~-~~v~Va~SGGKDS~vll~L~~~a~---------------~~~~vvfi 275 (636)
T PRK13795 213 LEDAIEA-NRKHLEEKEKEAVNFIRGVAEKYN-LPVSVSFSGGKDSLVVLDLAREAL---------------KDFKAFFN 275 (636)
T ss_pred HHHHHHh-HHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecCcHHHHHHHHHHHHhC---------------CCcEEEEE
Confidence 4677777 789999999999999999999984 789999999999999999999874 25899999
Q ss_pred cCCCCchHHHHHHHHHhhhcCceEEEEccc--HH----------------------HHHHHHHHhC--CCcEEEEeeeCC
Q 030189 83 ESNSAFPEINSFTYDTASKYVLQLDIIRSD--FK----------------------SGLEALLNAK--PIRAIFLGVRIG 136 (181)
Q Consensus 83 dtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--~k----------------------~~l~~~~~~~--~~~~~i~G~R~~ 136 (181)
|||.+|||+++|++++++.||++++++.+. |. .|+.+++++. ...++++|+|++
T Consensus 276 DTg~efpet~e~v~~~~~~~gi~i~~~~~~~~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ 355 (636)
T PRK13795 276 NTGLEFPETVENVKEVAEEYGIELIEADAGDAFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKY 355 (636)
T ss_pred eCCCCCHHHHHHHHHHHHHcCCcEEEEcccHhHHHhhhccCCCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEcc
Confidence 999999999999999999999999888763 21 3688888775 246899999999
Q ss_pred CccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 137 DPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 137 es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
||..|........++.+++.++++||++||+.|||.||..|++-
T Consensus 356 ES~~R~~~~~~~~~~~~~~~~~~~PI~~Wt~~dVw~YI~~~~lp 399 (636)
T PRK13795 356 ESFSRAKSPRVWRNPWVPNQIGASPIQDWTALEVWLYIFWRKLP 399 (636)
T ss_pred chHHHhhCcccccCCCCCCcEEEechHhCCHHHHHHHHHHhCCC
Confidence 98655544333334445788999999999999999999998864
No 12
>PLN02309 5'-adenylylsulfate reductase
Probab=99.96 E-value=6.1e-29 Score=215.40 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=119.5
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 15 LKTKYN--NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 15 l~~~~~--~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
|....+ .+.++|+++++.|+ +++++++|||+|+ |++||+.++. .++++||+|||.+||||+
T Consensus 89 ln~~l~~~~~~eil~~a~~~~~-~~ia~~~SG~ed~-vll~l~~~~~---------------~~ipV~flDTG~lfpETy 151 (457)
T PLN02309 89 LAKELENASPLEIMDKALEKFG-NDIAIAFSGAEDV-ALIEYAHLTG---------------RPFRVFSLDTGRLNPETY 151 (457)
T ss_pred HHHHhhcCCHHHHHHHHHHHcC-CCEEEEecchHHH-HHHHHHHHhC---------------CCCcEEEecCCCCCHHHH
Confidence 444443 57899999999997 6899999977766 7889988763 468999999999999999
Q ss_pred HHHHHHhhhcCceEEEEcccHH----------------------------HHHHHHHHhCCCcEEEEeeeCCCc--cccC
Q 030189 93 SFTYDTASKYVLQLDIIRSDFK----------------------------SGLEALLNAKPIRAIFLGVRIGDP--TAVG 142 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~~k----------------------------~~l~~~~~~~~~~~~i~G~R~~es--~~~~ 142 (181)
+|++++.++||++++++.|+.. +||+++++. .++||+|.|++|+ .|.+
T Consensus 152 ~~~d~v~~~ygl~i~~~~P~~~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~--~~awitG~Rr~Qs~~~Ra~ 229 (457)
T PLN02309 152 RLFDAVEKHYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRAE 229 (457)
T ss_pred HHHHHHHHHhCCceEEECCCcchHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhh--CCEEEEeeccccCcccccc
Confidence 9999999999999998876310 378888865 6799999999996 4667
Q ss_pred CcccCCCC------CCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 143 QEQFSPSS------PGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 143 ~~~~~~~~------~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
+..++... .++.+.+|+|||++||..|||.||..|++
T Consensus 230 l~~ve~d~~~~~~~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~l 272 (457)
T PLN02309 230 VPVVQVDPVFEGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDV 272 (457)
T ss_pred CCeeeecccccccccCCCCeeEEcccccCCHHHHHHHHHHcCC
Confidence 77766532 12345899999999999999999999986
No 13
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.96 E-value=1.3e-28 Score=213.56 Aligned_cols=140 Identities=16% Similarity=0.265 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhh
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTAS 100 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~ 100 (181)
.+.++|+++++.|+ +++++++|||+|+ ||+||+.++. .++++||+|||.+||||++|++++.+
T Consensus 102 ~~~eil~~a~~~f~-~~iavasSG~eds-vLlhl~~~~~---------------~~ipV~flDTG~lFpETy~~~d~v~~ 164 (463)
T TIGR00424 102 SPLEIMDKALEKFG-NDIAIAFSGAEDV-ALIEYAHLTG---------------RPFRVFSLDTGRLNPETYRFFDAVEK 164 (463)
T ss_pred CHHHHHHHHHHhcC-CCEEEEeccHHHH-HHHHHHHHhC---------------CCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999986 6899999988886 6899998873 46999999999999999999999999
Q ss_pred hcCceEEEEcccH--------------------H--------HHHHHHHHhCCCcEEEEeeeCCCcc--ccCCcccCCCC
Q 030189 101 KYVLQLDIIRSDF--------------------K--------SGLEALLNAKPIRAIFLGVRIGDPT--AVGQEQFSPSS 150 (181)
Q Consensus 101 ~~~l~~~~~~~~~--------------------k--------~~l~~~~~~~~~~~~i~G~R~~es~--~~~~~~~~~~~ 150 (181)
+||++++++.|+. + +||+++++. .++||+|.|++|+. |+.+..++...
T Consensus 165 ~ygl~l~~~~p~~~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~--~~awitG~Rr~Qs~~tRa~~~~ve~d~ 242 (463)
T TIGR00424 165 QYGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LKAWITGQRKDQSPGTRSEIPVVQVDP 242 (463)
T ss_pred HhCCceEEECCCcchHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHh--CCcEEeeeccccCccccccCCcccccc
Confidence 9999999887631 0 378888864 67999999999964 55666555421
Q ss_pred ------CCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 151 ------PGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 151 ------~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
.++++.+|+|||++||.+|||.||..|++
T Consensus 243 ~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~L 277 (463)
T TIGR00424 243 VFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDV 277 (463)
T ss_pred cccccccCCCceEEEeecccCCHHHHHHHHHHcCC
Confidence 12345899999999999999999999986
No 14
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.95 E-value=1.6e-27 Score=180.31 Aligned_cols=132 Identities=29% Similarity=0.402 Sum_probs=107.1
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK-- 114 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k-- 114 (181)
+++|+|||||||+|+|||+.++.... .++.++|+|||.+||+++++++++++.||+++.++.++..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~------------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL------------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPA 68 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc------------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHH
Confidence 47999999999999999999874200 2689999999999999999999999999999988765310
Q ss_pred --------------------------HHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCchH
Q 030189 115 --------------------------SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYR 168 (181)
Q Consensus 115 --------------------------~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~ 168 (181)
+++.+++++.+..++++|+|+||+.++...........+++..+++||++|+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~~~~~~~~~~~~~Pl~~w~~~ 148 (173)
T cd01713 69 EGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVWTDDGKGGILKVNPLLDWTYE 148 (173)
T ss_pred HHHHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCccccccCCCCCcEEEcchhcCCHH
Confidence 368888888788999999999998765443221112234578899999999999
Q ss_pred HHHHHHhccccC
Q 030189 169 LLINNKLFGFIG 180 (181)
Q Consensus 169 dVw~yi~~~~~~ 180 (181)
|||+|+..+++-
T Consensus 149 di~~~~~~~~l~ 160 (173)
T cd01713 149 DVWAYLARHGLP 160 (173)
T ss_pred HHHHHHHHcCCC
Confidence 999999998763
No 15
>PRK08576 hypothetical protein; Provisional
Probab=99.94 E-value=4e-26 Score=196.82 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=118.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH
Q 030189 11 DDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE 90 (181)
Q Consensus 11 ~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe 90 (181)
|...|+..++.+.+.++ .|+..+++|+|||||||+|+|||+.++. .++.+||+|||.+||+
T Consensus 214 N~~~le~~e~~~~~~Lr----~~~~~rVvVafSGGKDStvLL~La~k~~---------------~~V~aV~iDTG~e~pe 274 (438)
T PRK08576 214 NREVLEAFEKASIKFLR----KFEEWTVIVPWSGGKDSTAALLLAKKAF---------------GDVTAVYVDTGYEMPL 274 (438)
T ss_pred hHHHHHHHHHHHHHHHH----HcCCCCEEEEEcChHHHHHHHHHHHHhC---------------CCCEEEEeCCCCCChH
Confidence 44455555555544444 4654589999999999999999998874 2489999999999999
Q ss_pred HHHHHHHHhhhcCceEEE--Ecc----------c--------H-HHHHHHHHHhCCCcEEEEeeeCCCccccCCc-ccCC
Q 030189 91 INSFTYDTASKYVLQLDI--IRS----------D--------F-KSGLEALLNAKPIRAIFLGVRIGDPTAVGQE-QFSP 148 (181)
Q Consensus 91 ~~~f~~~~~~~~~l~~~~--~~~----------~--------~-k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~-~~~~ 148 (181)
++++++++++.+|+++++ +.. + . .++|.+++++.+..++++|+|++|+..+.+. ....
T Consensus 275 t~e~~~~lae~LGI~lii~~v~~~~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~~R~~~p~v~~ 354 (438)
T PRK08576 275 TDEYVEKVAEKLGVDLIRAGVDVPMPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESARRRLRPPVVE 354 (438)
T ss_pred HHHHHHHHHHHcCCCEEEcccCHHHHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhHHhhcCCcccc
Confidence 999999999999999977 221 0 1 1478888888888899999999998755544 3333
Q ss_pred CCCCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 149 SSPGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 149 ~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.+.++++..+++||++|++.|||.|+..|++-
T Consensus 355 ~~~~~~~v~rI~PL~~Wte~DV~~YI~~~gLP 386 (438)
T PRK08576 355 RKTNFGKILVVMPIKFWSGAMVQLYILMNGLE 386 (438)
T ss_pred cccCCCCeEEEeChhhCCHHHHHHHHHHhCCC
Confidence 33345578899999999999999999999874
No 16
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=99.94 E-value=4.8e-26 Score=177.93 Aligned_cols=118 Identities=15% Similarity=0.242 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccH----------
Q 030189 44 GGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDF---------- 113 (181)
Q Consensus 44 GGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~---------- 113 (181)
+|.||+|+|||+.++. .+++++|+|||.+||||++|+++++++||++++++.++.
T Consensus 1 f~~~s~Vll~L~~~~~---------------~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~ 65 (191)
T TIGR02055 1 LGAEDVVLVDLAAKVR---------------PDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEY 65 (191)
T ss_pred CChHHHHHHHHHHhcC---------------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHc
Confidence 5899999999999985 368999999999999999999999999999999986531
Q ss_pred ------------------HHHHHHHHHhCCCcEEEEeeeCCCccccCC-cccCCCCCCCCCeeEEecccCCchHHHHHHH
Q 030189 114 ------------------KSGLEALLNAKPIRAIFLGVRIGDPTAVGQ-EQFSPSSPGWPPFMRVNPILDWSYRLLINNK 174 (181)
Q Consensus 114 ------------------k~~l~~~~~~~~~~~~i~G~R~~es~~~~~-~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi 174 (181)
.+||.+++++ .++||+|+|++||..|.. ..++. +.. .+.++++||++||+.|||.||
T Consensus 66 G~~~~~~~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~~R~~~~~~~~-~~~-~~~~~~~Pi~~Wt~~dVw~Yi 141 (191)
T TIGR02055 66 GLNLFYRSVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSPTRAQAPFLEI-DEA-FGLVKINPLADWTSEDVWEYI 141 (191)
T ss_pred CcccccccchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCchhcCCceeee-cCC-CCeEEEEecccCCHHHHHHHH
Confidence 0367777754 679999999999775544 34443 322 358899999999999999999
Q ss_pred hccccC
Q 030189 175 LFGFIG 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
+.|++-
T Consensus 142 ~~~~lp 147 (191)
T TIGR02055 142 ADNELP 147 (191)
T ss_pred HHcCCC
Confidence 999873
No 17
>PRK06850 hypothetical protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=189.10 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFT 95 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~ 95 (181)
.+.++.+++.|++.+...+ .+++|||||||||+|+|+|+..+....+.. + ...++.|+|.|||.++|++++|+
T Consensus 16 ~~~~~~~i~~i~~~Y~~~~-~P~vV~fSGGKDStavL~Lv~~Al~~lp~e-----~-r~k~v~Vi~~DTgvE~Pe~~~~v 88 (507)
T PRK06850 16 GEPIEELIEEIQELYCADN-RPWVIGYSGGKDSTAVLQLVWNALAGLPPE-----K-RTKPVYVISSDTLVENPVVVDWV 88 (507)
T ss_pred hHHHHHHHHHHHHHHhcCC-CCeEEeCCCCchHHHHHHHHHHHHHhcchh-----c-cCCcEEEEECCCCCccHHHHHHH
Confidence 6677788888888776543 579999999999999999999986422111 0 01368899999999999999998
Q ss_pred HHHh-------hhcCceEE--EEcccH---------------------------H-HHHHHHHH----hCCCcEEEEeee
Q 030189 96 YDTA-------SKYVLQLD--IIRSDF---------------------------K-SGLEALLN----AKPIRAIFLGVR 134 (181)
Q Consensus 96 ~~~~-------~~~~l~~~--~~~~~~---------------------------k-~~l~~~~~----~~~~~~~i~G~R 134 (181)
+++. +++|+++. ++.|+. | .|+.++++ ..+..++++|+|
T Consensus 89 ~~~l~~i~~~a~~~glpi~~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR 168 (507)
T PRK06850 89 NKSLERINEAAKKQGLPITPHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVR 168 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEee
Confidence 7663 46787764 455531 1 36666664 456789999999
Q ss_pred CCCccccCCc--ccCCC------CCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 135 IGDPTAVGQE--QFSPS------SPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 135 ~~es~~~~~~--~~~~~------~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
++||.+|+.. ..+.. ....|+.+.++||.+|+.+|||.||..+..
T Consensus 169 ~~ES~~RA~~m~~~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~ 221 (507)
T PRK06850 169 KAESAARAQVMAKHEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWEN 221 (507)
T ss_pred ccccHHHHhhhhhhcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCC
Confidence 9998765543 11111 112367889999999999999999998653
No 18
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.92 E-value=3.7e-24 Score=184.93 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHH-----
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDT----- 98 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~----- 98 (181)
+.|++.+...+ .+++|+|||||||+|+|+|+..|+...+.+ + ...++.|+|.|||.+||++++|++++
T Consensus 3 ~~i~~~y~~~~-~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e-----~-~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~ 75 (447)
T TIGR03183 3 EEIQELYLSDD-IPWVVGYSGGKDSTAVLQLIWNALAALPAE-----Q-RTKKIHVISTDTLVENPIVAAWVNASLERMQ 75 (447)
T ss_pred HHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHHHhcccc-----c-cCcceEEEECcCCCccHHHHHHHHHHHHHHH
Confidence 34566665543 578999999999999999999986422211 0 01358889999999999999998764
Q ss_pred --hhhcCceE--EEEcccH---------------------------H-HHHHHHHH----hCCCcEEEEeeeCCCccccC
Q 030189 99 --ASKYVLQL--DIIRSDF---------------------------K-SGLEALLN----AKPIRAIFLGVRIGDPTAVG 142 (181)
Q Consensus 99 --~~~~~l~~--~~~~~~~---------------------------k-~~l~~~~~----~~~~~~~i~G~R~~es~~~~ 142 (181)
++++|+++ +++.|+. | +|+.++++ ..+..++++|+|++||.+|+
T Consensus 76 ~~a~~~~lpi~~~~v~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA 155 (447)
T TIGR03183 76 EAAQDQGLPIEPHRLTPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARA 155 (447)
T ss_pred HHHHHcCCCeEEEecCCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHH
Confidence 35666655 4555531 1 36666654 45678999999999987655
Q ss_pred Ccc--cCC--------CCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 143 QEQ--FSP--------SSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 143 ~~~--~~~--------~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
... .+. .....++.+.++||.+|+.+|||.||..+..
T Consensus 156 ~~m~k~e~~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~ 202 (447)
T TIGR03183 156 AVMEKHESGSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPN 202 (447)
T ss_pred hhhhhhccccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCC
Confidence 431 110 1112467889999999999999999998754
No 19
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=99.89 E-value=6.4e-23 Score=158.29 Aligned_cols=147 Identities=16% Similarity=0.294 Sum_probs=119.9
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHH
Q 030189 14 RLKTKYN--NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEI 91 (181)
Q Consensus 14 ~l~~~~~--~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~ 91 (181)
.|.+++. ++++++.|++.+|+ .-+.+|+| |..++|+++++.... .+++++|+||+..||||
T Consensus 24 ~l~kqL~~~sP~eIm~~al~tf~-~~~q~a~~-G~~~lvlid~~~~~~---------------~~~~l~~idT~~~~PeT 86 (261)
T KOG0189|consen 24 ELNKQLENLSPQEIMDWALETFP-NLFQTAAS-GLEGLVLIDMLSKTG---------------RPFRLFFIDTLHHFPET 86 (261)
T ss_pred HHHHHHhhCCHHHHHHHHHHHhh-hHHHHHhc-cccchHHHHHHHHcC---------------CCceeEEeeccccChHH
Confidence 3444444 58899999999996 67888998 557788888887763 46899999999999999
Q ss_pred HHHHHHHhhhcC-ceEEEEcccH-------H---------------------HHHHHHHHhCCCcEEEEeeeCCCccccC
Q 030189 92 NSFTYDTASKYV-LQLDIIRSDF-------K---------------------SGLEALLNAKPIRAIFLGVRIGDPTAVG 142 (181)
Q Consensus 92 ~~f~~~~~~~~~-l~~~~~~~~~-------k---------------------~~l~~~~~~~~~~~~i~G~R~~es~~~~ 142 (181)
+.+.+++.++|+ ++++++.|+- . +|++++++..+..+|+||.|++|+..|+
T Consensus 87 ~~l~d~VekkY~~i~I~~~~pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~gtRs 166 (261)
T KOG0189|consen 87 LRLFDAVEKKYGNIRIHVYFPDAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQGGTRS 166 (261)
T ss_pred HHHHHHHHHhcCceEEEEEcchhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCCCccc
Confidence 999999999998 9999999851 1 3889999888889999999999975554
Q ss_pred -CcccCCCCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 143 -QEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 143 -~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
+...+. |+ ..+.+++||+.+|+..|||+||..++.
T Consensus 167 elpiVqv-D~-~fellK~NPlaN~~~~dV~nyi~t~nV 202 (261)
T KOG0189|consen 167 ELPIVQV-DP-VFELLKINPLANWEFNDVWNYIRTNNV 202 (261)
T ss_pred ccceEEe-cC-ccceeeecccccccHHHHHHHHHhcCC
Confidence 444443 32 246899999999999999999998763
No 20
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=143.67 Aligned_cols=150 Identities=18% Similarity=0.255 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHH
Q 030189 19 YNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDT 98 (181)
Q Consensus 19 ~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~ 98 (181)
.+.++++|+.++..| ++|+|||||||||.|+|||+......... .++.|+|+|-.-.|..|.+|++++
T Consensus 13 ~eA~~eRl~~if~~f--~~VcVSFSGGKDS~lmLhL~~~~ar~~~~----------~~i~VlfiD~E~QYs~TidyV~em 80 (407)
T COG3969 13 LEAAIERLEWIFNTF--PRVCVSFSGGKDSGLMLHLVAEVARENGR----------DKISVLFIDWEAQYSCTIDYVQEM 80 (407)
T ss_pred HHHHHHHHHHHHhcC--CeEEEEecCCCchhHHHHHHHHHHHHhCC----------CceEEEEEcchhhhhhHHHHHHHH
Confidence 457889999999998 69999999999999999999998653221 369999999888899999999999
Q ss_pred hhhc-CceE---EEEcc-------c--------------------------------------------HHHHHHHHHHh
Q 030189 99 ASKY-VLQL---DIIRS-------D--------------------------------------------FKSGLEALLNA 123 (181)
Q Consensus 99 ~~~~-~l~~---~~~~~-------~--------------------------------------------~k~~l~~~~~~ 123 (181)
...| ++.- .+.-| + |...+.+.+..
T Consensus 81 ~~~~~dv~~~~yWvcLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~ 160 (407)
T COG3969 81 RESYHDVIETFYWVCLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQ 160 (407)
T ss_pred HhcccCccccceEEEeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhc
Confidence 8864 3211 11111 0 11245555655
Q ss_pred CC-CcEEEEeeeCCCccccCC--------cccC---CCCCCCCC--eeEEecccCCchHHHHHHHhccccC
Q 030189 124 KP-IRAIFLGVRIGDPTAVGQ--------EQFS---PSSPGWPP--FMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 124 ~~-~~~~i~G~R~~es~~~~~--------~~~~---~~~~~~~~--~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.. ..++++|+|.+||..|-. .... ++....++ ...+.||+||..+|||.+-.+++-.
T Consensus 161 ~~~~ta~LvGiRadESlNRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~ 231 (407)
T COG3969 161 KRPATAVLVGIRADESLNRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYA 231 (407)
T ss_pred cCCceEEEEeecchhhHHHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCc
Confidence 44 489999999999863321 1111 11112234 6779999999999999998887643
No 21
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.77 E-value=5.9e-19 Score=142.58 Aligned_cols=154 Identities=32% Similarity=0.514 Sum_probs=126.5
Q ss_pred HHHHHHHHHhcCC------CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHH
Q 030189 23 INVIQRTLALYSI------EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTY 96 (181)
Q Consensus 23 ~~~i~~~~~~~~~------~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~ 96 (181)
.+.+.++...+.. +.++.||+||||++|+++|+.+........+. ..+...++.+|++.+..||+..+|+.
T Consensus 64 ~e~i~~a~~i~~~~~~i~~E~~a~SFnggkdc~vll~ll~~~l~~~~~~~~---~~p~~~i~~~~~~~~~~fp~~~~fv~ 140 (282)
T KOG2644|consen 64 LEFILKAGGIGPTHDDITQEEMALSFNGGKDCTVLLLLLMRYLRDEYAEKL---DQPSTAIPAVYIDVEDSFPELEDFVS 140 (282)
T ss_pred HHHHHHhhccCCccchhhHHHHHHhhCCCCChHHHHHHHHHHhcchhhhhc---cCCCccccceeecCCCCcccccchHH
Confidence 5566666655544 67899999999999999999987531110000 01124689999999999999999999
Q ss_pred HHhhhcCceEEEEccc--HHHHHHHHHHhCC-CcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHHHH
Q 030189 97 DTASKYVLQLDIIRSD--FKSGLEALLNAKP-IRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINN 173 (181)
Q Consensus 97 ~~~~~~~l~~~~~~~~--~k~~l~~~~~~~~-~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~y 173 (181)
....+|.+.+..+... +++++..+.+... .+.+++|.|..|+....+.++++++..||+++|.+|+++|++.|||.|
T Consensus 141 ~~~~~y~~~l~~~~~~~~lk~~~~~~~~~~~~~k~i~vg~r~~dp~g~~~~~~~~td~~wp~~~r~~pll~ws~t~vw~~ 220 (282)
T KOG2644|consen 141 VCVFKYRPQLSRLSGAGRLKKALSLFKKVDPESKAILVGIRNTDPVGEALAPFERTDSLWPQFMRLLPLLEWSYTDVWDL 220 (282)
T ss_pred HHHHhhccchhhccCcchHHHHHHHhhhhhhhhhhHhhhhhhCCCccceecceeeccCCchhhhhhcccccchHHHHHHH
Confidence 9999999998876665 8889988888755 788999999999988888899999999999999999999999999999
Q ss_pred Hhcccc
Q 030189 174 KLFGFI 179 (181)
Q Consensus 174 i~~~~~ 179 (181)
++..+.
T Consensus 221 l~~~~~ 226 (282)
T KOG2644|consen 221 LREGNL 226 (282)
T ss_pred HhcCCC
Confidence 998753
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.77 E-value=1.5e-17 Score=128.46 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=100.3
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--hHHHHHHHHHhhhcCceEEEEccc--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--PEINSFTYDTASKYVLQLDIIRSD-- 112 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--pe~~~f~~~~~~~~~l~~~~~~~~-- 112 (181)
+++|++|||+||+|+++++.++.... ..++.++|+|+|..+ ++..++++++++.+|+++.++...
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~-----------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 69 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL-----------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALA 69 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc-----------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccc
Confidence 47999999999999999998875311 146999999999876 489999999999999999876211
Q ss_pred --------------HHHHHHHHHHhCCCcEEEEeeeCCCccccC---------CcccCC--CCCCCCCeeEEecccCCch
Q 030189 113 --------------FKSGLEALLNAKPIRAIFLGVRIGDPTAVG---------QEQFSP--SSPGWPPFMRVNPILDWSY 167 (181)
Q Consensus 113 --------------~k~~l~~~~~~~~~~~~i~G~R~~es~~~~---------~~~~~~--~~~~~~~~~~i~Pi~~Wt~ 167 (181)
....+.++..+.+.+.+++|++.+|..... ...+.. ......+...++||.+|+.
T Consensus 70 ~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~~k 149 (185)
T cd01992 70 PKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGITR 149 (185)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCCCH
Confidence 113466777788999999999999943211 111111 1112345678999999999
Q ss_pred HHHHHHHhccccC
Q 030189 168 RLLINNKLFGFIG 180 (181)
Q Consensus 168 ~dVw~yi~~~~~~ 180 (181)
.|||.|..++++.
T Consensus 150 ~eI~~~~~~~~l~ 162 (185)
T cd01992 150 AEIEAYLRENGLP 162 (185)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998764
No 23
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.76 E-value=2e-17 Score=128.41 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=97.9
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--hHHHHHHHHHhhhcCceEEEEccc--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--PEINSFTYDTASKYVLQLDIIRSD-- 112 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--pe~~~f~~~~~~~~~l~~~~~~~~-- 112 (181)
+++|++||||||+|+++++..+.... ..++.++|+|+|... ++..+.++++++.+|+++.++..+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~-----------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 69 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL-----------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVK 69 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc-----------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecch
Confidence 58999999999999999999874311 136899999999753 567888999999999998776532
Q ss_pred ---------HH--------HHHHHHHHhCCCcEEEEeeeCCCcc-c------cC-----CcccCCCCCCCCCeeEEeccc
Q 030189 113 ---------FK--------SGLEALLNAKPIRAIFLGVRIGDPT-A------VG-----QEQFSPSSPGWPPFMRVNPIL 163 (181)
Q Consensus 113 ---------~k--------~~l~~~~~~~~~~~~i~G~R~~es~-~------~~-----~~~~~~~~~~~~~~~~i~Pi~ 163 (181)
+. ..+.++.+++|.+.+++|++.+|.. + ++ +..+.+......+...++||+
T Consensus 70 ~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~ 149 (189)
T TIGR02432 70 ALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLL 149 (189)
T ss_pred hhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECCCC
Confidence 11 2466667778999999999999942 1 11 122222111111466899999
Q ss_pred CCchHHHHHHHhccccC
Q 030189 164 DWSYRLLINNKLFGFIG 180 (181)
Q Consensus 164 ~Wt~~dVw~yi~~~~~~ 180 (181)
+|+..|||.|.+++++-
T Consensus 150 ~~~k~ei~~~~~~~~lp 166 (189)
T TIGR02432 150 GISKSEIEEYLKENGLP 166 (189)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 99999999999998874
No 24
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.74 E-value=6.1e-17 Score=124.67 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=98.1
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--hHHHHHHHHHhhhcCceEEEEccc--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--PEINSFTYDTASKYVLQLDIIRSD-- 112 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--pe~~~f~~~~~~~~~l~~~~~~~~-- 112 (181)
+++|++||||||+++++++.+.....+ ...++.++|+|+|... ++..++++++++.+|+++.++..+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~---------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 71 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP---------YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC---------CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh
Confidence 589999999999999999998743110 0146888999999753 678899999999999998776542
Q ss_pred H----------------------HHHHHHHHHhCCCcEEEEeeeCCCccc---------cC---CcccCCCCCCCCCeeE
Q 030189 113 F----------------------KSGLEALLNAKPIRAIFLGVRIGDPTA---------VG---QEQFSPSSPGWPPFMR 158 (181)
Q Consensus 113 ~----------------------k~~l~~~~~~~~~~~~i~G~R~~es~~---------~~---~~~~~~~~~~~~~~~~ 158 (181)
+ ...+.++.++.+.+++++|++.||... ++ +...........+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~i 151 (185)
T cd01993 72 YTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMRPGPILYLDEGDVTR 151 (185)
T ss_pred cchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCccccCCCCceE
Confidence 0 023556667788999999999998421 11 1222110111234567
Q ss_pred EecccCCchHHHHHHHhccccC
Q 030189 159 VNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 159 i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
++||++|+..||+.|.+.+.+-
T Consensus 152 irPL~~~~k~eI~~~~~~~~l~ 173 (185)
T cd01993 152 IRPLVYVREKEIVLYAELNGLP 173 (185)
T ss_pred EeecccCCHHHHHHHHHHcCCC
Confidence 9999999999999999998764
No 25
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.70 E-value=4.3e-16 Score=126.93 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCC----CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHHHHH
Q 030189 21 NAINVIQRTLALYSI----EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEINSFT 95 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~----~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~~f~ 95 (181)
.....+.+++++|+. ++++||+|||+||+||||++....... ....++.++++|+|.. +++ +++
T Consensus 11 ~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~---------~~~~~l~av~vd~g~~~~~~--~~~ 79 (258)
T PRK10696 11 RLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRA---------PINFELVAVNLDQKQPGFPE--HVL 79 (258)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC---------CCCeEEEEEEecCCCCCCCH--HHH
Confidence 345556677777752 689999999999999999998753210 0114688899999853 432 367
Q ss_pred HHHhhhcCceEEEEcccH---------------------H-HHHHHHHHhCCCcEEEEeeeCCCcc---------ccCCc
Q 030189 96 YDTASKYVLQLDIIRSDF---------------------K-SGLEALLNAKPIRAIFLGVRIGDPT---------AVGQE 144 (181)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~---------------------k-~~l~~~~~~~~~~~~i~G~R~~es~---------~~~~~ 144 (181)
+++++.+|+++.++..+. + ..|.++..+.|.+.+++|++.||.. ..++.
T Consensus 80 ~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~l~ 159 (258)
T PRK10696 80 PEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGKLK 159 (258)
T ss_pred HHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCccc
Confidence 899999999987764321 0 1355666778899999999999832 11223
Q ss_pred ccCCCCC-CCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 145 QFSPSSP-GWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 145 ~~~~~~~-~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.+.+... ...+...++|+++++..||+.|...+++-
T Consensus 160 ~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp 196 (258)
T PRK10696 160 AMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFP 196 (258)
T ss_pred ccCCeeecCCCceeEEecCccCCHHHHHHHHHHcCCC
Confidence 3322111 11235689999999999999999998764
No 26
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.67 E-value=4.1e-16 Score=120.73 Aligned_cols=133 Identities=21% Similarity=0.244 Sum_probs=88.3
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--hHHHHHHHHHhhhcCceEEEEcccH-
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--PEINSFTYDTASKYVLQLDIIRSDF- 113 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--pe~~~f~~~~~~~~~l~~~~~~~~~- 113 (181)
+|+||+||||||++|||++....... ..++.++++|+|... .+-.++++++++.+|+++.+...+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~-----------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~ 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN-----------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT-----------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc-----------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee
Confidence 48999999999999999999874311 146999999998642 3567899999999999998876532
Q ss_pred --------------H-HHHHHHHHhCCCcEEEEeeeCCCcc-c-----------cCCcccCCCCCCCCCeeEEecccCCc
Q 030189 114 --------------K-SGLEALLNAKPIRAIFLGVRIGDPT-A-----------VGQEQFSPSSPGWPPFMRVNPILDWS 166 (181)
Q Consensus 114 --------------k-~~l~~~~~~~~~~~~i~G~R~~es~-~-----------~~~~~~~~~~~~~~~~~~i~Pi~~Wt 166 (181)
+ +.|.++..+.+.+.+++|++.||.. . .++..+.+.. ...+...++||++.+
T Consensus 70 ~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~-~~~~~~~iRPLl~~~ 148 (182)
T PF01171_consen 70 RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVS-PFKGIKLIRPLLYVS 148 (182)
T ss_dssp CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEE-EETTCEEE-GGGCS-
T ss_pred ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhccccccc-cccCcccCCcchhCC
Confidence 1 2567777788899999999999942 1 1222222221 113467899999999
Q ss_pred hHHHHHHHhccccCC
Q 030189 167 YRLLINNKLFGFIGF 181 (181)
Q Consensus 167 ~~dVw~yi~~~~~~~ 181 (181)
++||-.|...+++-|
T Consensus 149 k~ei~~~~~~~~i~~ 163 (182)
T PF01171_consen 149 KDEIRAYAKENGIPY 163 (182)
T ss_dssp HHHHHHHHHHTT-SS
T ss_pred HHHHHHHHHHCCCcE
Confidence 999999999998754
No 27
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2e-14 Score=118.77 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=98.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--hHHHHHHHHHhhhcCceEEEEccc-
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--PEINSFTYDTASKYVLQLDIIRSD- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--pe~~~f~~~~~~~~~l~~~~~~~~- 112 (181)
++|+||+||||||+++||++...... .++.+++||+|..- ....++++++++.+++++++.+-.
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~-------------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 88 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR-------------IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTD 88 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC-------------ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEe
Confidence 79999999999999999999987420 36889999999653 577889999999999876654421
Q ss_pred -----------HH--------HHHHHHHHhCCCcEEEEeeeCCCcc--------ccC----CcccCCCCCCCCCe-eEEe
Q 030189 113 -----------FK--------SGLEALLNAKPIRAIFLGVRIGDPT--------AVG----QEQFSPSSPGWPPF-MRVN 160 (181)
Q Consensus 113 -----------~k--------~~l~~~~~~~~~~~~i~G~R~~es~--------~~~----~~~~~~~~~~~~~~-~~i~ 160 (181)
+. ..+.++.++.|.+.++||+++||.. +.+ +..+.+... ..+. ..++
T Consensus 89 ~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~~~~-~~~~~~~iR 167 (298)
T COG0037 89 DLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPPKRP-FEGGLLIIR 167 (298)
T ss_pred eccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHhhHHhhCCcccc-cCCCCeeee
Confidence 11 2467778888999999999999942 111 222333221 1233 6899
Q ss_pred cccCCchHHHHHHHhccccC
Q 030189 161 PILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 161 Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
|++.++..+|..|...+.+.
T Consensus 168 PL~~~~~~ei~~~~~~~~l~ 187 (298)
T COG0037 168 PLLYVREKEIELYAKEKGLP 187 (298)
T ss_pred ecccCCHHHHHHHHHHcCCC
Confidence 99999999999999998875
No 28
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.55 E-value=6.6e-14 Score=109.81 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=93.9
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc-----
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD----- 112 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~----- 112 (181)
|+|++|||+||+++++++.+... .++.++++|+|...++..++++++++.+|++++++..+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~--------------~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~ 66 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG--------------DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELDDP 66 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC--------------CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccccH
Confidence 58999999999999999988741 25888999999777788899999999999998877532
Q ss_pred -H---------------HHHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEeccc--CCchHHHHHHH
Q 030189 113 -F---------------KSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPIL--DWSYRLLINNK 174 (181)
Q Consensus 113 -~---------------k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~--~Wt~~dVw~yi 174 (181)
+ .+.+.++.++.|..++++|+..+|... ....+... .+...++||+ .++..||..|.
T Consensus 67 ~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e-~~~~~~~~----~~~~iirPL~~~~~~K~ei~~~a 141 (202)
T cd01990 67 EFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGD-YRPGLKAL----RELGVRSPLAEAGLGKAEIRELA 141 (202)
T ss_pred HHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcc-cChHHHHH----HHcCCcCchhhcCCCHHHHHHHH
Confidence 1 023555666778999999999998542 11111110 0123589999 59999999999
Q ss_pred hccccC
Q 030189 175 LFGFIG 180 (181)
Q Consensus 175 ~~~~~~ 180 (181)
.++.+.
T Consensus 142 ~~~gl~ 147 (202)
T cd01990 142 RELGLP 147 (202)
T ss_pred HHcCCC
Confidence 998764
No 29
>PRK00919 GMP synthase subunit B; Validated
Probab=99.50 E-value=1e-12 Score=109.45 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF 94 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f 94 (181)
++..+++.++.|++.+ +.++++|+||||+||+|+++++.++.. .++.++|+|+|....+-.++
T Consensus 4 ~~~~~~~~~~~l~~~~---~~~kVlVa~SGGVDSsvla~la~~~lG--------------~~v~aV~vD~G~~~~~E~e~ 66 (307)
T PRK00919 4 PEKFIEEAIEEIREEI---GDGKAIIALSGGVDSSVAAVLAHRAIG--------------DRLTPVFVDTGLMRKGETER 66 (307)
T ss_pred HHHHHHHHHHHHHHHh---CCCCEEEEecCCHHHHHHHHHHHHHhC--------------CeEEEEEEECCCCCHHHHHH
Confidence 4556667777777665 447999999999999999999988742 46899999999876656677
Q ss_pred HHHHhhhcCceEEEEccc--H------------H---------HHHHHHHHhCCCcEEEEeeeCCCc-c-ccCCcccCCC
Q 030189 95 TYDTASKYVLQLDIIRSD--F------------K---------SGLEALLNAKPIRAIFLGVRIGDP-T-AVGQEQFSPS 149 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~--~------------k---------~~l~~~~~~~~~~~~i~G~R~~es-~-~~~~~~~~~~ 149 (181)
+.++++.+ +++.++..+ + + +.+.++.++.|.+.+++|+..+|. . +.+++.....
T Consensus 67 a~~~~~~~-i~~~vvd~~e~fl~~L~~v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~~nv 145 (307)
T PRK00919 67 IKETFSDM-LNLRIVDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSHHNV 145 (307)
T ss_pred HHHHHhcc-CCcEEEECCHHHHHhccCCCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCcccccccc
Confidence 77777775 666655422 1 1 123455556788999999999883 2 2222111000
Q ss_pred C--CCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 150 S--PGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 150 ~--~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
. +...++-.+.||.+++.+||..|.+.+++
T Consensus 146 ~gl~~~~~~~Ii~PL~~l~K~EVr~la~~lGL 177 (307)
T PRK00919 146 GGLPEGMVLKIVEPLRDLYKDEVREVARALGL 177 (307)
T ss_pred cccChhhcCCcccCchhCcHHHHHHHHHHcCC
Confidence 0 01113447999999999999999988765
No 30
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.50 E-value=5.1e-13 Score=118.42 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHH
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEI 91 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~ 91 (181)
=.++..+++.++.|++.++. ++++||+|||+||+|+++++.++.. .++.++|+|+|.. -+|.
T Consensus 196 ~~~~~~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll~~~lg--------------~~v~av~vd~g~~~~~e~ 258 (511)
T PRK00074 196 WTMENFIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLLHKAIG--------------DQLTCVFVDHGLLRKNEA 258 (511)
T ss_pred ccHHHHHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHHHHHhC--------------CceEEEEEeCCCCCHHHH
Confidence 34666777777777776653 7899999999999999999998742 4689999999964 4688
Q ss_pred HHHHHHHhhhcCceEEEEccc--H---------------------HHHHHHHHHhC-CCcEEEEeeeCCCc-cccCCcc-
Q 030189 92 NSFTYDTASKYVLQLDIIRSD--F---------------------KSGLEALLNAK-PIRAIFLGVRIGDP-TAVGQEQ- 145 (181)
Q Consensus 92 ~~f~~~~~~~~~l~~~~~~~~--~---------------------k~~l~~~~~~~-~~~~~i~G~R~~es-~~~~~~~- 145 (181)
.++.+.+++.+|++++++..+ + ...+++..++. +.+.+++|+..+|. ..+.+..
T Consensus 259 ~~~~~~~a~~lgi~~~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~ 338 (511)
T PRK00074 259 EQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKA 338 (511)
T ss_pred HHHHHHHHHHcCCcEEEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcCCCCc
Confidence 888888889999999887632 1 12356666677 88999999999884 3332220
Q ss_pred --cC-CC-CCCCC---CeeEEecccCCchHHHHHHHhccccC
Q 030189 146 --FS-PS-SPGWP---PFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 146 --~~-~~-~~~~~---~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
+. -. -.+.+ ..-.++||.+++.+||-.|.+.+++-
T Consensus 339 ~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp 380 (511)
T PRK00074 339 ATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLP 380 (511)
T ss_pred cccccccCccCcChhHhcccccchhhcCHHHHHHHHHHcCCC
Confidence 00 00 00111 13478999999999999999988763
No 31
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.49 E-value=8.7e-13 Score=107.20 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcC
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYV 103 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~ 103 (181)
+.|+..++.+ ++++|+||||+||+++++++.+.. .++.+|+++++...++-.+.++++++.+|
T Consensus 3 ~~l~~~l~~~--~~vlVa~SGGvDSs~ll~la~~~g---------------~~v~av~~~~~~~~~~e~~~a~~~a~~lg 65 (252)
T TIGR00268 3 ENLRNFLKEF--KKVLIAYSGGVDSSLLAAVCSDAG---------------TEVLAITVVSPSISPRELEDAIIIAKEIG 65 (252)
T ss_pred HHHHHHHHhc--CCEEEEecCcHHHHHHHHHHHHhC---------------CCEEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 4466666665 689999999999999999998762 36889999987655666788999999999
Q ss_pred ceEEEEcccH-----H---------------HHHHHHHHhCCCcEEEEeeeCCCcc--ccCCcccCCCCCCCCCeeEEec
Q 030189 104 LQLDIIRSDF-----K---------------SGLEALLNAKPIRAIFLGVRIGDPT--AVGQEQFSPSSPGWPPFMRVNP 161 (181)
Q Consensus 104 l~~~~~~~~~-----k---------------~~l~~~~~~~~~~~~i~G~R~~es~--~~~~~~~~~~~~~~~~~~~i~P 161 (181)
++.+++..+. . ..+.++.++.|..++++|+..+|-. +.++..... ....+|
T Consensus 66 i~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~-------~~~~~P 138 (252)
T TIGR00268 66 VNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKE-------FNGVSP 138 (252)
T ss_pred CCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHH-------cCCCCc
Confidence 9988775321 1 1244556667889999999999843 222222111 112499
Q ss_pred ccC--CchHHHHHHHhccccC
Q 030189 162 ILD--WSYRLLINNKLFGFIG 180 (181)
Q Consensus 162 i~~--Wt~~dVw~yi~~~~~~ 180 (181)
+.+ ++..||..|..+.++-
T Consensus 139 L~~~~l~K~eIr~la~~~gl~ 159 (252)
T TIGR00268 139 WAEFGITKKEIREIAKSLGIS 159 (252)
T ss_pred chhcCCCHHHHHHHHHHcCCC
Confidence 976 8999999999987753
No 32
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.48 E-value=6.1e-13 Score=115.87 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=93.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--chHHHHHHHHHhhhcCceEEEEcccH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--FPEINSFTYDTASKYVLQLDIIRSDF 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--fpe~~~f~~~~~~~~~l~~~~~~~~~ 113 (181)
++++||+|||+||+||||++...... . ...++.++|||+|.. ..+..+|++++|+.+|+++++.+-+.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~-~---------~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~ 85 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTE-N---------PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQL 85 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHh-c---------CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 78999999999999999999865310 0 014789999999963 34567999999999999987765321
Q ss_pred -------H--------HHHHHHHHhCCCcEEEEeeeCCCcc--------c-c---CCcccCCCCCCCCCeeEEecccCCc
Q 030189 114 -------K--------SGLEALLNAKPIRAIFLGVRIGDPT--------A-V---GQEQFSPSSPGWPPFMRVNPILDWS 166 (181)
Q Consensus 114 -------k--------~~l~~~~~~~~~~~~i~G~R~~es~--------~-~---~~~~~~~~~~~~~~~~~i~Pi~~Wt 166 (181)
. ..+.+..+. ..++++||+.||.. + . ++..+.+... ..+...++|+++.+
T Consensus 86 ~~~~~~~e~~AR~~Ry~~~~~~~~~--~~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~-~~~~~liRPLL~~~ 162 (436)
T PRK10660 86 DQRGLGIEAAARQARYQAFARTLLP--GEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSP-FAGTRLIRPLLARS 162 (436)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHh--CCEEEEcCchHHHHHHHHHHHHcCCChhhccccceecc-cCCCcEeCCCccCC
Confidence 1 123333333 35899999999842 1 1 2222322111 12345799999999
Q ss_pred hHHHHHHHhccccC
Q 030189 167 YRLLINNKLFGFIG 180 (181)
Q Consensus 167 ~~dVw~yi~~~~~~ 180 (181)
..||..|...+.+-
T Consensus 163 k~ei~~ya~~~~l~ 176 (436)
T PRK10660 163 REELEQYAQAHGLR 176 (436)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999998864
No 33
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.47 E-value=1e-12 Score=100.31 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=88.3
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc--c-H
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS--D-F 113 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~--~-~ 113 (181)
+++|++||||||+++++++.+.. .++.++++|.|....+-.++++++++.+| +...+.. . +
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 64 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG---------------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARNLIF 64 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC---------------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcCHHH
Confidence 47899999999999999998752 35888999988654334488999999999 3323222 1 2
Q ss_pred HHHHHHHHHhCCCcEEEEeeeCCCccc--c-------CCcccCCCCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 114 KSGLEALLNAKPIRAIFLGVRIGDPTA--V-------GQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 114 k~~l~~~~~~~~~~~~i~G~R~~es~~--~-------~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
...+.++..+.|.+.+++|+..+|... . ++..+.... ...++-.++|+..|+..||..+++.+++
T Consensus 65 ~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~PL~~~~K~ei~~~~~~~g~ 138 (169)
T cd01995 65 LSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLG-TENGIKIHAPLIDLSKAEIVRLGGELGV 138 (169)
T ss_pred HHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHHHHHHHHHhh-cCCCeEEEeCcccCCHHHHHHHHhHcCC
Confidence 345666777789999999999998421 0 111110000 1124556899999999999999998765
No 34
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.45 E-value=3.5e-12 Score=106.57 Aligned_cols=144 Identities=14% Similarity=0.076 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-hHHHHHHHH
Q 030189 19 YNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-PEINSFTYD 97 (181)
Q Consensus 19 ~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-pe~~~f~~~ 97 (181)
+++.++.|++.+. .++++|++|||+||+|+++++.++.. .++.++|+|+|..- .|..+..+.
T Consensus 3 ~~~~~~~l~~~v~---~~kVvValSGGVDSsvla~ll~~~~G--------------~~v~av~vd~G~~~~~E~e~~~~~ 65 (311)
T TIGR00884 3 IEEAVEEIREQVG---DAKVIIALSGGVDSSVAAVLAHRAIG--------------DRLTCVFVDHGLLRKGEAEQVVKT 65 (311)
T ss_pred HHHHHHHHHHHhC---CCcEEEEecCChHHHHHHHHHHHHhC--------------CCEEEEEEeCCCCChHHHHHHHHH
Confidence 3445566666553 37899999999999999999988742 36899999999753 466666666
Q ss_pred HhhhcCceEEEEcccH--------------H---------HHHHHHHHhCC-CcEEEEeeeCCCc-ccc-C----CcccC
Q 030189 98 TASKYVLQLDIIRSDF--------------K---------SGLEALLNAKP-IRAIFLGVRIGDP-TAV-G----QEQFS 147 (181)
Q Consensus 98 ~~~~~~l~~~~~~~~~--------------k---------~~l~~~~~~~~-~~~~i~G~R~~es-~~~-~----~~~~~ 147 (181)
+++.+|++++++..+. + +.+.++.++.+ .+.+++|+..+|- ..+ + ++...
T Consensus 66 ~~~~lgi~~~vvd~~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~ 145 (311)
T TIGR00884 66 FGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHH 145 (311)
T ss_pred HHHHcCCcEEEEeCcHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccC
Confidence 6778999988775421 0 12445555677 8899999999873 211 1 11111
Q ss_pred CCC--CCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 148 PSS--PGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 148 ~~~--~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
... ......-.+.||.+.+.+||..|-+.+++
T Consensus 146 ~~~gl~~~~~~~ii~PL~~l~K~EVr~la~~lgL 179 (311)
T TIGR00884 146 NVGGLPEDMKLKLVEPLRELFKDEVRKLGKELGL 179 (311)
T ss_pred ccccCChhhcCceEEEcccCcHHHHHHHHHHcCC
Confidence 100 00112447999999999999999988765
No 35
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.40 E-value=6.1e-12 Score=96.83 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=82.8
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH-----HHHHHHHHhhhcCceE--EEE
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE-----INSFTYDTASKYVLQL--DII 109 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe-----~~~f~~~~~~~~~l~~--~~~ 109 (181)
+++|++|||+||+++++++.+.. .++.++|+|+|..-.+ ..+..+.+ +.|+.++ .++
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g---------------~~v~av~~d~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v 64 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG---------------IEVDALHFNSGPFTSEKAREKVEDLARKL-ARYSPGHKLVVI 64 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC---------------CeEEEEEEeCCCCCchHHHHHHHHHHHHH-HHhCCCCceEEE
Confidence 47899999999999999998752 4688999999975432 33434333 4555433 333
Q ss_pred cccH-----------------------HHHHHHHHHhCCCcEEEEeeeCCCc-cccCCcccCCCCCCCCCeeEEecccCC
Q 030189 110 RSDF-----------------------KSGLEALLNAKPIRAIFLGVRIGDP-TAVGQEQFSPSSPGWPPFMRVNPILDW 165 (181)
Q Consensus 110 ~~~~-----------------------k~~l~~~~~~~~~~~~i~G~R~~es-~~~~~~~~~~~~~~~~~~~~i~Pi~~W 165 (181)
.... ...+.++.++.+.+.+++|+..+|- ........... ...+...++|++.|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~--~~~~~~i~rPl~~~ 142 (177)
T cd01712 65 IFTFFVQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVIS--SGTDLPILRPLIGF 142 (177)
T ss_pred eCcHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhcc--cCCCCeEECCCCCC
Confidence 3211 1124455567789999999999883 21111111111 11346689999999
Q ss_pred chHHHHHHHhcccc
Q 030189 166 SYRLLINNKLFGFI 179 (181)
Q Consensus 166 t~~dVw~yi~~~~~ 179 (181)
+..||+.|...+.+
T Consensus 143 ~K~eI~~~a~~~gl 156 (177)
T cd01712 143 DKEEIIGIARRIGT 156 (177)
T ss_pred CHHHHHHHHHHcCC
Confidence 99999999988765
No 36
>PRK14561 hypothetical protein; Provisional
Probab=99.38 E-value=9.6e-12 Score=97.45 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=84.3
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK-- 114 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k-- 114 (181)
+++|++||||||+++++++.+. .++.+++++.|. .++ .++++.+++.+|++.+++..+..
T Consensus 2 kV~ValSGG~DSslll~~l~~~----------------~~v~a~t~~~g~-~~e-~~~a~~~a~~lGi~~~~v~~~~~~~ 63 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF----------------YDVELVTVNFGV-LDS-WKHAREAAKALGFPHRVLELDREIL 63 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc----------------CCeEEEEEecCc-hhH-HHHHHHHHHHhCCCEEEEECCHHHH
Confidence 5899999999999999988654 146778888875 233 67899999999999988754310
Q ss_pred ---------------------H-HHHHHHHhCCCcEEEEeeeCCCccc-cCCcccCCCCCCCCCeeEEecccCCchHHHH
Q 030189 115 ---------------------S-GLEALLNAKPIRAIFLGVRIGDPTA-VGQEQFSPSSPGWPPFMRVNPILDWSYRLLI 171 (181)
Q Consensus 115 ---------------------~-~l~~~~~~~~~~~~i~G~R~~es~~-~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw 171 (181)
. .+.. +. .+..++++|++.||... -.+..+.... +..+...++||+.|+..||.
T Consensus 64 ~~~~~~~~~~~~P~~~~~~l~~~~l~~-~a-~g~~~Ia~G~n~DD~~et~~r~~~~a~~-~~~gi~iirPL~~~~K~eI~ 140 (194)
T PRK14561 64 EKAVDMIIEDGYPNNAIQYVHEHALEA-LA-EEYDVIADGTRRDDRVPKLSRSEIQSLE-DRKGVQYIRPLLGFGRKTID 140 (194)
T ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHH-HH-cCCCEEEEEecCCCcchhccHHHHhhhh-cCCCcEEEeeCCCCCHHHHH
Confidence 0 1122 22 67889999999999431 1111111111 11245578999999999999
Q ss_pred HHHhccc
Q 030189 172 NNKLFGF 178 (181)
Q Consensus 172 ~yi~~~~ 178 (181)
.|.+...
T Consensus 141 ~la~~l~ 147 (194)
T PRK14561 141 RLVERLF 147 (194)
T ss_pred HHHHhhE
Confidence 9987754
No 37
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.37 E-value=1.1e-11 Score=102.78 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=91.1
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEccc--H
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRSD--F 113 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~~--~ 113 (181)
+++|++|||+||+|+++|+.++.. .++.++|+|+|..-.+-.+.+.++++.+++ +++++..+ |
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG--------------~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~f 66 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIG--------------DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASERF 66 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhC--------------CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHHH
Confidence 478999999999999999998742 368999999997555556678888888876 88776543 1
Q ss_pred ------------H---------HHHHHHHHhCC-CcEEEEeeeCCCc-cccCCccc---CCCCC---CC---CCeeEEec
Q 030189 114 ------------K---------SGLEALLNAKP-IRAIFLGVRIGDP-TAVGQEQF---SPSSP---GW---PPFMRVNP 161 (181)
Q Consensus 114 ------------k---------~~l~~~~~~~~-~~~~i~G~R~~es-~~~~~~~~---~~~~~---~~---~~~~~i~P 161 (181)
+ +.+.++.++.| .+.+++|+..+|- ..+.+... -.+-+ +. .+.-.+.|
T Consensus 67 l~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~P 146 (295)
T cd01997 67 LSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEP 146 (295)
T ss_pred HHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccchHhhCCcccc
Confidence 0 13555666778 8999999999883 22221110 00000 11 12346899
Q ss_pred ccCCchHHHHHHHhcccc
Q 030189 162 ILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 162 i~~Wt~~dVw~yi~~~~~ 179 (181)
|.+++.+||..|.++.++
T Consensus 147 L~~l~K~EVR~lar~lGL 164 (295)
T cd01997 147 LRDLFKDEVRELGRELGL 164 (295)
T ss_pred cccCcHHHHHHHHHHcCC
Confidence 999999999999988764
No 38
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.32 E-value=3.5e-11 Score=102.01 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=91.0
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC----------chHHHHHHHHHhhhcCceE
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA----------FPEINSFTYDTASKYVLQL 106 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~----------fpe~~~f~~~~~~~~~l~~ 106 (181)
+|+|++|||+||+|+++++.+.. .++..+|++.+.. .++-.++++++++.+|+++
T Consensus 2 kVlValSGGvDSsvla~lL~~~G---------------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~ 66 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG---------------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPH 66 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC---------------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcE
Confidence 68999999999999999998752 3688899997642 2456788999999999998
Q ss_pred EEEccc--H----------------------------H-HHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCC----
Q 030189 107 DIIRSD--F----------------------------K-SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSP---- 151 (181)
Q Consensus 107 ~~~~~~--~----------------------------k-~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~---- 151 (181)
+++... + | ..|.++.++.+.+.++||+..++.....+ +...+.
T Consensus 67 ~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~~L--~rg~d~~kDq 144 (346)
T PRK00143 67 YVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGREL--LRGVDPNKDQ 144 (346)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccceE--EEccCCCcCh
Confidence 877531 1 1 13455566778999999999988421111 111000
Q ss_pred -----CCC--Ce-eEEecccCCchHHHHHHHhccccC
Q 030189 152 -----GWP--PF-MRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 152 -----~~~--~~-~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
..+ .+ ..+.||.+++.+||..|...+.+-
T Consensus 145 sy~l~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~ 181 (346)
T PRK00143 145 SYFLYQLTQEQLAKLLFPLGELTKPEVREIAEEAGLP 181 (346)
T ss_pred hhhhccCCHHHhcceeccCccCCHHHHHHHHHHcCCC
Confidence 011 11 368999999999999999998764
No 39
>PRK08349 hypothetical protein; Validated
Probab=99.31 E-value=1.8e-11 Score=96.00 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=82.4
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHHHHHHHHhhhcCceE---EEEcc-
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEINSFTYDTASKYVLQL---DIIRS- 111 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~~f~~~~~~~~~l~~---~~~~~- 111 (181)
++++++|||+||+|+++++.+.. .++.++|+|.+.. .....+.++.+.+.+|+++ +++..
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g---------------~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 66 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG---------------VEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAF 66 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC---------------CeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcch
Confidence 57899999999999999887642 4688999998532 2234455566655556653 33211
Q ss_pred -----c--------------------HHHHHHHHHHhCCCcEEEEeeeCCCccccC-CcccCCCCCCCCCeeEEecccCC
Q 030189 112 -----D--------------------FKSGLEALLNAKPIRAIFLGVRIGDPTAVG-QEQFSPSSPGWPPFMRVNPILDW 165 (181)
Q Consensus 112 -----~--------------------~k~~l~~~~~~~~~~~~i~G~R~~es~~~~-~~~~~~~~~~~~~~~~i~Pi~~W 165 (181)
. +...+.++..+.|.+.+++|++.+|..... +....... ..+...++|++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~--~~~i~i~rPL~~~ 144 (198)
T PRK08349 67 EEQGPVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVIST--ATDLPVLRPLIGL 144 (198)
T ss_pred HHhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhcccc--ccCCeEEcCCCCC
Confidence 0 112344556677899999999999843211 11111111 1234578999999
Q ss_pred chHHHHHHHhccc
Q 030189 166 SYRLLINNKLFGF 178 (181)
Q Consensus 166 t~~dVw~yi~~~~ 178 (181)
+..||..|.+.++
T Consensus 145 ~K~eI~~~a~~~g 157 (198)
T PRK08349 145 DKEEIVKIAKEIG 157 (198)
T ss_pred CHHHHHHHHHHcC
Confidence 9999999998865
No 40
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.28 E-value=7.1e-11 Score=100.34 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=87.0
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC----------CchHHHHHHHHHhhhcCceE
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS----------AFPEINSFTYDTASKYVLQL 106 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~----------~fpe~~~f~~~~~~~~~l~~ 106 (181)
+++|++|||+||+|+++|+.+.. .++..+|+++.. .-++-.+.++++++.+|+++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G---------------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~ 66 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG---------------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPL 66 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC---------------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCE
Confidence 68999999999999999998853 367888885321 12345677889999999999
Q ss_pred EEEcc--cH----------------------------H-HHHHHHHHhC-CCcEEEEeeeC---CCcc-ccCCcccCCCC
Q 030189 107 DIIRS--DF----------------------------K-SGLEALLNAK-PIRAIFLGVRI---GDPT-AVGQEQFSPSS 150 (181)
Q Consensus 107 ~~~~~--~~----------------------------k-~~l~~~~~~~-~~~~~i~G~R~---~es~-~~~~~~~~~~~ 150 (181)
+++.. .+ | ..|.+++.+. |.+.++||+.. ++.. .+-++......
T Consensus 67 ~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~k 146 (352)
T TIGR00420 67 EKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNK 146 (352)
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCc
Confidence 87753 11 1 1344555564 89999999976 3322 11122221111
Q ss_pred CC------CCC---eeEEecccCCchHHHHHHHhccccC
Q 030189 151 PG------WPP---FMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 151 ~~------~~~---~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.+ .+. ...++||.+|+..||..|...+++-
T Consensus 147 Dqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~ 185 (352)
T TIGR00420 147 DQSYFLYHLSHEQLAKLLFPLGELLKPEVRQIAKNAGLP 185 (352)
T ss_pred CcceecccCCHHHhhhhcccCCCCCHHHHHHHHHHcCCC
Confidence 00 011 2368999999999999999998763
No 41
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.26 E-value=6.4e-11 Score=94.95 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhc
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKY 102 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~ 102 (181)
++.++.+++.. .+++||||||+||++|+.++..+.. .+..+|+++++...+...+-....++.+
T Consensus 7 l~~l~~~ik~~--~kv~vAfSGGvDSslLa~la~~~lG--------------~~v~AvTv~sP~~p~~e~e~A~~~A~~i 70 (269)
T COG1606 7 LERLKKAIKEK--KKVVVAFSGGVDSSLLAKLAKEALG--------------DNVVAVTVDSPYIPRREIEEAKNIAKEI 70 (269)
T ss_pred HHHHHHHHhhc--CeEEEEecCCccHHHHHHHHHHHhc--------------cceEEEEEecCCCChhhhhHHHHHHHHh
Confidence 34556666654 4899999999999999999998863 4689999999998887777788889999
Q ss_pred CceEEEEcc-----cHH---------------HHHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 103 VLQLDIIRS-----DFK---------------SGLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 103 ~l~~~~~~~-----~~k---------------~~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
|++..++.. .++ +.|.+...+.|+++++-|+..+|..
T Consensus 71 Gi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~ 127 (269)
T COG1606 71 GIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLF 127 (269)
T ss_pred CCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhc
Confidence 999877653 222 3455666668999999999999964
No 42
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.23 E-value=2.4e-10 Score=97.02 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=89.0
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--------chHHHHHHHHHhhhcCceEEE
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--------FPEINSFTYDTASKYVLQLDI 108 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--------fpe~~~f~~~~~~~~~l~~~~ 108 (181)
+++|++|||+||+|+++++.+.. .++.++|++++.. -++-.++++++++.+|+++.+
T Consensus 1 kVlValSGGvDSsvla~lL~~~g---------------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~v 65 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG---------------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYV 65 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC---------------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 47999999999999999998752 3678889987632 235568899999999999887
Q ss_pred Eccc--HH-----------------------------HHHHHHHHhCCCcEEEEeeeCCCcccc-C-CcccCCCCC----
Q 030189 109 IRSD--FK-----------------------------SGLEALLNAKPIRAIFLGVRIGDPTAV-G-QEQFSPSSP---- 151 (181)
Q Consensus 109 ~~~~--~k-----------------------------~~l~~~~~~~~~~~~i~G~R~~es~~~-~-~~~~~~~~~---- 151 (181)
+..+ +. ..|.++.++.+.+.++||+..++.... . ...+...+.
T Consensus 66 vd~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdq 145 (349)
T cd01998 66 VNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQ 145 (349)
T ss_pred EECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCc
Confidence 6531 10 123445566789999999998863211 1 111111110
Q ss_pred -----CCCC---eeEEecccCCchHHHHHHHhcccc
Q 030189 152 -----GWPP---FMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 152 -----~~~~---~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
..+. ...+.||.+++..||..|.+.+.+
T Consensus 146 sy~L~~~~~~~l~~ii~PL~~~~K~eVr~~A~~~gl 181 (349)
T cd01998 146 SYFLSQLSQEQLSRLIFPLGDLTKPEVREIAKELGL 181 (349)
T ss_pred ceEeccCCHHHHhheeecCCCCCHHHHHHHHHHcCC
Confidence 0111 236899999999999999998765
No 43
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.23 E-value=8.2e-11 Score=88.33 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=67.4
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK-- 114 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k-- 114 (181)
.++|++|||+||+++++++.+... .++.+++++.|...++..++++++++. |+++..+..+..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~--------------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~ 67 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG--------------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEM 67 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC--------------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHH
Confidence 479999999999999999987631 256778999998888888999999999 777655443211
Q ss_pred ------------------------HHHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 115 ------------------------SGLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 115 ------------------------~~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
..+.++..+.|.+++++|+..+|..
T Consensus 68 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~ 116 (154)
T cd01996 68 KDLQLARFKAKVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQEF 116 (154)
T ss_pred HHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence 0233445567888999999999964
No 44
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.23 E-value=4.2e-10 Score=91.37 Aligned_cols=139 Identities=12% Similarity=0.016 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHHHHHHHH
Q 030189 20 NNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEINSFTYDT 98 (181)
Q Consensus 20 ~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~~f~~~~ 98 (181)
+...+.|+..++..+..+++|++|||+||+|+++|+.++.. .+.-+++++.+.. -++-.+.++++
T Consensus 7 ~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~--------------~~~~~~~~~~~~~~~~~e~~~a~~~ 72 (250)
T TIGR00552 7 EEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALG--------------EQNHALLLPHSVQTPEQDVQDALAL 72 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhC--------------CceEEEEECCccCCCHHHHHHHHHH
Confidence 34455677777776668999999999999999999988742 2466677776643 35677889999
Q ss_pred hhhcCceEEEEccc--HH---------------------------HHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCC
Q 030189 99 ASKYVLQLDIIRSD--FK---------------------------SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPS 149 (181)
Q Consensus 99 ~~~~~l~~~~~~~~--~k---------------------------~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~ 149 (181)
++.+|++..++..+ +. ..|..+.++.|..++.||++.+.... .+...
T Consensus 73 a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~G----~~t~~ 148 (250)
T TIGR00552 73 AEPLGINYKNIDIAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELMLG----YFTKY 148 (250)
T ss_pred HHHhCCeEEEEcchHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhhC----Ceecc
Confidence 99999998776531 10 02344455678888999999754321 11111
Q ss_pred CCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 150 SPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 150 ~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
. .....++||.+.+..+|+.|.+.+.+
T Consensus 149 g---d~~~~i~PL~~l~K~eV~~lA~~~g~ 175 (250)
T TIGR00552 149 G---DGGCDIAPIGDLFKTQVYELAKRLNV 175 (250)
T ss_pred c---CCccCccccCCCcHHHHHHHHHHHCc
Confidence 1 12346999999999999999988765
No 45
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.21 E-value=6.8e-10 Score=90.01 Aligned_cols=144 Identities=16% Similarity=0.071 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFT 95 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~ 95 (181)
+...+.....|+..+...+.++++|++|||+||+++++|+.++.. +.++.+++++.+...++..+.+
T Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~-------------~~~v~~~~~~~~~~~~~~~~~a 70 (248)
T cd00553 4 EEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALG-------------RENVLALFMPSRYSSEETREDA 70 (248)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhC-------------cccEEEEECCCCCCCHHHHHHH
Confidence 344555667788878777768999999999999999999998852 1358889999887677888999
Q ss_pred HHHhhhcCceEEEEccc---------HH---------------------HHHHHHHHhCCCcEEEEeeeCCCccccCCcc
Q 030189 96 YDTASKYVLQLDIIRSD---------FK---------------------SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQ 145 (181)
Q Consensus 96 ~~~~~~~~l~~~~~~~~---------~k---------------------~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~ 145 (181)
+++++.+|++..++..+ +. ..|..+.++.+..++-||+ .+|... ..
T Consensus 71 ~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~---G~ 146 (248)
T cd00553 71 KELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLL---GY 146 (248)
T ss_pred HHHHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHh---CC
Confidence 99999999998887642 10 0133444455665565665 333321 11
Q ss_pred cCCCCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 146 FSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 146 ~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
+.... .+...++||.+.+..+|+.+.++..+
T Consensus 147 ~t~~g---d~~~~i~Pl~~l~K~eV~~la~~~~i 177 (248)
T cd00553 147 FTKYG---DGAADINPIGDLYKTQVRELARYLGV 177 (248)
T ss_pred eeccC---CcccCccccCCCcHHHHHHHHHHHCc
Confidence 21111 12346899999999999999887654
No 46
>PRK13980 NAD synthetase; Provisional
Probab=99.19 E-value=8.8e-10 Score=90.24 Aligned_cols=143 Identities=16% Similarity=0.077 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFT 95 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~ 95 (181)
++..+.....|++.+..++..+++|++|||+||+++++|+.++.. +.++.+++++++...++..+.+
T Consensus 11 ~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~-------------~~~v~av~~~~~~~~~~~~~~a 77 (265)
T PRK13980 11 EKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALG-------------KENVLALLMPSSVSPPEDLEDA 77 (265)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhC-------------ccceEEEEeeCCCCCHHHHHHH
Confidence 445556677888888888888999999999999999999988742 1358889999887667788899
Q ss_pred HHHhhhcCceEEEEccc-----HHH--------------------HHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCC
Q 030189 96 YDTASKYVLQLDIIRSD-----FKS--------------------GLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSS 150 (181)
Q Consensus 96 ~~~~~~~~l~~~~~~~~-----~k~--------------------~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~ 150 (181)
+.+++.+|++.+++.-+ +.. .|..+.++.|..++-||.+ +|... ..+....
T Consensus 78 ~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~-sE~~~---G~~t~~g 153 (265)
T PRK13980 78 ELVAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK-SELLL---GYFTKYG 153 (265)
T ss_pred HHHHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH-hHHHh---CCccCCC
Confidence 99999999998777531 100 1334444556555555544 33211 1222111
Q ss_pred CCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 151 PGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 151 ~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
.+..-++||.+++..||+...++..
T Consensus 154 ---D~~~~l~Pl~~l~K~eV~~la~~lg 178 (265)
T PRK13980 154 ---DGAVDLNPIGDLYKTQVRELARHLG 178 (265)
T ss_pred ---CcccCcccCCCCcHHHHHHHHHHHC
Confidence 1123589999999999999877654
No 47
>PLN02347 GMP synthetase
Probab=99.19 E-value=6.2e-10 Score=99.13 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEINS 93 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~~ 93 (181)
++..+.+.++.+++.+... ++++||+|||+||+|+++|+.++.. .++.+||+|+|.. ..|..+
T Consensus 211 ~~~~~~~~i~~i~~~~~~~--~~vvvalSGGVDSsvla~l~~~alG--------------~~v~av~id~g~~~~~E~~~ 274 (536)
T PLN02347 211 MQDVLEEQIELIKATVGPD--EHVICALSGGVDSTVAATLVHKAIG--------------DRLHCVFVDNGLLRYKEQER 274 (536)
T ss_pred cchHHHHHHHHHHHHhccC--CeEEEEecCChhHHHHHHHHHHHhC--------------CcEEEEEEeCCCCChhHHHH
Confidence 4555556666666655433 6899999999999999999999752 4689999999964 568777
Q ss_pred HHHHHhhhcCceEEEEcccH--------------H---------HHHHHHH----HhCCC--cEEEEeeeCCCcc----c
Q 030189 94 FTYDTASKYVLQLDIIRSDF--------------K---------SGLEALL----NAKPI--RAIFLGVRIGDPT----A 140 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~~~--------------k---------~~l~~~~----~~~~~--~~~i~G~R~~es~----~ 140 (181)
-++.+++.+|++++++..+- | +-+.+.. .+.+. +.++.|+-.+|-. +
T Consensus 275 ~~~~~a~~lgi~~~vvd~~e~fl~~l~~~~~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r 354 (536)
T PLN02347 275 VMETFKRDLHLPVTCVDASERFLSKLKGVTDPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPP 354 (536)
T ss_pred HHHHHHHHcCCcEEEEeCcHHHHhhCCCCCChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCC
Confidence 77889999999988875420 0 1122222 22333 7788999888721 1
Q ss_pred cCC----cccCCCCCCC---C---CeeEEecccCCchHHHHHHHhcccc
Q 030189 141 VGQ----EQFSPSSPGW---P---PFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 141 ~~~----~~~~~~~~~~---~---~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
-+. +..-.+-++. + ..-.+.||.+++.+||.+..++.++
T Consensus 355 ~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl 403 (536)
T PLN02347 355 PGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGV 403 (536)
T ss_pred CCCccccccceeeecccccChHHHHCccccchhhCcHHHHHHHHHHcCC
Confidence 121 1111111111 1 1346899999999999999887654
No 48
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.17 E-value=3.9e-10 Score=88.55 Aligned_cols=125 Identities=15% Similarity=0.095 Sum_probs=88.3
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccH----
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDF---- 113 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~---- 113 (181)
++|++|||+||+++++++.+.. .++.+++++.|..-.+-.++++++++.+|++++++..+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g---------------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~ 65 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEG---------------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQL 65 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcC---------------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccc
Confidence 3789999999999999987652 368889999886545556789999999999876654220
Q ss_pred ----------------------H------------HHHHHHHHhCCCcEEEEeeeCCCc-c----ccC----CcccCCCC
Q 030189 114 ----------------------K------------SGLEALLNAKPIRAIFLGVRIGDP-T----AVG----QEQFSPSS 150 (181)
Q Consensus 114 ----------------------k------------~~l~~~~~~~~~~~~i~G~R~~es-~----~~~----~~~~~~~~ 150 (181)
+ .-+..+.++.|...+++|+..+|- . +.. +..+....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~ 145 (201)
T TIGR00364 66 GGSALTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLG 145 (201)
T ss_pred ccccccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhh
Confidence 0 113455666889999999999883 1 111 11111100
Q ss_pred CCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 151 PGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 151 ~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
...++..++|+++|+..||-++.++++
T Consensus 146 -~~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 146 -MLTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred -cCCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 112466799999999999999998876
No 49
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.15 E-value=1e-09 Score=93.45 Aligned_cols=128 Identities=14% Similarity=0.047 Sum_probs=87.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--chHHHHHHHHHhhhcCceEEEEccc-
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--FPEINSFTYDTASKYVLQLDIIRSD- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--fpe~~~f~~~~~~~~~l~~~~~~~~- 112 (181)
++++|++|||+||+|+++|+.+.. .++..+|++.+.. -++-.+.++++++.+|++++++..+
T Consensus 6 ~kVlValSGGVDSsvaa~LL~~~G---------------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~ 70 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLLEAG---------------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARK 70 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHcC---------------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHH
Confidence 689999999999999999998752 3688899986532 2455778899999999998876541
Q ss_pred -H----------------------------H-HHHHHHHHhCCCcEEEEeeeCCCccccCCccc-CCCCCC---------
Q 030189 113 -F----------------------------K-SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQF-SPSSPG--------- 152 (181)
Q Consensus 113 -~----------------------------k-~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~-~~~~~~--------- 152 (181)
+ + ..+.++.++.|.+.++||+........+...+ ...|..
T Consensus 71 ~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~ 150 (360)
T PRK14665 71 VFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWG 150 (360)
T ss_pred HHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceEEecC
Confidence 1 1 13455566788999999998643211111111 111110
Q ss_pred CCC-e--eEEecccCCchHHHHHHHhccc
Q 030189 153 WPP-F--MRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 153 ~~~-~--~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
.++ . ..+.||.+++..||.++..+..
T Consensus 151 l~~~~l~~~ifPLg~~~K~eVr~~A~~~g 179 (360)
T PRK14665 151 LRQEILQRMLLPMGGMTKSEARAYAAERG 179 (360)
T ss_pred CCHHHHhheeccCcCCCHHHHHHHHHHCC
Confidence 011 1 2489999999999999998775
No 50
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.13 E-value=3.7e-10 Score=96.74 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=87.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcC-------ceEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYV-------LQLDI 108 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~-------l~~~~ 108 (181)
+++++++|||+||.|+++|+.+.. .++..+|+++| ++..+-++++++.++ +++.+
T Consensus 181 gkvlvllSGGiDSpVAa~ll~krG---------------~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~ 242 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMMKRG---------------VEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIV 242 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHHHcC---------------CeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEE
Confidence 689999999999999999998863 46888999987 445566666666555 55666
Q ss_pred EcccH-------------------------HHHHHHHHHhCCCcEEEEeeeCCCcccc---CCcccCCCCCCCCCeeEEe
Q 030189 109 IRSDF-------------------------KSGLEALLNAKPIRAIFLGVRIGDPTAV---GQEQFSPSSPGWPPFMRVN 160 (181)
Q Consensus 109 ~~~~~-------------------------k~~l~~~~~~~~~~~~i~G~R~~es~~~---~~~~~~~~~~~~~~~~~i~ 160 (181)
+...+ ...+.++.++.+.++++||+..+|-... ++...... .+...++
T Consensus 243 v~~~~~~~v~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~~----~~lpilR 318 (381)
T PRK08384 243 VKPQERERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQA----SDLPIYR 318 (381)
T ss_pred EChHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhcc----CCCcEEe
Confidence 65421 1235556667889999999999983222 33332221 2455899
Q ss_pred cccCCchHHHHHHHhccc
Q 030189 161 PILDWSYRLLINNKLFGF 178 (181)
Q Consensus 161 Pi~~Wt~~dVw~yi~~~~ 178 (181)
||..+..+||-+|.++..
T Consensus 319 PLi~~dK~EIi~~Ar~iG 336 (381)
T PRK08384 319 PLIGMDKEEIVAIAKTIG 336 (381)
T ss_pred eCCCCCHHHHHHHHHHcC
Confidence 999999999999988743
No 51
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.12 E-value=7.4e-10 Score=94.99 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=87.7
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce-EEEEccc--HH
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ-LDIIRSD--FK 114 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~-~~~~~~~--~k 114 (181)
|+|+||||.||+|+++++.+... .++.++++|.|..- +..+.+++.++.+|+. .+++... |.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~--------------~eV~av~~d~Gq~~-~~~e~a~~~a~~lG~~~~~viD~~~ef~ 65 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGG--------------YEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLREEFV 65 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCC--------------CeEEEEEEECCCcc-hhHHHHHHHHHHcCCCEEEEeccHHHHH
Confidence 58999999999999999987631 36899999999743 3348899999999985 6665321 11
Q ss_pred -------------------------H-----HHHHHHHhCCCcEEEEeeeCC--Ccc--ccCCcccCCCCCCCCCeeEEe
Q 030189 115 -------------------------S-----GLEALLNAKPIRAIFLGVRIG--DPT--AVGQEQFSPSSPGWPPFMRVN 160 (181)
Q Consensus 115 -------------------------~-----~l~~~~~~~~~~~~i~G~R~~--es~--~~~~~~~~~~~~~~~~~~~i~ 160 (181)
+ .+.++.++.|.++++.|.... |.. +.....+. |+.-.+.
T Consensus 66 ~~~i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~------pel~Via 139 (385)
T cd01999 66 EDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALN------PDLKIIA 139 (385)
T ss_pred HHhhHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhC------CCCEEEc
Confidence 1 134445567899999999763 211 11111111 3566899
Q ss_pred cccCC---chHHHHHHHhccccC
Q 030189 161 PILDW---SYRLLINNKLFGFIG 180 (181)
Q Consensus 161 Pi~~W---t~~dVw~yi~~~~~~ 180 (181)
|+.+| +.+||..|.+.|++-
T Consensus 140 Plre~~~~sr~ev~~~A~~~Gip 162 (385)
T cd01999 140 PWRDWEFLSREEEIEYAEEHGIP 162 (385)
T ss_pred chhhhhcCCHHHHHHHHHHcCCC
Confidence 99999 999999999999874
No 52
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.10 E-value=5.9e-10 Score=95.39 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=86.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-hHHHHHHHHHhhhc---C--ceEEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-PEINSFTYDTASKY---V--LQLDII 109 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-pe~~~f~~~~~~~~---~--l~~~~~ 109 (181)
+++++++|||+||+|+++++.+.. .++.++|+|+|... ++..++++.+++.+ + +.+..+
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~krG---------------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v 237 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMMKRG---------------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVF 237 (371)
T ss_pred CeEEEEecCCchHHHHHHHHHHcC---------------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 689999999999999999997752 36888999988544 46677788888876 3 355444
Q ss_pred ccc------------------HHH----HHHHHHHhCCCcEEEEeeeCCCcc-c--cCCcccCCCCCCCCCeeEEecccC
Q 030189 110 RSD------------------FKS----GLEALLNAKPIRAIFLGVRIGDPT-A--VGQEQFSPSSPGWPPFMRVNPILD 164 (181)
Q Consensus 110 ~~~------------------~k~----~l~~~~~~~~~~~~i~G~R~~es~-~--~~~~~~~~~~~~~~~~~~i~Pi~~ 164 (181)
.-. .++ ...++.++.|.+.+++|+..+|-. + .++...... .+...++||+.
T Consensus 238 ~~~~~~~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~----~~~~I~rPLi~ 313 (371)
T TIGR00342 238 DFTDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAV----SNTPILRPLIG 313 (371)
T ss_pred eCHHHHHHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhcc----CCCCEEeCCCC
Confidence 310 111 234556678899999999999932 1 222222111 13446889999
Q ss_pred CchHHHHHHHhccc
Q 030189 165 WSYRLLINNKLFGF 178 (181)
Q Consensus 165 Wt~~dVw~yi~~~~ 178 (181)
|+..||.++.++.+
T Consensus 314 ~~K~EIi~~a~~iG 327 (371)
T TIGR00342 314 MDKEEIIELAKEIG 327 (371)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999988753
No 53
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.09 E-value=6.7e-10 Score=78.17 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=58.2
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--chHHHHHHHHHhhhcCceEEEEcccHHH
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--FPEINSFTYDTASKYVLQLDIIRSDFKS 115 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--fpe~~~f~~~~~~~~~l~~~~~~~~~k~ 115 (181)
++|++|||+||+++++++.+.. .++.++|+|+|.. .++..+++++ ...+
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~--------------~r~~ 51 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG---------------YQVIAVTVDHGISPRLEDAKEIAKE--------------AREE 51 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC---------------CCEEEEEEcCCCcccHHHHHHHHHH--------------HHHH
Confidence 5799999999999999998863 2589999999875 4555555555 3456
Q ss_pred HHHHHHHhCCCcEEEEeeeCCCc
Q 030189 116 GLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 116 ~l~~~~~~~~~~~~i~G~R~~es 138 (181)
.+.++.++.+.+.+++|+..+|.
T Consensus 52 ~~~~~a~~~g~~~i~~g~~~~D~ 74 (103)
T cd01986 52 AAKRIAKEKGAETIATGTRRDDV 74 (103)
T ss_pred HHHHHHHHcCCCEEEEcCCcchH
Confidence 78888888899999999999994
No 54
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.08 E-value=1.3e-09 Score=93.69 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=90.3
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEcc--c
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRS--D 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~--~ 112 (181)
++++|+||||.||+|+++++.+.+. .++.++++|+|.. +-.+.+++.++.+|+ ..+++.. .
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG--------------~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~~~e 66 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYG--------------CEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDLREE 66 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhC--------------CeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcCHHH
Confidence 6899999999999999999987531 3689999999975 345567788999997 4555432 2
Q ss_pred HH------------------------------HHHHHHHHhCCCcEEEEeeeC--CCcc--ccCCcccCCCCCCCCCeeE
Q 030189 113 FK------------------------------SGLEALLNAKPIRAIFLGVRI--GDPT--AVGQEQFSPSSPGWPPFMR 158 (181)
Q Consensus 113 ~k------------------------------~~l~~~~~~~~~~~~i~G~R~--~es~--~~~~~~~~~~~~~~~~~~~ 158 (181)
|. +.|.++.++.|.++++.|... +|.. +.++..+.+ +.-.
T Consensus 67 f~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~~g~~al~p------el~V 140 (399)
T PRK00509 67 FVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAP------DLKV 140 (399)
T ss_pred HHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHHHHHHHHhCC------CCee
Confidence 21 124555667889999999976 5532 233333332 3457
Q ss_pred EecccCC---chHHHHHHHhccccC
Q 030189 159 VNPILDW---SYRLLINNKLFGFIG 180 (181)
Q Consensus 159 i~Pi~~W---t~~dVw~yi~~~~~~ 180 (181)
+.|+.+| |.+|+-+|.++|++-
T Consensus 141 isPlre~~~~tK~eir~~A~~~Gip 165 (399)
T PRK00509 141 IAPWREWDLKSREELIAYAEEHGIP 165 (399)
T ss_pred ecchhhcCCCCHHHHHHHHHHcCCC
Confidence 9999999 999999999999874
No 55
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.07 E-value=1.9e-09 Score=92.58 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=88.2
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCC-CceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc--
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTF-PIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD-- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~-~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~-- 112 (181)
++++|+||||+||+|++++++..+. . ++.++++|+|.. ++-.+.+++.++.+|++++++...
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~g--------------~~~Viav~vd~g~~-~~e~~~a~~~a~~lGi~~~vvd~~ee 67 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKYG--------------YDEVITVTVDVGQP-EEEIKEAEEKAKKLGDKHYTIDAKEE 67 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhcC--------------CCEEEEEEEECCCC-hHHHHHHHHHHHHcCCCEEEEeCHHH
Confidence 6899999999999999999876531 3 688999999853 345566888999999998776542
Q ss_pred HHH-----------------------------HHHHHHHhCCCcEEEEee--eCCCcc--ccCCcccCCCCCCCCCeeEE
Q 030189 113 FKS-----------------------------GLEALLNAKPIRAIFLGV--RIGDPT--AVGQEQFSPSSPGWPPFMRV 159 (181)
Q Consensus 113 ~k~-----------------------------~l~~~~~~~~~~~~i~G~--R~~es~--~~~~~~~~~~~~~~~~~~~i 159 (181)
|.+ .+.++.++.|.+++++|+ +.+|.. +..+... ++-.+
T Consensus 68 f~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~--------~l~vi 139 (394)
T PRK13820 68 FAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRAS--------DLEVI 139 (394)
T ss_pred HHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhh--------cCeee
Confidence 321 244555667899999999 444533 1111111 23356
Q ss_pred ecccC--CchHHHHHHHhccccC
Q 030189 160 NPILD--WSYRLLINNKLFGFIG 180 (181)
Q Consensus 160 ~Pi~~--Wt~~dVw~yi~~~~~~ 180 (181)
.|+.+ ++.+||-+|.++|++-
T Consensus 140 aP~re~~ltK~ei~~ya~~~gip 162 (394)
T PRK13820 140 APIRELNLTREWEIEYAKEKGIP 162 (394)
T ss_pred CchhccCCCHHHHHHHHHHcCCC
Confidence 79888 5999999999999874
No 56
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.07 E-value=3e-09 Score=90.15 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=69.8
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK-- 114 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k-- 114 (181)
.++|++||||||++++|++..... .++-++++++|..-+.-.+.++.+++.+|++++++.++.+
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~g--------------l~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~ 126 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLG--------------LNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETF 126 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhC--------------CceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHH
Confidence 499999999999999999966532 3466789999987666778999999999999988877522
Q ss_pred -----------------------HHHHHHHHhCCCcEEEEeeeCCC
Q 030189 115 -----------------------SGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 115 -----------------------~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
..+.+++.+.+..++++|...+|
T Consensus 127 ~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE 172 (343)
T TIGR03573 127 RKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIAE 172 (343)
T ss_pred HHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHH
Confidence 12455666778999999999996
No 57
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.05 E-value=2.4e-09 Score=92.07 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=88.0
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEcc--cH
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRS--DF 113 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~--~~ 113 (181)
+++|+||||+||+++++++.... .++.++++|+|.. .+-.+.+++.++.+|+ ++.++.. .|
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g---------------~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~ef 64 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKG---------------YEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDAREEF 64 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC---------------CEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHHHH
Confidence 47999999999999999987652 4689999999964 5566778889999997 6666543 12
Q ss_pred H------------------------------HHHHHHHHhCCCcEEEEeeeCC--CccccCCcccCCCCCCCCCeeEEec
Q 030189 114 K------------------------------SGLEALLNAKPIRAIFLGVRIG--DPTAVGQEQFSPSSPGWPPFMRVNP 161 (181)
Q Consensus 114 k------------------------------~~l~~~~~~~~~~~~i~G~R~~--es~~~~~~~~~~~~~~~~~~~~i~P 161 (181)
. +.+.++.++.|.++++.|.... |..+ -........ |+.-.+.|
T Consensus 65 ~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvr-f~r~~~~~~---~~l~viaP 140 (394)
T TIGR00032 65 VKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQER-FERSIRLLN---PDLKVIAP 140 (394)
T ss_pred HHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHH-HHHHHHHhC---CCCeEECc
Confidence 1 1245666678899999999554 3222 111111111 34568999
Q ss_pred c--cCCchHHHHHHHhccccC
Q 030189 162 I--LDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 162 i--~~Wt~~dVw~yi~~~~~~ 180 (181)
+ ..++.+|+-.|+..|++-
T Consensus 141 Lrew~l~r~ei~~ya~~~Gip 161 (394)
T TIGR00032 141 WRDLNFTREEEIEYAIQCGIP 161 (394)
T ss_pred hhhcCCCHHHHHHHHHHcCCC
Confidence 9 557999999999999864
No 58
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.05 E-value=9.9e-10 Score=86.08 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=81.7
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCch------HHHHHHHHHhhhcCceEEEEc
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFP------EINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fp------e~~~f~~~~~~~~~l~~~~~~ 110 (181)
+++++|||||||+++++++.+.. .++.++++.++.... .-.+.++..++.+|+++.++.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G---------------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~ 65 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG---------------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIE 65 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC---------------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEe
Confidence 47899999999999999998852 356667766554321 134678888999999987765
Q ss_pred c-----cH----HHHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHh
Q 030189 111 S-----DF----KSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKL 175 (181)
Q Consensus 111 ~-----~~----k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~ 175 (181)
- ++ .+.|.++.++ +.++++.|...+|-.+......... -+..-+.||..-..+++..=+.
T Consensus 66 ~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~----~gl~~~~PLW~~~~~~ll~e~~ 134 (194)
T cd01994 66 ISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCER----LGLEPLAPLWGRDQEELLREMI 134 (194)
T ss_pred CCCCchHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHH----cCCEEEecccCCCHHHHHHHHH
Confidence 2 23 3345555544 7899999999999654433322211 1456789998888887765443
No 59
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.02 E-value=2.8e-09 Score=91.84 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=88.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceE-EEEcc--c
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQL-DIIRS--D 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~-~~~~~--~ 112 (181)
++++|+||||+||+|+++++.+.+. .++.++++|.|.. .+-.+.+++.++.+|++. +++.. .
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G--------------~eViav~id~Gq~-~~el~~a~~~A~~lGi~~~~v~dl~~e 70 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYG--------------CEVVCFTADVGQG-IEELEGLEAKAKASGAKQLVVKDLREE 70 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhC--------------CeEEEEEEECCCC-hHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 5899999999999999999977521 3688999999973 345667888899999963 44431 1
Q ss_pred HH------------------------------HHHHHHHHhCCCcEEEEeeeC--CCcc--ccCCcccCCCCCCCCCeeE
Q 030189 113 FK------------------------------SGLEALLNAKPIRAIFLGVRI--GDPT--AVGQEQFSPSSPGWPPFMR 158 (181)
Q Consensus 113 ~k------------------------------~~l~~~~~~~~~~~~i~G~R~--~es~--~~~~~~~~~~~~~~~~~~~ 158 (181)
|. +.+-++.++.|.++++.|... +|.. +.++..+.+ +.-.
T Consensus 71 f~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~~~~al~p------el~V 144 (404)
T PLN00200 71 FVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALNP------ELKV 144 (404)
T ss_pred HHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHHHHHHhCC------CCee
Confidence 11 124455667889999999975 4432 222333332 3457
Q ss_pred EecccCCc---hHHHHHHHhcccc
Q 030189 159 VNPILDWS---YRLLINNKLFGFI 179 (181)
Q Consensus 159 i~Pi~~Wt---~~dVw~yi~~~~~ 179 (181)
+.|+.+|. .+|+.+|.++|++
T Consensus 145 iaPlre~~~~~r~e~~~~A~~~Gi 168 (404)
T PLN00200 145 VAPWREWDIKGREDLIEYAKKHNI 168 (404)
T ss_pred eCchhhcCCCCHHHHHHHHHHcCC
Confidence 89999996 9999999999987
No 60
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.98 E-value=7.1e-09 Score=88.33 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=86.6
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc--H
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD--F 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--~ 113 (181)
++++|++|||+||+|+++++++.. .++.+++++... .+ .+.++++++.+|+++.++... +
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~~~G---------------~eV~av~~~~~~--~e-~~~a~~va~~LGI~~~vvd~~~~f 67 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQEQG---------------YEIVGVTMRVWG--DE-PQDARELAARMGIEHYVADERVPF 67 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHcC---------------CcEEEEEecCcc--hh-HHHHHHHHHHhCCCEEEEeChHHH
Confidence 689999999999999999887642 368888988642 22 345888999999998776532 1
Q ss_pred ----------------------------H-HHHHHHHHhCCCcEEEEeeeCCCccccCC-cccCCCCC---------CCC
Q 030189 114 ----------------------------K-SGLEALLNAKPIRAIFLGVRIGDPTAVGQ-EQFSPSSP---------GWP 154 (181)
Q Consensus 114 ----------------------------k-~~l~~~~~~~~~~~~i~G~R~~es~~~~~-~~~~~~~~---------~~~ 154 (181)
| ..|.++.++.|.+.++||+........+. ..+...|. ..+
T Consensus 68 ~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~ 147 (362)
T PRK14664 68 KDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLG 147 (362)
T ss_pred HHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcC
Confidence 1 12556666788899999998854221111 11111111 011
Q ss_pred -Ce--eEEecccCCchHHHHHHHhcccc
Q 030189 155 -PF--MRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 155 -~~--~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
+. ..+.||-+++.+||..|..++.+
T Consensus 148 ~~~l~~~ifPLg~~~K~evr~~A~~~gl 175 (362)
T PRK14664 148 QDILRRCIFPLGNYTKQTVREYLREKGY 175 (362)
T ss_pred HHHHhHHhccCccCCHHHHHHHHHHcCC
Confidence 11 25899999999999999998876
No 61
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.94 E-value=2.9e-08 Score=79.78 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=87.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce-EEEEccc--
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ-LDIIRSD-- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~-~~~~~~~-- 112 (181)
++++|+||||.||++++.++.+.. .++.++++|.|+....-.+..+.+++.+|++ ..++.-+
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~~---------------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l 66 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQY---------------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLL 66 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhcC---------------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 478999999999999999886542 2588999999987666667788889999995 5443211
Q ss_pred -----------------H--------------HH----HHHH-HHHhCCCcEEEEeeeCCC-c-cccC----CcccC---
Q 030189 113 -----------------F--------------KS----GLEA-LLNAKPIRAIFLGVRIGD-P-TAVG----QEQFS--- 147 (181)
Q Consensus 113 -----------------~--------------k~----~l~~-~~~~~~~~~~i~G~R~~e-s-~~~~----~~~~~--- 147 (181)
. |. .+.. +....|.+.+++|...+| + ++-. ++.++
T Consensus 67 ~~l~~s~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~ 146 (231)
T PRK11106 67 NELAVSSLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAV 146 (231)
T ss_pred ccccccccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHH
Confidence 0 11 1333 455678999999999988 3 2222 22211
Q ss_pred -CCCCCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 148 -PSSPGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 148 -~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
.... .++....|+.+|+..||+..-+...
T Consensus 147 ~~~~~--~~i~I~aPl~~lsK~eI~~l~~~lg 176 (231)
T PRK11106 147 SLGMA--KDIRFETPLMWLNKAETWALADYYG 176 (231)
T ss_pred HhccC--CCcEEEecCCCCCHHHHHHHHHHcC
Confidence 1011 1355689999999999999866544
No 62
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.93 E-value=9e-09 Score=88.78 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=84.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC-CCchHHHHHHHHHhhhcC-----ceEEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN-SAFPEINSFTYDTASKYV-----LQLDII 109 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg-~~fpe~~~f~~~~~~~~~-----l~~~~~ 109 (181)
+++++++|||.||+|+++++.+.. .++.++|+++. ..-++..+.+.++++.++ +++.++
T Consensus 177 gkvvvllSGGiDS~vaa~l~~k~G---------------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv 241 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAMKRG---------------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVV 241 (394)
T ss_pred CCEEEEECCChhHHHHHHHHHHCC---------------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 589999999999999999997652 35778888763 333444455666666553 777666
Q ss_pred ccc------------------HHH----HHHHHHHhCCCcEEEEeeeCCCcc---ccCCcccCCCCCCCCCeeEEecccC
Q 030189 110 RSD------------------FKS----GLEALLNAKPIRAIFLGVRIGDPT---AVGQEQFSPSSPGWPPFMRVNPILD 164 (181)
Q Consensus 110 ~~~------------------~k~----~l~~~~~~~~~~~~i~G~R~~es~---~~~~~~~~~~~~~~~~~~~i~Pi~~ 164 (181)
.-+ .++ .+..+.++.|..+++||...+|-. ..++..+... .+...++||..
T Consensus 242 ~~~~~~~~i~~~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i~~~----~~~~V~rPLig 317 (394)
T PRK01565 242 PFTEIQEEIKKKVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAINAV----TNLPVLRPLIG 317 (394)
T ss_pred ECHHHHHHHhhcCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHHhhc----cCcEEEECCCC
Confidence 532 111 234455667899999999998832 2334333211 13457899999
Q ss_pred CchHHHHHHHhccc
Q 030189 165 WSYRLLINNKLFGF 178 (181)
Q Consensus 165 Wt~~dVw~yi~~~~ 178 (181)
++..||.++-++..
T Consensus 318 ~~K~EI~~lAr~iG 331 (394)
T PRK01565 318 MDKEEIIEIAKEIG 331 (394)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999887643
No 63
>PTZ00323 NAD+ synthase; Provisional
Probab=98.90 E-value=1.2e-07 Score=78.79 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=102.8
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC-
Q 030189 8 RESDDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS- 86 (181)
Q Consensus 8 ~~~~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~- 86 (181)
+..+.=..++.++.....|+..++..+...++|++|||.||+|++.|+.++..... .....++.+..+.
T Consensus 19 ~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~----------~~~~~~~~v~~P~~ 88 (294)
T PTZ00323 19 RRKRAFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPN----------SPIQKNVGLCQPIH 88 (294)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhcccc----------CCceEEEEEECCCC
Confidence 33333445666777778888888887668999999999999999999999863100 0113455555553
Q ss_pred CchHHHHHHHHHhhhcCceEEEEccc-HH----H------------------------H----HHHHHHhCCCcEEEEee
Q 030189 87 AFPEINSFTYDTASKYVLQLDIIRSD-FK----S------------------------G----LEALLNAKPIRAIFLGV 133 (181)
Q Consensus 87 ~fpe~~~f~~~~~~~~~l~~~~~~~~-~k----~------------------------~----l~~~~~~~~~~~~i~G~ 133 (181)
.-+++.+-..++++.+|++.+++.-+ +. . + +.+...+.+...+++|.
T Consensus 89 ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT 168 (294)
T PTZ00323 89 SSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGT 168 (294)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECC
Confidence 24678888999999999998777542 11 0 1 11112234566899999
Q ss_pred -eCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHhcc
Q 030189 134 -RIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 134 -R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
.++|-..-+...... .+..-+.||.+++..||+...++-
T Consensus 169 ~N~sE~~~~Gy~t~~G-----Dg~~d~~pia~L~K~eVr~LAr~l 208 (294)
T PTZ00323 169 GNFDEDGYLGYFCKAG-----DGVVDVQLISDLHKSEVFLVAREL 208 (294)
T ss_pred CCchhhhHhchHhhcC-----CCCcCchhhcCCcHHHHHHHHHHc
Confidence 888842112222211 134458999999999999887754
No 64
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.84 E-value=3.1e-08 Score=85.12 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=88.3
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEccc--
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRSD-- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~~-- 112 (181)
++++|+||||-||+|+++++.... .++.++++|.|....+-.+-+++.++.+|+ +..++...
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G---------------~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~ee 67 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERG---------------YAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPA 67 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcC---------------CcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHH
Confidence 589999999999999999987642 368999999997655556678888999998 46665431
Q ss_pred HH-----------------------------HHHHHHHHhCCCcEEEEeee--CCCcc--ccCCcccCCCCCCCCCeeEE
Q 030189 113 FK-----------------------------SGLEALLNAKPIRAIFLGVR--IGDPT--AVGQEQFSPSSPGWPPFMRV 159 (181)
Q Consensus 113 ~k-----------------------------~~l~~~~~~~~~~~~i~G~R--~~es~--~~~~~~~~~~~~~~~~~~~i 159 (181)
|. ..|.++.++.|.+++++|.. .+|.. +.++..+. +.-.+
T Consensus 68 f~e~vi~p~i~aNa~y~G~yPl~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~-------el~Vi 140 (400)
T PRK04527 68 IWEGFVKPLVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG-------DYQIV 140 (400)
T ss_pred HHHHHHHHHHhcchhhcCCCCCccccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHHHHhh-------cCCcc
Confidence 11 12445556678999999996 45532 22333332 23368
Q ss_pred ecccCC------chHHHHHHHhcccc
Q 030189 160 NPILDW------SYRLLINNKLFGFI 179 (181)
Q Consensus 160 ~Pi~~W------t~~dVw~yi~~~~~ 179 (181)
.|+.+| +.+|.-+|+.+|+|
T Consensus 141 aPlre~~~~k~~~R~~~i~ya~~~gi 166 (400)
T PRK04527 141 APIREIQKEHTQTRAYEQKYLEERGF 166 (400)
T ss_pred chHHHhcCcccccHHHHHHHHHHcCC
Confidence 999999 46777999999987
No 65
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.82 E-value=2.4e-08 Score=88.22 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=84.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-hH-HHHHHHHHhhhcC----ceEEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-PE-INSFTYDTASKYV----LQLDII 109 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-pe-~~~f~~~~~~~~~----l~~~~~ 109 (181)
+++++.+|||+||+|+++++.+.. .++.++|+|.|... .+ ..+..+.++++|+ ++++++
T Consensus 178 gk~lvllSGGiDS~va~~~~~krG---------------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v 242 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRRG---------------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISV 242 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHcC---------------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEE
Confidence 689999999999999999997753 46889999988643 22 4555666666665 445555
Q ss_pred ccc------------------HHHH-H---HHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCch
Q 030189 110 RSD------------------FKSG-L---EALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSY 167 (181)
Q Consensus 110 ~~~------------------~k~~-l---~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~ 167 (181)
.-. +++- | +++.++.|.++++||...+|-....+..+...+.. .+....+|+..++.
T Consensus 243 ~~~~~~~~i~~~~~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~~-~~~~v~rPLi~~dK 321 (482)
T PRK01269 243 DFEPVVGEILEKVDDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDNV-TDTLILRPLIAMDK 321 (482)
T ss_pred ecHHHHHHHHhcCCCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhhh-cCCceecCCcCCCH
Confidence 420 1111 2 44455678999999999999322222222111111 23445799999999
Q ss_pred HHHHHHHhccc
Q 030189 168 RLLINNKLFGF 178 (181)
Q Consensus 168 ~dVw~yi~~~~ 178 (181)
.||..|-+..+
T Consensus 322 ~EIi~~a~~ig 332 (482)
T PRK01269 322 EDIIDLAREIG 332 (482)
T ss_pred HHHHHHHHHhC
Confidence 99999987654
No 66
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.82 E-value=8.7e-08 Score=77.58 Aligned_cols=138 Identities=17% Similarity=0.113 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHh
Q 030189 20 NNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTA 99 (181)
Q Consensus 20 ~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~ 99 (181)
+.....|+..++..+...++|++|||.||+|++.|+.++... .++-+|+++++...++..+-.++++
T Consensus 3 ~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~-------------~~v~~v~mp~~~~~~~~~~~A~~la 69 (242)
T PF02540_consen 3 EALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGP-------------DNVLAVIMPSGFSSEEDIEDAKELA 69 (242)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGG-------------GEEEEEEEESSTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhh-------------ccccccccccccCChHHHHHHHHHH
Confidence 445567777777777789999999999999999999999731 3578899998888888899999999
Q ss_pred hhcCceEEEEccc--H---HH---------------------HHHHHHHhCCCcEEEEee-eCCCccccCCcccCCCCCC
Q 030189 100 SKYVLQLDIIRSD--F---KS---------------------GLEALLNAKPIRAIFLGV-RIGDPTAVGQEQFSPSSPG 152 (181)
Q Consensus 100 ~~~~l~~~~~~~~--~---k~---------------------~l~~~~~~~~~~~~i~G~-R~~es~~~~~~~~~~~~~~ 152 (181)
+.+|++..++.-+ + .+ .+-.+... ...+++|. .++|.. +..+..-.
T Consensus 70 ~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~--~~~lVlgT~N~sE~~---~Gy~T~~G-- 142 (242)
T PF02540_consen 70 EKLGIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANK--YNYLVLGTGNKSELL---LGYFTKYG-- 142 (242)
T ss_dssp HHHTSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTEEEBE--CHHHHH---HTCSHTTT--
T ss_pred HHhCCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcc--cceEEecCCcHHHhh---cCcccccC--
Confidence 9999999887632 1 10 01111112 34566766 223321 11222211
Q ss_pred CCCeeEEecccCCchHHHHHHHhccc
Q 030189 153 WPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 153 ~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
.+..-++||.+-...||+...++-+
T Consensus 143 -D~~~d~~Pi~~L~K~eV~~la~~l~ 167 (242)
T PF02540_consen 143 -DGAGDIAPIADLYKTEVRELARYLG 167 (242)
T ss_dssp -TTSSSBETTTTS-HHHHHHHHHHTT
T ss_pred -cccccceeeCCcCHHHHHHHHHHHh
Confidence 1223489999999999999877654
No 67
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.82 E-value=6.1e-08 Score=76.85 Aligned_cols=124 Identities=16% Similarity=0.219 Sum_probs=75.3
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEccc-HH
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRSD-FK 114 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~~-~k 114 (181)
+.+|.||||.||+++++++.+.. .++.++++|-|+....-.+..+++++.+|+ +..++.-+ ++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~---------------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~ 65 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEG---------------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLK 65 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH----------------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHcC---------------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHH
Confidence 46899999999999999888764 368899999998876777889999999999 77776643 11
Q ss_pred H----------------------------H--------H-HHHHHhCCCcEEEEeeeCCCcc--ccCC----ccc----C
Q 030189 115 S----------------------------G--------L-EALLNAKPIRAIFLGVRIGDPT--AVGQ----EQF----S 147 (181)
Q Consensus 115 ~----------------------------~--------l-~~~~~~~~~~~~i~G~R~~es~--~~~~----~~~----~ 147 (181)
+ | + ..+....+...+++|...+|.. .-.. ..+ .
T Consensus 66 ~~~~s~L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~ 145 (209)
T PF06508_consen 66 EIGGSALTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLN 145 (209)
T ss_dssp HCSCHHHHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHH
T ss_pred hhCCCcccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHH
Confidence 0 1 1 1233445788999999999832 1111 111 1
Q ss_pred CCCCCCCCeeEEecccCCchHHHHHHHhcc
Q 030189 148 PSSPGWPPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 148 ~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
... ..++....|+.+||..||+..-...
T Consensus 146 ~~~--~~~v~i~~P~~~~tK~eiv~~~~~l 173 (209)
T PF06508_consen 146 LGE--GGPVRIETPLIDLTKAEIVKLGVEL 173 (209)
T ss_dssp HHH--TS--EEE-TTTT--HHHHHHHHHHT
T ss_pred hcC--CCCEEEEecCCCCCHHHHHHHHHHc
Confidence 110 0245668999999999999876543
No 68
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.76 E-value=2.8e-08 Score=79.24 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=77.9
Q ss_pred EEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCce-EEEecCCC----Cch-HHHHHHHHHhhhcCceEEEEccc
Q 030189 39 AFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIR-TIYFESNS----AFP-EINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 39 ~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~-~v~idtg~----~fp-e~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
+++|||||||+++++++.+.. .++. ++++.+.. .++ .-.+.++..++.+|+++.++.-+
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G---------------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEG---------------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcC---------------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECC
Confidence 378999999999999988752 2343 44555331 111 12356788899999998776532
Q ss_pred ---------HHHHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHh
Q 030189 113 ---------FKSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKL 175 (181)
Q Consensus 113 ---------~k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~ 175 (181)
+...+.++.++ +.+.++.|.-.++-.+.....+.. ..++-.+.||..++..+++.=+.
T Consensus 66 ~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~----~~gl~~~~PLw~~~~~el~~~~~ 132 (218)
T TIGR03679 66 GEKEKEVEDLKGALKELKRE-GVEGIVTGAIASRYQKSRIERICE----ELGLKVFAPLWGRDQEEYLRELV 132 (218)
T ss_pred CCChHHHHHHHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHH----hCCCeEEeehhcCCHHHHHHHHH
Confidence 33455555554 899999999998743333322221 12566799999999999886444
No 69
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=98.60 E-value=9.7e-07 Score=71.96 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEINSF 94 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~~f 94 (181)
+.-+..+++.|++.+ |.++++++.|||.||+|+.-|+.+|.. ..+.+||+|+|.. --|..+-
T Consensus 5 ~~~ie~~i~~ir~~v---g~~kvi~alSGGVDSsv~a~L~~~AiG--------------d~l~cvfVD~GLlR~~E~e~V 67 (315)
T COG0519 5 ENFIEEAIEEIREQV---GDGKVILALSGGVDSSVAAVLAHRAIG--------------DQLTCVFVDHGLLRKGEAEQV 67 (315)
T ss_pred HHHHHHHHHHHHHHh---CCceEEEEecCCCcHHHHHHHHHHHhh--------------cceEEEEecCCcccCCcHHHH
Confidence 344556666666655 557999999999999999999999974 4799999999965 3466666
Q ss_pred HHHHhhhcCceEEEEccc--H------------H---------HHHHHHHHhCCCcEEEEeeeCCC---cc-ccCCcccC
Q 030189 95 TYDTASKYVLQLDIIRSD--F------------K---------SGLEALLNAKPIRAIFLGVRIGD---PT-AVGQEQFS 147 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~--~------------k---------~~l~~~~~~~~~~~~i~G~R~~e---s~-~~~~~~~~ 147 (181)
.+-+.+.+|++++.+... | | +-+++..++.+.+.++-|+=..| |. .......+
T Consensus 68 ~~~f~~~~~~nl~~VdA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKS 147 (315)
T COG0519 68 VEMFREHLGLNLIVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKS 147 (315)
T ss_pred HHHHHhhcCCceEEEchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCcccc
Confidence 677777899999998752 1 1 23444455555667777776655 32 11111111
Q ss_pred CCC-CCCCC---eeEEecccCCchHHHHHHH
Q 030189 148 PSS-PGWPP---FMRVNPILDWSYRLLINNK 174 (181)
Q Consensus 148 ~~~-~~~~~---~~~i~Pi~~Wt~~dVw~yi 174 (181)
--+ .+.|. +-.+-||.+.-.++|-.--
T Consensus 148 HHNVGGLP~~m~lkLvEPLr~LfKDEVR~lg 178 (315)
T COG0519 148 HHNVGGLPEDMKLKLVEPLRELFKDEVRELG 178 (315)
T ss_pred ccccCCCccccceeeeHHHHHHhHHHHHHHH
Confidence 111 02232 4457899988888887643
No 70
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.60 E-value=2.1e-06 Score=70.41 Aligned_cols=159 Identities=11% Similarity=0.039 Sum_probs=95.5
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC
Q 030189 8 RESDDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA 87 (181)
Q Consensus 8 ~~~~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~ 87 (181)
+..+.-..+..++...++|+..++..+...++|+.|||.||+|++.|+.++......+ ++ ....+++.+-.+..
T Consensus 11 ~~~~~~~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~----~~--~~~~~~~~l~mP~~ 84 (268)
T PRK00768 11 GVKPTIDPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAE----TG--DDDYQFIAVRLPYG 84 (268)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhccc----cc--CcceeEEEEECCCC
Confidence 3333444566677788889998888777899999999999999999999986421110 00 01244555555544
Q ss_pred chHHHHHHHHHhhhcCc-eEEEEccc-HHHHHHHHHH--------------------------hCCCcEEEEee-eCCCc
Q 030189 88 FPEINSFTYDTASKYVL-QLDIIRSD-FKSGLEALLN--------------------------AKPIRAIFLGV-RIGDP 138 (181)
Q Consensus 88 fpe~~~f~~~~~~~~~l-~~~~~~~~-~k~~l~~~~~--------------------------~~~~~~~i~G~-R~~es 138 (181)
.++..+-.+.+++.+|+ +..++.-+ ..+.+.+.+. .+....+++|. .++|.
T Consensus 85 ~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~sE~ 164 (268)
T PRK00768 85 VQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHAAEA 164 (268)
T ss_pred CcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcccHH
Confidence 56667778888999998 66555421 1111111010 01122344554 23332
Q ss_pred cccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 139 TAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
. +.++..-. .+..-++||.+++..+|+...++.+
T Consensus 165 ~---~Gy~TkyG---D~~~d~~pi~~L~KteV~~La~~l~ 198 (268)
T PRK00768 165 V---TGFFTKFG---DGGADILPLFGLNKRQGRALLAALG 198 (268)
T ss_pred H---hCceeccC---CccccchhhcCCcHHHHHHHHHHhC
Confidence 2 12222211 1234699999999999999887654
No 71
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.58 E-value=5.7e-07 Score=76.51 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=73.5
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC---------chHHHHHHHHHhhhcCceEE
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA---------FPEINSFTYDTASKYVLQLD 107 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~---------fpe~~~f~~~~~~~~~l~~~ 107 (181)
+|+|+.|||.||+|.+.|+.+.. .++.-||+..... .++-.+-++++++.+|++++
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G---------------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~ 66 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG---------------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHY 66 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT----------------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EE
T ss_pred eEEEEccCCHHHHHHHHHHHhhc---------------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEE
Confidence 68999999999999999999874 3577778775543 13456778999999999999
Q ss_pred EEcc--cHHH-----------------------------HHHHHHHh-CCCcEEEEee--eCCCc--ccc-CC-cccCCC
Q 030189 108 IIRS--DFKS-----------------------------GLEALLNA-KPIRAIFLGV--RIGDP--TAV-GQ-EQFSPS 149 (181)
Q Consensus 108 ~~~~--~~k~-----------------------------~l~~~~~~-~~~~~~i~G~--R~~es--~~~-~~-~~~~~~ 149 (181)
++.- .|++ .|.+++.+ .+.+.+.||| |.... ..+ .+ ....+.
T Consensus 67 v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~ 146 (356)
T PF03054_consen 67 VVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPK 146 (356)
T ss_dssp EEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTT
T ss_pred EEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCC
Confidence 8874 2221 25555556 7899999999 22221 111 01 011111
Q ss_pred -CC-----CCCC---eeEEecccCCchHHHHHHHhcccc
Q 030189 150 -SP-----GWPP---FMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 150 -~~-----~~~~---~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
|. ..+. ...+.||=+++..||.....+..+
T Consensus 147 KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl 185 (356)
T PF03054_consen 147 KDQSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGL 185 (356)
T ss_dssp C--GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-
T ss_pred CCceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCC
Confidence 10 0111 135899999999999998887654
No 72
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.55 E-value=7.8e-07 Score=74.88 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 15 LKTKYNNAINVIQRTLAL-YSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~-~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
.+..++...+.|+..++. .+.++++|++|||.||+|++.|+.++.. ..++.++++.++..-++..+
T Consensus 12 ~~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g-------------~~~v~av~~~~~~s~~~e~~ 78 (326)
T PRK00876 12 AAAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALG-------------KERVYGLLMPERDSSPESLR 78 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhC-------------CCcEEEEEecCCCCChHHHH
Confidence 344555666778888877 5556899999999999999999988742 02467788887755567788
Q ss_pred HHHHHhhhcCceEEEEcc
Q 030189 94 FTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~ 111 (181)
+++.+++.+|++.+++..
T Consensus 79 ~A~~lA~~LGi~~~~i~i 96 (326)
T PRK00876 79 LGREVAEHLGVEYVVEDI 96 (326)
T ss_pred HHHHHHHHcCCCEEEEEC
Confidence 999999999999877764
No 73
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.52 E-value=1.2e-06 Score=71.13 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=65.9
Q ss_pred CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH
Q 030189 35 IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK 114 (181)
Q Consensus 35 ~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k 114 (181)
..++.+.+|||.||++++.++.+... .++.++.+..+..-.+-..+++.+++.+|++.+.+..+..
T Consensus 15 ~~~v~~~LSGGlDSs~va~~~~~~~~--------------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~ 80 (269)
T cd01991 15 DVPVGVLLSGGLDSSLVAALAARLLP--------------EPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPA 80 (269)
T ss_pred CCceEEeecccHHHHHHHHHHHHhhC--------------CCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHH
Confidence 36899999999999999999987631 2366677765543223377899999999999877764311
Q ss_pred -------------------------HHHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 115 -------------------------SGLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 115 -------------------------~~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
..+.+...+.+.+++++|.-.||-.
T Consensus 81 ~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 81 DLLAALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccccc
Confidence 0244455556779999999999943
No 74
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=4.7e-07 Score=68.34 Aligned_cols=117 Identities=19% Similarity=0.266 Sum_probs=80.1
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH--
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK-- 114 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k-- 114 (181)
.+.+-|||||||+..+.++.+.. .++..|.++-|.. ...++..+.++.+|++..++.-+-.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg---------------yev~LVTvnFGv~--d~~k~A~~tA~~lgF~h~vl~Ldr~il 64 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG---------------YEVELVTVNFGVL--DSWKYARETAAILGFPHEVLQLDREIL 64 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC---------------CCcEEEEEEeccc--cchhhHHHHHHHhCCCcceeccCHHHH
Confidence 47889999999999999888873 4678888887763 2467788889999999888875410
Q ss_pred ----------------------HHHHHHHHhCCCcEEEEeeeCCCcc----ccCCcccCCCCCCCCCeeEEecccCCchH
Q 030189 115 ----------------------SGLEALLNAKPIRAIFLGVRIGDPT----AVGQEQFSPSSPGWPPFMRVNPILDWSYR 168 (181)
Q Consensus 115 ----------------------~~l~~~~~~~~~~~~i~G~R~~es~----~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~ 168 (181)
.+++.+. ....+.+.-|.|+||-. ++....++-+ -+...++||.-..+.
T Consensus 65 e~A~em~iedg~P~~aIq~iH~~alE~~A-~r~~~~iaDGTRRDDrvP~ls~~~~qSLEdR----~nv~Yi~PL~G~G~k 139 (198)
T COG2117 65 EDAVEMIIEDGYPRNAIQYIHEMALEALA-SREVDRIADGTRRDDRVPKLSRSEAQSLEDR----LNVQYIRPLLGLGYK 139 (198)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHH-HHHHHHHcCCCcccccCccccHHHHhhHHHh----cCceeecccccccHH
Confidence 1222222 22477899999999932 1222233211 245679999988887
Q ss_pred HHHHHHh
Q 030189 169 LLINNKL 175 (181)
Q Consensus 169 dVw~yi~ 175 (181)
-|-....
T Consensus 140 ti~~Lv~ 146 (198)
T COG2117 140 TIRRLVS 146 (198)
T ss_pred HHHHHHH
Confidence 7765443
No 75
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.45 E-value=1.1e-06 Score=68.93 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=65.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC-CCchHHHHHHHHH---hhhcC----ceEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN-SAFPEINSFTYDT---ASKYV----LQLD 107 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg-~~fpe~~~f~~~~---~~~~~----l~~~ 107 (181)
+++++.+|||.||.|.+.++.+.. .++..+|++++ ..-+...+.++++ ...|+ +++.
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG---------------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~ 68 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRG---------------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLY 68 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT----------------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEE
T ss_pred ceEEEEecCCccHHHHHHHHHHCC---------------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEE
Confidence 578899999999999999998763 46888999843 2222222223332 33343 4555
Q ss_pred EEccc------------------HHHHH----HHHHHhCCCcEEEEeeeCCCccc---cCCcccCCCCCCCCCeeEEecc
Q 030189 108 IIRSD------------------FKSGL----EALLNAKPIRAIFLGVRIGDPTA---VGQEQFSPSSPGWPPFMRVNPI 162 (181)
Q Consensus 108 ~~~~~------------------~k~~l----~~~~~~~~~~~~i~G~R~~es~~---~~~~~~~~~~~~~~~~~~i~Pi 162 (181)
++... +++.| .++.++.|.++++||--..|-.. .++...+... +...++||
T Consensus 69 ~v~~~~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~~~----~~pIlRPL 144 (197)
T PF02568_consen 69 VVDFTEVQKEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVIESAS----DLPILRPL 144 (197)
T ss_dssp EECHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHHGGG------S-EE-TT
T ss_pred EECcHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhhhccc----CCceeCCc
Confidence 55421 11222 34556788999999987777321 2333333221 35689999
Q ss_pred cCCchHHHHHHHhc
Q 030189 163 LDWSYRLLINNKLF 176 (181)
Q Consensus 163 ~~Wt~~dVw~yi~~ 176 (181)
.-+..+||-+..++
T Consensus 145 ig~dK~EIi~~Ar~ 158 (197)
T PF02568_consen 145 IGFDKEEIIEIARK 158 (197)
T ss_dssp TT--HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999887765
No 76
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.32 E-value=1e-05 Score=64.40 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=87.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKS 115 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~ 115 (181)
.+.+|-||||-||+++++.+.+-+ .++.++++|=|+-..--.+..+++++.+|++.+++.-++-.
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~---------------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~ 67 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEG---------------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLG 67 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcC---------------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHh
Confidence 467899999999999999998764 46899999999877777788999999999998887643210
Q ss_pred -----------------------------H--------H-HHHHHhCCCcEEEEeeeCCCccc----c-----CCc-ccC
Q 030189 116 -----------------------------G--------L-EALLNAKPIRAIFLGVRIGDPTA----V-----GQE-QFS 147 (181)
Q Consensus 116 -----------------------------~--------l-~~~~~~~~~~~~i~G~R~~es~~----~-----~~~-~~~ 147 (181)
| + ..+.+..+.+.+++|....|... | +++ .+.
T Consensus 68 ~~~~saLtd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~ 147 (222)
T COG0603 68 EIGGSALTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEALN 147 (222)
T ss_pred hcCCCcCcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCCCHHHHHHHHHHHH
Confidence 1 1 12234467889999999999321 1 011 111
Q ss_pred CCCCCCCCee-EEecccCCchHHHHHHHhc
Q 030189 148 PSSPGWPPFM-RVNPILDWSYRLLINNKLF 176 (181)
Q Consensus 148 ~~~~~~~~~~-~i~Pi~~Wt~~dVw~yi~~ 176 (181)
.... .++. ...|+.+++..++|.--.+
T Consensus 148 l~~~--~~~~~i~aPl~~l~Ka~iv~l~~e 175 (222)
T COG0603 148 LGTE--KGVRIIHAPLMELTKAEIVKLADE 175 (222)
T ss_pred hhcc--CCccEEeCCeeeccHHHHHHHHHH
Confidence 1111 1333 4799999999999986544
No 77
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.7e-05 Score=67.21 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=82.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC-------CchHHHHHHHHHhhhcCceEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS-------AFPEINSFTYDTASKYVLQLDI 108 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~-------~fpe~~~f~~~~~~~~~l~~~~ 108 (181)
.+++|++|||.||+|.+.|+.+.. .++..+|+.... ..++-.+-++++++.+|+++.+
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QG---------------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~ 68 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQG---------------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYV 68 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcC---------------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEE
Confidence 589999999999999999998874 467777776443 2345566788999999999988
Q ss_pred Ecc--cHH-----------------------------HHHHHHHHhCCCcEEEEeeeCC--CccccC--CcccCCC-CCC
Q 030189 109 IRS--DFK-----------------------------SGLEALLNAKPIRAIFLGVRIG--DPTAVG--QEQFSPS-SPG 152 (181)
Q Consensus 109 ~~~--~~k-----------------------------~~l~~~~~~~~~~~~i~G~R~~--es~~~~--~~~~~~~-~~~ 152 (181)
+.- .|+ ..+.+++.+.|.+.++||+=.- ....+. ++..... |..
T Consensus 69 vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQs 148 (356)
T COG0482 69 VDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQS 148 (356)
T ss_pred EchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchh
Confidence 763 222 1244555557899999999332 211111 1111110 000
Q ss_pred C------CC-e-eEEecccCCchHHHHHHHhccc
Q 030189 153 W------PP-F-MRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 153 ~------~~-~-~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
. +. + ..+.||=+++..+|..-..++.
T Consensus 149 YfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~g 182 (356)
T COG0482 149 YFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKG 182 (356)
T ss_pred heecccCHHHHhhccccCCCCCHHHHHHHHHHcC
Confidence 0 01 1 2478999999999987766543
No 78
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=98.23 E-value=6.8e-06 Score=65.69 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=73.0
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-----c-hHHHHHHHHHhhhcCceEEEEc
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-----F-PEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-----f-pe~~~f~~~~~~~~~l~~~~~~ 110 (181)
+++++|||||||++.+|.+.+. . ++..++.-.+.. | ..-.+.++..++.+|++++...
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~---------------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~ 65 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-H---------------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLY 65 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-C---------------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEE
Confidence 4789999999999999988765 2 122222211111 1 1123667788899999986654
Q ss_pred cc-----HHHHHHHHHHhCCCcEEEEeeeCCCccccCCc-ccCCCCCCCCCeeEEecccCCchHHHHHHH
Q 030189 111 SD-----FKSGLEALLNAKPIRAIFLGVRIGDPTAVGQE-QFSPSSPGWPPFMRVNPILDWSYRLLINNK 174 (181)
Q Consensus 111 ~~-----~k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~-~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi 174 (181)
.+ .-+.+.+.+++.+...+++|.=..+-.+.... ..+. -+..-+.||..=..+++-+.|
T Consensus 66 ~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~-----~gl~~~~PLW~~d~~~l~e~i 130 (222)
T TIGR00289 66 TSGEEEKEVEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCRE-----LGLKSIAPLWHADPEKLMYEV 130 (222)
T ss_pred cCCchhHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHH-----cCCEEeccccCCCHHHHHHHH
Confidence 32 22355566666788999999877664332222 2222 145568898887777766655
No 79
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=98.22 E-value=1.2e-05 Score=64.23 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=74.8
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec--CCCC--c-hHHHHHHHHHhhhcCceEEEEcc
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE--SNSA--F-PEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id--tg~~--f-pe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
+++++|||||||+..+|.+.+. . .....+++- +... | .-..+.++..++.+|++++.+..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~--------------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H--------------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C--------------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 4678999999999999988765 3 112222222 2111 1 11236777888899999876432
Q ss_pred -----cHHHHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHHH
Q 030189 112 -----DFKSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLIN 172 (181)
Q Consensus 112 -----~~k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~ 172 (181)
+.-+.|.+++++.+.+.++.|.-..+..++..+..... -+..-+.||..=...++..
T Consensus 67 ~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~----lgl~~~~PLW~~~~~~ll~ 128 (223)
T TIGR00290 67 EGTEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRE----LGLKSFAPLWHRDPEKLME 128 (223)
T ss_pred CCCccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHh----cCCEEeccccCCCHHHHHH
Confidence 24467888888778999999999887654333222111 1455688887777666553
No 80
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.22 E-value=2.6e-05 Score=68.68 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=66.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC--CCchHHHHHHHHHhhhcCceEEEEcccH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN--SAFPEINSFTYDTASKYVLQLDIIRSDF 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg--~~fpe~~~f~~~~~~~~~l~~~~~~~~~ 113 (181)
.++.+.+|||.||++++.++.+... ..++.++.+..+ ..+.| ..+.+++++.+|++.+.+..+-
T Consensus 254 ~~vg~~LSGGlDSs~iaa~a~~~~~-------------~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 254 VPVGVLLSGGLDSSLVAAIARREAP-------------RGPVHTFSIGFEGSPDFDE-SPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred CceEEEecCChhHHHHHHHHHHhcC-------------CCCceEEEEecCCCCCCCh-HHHHHHHHHHhCCcCeEEECCH
Confidence 5799999999999999998877531 024677777654 34555 3589999999999987776421
Q ss_pred H-------H------------------HHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 114 K-------S------------------GLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 114 k-------~------------------~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
. + .+.+..+++|.+++++|.-.||-.
T Consensus 320 ~~~~~~~~~~v~~~~~p~~~~~~~~~~~l~~~a~~~G~~vlltG~GaDElf 370 (467)
T TIGR01536 320 EEGLDALPEVIYHLEDPTTIRASIPLYLLSKLAREDGVKVVLSGEGADELF 370 (467)
T ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhcCCEEEEecCcchhcc
Confidence 1 0 244556667899999999999964
No 81
>PRK13981 NAD synthetase; Provisional
Probab=98.22 E-value=6.7e-05 Score=67.29 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF 94 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f 94 (181)
++...+.....|+..++..+...++|++|||.||+|++.|+.++.. . .++..+++.+...-++..+-
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g---~----------~~v~~~~~p~~~~~~~~~~~ 326 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALG---A----------ERVRAVMMPSRYTSEESLDD 326 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhC---c----------CcEEEEECCCCCCCHHHHHH
Confidence 4555566667788888887778999999999999999999988752 0 24666777766556677888
Q ss_pred HHHHhhhcCceEEEEc
Q 030189 95 TYDTASKYVLQLDIIR 110 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~ 110 (181)
.+.+++.+|++..++.
T Consensus 327 a~~~a~~lgi~~~~i~ 342 (540)
T PRK13981 327 AAALAKNLGVRYDIIP 342 (540)
T ss_pred HHHHHHHcCCeEEEEE
Confidence 9999999999987765
No 82
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.22 E-value=7.6e-06 Score=65.24 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=60.4
Q ss_pred CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH
Q 030189 35 IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK 114 (181)
Q Consensus 35 ~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k 114 (181)
..++.+.+|||.||++++.++.+... .++.++.++.+...++=..+.+++++.+|++.+.+..+-.
T Consensus 17 ~~~i~~~LSGGlDSs~i~~~~~~~~~--------------~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~ 82 (255)
T PF00733_consen 17 DKPIGILLSGGLDSSAIAALAARQGG--------------PPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPE 82 (255)
T ss_dssp TSEEEEE--SSHHHHHHHHHHHHTCC--------------SEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HH
T ss_pred CCCEEEECCCChhHHHHHHHHHHhhC--------------CceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechh
Confidence 36899999999999999999988321 4688888887766654567799999999999877654210
Q ss_pred -------H--------------------HHHHHHHhCCCcEEEEeeeCCCc
Q 030189 115 -------S--------------------GLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 115 -------~--------------------~l~~~~~~~~~~~~i~G~R~~es 138 (181)
+ .+.+...+.+.+++++|.-.||-
T Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDel 133 (255)
T PF00733_consen 83 DLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDEL 133 (255)
T ss_dssp HHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHH
T ss_pred hHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccc
Confidence 0 12233345678999999988874
No 83
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.18 E-value=1.8e-05 Score=72.89 Aligned_cols=147 Identities=14% Similarity=0.007 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFT 95 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~ 95 (181)
++..+.-...++.-++..+.++++|+.||||||+|++.++.++.... |..+.++.+|++-+-...+++.+-.
T Consensus 342 ~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~l--------g~~~~~v~~v~mp~~~ss~~s~~~a 413 (679)
T PRK02628 342 YEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRL--------GLPRKNILAYTMPGFATTDRTKNNA 413 (679)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhh--------CCCcceEEEEECCCCCCCHHHHHHH
Confidence 33444444556666666666899999999999999999999885321 1112457777773323346889999
Q ss_pred HHHhhhcCceEEEEccc--HHH------------------------------HHHHHHHhCCCcEEEEeeeCCCccccCC
Q 030189 96 YDTASKYVLQLDIIRSD--FKS------------------------------GLEALLNAKPIRAIFLGVRIGDPTAVGQ 143 (181)
Q Consensus 96 ~~~~~~~~l~~~~~~~~--~k~------------------------------~l~~~~~~~~~~~~i~G~R~~es~~~~~ 143 (181)
+++++.+|++..++.-. +.. .|..+..+.|..++-|| .++|..-
T Consensus 414 ~~la~~LGi~~~~i~I~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~~--- 489 (679)
T PRK02628 414 VALMKALGVTAREIDIRPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELAL--- 489 (679)
T ss_pred HHHHHHhCCeEEEEEcHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHHh---
Confidence 99999999998777521 100 12223333445555555 2233211
Q ss_pred cccCCC-CCCCCCeeEEecccCCchHHHHHHHhcc
Q 030189 144 EQFSPS-SPGWPPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 144 ~~~~~~-~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
..+... . ...--++||.+-+..+|+..+++.
T Consensus 490 Gy~T~~~G---D~~~~~~~~~~l~Kt~v~~l~~~~ 521 (679)
T PRK02628 490 GWCTYGVG---DHMSHYNVNASVPKTLIQHLIRWV 521 (679)
T ss_pred CceecCCC---CcccccccccCCcHHHHHHHHHHH
Confidence 122211 1 112358999999999999887765
No 84
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.06 E-value=1.7e-05 Score=53.50 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=46.8
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHHHHH
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKSGL 117 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l 117 (181)
+++++|||+||+++++++.+... . ...+.+++++ .+.+.+
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~--~----------~~~~~~~~~~----------------------------~~~~~~ 40 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKS--G----------GPEVVALVVV----------------------------AFVRIL 40 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHh--c----------CCCEEEEEeH----------------------------HHHHHH
Confidence 57899999999999999987631 0 1357777777 345566
Q ss_pred HHHHHhCCCcEEEEeeeCCCc
Q 030189 118 EALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 118 ~~~~~~~~~~~~i~G~R~~es 138 (181)
.+..++.+.+.+++|++.+|.
T Consensus 41 ~~~a~~~~~~~Iv~G~~~~d~ 61 (86)
T cd01984 41 KRLAAEEGADVIILGHNADDV 61 (86)
T ss_pred HHHHHHcCCCEEEEcCCchhh
Confidence 777777888899999998884
No 85
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=9.6e-05 Score=61.37 Aligned_cols=127 Identities=11% Similarity=0.055 Sum_probs=80.4
Q ss_pred CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecC---CCCc------hHHHHHHHHHhhhcCce
Q 030189 35 IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFES---NSAF------PEINSFTYDTASKYVLQ 105 (181)
Q Consensus 35 ~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idt---g~~f------pe~~~f~~~~~~~~~l~ 105 (181)
+++|+|+.|||.||.|.++|++... ..+..||... -+++ ..-.+.++.+|+.++++
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~~~g---------------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~ 69 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLAARG---------------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIP 69 (377)
T ss_pred cceEEEEecCCchHHHHHHHHHhcC---------------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCe
Confidence 4789999999999999999998874 3567777542 1222 23456789999999999
Q ss_pred EEEEccc--HH--------H--------------------H-HHHH-HHhCCCcEEEEeeeCCCcc---ccCCc-ccCCC
Q 030189 106 LDIIRSD--FK--------S--------------------G-LEAL-LNAKPIRAIFLGVRIGDPT---AVGQE-QFSPS 149 (181)
Q Consensus 106 ~~~~~~~--~k--------~--------------------~-l~~~-~~~~~~~~~i~G~R~~es~---~~~~~-~~~~~ 149 (181)
++.++-. ++ + + +.+. .+..+.+.+.+|+=+--+. ..+.. .+.+.
T Consensus 70 ~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~ 149 (377)
T KOG2805|consen 70 LHQVNFVKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISK 149 (377)
T ss_pred eEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecc
Confidence 9988741 11 0 2 4444 3446788999999543221 11111 11111
Q ss_pred CCCC-CCe-----------eEEecccCCchHHHHHHHhc
Q 030189 150 SPGW-PPF-----------MRVNPILDWSYRLLINNKLF 176 (181)
Q Consensus 150 ~~~~-~~~-----------~~i~Pi~~Wt~~dVw~yi~~ 176 (181)
+.-= ..+ ....||=+|+..+|-.-..+
T Consensus 150 d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~ 188 (377)
T KOG2805|consen 150 DMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQ 188 (377)
T ss_pred cccCCceeEeecccHHHHHhhhccCcccCHHHHHHHHHh
Confidence 1100 011 13689999999999876554
No 86
>PRK05370 argininosuccinate synthase; Validated
Probab=97.97 E-value=9.8e-05 Score=64.20 Aligned_cols=126 Identities=14% Similarity=0.020 Sum_probs=78.5
Q ss_pred CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEcc-
Q 030189 34 SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRS- 111 (181)
Q Consensus 34 ~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~- 111 (181)
+.++|++|||||-|++|++..++.-. .++.++++|.|..-.|-.+.+++-+..+|. ++.++..
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~~---------------~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr 74 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQKG---------------AVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCR 74 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhcC---------------CeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccH
Confidence 45799999999999999999877541 468999999997312223445555666776 4555432
Q ss_pred -cHH---------------------------------HHHHHHHHhCCCcEEEEeee--CCCccc--cCCcccCCCCCCC
Q 030189 112 -DFK---------------------------------SGLEALLNAKPIRAIFLGVR--IGDPTA--VGQEQFSPSSPGW 153 (181)
Q Consensus 112 -~~k---------------------------------~~l~~~~~~~~~~~~i~G~R--~~es~~--~~~~~~~~~~~~~ 153 (181)
.|- +.+-++.++.|.+++.=|.- -.|..| .....+.
T Consensus 75 ~eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL~------ 148 (447)
T PRK05370 75 AQLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTN------ 148 (447)
T ss_pred HHHHHHHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHhC------
Confidence 111 12233344455555555442 111111 1111111
Q ss_pred CCeeEEecccCC-------chHHHHHHHhccccC
Q 030189 154 PPFMRVNPILDW-------SYRLLINNKLFGFIG 180 (181)
Q Consensus 154 ~~~~~i~Pi~~W-------t~~dVw~yi~~~~~~ 180 (181)
|+.-.+.|..+| +.+|--+|+.+|+|-
T Consensus 149 P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIp 182 (447)
T PRK05370 149 PELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFD 182 (447)
T ss_pred CCCeEecchhhhhcccccCCHHHHHHHHHHcCCC
Confidence 456689999999 789999999999874
No 87
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=97.95 E-value=5.8e-05 Score=65.30 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=64.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-c
Q 030189 10 SDDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-F 88 (181)
Q Consensus 10 ~~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-f 88 (181)
+.+=..+..+.+.+..|++.+.. ..++++.|||.||+|+.-|+++|.. +.++.++++|.|.. .
T Consensus 208 ~~n~tmenre~e~I~~i~k~vG~---~~Vl~~vSGgvdStV~a~Ll~~alg-------------~~R~~ai~vdNG~mrk 271 (552)
T KOG1622|consen 208 SGNFTMENREEECINEIRKWVGD---YKVLVAVSGGVDSTVCAALLRRALG-------------PDRVHAIHVDNGFMRK 271 (552)
T ss_pred ccCcchhhhhHHHHHHHHHHhcc---cceEEEecCCchHHHHHHHHHHhhC-------------CCceEEEEecccchhh
Confidence 33445667777887778777754 4799999999999999999999963 14689999999965 4
Q ss_pred hHHHHHHHHHhhhcCceEEEEcc
Q 030189 89 PEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 89 pe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
.|..+ +++...++|+++.++..
T Consensus 272 ~Ea~~-V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 272 KEAEQ-VEKTLVYLGIPITVVDA 293 (552)
T ss_pred hHHHH-HHHHHHHcCCceEEeec
Confidence 45555 44444559999988875
No 88
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.83 E-value=3.1e-05 Score=66.52 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=71.2
Q ss_pred EEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEcc--cHH-
Q 030189 39 AFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRS--DFK- 114 (181)
Q Consensus 39 ~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~--~~k- 114 (181)
++|||||-|+++++..++.-.. .++.++++|.|..= +-.+-+++-+..+|. +++++.. .|-
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~--------------~~Via~~aDlGq~~-~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~ 65 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGG--------------YEVIAVTADLGQPD-EDLEAIEEKALKLGASKHIVVDARDEFAE 65 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTT--------------EEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHH
T ss_pred CeeeCCChHHHHHHHHHHhhcC--------------ceEEEEEEECCCcH-HHHHHHHHHHHhcCCceeeecchHHHHHH
Confidence 6899999999999998887641 36889999999842 334446666778887 7777654 221
Q ss_pred ------------------------H-----HHHHHHHhCCCcEEEEeeeCCC--ccc--cCCcccCCCCCCCCCeeEEec
Q 030189 115 ------------------------S-----GLEALLNAKPIRAIFLGVRIGD--PTA--VGQEQFSPSSPGWPPFMRVNP 161 (181)
Q Consensus 115 ------------------------~-----~l~~~~~~~~~~~~i~G~R~~e--s~~--~~~~~~~~~~~~~~~~~~i~P 161 (181)
+ .+-++.++.|.+++.-|...-. ..| .....+. |++-.+.|
T Consensus 66 ~~i~~aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~------P~l~viaP 139 (388)
T PF00764_consen 66 DYIFPAIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALA------PELKVIAP 139 (388)
T ss_dssp HTHHHHHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHS------TTSEEE-G
T ss_pred HHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhC------cCCcEecc
Confidence 1 2334455567777776653322 111 1111222 45667999
Q ss_pred ccCCc--hHHHHHHHhccccC
Q 030189 162 ILDWS--YRLLINNKLFGFIG 180 (181)
Q Consensus 162 i~~Wt--~~dVw~yi~~~~~~ 180 (181)
..+|. .+|-.+|+.+|+|-
T Consensus 140 ~Rd~~~~R~~~i~ya~~~gIp 160 (388)
T PF00764_consen 140 WRDWEFSREEEIEYAKKHGIP 160 (388)
T ss_dssp GGHHHHHHHHHHHHHHHTT--
T ss_pred cchhhhhHHHHHHHHHHcCCC
Confidence 98874 68899999999873
No 89
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.74 E-value=0.00024 Score=60.92 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=81.1
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec-CCCCchHHHHHHHHHh-h---hcCceEEEEc
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE-SNSAFPEINSFTYDTA-S---KYVLQLDIIR 110 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id-tg~~fpe~~~f~~~~~-~---~~~l~~~~~~ 110 (181)
+++++-.|||-||-|..+|+.+-. .++..+|++ .+..-++..+-+..+. . .++.++....
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~mkRG---------------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~ 240 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMMKRG---------------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYV 240 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHHhcC---------------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEE
Confidence 578889999999999999998863 468888885 4455566655555544 2 2333333322
Q ss_pred cc--------------------HHHHH----HHHHHhCCCcEEEEeeeCCCccc---cCCcccCCCCCCCCCeeEEeccc
Q 030189 111 SD--------------------FKSGL----EALLNAKPIRAIFLGVRIGDPTA---VGQEQFSPSSPGWPPFMRVNPIL 163 (181)
Q Consensus 111 ~~--------------------~k~~l----~~~~~~~~~~~~i~G~R~~es~~---~~~~~~~~~~~~~~~~~~i~Pi~ 163 (181)
.+ +|+.| .++.++.|..+++||-...|-.. .++...+.. .+...++||+
T Consensus 241 v~f~~v~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i~~~----t~~pIlRPLI 316 (383)
T COG0301 241 VPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVIDSV----TNTPVLRPLI 316 (383)
T ss_pred EchHHHHHHHHhhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHHHHHhc----cCCceecccc
Confidence 22 22222 33455678899999999999322 334443332 2456899999
Q ss_pred CCchHHHHHHHhc
Q 030189 164 DWSYRLLINNKLF 176 (181)
Q Consensus 164 ~Wt~~dVw~yi~~ 176 (181)
-|..+||-+.-+.
T Consensus 317 ~~DK~eIi~~Ar~ 329 (383)
T COG0301 317 GLDKEEIIEIARR 329 (383)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999887654
No 90
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=97.66 E-value=0.0001 Score=58.85 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=60.9
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceE-EEec--CCCC--chH-HHHHHHHHhhhcCceEEEEc
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRT-IYFE--SNSA--FPE-INSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~-v~id--tg~~--fpe-~~~f~~~~~~~~~l~~~~~~ 110 (181)
+++++|||||||+..+|.+.+. . ++.+ +++. .+.. |.. -.+.++..++.+|++++...
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~---------------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~ 65 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-H---------------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIP 65 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----------------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-C---------------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEE
Confidence 5789999999999999988765 2 1222 2222 2221 211 24567777888999987654
Q ss_pred c-----cHHHHHHHHHHhCCCcEEEEeeeCCCccccCCcc-cCCCCCCCCCeeEEecccCCchHHHHH
Q 030189 111 S-----DFKSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQ-FSPSSPGWPPFMRVNPILDWSYRLLIN 172 (181)
Q Consensus 111 ~-----~~k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~-~~~~~~~~~~~~~i~Pi~~Wt~~dVw~ 172 (181)
. +..+.|.+++++.+..+++.|.=..+-.+...+. .+. -|+.-+.||..=...++..
T Consensus 66 ~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~~~~~r~~~e~vc~~-----lGl~~~~PLW~~d~~~ll~ 128 (218)
T PF01902_consen 66 TSGDEEDYVEDLKEALKELKVEAVVFGDIDSEYQRNWVERVCER-----LGLEAVFPLWGRDREELLR 128 (218)
T ss_dssp E---CCCHHHHHHHHHCTC--SEEE--TTS-HHHHHHHHHHHHH-----CT-EEE-TTTT--HHHHHH
T ss_pred ccCccchhhHHHHHHHHHcCCCEEEECcCCcHHHHHHHHHHHHH-----cCCEEEecccCCCHHHHHH
Confidence 3 3446788888887788888887655533322221 221 1456788888777766643
No 91
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0046 Score=52.91 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=81.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce-EEEEcc--c
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ-LDIIRS--D 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~-~~~~~~--~ 112 (181)
.+|++|||||-|-+|++-.+..-+. ..+-++.+|.|+. .|-++++++-+..+|.. ..++.. .
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~--------------~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~ree 69 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGG--------------AEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREE 69 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcC--------------ceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHH
Confidence 6899999999999999998877641 3678899999996 57777888878888876 444332 2
Q ss_pred HH-------------------------HH-----HHHHHHhCCCcEEEEeeeC--CCccccCCcccCCCCCCCCCeeEEe
Q 030189 113 FK-------------------------SG-----LEALLNAKPIRAIFLGVRI--GDPTAVGQEQFSPSSPGWPPFMRVN 160 (181)
Q Consensus 113 ~k-------------------------~~-----l~~~~~~~~~~~~i~G~R~--~es~~~~~~~~~~~~~~~~~~~~i~ 160 (181)
|- +| +-++.++.|.++|.-|.-- .|..|=-+... .. .|++-.+.
T Consensus 70 F~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe~~~~-al---~p~lkiiA 145 (403)
T COG0137 70 FVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELAIL-AL---NPDLKIIA 145 (403)
T ss_pred HHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeeeeehh-hh---CCCcEEEe
Confidence 21 12 2334455677777666421 22211111111 11 14566788
Q ss_pred cccCC--chHHHHHHHhccccC
Q 030189 161 PILDW--SYRLLINNKLFGFIG 180 (181)
Q Consensus 161 Pi~~W--t~~dVw~yi~~~~~~ 180 (181)
|..+| +.++.-+|..+|+|.
T Consensus 146 P~Rew~~~R~~~i~Ya~~~gip 167 (403)
T COG0137 146 PWREWNLTREEEIEYAEEHGIP 167 (403)
T ss_pred ehhhhccChHHHHHHHHHcCCC
Confidence 87655 678889999999875
No 92
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.31 E-value=0.0036 Score=56.54 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhc--CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCC-CCCceEEEecCCCCchHHHHHHHH
Q 030189 21 NAINVIQRTLALY--SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSL-TFPIRTIYFESNSAFPEINSFTYD 97 (181)
Q Consensus 21 ~a~~~i~~~~~~~--~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~-~~~~~~v~idtg~~fpe~~~f~~~ 97 (181)
...+.++++++.- ...++.+.+|||-||++++.++.+.... .......... ..++..+.+.... .|| ..+.+.
T Consensus 211 ~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~--~~~~~~~~~~~~~~l~tfsig~~~-~~D-~~~A~~ 286 (554)
T PRK09431 211 ELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAAR--RIEDDERSEAWWPQLHSFAVGLEG-SPD-LKAARE 286 (554)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcc--cccccccccccCCCceEEEEeCCC-CCh-HHHHHH
Confidence 3334445544331 2258999999999999999999776320 0000000000 0135666554322 555 467899
Q ss_pred HhhhcCceEEEEcccHHH---------------------------HHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 98 TASKYVLQLDIIRSDFKS---------------------------GLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 98 ~~~~~~l~~~~~~~~~k~---------------------------~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
+++.+|.+.+.+..+..+ -+.+.++..+.+++++|.=.||-.
T Consensus 287 vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 287 VADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhhh
Confidence 999999988776643211 123334456789999999999965
No 93
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.31 E-value=0.0021 Score=58.31 Aligned_cols=96 Identities=8% Similarity=0.087 Sum_probs=61.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHHHHHHHHhhhcCceEEEEcccHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEINSFTYDTASKYVLQLDIIRSDFK 114 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~~f~~~~~~~~~l~~~~~~~~~k 114 (181)
.++.+.+|||-||++++.++.+....... .. ....++..+.+ |.+ .||. .+.+++++.+|.+.+.+..+..
T Consensus 226 vpvgv~LSGGLDSSlIaala~~~~~~~~~----~~-~~~~~l~tfsi--g~~~~~D~-~~Ar~vA~~lg~~h~ev~~~~~ 297 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAARHLAETKA----AR-QWGQQLHSFCV--GLEGSPDL-KAAREVADYLGTVHHEFHFTVQ 297 (578)
T ss_pred CceeEeecCCccHHHHHHHHHHhhhhccc----cc-ccCCCceEEec--CCCCCCHH-HHHHHHHHHhCCCCeEEEEChH
Confidence 57999999999999999999876421000 00 00013444433 332 4554 4788899999988766543211
Q ss_pred H---------------------------HHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 115 S---------------------------GLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 115 ~---------------------------~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
+ .+.+.+++.|.+++++|.=.||-.
T Consensus 298 e~~~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDElF 349 (578)
T PLN02549 298 EGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIF 349 (578)
T ss_pred HHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhhh
Confidence 0 134456667889999999999964
No 94
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.29 E-value=0.0025 Score=52.36 Aligned_cols=147 Identities=17% Similarity=0.182 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 14 RLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
.+++.++..++.|+.-+...+...++++.|||-||++++.|+.++... . .....+..+....+..-+...+
T Consensus 4 d~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~--~-------~~~~~~~av~mP~~~~~~~~~~ 74 (268)
T COG0171 4 DLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGK--G-------DSKENVLAVRLPYGYTVQADEE 74 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhcc--c-------cchhheeeEECCCCCccccCHH
Confidence 356677788888888888777788999999999999999999999641 0 0002355566554421344555
Q ss_pred HHHHHhhhcCceEEEEc--cc---HHH---------------------H-----HHHHHHhCCCcEEEEee-eCCCcccc
Q 030189 94 FTYDTASKYVLQLDIIR--SD---FKS---------------------G-----LEALLNAKPIRAIFLGV-RIGDPTAV 141 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~--~~---~k~---------------------~-----l~~~~~~~~~~~~i~G~-R~~es~~~ 141 (181)
=+..+++.+|+...++. +- |.. . +-.+.. ....+|+|+ +++|-..
T Consensus 75 da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An--~~~~lVlGTgn~sE~~~- 151 (268)
T COG0171 75 DAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIAN--KLGGLVLGTGNKSELAL- 151 (268)
T ss_pred HHHHHHHHhCCceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHh--hcCCEEEcCCcHHHHhc-
Confidence 56777788888754443 21 100 0 111111 234555665 3333221
Q ss_pred CCcccCCCCCCCCCeeEEecccCCchHHHHHHHhcc
Q 030189 142 GQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
..+..-. .+..-++||.+-...+|+..++.-
T Consensus 152 --Gy~TkyG---Dg~~d~~Pi~~L~KtqV~~La~~l 182 (268)
T COG0171 152 --GYFTKYG---DGAVDINPIADLYKTQVYALARHL 182 (268)
T ss_pred --Cceeccc---CcccChhhhcCCcHHHHHHHHHHc
Confidence 2222211 134459999999999999988743
No 95
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.27 E-value=0.0034 Score=57.06 Aligned_cols=113 Identities=10% Similarity=0.023 Sum_probs=68.6
Q ss_pred HHHHHHHHHhc--CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhh
Q 030189 23 INVIQRTLALY--SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTAS 100 (181)
Q Consensus 23 ~~~i~~~~~~~--~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~ 100 (181)
.+.++++++.. ...++.+.+|||-||++++.++.+....... .+ ++ ....++.++.+.. ...|| ..+.+++++
T Consensus 223 r~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~-~~-~~-~~~~~l~tfsig~-~~~~D-~~~Ar~vA~ 297 (586)
T PTZ00077 223 REALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEI-DL-SK-RGMPKLHSFCIGL-EGSPD-LKAARKVAE 297 (586)
T ss_pred HHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhccccc-cc-cc-ccCCCceEEEcCC-CCCch-HHHHHHHHH
Confidence 33444444332 2258999999999999999999876320000 00 00 0002355555433 12455 467889999
Q ss_pred hcCceEEEEcccHHH---------------------------HHHHHHHhCCCcEEEEeeeCCCccc
Q 030189 101 KYVLQLDIIRSDFKS---------------------------GLEALLNAKPIRAIFLGVRIGDPTA 140 (181)
Q Consensus 101 ~~~l~~~~~~~~~k~---------------------------~l~~~~~~~~~~~~i~G~R~~es~~ 140 (181)
.+|.+.+.+..+..+ .+.+.+++.+.+++++|.-.||-..
T Consensus 298 ~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElFg 364 (586)
T PTZ00077 298 YLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELFG 364 (586)
T ss_pred HhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhcc
Confidence 999987666532111 1335566678999999999999653
No 96
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.23 E-value=0.0041 Score=56.83 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHh--cCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC-CchHHHHH
Q 030189 18 KYNNAINVIQRTLAL--YSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS-AFPEINSF 94 (181)
Q Consensus 18 ~~~~a~~~i~~~~~~--~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~-~fpe~~~f 94 (181)
.+++..+.+.++++. -...++.+..|||-||++++.++.+... .++.++.+..+. .+.| ..+
T Consensus 239 ~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~~--------------~~i~t~s~~~~~~~~dE-~~~ 303 (628)
T TIGR03108 239 ALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLSD--------------TPVNTCSIAFDDPAFDE-SAY 303 (628)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhcC--------------CCCcEEEEecCCCCCCh-HHH
Confidence 333444455555432 1235789999999999999988876421 245665554332 2444 477
Q ss_pred HHHHhhhcCceEEEEcccHH--H----------------------HHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 95 TYDTASKYVLQLDIIRSDFK--S----------------------GLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~k--~----------------------~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
.+.+++.+|.+.+++..+-. + .+.+..+ .+.+++++|.=.||-.
T Consensus 304 A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~a~-~~~kV~LsG~GgDElf 371 (628)
T TIGR03108 304 ARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDEPFADSSALPTYRVCELAR-KRVTVALSGDGGDELF 371 (628)
T ss_pred HHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH-CCCCEEEeccchhhcc
Confidence 89999999998766653211 0 1223232 3589999999999954
No 97
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0036 Score=56.39 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCce-EEEecCCCC-chH
Q 030189 15 LKTKYNNAINVIQRTLALY--SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIR-TIYFESNSA-FPE 90 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~--~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~-~v~idtg~~-fpe 90 (181)
.+..++...+.++.++++. ...++.+-+|||-||+++..++..... .... .+.+..+.. ++|
T Consensus 208 ~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~--------------~~~~~~fsvg~~~~~~~D 273 (542)
T COG0367 208 ADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAEELG--------------KEGKTTFTVGFEDSDSPD 273 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHHHhcc--------------ccceeeeEeecCCCCCch
Confidence 3444444445555555443 236899999999999999999988742 1122 245554444 444
Q ss_pred HHHHHHHHhhhcCceEEEEccc---HH----H---------------H---HHHHHHhCCCcEEEEeeeCCCcc
Q 030189 91 INSFTYDTASKYVLQLDIIRSD---FK----S---------------G---LEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 91 ~~~f~~~~~~~~~l~~~~~~~~---~k----~---------------~---l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
.++.+++++.+|.+.+.+... +. + | +.+..++++.+++++|.-+||-.
T Consensus 274 -~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~~~p~~~~~~~ply~~~~~a~~~g~kVvLSGeGADElF 346 (542)
T COG0367 274 -AKYARAVAKFLGTPHHEIILTNEELLNALPEVVKALDTPGGMAASIPLYLLSRKARAEGEKVVLSGEGADELF 346 (542)
T ss_pred -HHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhhhhcCcEEeecCccHHHHh
Confidence 467888899999876554432 11 1 1 33444556779999999999944
No 98
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.19 E-value=0.0047 Score=56.12 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=66.3
Q ss_pred HHHHHHHHHHh--cCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC----CchHHHHHH
Q 030189 22 AINVIQRTLAL--YSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS----AFPEINSFT 95 (181)
Q Consensus 22 a~~~i~~~~~~--~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~----~fpe~~~f~ 95 (181)
..+.++++++. -...++.+..|||-||++++.++.+... .+++++.+.-.. .+.|. .+.
T Consensus 245 l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~~--------------~~l~tftigf~~~~~~~~dE~-~~A 309 (589)
T TIGR03104 245 ILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAGV--------------DGLRTFSIGFEDVGGEKGDEF-EYS 309 (589)
T ss_pred HHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhcC--------------CCceEEEEEecCCCCCCCChH-HHH
Confidence 33444444433 1235899999999999999988776521 245665554221 24554 689
Q ss_pred HHHhhhcCceEEEEccc---HHH----------------------HHHHHHHhCCCcEEEEeeeCCCccc
Q 030189 96 YDTASKYVLQLDIIRSD---FKS----------------------GLEALLNAKPIRAIFLGVRIGDPTA 140 (181)
Q Consensus 96 ~~~~~~~~l~~~~~~~~---~k~----------------------~l~~~~~~~~~~~~i~G~R~~es~~ 140 (181)
+.+++.+|.+.+.+..+ +.+ .+.+..++ +.+++++|.=.||-..
T Consensus 310 ~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFg 378 (589)
T TIGR03104 310 DIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMVSHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFG 378 (589)
T ss_pred HHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhC-CCeEEeecCchHhccc
Confidence 99999999988766542 111 13333433 5899999999999653
No 99
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=97.03 E-value=0.0049 Score=49.09 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=70.0
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceE-EEec--CCC--Cc-hHHHHHHHHHhhhcCceEEEEc
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRT-IYFE--SNS--AF-PEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~-v~id--tg~--~f-pe~~~f~~~~~~~~~l~~~~~~ 110 (181)
++++-+||||||+-.+|.+.+... ++.. +.+. +++ .| -...++++..++..|+++....
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~---------------eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~ 66 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGH---------------EVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFD 66 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCC---------------eeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEe
Confidence 467889999999999998887631 2222 2222 221 12 1345667788888999988876
Q ss_pred ccH-----HHHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHH
Q 030189 111 SDF-----KSGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLI 171 (181)
Q Consensus 111 ~~~-----k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw 171 (181)
.+- -+.|.++++..+.++++.|.=..+-++..++.+... -+...+.||..-..+++-
T Consensus 67 ~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~----lGl~~~~PLWg~d~~ell 128 (223)
T COG2102 67 TSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEE----LGLKVYAPLWGRDPEELL 128 (223)
T ss_pred cCccchhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHH----hCCEEeecccCCCHHHHH
Confidence 543 246777777777888999987666443322222211 134456666554444443
No 100
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.02 E-value=0.002 Score=51.04 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=54.1
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC--CCchHHHHHHHHHhhhcCceEEEEcccH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN--SAFPEINSFTYDTASKYVLQLDIIRSDF 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg--~~fpe~~~f~~~~~~~~~l~~~~~~~~~ 113 (181)
.+++||||||.||++...+++.+. +.+|.| ...+++..-.++.++.+|.....+..+.
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~g--------------------~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl 120 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWAG--------------------FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDL 120 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhhc--------------------eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHH
Confidence 379999999999999999998873 223322 2234677777777777776554443221
Q ss_pred ----------------------HHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 114 ----------------------KSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 114 ----------------------k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
........++...+++++|.-.+-
T Consensus 121 ~~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDlLs~ 166 (255)
T COG1365 121 EDIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDLLST 166 (255)
T ss_pred HHHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEcccccc
Confidence 123445556677889999976554
No 101
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=96.92 E-value=0.0025 Score=53.35 Aligned_cols=133 Identities=20% Similarity=0.162 Sum_probs=82.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--hHHHHHHHHHhhhcCceEEEEccc-
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--PEINSFTYDTASKYVLQLDIIRSD- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--pe~~~f~~~~~~~~~l~~~~~~~~- 112 (181)
+++.++-||||||||+.|.+......+. ...++-.+-+|.|..+ ......+.+....|++++.++++.
T Consensus 52 e~v~igasGgkdstvlA~v~~~Ln~r~~---------~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~d 122 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVLDALNERHD---------YGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKD 122 (347)
T ss_pred CccccccccchhHHHHHHHHHHhhhhcC---------CCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHH
Confidence 6799999999999999999887753211 0134555667777543 456677888889999999998862
Q ss_pred ------HHHHH------------------HHHHH----hCCCcEEEEeeeCCCcc-c------cC----Cc-ccCCCCCC
Q 030189 113 ------FKSGL------------------EALLN----AKPIRAIFLGVRIGDPT-A------VG----QE-QFSPSSPG 152 (181)
Q Consensus 113 ------~k~~l------------------~~~~~----~~~~~~~i~G~R~~es~-~------~~----~~-~~~~~~~~ 152 (181)
|.+-. +++++ ..+..-.+||+..||-. + ++ ++ .-+.+.++
T Consensus 123 l~~~~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~~~~t~~ 202 (347)
T KOG2840|consen 123 LYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPS 202 (347)
T ss_pred HhccchHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhhccccccCc
Confidence 22211 12222 23455678898888842 1 11 11 11111111
Q ss_pred -CC-CeeEEecccCCchHHHHHHHhcc
Q 030189 153 -WP-PFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 153 -~~-~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
-. ..-+.+||-+=+..+|-.|-..+
T Consensus 203 ~e~~~~~r~kplk~~~~keivLya~~~ 229 (347)
T KOG2840|consen 203 LEMGIIPRLKPLKYASEKEIVLYASLS 229 (347)
T ss_pred cccCccccccccccchhhehhhHHHHH
Confidence 01 24579999998888887775443
No 102
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=96.15 E-value=0.054 Score=50.35 Aligned_cols=86 Identities=16% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCceEEEecCchhHHHHHHHH-------HHHhhhhcCCCC-------CC--CCCCC--------CCceE
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGKDSTVLLHLL-------RAGYFLHKGEQS-------CS--NGSLT--------FPIRT 79 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~-------~~~~~~~~~~~~-------~~--~~~~~--------~~~~~ 79 (181)
-.|+..+++-+...++|+.|||-||++++.|+ .++... ..... .. ....+ .-+..
T Consensus 337 ~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (700)
T PLN02339 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIRE-GDEQVKADARRIGNYADGEVPTDSKEFAKRIFYT 415 (700)
T ss_pred HHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhc-cccccchhhhhhccccccccccchhhhhcceeEE
Confidence 34666666666688999999999999988875 233210 00000 00 00000 01455
Q ss_pred EEecCCCCchHHHHHHHHHhhhcCceEEEEc
Q 030189 80 IYFESNSAFPEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 80 v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~ 110 (181)
++.-+-..-+++.+-.+++++.+|+....+.
T Consensus 416 v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~ 446 (700)
T PLN02339 416 VYMGSENSSEETRSRAKQLADEIGSSHLDVK 446 (700)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 5655556668999999999999999987765
No 103
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=95.78 E-value=0.35 Score=34.02 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=63.5
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc------hHHHHHHHHHhhhcCceEEEE-
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF------PEINSFTYDTASKYVLQLDII- 109 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f------pe~~~f~~~~~~~~~l~~~~~- 109 (181)
+|+|+++|++.|--++..+....... ..++.++|+..+... .+..+...+..+..+++...+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~-----------~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL-----------KAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLP 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh-----------CCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 47899999999988888777654321 146888998876531 122333344455677776544
Q ss_pred cccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 110 RSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 110 ~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
..+..+.+.++.++.+.+.+++|.|....
T Consensus 70 ~~~~~~~I~~~~~~~~~dllviG~~~~~~ 98 (124)
T cd01987 70 GDDVAEAIVEFAREHNVTQIVVGKSRRSR 98 (124)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCCCch
Confidence 44677889999999999999999997653
No 104
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.11 Score=44.26 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCcEEEEeeeCCCccc---------cCCc---ccCCCCCCC-CCeeEEecccCCchHHHHHHHhccccC
Q 030189 116 GLEALLNAKPIRAIFLGVRIGDPTA---------VGQE---QFSPSSPGW-PPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 116 ~l~~~~~~~~~~~~i~G~R~~es~~---------~~~~---~~~~~~~~~-~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.|.++..+.|+..++.|...++-.+ |+-+ ...-.|..| .++..++||.+-+..||-.|++--+++
T Consensus 187 ll~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~llrPLrDl~~~Ei~~y~~l~~l~ 264 (396)
T KOG2594|consen 187 LLQKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVKLLRPLRDLLSLEITSYCLLDGLA 264 (396)
T ss_pred HHHHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhccccCCCceeehhHHHHHHHHHHHHHHhhcCC
Confidence 4667777889999999999988322 2221 111112222 137779999999999999999876655
No 105
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=95.29 E-value=0.59 Score=32.18 Aligned_cols=91 Identities=9% Similarity=0.017 Sum_probs=62.5
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc----------hHHHHHHHHHhhh---cC
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF----------PEINSFTYDTASK---YV 103 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f----------pe~~~f~~~~~~~---~~ 103 (181)
+++|+++++..+..++..+....... ..++.++|+..+... ++..+.++++.+. .+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~-----------~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 69 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL-----------GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAG 69 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc-----------CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999888877765321 146888898765432 2444555555543 46
Q ss_pred ceEEE--EcccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 104 LQLDI--IRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 104 l~~~~--~~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
+++.. ...+..+.+.++.++.+.+.+++|.+....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~ 106 (130)
T cd00293 70 VKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSG 106 (130)
T ss_pred CceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 66533 333446788899988889999999987654
No 106
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=94.67 E-value=0.93 Score=31.82 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=60.7
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-c------------hHHHHHHHHHhhhcC
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-F------------PEINSFTYDTASKYV 103 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-f------------pe~~~f~~~~~~~~~ 103 (181)
+|.|+..|..+|.-++..+....... ..++.++|+.+... . .+..+.+.+..+.+|
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~-----------~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 69 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQ-----------NGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLG 69 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcC-----------CCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcC
Confidence 47889999988888888777664210 13577788764321 1 122233444455677
Q ss_pred ceEEEE---cccHHHHHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 104 LQLDII---RSDFKSGLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 104 l~~~~~---~~~~k~~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
+++... ..+..+.+.++.++.+.+++++|.+.....
T Consensus 70 ~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 70 VPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSL 108 (132)
T ss_pred CceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCc
Confidence 776433 346777888888888999999999977654
No 107
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=93.71 E-value=0.084 Score=46.20 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhh
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYF 60 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~ 60 (181)
.+++|-||||.||+|+++|+....+
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp 275 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVP 275 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcC
Confidence 5899999999999999999998864
No 108
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=92.97 E-value=1.6 Score=38.33 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=62.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC-CchHHHHHHHHHhhhcCceEEEEcccHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS-AFPEINSFTYDTASKYVLQLDIIRSDFK 114 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~-~fpe~~~f~~~~~~~~~l~~~~~~~~~k 114 (181)
.++.|-.|||-||..++.++.+-........ | .++.. +--|. .-|++.. .+++++.+|...+.+.-+..
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~----~---~~lhs--FaIGle~SPDL~a-arkVAd~igt~Hhe~~ft~q 295 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAARELKKAQAAR----G---SKLHS--FAIGLEDSPDLLA-ARKVADFIGTIHHEHTFTIQ 295 (543)
T ss_pred CceeEEeeCCchHHHHHHHHHHHHHHhhhhc----C---CCceE--EEecCCCChhHHH-HHHHHHHhCCcceEEEEcHH
Confidence 5789999999999999998887654211100 1 13333 33343 3566665 67778888877655443322
Q ss_pred H---------------------------HHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 115 S---------------------------GLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 115 ~---------------------------~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
+ -|.+.++..+.++++.|--.||-.
T Consensus 296 egidal~eVI~hLETYDvttIRastpmyLlsr~Ikk~gvkmvlSGEGsDEif 347 (543)
T KOG0571|consen 296 EGIDALDEVIYHLETYDVTTIRASTPMYLLSRKIKKLGVKMVLSGEGSDEIF 347 (543)
T ss_pred HHHHHHHHHheeeeccccceEecCCchHHHHHHHHhcceEEEEecCCchhhh
Confidence 2 266777778899999999888843
No 109
>PRK10490 sensor protein KdpD; Provisional
Probab=92.78 E-value=3 Score=39.98 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=65.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC--Cch-----HHHHHHHHHhhhcCceEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--AFP-----EINSFTYDTASKYVLQLDI 108 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--~fp-----e~~~f~~~~~~~~~l~~~~ 108 (181)
++|.|+.||+..|.-+..-.++..... .-++-++|++++. ..+ ...+.+ ++++.+|-++++
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~-----------~a~~~~l~V~~~~~~~~~~~~~~~l~~~~-~lA~~lGa~~~~ 318 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARL-----------GSVWHAVYVETPRLHRLPEKKRRAILSAL-RLAQELGAETAT 318 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhc-----------CCCEEEEEEecCCcCcCCHHHHHHHHHHH-HHHHHcCCEEEE
Confidence 579999999999977666555443211 1378999999873 221 233445 488999999877
Q ss_pred Ecc-cHHHHHHHHHHhCCCcEEEEeeeCC
Q 030189 109 IRS-DFKSGLEALLNAKPIRAIFLGVRIG 136 (181)
Q Consensus 109 ~~~-~~k~~l~~~~~~~~~~~~i~G~R~~ 136 (181)
+.. +..+.+-++.++++..-+|+|..+.
T Consensus 319 ~~~~dva~~i~~~A~~~~vt~IViG~s~~ 347 (895)
T PRK10490 319 LSDPAEEKAVLRYAREHNLGKIIIGRRAS 347 (895)
T ss_pred EeCCCHHHHHHHHHHHhCCCEEEECCCCC
Confidence 765 6888999999999999999999654
No 110
>PRK09982 universal stress protein UspD; Provisional
Probab=90.59 E-value=5.1 Score=29.04 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=55.3
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-------chH---HHH--------HHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-------FPE---INS--------FTYD 97 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-------fpe---~~~--------f~~~ 97 (181)
.+|.|+..|+..|.-++.-+........ .++.++|+..+.. +++ ..+ .+++
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~-----------a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHND-----------AHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYK 72 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhC-----------CeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHH
Confidence 5799999999999888886665543111 3577788764311 111 111 1223
Q ss_pred Hhhhc---CceEEEEcccHHHHHHHHHHhCCCcEEEEeeeC
Q 030189 98 TASKY---VLQLDIIRSDFKSGLEALLNAKPIRAIFLGVRI 135 (181)
Q Consensus 98 ~~~~~---~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~ 135 (181)
+.+.. +....+...+..+.+-++.++.+.+.+++|.|+
T Consensus 73 ~~~~~~~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~~ 113 (142)
T PRK09982 73 LTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHH 113 (142)
T ss_pred HHHhcCCCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCCh
Confidence 33322 233444455667778888888899999999874
No 111
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=90.09 E-value=5.5 Score=28.61 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=56.4
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-------------------hHHHHHHHH
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-------------------PEINSFTYD 97 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-------------------pe~~~f~~~ 97 (181)
.|.|++.|...|.-++..+.+..... ..++.++|+.+...+ .+..+.+++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~-----------~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 69 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK-----------GQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLP 69 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC-----------CCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998888777653210 146788887643211 011222332
Q ss_pred H---hhhcCceE--EEEcc-cHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 98 T---ASKYVLQL--DIIRS-DFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 98 ~---~~~~~l~~--~~~~~-~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
. ++..+++. ..+.. +..+.+-++.++.+.+.+++|.|.-..
T Consensus 70 ~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~ 116 (146)
T cd01989 70 YRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNH 116 (146)
T ss_pred HHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCc
Confidence 2 22345544 33333 566778888888889999999986543
No 112
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.20 E-value=5 Score=38.05 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=69.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--h----HHHHHHHHHhhhcCceEEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--P----EINSFTYDTASKYVLQLDII 109 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--p----e~~~f~~~~~~~~~l~~~~~ 109 (181)
++|.|+.||+-.|.-+.--+.+..... .-+..+||++++..+ + ....-..++++.+|=.++++
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~-----------~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l 317 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRL-----------HAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTL 317 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHh-----------CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 689999999999987776555553211 147899999998754 1 23334567889999999887
Q ss_pred c-ccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 110 R-SDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 110 ~-~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
. .++.+.+-+|.+.++..-+|+|..+.-
T Consensus 318 ~~~dv~~~i~~ya~~~~~TkiViG~~~~~ 346 (890)
T COG2205 318 YGGDVAKAIARYAREHNATKIVIGRSRRS 346 (890)
T ss_pred eCCcHHHHHHHHHHHcCCeeEEeCCCcch
Confidence 6 678899999999999888999986654
No 113
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=89.19 E-value=6.5 Score=28.22 Aligned_cols=89 Identities=9% Similarity=0.074 Sum_probs=55.1
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--ch--------H--------HHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--FP--------E--------INSFTYD 97 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--fp--------e--------~~~f~~~ 97 (181)
.+|.++..|...|.-++..+........ .++.++|++.+.. ++ + ..+.+++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYN-----------AKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhC-----------CEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 5799999999998888776665432111 3577777753211 10 1 1122344
Q ss_pred HhhhcCceEE--E-EcccHHHHHHHHHHhCCCcEEEEeeeC
Q 030189 98 TASKYVLQLD--I-IRSDFKSGLEALLNAKPIRAIFLGVRI 135 (181)
Q Consensus 98 ~~~~~~l~~~--~-~~~~~k~~l~~~~~~~~~~~~i~G~R~ 135 (181)
+.+..|++.. . ...+..+.+-++.++.+.+++|+|.|.
T Consensus 73 ~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 73 LSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred HHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc
Confidence 4455666542 2 234556677778888899999999995
No 114
>PRK10116 universal stress protein UspC; Provisional
Probab=88.26 E-value=7.5 Score=27.74 Aligned_cols=92 Identities=11% Similarity=0.015 Sum_probs=58.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec-CCC---Cc-----hH--------HHHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE-SNS---AF-----PE--------INSFTYDT 98 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id-tg~---~f-----pe--------~~~f~~~~ 98 (181)
.+|.++..|.-+|.-++..+......+. .++.++++- ... .+ .+ ..+++++.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVN-----------GKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKL 72 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhC-----------CEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999998888888777666543111 245555542 111 01 11 12445555
Q ss_pred hhhcCceE---EEEcccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 99 ASKYVLQL---DIIRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 99 ~~~~~l~~---~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
...+|++. +....+..+.+-++.++.+.+++|+|.|....
T Consensus 73 ~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~ 115 (142)
T PRK10116 73 IQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSF 115 (142)
T ss_pred HHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchH
Confidence 66677643 33345566778888888899999999997654
No 115
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=85.40 E-value=9.6 Score=26.10 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=57.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH--------HHHHHHh--------
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN--------SFTYDTA-------- 99 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~--------~f~~~~~-------- 99 (181)
++|.|+++|+.+|..++.-+........ .++.++|+.......... ...+...
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~-----------~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSG-----------AEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAE 71 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHT-----------CEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhC-----------CeEEEEEeeccccccccccccccccccccchhhhhhhHHHH
Confidence 6899999999999988877666543211 357888877543221100 0000100
Q ss_pred --hh---cCceEEEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 100 --SK---YVLQLDIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 100 --~~---~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
.. ..........+..+.+-++.++.+.+++++|.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~ 114 (140)
T PF00582_consen 72 EAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRS 114 (140)
T ss_dssp HHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTT
T ss_pred HHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCC
Confidence 01 122234445678888999999999999999999843
No 116
>PRK11175 universal stress protein UspE; Provisional
Probab=78.96 E-value=31 Score=28.04 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=30.6
Q ss_pred HHHHHhhhcCceE---EEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 94 FTYDTASKYVLQL---DIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 94 f~~~~~~~~~l~~---~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
.++++.+.++++. ++...+..+.+.++.++.+.+++++|.+.--
T Consensus 227 ~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~ 273 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRT 273 (305)
T ss_pred HHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccC
Confidence 3455555667653 3344556677888888889999999997544
No 117
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=11 Score=27.39 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHHHHhcC-CCceEEEecCch----------hHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC
Q 030189 26 IQRTLALYS-IEEVAFSFNGGK----------DSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS 86 (181)
Q Consensus 26 i~~~~~~~~-~~~i~va~SGGK----------DS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~ 86 (181)
++++++.+. .+.+.+.|+|+| |+.+..-++..++.. . +.+..+|+++-|.
T Consensus 15 ~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~--a---------p~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 15 FEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH--A---------PEDVHFVHVYVGN 75 (128)
T ss_pred HHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh--C---------CCceEEEEEEecC
Confidence 444555542 367999999999 778888888888641 1 1357778888774
No 118
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=75.17 E-value=42 Score=29.31 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhh
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASK 101 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~ 101 (181)
+.+.+++++....+..-+++||.|.=......+...- . | =.++-.+. -|-.++.+++.+.++
T Consensus 64 T~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~-----~------G-----D~vl~~~~--~YG~t~~~~~~~l~~ 125 (396)
T COG0626 64 TRDALEEALAELEGGEDAFAFSSGMAAISTALLALLK-----A------G-----DHVLLPDD--LYGGTYRLFEKILQK 125 (396)
T ss_pred cHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcC-----C------C-----CEEEecCC--ccchHHHHHHHHHHh
Confidence 3455666665554466789999996655554332211 1 1 13333333 588899999999999
Q ss_pred cCceEEEEcc
Q 030189 102 YVLQLDIIRS 111 (181)
Q Consensus 102 ~~l~~~~~~~ 111 (181)
+|+++..+.+
T Consensus 126 ~gi~~~~~d~ 135 (396)
T COG0626 126 FGVEVTFVDP 135 (396)
T ss_pred cCeEEEEECC
Confidence 9999987776
No 119
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=73.77 E-value=32 Score=25.11 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCce-EEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHh
Q 030189 21 NAINVIQRTLALYSIEEV-AFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTA 99 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i-~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~ 99 (181)
++++.+++ ++ +++ +++.|.|+..-.|..+++.. .++.+++.. ++.++.++...
T Consensus 13 qtLdVi~~----~~-d~f~v~~Lsa~~n~~~L~~q~~~f-----------------~p~~v~i~~----~~~~~~l~~~~ 66 (129)
T PF02670_consen 13 QTLDVIRK----HP-DKFEVVALSAGSNIEKLAEQAREF-----------------KPKYVVIAD----EEAYEELKKAL 66 (129)
T ss_dssp HHHHHHHH----CT-TTEEEEEEEESSTHHHHHHHHHHH-----------------T-SEEEESS----HHHHHHHHHHH
T ss_pred HHHHHHHh----CC-CceEEEEEEcCCCHHHHHHHHHHh-----------------CCCEEEEcC----HHHHHHHHHHh
Confidence 45555555 32 333 78888899999988888775 245566644 33444444433
Q ss_pred hhcCceEEEEcccHHHHHHHHHHhCCCcEEEEeeeC
Q 030189 100 SKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGVRI 135 (181)
Q Consensus 100 ~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~ 135 (181)
...+.++.++.. .+++.++......+.++.++--
T Consensus 67 ~~~~~~~~v~~G--~~~l~~~~~~~~~D~vv~Ai~G 100 (129)
T PF02670_consen 67 PSKGPGIEVLSG--PEGLEELAEEPEVDIVVNAIVG 100 (129)
T ss_dssp HHTTSSSEEEES--HHHHHHHHTHTT-SEEEE--SS
T ss_pred hhcCCCCEEEeC--hHHHHHHhcCCCCCEEEEeCcc
Confidence 223344444443 4677777776678888777643
No 120
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=70.51 E-value=40 Score=26.05 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceE-EEEcccHHHHHHHHHH
Q 030189 44 GGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQL-DIIRSDFKSGLEALLN 122 (181)
Q Consensus 44 GGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~-~~~~~~~k~~l~~~~~ 122 (181)
.+-|-=+..|+++.+.. +-..-+|+.+.. ++..+.++++.++||=+. +.+..++++.++++.
T Consensus 12 ~~rd~ritthvartARa--------------fGa~~~yiv~~~--~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k- 74 (176)
T PRK03958 12 PERDKRITTHVGLTARA--------------LGADKIILASND--EHVKESVEDIVERWGGPFEVEVTKSWKKEIREWK- 74 (176)
T ss_pred cccccchhhHHHHHHHH--------------cCCceEEEecCc--HHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHH-
Confidence 46677788898887743 346778888764 889999999999998776 445678899998887
Q ss_pred hCC--CcEEEEeeeCCCcc
Q 030189 123 AKP--IRAIFLGVRIGDPT 139 (181)
Q Consensus 123 ~~~--~~~~i~G~R~~es~ 139 (181)
..| ..++.+|.|..++.
T Consensus 75 ~~G~vvhLtmyga~~~~~~ 93 (176)
T PRK03958 75 DGGIVVHLTMYGENIQDVE 93 (176)
T ss_pred hCCcEEEEEEecCCccchH
Confidence 444 56799999998854
No 121
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=68.49 E-value=27 Score=28.38 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHH
Q 030189 19 YNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDT 98 (181)
Q Consensus 19 ~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~ 98 (181)
.+.++.+...+.+++....--|-|-| =|+.+-+-++.... +.++.|+=+| ..+.+|+++.
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lG-DDDLtSlA~al~~~--------------~~~I~VvDiD-----eRll~fI~~~ 86 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLG-DDDLTSLALALTGL--------------PKRITVVDID-----ERLLDFINRV 86 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES--TT-HHHHHHHHT----------------SEEEEE-S------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEc-CCcHHHHHHHhhCC--------------CCeEEEEEcC-----HHHHHHHHHH
Confidence 44666666676777643333344444 55555444443221 1245555554 4689999999
Q ss_pred hhhcCceEEEEccc
Q 030189 99 ASKYVLQLDIIRSD 112 (181)
Q Consensus 99 ~~~~~l~~~~~~~~ 112 (181)
++++|+++..+..+
T Consensus 87 a~~~gl~i~~~~~D 100 (243)
T PF01861_consen 87 AEEEGLPIEAVHYD 100 (243)
T ss_dssp HHHHT--EEEE---
T ss_pred HHHcCCceEEEEec
Confidence 99999998887754
No 122
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=66.21 E-value=33 Score=22.22 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=38.1
Q ss_pred CceEEEecCchhH---HHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc
Q 030189 36 EEVAFSFNGGKDS---TVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 36 ~~i~va~SGGKDS---~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
+...|.++||-|- ..+-.-+-++.. + . ...+-++.|. -+-.....++.++..|++++.+.++
T Consensus 2 ~g~rVli~GgR~~~D~~~i~~~Ld~~~~---~----------~-~~~~lvhGga-~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 2 EGMRVLITGGRDWTDHELIWAALDKVHA---R----------H-PDMVLVHGGA-PKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred CCCEEEEEECCccccHHHHHHHHHHHHH---h----------C-CCEEEEECCC-CCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 3456788899654 443333333321 1 1 2233444444 2445667788888889999999988
Q ss_pred HH
Q 030189 113 FK 114 (181)
Q Consensus 113 ~k 114 (181)
++
T Consensus 67 W~ 68 (71)
T PF10686_consen 67 WQ 68 (71)
T ss_pred hh
Confidence 65
No 123
>PRK08114 cystathionine beta-lyase; Provisional
Probab=65.71 E-value=91 Score=27.11 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhc
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKY 102 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~ 102 (181)
.+.+++.+.......-++.||.|--.+.++.+.. .. . .+ .+| + +...|..+..+.+++.+++
T Consensus 64 ~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~---~----------GD-~Vv-~-~~~~Yg~t~~l~~~~l~~~ 125 (395)
T PRK08114 64 HFSLQEAMCELEGGAGCALYPCGAAAVANAILAF--VE---Q----------GD-HVL-M-TGTAYEPTQDFCSKILSKL 125 (395)
T ss_pred HHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cC---C----------CC-EEE-E-eCCCcHHHHHHHHHHHHhc
Confidence 4455555544333456778888855554333221 11 1 11 233 2 2456889999999888999
Q ss_pred CceEEEEcc
Q 030189 103 VLQLDIIRS 111 (181)
Q Consensus 103 ~l~~~~~~~ 111 (181)
|+++..+.+
T Consensus 126 Gi~v~~vd~ 134 (395)
T PRK08114 126 GVTTTWFDP 134 (395)
T ss_pred CcEEEEECC
Confidence 999988875
No 124
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=64.53 E-value=45 Score=28.29 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=37.6
Q ss_pred ecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce---EEEEcccH-H---
Q 030189 42 FNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ---LDIIRSDF-K--- 114 (181)
Q Consensus 42 ~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~---~~~~~~~~-k--- 114 (181)
-|.|| ++.+|++++.+.. ..-.++|+|.+..+. -.+ .+.+|++ +.++.|+- .
T Consensus 62 ~ssGK-ttLaL~~ia~~q~--------------~g~~~a~ID~e~~ld--~~~----a~~lGvdl~rllv~~P~~~E~al 120 (322)
T PF00154_consen 62 ESSGK-TTLALHAIAEAQK--------------QGGICAFIDAEHALD--PEY----AESLGVDLDRLLVVQPDTGEQAL 120 (322)
T ss_dssp TTSSH-HHHHHHHHHHHHH--------------TT-EEEEEESSS-----HHH----HHHTT--GGGEEEEE-SSHHHHH
T ss_pred CCCch-hhhHHHHHHhhhc--------------ccceeEEecCcccch--hhH----HHhcCccccceEEecCCcHHHHH
Confidence 45577 7888888887742 235789999876552 122 3345663 56677753 3
Q ss_pred HHHHHHHHhCCCcEEEE
Q 030189 115 SGLEALLNAKPIRAIFL 131 (181)
Q Consensus 115 ~~l~~~~~~~~~~~~i~ 131 (181)
+.++.+++....+++|.
T Consensus 121 ~~~e~lirsg~~~lVVv 137 (322)
T PF00154_consen 121 WIAEQLIRSGAVDLVVV 137 (322)
T ss_dssp HHHHHHHHTTSESEEEE
T ss_pred HHHHHHhhcccccEEEE
Confidence 24555666554555543
No 125
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=64.14 E-value=65 Score=28.34 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhh
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTAS 100 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~ 100 (181)
...+.+++.+..+....-+++||+|-....++-+.. .. . .+ .+|. +...|..|..+.....+
T Consensus 61 Ptv~~lE~~la~leg~~~av~~~SG~aAi~~al~al--l~---~----------GD-~VI~--~~~~Y~~T~~~~~~~l~ 122 (432)
T PRK06702 61 PTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNI--CS---S----------GD-HLLC--SSTVYGGTFNLFGVSLR 122 (432)
T ss_pred cHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh--cC---C----------CC-EEEE--CCCchHHHHHHHHHHHH
Confidence 355667777766543455788999966554333221 11 1 11 2222 44567778888777777
Q ss_pred hcCceEEEEcc
Q 030189 101 KYVLQLDIIRS 111 (181)
Q Consensus 101 ~~~l~~~~~~~ 111 (181)
.+|+++..+..
T Consensus 123 ~~Gi~v~~vd~ 133 (432)
T PRK06702 123 KLGIDVTFFNP 133 (432)
T ss_pred HCCCEEEEECC
Confidence 78888777654
No 126
>PRK07050 cystathionine beta-lyase; Provisional
Probab=62.50 E-value=1e+02 Score=26.55 Aligned_cols=70 Identities=10% Similarity=-0.043 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhc
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKY 102 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~ 102 (181)
.+.+++.+..+....-++.++||.....++-... .. . .+ .++.. ...|+.+..+.+...+.+
T Consensus 67 ~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al--~~---~----------GD-~Vl~~--~~~y~~~~~~~~~~~~~~ 128 (394)
T PRK07050 67 SLALAQRLAEIEGGRHALLQPSGLAAISLVYFGL--VK---A----------GD-DVLIP--DNAYGPNRDHGEWLARDF 128 (394)
T ss_pred HHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHH--hC---C----------CC-EEEEe--cCCcccHHHHHHHHHHhc
Confidence 4455655555432345778888866654333222 11 1 01 22222 234566666666666667
Q ss_pred CceEEEEc
Q 030189 103 VLQLDIIR 110 (181)
Q Consensus 103 ~l~~~~~~ 110 (181)
|+++..+.
T Consensus 129 Gi~v~~vd 136 (394)
T PRK07050 129 GITVRFYD 136 (394)
T ss_pred CeEEEEEC
Confidence 77666554
No 127
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=62.30 E-value=7.5 Score=21.88 Aligned_cols=17 Identities=24% Similarity=-0.048 Sum_probs=15.5
Q ss_pred CCchHHHHHHHhccccC
Q 030189 164 DWSYRLLINNKLFGFIG 180 (181)
Q Consensus 164 ~Wt~~dVw~yi~~~~~~ 180 (181)
.|+..|+-.||..|+|-
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 59999999999999874
No 128
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=61.90 E-value=26 Score=29.09 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=28.1
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE 90 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe 90 (181)
|+=.+|.|| +++++|++..+-. ..-.++|+||...|+.
T Consensus 65 iyG~~gsGK-T~lal~~~~~aq~--------------~g~~a~fIDtE~~l~p 102 (279)
T COG0468 65 IYGPESSGK-TTLALQLVANAQK--------------PGGKAAFIDTEHALDP 102 (279)
T ss_pred EecCCCcch-hhHHHHHHHHhhc--------------CCCeEEEEeCCCCCCH
Confidence 566688887 7888999988742 1238899999886643
No 129
>PRK15005 universal stress protein F; Provisional
Probab=59.51 E-value=60 Score=22.90 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.4
Q ss_pred eEEEEcccHHHHHHHHHHhCCCcEEEEeeeC
Q 030189 105 QLDIIRSDFKSGLEALLNAKPIRAIFLGVRI 135 (181)
Q Consensus 105 ~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~ 135 (181)
+.++...+..+.+-++.++.+.+++|+|.|+
T Consensus 87 ~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~ 117 (144)
T PRK15005 87 HVHVEEGSPKDRILELAKKIPADMIIIASHR 117 (144)
T ss_pred EEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3444455666778888888889999999885
No 130
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=58.38 E-value=1.2e+02 Score=26.12 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecCch
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGK 46 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGK 46 (181)
..+.+++.+..+....-.+.|++|-
T Consensus 65 ~~~~le~~lA~l~g~~~~i~~ssG~ 89 (398)
T PRK08249 65 TVQAFEEKVRILEGAEAATAFSTGM 89 (398)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCChH
Confidence 3455666665543334568888884
No 131
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=58.33 E-value=40 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=27.1
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS 86 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~ 86 (181)
..+++|+|||-|-.++|--+.... .++-++..|-|+
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqG---------------yeViay~AnvGQ 41 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQG---------------YEVIAYLANVGQ 41 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcC---------------ceEEEeeccccc
Confidence 578999999999888776554432 467777788886
No 132
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=56.52 E-value=93 Score=24.20 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC--CC--chH--HHHH
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN--SA--FPE--INSF 94 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg--~~--fpe--~~~f 94 (181)
.+.+.+...++.- +...|++|||..=..++..+...... .. ..-.++.++.+|.. .. -++ ....
T Consensus 6 ~~a~~l~~~i~~~--~~~~i~lsgG~T~~~~~~~l~~~~~~-~~-------~~~~~v~v~~~der~~v~~~~~~sn~~~~ 75 (232)
T cd01399 6 AAAELIAELIREK--PPAVLGLATGSTPLGVYEELIELHKE-GG-------LSFSNVTTFNLDEYVGLPPDHPQSYHYFM 75 (232)
T ss_pred HHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHHHh-cC-------CcHHHeEEEeCceecCCCCCcchhHHHHH
Confidence 4455566666663 46789999997755555544332100 00 00035888888844 32 222 2233
Q ss_pred HHHHhhhcCceE---EEEcccHH------HHHHHHHHhC-CCcEEEEeeeCCC
Q 030189 95 TYDTASKYVLQL---DIIRSDFK------SGLEALLNAK-PIRAIFLGVRIGD 137 (181)
Q Consensus 95 ~~~~~~~~~l~~---~~~~~~~k------~~l~~~~~~~-~~~~~i~G~R~~e 137 (181)
.+.+.++++.+- +....+.+ +..++.++.. +.++.++|+=.+-
T Consensus 76 ~~~l~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~l~~~~~~Dl~llGiG~dg 128 (232)
T cd01399 76 RENLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAEAGGIDLQLLGIGENG 128 (232)
T ss_pred HHHhhccCCCCHHHEecCCCCccCHHHHHHHHHHHHHHcCCCCEEEECCCCCc
Confidence 556666776553 22222211 1344445543 4899999997754
No 133
>PRK15456 universal stress protein UspG; Provisional
Probab=56.40 E-value=70 Score=22.70 Aligned_cols=89 Identities=9% Similarity=-0.033 Sum_probs=51.7
Q ss_pred CceEEEecCch--hHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-------ch---H--------HHHHH
Q 030189 36 EEVAFSFNGGK--DSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-------FP---E--------INSFT 95 (181)
Q Consensus 36 ~~i~va~SGGK--DS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-------fp---e--------~~~f~ 95 (181)
.+|.++..|+. .|.-++..+...... . .++.++|+-.+.. .+ + ..+.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~----------~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D----------GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERL 70 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C----------CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHH
Confidence 57999999884 577777766654321 0 2456666543210 01 1 11223
Q ss_pred HHHhhhc---Cc--eEEEEcccHHHHHHHHHHhCCCcEEEEeeeCC
Q 030189 96 YDTASKY---VL--QLDIIRSDFKSGLEALLNAKPIRAIFLGVRIG 136 (181)
Q Consensus 96 ~~~~~~~---~l--~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~ 136 (181)
+++.+.+ ++ ..++...+..+.+-++.++.+.+++|+|.|..
T Consensus 71 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~ 116 (142)
T PRK15456 71 QTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNP 116 (142)
T ss_pred HHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCC
Confidence 3344333 23 33444556667777888888999999999963
No 134
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=55.35 E-value=70 Score=25.83 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=42.6
Q ss_pred ceEEEecCCCCchHHHHHHHHHhhh-----cCceEEEEcccHHHHHHHHHHhC-----CCcEEEEeeeCCCcc
Q 030189 77 IRTIYFESNSAFPEINSFTYDTASK-----YVLQLDIIRSDFKSGLEALLNAK-----PIRAIFLGVRIGDPT 139 (181)
Q Consensus 77 ~~~v~idtg~~fpe~~~f~~~~~~~-----~~l~~~~~~~~~k~~l~~~~~~~-----~~~~~i~G~R~~es~ 139 (181)
+..+|+..|.+|.-+..-++.+... .|.++..+..++...++.+.... ...++++|+-.+.+.
T Consensus 79 iQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s 151 (265)
T COG4822 79 IQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHS 151 (265)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccH
Confidence 6678999999987666555555443 35666666667777766665542 246889999887754
No 135
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=54.62 E-value=26 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=28.2
Q ss_pred eEEEecCCCCc-hHHHHHHHHHhhhcCceEEEEccc
Q 030189 78 RTIYFESNSAF-PEINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 78 ~~v~idtg~~f-pe~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
+++++|||... ++..+.++++++.+++++.+...+
T Consensus 120 ~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~ 155 (166)
T PF07796_consen 120 RVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGD 155 (166)
T ss_pred eEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCC
Confidence 67899999643 556888999999999999887654
No 136
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=54.59 E-value=1.4e+02 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCCceEEEecCch
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGK 46 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGK 46 (181)
...+++.+..+...+-.+++++|.
T Consensus 63 ~~~Le~~lA~~~g~~~~i~~~sG~ 86 (388)
T PRK07811 63 RTALEEQLAALEGGAYGRAFSSGM 86 (388)
T ss_pred HHHHHHHHHHHhCCCceEEeCCHH
Confidence 445666555543234567778883
No 137
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.38 E-value=1e+02 Score=23.96 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=37.9
Q ss_pred CCceEEEec-CCCCchHHHHHHHHHhhhc-----CceEEE------Ecc------cHHHHHHHHHHhCCCcEEEEeeeCC
Q 030189 75 FPIRTIYFE-SNSAFPEINSFTYDTASKY-----VLQLDI------IRS------DFKSGLEALLNAKPIRAIFLGVRIG 136 (181)
Q Consensus 75 ~~~~~v~id-tg~~fpe~~~f~~~~~~~~-----~l~~~~------~~~------~~k~~l~~~~~~~~~~~~i~G~R~~ 136 (181)
.++.++|+| .+..+.+..+..+++.+.+ .+++.. -.+ +-.+++.++++ .+..+|+|.+
T Consensus 57 kDiDv~yFD~~dls~e~e~~~~kkl~~~f~~~~~~~evkNQArmHlw~~~~~~ytst~~ais~w~~----~~taVGvRl~ 132 (184)
T COG3575 57 KDIDVIYFDDADLSYEAEAALEKKLAEQFPQLRYPWEVKNQARMHLWSNGKFPYTSTEEAISYWLE----TATAVGVRLN 132 (184)
T ss_pred ccceEEEecCcccChHHHHHHHHHHHHhccCCCCceeeecceeeeeecCCCCCcccHHHHHHHHHh----hheeEEEEec
Confidence 469999999 6566666555555555543 222211 111 13367888885 4788999998
Q ss_pred Ccc
Q 030189 137 DPT 139 (181)
Q Consensus 137 es~ 139 (181)
+..
T Consensus 133 ~~g 135 (184)
T COG3575 133 AQG 135 (184)
T ss_pred CCC
Confidence 864
No 138
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=54.38 E-value=56 Score=26.23 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhHHHH-HHHHHHH
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVL-LHLLRAG 58 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS~vl-l~L~~~~ 58 (181)
..+.+++...+.+ .++.++.|||-=.+.+ +-++.+.
T Consensus 100 I~~~i~~l~~~~~-~~lh~sIAGGRKtMs~~~~~a~sL 136 (224)
T PF09623_consen 100 IYRLIRELKQDPG-RRLHVSIAGGRKTMSFYAGYAASL 136 (224)
T ss_pred HHHHHHHHhhCCC-CeEEEEecCChHHHHHHHHHHHHH
Confidence 3344444444444 6899999999554443 3344444
No 139
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=53.79 E-value=49 Score=23.31 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHhcCC-CceEEEe--cCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-------hHHHHHHH
Q 030189 27 QRTLALYSI-EEVAFSF--NGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-------PEINSFTY 96 (181)
Q Consensus 27 ~~~~~~~~~-~~i~va~--SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-------pe~~~f~~ 96 (181)
+.++++|+. +-=+++| -||=.+.-+++++.+... ..+++||+-|-... |...++.+
T Consensus 27 ~g~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~--------------~~~d~IHlssC~~~~~~~~~CP~~~~~~~ 92 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKK--------------NGADVIHLSSCMVKGNPHGPCPHIDEIKK 92 (107)
T ss_pred cCccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHH--------------CCCCEEEEcCCEecCCCCCCCCCHHHHHH
Confidence 345677763 2224444 566555556666666642 34778888755322 67778888
Q ss_pred HHhhhcCceEEE
Q 030189 97 DTASKYVLQLDI 108 (181)
Q Consensus 97 ~~~~~~~l~~~~ 108 (181)
.+.+.+|++++.
T Consensus 93 ~I~~~~gi~VV~ 104 (107)
T PF08821_consen 93 IIEEKFGIEVVE 104 (107)
T ss_pred HHHHHhCCCEee
Confidence 888888888754
No 140
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=53.69 E-value=16 Score=28.96 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.1
Q ss_pred CceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc--cHH
Q 030189 76 PIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS--DFK 114 (181)
Q Consensus 76 ~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~--~~k 114 (181)
++.++-||.++=|+++++|.++++..-|..+++..- +|+
T Consensus 104 ~vdVigIDEaQFf~dl~efc~evAd~~Gk~VivagLdgdF~ 144 (234)
T KOG3125|consen 104 DVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAGLDGDFK 144 (234)
T ss_pred cceEEEecHHHHhHHHHHHHHHHHhccCCEEEEEecCCchh
Confidence 689999999999999999999999999999888653 454
No 141
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=53.36 E-value=1.5e+02 Score=25.65 Aligned_cols=28 Identities=4% Similarity=0.202 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 84 SNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 84 tg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
.+..|..++.+++++..++|+++..+.+
T Consensus 100 ~~~~Y~~t~~~~~~~l~~~gv~v~~~d~ 127 (386)
T PF01053_consen 100 SDDLYGGTYRLLEELLPRFGVEVTFVDP 127 (386)
T ss_dssp ESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred cCCccCcchhhhhhhhcccCcEEEEeCc
Confidence 3456899999999999999999988876
No 142
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=53.31 E-value=63 Score=24.89 Aligned_cols=51 Identities=12% Similarity=0.292 Sum_probs=34.1
Q ss_pred CCCCchHHHHHHHHHhhhcCceEEEEcc-----------------------cHHHHHHHHHHhCC---CcEEEEeeeC
Q 030189 84 SNSAFPEINSFTYDTASKYVLQLDIIRS-----------------------DFKSGLEALLNAKP---IRAIFLGVRI 135 (181)
Q Consensus 84 tg~~fpe~~~f~~~~~~~~~l~~~~~~~-----------------------~~k~~l~~~~~~~~---~~~~i~G~R~ 135 (181)
.+..-||..++++++ +.-|+.+.+++. +|..++++++++.+ ..++++|.+.
T Consensus 44 ~~~~tpe~~~W~~e~-k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL 120 (175)
T COG2179 44 NPDATPELRAWLAEL-KEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQL 120 (175)
T ss_pred CCCCCHHHHHHHHHH-HhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcchh
Confidence 334457777777775 445666666653 34567888888754 5688899876
No 143
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=52.73 E-value=70 Score=22.18 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCC-ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec
Q 030189 24 NVIQRTLALYSIE-EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE 83 (181)
Q Consensus 24 ~~i~~~~~~~~~~-~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id 83 (181)
..|++.+..|... =|.|+=||.+|=-+=..+++ .. + ..+.+|||-
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~-~~---P-----------~~i~ai~IR 98 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQHDPEIYAEIAR-RF---P-----------GRILAIYIR 98 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHH-HC---C-----------CCEEEEEEE
Confidence 4567777888543 37899999999333333332 22 1 368888873
No 144
>PRK06434 cystathionine gamma-lyase; Validated
Probab=52.31 E-value=1.2e+02 Score=26.09 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhh
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASK 101 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~ 101 (181)
..+.+++.+..+...+-+++||.|... ++++..+.. .. | . .++. +...|..+..+.......
T Consensus 65 ~~~~lE~~la~leg~~~av~~sSG~aA---i~~al~all--~~------G---D--~Vl~--~~~~yg~t~~~~~~~~~~ 126 (384)
T PRK06434 65 TVQAFEEKYAVLENAEHALSFSSGMGA---ITSAILSLI--KK------G---K--RILS--ISDLYGQTFYFFNKVLKT 126 (384)
T ss_pred hHHHHHHHHHHHhCCCcEEEeCCHHHH---HHHHHHHHh--CC------C---C--EEEE--ecCccchHHHHHHHHHHh
Confidence 345566666555334567899999733 333333321 11 1 1 2222 334567777777777777
Q ss_pred cCceEEEEcc
Q 030189 102 YVLQLDIIRS 111 (181)
Q Consensus 102 ~~l~~~~~~~ 111 (181)
+|+++..+..
T Consensus 127 ~Gi~v~fvd~ 136 (384)
T PRK06434 127 LGIHVDYIDT 136 (384)
T ss_pred cCcEEEEECC
Confidence 8877766553
No 145
>PRK09028 cystathionine beta-lyase; Provisional
Probab=51.74 E-value=1.6e+02 Score=25.51 Aligned_cols=56 Identities=5% Similarity=-0.024 Sum_probs=33.2
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
-++.++||.....++-+.. .. . . =.++..+. .|+.+..+.....+++|+++..+.+
T Consensus 78 ~~~~~~sG~~Ai~~~l~al--l~---~----------G-D~Vvv~~~--~Y~~t~~l~~~~l~~~Gi~v~~v~~ 133 (394)
T PRK09028 78 GTALYPSGAAAISNALLSF--LK---A----------G-DHLLMVDS--CYEPTRDLCDKILKGFGIETTYYDP 133 (394)
T ss_pred cEEEECCHHHHHHHHHHHH--hC---C----------C-CEEEEECC--CcHHHHHHHHHhhhhcceEEEEECC
Confidence 3678999987665443322 11 1 1 13444443 3677777777666778887766654
No 146
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=51.00 E-value=1.6e+02 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=18.4
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.+..+.+...+.+|+++..+.+
T Consensus 97 ~~y~~t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 97 SAYEPTRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred CCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 34677777777777778887766654
No 147
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.95 E-value=78 Score=27.52 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHH
Q 030189 11 DDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAG 58 (181)
Q Consensus 11 ~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~ 58 (181)
+...+....+..++.+++..+ |+..++++=+.||+=|+++.-.+...
T Consensus 48 D~~dl~~~~~~~~~~~~~~~~-~~~~~iivD~TGGTK~Msagl~laa~ 94 (380)
T TIGR02710 48 DIDQLYRGYQELFEAFEDLMR-YGDQEILADLTGGTKPMTAGLVLAAI 94 (380)
T ss_pred ChHHHHHHHHHHHHHHHHhhc-CCCceEEEECCCChHHHHHHHHHHHH
Confidence 445677777788888877666 76679999999999998877655444
No 148
>PRK05967 cystathionine beta-lyase; Provisional
Probab=50.29 E-value=1.7e+02 Score=25.39 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEccc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
..|+.+..++.++.+++|+++..+.++
T Consensus 111 ~~Y~~~~~l~~~~l~~~Gi~v~~vd~~ 137 (395)
T PRK05967 111 SVYYPTRHFCDTMLKRLGVEVEYYDPE 137 (395)
T ss_pred CCcHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 346778888888888899988887654
No 149
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=49.72 E-value=45 Score=22.68 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=40.2
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
++..++.+.++..++.++.++...... ..++++..|.|.+|. ...++++++.+|+.+....|
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~p~~i~tD~g~~f~--~~~~~~~~~~~~i~~~~~~~ 100 (120)
T PF00665_consen 39 YAFPVSSKETAEAALRALKRAIEKRGG----------RPPRVIRTDNGSEFT--SHAFEAWCKHLGIKHVFTPP 100 (120)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHS-----------SE-SEEEEESCHHHH--SHHHHHHHHHHT-EEEESST
T ss_pred EEEEeeccccccccccccccccccccc----------ccceecccccccccc--cchhhhHHHHcCceEeeCCC
Confidence 455566666888888888877642210 116889999998773 23566777888988777665
No 150
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=49.65 E-value=1.9e+02 Score=25.78 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH---
Q 030189 14 RLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE--- 90 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe--- 90 (181)
.|++......+.++..-..+...++ ++.||- .-+..|++.... .-+.++.+-|+..-++
T Consensus 293 ~l~~Er~rl~dal~d~~~~L~GKrv--ai~Gdp--~~~i~LarfL~e--------------lGmevV~vgt~~~~~~~~~ 354 (457)
T CHL00073 293 GLEEREEQIWESLKDYLDLVRGKSV--FFMGDN--LLEISLARFLIR--------------CGMIVYEIGIPYMDKRYQA 354 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEE--EEECCC--cHHHHHHHHHHH--------------CCCEEEEEEeCCCChhhhH
Confidence 4555555666666665555543555 477864 444455555431 1256666665543333
Q ss_pred -HHHHHHHHhhhcCceE--EEEcccHHHHHHHHHHhCCCcEEEEee
Q 030189 91 -INSFTYDTASKYVLQL--DIIRSDFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 91 -~~~f~~~~~~~~~l~~--~~~~~~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
.++-+.++++.++.+. .+-.+++.+- .+.+++.+.+++|.|.
T Consensus 355 ~d~~~l~~~~~~~~~~~~vive~~D~~el-~~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 355 AELALLEDTCRKMNVPMPRIVEKPDNYNQ-IQRIRELQPDLAITGM 399 (457)
T ss_pred HHHHHHHHHhhhcCCCCcEEEeCCCHHHH-HHHHhhCCCCEEEccc
Confidence 4556777777787753 3344555444 4556667899999997
No 151
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=49.17 E-value=1.8e+02 Score=25.44 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhh
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASK 101 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~ 101 (181)
..+.+++.+..+....-++++|+|-....++-+.. . . . | . .+|. +..+|+.+..++....++
T Consensus 65 ~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~l-l-~---~------G---d--~Vi~--~~~~y~~t~~~~~~~l~~ 126 (433)
T PRK08134 65 TVAVLEERVAALEGGVGAIATASGQAALHLAIATL-M-G---A------G---S--HIVA--SSALYGGSHNLLHYTLRR 126 (433)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-h-C---C------C---C--EEEE--eCCccHHHHHHHHHHHhh
Confidence 45566666655433334688999966655432221 1 1 1 0 1 2222 345677777777666667
Q ss_pred cCceEEEEcc
Q 030189 102 YVLQLDIIRS 111 (181)
Q Consensus 102 ~~l~~~~~~~ 111 (181)
+|+++..+.+
T Consensus 127 ~Gi~v~~vd~ 136 (433)
T PRK08134 127 FGIETTFVKP 136 (433)
T ss_pred CCeEEEEECC
Confidence 7877777654
No 152
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=47.02 E-value=1.6e+02 Score=25.89 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=24.4
Q ss_pred CCCCchHHHHHHHHHhhhcCceEEEEccc
Q 030189 84 SNSAFPEINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 84 tg~~fpe~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
++..|..|..+++++..++|+....+.++
T Consensus 122 ~~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 122 TGDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred eCCCcccHHHHHHHHHHHhCceeeeechh
Confidence 55778999999999999999988777753
No 153
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=46.93 E-value=1.8e+02 Score=24.60 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=13.2
Q ss_pred CchHHHHHHHHHhhhcCceEEEEc
Q 030189 87 AFPEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 87 ~fpe~~~f~~~~~~~~~l~~~~~~ 110 (181)
.|..+..++....+.+|+++..+.
T Consensus 88 ~y~~~~~~~~~~~~~~g~~~~~v~ 111 (369)
T cd00614 88 LYGGTYRLFERLLPKLGIEVTFVD 111 (369)
T ss_pred CcchHHHHHHHHHhhcCeEEEEeC
Confidence 455555555555555666555544
No 154
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=42.88 E-value=98 Score=20.48 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=39.8
Q ss_pred CceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCC-CcEEEEeeeC
Q 030189 76 PIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKP-IRAIFLGVRI 135 (181)
Q Consensus 76 ~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~-~~~~i~G~R~ 135 (181)
+...+++-+|..|++... .-.++.+.+-++..+...+.+....+++..+ ..++++|-..
T Consensus 24 ~~~~v~ia~g~~~~Dals-a~~~a~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiGg~~ 83 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALS-ASPLAAKNNAPILLVNNSLPSSVKAFLKSLNIKKVYIIGGEG 83 (92)
T ss_pred CCCEEEEEeCcchhhhhh-hHHHHHhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEECCCC
Confidence 456677778888888666 3444566788887777556667777777654 6677777543
No 155
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.88 E-value=2.3e+02 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHH
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTV 50 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~v 50 (181)
.+.+++.+..+...+-++.+|+|.....
T Consensus 66 ~~~Le~~lA~leg~~~al~~~sG~~Ai~ 93 (431)
T PRK08248 66 TDVFEKRIAALEGGIGALAVSSGQAAIT 93 (431)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence 3445555544433456788999975444
No 156
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=42.17 E-value=2.1e+02 Score=24.10 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 15 LKTKYNNAINVIQRTLALY-SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~-~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
+...++.+.+.+..+-... ....++++.| .|.+++.++..+.. . + .+++| |+-.+.+--|-..
T Consensus 98 ~i~~~~~a~~~ia~~~a~~i~dg~~IlTh~---~S~~v~~~l~~A~~---~------~---k~~~V-~VtESRP~~eG~~ 161 (301)
T COG1184 98 FIDRVEKAKERIAEIGAERIHDGDVILTHS---FSKTVLEVLKTAAD---R------G---KRFKV-IVTESRPRGEGRI 161 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEec---CcHHHHHHHHHhhh---c------C---CceEE-EEEcCCCcchHHH
Confidence 3444445555555443332 2467888987 56666777766642 1 0 24555 4444444334556
Q ss_pred HHHHHhhhcCceEEEEc
Q 030189 94 FTYDTASKYVLQLDIIR 110 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~ 110 (181)
+.+++ +++|+++..+.
T Consensus 162 ~ak~L-~~~gI~~~~I~ 177 (301)
T COG1184 162 MAKEL-RQSGIPVTVIV 177 (301)
T ss_pred HHHHH-HHcCCceEEEe
Confidence 66665 45788876654
No 157
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=41.95 E-value=2.2e+02 Score=24.34 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=35.2
Q ss_pred HHHHHHHHHh-cCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhh
Q 030189 23 INVIQRTLAL-YSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASK 101 (181)
Q Consensus 23 ~~~i~~~~~~-~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~ 101 (181)
.+.+++.+.. ++.+. ++.+|||.....++-.. ... . .+ .++ + +...|+.++.+.....+.
T Consensus 63 ~~~le~~la~l~g~~~-~v~~ssG~~Ai~~al~a--l~~---~----------Gd-~Vi-~-~~~~y~~t~~~~~~~~~~ 123 (390)
T PRK08133 63 VTMFQERLAALEGAEA-CVATASGMAAILAVVMA--LLQ---A----------GD-HVV-S-SRSLFGSTVSLFEKIFAR 123 (390)
T ss_pred HHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHH--HhC---C----------CC-EEE-E-ccCcchhHHHHHHHHHHH
Confidence 4445554433 34344 57789997655443221 111 1 01 222 2 223466666666666666
Q ss_pred cCceEEEEcc
Q 030189 102 YVLQLDIIRS 111 (181)
Q Consensus 102 ~~l~~~~~~~ 111 (181)
+|+++..+..
T Consensus 124 ~G~~v~~vd~ 133 (390)
T PRK08133 124 FGIETTFVDL 133 (390)
T ss_pred cCcEEEEECC
Confidence 7776665543
No 158
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=41.95 E-value=1.8e+02 Score=23.20 Aligned_cols=100 Identities=10% Similarity=0.029 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--hH----HHHHHH-HH
Q 030189 26 IQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--PE----INSFTY-DT 98 (181)
Q Consensus 26 i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--pe----~~~f~~-~~ 98 (181)
+...+.+- ++..+++|||..-.-++..+...... . ..-.++.++++|. ..+ ++ .+.+++ .+
T Consensus 20 i~~~i~~~--~~~~l~lsgG~tp~~~y~~L~~~~~~--~-------~~w~~v~~f~~DE-v~~~~~~~~~s~~~~~~~~l 87 (239)
T PRK12358 20 LLGYMSKT--KRVNLAITAGSTPKGMYEYLITLVKG--K-------AWYDNVHYYNFDE-IPFRGKEGEGVTITNLRNLF 87 (239)
T ss_pred HHHHHHhC--CCeEEEECCCCCHHHHHHHHHHHHhc--C-------CCHHHcEEEeccc-cCCCCccccccHHHHHHHHh
Confidence 44444442 57899999998888888877765210 0 0003577788886 322 12 122332 33
Q ss_pred hhhcCceE---EEEcccHHHHHHHHHHhC-CCcEEEEeeeCCC
Q 030189 99 ASKYVLQL---DIIRSDFKSGLEALLNAK-PIRAIFLGVRIGD 137 (181)
Q Consensus 99 ~~~~~l~~---~~~~~~~k~~l~~~~~~~-~~~~~i~G~R~~e 137 (181)
-+..+++- +.+..+-.+...+.+++. +.+++++|+=.|-
T Consensus 88 ~~~~~i~~~~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DG 130 (239)
T PRK12358 88 FTPAGIKEENIHKLTIDNYREHDQKLARDGGLDLVVLGLGADG 130 (239)
T ss_pred cCcCCCCHHHeeCCCHHHHHHHHHHHHhcCCCCEEEEccCCCC
Confidence 33333332 222211112233334444 5899999986554
No 159
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=41.74 E-value=49 Score=27.06 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=30.2
Q ss_pred CceEEEec--CCCC--chHHHHHHHHHhhhcCce----EEEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 76 PIRTIYFE--SNSA--FPEINSFTYDTASKYVLQ----LDIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 76 ~~~~v~id--tg~~--fpe~~~f~~~~~~~~~l~----~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
+-.++|+| ||.. ..|+.+.+++..++++.. +.++. ..+.++++-|.|.|=
T Consensus 144 ~~~ivFVDGWTGKGaI~~eL~~al~~~~~~~~~~~~~~LaVLa------------Dp~g~a~l~gT~dD~ 201 (257)
T PF11202_consen 144 PESIVFVDGWTGKGAITRELKKALAAFNARYGTRLSPDLAVLA------------DPAGCAWLAGTRDDF 201 (257)
T ss_pred CcceEEEecCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEe------------cCcccccccccccce
Confidence 45678888 7754 467777777777666632 22222 134566777776664
No 160
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=40.48 E-value=1.4e+02 Score=21.63 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=15.3
Q ss_pred ceEEEecCchhH-HHHHHHHHHHh
Q 030189 37 EVAFSFNGGKDS-TVLLHLLRAGY 59 (181)
Q Consensus 37 ~i~va~SGGKDS-~vll~L~~~~~ 59 (181)
++.++.|||-=. .+++-++.+.+
T Consensus 92 ~lh~~iaGGRK~Ms~~~~~a~sl~ 115 (124)
T TIGR03642 92 RIIVNISGGRKIMTIILALYAQLL 115 (124)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHh
Confidence 799999999444 44444555543
No 161
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=40.45 E-value=31 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=15.3
Q ss_pred ceEEEecCchhHHHHHHHHHHH
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAG 58 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~ 58 (181)
+++--.||||||.--++-+.+.
T Consensus 2 rvvaLiSGGKDScynmm~cv~~ 23 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCVRL 23 (277)
T ss_pred cEEEEEeCChHHHHHHHHHHHc
Confidence 3455689999998766655444
No 162
>PRK05968 hypothetical protein; Provisional
Probab=40.29 E-value=2.4e+02 Score=24.17 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.++.+.....+.+|+++..+..
T Consensus 110 ~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 110 HVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred CCchHHHHHHHHHHHHcCceEEEeCC
Confidence 46777777777777777877766643
No 163
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=40.15 E-value=1.5e+02 Score=22.84 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---CchH-HHHHHH
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS---AFPE-INSFTY 96 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~---~fpe-~~~f~~ 96 (181)
...+.|+..+..- ++..|++|||.--..+...+..... . . ..-.++.++++|.-. +-|+ .+.+++
T Consensus 8 ~i~~~i~~~i~~~--~~~~i~LsgGstp~~~y~~L~~~~~-~-~-------i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~ 76 (199)
T PF01182_consen 8 AIAEAIEEAIAER--GRAVIALSGGSTPKPLYQELAKLHK-E-R-------IDWSRVHFFNVDERVVPPDDPDSNYRMLR 76 (199)
T ss_dssp HHHHHHHHHHHHC--SSEEEEE--SCTHHHHHHHHHHHHH-T-C-------SCGGGEEEEESEEESSTTTSTTSHHHHHH
T ss_pred HHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHhhhcc-c-c-------CChhHeEEEeCcccccCCCCCccHHHHHH
Confidence 4445566767664 5799999999988888888877541 0 0 001357778888432 2232 344444
Q ss_pred -HHhhhcCce---EEEEcc---cHHHHH---HHHHHhC-------CCcEEEEeeeCCC
Q 030189 97 -DTASKYVLQ---LDIIRS---DFKSGL---EALLNAK-------PIRAIFLGVRIGD 137 (181)
Q Consensus 97 -~~~~~~~l~---~~~~~~---~~k~~l---~~~~~~~-------~~~~~i~G~R~~e 137 (181)
.+-+..+++ ++.+.. +..+.. .+.+.+. ..++.++|+=.|-
T Consensus 77 ~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~p~~Dl~lLG~G~DG 134 (199)
T PF01182_consen 77 EHLLDPLPIPPENIHPIDGEADDPEEAAERYEQELASLGGEAGFPGFDLVLLGMGEDG 134 (199)
T ss_dssp HHTGGGSGGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSEECESBSEEEEE--TTS
T ss_pred HHhhccCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHhccccCCCceeEEEeccccCC
Confidence 345555444 332321 233333 3333332 2899999997653
No 164
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=39.68 E-value=2e+02 Score=23.22 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=32.9
Q ss_pred CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 35 IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 35 ~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
.+.+++++|- -|+ +...+..+.. . | .+++++-++ +.+.-|-..+++++.+ .|+++..+.-
T Consensus 107 ~~~~ILT~~~--S~~-v~~~l~~a~~---~------~---~~~~V~v~e-s~P~~eG~~~a~~L~~-~gi~v~~i~d 166 (282)
T PF01008_consen 107 DGDTILTHGY--SST-VERFLLSAKK---K------G---KKFRVIVLE-SRPYNEGRLMAKELAE-AGIPVTLIPD 166 (282)
T ss_dssp TTEEEEEES----SH-HHHHHHHHHH---T------T---EEEEEEEE---TTTTHHHTHHHHHHH-TT-EEEEE-G
T ss_pred CCeEEEEeCC--chH-HHHHHHHHHH---c------C---CeEEEEEcc-CCcchhhhhHHHHhhh-cceeEEEEec
Confidence 3567888863 244 4555555532 1 1 346665444 4556666888888754 6888766653
No 165
>PRK07377 hypothetical protein; Provisional
Probab=38.68 E-value=1.9e+02 Score=22.55 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=42.1
Q ss_pred CceEEEecC----CCCchHHHHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCCCcEEEEee
Q 030189 76 PIRTIYFES----NSAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 76 ~~~~v~idt----g~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
.+++-++.+ +..+.+..+-+++..++|++++..+.-+-.+.+.+++.+...+++..+.
T Consensus 76 ~~Rlgv~~~~~~~~~~~~~l~~~l~~~~~~y~~rlElv~y~~~~~l~~aL~~~eVh~~c~~~ 137 (184)
T PRK07377 76 VMRLGVLEIETETSSVFDQLIDQLRTILDKYHLRLELVVYPDLQALEQALRDKEVHAICLES 137 (184)
T ss_pred EEEEEEEeccccccccHHHHHHHHHHHHHHhCceeeEEecCCHHHHHHHHhcCCccEEecCC
Confidence 466655543 4557788888899999999888777765677888888876677665543
No 166
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.54 E-value=2.3e+02 Score=23.32 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-ceEEEec------CchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC
Q 030189 15 LKTKYNNAINVIQRTLALYSIE-EVAFSFN------GGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA 87 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~-~i~va~S------GGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~ 87 (181)
++...+-..+.++.+-+..+++ ++.+=.| +|-+-.-.+.++..+.. ..+..+.+..+..
T Consensus 187 ~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~--------------~G~d~i~vs~g~~ 252 (327)
T cd02803 187 LENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEE--------------AGVDALHVSGGSY 252 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHH--------------cCCCEEEeCCCCC
Confidence 5555555666666666666544 5666566 34444445566655531 1234444443311
Q ss_pred -------------chHHHHHHHHHhhhcCceEEEEcccH-HHHHHHHHHhCCCcEEEEee
Q 030189 88 -------------FPEINSFTYDTASKYVLQLDIIRSDF-KSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 88 -------------fpe~~~f~~~~~~~~~l~~~~~~~~~-k~~l~~~~~~~~~~~~i~G~ 133 (181)
.+...+++..+.+..++++.....=. .+..+++++..+.+++.+|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR 312 (327)
T cd02803 253 ESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGR 312 (327)
T ss_pred cccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecH
Confidence 12344667777777788876654311 34577777765677776663
No 167
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=37.43 E-value=3.3e+02 Score=24.98 Aligned_cols=144 Identities=18% Similarity=0.125 Sum_probs=80.7
Q ss_pred HHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhh----cCC--CC--------CCCCCC-CCC-------ceEEEecCC
Q 030189 28 RTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLH----KGE--QS--------CSNGSL-TFP-------IRTIYFESN 85 (181)
Q Consensus 28 ~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~----~~~--~~--------~~~~~~-~~~-------~~~v~idtg 85 (181)
..+++-+.....+..|||.||.+.+-++...+... +.+ +. ...++. +.+ +-..|.-+.
T Consensus 342 dyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSe 421 (706)
T KOG2303|consen 342 DYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSE 421 (706)
T ss_pred HHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccc
Confidence 33455555678999999999998877766443211 111 00 001111 111 222344455
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEc-------------------ccHH-------H--HHH---------------H---
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIR-------------------SDFK-------S--GLE---------------A--- 119 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~-------------------~~~k-------~--~l~---------------~--- 119 (181)
..-.||..=.+++++..|--..-+. |.|+ + +|+ +
T Consensus 422 nSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enlaLQNiQARiRMvLaylfAqL~~ 501 (706)
T KOG2303|consen 422 NSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLALQNIQARIRMVLAYLFAQLLL 501 (706)
T ss_pred cccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888776653222222 1111 0 111 1
Q ss_pred HHHhCCCcEEEEeeeC-CCccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHhcc
Q 030189 120 LLNAKPIRAIFLGVRI-GDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 120 ~~~~~~~~~~i~G~R~-~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
.....+.-.+++|.-. ||+-+.-+....=++. -+|||=--+..|+-.|+.+-
T Consensus 502 wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSSA------DINPIGgISK~DLr~Fl~~a 554 (706)
T KOG2303|consen 502 WVRGRPGGLLVLGSANVDESLRGYLTKYDCSSA------DINPIGGISKTDLRRFLQYA 554 (706)
T ss_pred HhcCCCCceEEEecCccchHhhhhhhhcccccc------ccCCccCccHHHHHHHHHHH
Confidence 1122234578888866 4476666655544332 49999999999999998763
No 168
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=37.21 E-value=80 Score=26.26 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEc---ccHHHHHHHHHHhCCCc-EEEEeee
Q 030189 75 FPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIR---SDFKSGLEALLNAKPIR-AIFLGVR 134 (181)
Q Consensus 75 ~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~---~~~k~~l~~~~~~~~~~-~~i~G~R 134 (181)
.|=+|+|+|.- ++-.+-+-++-+++|++.+=+. ..+.+-+.+++++...+ +++|||-
T Consensus 103 ~PGrVLHiDGD---~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 103 MPGRVLHIDGD---PEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred CCCcEEeecCC---HHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 36789999864 3446666667777888874443 35677888999887655 6889985
No 169
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=36.83 E-value=2.4e+02 Score=27.19 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.1
Q ss_pred ceEEEecCchhHHHHHHHHHHHh
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGY 59 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~ 59 (181)
+|++-|-||+|+--.|.++.+..
T Consensus 632 ~v~~~F~GG~DDREALa~a~rma 654 (832)
T PLN03159 632 HVAVLFFGGPDDREALAYAWRMS 654 (832)
T ss_pred eEEEEecCCcchHHHHHHHHHHh
Confidence 78999999999999999877764
No 170
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=36.60 E-value=68 Score=24.90 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHH
Q 030189 17 TKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRA 57 (181)
Q Consensus 17 ~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~ 57 (181)
.-+.++++.|.+.++..|+---+++||-| .++++.|+..
T Consensus 84 ~~~~~sl~~l~~~i~~~GPfdGvlGFSQG--A~lAa~ll~~ 122 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENGPFDGVLGFSQG--AALAALLLAL 122 (212)
T ss_dssp ---HHHHHHHHHHHHHH---SEEEEETHH--HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCeEEEEeecHH--HHHHHHHHHH
Confidence 44668888888888887765669999998 4554444443
No 171
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=36.43 E-value=89 Score=26.08 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=41.0
Q ss_pred CCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEc---ccHHHHHHHHHHhCCCc-EEEEeeeC
Q 030189 75 FPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIR---SDFKSGLEALLNAKPIR-AIFLGVRI 135 (181)
Q Consensus 75 ~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~---~~~k~~l~~~~~~~~~~-~~i~G~R~ 135 (181)
.|=+|+|+|.-. +-.+-+-++=+++|++..=+. ..+.+-+.+++++...+ +++|||-.
T Consensus 104 ~PGkVLHlDGD~---~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 104 RPGKVLHLDGDE---EYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDG 165 (287)
T ss_pred CCCeEEEecCCH---HHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchh
Confidence 467899998643 346666666777888875444 34667789999987655 68899844
No 172
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=36.34 E-value=1.8e+02 Score=22.47 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=38.1
Q ss_pred cCCCceEEEecC-chhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC-----CCc-hHHHHHHHHHhhhc-Cc
Q 030189 33 YSIEEVAFSFNG-GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN-----SAF-PEINSFTYDTASKY-VL 104 (181)
Q Consensus 33 ~~~~~i~va~SG-GKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg-----~~f-pe~~~f~~~~~~~~-~l 104 (181)
.+.+-+-++||| |+=.-.++.+++.. +-.++.+|.| .+| +.+..|++.+.+.. ..
T Consensus 32 l~~~~iNLGfsG~~~le~~~a~~ia~~-----------------~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~t 94 (178)
T PF14606_consen 32 LGLDVINLGFSGNGKLEPEVADLIAEI-----------------DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDT 94 (178)
T ss_dssp HT-EEEEEE-TCCCS--HHHHHHHHHS-------------------SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS
T ss_pred cCCCeEeeeecCccccCHHHHHHHhcC-----------------CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 355678999999 67666777777654 2355666644 455 45778999998876 78
Q ss_pred eEEEEcc
Q 030189 105 QLDIIRS 111 (181)
Q Consensus 105 ~~~~~~~ 111 (181)
++..+.+
T Consensus 95 PIllv~~ 101 (178)
T PF14606_consen 95 PILLVSP 101 (178)
T ss_dssp -EEEEE-
T ss_pred CEEEEec
Confidence 8877764
No 173
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=36.04 E-value=2.9e+02 Score=23.93 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHH-
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEI- 91 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~- 91 (181)
+.-...+.++++.+++.++..| .+.++. . |....++..|+.+. .+..||.+...+..+.
T Consensus 53 ~~r~~Fl~esL~~L~~~L~~~g-~~L~v~-~-G~~~~vl~~L~~~~-----------------~~~~V~~~~~~~~~~~~ 112 (429)
T TIGR02765 53 PARGKFLLESLKDLRTSLRKLG-SDLLVR-S-GKPEDVLPELIKEL-----------------GVRTVFLHQEVGSEEKS 112 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCeEEE-e-CCHHHHHHHHHHHh-----------------CCCEEEEeccCCHHHHH
Confidence 3344557788999999998886 455554 3 45555666666543 4788999987776554
Q ss_pred -HHHHHHHhhhcCceEEEEc
Q 030189 92 -NSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 92 -~~f~~~~~~~~~l~~~~~~ 110 (181)
.+-+.+.+++.|+.++.+.
T Consensus 113 rd~~v~~~l~~~~i~~~~~~ 132 (429)
T TIGR02765 113 VERLLQQALARLGIHVEQHW 132 (429)
T ss_pred HHHHHHHHHHhcCceEEEec
Confidence 5666666777788865443
No 174
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.02 E-value=1.7e+02 Score=25.19 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAG 58 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~ 58 (181)
+....+...+.+++. ..+....|+|=++||+=++++.-.+...
T Consensus 51 ~~~~y~~l~~~l~~~-~~~~~~~v~vDiTGGTK~Msaglalaa~ 93 (379)
T PF09670_consen 51 PLECYRKLREVLEKL-RDFPGHEVAVDITGGTKSMSAGLALAAI 93 (379)
T ss_pred HHHHHHHHHHHHHHH-hcCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence 334444444445554 4445578999999999999888766555
No 175
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=34.95 E-value=1.6e+02 Score=26.73 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCC----ce-EEEecCchhHHHHHH-HHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIE----EV-AFSFNGGKDSTVLLH-LLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS 86 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~----~i-~va~SGGKDS~vll~-L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~ 86 (181)
..|+.+.+-..+.-++++.+||.. .| +.-.|||--+-|+|. |+.. ...++.+|.+-
T Consensus 671 EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~------------------~PDvlILDEPT 732 (807)
T KOG0066|consen 671 EYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALG------------------GPDVLILDEPT 732 (807)
T ss_pred HHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcC------------------CCCEEEecCCC
Confidence 346777777777778888888752 23 456899966666544 3321 24667788553
Q ss_pred C--chHHHHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCCCcEEEE
Q 030189 87 A--FPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 87 ~--fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~ 131 (181)
. =-|.+.-+.+....|+=-+++++-+ .+++.+.++..|++
T Consensus 733 NNLDIESIDALaEAIney~GgVi~VsHD-----eRLi~eT~C~LwVv 774 (807)
T KOG0066|consen 733 NNLDIESIDALAEAINEYNGGVIMVSHD-----ERLIVETDCNLWVV 774 (807)
T ss_pred CCcchhhHHHHHHHHHhccCcEEEEecc-----cceeeecCceEEEE
Confidence 2 1244444444455565555555544 44555555555554
No 176
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=34.48 E-value=2.3e+02 Score=22.22 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---CchH-HHHHHH
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS---AFPE-INSFTY 96 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~---~fpe-~~~f~~ 96 (181)
...+.++.+++.- +.+.+++|||.--..++..+.... .... .++.++++|.-. ..|+ .+.+++
T Consensus 10 ~i~~~i~~~i~~~--~~~~l~lsGGstp~~~y~~L~~~~-~i~w----------~~v~~f~~DEr~Vp~~~~~Sn~~~~~ 76 (219)
T cd01400 10 RIAEALAAAIAKR--GRFSLALSGGSTPKPLYELLAAAP-ALDW----------SKVHVFLGDERCVPPDDPDSNYRLAR 76 (219)
T ss_pred HHHHHHHHHHHhc--CeEEEEECCCccHHHHHHHhcccc-CCCC----------ceEEEEEeeccccCCCCcccHHHHHH
Confidence 3445566666653 578999999987777777665432 0011 357777788542 2233 233333
Q ss_pred -HHhhhcCce---EEEEcc--cHHHHH---HHHHHh-----CCCcEEEEeeeCCC
Q 030189 97 -DTASKYVLQ---LDIIRS--DFKSGL---EALLNA-----KPIRAIFLGVRIGD 137 (181)
Q Consensus 97 -~~~~~~~l~---~~~~~~--~~k~~l---~~~~~~-----~~~~~~i~G~R~~e 137 (181)
.+-+..+++ ++.+.. +..+.. .+.+++ .+.+++++|+-.|-
T Consensus 77 ~~ll~~~~~~~~~v~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~Dl~lLGmG~DG 131 (219)
T cd01400 77 EALLSHVAIPAANIHPIPTELGPEDAAAAYEKELRALFGGVPPFDLVLLGMGPDG 131 (219)
T ss_pred HHhhccCCCCHhhEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCEEEECCcCCC
Confidence 334444443 222221 222222 222333 35899999986654
No 177
>PRK11175 universal stress protein UspE; Provisional
Probab=34.02 E-value=2.5e+02 Score=22.59 Aligned_cols=91 Identities=9% Similarity=-0.041 Sum_probs=52.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC--------CchH-----------HHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--------AFPE-----------INSFTY 96 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--------~fpe-----------~~~f~~ 96 (181)
.+|.|++.|...|.-+++.+........ .++.++++-... ...+ ..+.++
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRNG-----------GKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIR 72 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhcC-----------CCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 5799999999888888877666543111 245555542111 1111 112233
Q ss_pred HHhh---hcCceEEE--E-cccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 97 DTAS---KYVLQLDI--I-RSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 97 ~~~~---~~~l~~~~--~-~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
+..+ ..|+++.. . ..+..+.+.++.++.+.+.+|+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~ 119 (305)
T PRK11175 73 EQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHD 119 (305)
T ss_pred HHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 3332 23555533 3 3456677777777888999999988654
No 178
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=33.84 E-value=2.9e+02 Score=23.30 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHH
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDST 49 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~ 49 (181)
.+.+++.+..+....-.+++|+|....
T Consensus 54 ~~~le~~la~l~g~~~~~~~~sG~~ai 80 (366)
T PRK08247 54 RGVLEQAIADLEGGDQGFACSSGMAAI 80 (366)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCHHHHH
Confidence 344555554443233468899996433
No 179
>PRK09354 recA recombinase A; Provisional
Probab=33.74 E-value=2.2e+02 Score=24.47 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=38.7
Q ss_pred ecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce---EEEEcccHH-H--
Q 030189 42 FNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ---LDIIRSDFK-S-- 115 (181)
Q Consensus 42 ~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~---~~~~~~~~k-~-- 115 (181)
.+.|| ++.++|++..+.. ..-.++|+|+...+.. + ..+.+|++ +....|+.. +
T Consensus 69 ~GsGK-TtLal~~~~~~~~--------------~G~~~~yId~E~s~~~--~----~a~~lGvdld~lli~qp~~~Eq~l 127 (349)
T PRK09354 69 ESSGK-TTLALHAIAEAQK--------------AGGTAAFIDAEHALDP--V----YAKKLGVDIDNLLVSQPDTGEQAL 127 (349)
T ss_pred CCCCH-HHHHHHHHHHHHH--------------cCCcEEEECCccchHH--H----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 44566 6777887777642 1357899999776543 2 34556765 345555322 2
Q ss_pred -HHHHHHHhCCCcEEE
Q 030189 116 -GLEALLNAKPIRAIF 130 (181)
Q Consensus 116 -~l~~~~~~~~~~~~i 130 (181)
-+..++++.+.+++|
T Consensus 128 ~i~~~li~s~~~~lIV 143 (349)
T PRK09354 128 EIADTLVRSGAVDLIV 143 (349)
T ss_pred HHHHHHhhcCCCCEEE
Confidence 344455554555433
No 180
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=33.63 E-value=3.1e+02 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHH
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDST 49 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~ 49 (181)
.+.+++.+..+....-++.+++|....
T Consensus 55 ~~~lE~~lA~l~g~~~~l~~~sG~~Ai 81 (385)
T PRK08574 55 LRPLEEALAKLEGGVDALAFNSGMAAI 81 (385)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCHHHHH
Confidence 444555554432223357788886443
No 181
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=32.74 E-value=2.5e+02 Score=22.29 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec--CCCC--chHHH--HHHHHH
Q 030189 25 VIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE--SNSA--FPEIN--SFTYDT 98 (181)
Q Consensus 25 ~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id--tg~~--fpe~~--~f~~~~ 98 (181)
.++.++..-+ +...+++|||..=.-++..+...... .. ..-.++.++.+| -|.. .++.. ...+.+
T Consensus 23 ~l~~~~~~~~-~~~~iglsgG~T~~~~~~~L~~~~~~-~~-------~~~~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l 93 (261)
T PRK00443 23 RINAFLPTKE-RPFVLGLATGSSPLETYKALIELHKA-GK-------VDFSRVTTFNLDEYVGLPADHPESYRYFMRENF 93 (261)
T ss_pred HHHHHhhccC-CceEEEecCCCCHHHHHHHHHHHhhh-cC-------CchHHeEEEeCceecCCCCCChHHHHHHHHHHH
Confidence 3444443322 34678999998866666666532110 00 001357888887 3332 23221 234456
Q ss_pred hhhcCceE---EEEcccHH------HHHHHHHHhC-CCcEEEEeeeCCC
Q 030189 99 ASKYVLQL---DIIRSDFK------SGLEALLNAK-PIRAIFLGVRIGD 137 (181)
Q Consensus 99 ~~~~~l~~---~~~~~~~k------~~l~~~~~~~-~~~~~i~G~R~~e 137 (181)
.+.++.+- .......+ +...+.++.. +.++.++|+=.+-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Dl~llGiG~dg 142 (261)
T PRK00443 94 FDHVDIPPENINLLNGNAPDPEAECRRYEEKIKSAGGIDLQILGIGENG 142 (261)
T ss_pred hccCCCCHHHeecCCCCCcCHHHHHHHHHHHHHHcCCCCEEEEccCCCC
Confidence 66666543 22222111 1244445543 4899999987643
No 182
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=32.73 E-value=1.9e+02 Score=23.30 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=26.9
Q ss_pred eEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCch
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFP 89 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fp 89 (181)
++=..+-|| ++.+++|+..+...... .| ..-+++|+||.-.|+
T Consensus 43 i~G~~gsGK-Tql~l~l~~~~~l~~~~-----~g---~~~~vvyidTe~~f~ 85 (256)
T PF08423_consen 43 IVGESGSGK-TQLCLQLAVNVQLPEEI-----GG---LGGKVVYIDTEGTFS 85 (256)
T ss_dssp EEESTTSSH-HHHHHHHHHHTTSGGCT-----TS---SSSEEEEEESSSSS-
T ss_pred EEEeccccc-chHHHHHHHHhhccccc-----cc---CCCceEEEeCCCCCC
Confidence 344455566 78888888876421110 01 356899999998885
No 183
>PRK07503 methionine gamma-lyase; Provisional
Probab=32.56 E-value=3.2e+02 Score=23.48 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhH
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDS 48 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS 48 (181)
..+.+++.+..+....-.+.+|+|-+.
T Consensus 66 ~~~~le~~lA~l~g~~~~i~~~sG~~A 92 (403)
T PRK07503 66 TLALLEQRMASLEGGEAAVALASGMGA 92 (403)
T ss_pred hHHHHHHHHHHHhCCCcEEEEcCHHHH
Confidence 345566666554222346788888653
No 184
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.52 E-value=22 Score=33.53 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.5
Q ss_pred eEEEecCchhHHHHHHHHHHHh
Q 030189 38 VAFSFNGGKDSTVLLHLLRAGY 59 (181)
Q Consensus 38 i~va~SGGKDS~vll~L~~~~~ 59 (181)
..+.+|++||++|+.|++..+.
T Consensus 322 ~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ceeeEeecCccHHHHhhhhccc
Confidence 4678999999999999999875
No 185
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=31.52 E-value=3.4e+02 Score=23.43 Aligned_cols=25 Identities=16% Similarity=-0.040 Sum_probs=15.1
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~ 110 (181)
..|+.+..+.+.+.+..|+.+..+.
T Consensus 107 p~Y~~t~~~~~~~~~~~g~~v~~v~ 131 (405)
T PRK08776 107 DAYGGSWRLFNALAKKGHFALITAD 131 (405)
T ss_pred CCchHHHHHHHHHHHhcCcEEEEEC
Confidence 4466666666666666666655554
No 186
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.35 E-value=2.2e+02 Score=21.25 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEc
Q 030189 45 GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 45 GKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~ 110 (181)
|-|..|++..+.+.. .++.++.+......++..++--+..+.++..+....
T Consensus 38 GgDgl~~AR~L~~~G---------------~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 38 GGDGLVAARHLANRG---------------YNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp HHHHHHHHHHHHHTT---------------CEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred hHHHHHHHHHHHHCC---------------CeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 468888888776653 356766666666666666666666778887776543
No 187
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=31.25 E-value=3.3e+02 Score=23.21 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhc
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKY 102 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~ 102 (181)
.+.+++.+..+....-.++++-|-+.+ +++..+.. . .=+++..+ ..|+.+..+.....+.+
T Consensus 52 ~~~Le~~la~l~g~~~al~~~SG~~Al---~~~l~~l~---p-----------Gd~Vi~~~--~~y~~t~~~~~~~~~~~ 112 (380)
T PRK06176 52 RFALEELIADLEGGVKGFAFASGLAGI---HAVFSLFQ---S-----------GDHVLLGD--DVYGGTFRLFDKVLVKN 112 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEECCHHHHH---HHHHHHcC---C-----------CCEEEEcC--CChhHHHHHHHHHHHhc
Confidence 445666665543234467777786533 33333321 1 11333322 34677777666666777
Q ss_pred CceEEEEc
Q 030189 103 VLQLDIIR 110 (181)
Q Consensus 103 ~l~~~~~~ 110 (181)
|+++..+.
T Consensus 113 gi~v~~vd 120 (380)
T PRK06176 113 GLSCTIID 120 (380)
T ss_pred CeEEEEcC
Confidence 77766554
No 188
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=30.93 E-value=2.4e+02 Score=22.96 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=36.1
Q ss_pred CCceEEEecCC--CCchHHHHHHHHHhhhcCceEEEEcccHHHH--HHHHHHhCCCcEEEEeeeCCCcc
Q 030189 75 FPIRTIYFESN--SAFPEINSFTYDTASKYVLQLDIIRSDFKSG--LEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 75 ~~~~~v~idtg--~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~--l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
..++++|+.-| ..-|.-.+.+.++.+.- ..++...++.+ -+++. +.+.+++++|.=..++.
T Consensus 163 ~g~~~~YlEagsga~~Pv~~e~v~~v~~~~---~LivGGGIrs~E~A~~~a-~agAD~IVtG~iiee~~ 227 (240)
T COG1646 163 LGMPVVYLEAGSGAGDPVPVEMVSRVLSDT---PLIVGGGIRSPEQAREMA-EAGADTIVTGTIIEEDP 227 (240)
T ss_pred hCCeEEEEEecCCCCCCcCHHHHHHhhccc---eEEEcCCcCCHHHHHHHH-HcCCCEEEECceeecCH
Confidence 35899999954 44455555555544332 34555544432 23333 34689999998776643
No 189
>PLN02509 cystathionine beta-lyase
Probab=30.23 E-value=3.9e+02 Score=23.73 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCCceEEEecCch
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGK 46 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGK 46 (181)
+.+++.+..+....-++++++|.
T Consensus 136 ~aLE~~lA~leg~e~ai~~~SG~ 158 (464)
T PLN02509 136 DALESLLAKLDKADRAFCFTSGM 158 (464)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHH
Confidence 33444444443344568889885
No 190
>PRK06767 methionine gamma-lyase; Provisional
Probab=30.16 E-value=3.5e+02 Score=23.06 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHhhhcCceEEEE
Q 030189 87 AFPEINSFTYDTASKYVLQLDII 109 (181)
Q Consensus 87 ~fpe~~~f~~~~~~~~~l~~~~~ 109 (181)
.|+.+..++....+.+|+++..+
T Consensus 109 ~y~~~~~~~~~~~~~~gi~~~~~ 131 (386)
T PRK06767 109 LYGCTYGFLEVLEEKFMITHSFC 131 (386)
T ss_pred cHHHHHHHHHHHHhhcCeEEEEe
Confidence 46666666666666666665444
No 191
>PRK05939 hypothetical protein; Provisional
Probab=29.92 E-value=3.6e+02 Score=23.21 Aligned_cols=71 Identities=8% Similarity=0.048 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhh
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASK 101 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~ 101 (181)
..+.+++.+..+....-.++||.|. .++..++..... . .+ .++. +...|+.+..+... .+.
T Consensus 48 ~~~~lE~~la~leg~~~~v~~ssG~--~Ai~~~l~all~---~----------Gd-~Vv~--~~~~y~~t~~~~~~-l~~ 108 (397)
T PRK05939 48 TTAALEAKITKMEGGVGTVCFATGM--AAIAAVFLTLLR---A----------GD-HLVS--SQFLFGNTNSLFGT-LRG 108 (397)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCHH--HHHHHHHHHHcC---C----------CC-EEEE--CCCccccHHHHHHH-HHh
Confidence 4455666655544345578888885 333333332221 1 11 2333 22457777766655 356
Q ss_pred cCceEEEEcc
Q 030189 102 YVLQLDIIRS 111 (181)
Q Consensus 102 ~~l~~~~~~~ 111 (181)
+|+++..+..
T Consensus 109 ~G~~v~~v~~ 118 (397)
T PRK05939 109 LGVEVTMVDA 118 (397)
T ss_pred cCCEEEEECC
Confidence 7777766653
No 192
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=29.82 E-value=3.4e+02 Score=22.89 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN 85 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg 85 (181)
..+.......+..+...+.+..|+ +++ .-|=-.++...-|+... ..++++|+..|
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~Pd-~Vl-v~GD~~~~la~alaA~~----------------~~ipv~HieaG 100 (346)
T PF02350_consen 46 QSMAKSTGLAIIELADVLEREKPD-AVL-VLGDRNEALAAALAAFY----------------LNIPVAHIEAG 100 (346)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHT-S-EEE-EETTSHHHHHHHHHHHH----------------TT-EEEEES--
T ss_pred chHHHHHHHHHHHHHHHHHhcCCC-EEE-EEcCCchHHHHHHHHHH----------------hCCCEEEecCC
Confidence 566777888888999999998765 333 44656666655555544 36899999999
No 193
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=29.74 E-value=39 Score=28.38 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=21.2
Q ss_pred CceEEEecCCCCchHHHHHHHHHhhhcCce-EEEE
Q 030189 76 PIRTIYFESNSAFPEINSFTYDTASKYVLQ-LDII 109 (181)
Q Consensus 76 ~~~~v~idtg~~fpe~~~f~~~~~~~~~l~-~~~~ 109 (181)
++-+|-+|. -+..|++++++++|++ +..+
T Consensus 177 ~iaVvDIDE-----Rli~fi~k~aee~g~~~ie~~ 206 (354)
T COG1568 177 RIAVVDIDE-----RLIKFIEKVAEELGYNNIEAF 206 (354)
T ss_pred eEEEEechH-----HHHHHHHHHHHHhCccchhhe
Confidence 466666654 4689999999999998 5443
No 194
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=29.71 E-value=2.8e+02 Score=21.93 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---CchH-HHHHH-H
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS---AFPE-INSFT-Y 96 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~---~fpe-~~~f~-~ 96 (181)
..+.+++++..- +.+.+++|||.-=..++..+.... ... .++.++++|.-. ..|+ .+.++ +
T Consensus 16 i~~~i~~~i~~~--~~~~lalsGGstp~~~y~~L~~~~--i~w----------~~v~~f~~DER~Vp~~~~~SN~~~~~~ 81 (233)
T TIGR01198 16 IATKLQTALAER--GQFSLALSGGRSPIALLEALAAQP--LDW----------SRIHLFLGDERYVPLDHADSNTGLARE 81 (233)
T ss_pred HHHHHHHHHHhc--CcEEEEECCCccHHHHHHHHhhCC--CCc----------ceEEEEEecccccCCCCccchHHHHHH
Confidence 334455656553 578999999987777777776431 111 357778888542 2333 23333 3
Q ss_pred HHhhhcCce---EEEEcc---cHHHHHHHH---HHhC-C------CcEEEEeeeCCC
Q 030189 97 DTASKYVLQ---LDIIRS---DFKSGLEAL---LNAK-P------IRAIFLGVRIGD 137 (181)
Q Consensus 97 ~~~~~~~l~---~~~~~~---~~k~~l~~~---~~~~-~------~~~~i~G~R~~e 137 (181)
.+-+..+++ ++.+.. +..+...+| +++. + .+++++|+-.|-
T Consensus 82 ~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~~~~p~fDl~lLGmG~DG 138 (233)
T TIGR01198 82 ALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQPIVFPVFDLLLLGMGPDG 138 (233)
T ss_pred HHhccCCCChhheeeCCCccCCHHHHHHHHHHHHHHhhcccCCCcccEEEECCcCCc
Confidence 444444443 222221 233333333 2222 2 499999986654
No 195
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.56 E-value=1.8e+02 Score=26.05 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=30.0
Q ss_pred CceEEEecCCCCc-hHHHHHHHHHhhhcCceEEEEcc
Q 030189 76 PIRTIYFESNSAF-PEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 76 ~~~~v~idtg~~f-pe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
++-+|-+||..++ +|+.+..+++.++|++++..++.
T Consensus 181 KPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 181 KPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh
Confidence 3456778888776 78999999999999999888775
No 196
>PLN02720 complex II
Probab=29.56 E-value=37 Score=24.91 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.4
Q ss_pred EEecccCCchHHHHHHHhc
Q 030189 158 RVNPILDWSYRLLINNKLF 176 (181)
Q Consensus 158 ~i~Pi~~Wt~~dVw~yi~~ 176 (181)
|-.||=-||+.||.+||..
T Consensus 33 rdkPLP~Ws~sDVeeFIaS 51 (140)
T PLN02720 33 RDKPLPPWSDSDVDEFIAS 51 (140)
T ss_pred CCCCCCCCchhhHHHHHhc
Confidence 4578888999999999975
No 197
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=29.52 E-value=1.1e+02 Score=23.28 Aligned_cols=62 Identities=5% Similarity=0.041 Sum_probs=33.8
Q ss_pred cCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH---HHHHhhhcCceEEEE
Q 030189 33 YSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF---TYDTASKYVLQLDII 109 (181)
Q Consensus 33 ~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f---~~~~~~~~~l~~~~~ 109 (181)
.+...++||.|-|+-..-++.++..- .++-+|.-+.|..=+.+.++ +++..++.|-++..-
T Consensus 26 lgik~~vVAS~tG~tA~k~lemveg~----------------lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 26 LGIKHIVVASSTGYTALKALEMVEGD----------------LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred cCcceEEEEecccHHHHHHHHhcccC----------------ceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 35678999999997655544443211 23555555566443434333 333344567776554
Q ss_pred c
Q 030189 110 R 110 (181)
Q Consensus 110 ~ 110 (181)
+
T Consensus 90 s 90 (186)
T COG1751 90 S 90 (186)
T ss_pred h
Confidence 3
No 198
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=29.43 E-value=3e+02 Score=22.02 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=50.8
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc-cHHH
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS-DFKS 115 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~-~~k~ 115 (181)
+|++-++|+.++.---.++.+......+ ...+++.+++......+..+-+++++++ |.++++... .+.+
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~~~~---------~~gv~~~~~e~~~~~~~~~~~i~~~~~~-g~dlIi~~g~~~~~ 70 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEK---------ALGVEVTYVENVPEGADAERVLRELAAQ-GYDLIFGTSFGFMD 70 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHHHHH---------hcCCeEEEEecCCchHhHHHHHHHHHHc-CCCEEEECchhhhH
Confidence 3667778998876555554444322111 0246777777654445566677777654 677766654 6888
Q ss_pred HHHHHHHhCCCc
Q 030189 116 GLEALLNAKPIR 127 (181)
Q Consensus 116 ~l~~~~~~~~~~ 127 (181)
.+.+..++.+..
T Consensus 71 ~~~~vA~~~p~~ 82 (258)
T cd06353 71 AALKVAKEYPDV 82 (258)
T ss_pred HHHHHHHHCCCC
Confidence 888888877633
No 199
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=29.37 E-value=3.5e+02 Score=22.88 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHH
Q 030189 12 DRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEI 91 (181)
Q Consensus 12 ~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~ 91 (181)
.....+.++++.+.+.+.+..-....+++.-++|-.+. .++...+. . +-.++.+.+| +|++
T Consensus 43 ~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~---~~~~~~l~--~------------~~~~~vi~~g-~f~~- 103 (378)
T PRK03080 43 QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAW---EMALWSLL--G------------ARRVDHLAWE-SFGS- 103 (378)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHH---HHHHHhcC--C------------CCcceEEEeC-HHHH-
Confidence 34566777778777777765411135665554553332 32222211 0 1123344455 6776
Q ss_pred HHHHHHHhhhcCc-eEEEEcc
Q 030189 92 NSFTYDTASKYVL-QLDIIRS 111 (181)
Q Consensus 92 ~~f~~~~~~~~~l-~~~~~~~ 111 (181)
.+.+.+++++|+ ++..+..
T Consensus 104 -~~~~~~~~~~g~~~v~~~~~ 123 (378)
T PRK03080 104 -KWATDVVKQLKLEDPRVLEA 123 (378)
T ss_pred -HHHHHHHhhcCCCCceEecc
Confidence 455555677888 7777653
No 200
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=29.36 E-value=3.7e+02 Score=23.16 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHHH
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTVL 51 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~vl 51 (181)
.+.+++.+..+....=++.+|+|.....+
T Consensus 72 ~~~le~~lA~l~g~~~al~~~sG~~Ai~~ 100 (403)
T PRK07810 72 VSMFEERLRLIEGAEACFATASGMSAVFT 100 (403)
T ss_pred HHHHHHHHHHHhCCCcEEEECChHHHHHH
Confidence 34555555444323457888889755443
No 201
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.32 E-value=2.4e+02 Score=21.01 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHH
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTV 50 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~v 50 (181)
+-..+++...++||++.++|-+ |+.|--.
T Consensus 52 EnQ~rvk~~aEk~g~enlvVvl-G~aeaE~ 80 (150)
T PF04723_consen 52 ENQQRVKDLAEKYGAENLVVVL-GAAEAEA 80 (150)
T ss_pred HHHHHHHHHHHhcCCccEEEEe-cCCChhh
Confidence 3456788889999988877766 6666443
No 202
>PRK07049 methionine gamma-lyase; Validated
Probab=29.30 E-value=3.8e+02 Score=23.31 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCCceEEEecCchhH
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGKDS 48 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGKDS 48 (181)
..+++.+..+....=++.++||.+.
T Consensus 86 ~~Le~~lA~leg~~~~iv~~sG~~A 110 (427)
T PRK07049 86 EIVEDRLAVYEGAESAALFSSGMSA 110 (427)
T ss_pred HHHHHHHHHHhCCCcEEEEccHHHH
Confidence 4455555443222336778899763
No 203
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=29.12 E-value=27 Score=28.33 Aligned_cols=12 Identities=0% Similarity=-0.272 Sum_probs=10.0
Q ss_pred HHHHHHHhcccc
Q 030189 168 RLLINNKLFGFI 179 (181)
Q Consensus 168 ~dVw~yi~~~~~ 179 (181)
.-||+||++|++
T Consensus 126 k~iw~YIke~nL 137 (240)
T KOG1946|consen 126 KKIWAYIKEHNL 137 (240)
T ss_pred HHHHHHHHHhcc
Confidence 457999999985
No 204
>PHA02517 putative transposase OrfB; Reviewed
Probab=28.87 E-value=1.1e+02 Score=24.58 Aligned_cols=63 Identities=8% Similarity=-0.005 Sum_probs=38.9
Q ss_pred ceEEE--ecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 37 EVAFS--FNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 37 ~i~va--~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
+.+++ ++...++..++..+.++.... +. ....+++.|.|-+|- -.-..+.++.+|+......+
T Consensus 138 r~i~~~~~~~~~~~~~~~~~l~~a~~~~--------~~--~~~~i~~sD~G~~y~--s~~~~~~~~~~gi~~~~~~~ 202 (277)
T PHA02517 138 RRIVGWRVSSSMDTDFVLDALEQALWAR--------GR--PGGLIHHSDKGSQYV--SLAYTQRLKEAGIRASTGSR 202 (277)
T ss_pred CeeeecccCCCCChHHHHHHHHHHHHhc--------CC--CcCcEeecccccccc--hHHHHHHHHHcCcccccCCC
Confidence 44444 455578888888887775321 10 123467889998883 23345567778888766554
No 205
>PRK06460 hypothetical protein; Provisional
Probab=28.70 E-value=3.7e+02 Score=22.87 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCCceEEEecCchh
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGKD 47 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGKD 47 (181)
+.+++.+..+....-.+.|++|.+
T Consensus 48 ~~L~~~lA~l~g~~~~v~~~sG~~ 71 (376)
T PRK06460 48 LELTKKIVELENAEMGVAFSSGMG 71 (376)
T ss_pred HHHHHHHHHHhCCCcEEEeCCHHH
Confidence 344444444322334677888853
No 206
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=28.67 E-value=2.2e+02 Score=24.15 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC----CchHHHHH
Q 030189 19 YNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS----AFPEINSF 94 (181)
Q Consensus 19 ~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~----~fpe~~~f 94 (181)
+.-+.|+..++-.....+.++++.++|--.+-+++=+.... ...++|-++..- ..+.+..-
T Consensus 165 v~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~---------------~~~~ViG~~v~~~~~~~~~qv~~L 229 (323)
T COG2515 165 VRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLG---------------PDVEVIGIDVSADPEKLKEQVLNL 229 (323)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhcc---------------CCCceEEEeecCCHHHHHHHHHHH
Confidence 44566666665433445788888877744444443332221 357888887432 23556666
Q ss_pred HHHHhhhcCce
Q 030189 95 TYDTASKYVLQ 105 (181)
Q Consensus 95 ~~~~~~~~~l~ 105 (181)
.+..++.+++.
T Consensus 230 ~~~~a~~~~~~ 240 (323)
T COG2515 230 AQATAELLGLG 240 (323)
T ss_pred HHHHHHHcCCC
Confidence 66767778776
No 207
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=28.44 E-value=2.9e+02 Score=22.12 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCC----CceEEEecCc-hhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC---CC---chH
Q 030189 22 AINVIQRTLALYSI----EEVAFSFNGG-KDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN---SA---FPE 90 (181)
Q Consensus 22 a~~~i~~~~~~~~~----~~i~va~SGG-KDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg---~~---fpe 90 (181)
..++++++++..+. ++.....||| |-=++++-++.. ..+++-+|.+ .. -.+
T Consensus 115 ~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~------------------~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 115 IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM------------------GPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc------------------CCCEEEEcCCCCCCCHHHHHH
Confidence 44555555555544 4667788998 777777766643 2466778844 33 246
Q ss_pred HHHHHHHHhhhcCceEEEEcccHH
Q 030189 91 INSFTYDTASKYVLQLDIIRSDFK 114 (181)
Q Consensus 91 ~~~f~~~~~~~~~l~~~~~~~~~k 114 (181)
+.+++.++.+..|..++.+.-++.
T Consensus 177 l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 177 LLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHH
Confidence 778888888888888888877643
No 208
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=28.30 E-value=86 Score=27.40 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhcCCC--ceEEEecCchh
Q 030189 17 TKYNNAINVIQRTLALYSIE--EVAFSFNGGKD 47 (181)
Q Consensus 17 ~~~~~a~~~i~~~~~~~~~~--~i~va~SGGKD 47 (181)
+.++++.=.++..++...+. -..+|||||.|
T Consensus 310 E~LEE~VL~vq~~L~~~~~~~~ipfCAFNGGsD 342 (408)
T PF06437_consen 310 EQLEEIVLTVQKTLEESPPGRRIPFCAFNGGSD 342 (408)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCceeeecCCcc
Confidence 34444444556666665442 46899999987
No 209
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=28.29 E-value=34 Score=22.29 Aligned_cols=12 Identities=8% Similarity=-0.164 Sum_probs=9.1
Q ss_pred HHHHHHHhcccc
Q 030189 168 RLLINNKLFGFI 179 (181)
Q Consensus 168 ~dVw~yi~~~~~ 179 (181)
.-||.||..|++
T Consensus 27 ~~lw~YIk~~~L 38 (76)
T PF02201_consen 27 KRLWQYIKENNL 38 (76)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhcC
Confidence 358999988864
No 210
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=28.19 E-value=78 Score=22.77 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=19.0
Q ss_pred CceEEEecCchhHHHHHHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAG 58 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~ 58 (181)
++++|++|..-|-..+-+.+.+.
T Consensus 77 ~~~lv~hn~~fD~~~l~~~~~~~ 99 (156)
T cd06130 77 GSLVVAHNASFDRSVLRAALEAY 99 (156)
T ss_pred CCEEEEeChHHhHHHHHHHHHHc
Confidence 47899999999988887777765
No 211
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=27.82 E-value=2.9e+02 Score=21.35 Aligned_cols=53 Identities=21% Similarity=0.053 Sum_probs=36.6
Q ss_pred CchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-hHHH---HHHHHHhhhcCceEEEEcc
Q 030189 44 GGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-PEIN---SFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 44 GGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-pe~~---~f~~~~~~~~~l~~~~~~~ 111 (181)
.|.||++.+..++... .++.++|.|..... .|-. +-++++++.++++++.-.-
T Consensus 7 CaPCs~~~~~~L~~~g---------------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y 63 (176)
T PF02677_consen 7 CAPCSTYPLERLREEG---------------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDY 63 (176)
T ss_pred CccccHHHHHHHHHCC---------------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCC
Confidence 4789999888877652 46888888876432 2322 3466778889999877543
No 212
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.54 E-value=4.5e+02 Score=23.48 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceE---EEEcccHHHHHHHHHHh
Q 030189 47 DSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQL---DIIRSDFKSGLEALLNA 123 (181)
Q Consensus 47 DS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~---~~~~~~~k~~l~~~~~~ 123 (181)
=||.||.++.+... .. +++|+ +|.+-+.-.+. -++++|++. ..+...--+-+.+.+++
T Consensus 106 KSTLLLQva~~lA~--------------~~-~vLYV-sGEES~~Qikl---RA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 106 KSTLLLQVAARLAK--------------RG-KVLYV-SGEESLQQIKL---RADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred HHHHHHHHHHHHHh--------------cC-cEEEE-eCCcCHHHHHH---HHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 39999999988742 23 88998 45555433332 245676543 22222222334444444
Q ss_pred CCCcEEE
Q 030189 124 KPIRAIF 130 (181)
Q Consensus 124 ~~~~~~i 130 (181)
...+++|
T Consensus 167 ~~p~lvV 173 (456)
T COG1066 167 EKPDLVV 173 (456)
T ss_pred cCCCEEE
Confidence 4444433
No 213
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.02 E-value=2.3e+02 Score=21.61 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=35.4
Q ss_pred CceEEEecCCC-CchHHHHHHHHHhhhcCceEEEEcccHH--------------------------------HHHHHHHH
Q 030189 76 PIRTIYFESNS-AFPEINSFTYDTASKYVLQLDIIRSDFK--------------------------------SGLEALLN 122 (181)
Q Consensus 76 ~~~~v~idtg~-~fpe~~~f~~~~~~~~~l~~~~~~~~~k--------------------------------~~l~~~~~ 122 (181)
++.-|-+ ||. --.|+++|++.++. ++++++.+|. +.|.-+.+
T Consensus 30 ki~hilc-tGNlcs~e~~dylk~l~~----dvhiVrGeFD~~~~yP~~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaR 104 (183)
T KOG3325|consen 30 KIQHILC-TGNLCSKESYDYLKTLSS----DVHIVRGEFDENLKYPENKVVTVGQFKIGLCHGHQVIPWGDPESLALLAR 104 (183)
T ss_pred ceeEEEE-eCCcchHHHHHHHHhhCC----CcEEEecccCccccCCccceEEeccEEEEeecCcEeecCCCHHHHHHHHH
Confidence 4444433 554 45789999988875 4555655332 24666666
Q ss_pred hCCCcEEEEeeeC
Q 030189 123 AKPIRAIFLGVRI 135 (181)
Q Consensus 123 ~~~~~~~i~G~R~ 135 (181)
+...+++++|+--
T Consensus 105 qldvDILl~G~Th 117 (183)
T KOG3325|consen 105 QLDVDILLTGHTH 117 (183)
T ss_pred hcCCcEEEeCCce
Confidence 7788999999743
No 214
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=26.65 E-value=3.4e+02 Score=21.87 Aligned_cols=58 Identities=5% Similarity=0.015 Sum_probs=34.4
Q ss_pred CceEEEecCCCCchHHHHHHHHHhhhcCceEEEEc-ccHH----HHHHHHHHhCCCcEEEEeeeC
Q 030189 76 PIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIR-SDFK----SGLEALLNAKPIRAIFLGVRI 135 (181)
Q Consensus 76 ~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~-~~~k----~~l~~~~~~~~~~~~i~G~R~ 135 (181)
..+++++=+ . -....+..+.+.++||+++.-.. +.|. +.+-+.+++.+.+++++|.-.
T Consensus 105 ~~~v~llG~-~-~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 105 GTPVFLVGG-K-PEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred CCeEEEECC-C-HHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 356666532 2 23455667778888888876443 3332 234455556677887777744
No 215
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=26.65 E-value=4.3e+02 Score=23.02 Aligned_cols=92 Identities=9% Similarity=0.105 Sum_probs=54.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH
Q 030189 11 DDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE 90 (181)
Q Consensus 11 ~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe 90 (181)
.++......++..+.++.++..-+.+.+.++-|| +.++=-.+..... +.=+|+-+..|. |
T Consensus 32 ~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsG---t~amEAav~sl~~--------------pgdkVLv~~nG~-F-- 91 (383)
T COG0075 32 RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSG---TLAMEAAVASLVE--------------PGDKVLVVVNGK-F-- 91 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCc---HHHHHHHHHhccC--------------CCCeEEEEeCCh-H--
Confidence 3466788888999999999876532333333332 2222222333221 224778888876 4
Q ss_pred HHHHHHHHhhhcCceEEEEcccHH-----HHHHHHHHh
Q 030189 91 INSFTYDTASKYVLQLDIIRSDFK-----SGLEALLNA 123 (181)
Q Consensus 91 ~~~f~~~~~~~~~l~~~~~~~~~k-----~~l~~~~~~ 123 (181)
=+-..+++++||.+++++..++. +.+++.+++
T Consensus 92 -G~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~ 128 (383)
T COG0075 92 -GERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDK 128 (383)
T ss_pred -HHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc
Confidence 22345567889999988886533 345555553
No 216
>PLN02242 methionine gamma-lyase
Probab=26.44 E-value=4.3e+02 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHH
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDST 49 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~ 49 (181)
-..+.+++.+..+....-++.++||....
T Consensus 76 Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai 104 (418)
T PLN02242 76 PTVLNLGRQMAALEGTEAAYCTASGMSAI 104 (418)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEccHHHHH
Confidence 34566676666543334556789996433
No 217
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.14 E-value=2.9e+02 Score=22.84 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHh
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGY 59 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~ 59 (181)
-+...+.+++.+.+..+++ .+-+++|+|=. |+++|.-+++.+
T Consensus 49 ~e~I~~~~~~i~~~l~~~~-ik~lVIACNTA--Sa~al~~LR~~~ 90 (269)
T COG0796 49 EEEIRERTLEIVDFLLERG-IKALVIACNTA--SAVALEDLREKF 90 (269)
T ss_pred HHHHHHHHHHHHHHHHHcC-CCEEEEecchH--HHHHHHHHHHhC
Confidence 3455667777788888887 68899999765 999999988764
No 218
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.94 E-value=2.1e+02 Score=19.16 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=27.5
Q ss_pred ceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 77 IRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 77 ~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..+|.+-|+.---.....+++.+++++++++..+.
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 35566666666667788899999999999999884
No 219
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=25.91 E-value=1.7e+02 Score=20.78 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=19.7
Q ss_pred HHhcCCCceEEEecCchhHHHHHHHHHHHh
Q 030189 30 LALYSIEEVAFSFNGGKDSTVLLHLLRAGY 59 (181)
Q Consensus 30 ~~~~~~~~i~va~SGGKDS~vll~L~~~~~ 59 (181)
++..+...|++|+|---++-+..+.+.+..
T Consensus 52 i~~~~i~EVIlA~~pt~EGe~Ta~yi~~~l 81 (112)
T cd01025 52 IAKGQVKEVILATNPTVEGEATALYIAKLL 81 (112)
T ss_pred HhcCCCcEEEEecCCCchHHHHHHHHHHHH
Confidence 333344667777777777777777666654
No 220
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=25.74 E-value=3.8e+02 Score=22.72 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=38.2
Q ss_pred ecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce---EEEEccc-HH---
Q 030189 42 FNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ---LDIIRSD-FK--- 114 (181)
Q Consensus 42 ~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~---~~~~~~~-~k--- 114 (181)
.+.|| ++.+++++..+.. ..-+++|+|+...+.. + ..+.+|++ +.+..|+ ..
T Consensus 64 ~GsGK-TtLal~~~~~~~~--------------~g~~~vyId~E~~~~~--~----~a~~lGvd~~~l~v~~p~~~eq~l 122 (325)
T cd00983 64 ESSGK-TTLALHAIAEAQK--------------LGGTVAFIDAEHALDP--V----YAKKLGVDLDNLLISQPDTGEQAL 122 (325)
T ss_pred CCCCH-HHHHHHHHHHHHH--------------cCCCEEEECccccHHH--H----HHHHcCCCHHHheecCCCCHHHHH
Confidence 45566 6778888777642 1247899998765542 2 34455654 3444553 22
Q ss_pred HHHHHHHHhCCCcEEE
Q 030189 115 SGLEALLNAKPIRAIF 130 (181)
Q Consensus 115 ~~l~~~~~~~~~~~~i 130 (181)
+-+..++++...+++|
T Consensus 123 ~i~~~li~s~~~~lIV 138 (325)
T cd00983 123 EIADSLVRSGAVDLIV 138 (325)
T ss_pred HHHHHHHhccCCCEEE
Confidence 2344455555555443
No 221
>PLN02530 histidine-tRNA ligase
Probab=25.62 E-value=4.8e+02 Score=23.22 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHhcC-CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceE
Q 030189 28 RTLALYS-IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQL 106 (181)
Q Consensus 28 ~~~~~~~-~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~ 106 (181)
+.++.|+ .+..+|+|+.| |... +.++..... .+. ...+.++-+++++. ....+..+...++.+ -|+.+
T Consensus 363 ~Li~~fgg~~~pAvGFa~g-~~~l-~~~l~~~g~-~p~------~~~~~dVlVi~~~~-~~~~~A~~ia~~LR~-~Gi~v 431 (487)
T PLN02530 363 RLLSTFGGEDTPACGFGFG-DAVI-VELLKEKGL-LPE------LPHQVDDVVFALDE-DLQGAAAGVASRLRE-KGRSV 431 (487)
T ss_pred HHHHHhCCCCCCeeEEEEh-HHHH-HHHHHhcCC-CCC------CCCCCcEEEEEcCh-HHHHHHHHHHHHHHH-CCCeE
Confidence 3345565 35678899888 4433 333332210 000 00011222333332 234556666666644 47776
Q ss_pred EEEc--ccHHHHHHHHHHhCCCcEEEEee
Q 030189 107 DIIR--SDFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 107 ~~~~--~~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
.+.. .++++.++.+-+..-..+++.|.
T Consensus 432 evd~~~~~l~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 432 DLVLEPKKLKWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred EEecCCCCHHHHHHHHHHCCCCEEEEEch
Confidence 5532 24677777666544466888996
No 222
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.60 E-value=3.8e+02 Score=22.09 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=42.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc---
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD--- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--- 112 (181)
-+++|-.||+ ++-+-.|+..... |....++.+|..|. +... .+++++|+++..+...
T Consensus 90 ~ri~vl~Sg~--gsnl~al~~~~~~----------~~~~~~i~~visn~----~~~~----~lA~~~gIp~~~~~~~~~~ 149 (286)
T PRK06027 90 KRVVILVSKE--DHCLGDLLWRWRS----------GELPVEIAAVISNH----DDLR----SLVERFGIPFHHVPVTKET 149 (286)
T ss_pred cEEEEEEcCC--CCCHHHHHHHHHc----------CCCCcEEEEEEEcC----hhHH----HHHHHhCCCEEEeccCccc
Confidence 4788888988 5555566654421 11113455555544 2333 3478889998775432
Q ss_pred ---HHHHHHHHHHhCCCcEEEE
Q 030189 113 ---FKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 113 ---~k~~l~~~~~~~~~~~~i~ 131 (181)
+...+.+.+++.+.+.+++
T Consensus 150 ~~~~~~~~~~~l~~~~~Dlivl 171 (286)
T PRK06027 150 KAEAEARLLELIDEYQPDLVVL 171 (286)
T ss_pred cchhHHHHHHHHHHhCCCEEEE
Confidence 2334556566655554443
No 223
>cd04860 AE_Prim_S AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its catalytic role in replication, DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. The function of the larger primase subunit is unclear. Included in this group are Pfu41 and Pfu46, these two proteins comprise the primase complex of the archaea Pyrococcus furiosus; Pfu41 and Pfu46 have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulat
Probab=25.42 E-value=1.3e+02 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.475 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHh-cCCCceEEEecCc
Q 030189 19 YNNAINVIQRTLAL-YSIEEVAFSFNGG 45 (181)
Q Consensus 19 ~~~a~~~i~~~~~~-~~~~~i~va~SGG 45 (181)
+..++..|..++.. ||-+.+.+.|||+
T Consensus 109 ~~~a~~~l~~~L~~dFGf~~i~~vfSG~ 136 (232)
T cd04860 109 AKEAVKILDDILREDFGFKHILWVFSGR 136 (232)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEEECC
Confidence 45666667777654 7777899999995
No 224
>PRK06234 methionine gamma-lyase; Provisional
Probab=25.41 E-value=4.3e+02 Score=22.63 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCCceEEEecCchhHH
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGKDST 49 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGKDS~ 49 (181)
..+++.+..+....-++.+++|....
T Consensus 67 ~~Le~~iA~~~g~~~~l~~~sG~~Ai 92 (400)
T PRK06234 67 TEVENKLALLEGGEAAVVAASGMGAI 92 (400)
T ss_pred HHHHHHHHHHhCCCcEEEEcCHHHHH
Confidence 44555544332233478899998643
No 225
>PF01896 DNA_primase_S: Eukaryotic and archaeal DNA primase small subunit; InterPro: IPR002755 DNA primase [] synthesizes the RNA primers for the Okazaki fragments in lagging strand DNA synthesis. DNA primase is a heterodimer of large (p60) and small (p50) subunits in eukaryotes. This family represents sequences of the small subunit and the DNA primase sequences of the Archaea []. No sequence similarity can be detected between the eukaryotic p50 and p60 subunits and the primases purified from bacteriophage and bacteria, IPR006295 from INTERPRO. ; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 1V33_A 1V34_A 2FAR_B 2FAQ_A 2FAO_B 1G71_A 2R9L_B 3PKY_B 2IRU_B 2IRY_B ....
Probab=25.37 E-value=1.6e+02 Score=21.03 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCc
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGG 45 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGG 45 (181)
++....++...+....+.+|...+.+-|||+
T Consensus 23 i~~~~~~~~~~~~~l~~~~g~~~~~~~~SG~ 53 (145)
T PF01896_consen 23 IEFVVEEAAKLLDFLLEDFGFRCIFVKFSGN 53 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--SEEEEE-SS
T ss_pred hHHHHHHHHHHHHhhhhhcCCcccEEEeCCC
Confidence 4444455555566667778766678899983
No 226
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=25.13 E-value=44 Score=22.28 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=13.0
Q ss_pred cCCchHHHHHHHhcc
Q 030189 163 LDWSYRLLINNKLFG 177 (181)
Q Consensus 163 ~~Wt~~dVw~yi~~~ 177 (181)
-.||..+||.+|...
T Consensus 11 q~Wtk~qVleWL~~~ 25 (78)
T cd08537 11 QFWTKTQVLEWISYH 25 (78)
T ss_pred ccccHHHHHHHHHHH
Confidence 579999999999864
No 227
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=24.97 E-value=4.4e+02 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCCceEEEecCchhHH
Q 030189 24 NVIQRTLALYSIEEVAFSFNGGKDST 49 (181)
Q Consensus 24 ~~i~~~~~~~~~~~i~va~SGGKDS~ 49 (181)
+.+++.+..+....-++.+|||....
T Consensus 54 ~~le~~lA~l~g~~~v~~~~gg~~Ai 79 (382)
T TIGR02080 54 DLLQQALAELEGGAGAVVTNTGMSAI 79 (382)
T ss_pred HHHHHHHHHHhCCCcEEEEcCHHHHH
Confidence 34444444432233467888885543
No 228
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=24.81 E-value=4.3e+02 Score=22.40 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.++.+.....+.+|+++..+..
T Consensus 101 ~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 101 SLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred CCcchHHHHHHHHHHHhCCEEEEECC
Confidence 34666666666666777777666543
No 229
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=24.41 E-value=4.2e+02 Score=22.12 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=20.9
Q ss_pred CceEEEecCCCCchH-HHHHHHHHhhhcCceEEEEcc
Q 030189 76 PIRTIYFESNSAFPE-INSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 76 ~~~~v~idtg~~fpe-~~~f~~~~~~~~~l~~~~~~~ 111 (181)
+++++ +..+.++-+ ...+..++. +.|+++..+..
T Consensus 152 ~~~V~-v~EsrP~~~G~~~~a~~L~-~~gI~vtlI~D 186 (303)
T TIGR00524 152 RIRVI-ACETRPRNQGSRLTAWELM-QDGIDVTLITD 186 (303)
T ss_pred ceEEE-ECCCCCccchHHHHHHHHH-HCCCCEEEECh
Confidence 46655 544455444 366777765 47898877754
No 230
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=23.81 E-value=4.5e+02 Score=22.23 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=37.5
Q ss_pred ecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce---EEEEcccH-HH--
Q 030189 42 FNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ---LDIIRSDF-KS-- 115 (181)
Q Consensus 42 ~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~---~~~~~~~~-k~-- 115 (181)
.+.|| ++.++|++..+.. ..-+++|+|+...+... ..+.+|++ +....|+. .+
T Consensus 64 ~GsGK-TtLaL~~~~~~~~--------------~g~~v~yId~E~~~~~~------~a~~lGvd~~~l~v~~p~~~eq~l 122 (321)
T TIGR02012 64 ESSGK-TTLALHAIAEAQK--------------AGGTAAFIDAEHALDPV------YARKLGVDIDNLLVSQPDTGEQAL 122 (321)
T ss_pred CCCCH-HHHHHHHHHHHHH--------------cCCcEEEEcccchhHHH------HHHHcCCCHHHeEEecCCCHHHHH
Confidence 45566 6677787777642 13578899987655431 24556665 45555542 22
Q ss_pred -HHHHHHHhCCCcEEE
Q 030189 116 -GLEALLNAKPIRAIF 130 (181)
Q Consensus 116 -~l~~~~~~~~~~~~i 130 (181)
-+..++++...+++|
T Consensus 123 ~~~~~li~~~~~~lIV 138 (321)
T TIGR02012 123 EIAETLVRSGAVDIIV 138 (321)
T ss_pred HHHHHHhhccCCcEEE
Confidence 334444444455433
No 231
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.61 E-value=2.9e+02 Score=20.38 Aligned_cols=8 Identities=38% Similarity=0.704 Sum_probs=7.3
Q ss_pred EEEecCch
Q 030189 39 AFSFNGGK 46 (181)
Q Consensus 39 ~va~SGGK 46 (181)
.|+||||-
T Consensus 64 gVt~SGGE 71 (147)
T TIGR02826 64 CVLFLGGE 71 (147)
T ss_pred EEEEechh
Confidence 79999997
No 232
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=23.54 E-value=4.7e+02 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhH
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDS 48 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS 48 (181)
.+.+++.+..+....-++.+++|...
T Consensus 61 ~~~le~~lA~l~g~~~av~~~sG~~A 86 (391)
T TIGR01328 61 VSNLEGRIAFLEGTEAAVATSSGMGA 86 (391)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHH
Confidence 34555555544323447888888643
No 233
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=23.50 E-value=4.3e+02 Score=23.92 Aligned_cols=57 Identities=5% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCceEEEecCCCCchHHHHHHHHHhhhcCce--EEEEccc-------HHH-----HHHHHHHhCCCcEEEE
Q 030189 75 FPIRTIYFESNSAFPEINSFTYDTASKYVLQ--LDIIRSD-------FKS-----GLEALLNAKPIRAIFL 131 (181)
Q Consensus 75 ~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~--~~~~~~~-------~k~-----~l~~~~~~~~~~~~i~ 131 (181)
.++.+||+=-|.-..|+.+|++++.+.=.++ ++++... +.. .+.+|+...|.+++++
T Consensus 189 ~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv 259 (502)
T PRK13343 189 SDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIV 259 (502)
T ss_pred CCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3577899999999999999999987654333 3343321 111 3667777777776654
No 234
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.28 E-value=3.3e+02 Score=20.43 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=33.2
Q ss_pred CceEEEecCCCCchHHHHHHHHHhhhc-CceEEE-EcccHH----HHHHHHHHhCCCcEEEEeeeCC
Q 030189 76 PIRTIYFESNSAFPEINSFTYDTASKY-VLQLDI-IRSDFK----SGLEALLNAKPIRAIFLGVRIG 136 (181)
Q Consensus 76 ~~~~v~idtg~~fpe~~~f~~~~~~~~-~l~~~~-~~~~~k----~~l~~~~~~~~~~~~i~G~R~~ 136 (181)
..+++++ |-.-....+..+.+.+.| |+++.- ..+.+. +.+-+.+++.+.+++++|+-.-
T Consensus 46 ~~~v~ll--G~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 46 GLRVFLL--GAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAP 110 (171)
T ss_pred CCeEEEE--CCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 3555555 222234555566666655 777765 344432 2345556666778888887554
No 235
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=23.17 E-value=2.7e+02 Score=20.48 Aligned_cols=40 Identities=25% Similarity=0.480 Sum_probs=22.2
Q ss_pred EEEecCchhH------HHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 39 AFSFNGGKDS------TVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 39 ~va~SGGKDS------~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
.|+|||| |= ..+..+++.+.. . ..+..+.+.||..+.+..
T Consensus 66 gVt~sGG-EPllq~~~~~l~~ll~~~k~---~----------~~~~~~~~~tG~~~~~~~ 111 (154)
T TIGR02491 66 GLTLSGG-DPLYPRNVEELIELVKKIKA---E----------FPEKDIWLWTGYTWEEIL 111 (154)
T ss_pred eEEEeCh-hhCCCCCHHHHHHHHHHHHH---h----------CCCCCEEEeeCccHHHHh
Confidence 6888888 22 345555655421 0 123445556887776543
No 236
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=23.03 E-value=4.4e+02 Score=21.81 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 34 SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 34 ~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..+.++++++.. +|| +..++.+.. . | ..+++ |++...+.-+-.++..++. +.|+++..+..
T Consensus 108 ~~g~~ILTh~~S--~tv-~~~l~~A~~---~------g---k~~~V-~v~EsrP~~qG~~la~eL~-~~GI~vtlI~D 168 (275)
T PRK08335 108 DDGDVIITHSFS--SAV-LEILKTAKR---K------G---KRFKV-ILTESAPDYEGLALANELE-FLGIEFEVITD 168 (275)
T ss_pred CCCCEEEEECCc--HHH-HHHHHHHHH---c------C---CceEE-EEecCCCchhHHHHHHHHH-HCCCCEEEEec
Confidence 335577777654 454 444555532 1 1 24555 5665566555566666664 46899877654
No 237
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=22.77 E-value=2.4e+02 Score=19.83 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=43.5
Q ss_pred CceEEE--ecCch-hHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc
Q 030189 36 EEVAFS--FNGGK-DSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 36 ~~i~va--~SGGK-DS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
+.++++ ++... |...+..+++.... ...-.+-+.+|..++++-+.+-+.++++++++..+..+
T Consensus 43 gElvlttg~~~~~~~~~~~~~~i~~L~~--------------~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 43 GELVLTTGYALRDDDEEELREFIRELAE--------------KGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred CeEEEECCcccCCCCHHHHHHHHHHHHH--------------CCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCC
Confidence 556665 23334 34557777777642 24667778888767777777788899999999888764
No 238
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=22.51 E-value=3.3e+02 Score=20.17 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=43.7
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--chH---HHHHHHHHhhhcCceEEEEcc
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--FPE---INSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--fpe---~~~f~~~~~~~~~l~~~~~~~ 111 (181)
.+-|+|.|-+.|-|+-.++.-+.. .... +++-++.. +|. +.+.+++..++.|-++.+..
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--------------~g~~-~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~- 65 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--------------FGME-VVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD- 65 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--------------TTSE-EEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES-
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--------------cCCE-EEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe-
Confidence 356888887656676666655432 3456 45555554 554 66666777777788877663
Q ss_pred cHHHHHHHHHHhCCCcEEEEee
Q 030189 112 DFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 112 ~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
++ .+.++ +.+++.+-.
T Consensus 66 ~~----~e~l~--~aDvvy~~~ 81 (158)
T PF00185_consen 66 DI----EEALK--GADVVYTDR 81 (158)
T ss_dssp SH----HHHHT--T-SEEEEES
T ss_pred CH----HHhcC--CCCEEEEcC
Confidence 33 34443 355655544
No 239
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=22.41 E-value=1.7e+02 Score=22.98 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCc-eEEEecCchhHHH
Q 030189 25 VIQRTLALYSIEE-VAFSFNGGKDSTV 50 (181)
Q Consensus 25 ~i~~~~~~~~~~~-i~va~SGGKDS~v 50 (181)
.|+....+++..+ +.|+||+|.|=+-
T Consensus 57 ~i~~y~~~w~~~~vvLiGYSFGADvlP 83 (192)
T PF06057_consen 57 IIRHYRARWGRKRVVLIGYSFGADVLP 83 (192)
T ss_pred HHHHHHHHhCCceEEEEeecCCchhHH
Confidence 3444455555444 6788999988444
No 240
>PHA00439 exonuclease
Probab=22.06 E-value=4.7e+02 Score=21.83 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=16.3
Q ss_pred HHHHHHHHh---cCCCceEEEecCc
Q 030189 24 NVIQRTLAL---YSIEEVAFSFNGG 45 (181)
Q Consensus 24 ~~i~~~~~~---~~~~~i~va~SGG 45 (181)
..|.+.+++ +.++.++|+|.+|
T Consensus 50 ~~L~kl~~~~k~~~p~~i~vaFD~~ 74 (286)
T PHA00439 50 DSIKSYKTRKKAWKDAPIVLAFTDS 74 (286)
T ss_pred HHHHHHHHhhccCCCCeEEEEECCC
Confidence 445555666 7888999999954
No 241
>PRK08064 cystathionine beta-lyase; Provisional
Probab=21.86 E-value=5.1e+02 Score=22.13 Aligned_cols=26 Identities=4% Similarity=0.174 Sum_probs=17.3
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.++....+..+.+|+++..+..
T Consensus 100 ~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 100 DVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred CccchHHHHHHHHHHHcCCEEEEECC
Confidence 35676776666666777777766553
No 242
>PRK07740 hypothetical protein; Provisional
Probab=21.85 E-value=1e+02 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=32.7
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH-----HHHHhhhcCceEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF-----TYDTASKYVLQLD 107 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f-----~~~~~~~~~l~~~ 107 (181)
+.+.|+++.+-|=..+-+.+.+... .++..-++||-..+..+... ++.+++.||+++.
T Consensus 141 ~~~lVahna~fD~~fL~~~~~~~~~--------------~~~~~~~iDt~~l~r~l~~~~~~~sL~~l~~~~gi~~~ 203 (244)
T PRK07740 141 AGVLVAHHAGHDKAFLRHALWRTYR--------------QPFTHRLIDTMFLTKLLAHERDFPTLDDALAYYGIPIP 203 (244)
T ss_pred CCEEEEeCHHHHHHHHHHHHHHhcC--------------CCcCCCeechHHHHHHHcCCCCCCCHHHHHHHCCcCCC
Confidence 5789999998887766655444321 12333466664322222111 5666777777654
No 243
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.85 E-value=5.2e+02 Score=22.27 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=50.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhcCCCceEE--EecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC
Q 030189 10 SDDRRLKTKYNNAINVIQRTLALYSIEEVAF--SFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA 87 (181)
Q Consensus 10 ~~~~~l~~~~~~a~~~i~~~~~~~~~~~i~v--a~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~ 87 (181)
|.+....+-.+++++.|...++.+.++-++. ||+-|-=+..+..++..+... ..+++|..-. .+
T Consensus 56 CGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~-------------~~IP~vtaM~-~E 121 (349)
T PF07355_consen 56 CGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEK-------------LGIPVVTAMY-EE 121 (349)
T ss_pred ECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHh-------------hCCCEEEEec-cc
Confidence 5556667777788888888889988764433 499999999999998876421 3467665443 33
Q ss_pred chHHHHHHHH
Q 030189 88 FPEINSFTYD 97 (181)
Q Consensus 88 fpe~~~f~~~ 97 (181)
.|.+..|.+.
T Consensus 122 Npgv~~yk~~ 131 (349)
T PF07355_consen 122 NPGVEMYKKD 131 (349)
T ss_pred ChhHHHHhhc
Confidence 4665554443
No 244
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.79 E-value=4.8e+02 Score=21.83 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-ceEEEec------CchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC
Q 030189 14 RLKTKYNNAINVIQRTLALYSIE-EVAFSFN------GGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS 86 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~-~i~va~S------GGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~ 86 (181)
.|+....-.+++|+.+-+..|++ .+.+=.| +|-|..-.+.++..+.. ..+..+.+..|.
T Consensus 194 slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~--------------~Gvd~iev~~g~ 259 (338)
T cd04733 194 SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEE--------------AGVDLVELSGGT 259 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHH--------------cCCCEEEecCCC
Confidence 47777777777777776666644 5677677 56665555565555421 123444443331
Q ss_pred C--------------chH--HHHHHHHHhhhcCceEEEEccc-HHHHHHHHHHhCCCcEEEEee
Q 030189 87 A--------------FPE--INSFTYDTASKYVLQLDIIRSD-FKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 87 ~--------------fpe--~~~f~~~~~~~~~l~~~~~~~~-~k~~l~~~~~~~~~~~~i~G~ 133 (181)
. .++ ..++.+++.+..++++.....- -.+-..+++++...+++.+|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR 323 (338)
T cd04733 260 YESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLAR 323 (338)
T ss_pred CCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeCh
Confidence 0 011 2355667777778877665431 234567777765577776664
No 245
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.67 E-value=5.7e+02 Score=22.64 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=56.0
Q ss_pred HhcCC-CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-hHHHHHHHHHhhhcCceEEE
Q 030189 31 ALYSI-EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-PEINSFTYDTASKYVLQLDI 108 (181)
Q Consensus 31 ~~~~~-~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-pe~~~f~~~~~~~~~l~~~~ 108 (181)
+.|+. ...+++||.|.|-+.++-....... ..+.+.+++-+.-|... ++..+..+.+++ .|+.+.+
T Consensus 300 ~~~gG~~~pavGFaiGveRl~~~l~~~~~~~-----------~~~~~~~v~v~~~~~~~~~~a~~la~~LR~-~g~~~~~ 367 (429)
T COG0124 300 EEFGGKPTPAVGFAIGVERLILALEEEGKED-----------PVETRVDVYVVPLGEDAEPEALKLAQKLRA-AGISVEV 367 (429)
T ss_pred HHhCCCCCCceeEehHHHHHHHHHHHcCCCC-----------CcCCCCCEEEEEcCchhHHHHHHHHHHHHH-cCCcEEE
Confidence 34443 4579999999998775443322100 00123344333344443 667777777755 3666544
Q ss_pred E--cccHHHHHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 109 I--RSDFKSGLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 109 ~--~~~~k~~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
. ...++..++.+-+..-.-++|+|.+--+..
T Consensus 368 ~~~~r~~k~q~k~A~~~g~~~~viiGe~E~~~g 400 (429)
T COG0124 368 DYSGRKLKKQFKYADKLGARFAVILGEDELANG 400 (429)
T ss_pred EeccccHHHHHHHHHHCCCCEEEEEcchHHhcC
Confidence 3 234777777776654467899998765543
No 246
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=21.59 E-value=48 Score=21.65 Aligned_cols=10 Identities=10% Similarity=-0.267 Sum_probs=7.8
Q ss_pred HHHHHhcccc
Q 030189 170 LINNKLFGFI 179 (181)
Q Consensus 170 Vw~yi~~~~~ 179 (181)
+|.||+.|++
T Consensus 29 lw~YIk~n~L 38 (77)
T smart00151 29 LWEYIKEHNL 38 (77)
T ss_pred HHHHHHHhcc
Confidence 6999987764
No 247
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.57 E-value=5.1e+02 Score=22.02 Aligned_cols=26 Identities=0% Similarity=0.033 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.+..++..+.+.+|+++..+..
T Consensus 93 ~~y~~~~~~~~~~~~~~G~~v~~vd~ 118 (378)
T TIGR01329 93 DLYGGTDRLLTQVVPRSGVVVVHVDT 118 (378)
T ss_pred CCchHHHHHHHHHHHHcCcEEEEeCC
Confidence 35677777777777777777766654
No 248
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=21.52 E-value=2.8e+02 Score=20.68 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=11.8
Q ss_pred HHhCCCcEEEEeeeCCC
Q 030189 121 LNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 121 ~~~~~~~~~i~G~R~~e 137 (181)
++..+.+++.+|.-..|
T Consensus 89 Lkk~~~k~vmVGnGaND 105 (152)
T COG4087 89 LKKRYEKVVMVGNGAND 105 (152)
T ss_pred hcCCCcEEEEecCCcch
Confidence 33345778888987777
No 249
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=21.50 E-value=4.7e+02 Score=21.63 Aligned_cols=56 Identities=5% Similarity=0.093 Sum_probs=36.7
Q ss_pred CceEEEecCCCCchHHHHHHHHHhhhcCce--EEEEcc----cHH--------HHHHHHHHhCCCcEEEE
Q 030189 76 PIRTIYFESNSAFPEINSFTYDTASKYVLQ--LDIIRS----DFK--------SGLEALLNAKPIRAIFL 131 (181)
Q Consensus 76 ~~~~v~idtg~~fpe~~~f~~~~~~~~~l~--~~~~~~----~~k--------~~l~~~~~~~~~~~~i~ 131 (181)
++.+||+--|.-..|+.+|++++.+.=.++ +.++.. ... =.+.+++...|.+++++
T Consensus 97 ~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl 166 (274)
T cd01132 97 KVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALII 166 (274)
T ss_pred CeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 578899999999999999999987543222 333332 111 13566777777776655
No 250
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=21.31 E-value=5.3e+02 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHH
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTV 50 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~v 50 (181)
.+.+++.+..+....-++.++||.....
T Consensus 55 ~~~Le~~lA~leg~e~ivvt~gg~~Ai~ 82 (388)
T PRK08861 55 RGLLEQTLSELESGKGAVVTNCGTSALN 82 (388)
T ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHH
Confidence 3445555544433345677788754443
No 251
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=21.17 E-value=4.4e+02 Score=23.24 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHhhhcCceEEEEcccH----HHHHHHHHHhCCCcEEEEeeeCC
Q 030189 87 AFPEINSFTYDTASKYVLQLDIIRSDF----KSGLEALLNAKPIRAIFLGVRIG 136 (181)
Q Consensus 87 ~fpe~~~f~~~~~~~~~l~~~~~~~~~----k~~l~~~~~~~~~~~~i~G~R~~ 136 (181)
...|..+|..++.++|. ++.+.-++ .++...+.+..|.++.++|.-.-
T Consensus 261 ~~~e~i~~~~~Lv~~Yp--ivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLf 312 (423)
T COG0148 261 TSEELIEYYLELVKKYP--IVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLF 312 (423)
T ss_pred CHHHHHHHHHHHHHhCC--EEEEcCCCCchhHHHHHHHHHhhCCeEEEECCcce
Confidence 34589999999999997 44444333 45677777777778888886443
No 252
>PF11966 SSURE: Fibronectin-binding repeat; InterPro: IPR021021 Streptococcal surface repeat domain - SSURE - is a protein fragment found to bind to extracellular matrix protein fibronectin but not to collagen or submaxillary mucin in Streptococci. Anti-SSURE antibodies recognised the corresponding protein on the surface of streptococcal cells. The full-length proteins are thus fibronectin-binding surface adhesins []. The proteins are further characterised by having an N-terminal motif resembling [YF]SIRKxxxGxxS[VIA] IPR005877 from INTERPRO and a C-terminal LPXTG motif-containing region which is a characteristic of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall (see IPR019931 from INTERPRO).
Probab=21.14 E-value=93 Score=20.62 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=16.7
Q ss_pred EEEecC---chhHHHHHHHHHHH
Q 030189 39 AFSFNG---GKDSTVLLHLLRAG 58 (181)
Q Consensus 39 ~va~SG---GKDS~vll~L~~~~ 58 (181)
-|+.+| ||+...||++++.-
T Consensus 24 qV~L~Gnt~Gk~~q~LLDqlraN 46 (81)
T PF11966_consen 24 QVDLNGNTAGKQGQALLDQLRAN 46 (81)
T ss_pred EEecCCcccCcchHHHHHHHHhC
Confidence 467777 99999999999864
No 253
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=21.05 E-value=3.2e+02 Score=19.48 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCC-CceEEEecCch-------hHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec-CCCCchHHHH
Q 030189 23 INVIQRTLALYSI-EEVAFSFNGGK-------DSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE-SNSAFPEINS 93 (181)
Q Consensus 23 ~~~i~~~~~~~~~-~~i~va~SGGK-------DS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id-tg~~fpe~~~ 93 (181)
.++++.+++.|.. ..-.+-+|||+ ++.++...+.... .+...+.++ ....--|...
T Consensus 20 ~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~g---------------v~~~~I~~e~~s~~T~ena~ 84 (150)
T cd06259 20 AERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELG---------------VPAEAILLEDRSTNTYENAR 84 (150)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcC---------------CCHHHeeecCCCCCHHHHHH
Confidence 3444444443322 13356678885 6667666665543 123334444 3333345556
Q ss_pred HHHHHhhhcCc-eEEEEccc
Q 030189 94 FTYDTASKYVL-QLDIIRSD 112 (181)
Q Consensus 94 f~~~~~~~~~l-~~~~~~~~ 112 (181)
|..++.+..++ ++..+..+
T Consensus 85 ~~~~~~~~~~~~~i~lVTs~ 104 (150)
T cd06259 85 FSAELLRERGIRSVLLVTSA 104 (150)
T ss_pred HHHHHHHhcCCCeEEEECCH
Confidence 66666666664 34555543
No 254
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.87 E-value=5e+02 Score=21.67 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=34.7
Q ss_pred CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 34 SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 34 ~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..+.++++++.. ++|+.- ++.+.. . + .++++ ++..+.+.-+-..+..++. +.|+++..+.-
T Consensus 119 ~~g~~ILT~~~S--~tv~~~-l~~A~~---~------~---k~~~V-~v~EsrP~~~G~~~a~~L~-~~GI~vtlI~D 179 (310)
T PRK08535 119 RDGDVIMTHCNS--SAALSV-IKTAHE---Q------G---KDIEV-IATETRPRNQGHITAKELA-EYGIPVTLIVD 179 (310)
T ss_pred CCCCEEEEeCCc--HHHHHH-HHHHHH---C------C---CeEEE-EEecCCchhhHHHHHHHHH-HCCCCEEEEeh
Confidence 335677887644 565554 455532 1 1 34665 4555555544466777764 46888876654
No 255
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=20.86 E-value=4.1e+02 Score=20.65 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCceEEEecCchhHHHHHHHHHHH
Q 030189 25 VIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAG 58 (181)
Q Consensus 25 ~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~ 58 (181)
.++.+++. | ..++.-.+|+.+.--++.|+++.
T Consensus 84 v~~~aL~~-g-~~~ind~~~~~~~~~~~~l~a~~ 115 (210)
T PF00809_consen 84 VAEAALKA-G-ADIINDISGFEDDPEMLPLAAEY 115 (210)
T ss_dssp HHHHHHHH-T-SSEEEETTTTSSSTTHHHHHHHH
T ss_pred HHHHHHHc-C-cceEEecccccccchhhhhhhcC
Confidence 55566666 5 57899999998777777888775
No 256
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=20.73 E-value=3.7e+02 Score=20.05 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHH
Q 030189 22 AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAG 58 (181)
Q Consensus 22 a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~ 58 (181)
..+.++..+..- +.+.+++|||.-=..++..+...
T Consensus 8 i~~~i~~~~~~~--~~~~i~lsgGsTp~~~y~~L~~~ 42 (169)
T cd00458 8 IEDKXEKLLEEK--DDMVIGLGTGSTPAYFYKLLGEK 42 (169)
T ss_pred HHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHhh
Confidence 334455555443 57899999997666666666544
No 257
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=20.54 E-value=1.2e+02 Score=25.96 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=38.1
Q ss_pred CCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccH-HHHHHHHHHhCCCcEEEEe
Q 030189 75 FPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDF-KSGLEALLNAKPIRAIFLG 132 (181)
Q Consensus 75 ~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~-k~~l~~~~~~~~~~~~i~G 132 (181)
.+++.||+..|-.++|-.+ .+++.+.+|+++.-..--. -.|++.+.+-+...+++.|
T Consensus 70 lkIP~vfLTNGGg~~E~~r-A~~lS~~Lgv~Vs~dqviqSHsP~r~l~~~~~k~vLv~G 127 (389)
T KOG1618|consen 70 LKIPFVFLTNGGGILESSR-AQELSALLGVEVSADQVIQSHSPFRLLVEYHYKRVLVVG 127 (389)
T ss_pred eeccEEEEeCCCCcchhhH-HHHHHHhhCCccCHHHHHhhcChHHHHhhhhhceEEEec
Confidence 5799999999988888776 6777888887753221100 1255555544456778888
No 258
>PLN02360 probable 6-phosphogluconolactonase
Probab=20.48 E-value=4e+02 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=18.8
Q ss_pred chHHHHHHHH-HHHHHHHHHHhcCCCceEEEecCch
Q 030189 12 DRRLKTKYNN-AINVIQRTLALYSIEEVAFSFNGGK 46 (181)
Q Consensus 12 ~~~l~~~~~~-a~~~i~~~~~~~~~~~i~va~SGGK 46 (181)
...+.....+ ..+.++.+++.- +.+.+++|||.
T Consensus 19 ~~el~~~~a~~i~~~~~~a~~~~--~~~~lalsGGS 52 (268)
T PLN02360 19 LDELSTDLAEYIAELSEASVKER--GVFAIALSGGS 52 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CcEEEEECCCC
Confidence 3444444443 223444444442 57999999995
No 259
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=20.33 E-value=1.8e+02 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=25.8
Q ss_pred EEecCCCCchHHHHHHHHHhhhcCceEEEEc
Q 030189 80 IYFESNSAFPEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 80 v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~ 110 (181)
|.+|. .+|+.+..+++++.+.+|+.+..+.
T Consensus 129 Vwld~-v~F~~ll~WL~~L~~q~GV~V~~ld 158 (178)
T PRK09731 129 VWIEP-VVFNDLLNWLNALDEKYALRVTQID 158 (178)
T ss_pred EEECC-CCHHHHHHHHHHHHHhcCceEEEEe
Confidence 56665 7899999999999999999987765
No 260
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=20.33 E-value=3.5e+02 Score=19.74 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH--HHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE--INS 93 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe--~~~ 93 (181)
...+.+++..++..++..|. ++.+ +.| .--.++..|+... .+..||.+......+ ..+
T Consensus 48 ~~Fl~~sL~~L~~~L~~~g~-~L~v-~~g-~~~~~l~~l~~~~-----------------~~~~V~~~~~~~~~~~~rd~ 107 (165)
T PF00875_consen 48 RRFLLESLADLQESLRKLGI-PLLV-LRG-DPEEVLPELAKEY-----------------GATAVYFNEEYTPYERRRDE 107 (165)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--EEE-EES-SHHHHHHHHHHHH-----------------TESEEEEE---SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCc-ceEE-Eec-chHHHHHHHHHhc-----------------CcCeeEeccccCHHHHHHHH
Confidence 34566888889999988863 4433 333 3344444555543 478899998876544 333
Q ss_pred HHHHHhhhcCceEEEEcc
Q 030189 94 FTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~ 111 (181)
-+.+.++..|+.++.+..
T Consensus 108 ~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 108 RVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp HHHHHHHHTTSEEEEE--
T ss_pred HHHHHHHhcceEEEEECC
Confidence 455566677899988764
No 261
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.19 E-value=1.6e+02 Score=24.96 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHH
Q 030189 12 DRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEI 91 (181)
Q Consensus 12 ~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~ 91 (181)
...+...++.+++.++......+..-.+|-.||||=|+ +. + ..++- +++....|+.+
T Consensus 172 Ak~~~~~id~~i~~~k~~a~~~~~t~m~il~ngGkisa---------fG--p----------~SRfg--~ihd~~G~~pv 228 (320)
T COG4607 172 AKELLADIDASIAAAKEKAAGKGKTALVILVNGGKISA---------FG--P----------SSRFG--WIHDDLGFTPV 228 (320)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeEEEEecCCeeee---------ec--C----------CCcce--eeecccCCCcc
Confidence 34556667778888887766665456889999998553 21 1 12344 44455566777
Q ss_pred HHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCCCcEEEEeee
Q 030189 92 NSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 92 ~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
.+.++. ...|-++ + .+|+.+.+.+.+++=.|
T Consensus 229 d~~~~~--s~HGq~V---S-------fEyI~e~NPD~lfViDR 259 (320)
T COG4607 229 DENIKN--SNHGQPV---S-------FEYIKEKNPDWLFVIDR 259 (320)
T ss_pred cccccc--cCCCCee---c-------HHHHHhhCCCEEEEEeC
Confidence 776663 2234333 1 57777777777666555
No 262
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.06 E-value=1.7e+02 Score=18.19 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=18.9
Q ss_pred chHHHHHHHHHhhhcCceEEEEccc
Q 030189 88 FPEINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 88 fpe~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
|-++.++++.-++.+|+.++.+.+.
T Consensus 1 f~~~~~~L~yka~~~G~~v~~v~~~ 25 (69)
T PF07282_consen 1 FGQFRQRLEYKAEEYGIQVVEVDEA 25 (69)
T ss_pred CHHHHHHHHHHHHHhCCEEEEECCC
Confidence 3456777888888889988888763
No 263
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.02 E-value=4e+02 Score=20.27 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=29.5
Q ss_pred ceEEEecCCCCchHHHHHHHHHhhhc-CceEEEEcccHH----HHHHHHHHhCCCcEEEEeeeC
Q 030189 77 IRTIYFESNSAFPEINSFTYDTASKY-VLQLDIIRSDFK----SGLEALLNAKPIRAIFLGVRI 135 (181)
Q Consensus 77 ~~~v~idtg~~fpe~~~f~~~~~~~~-~l~~~~~~~~~k----~~l~~~~~~~~~~~~i~G~R~ 135 (181)
.+++++ .+. -....+..+.+.++| |+++.-..+.|. +.+-+.+++.+.+++++|.-.
T Consensus 49 ~~vfll-G~~-~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 49 LPIFLY-GGK-PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred CeEEEE-CCC-HHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 455554 222 233455566666666 566655444332 234444555566666666643
Done!