Query 030189
Match_columns 181
No_of_seqs 128 out of 1255
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fwk_A FMN adenylyltransferase 100.0 2.1E-38 7.3E-43 260.6 17.0 167 14-180 34-215 (308)
2 2wsi_A FAD synthetase; transfe 100.0 3E-34 1E-38 237.6 17.4 169 12-180 23-212 (306)
3 1zun_A Sulfate adenylyltransfe 100.0 1.1E-30 3.9E-35 217.8 18.2 157 11-180 24-223 (325)
4 2oq2_A Phosphoadenosine phosph 100.0 1E-30 3.5E-35 212.0 15.0 144 21-180 29-205 (261)
5 2o8v_A Phosphoadenosine phosph 100.0 1.8E-29 6.2E-34 203.7 15.4 146 15-180 24-200 (252)
6 1sur_A PAPS reductase; assimil 100.0 1.3E-28 4.6E-33 193.8 14.4 146 15-180 23-199 (215)
7 2goy_A Adenosine phosphosulfat 100.0 1.2E-27 4E-32 195.3 14.7 146 15-180 33-214 (275)
8 1wy5_A TILS, hypothetical UPF0 99.7 2.2E-16 7.4E-21 130.9 12.1 129 36-180 25-187 (317)
9 2dpl_A GMP synthetase, GMP syn 99.7 1.1E-15 3.7E-20 126.4 16.0 147 16-179 4-178 (308)
10 3a2k_A TRNA(Ile)-lysidine synt 99.6 2.7E-15 9.1E-20 130.3 12.9 144 26-181 5-186 (464)
11 2ywb_A GMP synthase [glutamine 99.6 1.3E-14 4.5E-19 127.1 14.2 147 14-179 191-371 (503)
12 3bl5_A Queuosine biosynthesis 99.5 1.6E-14 5.6E-19 112.7 9.5 128 36-179 4-175 (219)
13 1kor_A Argininosuccinate synth 99.5 1.8E-14 6.1E-19 122.9 8.0 123 36-180 1-163 (400)
14 1ni5_A Putative cell cycle pro 99.5 1.8E-13 6.2E-18 117.8 12.8 135 36-181 14-175 (433)
15 3k32_A Uncharacterized protein 99.5 1.8E-14 6.3E-19 112.2 5.6 121 36-177 7-153 (203)
16 2pg3_A Queuosine biosynthesis 99.5 1.3E-13 4.4E-18 109.1 9.0 128 35-179 2-178 (232)
17 3tqi_A GMP synthase [glutamine 99.5 3.4E-13 1.1E-17 118.8 12.0 148 15-179 213-395 (527)
18 1xng_A NH(3)-dependent NAD(+) 99.5 7.8E-13 2.7E-17 107.0 13.1 143 16-179 6-173 (268)
19 2e18_A NH(3)-dependent NAD(+) 99.4 1.2E-12 4.1E-17 105.2 11.1 138 16-179 7-170 (257)
20 3p52_A NH(3)-dependent NAD(+) 99.3 1.2E-11 4.2E-16 99.2 13.0 144 15-179 6-174 (249)
21 1gpm_A GMP synthetase, XMP ami 99.3 9.1E-12 3.1E-16 109.6 13.1 149 14-179 209-393 (525)
22 2hma_A Probable tRNA (5-methyl 99.3 4.6E-12 1.6E-16 107.3 9.7 129 36-179 10-191 (376)
23 2c5s_A THII, probable thiamine 99.3 1.3E-11 4.6E-16 105.6 9.7 125 36-179 188-343 (413)
24 3fiu_A NH(3)-dependent NAD(+) 99.3 3.3E-11 1.1E-15 96.7 11.0 143 15-179 9-183 (249)
25 2der_A TRNA-specific 2-thiouri 99.3 1.4E-11 4.8E-16 104.4 9.2 129 36-179 18-199 (380)
26 3uow_A GMP synthetase; structu 99.2 3.1E-10 1E-14 100.5 13.6 147 15-179 238-424 (556)
27 2nz2_A Argininosuccinate synth 99.1 1.6E-10 5.4E-15 98.9 6.5 122 36-180 6-171 (413)
28 1k92_A Argininosuccinate synth 99.0 2.6E-10 8.7E-15 98.4 6.5 124 36-180 11-181 (455)
29 2vxo_A GMP synthase [glutamine 99.0 2.5E-09 8.4E-14 96.9 13.1 149 14-179 222-432 (697)
30 3n05_A NH(3)-dependent NAD(+) 98.8 2.7E-08 9.2E-13 88.6 12.4 145 13-177 304-472 (590)
31 1kqp_A NAD+ synthase, NH(3)-de 98.7 3E-07 1E-11 74.3 12.2 150 14-178 17-197 (271)
32 1vl2_A Argininosuccinate synth 98.6 3.9E-08 1.3E-12 84.1 6.6 124 36-179 15-179 (421)
33 1wxi_A NH(3)-dependent NAD(+) 98.6 5.8E-07 2E-11 72.8 12.8 153 13-178 17-200 (275)
34 1vbk_A Hypothetical protein PH 98.6 5.5E-08 1.9E-12 80.1 5.6 117 36-177 180-305 (307)
35 3rjz_A N-type ATP pyrophosphat 98.5 9.1E-08 3.1E-12 76.0 5.9 119 37-175 6-136 (237)
36 3dpi_A NAD+ synthetase; ssgcid 98.3 2.6E-06 9E-11 69.4 9.9 147 15-178 26-209 (285)
37 3q4g_A NH(3)-dependent NAD(+) 98.3 3.2E-06 1.1E-10 68.7 9.0 152 13-178 18-209 (279)
38 3sdb_A Glutamine-dependent NAD 98.1 1.1E-05 3.8E-10 72.9 9.2 87 17-111 343-429 (680)
39 1jgt_A Beta-lactam synthetase; 97.7 0.00016 5.4E-09 63.3 9.7 107 16-139 220-354 (513)
40 1ct9_A Asparagine synthetase B 97.6 0.00037 1.3E-08 61.5 10.9 101 36-139 227-354 (553)
41 3ilv_A Glutamine-dependent NAD 97.6 0.00038 1.3E-08 62.4 10.1 86 23-110 291-404 (634)
42 1q15_A CARA; CMPR, (2S,5S)-5-c 97.4 0.00029 9.9E-09 61.5 6.8 106 16-139 217-351 (503)
43 4f4h_A Glutamine dependent NAD 97.3 0.0065 2.2E-07 53.7 14.3 132 25-177 290-452 (565)
44 3tnj_A Universal stress protei 95.9 0.15 5.3E-06 35.7 11.1 91 36-137 7-121 (150)
45 3fdx_A Putative filament prote 94.9 0.27 9.2E-06 34.1 9.5 89 36-135 2-116 (143)
46 1jmv_A USPA, universal stress 94.9 0.38 1.3E-05 33.2 10.2 88 36-134 3-111 (141)
47 2z08_A Universal stress protei 94.6 0.7 2.4E-05 31.8 12.1 91 36-137 3-111 (137)
48 3loq_A Universal stress protei 94.5 0.72 2.5E-05 36.2 12.0 91 36-137 171-263 (294)
49 1tq8_A Hypothetical protein RV 92.6 1.8 6.1E-05 31.0 10.5 91 36-138 18-132 (163)
50 3mt0_A Uncharacterized protein 92.5 1.4 4.7E-05 34.5 10.5 92 36-138 135-250 (290)
51 3fg9_A Protein of universal st 92.4 2 6.7E-05 30.1 10.6 92 36-138 16-132 (156)
52 3s3t_A Nucleotide-binding prot 92.2 1.9 6.6E-05 29.6 11.7 91 36-137 6-120 (146)
53 3olq_A Universal stress protei 90.6 3.6 0.00012 32.3 11.2 94 36-138 157-279 (319)
54 3dlo_A Universal stress protei 90.5 3.4 0.00012 29.2 11.5 91 36-137 25-129 (155)
55 3idf_A USP-like protein; unive 90.3 3 0.0001 28.3 11.3 89 36-137 2-113 (138)
56 3hgm_A Universal stress protei 89.9 3.4 0.00012 28.3 10.6 92 36-138 3-123 (147)
57 1mjh_A Protein (ATP-binding do 89.1 3.5 0.00012 28.9 9.2 91 36-137 6-132 (162)
58 3mt0_A Uncharacterized protein 88.3 5.8 0.0002 30.8 10.8 91 36-138 8-102 (290)
59 2dum_A Hypothetical protein PH 87.3 6 0.00021 27.9 10.5 92 36-138 6-130 (170)
60 3cis_A Uncharacterized protein 84.2 13 0.00045 29.0 11.6 89 36-137 172-279 (309)
61 1q77_A Hypothetical protein AQ 77.7 13 0.00046 24.9 9.3 89 36-136 5-120 (138)
62 3olq_A Universal stress protei 77.2 21 0.00072 27.7 9.8 92 36-138 8-124 (319)
63 3ab8_A Putative uncharacterize 76.1 23 0.00078 26.8 9.7 83 36-133 155-242 (268)
64 1pk1_B Sex COMB on midleg CG94 70.6 1.6 5.5E-05 28.8 1.3 21 160-180 12-32 (89)
65 2d8c_A Phosphatidylcholine:cer 63.9 3.5 0.00012 27.6 1.9 21 158-178 13-33 (97)
66 3loq_A Universal stress protei 62.1 24 0.00083 27.1 7.0 90 36-138 23-136 (294)
67 2gm3_A Unknown protein; AT3G01 61.3 39 0.0013 23.6 10.1 94 36-137 6-136 (175)
68 2bkx_A Glucosamine-6-phosphate 56.5 48 0.0017 25.0 7.7 107 20-136 14-136 (242)
69 1kw4_A Polyhomeotic; SAM domai 54.3 6.7 0.00023 25.6 2.0 18 160-177 12-29 (89)
70 3ab8_A Putative uncharacterize 53.1 69 0.0024 24.0 9.4 88 37-137 2-121 (268)
71 2ri0_A Glucosamine-6-phosphate 52.5 71 0.0024 23.9 10.0 102 20-136 15-129 (234)
72 1fs5_A Glucosamine-6-phosphate 47.8 92 0.0031 23.8 8.4 108 21-136 15-141 (266)
73 3bs5_A Protein aveugle; sterIl 44.2 8.5 0.00029 26.0 1.3 21 157-177 18-38 (106)
74 4ab4_A Xenobiotic reductase B; 43.4 1.3E+02 0.0046 24.5 10.7 103 15-134 199-310 (362)
75 3o1l_A Formyltetrahydrofolate 43.3 1.2E+02 0.0043 24.1 11.3 77 36-132 106-188 (302)
76 1v85_A Similar to ring finger 41.7 8.9 0.00031 25.0 1.1 23 156-178 11-33 (91)
77 2q5c_A NTRC family transcripti 40.8 86 0.0029 23.1 6.6 54 77-133 5-59 (196)
78 3u7q_B Nitrogenase molybdenum- 40.4 1.8E+02 0.0061 25.0 12.5 101 15-134 344-447 (523)
79 2e8o_A SAM domain and HD domai 40.1 11 0.00038 25.1 1.4 21 158-178 23-43 (103)
80 3gka_A N-ethylmaleimide reduct 39.5 1.5E+02 0.0053 24.1 9.9 103 15-134 207-318 (361)
81 1uv7_A General secretion pathw 38.3 37 0.0013 22.9 3.9 30 80-110 52-81 (110)
82 3n0v_A Formyltetrahydrofolate 36.6 1.5E+02 0.0053 23.3 10.5 76 36-131 91-172 (286)
83 3cis_A Uncharacterized protein 35.5 1.5E+02 0.0051 22.7 11.2 89 36-137 20-134 (309)
84 3pdi_A Nitrogenase MOFE cofact 33.7 2.2E+02 0.0074 24.1 10.6 97 15-134 312-410 (483)
85 3ico_A 6PGL, 6-phosphogluconol 33.6 1.7E+02 0.0057 22.7 7.6 115 11-137 31-172 (268)
86 2jvf_A De novo protein M7; tet 32.9 92 0.0032 19.6 5.7 40 20-59 32-73 (96)
87 1vp8_A Hypothetical protein AF 32.2 49 0.0017 25.0 3.9 23 31-53 40-62 (201)
88 1icp_A OPR1, 12-oxophytodienoa 32.0 2.1E+02 0.0071 23.3 9.2 105 15-133 213-331 (376)
89 3oc6_A 6-phosphogluconolactona 31.8 1.7E+02 0.0058 22.3 7.4 115 11-137 15-154 (248)
90 3p9x_A Phosphoribosylglycinami 31.2 1.7E+02 0.0057 22.0 10.0 78 36-131 3-87 (211)
91 2l69_A Rossmann 2X3 fold prote 31.0 1.2E+02 0.004 20.2 5.4 42 89-130 36-80 (134)
92 2zr9_A Protein RECA, recombina 31.0 2.1E+02 0.007 23.0 8.6 68 43-131 71-145 (349)
93 3tx2_A Probable 6-phosphogluco 30.5 1.8E+02 0.0062 22.2 7.4 115 11-137 15-156 (251)
94 3ndn_A O-succinylhomoserine su 28.9 2.3E+02 0.008 23.0 9.2 25 87-111 129-153 (414)
95 3lhi_A Putative 6-phosphogluco 28.9 1.1E+02 0.0037 23.2 5.6 113 11-137 10-139 (232)
96 3hgj_A Chromate reductase; TIM 28.6 2.3E+02 0.0078 22.7 12.3 105 15-133 198-319 (349)
97 1v31_A Hypothetical protein RA 28.0 22 0.00074 23.4 1.2 12 168-179 34-45 (93)
98 1uhr_A SWI/SNF related, matrix 27.8 22 0.00075 23.3 1.2 12 168-179 34-45 (93)
99 3qhx_A Cystathionine gamma-syn 27.3 2.4E+02 0.0081 22.5 10.4 26 86-111 113-138 (392)
100 2f46_A Hypothetical protein; s 27.3 1.3E+02 0.0044 20.8 5.4 22 35-56 102-123 (156)
101 3nwp_A 6-phosphogluconolactona 27.0 1.5E+02 0.0051 22.4 6.1 113 11-137 13-141 (233)
102 3hvy_A Cystathionine beta-lyas 26.8 2.6E+02 0.0088 23.1 8.0 20 115-134 200-221 (427)
103 4ds3_A Phosphoribosylglycinami 26.7 2E+02 0.0069 21.5 9.0 77 37-131 9-92 (209)
104 3ri6_A O-acetylhomoserine sulf 26.6 2.7E+02 0.0091 22.9 9.0 26 86-111 129-154 (430)
105 3nrb_A Formyltetrahydrofolate 26.1 1.1E+02 0.0038 24.1 5.3 77 36-131 89-171 (287)
106 1v32_A AT5G08430, hypothetical 26.0 21 0.00071 24.0 0.8 11 169-179 43-53 (101)
107 1p2x_A RNG2 protein, RAS GTPas 25.9 54 0.0018 23.6 3.1 72 18-108 12-89 (159)
108 3i16_A Aluminum resistance pro 25.9 2.8E+02 0.0095 22.9 8.2 18 116-133 201-220 (427)
109 3kks_A Integrase, IN; beta-str 25.8 1.2E+02 0.0041 20.1 5.0 57 39-111 30-86 (152)
110 3av3_A Phosphoribosylglycinami 25.8 2.1E+02 0.007 21.3 9.1 78 36-131 4-88 (212)
111 2fq6_A Cystathionine beta-lyas 25.1 2.8E+02 0.0095 22.6 8.8 26 86-111 129-154 (415)
112 1cxq_A Avian sarcoma virus int 24.7 94 0.0032 21.3 4.3 53 45-111 48-100 (162)
113 2l5y_A Stromal interaction mol 23.9 19 0.00065 26.0 0.3 19 158-176 74-92 (150)
114 1c0m_A Protein (integrase); HI 23.8 1.2E+02 0.0043 22.4 5.1 58 39-111 42-99 (238)
115 1qgu_B Protein (nitrogenase mo 23.6 3.4E+02 0.012 23.1 12.1 102 14-134 339-443 (519)
116 2xry_A Deoxyribodipyrimidine p 23.5 3.3E+02 0.011 22.8 10.6 73 18-111 89-161 (482)
117 3lou_A Formyltetrahydrofolate 23.3 2.7E+02 0.0094 21.9 10.4 76 36-131 96-177 (292)
118 1ycy_A Conserved hypothetical 23.0 66 0.0023 19.7 2.6 20 25-44 6-25 (71)
119 1p5s_A RAS GTPase-activating-l 22.5 69 0.0024 24.1 3.3 48 46-108 83-133 (203)
120 3lc0_A Histidyl-tRNA synthetas 22.3 2.7E+02 0.0094 23.3 7.4 92 31-134 325-421 (456)
121 3obi_A Formyltetrahydrofolate 22.2 1.3E+02 0.0044 23.8 5.0 76 37-131 91-172 (288)
122 2k60_A Protein (stromal intera 22.2 21 0.00073 25.8 0.3 19 158-176 74-92 (150)
123 3e15_A Glucose-6-phosphate 1-d 21.7 3.1E+02 0.011 21.9 8.2 92 36-137 60-170 (312)
124 3e2i_A Thymidine kinase; Zn-bi 21.5 80 0.0028 24.1 3.5 38 76-114 101-141 (219)
125 3cmw_A Protein RECA, recombina 21.3 3E+02 0.01 27.5 8.2 67 43-130 1441-1514(1706)
126 3kru_A NADH:flavin oxidoreduct 21.2 3.2E+02 0.011 21.9 11.5 104 15-133 189-308 (343)
127 3fkq_A NTRC-like two-domain pr 20.5 1.4E+02 0.0046 24.1 4.9 61 75-137 20-80 (373)
128 1qgn_A Protein (cystathionine 20.2 3.7E+02 0.013 22.2 11.3 26 86-111 161-186 (445)
No 1
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=100.00 E-value=2.1e-38 Score=260.61 Aligned_cols=167 Identities=25% Similarity=0.430 Sum_probs=138.2
Q ss_pred HHHHHHHHHHH-HHHHHHHhcCC--CceEEEecCchhHHHHHHHHHHHhhhhc---CCCCCCC----CCCCCCceEEEec
Q 030189 14 RLKTKYNNAIN-VIQRTLALYSI--EEVAFSFNGGKDSTVLLHLLRAGYFLHK---GEQSCSN----GSLTFPIRTIYFE 83 (181)
Q Consensus 14 ~l~~~~~~a~~-~i~~~~~~~~~--~~i~va~SGGKDS~vll~L~~~~~~~~~---~~~~~~~----~~~~~~~~~v~id 83 (181)
.++.+++.|++ +|++++++|++ +++++||||||||+|||||+++++..+. ......+ +.+..++++||+|
T Consensus 34 ~~q~qir~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiD 113 (308)
T 3fwk_A 34 QTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFID 113 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEe
Confidence 37888889995 99999999986 7899999999999999999999853110 0000000 0011469999999
Q ss_pred CCCCchHHHHHHHHHhhhcCceEEEEccc----HHHHHHHHHHhC-CCcEEEEeeeCCCccccCCcccCCCCCCCCCeeE
Q 030189 84 SNSAFPEINSFTYDTASKYVLQLDIIRSD----FKSGLEALLNAK-PIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMR 158 (181)
Q Consensus 84 tg~~fpe~~~f~~~~~~~~~l~~~~~~~~----~k~~l~~~~~~~-~~~~~i~G~R~~es~~~~~~~~~~~~~~~~~~~~ 158 (181)
||.+||||++|+++++++||++++++.|+ +++++.++++.. +.++||+|.|++|+.|+++..++.++++|++++|
T Consensus 114 TG~~FpET~ef~d~~~~~ygL~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~e~~Ra~l~~~e~~d~~w~~~iK 193 (308)
T 3fwk_A 114 HDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYR 193 (308)
T ss_dssp CTTCCHHHHHHHHHHHHHTTEEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTTSTTCTTCCSEEECCTTSCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecCCcccCCCCeeeccCCCCCCeEE
Confidence 99999999999999999999999998875 888999999876 5899999999999888889899888878999999
Q ss_pred EecccCCchHHHHHHHhccccC
Q 030189 159 VNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 159 i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
++||++||+.|||.||..|++-
T Consensus 194 VnPL~dWT~~DVW~YI~~~~LP 215 (308)
T 3fwk_A 194 LQPLLHWNLANIWSFLLYSNEP 215 (308)
T ss_dssp ECTTTTCCHHHHHHHHHHHTCC
T ss_pred EechhhCCHHHHHHHHHHcCCC
Confidence 9999999999999999998763
No 2
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=237.63 Aligned_cols=169 Identities=23% Similarity=0.443 Sum_probs=134.3
Q ss_pred chHHHHHHHHHHH-----HHHHHHHhcCC--CceEEEecCchhHHHHHHHHHHHhhhhc-----CCCCCCC--CCCCCCc
Q 030189 12 DRRLKTKYNNAIN-----VIQRTLALYSI--EEVAFSFNGGKDSTVLLHLLRAGYFLHK-----GEQSCSN--GSLTFPI 77 (181)
Q Consensus 12 ~~~l~~~~~~a~~-----~i~~~~~~~~~--~~i~va~SGGKDS~vll~L~~~~~~~~~-----~~~~~~~--~~~~~~~ 77 (181)
...|...+++++. +|+++++.|++ ++++|||||||||+|||||+.++..... ..+...+ .....++
T Consensus 23 ~~~l~~~~~e~i~~~~~~il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 102 (306)
T 2wsi_A 23 KSQIIASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRL 102 (306)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCe
Confidence 3356666666554 55557788874 6899999999999999999998743210 0000000 0011468
Q ss_pred eEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc------HHHHHHHHHHhC-CCcEEEEeeeCCCccccCCcccCCCC
Q 030189 78 RTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD------FKSGLEALLNAK-PIRAIFLGVRIGDPTAVGQEQFSPSS 150 (181)
Q Consensus 78 ~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~------~k~~l~~~~~~~-~~~~~i~G~R~~es~~~~~~~~~~~~ 150 (181)
++||+|||.+|||+++|+++++++||++++++.++ +++.+.++++.. ..+++++|+|++|+.++++..+.+++
T Consensus 103 ~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~~r~l~~~~~~d 182 (306)
T 2wsi_A 103 PTVFIDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFGEALKPIQRTD 182 (306)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSSCCCCCSEEECC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecccccccccCceeccC
Confidence 99999999999999999999999999999998764 788888988874 57899999999999888888888878
Q ss_pred CCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 151 PGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 151 ~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
++||++++++||++||+.|||.||..|++-
T Consensus 183 ~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lp 212 (306)
T 2wsi_A 183 SNWPDFMRLQPLLHWDLTNIWSFLLYSNEP 212 (306)
T ss_dssp TTSCSCEEECTTTTCCHHHHHHHHHHHCCC
T ss_pred CCCCCcEEEeChHHCCHHHHHHHHHHcCCC
Confidence 889999999999999999999999998763
No 3
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.97 E-value=1.1e-30 Score=217.76 Aligned_cols=157 Identities=22% Similarity=0.323 Sum_probs=128.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH
Q 030189 11 DDRRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE 90 (181)
Q Consensus 11 ~~~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe 90 (181)
+...|+.++++|++.|+++++.| ++++|+|||||||+|||||+.++... ...+++++|+|||..|||
T Consensus 24 ~~~~L~~le~~a~~ilr~~~~~~--~~ivVa~SGGkDS~vLL~Ll~~~~~~-----------~~~~i~vv~vDtg~~~~e 90 (325)
T 1zun_A 24 KLTHLKQLEAESIHIIREVAAEF--DNPVMLYSIGKDSAVMLHLARKAFFP-----------GKLPFPVMHVDTRWKFQE 90 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHC--SSEEEECCSSHHHHHHHHHHHHHHTT-----------SCCSSCEEEECCSCCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC--CCEEEEEcChHHHHHHHHHHHHhccc-----------cCCCEEEEEEECCCCCHH
Confidence 45789999999999999999998 58999999999999999999998531 014689999999999999
Q ss_pred HHHHHHHHhhhcCceEEEEcccH---------------------HHHHHHHHHhCCCcEEEEeeeCCCcccc-CCcccCC
Q 030189 91 INSFTYDTASKYVLQLDIIRSDF---------------------KSGLEALLNAKPIRAIFLGVRIGDPTAV-GQEQFSP 148 (181)
Q Consensus 91 ~~~f~~~~~~~~~l~~~~~~~~~---------------------k~~l~~~~~~~~~~~~i~G~R~~es~~~-~~~~~~~ 148 (181)
+++|+++++++||++++++.++. .++|++++++.+.++|++|+|+||+..| .+..++.
T Consensus 91 t~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~Ra~~~~~~~ 170 (325)
T 1zun_A 91 MYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSF 170 (325)
T ss_dssp HHHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhhhhcccceec
Confidence 99999999999999999887531 0368888888889999999999997543 4444431
Q ss_pred C--CCCCC-------------------CeeEEecccCCchHHHHHHHhccccC
Q 030189 149 S--SPGWP-------------------PFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 149 ~--~~~~~-------------------~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
. ..+|+ +.++++||++||+.|||.|+..+++-
T Consensus 171 r~~~~~~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp 223 (325)
T 1zun_A 171 RDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIP 223 (325)
T ss_dssp ECTTCCBCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCC
T ss_pred cccccccCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCC
Confidence 0 01111 36789999999999999999998874
No 4
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-30 Score=212.04 Aligned_cols=144 Identities=12% Similarity=0.213 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhh
Q 030189 21 NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTAS 100 (181)
Q Consensus 21 ~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~ 100 (181)
+++++|+++++.|+ +++|||||||||+|||||+.++... ..+++++|+|||.+|||+++|++++++
T Consensus 29 ~~~~~l~~a~~~~~--~v~va~SGGkDS~vLL~ll~~~~~~------------~~~i~vv~iDtg~~~~et~~~v~~~~~ 94 (261)
T 2oq2_A 29 TPQEIIAWSIVTFP--HLFQTTAFGLTGLVTIDMLSKLSEK------------YYMPELLFIDTLHHFPQTLTLKNEIEK 94 (261)
T ss_dssp SHHHHHHHHHHHCS--SEEEECCCCHHHHHHHHHHHHHTTT------------SCCCEEEEECCSCBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHHHhCcc------------CCCeeEEEecCCCCCHHHHHHHHHHHH
Confidence 57999999999994 7999999999999999999988521 136899999999999999999999999
Q ss_pred hcCc----eEEEEcccH----H------------------------HHHHHHHHhCCCcEEEEeeeCCCcc-ccCCcccC
Q 030189 101 KYVL----QLDIIRSDF----K------------------------SGLEALLNAKPIRAIFLGVRIGDPT-AVGQEQFS 147 (181)
Q Consensus 101 ~~~l----~~~~~~~~~----k------------------------~~l~~~~~~~~~~~~i~G~R~~es~-~~~~~~~~ 147 (181)
+||+ +++++.++. . +||++++++.+.++|++|+|++|+. |.++..++
T Consensus 95 ~~gl~~~~~l~v~~~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~~R~~~~~~~ 174 (261)
T 2oq2_A 95 KYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIE 174 (261)
T ss_dssp HHTGGGTCCCEEECSTTCSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCGGGGGCCSEE
T ss_pred HhCCCCCCCeEEEecCCccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchHHHccCCcee
Confidence 9999 999888641 0 3678888888999999999999975 44555554
Q ss_pred CCCCCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 148 PSSPGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 148 ~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.. .+++.++++||++||++|||.|+..|++-
T Consensus 175 ~~--~~~~~~ki~PL~~wt~~dV~~Yi~~~~lp 205 (261)
T 2oq2_A 175 ID--ELNGILKINPLINWTFEQVKQYIDANNVP 205 (261)
T ss_dssp EE--TTTTEEEECTTTTCCHHHHHHHHHHHTCC
T ss_pred ec--CCCCeEEEechHhCCHHHHHHHHHHcCCC
Confidence 32 24578899999999999999999999874
No 5
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.96 E-value=1.8e-29 Score=203.66 Aligned_cols=146 Identities=20% Similarity=0.238 Sum_probs=122.3
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 15 LKTKYN--NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 15 l~~~~~--~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
+....+ .+.++|+++++.|+ ++++|||||||||+|+|||+.++. .++.++|+|||..|||++
T Consensus 24 ~~~~~~~~~~~~~l~~a~~~~~-~~v~va~SGG~DS~vLL~ll~~~~---------------~~v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 24 TNAELEKLDAEGRVAWALDNLP-GEYVLSSSFGIQAAVSLHLVNQIR---------------PDIPVILTDTGYLFPETY 87 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTSC-SCEEEECCCSTTHHHHHHHHHHHS---------------TTCEEEECCCSCBCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHcC-CCEEEEeCCCHHHHHHHHHHHHhC---------------CCCeEEEecCCCCCHHHH
Confidence 444444 78999999999996 789999999999999999999874 368999999999999999
Q ss_pred HHHHHHhhhcCceEEEEcccH--H--------------------------HHHHHHHHhCCCcEEEEeeeCCCcc-ccCC
Q 030189 93 SFTYDTASKYVLQLDIIRSDF--K--------------------------SGLEALLNAKPIRAIFLGVRIGDPT-AVGQ 143 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~~--k--------------------------~~l~~~~~~~~~~~~i~G~R~~es~-~~~~ 143 (181)
+|+++++++||++++++.++. . +||++++++.+..+|++|+|++|+. +..+
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~R~~l 167 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANL 167 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCSSCHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTCCTTS
T ss_pred HHHHHHHHHhCCceEEEcCCCCHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccccccccC
Confidence 999999999999999987641 0 2577788887778999999999964 5455
Q ss_pred cccCCCCCCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 144 EQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
..++.. .+..+++||++|+.+|||.|+..|++-
T Consensus 168 ~~~~~~----~~~~~i~PL~~wt~~dV~~y~~~~~lp 200 (252)
T 2o8v_A 168 PVLAIQ----RGVFKVLPIIDWDNRTIYQYLQKHGLK 200 (252)
T ss_dssp CSEEES----SSSEEECGGGSCCHHHHHHHHHHTTCC
T ss_pred ceeecC----CCeEEEechhhCCHHHHHHHHHHcCCC
Confidence 554322 357899999999999999999999874
No 6
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.96 E-value=1.3e-28 Score=193.75 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=120.1
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 15 LKTKYN--NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 15 l~~~~~--~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
+...++ .+.+.|+++++.|+ ++++|||||||||+|+|||+.++. .++.++|+|||..+|++.
T Consensus 23 ~~~~l~~~~~~~~l~~~~~~~~-~~v~Va~SGGkDS~vLL~ll~~~~---------------~~v~~v~vd~g~~~~e~~ 86 (215)
T 1sur_A 23 TNAELEKLDAEGRVAWALDNLP-GEYVLSSSFGIQAAVSLHLVNQIR---------------PDIPVILTDTGYLFPETY 86 (215)
T ss_dssp HHHHHTTSCHHHHHHHHHHHCC-SEEEEECCCCTTHHHHHHHHHHHS---------------TTCEEEEEECSCBCHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHcC-CCEEEEecCCHHHHHHHHHHHHhC---------------CCCeEEEeeCCCCCHHHH
Confidence 344443 78899999999996 799999999999999999999874 368999999999999999
Q ss_pred HHHHHHhhhcCceEEEEcccHH----------------------------HHHHHHHHhCCCcEEEEeeeCCCcc-ccCC
Q 030189 93 SFTYDTASKYVLQLDIIRSDFK----------------------------SGLEALLNAKPIRAIFLGVRIGDPT-AVGQ 143 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~~k----------------------------~~l~~~~~~~~~~~~i~G~R~~es~-~~~~ 143 (181)
+|+++++++||++++++.++.. .++.+++++.+.+++++|+|++|+. +..+
T Consensus 87 ~~v~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r~~~ 166 (215)
T 1sur_A 87 RFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANL 166 (215)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTTTTC
T ss_pred HHHHHHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhhcCC
Confidence 9999999999999998865310 1566777777778899999999964 4445
Q ss_pred cccCCCCCCCCCeeEEecccCCchHHHHHHHhccccC
Q 030189 144 EQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 144 ~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
..+... ++..+++||++|+.+|||.|+..+++-
T Consensus 167 ~~~~~~----~~~~~i~PLl~~t~~dI~~y~~~~~lp 199 (215)
T 1sur_A 167 PVLAIQ----RGVFKVLPIIDWDNRTIYQYLQKHGLK 199 (215)
T ss_dssp CSEEEE----TTEEEECTTTTCCHHHHHHHHHHHTCC
T ss_pred CccccC----CCEEEEechHhCCHHHHHHHHHHhCCC
Confidence 444321 356789999999999999999998864
No 7
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.95 E-value=1.2e-27 Score=195.33 Aligned_cols=146 Identities=15% Similarity=0.244 Sum_probs=119.2
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 15 LKTKYN--NAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 15 l~~~~~--~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
++..++ .++++|+++++.|+ ++++|||| ||||+|||||+.++. .++.++|+|||..|||++
T Consensus 33 ~~~~~~~~~a~~~l~~a~~~~g-~~i~Va~S-GkDS~vLL~Ll~~~~---------------~~i~vv~iDtg~~~~et~ 95 (275)
T 2goy_A 33 LASSLADKSPQDILKAAFEHFG-DELWISFS-GAEDVVLVDMAWKLN---------------RNVKVFSLDTGRLHPETY 95 (275)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHS-TTEEEECC-SSTTHHHHHHHHHHC---------------TTCCEEEECCSCCCHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHcC-CCEEEEee-cHHHHHHHHHHHHhC---------------CCceEEEEeCCCCCHHHH
Confidence 444443 68999999999996 78999999 999999999998873 468999999999999999
Q ss_pred HHHHHHhhhcCceEEEEcccHH----------------------------HHHHHHHHhCCCcEEEEeeeCCCc-c-ccC
Q 030189 93 SFTYDTASKYVLQLDIIRSDFK----------------------------SGLEALLNAKPIRAIFLGVRIGDP-T-AVG 142 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~~k----------------------------~~l~~~~~~~~~~~~i~G~R~~es-~-~~~ 142 (181)
+|+++++++||+++.++.++.. ++++++++ +.++|++|+|++|+ . |..
T Consensus 96 ~~v~~~~~~~gi~l~v~~~~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~--~~~~~itG~r~dds~~~R~~ 173 (275)
T 2goy_A 96 RFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPGTRSQ 173 (275)
T ss_dssp HHHHHHHHHHTCCCEEECCCHHHHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHH--TCSEEECCCCGGGTTSCSCC
T ss_pred HHHHHHHHHHCCeEEEEeCCccCHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHH--hcCchhcCchhhhhhhhhhh
Confidence 9999999999999999887521 24556665 45699999999998 3 444
Q ss_pred CcccCCCCCC----CCCeeEEecccCCchHHHHHHHhccccC
Q 030189 143 QEQFSPSSPG----WPPFMRVNPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 143 ~~~~~~~~~~----~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
+..++.. .+ .++..+++||++|+.+|||.|+..|++-
T Consensus 174 ~~~~~~d-~~~~~~~~g~~~i~PL~~wt~~dV~~Yi~~~~lp 214 (275)
T 2goy_A 174 VAVLEID-GAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELP 214 (275)
T ss_dssp CCSEEEC-TTTCCSSSCCEEECTTTTCCHHHHHHHHHHTTCC
T ss_pred Ccccccc-cccccCCCCeEEEechHhCCHHHHHHHHHHhCCC
Confidence 5544432 11 2567899999999999999999999874
No 8
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.68 E-value=2.2e-16 Score=130.86 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=97.6
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCC-ceEEEecCCCC--chHHHHHHHHHhhhcCceEEEEccc
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFP-IRTIYFESNSA--FPEINSFTYDTASKYVLQLDIIRSD 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~-~~~v~idtg~~--fpe~~~f~~~~~~~~~l~~~~~~~~ 112 (181)
++++|++|||+||+|++|++.+.... ...+ +.++|+|+|.. .++..++++++++.+|++++++..+
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~-----------~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~~~ 93 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNY-----------FSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKED 93 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTT-----------TTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHH-----------cCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 68999999999999999999876310 0146 88999999964 4678899999999999999887753
Q ss_pred HH-------------------HHHHHHHHhCCCcEEEEeeeCCCcc-c------c-----CCcccCCCCCCCCCeeEEec
Q 030189 113 FK-------------------SGLEALLNAKPIRAIFLGVRIGDPT-A------V-----GQEQFSPSSPGWPPFMRVNP 161 (181)
Q Consensus 113 ~k-------------------~~l~~~~~~~~~~~~i~G~R~~es~-~------~-----~~~~~~~~~~~~~~~~~i~P 161 (181)
.. ..+.++.++.|.+.+++|++.+|.. . + ++..+.+.+ ...++|
T Consensus 94 ~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~gl~~~~~~~-----~~iirP 168 (317)
T 1wy5_A 94 VRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPKE-----EVIRRP 168 (317)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHCSCSEE-----TTEECT
T ss_pred chhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCcccccCCCCCC-----CeEECC
Confidence 21 1355666778899999999998732 1 1 112222211 147999
Q ss_pred ccCCchHHHHHHHhccccC
Q 030189 162 ILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 162 i~~Wt~~dVw~yi~~~~~~ 180 (181)
|++|+..||+.|...+++-
T Consensus 169 Ll~~~k~eI~~~~~~~gl~ 187 (317)
T 1wy5_A 169 LYYVKRSEIEEYAKFKGLR 187 (317)
T ss_dssp TTTCCHHHHHHHHHHTTCC
T ss_pred CccCCHHHHHHHHHHcCCC
Confidence 9999999999999998764
No 9
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.68 E-value=1.1e-15 Score=126.39 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCch-HHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFP-EINSF 94 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fp-e~~~f 94 (181)
+..+++.++.|++.+. .++++|++|||+||+|+++|+.++.. .++.++|+|+|...+ |....
T Consensus 4 ~~~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll~~~~g--------------~~v~av~vd~g~~~~~e~~~~ 66 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLAHKAIG--------------DRLHAVFVNTGFLRKGEPEFV 66 (308)
T ss_dssp HHHHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHHHHHHG--------------GGEEEEEEECSCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHHHHhhC--------------CCEEEEEEcCCCCChHHHHHH
Confidence 3455566677776653 47899999999999999999998742 368999999997553 55544
Q ss_pred HHHHhhhcCceEEEEcccH--H---------------------HHHHHHHHhCCCcEEEEeeeCCCcc--ccCCcccCCC
Q 030189 95 TYDTASKYVLQLDIIRSDF--K---------------------SGLEALLNAKPIRAIFLGVRIGDPT--AVGQEQFSPS 149 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~--k---------------------~~l~~~~~~~~~~~~i~G~R~~es~--~~~~~~~~~~ 149 (181)
.+.+++.+|++++++..+- . ..+.++.++.|.+.+++|++.+|.. +.+++.+...
T Consensus 67 ~~~~a~~lgi~~~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~~iks~~~~ 146 (308)
T 2dpl_A 67 VKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQGKIKSHHNV 146 (308)
T ss_dssp HHHHTTTTCCEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC---------------
T ss_pred HHHHHHHcCCcEEEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccchhhccchhhhhcc
Confidence 4447778999998876531 0 1234445566889999999998732 1122222110
Q ss_pred C--CCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 150 S--PGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 150 ~--~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
. +...+...++||.+|+.+||+.|.+.+++
T Consensus 147 ~~l~~~~~~~virPL~~l~K~EI~~~a~~~gl 178 (308)
T 2dpl_A 147 GGLPEKLNLKLIEPLRDLYKDEVRELAKFLGL 178 (308)
T ss_dssp ------CCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred ccCCccCCCeEEEEcccCCHHHHHHHHHHhCC
Confidence 0 01124568999999999999999998765
No 10
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.63 E-value=2.7e-15 Score=130.28 Aligned_cols=144 Identities=13% Similarity=0.019 Sum_probs=103.9
Q ss_pred HHHHHHhcC----CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC---chHHHHHHHHH
Q 030189 26 IQRTLALYS----IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA---FPEINSFTYDT 98 (181)
Q Consensus 26 i~~~~~~~~----~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~---fpe~~~f~~~~ 98 (181)
+.+++..++ .++++||+|||+||+|+||++...... . ..++.++|+|+|.. .++..++++++
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~--~---------~~~v~avhvdhglrg~~s~~~~~~v~~~ 73 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDE--W---------KLQVIAAHVDHMFRGRESEEEMEFVKRF 73 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHT--T---------TCBCEEEEEECTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHH--c---------CCeEEEEEEECCCCccccHHHHHHHHHH
Confidence 444555553 268999999999999999999886421 0 14689999999975 24678899999
Q ss_pred hhhcCceEEEEcccHH-------------------HHHHHHHHhCCCcEEEEeeeCCCcc-c------c-----CCcccC
Q 030189 99 ASKYVLQLDIIRSDFK-------------------SGLEALLNAKPIRAIFLGVRIGDPT-A------V-----GQEQFS 147 (181)
Q Consensus 99 ~~~~~l~~~~~~~~~k-------------------~~l~~~~~~~~~~~~i~G~R~~es~-~------~-----~~~~~~ 147 (181)
|+.+|+++.++..+.. ..+.++.++.|.+.+++|++.+|.. + + ++..+.
T Consensus 74 ~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~ 153 (464)
T 3a2k_A 74 CVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIP 153 (464)
T ss_dssp HHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSC
T ss_pred HHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCC
Confidence 9999999988764311 2456667778899999999999842 1 1 122222
Q ss_pred CCCCCCCCeeEEecccCCchHHHHHHHhccccCC
Q 030189 148 PSSPGWPPFMRVNPILDWSYRLLINNKLFGFIGF 181 (181)
Q Consensus 148 ~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~~~ 181 (181)
+.. ...+...++||++|+..||+.|...+++-+
T Consensus 154 ~~~-~~~~~~iiRPLl~~~k~eI~~ya~~~gl~~ 186 (464)
T 3a2k_A 154 VKR-PFHGGYLIRPFLAVSRAEIEAYCRQMGLSP 186 (464)
T ss_dssp SEE-ECSSSEEECGGGGSCHHHHHHHHHHTCCSS
T ss_pred ccc-cCCCCEEECCCccCcHHHHHHHHHHcCCCe
Confidence 211 012245799999999999999999988753
No 11
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.60 E-value=1.3e-14 Score=127.06 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 14 RLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
..+..+++.++.|++.+ +.++++|++|||+||+|+++|+.++. .++.++|+|+|...++..+
T Consensus 191 ~~~~~~~~~i~~ir~~~---~~~kvvvalSGGvDSsvla~ll~~~g---------------~~v~av~vd~g~~~~~e~~ 252 (503)
T 2ywb_A 191 TPEHVLEELLREVRERA---GKDRVLLAVSGGVDSSTLALLLAKAG---------------VDHLAVFVDHGLLRLGERE 252 (503)
T ss_dssp CHHHHHHHHHHHHHHHH---TTSEEEEEECSSHHHHHHHHHHHHHT---------------CEEEEEEEECSCSCTTHHH
T ss_pred cchhhhHHHHHhhhhhc---cCccEEEEecCCcchHHHHHHHHHcC---------------CeEEEEEEeCCCCChHHHH
Confidence 45666677777777665 44789999999999999999999872 4689999999987777788
Q ss_pred HHHHHhhhcCceEEEEcccH--H---------------------HHHHHHHHhC-CCcEEEEeeeCCC-ccccCC-----
Q 030189 94 FTYDTASKYVLQLDIIRSDF--K---------------------SGLEALLNAK-PIRAIFLGVRIGD-PTAVGQ----- 143 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~~~--k---------------------~~l~~~~~~~-~~~~~i~G~R~~e-s~~~~~----- 143 (181)
.++++++.+|++++++..+- . +.+.++.++. +.+.+++|+..+| ...+.+
T Consensus 253 ~v~~~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~g~~~~ 332 (503)
T 2ywb_A 253 EVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAK 332 (503)
T ss_dssp HHHHHHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC---------
T ss_pred HHHHHHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccCCcccc
Confidence 99999999999998887531 0 1244445555 7889999997665 322110
Q ss_pred -c---ccCCCCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 144 -E---QFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 144 -~---~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
+ .+..-. ...+...++||.+|+.+||++|.+++++
T Consensus 333 iks~~~l~~l~-~~~~~~ii~PL~~l~K~EVr~~a~~~gl 371 (503)
T 2ywb_A 333 IKSHHNVGGLP-EDLEFELLEPFRLLFKDEVRELALLLGL 371 (503)
T ss_dssp --------CCC-SSCCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred ccccccccccc-ccccCceEehhhcCCHHHHHHHHHHcCC
Confidence 0 000000 0123568999999999999999998765
No 12
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.55 E-value=1.6e-14 Score=112.67 Aligned_cols=128 Identities=18% Similarity=0.085 Sum_probs=90.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccH-H
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDF-K 114 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~-k 114 (181)
++++|++|||+||+++++++.+.. .++.++++++|....+-.++++++++.+|++++++..+. .
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~~---------------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~ 68 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKEF---------------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLN 68 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC---------------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGG
T ss_pred CCEEEEccCcHHHHHHHHHHHHcC---------------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHh
Confidence 689999999999999999998763 358889999986555668899999999999987765321 0
Q ss_pred ----------------------------------HHHHHHHHhCCCcEEEEeeeCCCccc--c-------CCcccCCCCC
Q 030189 115 ----------------------------------SGLEALLNAKPIRAIFLGVRIGDPTA--V-------GQEQFSPSSP 151 (181)
Q Consensus 115 ----------------------------------~~l~~~~~~~~~~~~i~G~R~~es~~--~-------~~~~~~~~~~ 151 (181)
..+.++.++.|.+++++|++.+|... . .+..+....
T Consensus 69 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~~~~~~~~~l~~~~~~~- 147 (219)
T 3bl5_A 69 QLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLA- 147 (219)
T ss_dssp GGSTGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHHHHHHHH-
T ss_pred hhcccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCCHHHHHHHHHHHHhc-
Confidence 11234455678899999999998421 1 111110000
Q ss_pred CCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 152 GWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 152 ~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
..++...++||++|+..||+.|...+.+
T Consensus 148 ~~~~~~ii~PL~~~~K~ei~~~a~~~gl 175 (219)
T 3bl5_A 148 MEKPFVIHTPLMWLNKAETWKLADELGA 175 (219)
T ss_dssp HTSCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred cCCCeEEEeccccCCHHHHHHHHHHcCC
Confidence 0024567999999999999999998875
No 13
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.52 E-value=1.8e-14 Score=122.95 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=92.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEccc--
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRSD-- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~~-- 112 (181)
++++|+||||+||+|+++++.+.+. .++.++++|+|. ++..++++++++.+|+ +++++..+
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~g--------------~~V~av~vd~g~--~~e~e~a~~~A~~lGi~~~~vvd~~~e 64 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETYR--------------AEVIAFTADIGQ--GEEVEEAREKALRTGASKAIALDLKEE 64 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHT--------------CEEEEEEEESSC--SSCHHHHHHHHHHHTCSEEEEEECHHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHhhC--------------CcEEEEEEeCCC--HHHHHHHHHHHHHhCCCeEEEEeCcHH
Confidence 3689999999999999999988732 358899999998 5668999999999999 67765432
Q ss_pred HH------------------------------HHHHHHHHhCCCcEEEEeeeCC--Ccc--ccCCcccCCCCCCCCCeeE
Q 030189 113 FK------------------------------SGLEALLNAKPIRAIFLGVRIG--DPT--AVGQEQFSPSSPGWPPFMR 158 (181)
Q Consensus 113 ~k------------------------------~~l~~~~~~~~~~~~i~G~R~~--es~--~~~~~~~~~~~~~~~~~~~ 158 (181)
|. ..+.++.++.|.+++++|++.+ |.. +.++..+. |+...
T Consensus 65 f~~~~~~~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~g~~~l~------p~l~i 138 (400)
T 1kor_A 65 FVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFELTAYALK------PDIKV 138 (400)
T ss_dssp HHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHC------TTCEE
T ss_pred HHHHhhHHHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHHHHHHhcC------CCCEE
Confidence 10 1245556667899999999996 321 11122221 23456
Q ss_pred EecccCC---chHHHHHHHhccccC
Q 030189 159 VNPILDW---SYRLLINNKLFGFIG 180 (181)
Q Consensus 159 i~Pi~~W---t~~dVw~yi~~~~~~ 180 (181)
++||.+| +..|||.|+..+.+-
T Consensus 139 i~PL~~~~~~tK~eI~~ya~~~gip 163 (400)
T 1kor_A 139 IAPWREWSFQGRKEMIAYAEAHGIP 163 (400)
T ss_dssp ECGGGTCCCCSHHHHHHHHHHTTCC
T ss_pred EEeecccccCCHHHHHHHHHHcCCC
Confidence 9999999 999999999998764
No 14
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.50 E-value=1.8e-13 Score=117.84 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=94.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--chHHHHHHHHHhhhcCceEEEEcccH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--FPEINSFTYDTASKYVLQLDIIRSDF 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--fpe~~~f~~~~~~~~~l~~~~~~~~~ 113 (181)
++++||+|||+||+|+||++....... . ..++.++|+|+|.. ..+..++++++|+.+|+++.++..+.
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~-~---------g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 83 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTEN-P---------GVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTS-T---------TCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhc-C---------CCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 689999999999999999998864210 0 14688999999964 34678899999999999998876421
Q ss_pred -----------HHHHHHHHHh--CCCcEEEEeeeCCCcc-c------cC-----CcccCCCCCCCCCeeEEecccCCchH
Q 030189 114 -----------KSGLEALLNA--KPIRAIFLGVRIGDPT-A------VG-----QEQFSPSSPGWPPFMRVNPILDWSYR 168 (181)
Q Consensus 114 -----------k~~l~~~~~~--~~~~~~i~G~R~~es~-~------~~-----~~~~~~~~~~~~~~~~i~Pi~~Wt~~ 168 (181)
++.-.+++.+ .+.+.+++|++.||.. . ++ +..+.+.. ...+...++||++|+..
T Consensus 84 ~~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~gm~~~~-~~~~~~iiRPLl~~~k~ 162 (433)
T 1ni5_A 84 AQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVS-EFAGTRLIRPLLARTRG 162 (433)
T ss_dssp CCSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEE-EETTEEEECGGGSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccchHHHHHHHHHHHcCCCcccccCCCCcc-ccCCceEEccCccCCHH
Confidence 1111222222 2478999999998842 1 11 12222211 01134579999999999
Q ss_pred HHHHHHhccccCC
Q 030189 169 LLINNKLFGFIGF 181 (181)
Q Consensus 169 dVw~yi~~~~~~~ 181 (181)
||+.|...+++.+
T Consensus 163 eI~~y~~~~gl~~ 175 (433)
T 1ni5_A 163 ELVQWARQYDLRW 175 (433)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCe
Confidence 9999999998753
No 15
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=1.8e-14 Score=112.21 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=87.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc--H
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD--F 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--~ 113 (181)
++++|++|||+||+|+++++.+.. .++.++++++|... ..++++++++.+|+++.++..+ +
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~g---------------~~v~~~~v~~~~~~--~~~~~~~~a~~lgi~~~~~~~~~~~ 69 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKLG---------------YNPHLITINFGVIP--SYKLAEETAKILGFKHKVITLDRKI 69 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTT---------------EEEEEEEEECSSSC--TTHHHHHHHHHHTCEEEEEECCTHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHcC---------------CCeEEEEEeCCCch--HHHHHHHHHHHhCCCEEEEECCHHH
Confidence 589999999999999999987642 36888999998644 4578999999999998887643 1
Q ss_pred H-H-----------------HHHHHHHh--CCCcEEEEeeeCCCcc-c---cCCcccCCCCCCCCCeeEEecccCCchHH
Q 030189 114 K-S-----------------GLEALLNA--KPIRAIFLGVRIGDPT-A---VGQEQFSPSSPGWPPFMRVNPILDWSYRL 169 (181)
Q Consensus 114 k-~-----------------~l~~~~~~--~~~~~~i~G~R~~es~-~---~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~d 169 (181)
. + ....++.. .+.+++++|++.||.. . .++..+... .+...++||+.|+..|
T Consensus 70 ~~~~~~~~~~~~~~~~~c~~~~~~~l~~~A~g~~~i~tGh~~dD~~et~~~~gl~~~~~~----~~~~iirPLl~~~k~e 145 (203)
T 3k32_A 70 VEKAADMIIEHKYPGPAIQYVHKTVLEILADEYSILADGTRRDDRVPKLSYSEIQSLEMR----KNIQYITPLMGFGYKT 145 (203)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHTTTCSEEECCCCTTCCSSCCCHHHHHHHHHH----HTCEEECGGGGCCHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCEEEECCCcccchhhcchhhccCcccc----cCCeEEeccCCCCHHH
Confidence 1 0 01112221 2789999999999843 1 122222111 1345789999999999
Q ss_pred HHHHHhcc
Q 030189 170 LINNKLFG 177 (181)
Q Consensus 170 Vw~yi~~~ 177 (181)
|+.|...+
T Consensus 146 I~~~a~~~ 153 (203)
T 3k32_A 146 LRHLASEF 153 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
No 16
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.47 E-value=1.3e-13 Score=109.06 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=92.0
Q ss_pred CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce-EEEEccc-
Q 030189 35 IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ-LDIIRSD- 112 (181)
Q Consensus 35 ~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~-~~~~~~~- 112 (181)
.++++|++|||+||+|+++++.+.. .++.++++|.|...++-.++++++++.+|++ ++++..+
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~~---------------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQDY---------------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC---------------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcC---------------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChh
Confidence 3689999999999999999998763 3578899999976556678899999999998 7666533
Q ss_pred H--------------------------------HHHH-----HHHHHhCCCcEEEEeeeCCCcc--cc-------CCccc
Q 030189 113 F--------------------------------KSGL-----EALLNAKPIRAIFLGVRIGDPT--AV-------GQEQF 146 (181)
Q Consensus 113 ~--------------------------------k~~l-----~~~~~~~~~~~~i~G~R~~es~--~~-------~~~~~ 146 (181)
+ +..+ .++.++.|.+.+++|++.+|.. +. ++..+
T Consensus 67 l~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~~~~r~~~~~~~~~~ 146 (232)
T 2pg3_A 67 LNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQA 146 (232)
T ss_dssp HHHTSHHHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHH
T ss_pred HHHHhhhhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCCCCCCHHHHHHHHHH
Confidence 1 1111 3334556888999999999842 11 11111
Q ss_pred -CCCCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 147 -SPSSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 147 -~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
...+. .+...++||.+|+..|||.|...+.+
T Consensus 147 ~~~~~~--~~~~i~~PL~~~~K~ei~~~a~~~gl 178 (232)
T 2pg3_A 147 IVLGIA--RDIRFETPLMWLNKAETWALADYYQQ 178 (232)
T ss_dssp HHHHHT--SCCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred HHHhCC--CCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 00000 13456899999999999999988764
No 17
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.46 E-value=3.4e-13 Score=118.78 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-hHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-PEINS 93 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-pe~~~ 93 (181)
++..+++.++.+++.+. .++++|++|||+||+|+++|+.++.. .++.++|+|+|... .|..+
T Consensus 213 ~~~~~~~~i~~i~~~v~---~~kvlvalSGGvDSsvla~ll~~~~G--------------~~v~av~vd~g~~~~~e~~~ 275 (527)
T 3tqi_A 213 TKHIIEDSIRDIQEKVG---KEQVIVGLSGGVDSAVTATLVHKAIG--------------DQLVCVLVDTGLLRLNEVDE 275 (527)
T ss_dssp SHHHHHHHHHHHHHHHT---TSCEEEECTTTHHHHHHHHHHHHHHG--------------GGEEEEEECCSCSCTTHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CCeEEEEEecCcCHHHHHHHHHHHhC--------------CeEEEEEeccCCCChhHHHH
Confidence 44556667677776653 37899999999999999999998742 36899999999765 46666
Q ss_pred HHHHHhhhcCceEEEEccc--H------------H---------HHHHHHHHhCCCcEEEEeeeCCCc-cccCCc----c
Q 030189 94 FTYDTASKYVLQLDIIRSD--F------------K---------SGLEALLNAKPIRAIFLGVRIGDP-TAVGQE----Q 145 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~~--~------------k---------~~l~~~~~~~~~~~~i~G~R~~es-~~~~~~----~ 145 (181)
..+.+++.+|++++++..+ + + +.+.++.++.+.+.+++|+..+|- ....++ .
T Consensus 276 ~~~~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~ 355 (527)
T 3tqi_A 276 VLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGH 355 (527)
T ss_dssp HHHHHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHHCC---------
T ss_pred HHHHHHHHcCCcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccccccccCCChhh
Confidence 6677999999999888642 1 0 112333445678899999988873 211110 0
Q ss_pred cCCCCC---CC---CCeeEEecccCCchHHHHHHHhcccc
Q 030189 146 FSPSSP---GW---PPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 146 ~~~~~~---~~---~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
...+-. +. .++..++||.+++.+||.+|.+++++
T Consensus 356 ~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGl 395 (527)
T 3tqi_A 356 IIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLELGL 395 (527)
T ss_dssp -----------------CEECTTTTCCHHHHHHHHHHHTC
T ss_pred eeeeecccccCcccccCccccchhcCCHHHHHHHHHHcCC
Confidence 000000 11 23447899999999999999988765
No 18
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.46 E-value=7.8e-13 Score=107.00 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFT 95 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~ 95 (181)
++.++.....|+..+...+.++++|++|||+||+|+++|+.++.. .++.+++++++...++..+++
T Consensus 6 ~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~~--------------~~v~av~~~~~~~~~~e~~~a 71 (268)
T 1xng_A 6 QKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFK--------------ENAHALLMPSSVSMPENKTDA 71 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHG--------------GGEEEEECCCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhCC--------------CCEEEEEeCCCCCCHHHHHHH
Confidence 445556667777777766667899999999999999999998751 358899999987778889999
Q ss_pred HHHhhhcCceEEEEccc-----HHH--------------------HHHHHHHhCCCcEEEEeeeCCCccccCCcccCCCC
Q 030189 96 YDTASKYVLQLDIIRSD-----FKS--------------------GLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPSS 150 (181)
Q Consensus 96 ~~~~~~~~l~~~~~~~~-----~k~--------------------~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~~ 150 (181)
+++++.+|+++.++..+ +.+ .+.++.++.|..++.+|.. +|... +. ....
T Consensus 72 ~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~-~E~~~-Gy--~t~~- 146 (268)
T 1xng_A 72 LNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK-SERML-GY--GTLF- 146 (268)
T ss_dssp HHHHHHHTCCEEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH-HHHHH-TC--SCTT-
T ss_pred HHHHHHcCCCEEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcH-HHHhc-Cc--cccc-
Confidence 99999999998887632 100 1333445567777767653 44321 11 1111
Q ss_pred CCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 151 PGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 151 ~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
+ .+...++||.+|+..||+.|..++++
T Consensus 147 -g-d~~~~i~PL~~l~K~ev~~la~~~gi 173 (268)
T 1xng_A 147 -G-DLACAINPIGELFKTEVYELARRLNI 173 (268)
T ss_dssp -T-TTCCSEETTTTSCHHHHHHHHHHTTC
T ss_pred -C-CCCeeEEecCCCCHHHHHHHHHHcCC
Confidence 1 12346999999999999999998764
No 19
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.42 E-value=1.2e-12 Score=105.22 Aligned_cols=138 Identities=14% Similarity=-0.012 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHH
Q 030189 16 KTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFT 95 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~ 95 (181)
+..++...+.|+. |+.++++|++|||+||+|+++|+.++.. +.++.++++++|.. +..+++
T Consensus 7 ~~~~~~l~~~i~~----~~~~~vvv~lSGGiDSs~~~~l~~~~~g-------------~~~v~av~~~~~~~--~~~~~a 67 (257)
T 2e18_A 7 DKVIERILEFIRE----KGNNGVVIGISGGVDSATVAYLATKALG-------------KEKVLGLIMPYFEN--KDVEDA 67 (257)
T ss_dssp HHHHHHHHHHHHH----HCTTCEEEECCSSHHHHHHHHHHHHHHC-------------GGGEEEEECCSSCS--THHHHH
T ss_pred HHHHHHHHHHHHH----hCCCcEEEEecCCHHHHHHHHHHHHhcC-------------CCcEEEEEeCCCCc--hHHHHH
Confidence 3444444444444 3557899999999999999999998752 03588999999864 667889
Q ss_pred HHHhhhcCceEEEEcccH--H------------------------HHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCC
Q 030189 96 YDTASKYVLQLDIIRSDF--K------------------------SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPS 149 (181)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~--k------------------------~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~ 149 (181)
+++++.+|++++++..+. . ..+.++.++.|..++.+|++.++...- ....
T Consensus 68 ~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~~Gy----~t~~ 143 (257)
T 2e18_A 68 KLVAEKLGIGYKVINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFLTGY----FTKW 143 (257)
T ss_dssp HHHHHHHTCEEEECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHHHTC----SCTT
T ss_pred HHHHHHhCCCEEEEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHhcCC----eecc
Confidence 999999999988876421 0 013344455677888888865443111 1110
Q ss_pred CCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 150 SPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 150 ~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
+ .+...++||.+|+..||+.|..++++
T Consensus 144 --g-~~~~~i~Pl~~l~K~ev~~la~~~gi 170 (257)
T 2e18_A 144 --G-DGASDYAPIINLYKTEVWEIAKRIGV 170 (257)
T ss_dssp --S-TTCSSBCTTTTSCHHHHHHHHHHHTC
T ss_pred --C-CCccCEeecCCCcHHHHHHHHHHcCC
Confidence 1 13446999999999999999998765
No 20
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.35 E-value=1.2e-11 Score=99.20 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF 94 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f 94 (181)
.++..+.....|+..++..+.++++|++|||+||+|+++|+.++.. .++.+++++++...++..+.
T Consensus 6 ~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~g--------------~~v~av~~~~~~~~~~~~~~ 71 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALK--------------ENVFALLMPTQISNKANLED 71 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHT--------------TSEEEEECCSCCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHcC--------------CcEEEEEecCCCCCHHHHHH
Confidence 4455666777888888887778999999999999999999998742 36889999998766777888
Q ss_pred HHHHhhhcCceEEEEccc--HH-----------------------HHHHHHHHhCCCcEEEEeeeCCCccccCCcccCCC
Q 030189 95 TYDTASKYVLQLDIIRSD--FK-----------------------SGLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSPS 149 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~--~k-----------------------~~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~~ 149 (181)
++++++.+|++++++.-+ +. ..+..+.++.|..++.+|+ .+|... + .....
T Consensus 72 a~~~a~~lgi~~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~~-g--~~t~~ 147 (249)
T 3p52_A 72 ALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELLL-G--YGTIY 147 (249)
T ss_dssp HHHHHHHHTCEEEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHH-T--CSCTT
T ss_pred HHHHHHHhCCCEEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHHc-c--chhhh
Confidence 999999999998877532 00 1234445556654444443 344321 1 11111
Q ss_pred CCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 150 SPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 150 ~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
. .+...++||.+++..||+.+.++.++
T Consensus 148 g---d~~~~i~PL~~l~K~eV~~la~~~gi 174 (249)
T 3p52_A 148 G---DLACAFNPIGSLYKSEIYALAKYLNL 174 (249)
T ss_dssp T---TTCCSEETTTTSCHHHHHHHHHHTTC
T ss_pred c---cccCccccccCCcHHHHHHHHHHcCC
Confidence 1 11235899999999999999988764
No 21
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.35 E-value=9.1e-12 Score=109.60 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCch-HHH
Q 030189 14 RLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFP-EIN 92 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fp-e~~ 92 (181)
.++..++..++.|++.+. .+++++++|||+||+|+++|+.++.. .++.++|+|+|.... |..
T Consensus 209 ~~~~~~~~~~~~ir~~v~---~~~vvvalSGGvDSsv~a~ll~~a~G--------------~~v~av~v~~g~~~~~e~~ 271 (525)
T 1gpm_A 209 TPAKIIDDAVARIREQVG---DDKVILGLSGGVDSSVTAMLLHRAIG--------------KNLTCVFVDNGLLRLNEAE 271 (525)
T ss_dssp CHHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHHHHHHG--------------GGEEEEEEECSCSCTTHHH
T ss_pred hHHHHHHhhhhhhhhhhc---ccceEEEecCCCCHHHHHHHHHHHhC--------------CCEEEEEEeCCCCCchHHH
Confidence 355666677777777653 36899999999999999999998742 368999999997543 444
Q ss_pred HHHHHHhhhcCceEEEEccc--HH---------------------HHHHHHHHhC-CCcEEEEeeeCCC-ccc-c----C
Q 030189 93 SFTYDTASKYVLQLDIIRSD--FK---------------------SGLEALLNAK-PIRAIFLGVRIGD-PTA-V----G 142 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~--~k---------------------~~l~~~~~~~-~~~~~i~G~R~~e-s~~-~----~ 142 (181)
+..+.+++.+|++++++..+ +. +.+.++.++. +.+.+++|+..+| ... + +
T Consensus 272 ~~~~~la~~lgi~~~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~~~~~~~ 351 (525)
T 1gpm_A 272 QVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGK 351 (525)
T ss_dssp HHHHHHTTTTCCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTTC-----
T ss_pred HHHHHHHHHhCCcEEEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhcCccccc
Confidence 44455899999999887642 11 1234445555 7789999997654 111 1 0
Q ss_pred Cccc-CCC-CCCC---CCeeEEecccCCchHHHHHHHhcccc
Q 030189 143 QEQF-SPS-SPGW---PPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 143 ~~~~-~~~-~~~~---~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
...+ +.. -.+. .++..++||.+|+.+||++|.++.++
T Consensus 352 s~~iks~~~l~gl~~~~~~~~i~PL~~l~K~EVr~la~~lgl 393 (525)
T 1gpm_A 352 AHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGL 393 (525)
T ss_dssp -----------------CCEEECTTTTCCHHHHHHHHHHTTC
T ss_pred cccccccccccccccccCCcEEehhhcCCHHHHHHHHHHcCC
Confidence 0000 000 0011 12457999999999999999987754
No 22
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.33 E-value=4.6e-12 Score=107.26 Aligned_cols=129 Identities=11% Similarity=0.023 Sum_probs=92.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--------chHHHHHHHHHhhhcCceEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--------FPEINSFTYDTASKYVLQLD 107 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--------fpe~~~f~~~~~~~~~l~~~ 107 (181)
.+++|++|||+||+|+++|+.+.. .++.++|++++.. .++..+.++++++.+|++++
T Consensus 10 ~kVlVa~SGGvDSsv~a~lL~~~G---------------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~ 74 (376)
T 2hma_A 10 TRVVVGMSGGVDSSVTALLLKEQG---------------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYY 74 (376)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHTT---------------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEEeCHHHHHHHHHHHHHcC---------------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEE
Confidence 689999999999999999998763 4688899998753 24667889999999999998
Q ss_pred EEccc--HH-----------------------------HHHHHHHHhCCCcEEEEeeeCCCcc-ccCC-cccCCCCC---
Q 030189 108 IIRSD--FK-----------------------------SGLEALLNAKPIRAIFLGVRIGDPT-AVGQ-EQFSPSSP--- 151 (181)
Q Consensus 108 ~~~~~--~k-----------------------------~~l~~~~~~~~~~~~i~G~R~~es~-~~~~-~~~~~~~~--- 151 (181)
++..+ +. ..+.++.++.+.+.++||+..++.. ...+ ..+...+.
T Consensus 75 vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kd 154 (376)
T 2hma_A 75 SVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKD 154 (376)
T ss_dssp EEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTC
T ss_pred EEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhccccccc
Confidence 87642 21 1234445567889999999887732 1111 11111110
Q ss_pred ------CCCC---eeEEecccCCchHHHHHHHhcccc
Q 030189 152 ------GWPP---FMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 152 ------~~~~---~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
..+. ...++||.+++..||++|...+.+
T Consensus 155 qsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl 191 (376)
T 2hma_A 155 QTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGL 191 (376)
T ss_dssp CGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTC
T ss_pred cchhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCC
Confidence 0000 246999999999999999988765
No 23
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.27 E-value=1.3e-11 Score=105.59 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=87.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC-CCchHHHHHHHHHhhhc-----CceEEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN-SAFPEINSFTYDTASKY-----VLQLDII 109 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg-~~fpe~~~f~~~~~~~~-----~l~~~~~ 109 (181)
++++|++|||+||+|+++++.+.. .++.++|++++ ..-++-.+.+.++++.+ |++++++
T Consensus 188 ~kvlvalSGGvDS~vll~ll~~~G---------------~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv 252 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKRG---------------VSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLV 252 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHBT---------------EEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEE
T ss_pred CeEEEEeCCCChHHHHHHHHHHcC---------------CcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 479999999999999999998752 36888999985 33344455566666666 8998887
Q ss_pred ccc------------------HHH----HHHHHHHhCCCcEEEEeeeCCCcccc---CCcccCCCCCCCCCeeEEecccC
Q 030189 110 RSD------------------FKS----GLEALLNAKPIRAIFLGVRIGDPTAV---GQEQFSPSSPGWPPFMRVNPILD 164 (181)
Q Consensus 110 ~~~------------------~k~----~l~~~~~~~~~~~~i~G~R~~es~~~---~~~~~~~~~~~~~~~~~i~Pi~~ 164 (181)
..+ .++ .+.++.++.|.+++++|+..+|.... ++..+... .+...++||+.
T Consensus 253 ~~~~~~~~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~~l~~~~~~----~~~~virPL~~ 328 (413)
T 2c5s_A 253 PFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEV----TNYPVIRPLIT 328 (413)
T ss_dssp ECHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGGG----CCSCEECTTTT
T ss_pred ECcHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHhccccc----CCCEEEeccCC
Confidence 642 111 22344566789999999999884321 22222111 13457999999
Q ss_pred CchHHHHHHHhcccc
Q 030189 165 WSYRLLINNKLFGFI 179 (181)
Q Consensus 165 Wt~~dVw~yi~~~~~ 179 (181)
++..||.+|.+..++
T Consensus 329 l~K~eI~~~a~~~Gl 343 (413)
T 2c5s_A 329 MDKLEIIKIAEEIGT 343 (413)
T ss_dssp CCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 999999999988763
No 24
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.26 E-value=3.3e-11 Score=96.65 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF 94 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f 94 (181)
.++.++.....|+..+...+.++++|++|||+||+|+++|+.++.. ..+ +++++++...++..++
T Consensus 9 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~~--------------~~~-av~~~~~~~~~~~~~~ 73 (249)
T 3fiu_A 9 PKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGL--------------PTT-ALILPSDNNQHQDMQD 73 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTS--------------CEE-EEECCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhCC--------------CCE-EEEecCCCCCHHHHHH
Confidence 3556667777888888777778999999999999999999988742 234 8999988666778899
Q ss_pred HHHHhhhcCceEEEEccc--H-----------H---H----------------HHHHHHHhCCCcEEEEeeeCCCccccC
Q 030189 95 TYDTASKYVLQLDIIRSD--F-----------K---S----------------GLEALLNAKPIRAIFLGVRIGDPTAVG 142 (181)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~--~-----------k---~----------------~l~~~~~~~~~~~~i~G~R~~es~~~~ 142 (181)
++++++.+|++++++.-+ + . . .+..+.++.|..++.|| +.+|... +
T Consensus 74 a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TG-n~sE~~~-G 151 (249)
T 3fiu_A 74 ALELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTD-NACEWYM-G 151 (249)
T ss_dssp HHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCC-CHHHHHH-T
T ss_pred HHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECC-CHHHHhc-C
Confidence 999999999998887531 1 0 0 12333444566667777 4455321 1
Q ss_pred CcccCCCCCCCCCeeEEecccCCchHHHHHHHhcccc
Q 030189 143 QEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
. +.... .+...++||.+++..||+.+.++.++
T Consensus 152 ~--~t~~g---d~~~~i~PL~~l~K~eVr~lA~~lgl 183 (249)
T 3fiu_A 152 Y--FTKFG---DGAADILPLVNLKKSQVFELGKYLDV 183 (249)
T ss_dssp C--SCTTT---TTCCSBCTTTTCCHHHHHHHHHHTTC
T ss_pred c--hhccC---CCCcceeecccCcHHHHHHHHHHcCC
Confidence 1 11111 12336999999999999999887654
No 25
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.26 E-value=1.4e-11 Score=104.42 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=91.2
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--------chHHHHHHHHHhhhcCceEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--------FPEINSFTYDTASKYVLQLD 107 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--------fpe~~~f~~~~~~~~~l~~~ 107 (181)
.+++|++|||+||+|+++|+.+.. .++.++|++++.. .++..+.++++++.+|+++.
T Consensus 18 ~kVvVa~SGGvDSsv~a~lL~~~G---------------~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~ 82 (380)
T 2der_A 18 KKVIVGMSGGVDSSVSAWLLQQQG---------------YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELH 82 (380)
T ss_dssp CEEEEECCSCSTTHHHHHHHHTTC---------------CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CEEEEEEEChHHHHHHHHHHHHcC---------------CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 689999999999999999998752 4688899998653 24567889999999999998
Q ss_pred EEccc--HH-----------------------------HHHHHHHHh-CCCcEEEEeeeCCCccccC-CcccCCCCC---
Q 030189 108 IIRSD--FK-----------------------------SGLEALLNA-KPIRAIFLGVRIGDPTAVG-QEQFSPSSP--- 151 (181)
Q Consensus 108 ~~~~~--~k-----------------------------~~l~~~~~~-~~~~~~i~G~R~~es~~~~-~~~~~~~~~--- 151 (181)
++..+ ++ ..+.++..+ .+.+.++||+..++..... +..+...+.
T Consensus 83 vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~kd 162 (380)
T 2der_A 83 TVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKD 162 (380)
T ss_dssp EEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTC
T ss_pred EEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhcccccccc
Confidence 87642 21 013334455 7899999999888632111 111111110
Q ss_pred ------CCC--C-eeEEecccCCchHHHHHHHhcccc
Q 030189 152 ------GWP--P-FMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 152 ------~~~--~-~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
..+ + ...++||.+++..||++|..++.+
T Consensus 163 qsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl 199 (380)
T 2der_A 163 QSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGL 199 (380)
T ss_dssp CGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTC
T ss_pred cceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCC
Confidence 011 1 247999999999999999998765
No 26
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.17 E-value=3.1e-10 Score=100.50 Aligned_cols=147 Identities=14% Similarity=0.046 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHH
Q 030189 15 LKTKYNNAINVIQRTLALYS-IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEIN 92 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~-~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~ 92 (181)
.+..+++.++.|++. + .+++++++|||+||+|+++|+.++.. .++.++|+|+|.. ..|..
T Consensus 238 ~~~~~~~~i~~ir~~----g~~~~vvvalSGGvDSsv~a~ll~~~~G--------------~~v~~v~vd~g~~~~~e~~ 299 (556)
T 3uow_A 238 PIRYHELELKNIEKY----KHDHYVIAAMSGGIDSTVAAAYTHKIFK--------------ERFFGIFIDNGLLRKNEAE 299 (556)
T ss_dssp HHHHHHHHHHHHGGG----TTTCEEEEECCSSHHHHHHHHHHHHHHG--------------GGEEEEEEECSCSCTTHHH
T ss_pred cccccccceeeeeec----CCCceEEEEcccCCCHHHHHHHHHHHhC--------------CeEEEEEEecCCCChHHHH
Confidence 455555665555543 4 47899999999999999999998753 3689999999975 35777
Q ss_pred HHHHHHhhhc-CceEEEEccc--HH---------------------HHHHHHHHhCCC----cEEEEeeeCCCc-cccCC
Q 030189 93 SFTYDTASKY-VLQLDIIRSD--FK---------------------SGLEALLNAKPI----RAIFLGVRIGDP-TAVGQ 143 (181)
Q Consensus 93 ~f~~~~~~~~-~l~~~~~~~~--~k---------------------~~l~~~~~~~~~----~~~i~G~R~~es-~~~~~ 143 (181)
+..+.+++.+ |++++++..+ +. +-+.++.++.+. +.+++|+..+|- .....
T Consensus 300 ~~~~~~~~~l~gi~~~~vd~~~~f~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ies~~~ 379 (556)
T 3uow_A 300 NVYTFLKSTFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCS 379 (556)
T ss_dssp HHHHHHHHHCTTSEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCCeEEeccHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHHHhhccc
Confidence 8778899999 9999888742 11 123444555553 789999876652 11110
Q ss_pred c-----ccCCCC-CCC---CCeeEEecccCCchHHHHHHHhcccc
Q 030189 144 E-----QFSPSS-PGW---PPFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 144 ~-----~~~~~~-~~~---~~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
. .....+ .+. .++..+.||.+++.+||..|-++..+
T Consensus 380 ~g~~~~iks~~n~~gl~~~~~~~li~PL~~l~K~EVr~la~~lGl 424 (556)
T 3uow_A 380 KNLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDDVKTLSRELNL 424 (556)
T ss_dssp -------------------CCCEEECTTTTCCHHHHHHHHHTTTC
T ss_pred ccccceecccccccccccccccceEeecccCcHHHHHHHHHHcCC
Confidence 0 000000 011 13457999999999999999888764
No 27
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.07 E-value=1.6e-10 Score=98.91 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=87.7
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce-EEEEccc--
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ-LDIIRSD-- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~-~~~~~~~-- 112 (181)
++++|++|||+||+|+++++.+.. .++.++++|.|.. +-.+++++.++.+|++ ++++...
T Consensus 6 ~kVvvalSGGlDSsvll~lL~e~G---------------~eV~av~vd~g~~--~e~e~a~~~A~~lGi~~~~vvd~~~e 68 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWLKEQG---------------YDVIAYLANIGQK--EDFEEARKKALKLGAKKVFIEDVSRE 68 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTT---------------EEEEEEEEESSCC--CCHHHHHHHHHHHTCSEEEEEECHHH
T ss_pred CeEEEEEcChHHHHHHHHHHHHcC---------------CEEEEEEEECCcH--HHHHHHHHHHHHhCCCEEEEEeChHH
Confidence 589999999999999999998752 3688899999874 3368899999999997 6665321
Q ss_pred H------------------------------HHHHHHHHHhCCCcEEEEeeeCC--CccccCC--cccCCCCCCCCCeeE
Q 030189 113 F------------------------------KSGLEALLNAKPIRAIFLGVRIG--DPTAVGQ--EQFSPSSPGWPPFMR 158 (181)
Q Consensus 113 ~------------------------------k~~l~~~~~~~~~~~~i~G~R~~--es~~~~~--~~~~~~~~~~~~~~~ 158 (181)
| ...+.++.++.|.+++++|+... |..+-.+ ..+. |+...
T Consensus 69 f~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~lg~~~l~------p~l~i 142 (413)
T 2nz2_A 69 FVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLA------PQIKV 142 (413)
T ss_dssp HHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHC------TTCEE
T ss_pred HHHHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHHHHHHhcC------CCCce
Confidence 1 01234555667899999999973 2211111 1111 24567
Q ss_pred Eeccc------CC-chHHHHHHHhccccC
Q 030189 159 VNPIL------DW-SYRLLINNKLFGFIG 180 (181)
Q Consensus 159 i~Pi~------~W-t~~dVw~yi~~~~~~ 180 (181)
+.|+. +| +..||.+|...+++-
T Consensus 143 i~Pl~d~~~ll~~~sK~EI~~yA~~~Gip 171 (413)
T 2nz2_A 143 IAPWRMPEFYNRFKGRNDLMEYAKQHGIP 171 (413)
T ss_dssp ECGGGCHHHHTTCC-CHHHHHHHHHTTCC
T ss_pred eccccchhhhccCCCHHHHHHHHHHcCCC
Confidence 89999 89 999999999998763
No 28
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.03 E-value=2.6e-10 Score=98.44 Aligned_cols=124 Identities=14% Similarity=0.026 Sum_probs=88.6
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEccc--
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRSD-- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~~-- 112 (181)
++++|+||||+||+|+++++.+.. .++.++++|.|..-.+-.+++++.++++|+ ++.++...
T Consensus 11 ~KVvVA~SGGlDSSvll~~L~e~G---------------~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~ee 75 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWMRQKG---------------AVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQ 75 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHTT---------------CEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHH
T ss_pred CeEEEEEcChHHHHHHHHHHHHcC---------------CEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeChHH
Confidence 689999999999999999998752 468899999997423345788899999999 66665431
Q ss_pred HH---------------------------------HHHHHHHHhCCCcEEEEeeeC--CCccc--cCCcccCCCCCCCCC
Q 030189 113 FK---------------------------------SGLEALLNAKPIRAIFLGVRI--GDPTA--VGQEQFSPSSPGWPP 155 (181)
Q Consensus 113 ~k---------------------------------~~l~~~~~~~~~~~~i~G~R~--~es~~--~~~~~~~~~~~~~~~ 155 (181)
|. ..+.++.++.|.+.+++|+.. +|..+ ....... |+
T Consensus 76 f~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq~rf~~~~~al~------p~ 149 (455)
T 1k92_A 76 LVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTN------AE 149 (455)
T ss_dssp HHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHHHHHHHHHC------TT
T ss_pred HHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHhcC------CC
Confidence 10 123445556789999999962 33221 1111111 34
Q ss_pred eeEEecccC-------CchHHHHHHHhccccC
Q 030189 156 FMRVNPILD-------WSYRLLINNKLFGFIG 180 (181)
Q Consensus 156 ~~~i~Pi~~-------Wt~~dVw~yi~~~~~~ 180 (181)
.-.+.|+.+ ++.+||.+|...+++-
T Consensus 150 l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp 181 (455)
T 1k92_A 150 LQIYKPWLDTDFIDELGGRHEMSEFMIACGFD 181 (455)
T ss_dssp CEEECGGGCHHHHHHSSSHHHHHHHHHHTTCC
T ss_pred CEEECeeccccccccCCCHHHHHHHHHHcCCC
Confidence 567899988 6999999999999874
No 29
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.03 E-value=2.5e-09 Score=96.89 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 14 RLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
..+..++..++.|++.+ +.+++++++|||+||+|+++|+.++.. +.++.++|+|+|..-.+-.+
T Consensus 222 ~~~~~~~~~i~~Ir~~v---~~~~vvv~lSGGvDSsVla~Ll~~alG-------------~~~V~aV~vd~g~~~~~e~e 285 (697)
T 2vxo_A 222 TVQNRELECIREIKERV---GTSKVLVLLSGGVDSTVCTALLNRALN-------------QEQVIAVHIDNGFMRKRESQ 285 (697)
T ss_dssp CHHHHHHHHHHHHHHHH---TTCEEEEECCSSHHHHHHHHHHHHHSC-------------GGGEEEEEEECSCCCSSTTH
T ss_pred hhhHHHHHHHHHHHHHh---cccceEEEccCchHHHHHHHHHHHhcC-------------CceEEEEEeccccCCcchHH
Confidence 35566667777777765 337899999999999999999998741 03689999999975444467
Q ss_pred HHHHHhhhcCceEEEEccc--H--------------------------------HHH-----H----HHHHHhCCCc---
Q 030189 94 FTYDTASKYVLQLDIIRSD--F--------------------------------KSG-----L----EALLNAKPIR--- 127 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~~--~--------------------------------k~~-----l----~~~~~~~~~~--- 127 (181)
.++++++++|++++++..+ + ++. + .++.++.+.+
T Consensus 286 ~a~~~a~~lGI~~~vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~ 365 (697)
T 2vxo_A 286 SVEEALKKLGIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEE 365 (697)
T ss_dssp HHHHHHHHTTCCEEEEECHHHHHTCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTS
T ss_pred HHHHHHHHhCCcEEEecchHHHHhhhhhhcccccccchhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCccc
Confidence 7888899999998776531 1 110 1 2223445645
Q ss_pred -EEEEeeeCCCcc-c------cCCcccCCCCCCCC--------CeeEEecccCCchHHHHHHHhcccc
Q 030189 128 -AIFLGVRIGDPT-A------VGQEQFSPSSPGWP--------PFMRVNPILDWSYRLLINNKLFGFI 179 (181)
Q Consensus 128 -~~i~G~R~~es~-~------~~~~~~~~~~~~~~--------~~~~i~Pi~~Wt~~dVw~yi~~~~~ 179 (181)
.+++|+..+|.. . ++.... .+..+.. +...++||.+++.+||++|.++.++
T Consensus 366 ~~LatG~~~~D~iEs~~~~l~~g~~~i-ks~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~la~~lGl 432 (697)
T 2vxo_A 366 VFLAQGTLRPDLIESASLVASGKAELI-KTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGL 432 (697)
T ss_dssp EEEECCCSSCCSBCCHHHHHHSCCCGG-GSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTTC
T ss_pred EEEEEeccChhhhhhhhhhhhcCcccc-ccccccchhhHHhccCCEEEEecccCCHHHHHHHHHHcCC
Confidence 899999888742 1 110000 0000111 1247999999999999999998765
No 30
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.84 E-value=2.7e-08 Score=88.56 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
...++..+.....|+..++..+..+++|++|||.||+|++.|+.++... .++..|+++++..-++..
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~-------------~~v~~v~m~~~~~~~~~~ 370 (590)
T 3n05_A 304 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA-------------QNVYGVSMPSKYSSDHSK 370 (590)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG-------------GGEEEEECCCSSCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc-------------ccEEEEEECCCCCCHHHH
Confidence 4456666677777888887777679999999999999999999887420 358889999887778888
Q ss_pred HHHHHHhhhcCceEEEEccc--HHH----------------------HHHHHHHhCCCcEEEEeeeCCCccccCCcccCC
Q 030189 93 SFTYDTASKYVLQLDIIRSD--FKS----------------------GLEALLNAKPIRAIFLGVRIGDPTAVGQEQFSP 148 (181)
Q Consensus 93 ~f~~~~~~~~~l~~~~~~~~--~k~----------------------~l~~~~~~~~~~~~i~G~R~~es~~~~~~~~~~ 148 (181)
+.++++++.+|++++++.-+ +.. .+..+.++.+..++.|| ..+|.... ....
T Consensus 371 ~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~G---y~t~ 446 (590)
T 3n05_A 371 GDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVG---YSTL 446 (590)
T ss_dssp HHHHHHHHHHTCEEEECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHT---CCCS
T ss_pred HHHHHHHHHcCCcEEEEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcC---chhh
Confidence 99999999999998887642 110 12333445577778888 44453211 1111
Q ss_pred CCCCCCCeeEEecccCCchHHHHHHHhcc
Q 030189 149 SSPGWPPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 149 ~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
.. ...--++||.+++..+|+...++.
T Consensus 447 ~g---d~~~~~~Pl~~l~K~eVr~la~~l 472 (590)
T 3n05_A 447 YG---DSVGAYGPIKDVYKTSIFRLAEWR 472 (590)
T ss_dssp SC---TTSCSBCTTTTSCHHHHHHHHHHH
T ss_pred cC---CCccceeecCCCcHHHHHHHHHHh
Confidence 11 112248999999999999987764
No 31
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=98.66 E-value=3e-07 Score=74.32 Aligned_cols=150 Identities=10% Similarity=-0.008 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 14 RLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
..++.+......|+..++..+...++|++|||.||+|++.|+.++......+ ++ ..++.+++++.+... ..+
T Consensus 17 ~~~~~i~~~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~----~~--~~~v~av~~~~~~~~--d~~ 88 (271)
T 1kqp_A 17 DPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREE----GG--DAQFIAVRLPHGTQQ--DED 88 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT----TC--CCEEEEEECCSSSCT--THH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHHHHHHHhccc----CC--CceEEEEEeCCCCCC--CHH
Confidence 4556666677888888877776789999999999999999998875211100 00 013556777655432 366
Q ss_pred HHHHHhhhcCc-eEEEEccc--HH---HH-------------------------HHHHHHhCCCcEEEEeeeCCCccccC
Q 030189 94 FTYDTASKYVL-QLDIIRSD--FK---SG-------------------------LEALLNAKPIRAIFLGVRIGDPTAVG 142 (181)
Q Consensus 94 f~~~~~~~~~l-~~~~~~~~--~k---~~-------------------------l~~~~~~~~~~~~i~G~R~~es~~~~ 142 (181)
..+++++.+|+ +.+++.-+ +. +. +..+....+.. ++.+-..+|... +
T Consensus 89 ~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~l-vl~tgn~~E~~~-G 166 (271)
T 1kqp_A 89 DAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLL-VLGTDHAAEAVT-G 166 (271)
T ss_dssp HHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCE-EBCCCCHHHHTT-T
T ss_pred HHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCE-EEECccHHHhcc-C
Confidence 78889999998 77766521 11 00 11112233433 333334444321 1
Q ss_pred CcccCCCCCCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 143 QEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 143 ~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
...... ...--++||.+++..||+...++.+
T Consensus 167 --y~t~~g---d~~~~~~Pl~~l~K~eVr~la~~lg 197 (271)
T 1kqp_A 167 --FFTKYG---DGGADLLPLTGLTKRQGRTLLKELG 197 (271)
T ss_dssp --CSCTTT---TTCCSBCTTTTCCHHHHHHHHHHTT
T ss_pred --Cccccc---cccccccccccCCHHHHHHHHHHcC
Confidence 111110 1123489999999999999887754
No 32
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.64 E-value=3.9e-08 Score=84.06 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=84.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc-eEEEEccc--
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL-QLDIIRSD-- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l-~~~~~~~~-- 112 (181)
++++|+||||.||+|++.++.+.. .++.++++|.|.. .| .+.+++.++.+|+ ++.++...
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G---------------~eViavt~d~Gq~-~E-le~A~~vA~~lGi~~~~VvDl~ee 77 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG---------------FDVIAYVANVGQK-DD-FVAIKEKALKTGASKVYVEDLRRE 77 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT---------------CEEEEEEEESSCC-CC-HHHHHHHHHHHTCSEEEEEECHHH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC---------------CeEEEEEEEcCCH-HH-HHHHHHHHHHcCCceEEEEecHHH
Confidence 689999999999999999998763 4688899999974 33 4568888999999 77776532
Q ss_pred HH-------------------------H-----HHHHHHHhCCCcEEEEeeeCCC-ccccCCcccCCCCCCCCCeeEEec
Q 030189 113 FK-------------------------S-----GLEALLNAKPIRAIFLGVRIGD-PTAVGQEQFSPSSPGWPPFMRVNP 161 (181)
Q Consensus 113 ~k-------------------------~-----~l~~~~~~~~~~~~i~G~R~~e-s~~~~~~~~~~~~~~~~~~~~i~P 161 (181)
|. + .+.++.++.|.+.+++|+.... ...+-...+...+ |+.-.+.|
T Consensus 78 f~~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~~~al~---p~~~IiaP 154 (421)
T 1vl2_A 78 FVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALN---PNLKVISP 154 (421)
T ss_dssp HHHHTHHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHC---TTSEEECG
T ss_pred HHHhhhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHHHHHHHhcC---CCCeEEcc
Confidence 21 0 1334455678999999998631 1111100111111 24556899
Q ss_pred ccC-------CchHHHHHHHhcccc
Q 030189 162 ILD-------WSYRLLINNKLFGFI 179 (181)
Q Consensus 162 i~~-------Wt~~dVw~yi~~~~~ 179 (181)
+.+ ++..||.+|..++++
T Consensus 155 l~d~~~l~~~lsK~Eir~~A~e~Gl 179 (421)
T 1vl2_A 155 WKDPEFLAKFKGRTDLINYAMEKGI 179 (421)
T ss_dssp GGCHHHHHHTC--CHHHHHHHHHTC
T ss_pred cCchhhccccCCHHHHHHHHHHcCC
Confidence 999 599999999998876
No 33
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.62 E-value=5.8e-07 Score=72.84 Aligned_cols=153 Identities=11% Similarity=0.079 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHH
Q 030189 13 RRLKTKYNNAINVIQRTLALYS-IEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEI 91 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~-~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~ 91 (181)
-..++.+...+..|+..++..+ ..+++|++|||.||+|++.|+..+......+. +....++.++++..+.. ..
T Consensus 17 ~~~~~~i~~~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~----~~~~~~v~av~~~~~~~--~~ 90 (275)
T 1wxi_A 17 INAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLET----GNESLQFIAVRLPYGVQ--AD 90 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHH----CCTTCEEEEEECCSSSC--TT
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhcccc----ccccceEEEEEeCCCCc--cC
Confidence 3456666777888998888877 67899999999999999999988852110000 00001466677765532 23
Q ss_pred HHHHHHHhhhcCc-eEEEEccc--HHH---------------------------HHHHHHHhCCCcEEEEeeeCCCcccc
Q 030189 92 NSFTYDTASKYVL-QLDIIRSD--FKS---------------------------GLEALLNAKPIRAIFLGVRIGDPTAV 141 (181)
Q Consensus 92 ~~f~~~~~~~~~l-~~~~~~~~--~k~---------------------------~l~~~~~~~~~~~~i~G~R~~es~~~ 141 (181)
.+..+++++.+|+ +..++.-+ +.. .+..+....+..++-|| ..+|...
T Consensus 91 ~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~- 168 (275)
T 1wxi_A 91 EQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAIT- 168 (275)
T ss_dssp HHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTT-
T ss_pred HHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHcc-
Confidence 6668888999998 77776421 110 01122223443333333 2233211
Q ss_pred CCcccCCCCCCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 142 GQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
+ .+.... ...--++||.+.+..||+...++.+
T Consensus 169 G--y~t~~g---d~~~~~~PL~~l~K~eVr~la~~lg 200 (275)
T 1wxi_A 169 G--FFTKYG---DGGTDINPLYRLNKRQGKQLLAALA 200 (275)
T ss_dssp T--CSCTTT---TTCCSBCTTTTCCHHHHHHHHHHTT
T ss_pred C--cccccC---CCccceeeccCCCHHHHHHHHHHhC
Confidence 1 111110 1123489999999999999887754
No 34
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=98.58 E-value=5.5e-08 Score=80.07 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=82.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhc-------CceEEE
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKY-------VLQLDI 108 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~-------~l~~~~ 108 (181)
.++++++|| .||+|+++++.+.. .++.++|++++. .-.+.+.++++.+ ++++++
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G---------------~~v~~v~~~~~~---~~~~~a~~~a~~l~~~~~~~~i~~~v 240 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG---------------VEVIPVYIGKDD---KNLEKVRSLWNLLKRYSYGSKGFLVV 240 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT---------------CEEEEEEESCSS---HHHHHHHHHHHHHHTTCTTSCCCCEE
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC---------------CeEEEEEEEECH---HHHHHHHHHHHHHhhhccCCCCcEEE
Confidence 478999999 99999999998763 468889999654 2355566666666 777777
Q ss_pred EcccHHHHHHHHHHhCCCcEEEEeeeCCCccccC--CcccCCCCCCCCCeeEEecccCCchHHHHHHHhcc
Q 030189 109 IRSDFKSGLEALLNAKPIRAIFLGVRIGDPTAVG--QEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 109 ~~~~~k~~l~~~~~~~~~~~~i~G~R~~es~~~~--~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
+.+ +.+.+ ++.++.+.+.++||+..+|-.... +...... .....++||..++..||.++..+.
T Consensus 241 v~~-~~~~~-~~A~~~ga~~I~tG~~~~~~~~qt~~l~~~~~~----~~~~vl~PL~~~~K~eI~~~a~~i 305 (307)
T 1vbk_A 241 AES-FDRVL-KLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKM----FPVPVYYPLIALPEEYIKSVKERL 305 (307)
T ss_dssp ESS-HHHHH-HHHHHHTCCEEECCCCGGGCCTTCHHHHHHHHH----CSSCEECHHHHSCHHHHHHHHHHH
T ss_pred eCC-CHHHH-HHHHHcCCCEEEECcccchhccccHHHhhhccC----cCCeEEEccCCCCHHHHHHHHHHc
Confidence 762 55444 666777899999999876521111 2111111 123468999999999999998764
No 35
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.55 E-value=9.1e-08 Score=76.04 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=76.5
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-----c-hHHHHHHHHHhhhcCceEEEEc
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-----F-PEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-----f-pe~~~f~~~~~~~~~l~~~~~~ 110 (181)
++++++||||||++.++++.+.. .++..++...+.. | ..-.+.++..++.+|+++.++.
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G---------------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~ 70 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR---------------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGF 70 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT---------------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEE
T ss_pred EEEEEecCcHHHHHHHHHHHHcC---------------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEE
Confidence 68999999999999999988753 2455554443321 1 0113457778999999998876
Q ss_pred cc-----HHHHHHHHHHhCCCcEEEEeeeCCCccccCCc-ccCCCCCCCCCeeEEecccCCchHHHHHHHh
Q 030189 111 SD-----FKSGLEALLNAKPIRAIFLGVRIGDPTAVGQE-QFSPSSPGWPPFMRVNPILDWSYRLLINNKL 175 (181)
Q Consensus 111 ~~-----~k~~l~~~~~~~~~~~~i~G~R~~es~~~~~~-~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~ 175 (181)
-+ ..+.|.+.+++.+..+++.|.-..+..+.... ...+ -+..-+.||......++..=+.
T Consensus 71 ~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~s~yqr~r~e~vc~~-----~gl~~~~PLW~~d~~~Ll~e~i 136 (237)
T 3rjz_A 71 TQGEKEKEVEDLKRVLSGLKIQGIVAGALASKYQRKRIEKVAKE-----LGLEVYTPAWGRDAKEYMRELL 136 (237)
T ss_dssp C------CHHHHHHHHTTSCCSEEECC---CCSHHHHHHHHHHH-----TTCEEECSSSSCCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcCCcEEEECCcchHHHHHHHHHHHHH-----cCCEEEccccCCCHHHHHHHHH
Confidence 43 23577788877788999999998876543222 2222 1355678888777777655443
No 36
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.34 E-value=2.6e-06 Score=69.35 Aligned_cols=147 Identities=11% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF 94 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f 94 (181)
-++.++..+..|+..++..|..+++|++|||.||+|+++|+..+....... + .+..++.+......+...+-
T Consensus 26 ~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~-----~---~~~~viav~~p~~~~~~~~d 97 (285)
T 3dpi_A 26 ARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS-----G---YDARFVAMRLPYGAQHDEAD 97 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT-----T---CCCEEEEEECCSCC---CHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc-----C---cccEEEEEEcCCCCHHHHHH
Confidence 456677888999999988887899999999999999999988764321110 0 11234444443333344556
Q ss_pred HHHHhhhcC-ceEEEEcc--cHH---H-----------------------------HHHHHHHhCCCcEEEEee-eCCCc
Q 030189 95 TYDTASKYV-LQLDIIRS--DFK---S-----------------------------GLEALLNAKPIRAIFLGV-RIGDP 138 (181)
Q Consensus 95 ~~~~~~~~~-l~~~~~~~--~~k---~-----------------------------~l~~~~~~~~~~~~i~G~-R~~es 138 (181)
.+++++.+| ++.+++.- -+. + .|..+....| .+++|. +++|.
T Consensus 98 A~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g--~lVlgTgn~sE~ 175 (285)
T 3dpi_A 98 ARRALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARN--GVVIGTDHAAES 175 (285)
T ss_dssp HHHHHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEBCCCCHHHH
T ss_pred HHHHHHHcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCC--CEEEeCccHHhh
Confidence 777888888 67777652 111 0 0112222333 455555 33332
Q ss_pred cccCCcccCC-CCCCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 139 TAVGQEQFSP-SSPGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
. ..++.. .| +..-++||.+.+..||+...++.+
T Consensus 176 ~---~Gy~T~~GD----~~~~~~Pl~~l~K~eV~~la~~lg 209 (285)
T 3dpi_A 176 V---MGFFTKFGD----GGADVLPLAGLTKRRVRALARMLG 209 (285)
T ss_dssp H---HHHHHCCCC----CCCSBCTTTTCCHHHHHHHHHHTT
T ss_pred h---CCcccccCC----CceeEeeecCCcHHHHHHHHHHcC
Confidence 1 111111 12 123589999999999999887654
No 37
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.28 E-value=3.2e-06 Score=68.67 Aligned_cols=152 Identities=9% Similarity=0.024 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHH
Q 030189 13 RRLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEIN 92 (181)
Q Consensus 13 ~~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~ 92 (181)
-..++.++..+..|+..++..+...++|++|||.||++++.|+.++......+ .++...++.++.+..+. ++..
T Consensus 18 ~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~----~~~~~~~v~av~~p~~~--~~~~ 91 (279)
T 3q4g_A 18 IDPQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQ----HNTTEYQFIAVRLPYGE--QKDE 91 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHH----TTCSCCEEEEEECCSSS--CSCH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcc----cccCCceEEEEEecCCC--hHHH
Confidence 33566677778889988888877899999999999999999988774311100 00000245566666443 2235
Q ss_pred HHHHHHhhhcCc-eEEEEcc--cHHH-------H-----------------------------HHHHHHhCCCcEEEEee
Q 030189 93 SFTYDTASKYVL-QLDIIRS--DFKS-------G-----------------------------LEALLNAKPIRAIFLGV 133 (181)
Q Consensus 93 ~f~~~~~~~~~l-~~~~~~~--~~k~-------~-----------------------------l~~~~~~~~~~~~i~G~ 133 (181)
+..+++++.+|+ +..++.- .+.. . |-.+....| .+++|.
T Consensus 92 ~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g--~lVlgT 169 (279)
T 3q4g_A 92 DEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVG--GLVLGT 169 (279)
T ss_dssp HHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHT--EEEBCC
T ss_pred HHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCC--CEEecC
Confidence 678888999999 7766652 1111 0 111112223 356664
Q ss_pred -eCCCccccCCcccCCCCCCCCCeeEEecccCCchHHHHHHHhccc
Q 030189 134 -RIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 134 -R~~es~~~~~~~~~~~~~~~~~~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
+++|... ..+.... .+..-++||.+.+..+|+...++.+
T Consensus 170 gn~sE~~~---Gy~TkyG---D~~~di~Pl~dl~Kt~Vr~LA~~lg 209 (279)
T 3q4g_A 170 DHSAENIT---GFYTKFG---DGACDLAPLFGLNKRQVRLLAKTLG 209 (279)
T ss_dssp CCHHHHHH---TCSCTTT---TTCCSBCTTTTCCHHHHHHHHHHTT
T ss_pred ccHHhhhc---cchhhcC---CcccceeecCCCcHHHHHHHHHHhC
Confidence 4444321 1222111 1223599999999999999987754
No 38
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.09 E-value=1.1e-05 Score=72.89 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHH
Q 030189 17 TKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTY 96 (181)
Q Consensus 17 ~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~ 96 (181)
+..+.....|+..++..+..+++|++|||.||+|++.|+.++..... ....++.+|++++...-+++.+-.+
T Consensus 343 ~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg--------~~~~~v~~v~m~~~~~~~~~~~~A~ 414 (680)
T 3sdb_A 343 EAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREG--------RPRSDILAFALPGFATGEHTKNNAI 414 (680)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTT--------CCGGGEEEEECCC--------CHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhC--------CCCceEEEEEECCCCCCHHHHHHHH
Confidence 33444456677777777767899999999999999998887753211 0013577888887655567788899
Q ss_pred HHhhhcCceEEEEcc
Q 030189 97 DTASKYVLQLDIIRS 111 (181)
Q Consensus 97 ~~~~~~~l~~~~~~~ 111 (181)
++++.+|++++++.-
T Consensus 415 ~la~~lgi~~~~i~i 429 (680)
T 3sdb_A 415 KLARALGVTFSEIDI 429 (680)
T ss_dssp HHHHHHTCEEEECCC
T ss_pred HHHHHcCCCEEEEEC
Confidence 999999999877763
No 39
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=97.71 E-value=0.00016 Score=63.29 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 16 KTKYNNAINVIQRTLALY--SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~--~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
++.+++..+.++++++.. ...++.+.+|||.||++++.|+.+.. .++.++.+.... .+| .+
T Consensus 220 ~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~---------------~~v~tfti~~~~-~~E-~~ 282 (513)
T 1jgt_A 220 GEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA---------------GELDTVSMGTDT-SNE-FR 282 (513)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH---------------SSCEEEEEECSS-CCC-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC---------------CCceEEEcCCCC-CCH-HH
Confidence 444445555566665542 22589999999999999999998864 246677765432 333 46
Q ss_pred HHHHHhhhcCceEEEEcccHH-------H---------H--------HHHHHH--hCCCcEEEEeeeCCCcc
Q 030189 94 FTYDTASKYVLQLDIIRSDFK-------S---------G--------LEALLN--AKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~~~k-------~---------~--------l~~~~~--~~~~~~~i~G~R~~es~ 139 (181)
+.+++++.+|++.+++..+-. + + +.-+.+ +.+.+++++|.-.||-.
T Consensus 283 ~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~g~~VvltG~GaDElf 354 (513)
T 1jgt_A 283 EARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRALDGPERRILTGYGADIPL 354 (513)
T ss_dssp HHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCSSCCEEECCTTTHHHH
T ss_pred HHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHcCCCEEEeCCChhhcc
Confidence 788999999999887654311 0 1 111111 35688999999888853
No 40
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=97.64 E-value=0.00037 Score=61.51 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=62.3
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHH-
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFK- 114 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k- 114 (181)
.++.+.+|||.||++++.++.+........ ...+..-..++..+.+.... .+| .++.+++++.+|++.+++..+..
T Consensus 227 vpvgv~LSGGlDSS~iaala~~~~~~~~~~-~~~~~a~~~~l~tfsig~~~-~~E-~~~A~~vA~~lg~~h~~i~~~~~~ 303 (553)
T 1ct9_A 227 VPYGVLLSGGLDSSIISAITKKYAARRVED-QERSEAWWPQLHSFAVGLPG-SPD-LKAAQEVANHLGTVHHEIHFTVQE 303 (553)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHC-----------------CEEEEEESTT-CHH-HHHHHHHHHHHTCEEEEEECCHHH
T ss_pred CceEEeCCCCccHHHHHHHHHHhhcccccc-ccccccccCceeEEEecCCC-CcH-HHHHHHHHHHhCCCCEEEECCHHH
Confidence 589999999999999999998864210000 00000000125666664322 255 56789999999999877664311
Q ss_pred ------H--------------------HHHHHHHhCCCcEEEEeeeCCCcc
Q 030189 115 ------S--------------------GLEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 115 ------~--------------------~l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
+ .+.+.+++.+.+++++|.-.||-.
T Consensus 304 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElf 354 (553)
T 1ct9_A 304 GLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVF 354 (553)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHcCCeEEEECCCchhcc
Confidence 0 123334567899999999998843
No 41
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=97.56 E-value=0.00038 Score=62.36 Aligned_cols=86 Identities=13% Similarity=0.012 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCceEEEecCchhHHHHHHHHH-------HHhhhhc------C---CCCCCCCCCCCC----------
Q 030189 23 INVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLR-------AGYFLHK------G---EQSCSNGSLTFP---------- 76 (181)
Q Consensus 23 ~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~-------~~~~~~~------~---~~~~~~~~~~~~---------- 76 (181)
...|+..+++-+..+++|+.|||.||+|++.|+. ++..... + ...+ +.....
T Consensus 291 ~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 368 (634)
T 3ilv_A 291 SLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLP--ALQHLPFEEQAKKITA 368 (634)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSS--CSSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccc--cccccccccchhHhhh
Confidence 4556666777777899999999999999888843 3321100 0 0000 000000
Q ss_pred --ceEEEecCCCCchHHHHHHHHHhhhcCceEEEEc
Q 030189 77 --IRTIYFESNSAFPEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 77 --~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~ 110 (181)
+..+|..+...-++..+-.+++++.+|++..++.
T Consensus 369 ~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~Id 404 (634)
T 3ilv_A 369 VFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWS 404 (634)
T ss_dssp HHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEc
Confidence 5678887666667888889999999999987776
No 42
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=97.38 E-value=0.00029 Score=61.48 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 16 KTKYNNAINVIQRTLALY--SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 16 ~~~~~~a~~~i~~~~~~~--~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
++.++...+.++++++.. ...++.+.+|||.||++++.++.+.. .++.++.+... ..+| .+
T Consensus 217 ~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~~---------------~~~~~~t~~~~-~~~E-~~ 279 (503)
T 1q15_A 217 EPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHF---------------KKLNTYSIGTE-LSNE-FE 279 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTTC---------------SEEEEEEEEET-TBCC-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHhC---------------CCcEEEEEeCC-CccH-HH
Confidence 344444445555555431 22579999999999999999887652 24566665532 1233 46
Q ss_pred HHHHHhhhcCceEEEEcccHH---H-------------H-----------HHHHHHhCCCcEEEEeeeCCCcc
Q 030189 94 FTYDTASKYVLQLDIIRSDFK---S-------------G-----------LEALLNAKPIRAIFLGVRIGDPT 139 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~~~k---~-------------~-----------l~~~~~~~~~~~~i~G~R~~es~ 139 (181)
+.+++++.+|++.+++..+-. + | +.+.. +.+.+++++|.-.||-.
T Consensus 280 ~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~~~~VvltG~GaDElf 351 (503)
T 1q15_A 280 FSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQA-QGQVSCMLTGYGSDLLF 351 (503)
T ss_dssp HHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-BTTBSEEECCTTHHHHH
T ss_pred HHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HCCCCEEEeCCChhhhc
Confidence 788899999999877664311 0 1 12222 35688999999998854
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.28 E-value=0.0065 Score=53.68 Aligned_cols=132 Identities=16% Similarity=0.075 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCc
Q 030189 25 VIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVL 104 (181)
Q Consensus 25 ~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l 104 (181)
-|+.-+++-+...++|+.|||.||++++-|+..++.. .++..++.-+....+++.+-...+++.+|+
T Consensus 290 gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~-------------~~v~~v~mp~~~ts~~t~~~a~~la~~lg~ 356 (565)
T 4f4h_A 290 GVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA-------------ERVRAVMMPSRYTAGISTTDAADMARRVGV 356 (565)
T ss_dssp HHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG-------------GGEEEEECCCTTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC-------------ccEEEEeccccccccchHHHHHHHHHHhCC
Confidence 4555566656678999999999999999999888631 357777777777778999999999999999
Q ss_pred eEEEEccc--HH-------------------H---------HHHHHHHhCCCcEEEEee-eCCCccccCCcccCCCCCCC
Q 030189 105 QLDIIRSD--FK-------------------S---------GLEALLNAKPIRAIFLGV-RIGDPTAVGQEQFSPSSPGW 153 (181)
Q Consensus 105 ~~~~~~~~--~k-------------------~---------~l~~~~~~~~~~~~i~G~-R~~es~~~~~~~~~~~~~~~ 153 (181)
....+.-+ +. + -|-.+.+..|. +++|. .++|... .+......
T Consensus 357 ~~~~i~i~~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~--lvlgTgn~sE~a~---Gy~T~~Gd-- 429 (565)
T 4f4h_A 357 RYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGS--IVLTTGNKSEMAV---GYCTLYGD-- 429 (565)
T ss_dssp EEEECCCHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCC--EEEECCCHHHHHH---TCSCTTTT--
T ss_pred ceeeeecchHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCC--cccCCCchhhHhh---ccccccCC--
Confidence 98877531 10 0 12222333333 34443 3334211 12222111
Q ss_pred CCeeEEecccCCchHHHHHHHhcc
Q 030189 154 PPFMRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 154 ~~~~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
..--++||.+-...+|+..+++.
T Consensus 430 -~~~~~~pi~~l~Kt~v~~l~~~~ 452 (565)
T 4f4h_A 430 -MAGGFAVIKDIAKTLVYRLCRYR 452 (565)
T ss_dssp -TCSSEETTTTCCHHHHHHHHHHH
T ss_pred -cccCchhccCccHHHHHHHHHHH
Confidence 12358999999999999987763
No 44
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=95.89 E-value=0.15 Score=35.73 Aligned_cols=91 Identities=5% Similarity=0.000 Sum_probs=61.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC----------------c-----hHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA----------------F-----PEINSF 94 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~----------------f-----pe~~~f 94 (181)
.+|.|++.|...|.-++..+........ .++.++|+..... + .+..+.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIG-----------ARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQK 75 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHT-----------CEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC-----------CEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHH
Confidence 6899999999999888887776643211 3577777654321 1 234455
Q ss_pred HHHHhhhcCce---EEEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 95 TYDTASKYVLQ---LDIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 95 ~~~~~~~~~l~---~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
++++.+.+|++ ..+...+..+.+-++.++.+.+.+|+|.|...
T Consensus 76 l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~ 121 (150)
T 3tnj_A 76 LSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRH 121 (150)
T ss_dssp HHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---
T ss_pred HHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 66677777765 34455667788888888889999999998644
No 45
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=94.93 E-value=0.27 Score=34.06 Aligned_cols=89 Identities=7% Similarity=0.143 Sum_probs=59.4
Q ss_pred CceEEEecCchh--HHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-c------------------hHHHHH
Q 030189 36 EEVAFSFNGGKD--STVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-F------------------PEINSF 94 (181)
Q Consensus 36 ~~i~va~SGGKD--S~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-f------------------pe~~~f 94 (181)
.+|.|++.|... |.-++..+........ .++.++|+..... + .+..+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDD-----------AEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQ 70 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHT-----------CEEEEEEEECC----------------CHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcC-----------CeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHH
Confidence 579999999998 8777776665533211 3577777764421 1 123344
Q ss_pred HHHHhhhcCc-----eEEEEcccHHHHHHHHHHhCCCcEEEEeeeC
Q 030189 95 TYDTASKYVL-----QLDIIRSDFKSGLEALLNAKPIRAIFLGVRI 135 (181)
Q Consensus 95 ~~~~~~~~~l-----~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~ 135 (181)
++++.+.+++ ...+...+..+.+.++.++.+.+.+++|.|+
T Consensus 71 l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~ 116 (143)
T 3fdx_A 71 LKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR 116 (143)
T ss_dssp HHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC
Confidence 5666667764 3344555777888889988899999999995
No 46
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=94.86 E-value=0.38 Score=33.22 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=60.6
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec-C-CC---C-------------chHHHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE-S-NS---A-------------FPEINSFTYD 97 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id-t-g~---~-------------fpe~~~f~~~ 97 (181)
.+|.|++.|...|..++..+........ .++.++|+. . +. . -.+..+.+++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 71 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHD-----------AKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLD 71 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHT-----------CEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcC-----------CEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 5799999999999887776665543211 357777775 2 21 0 1234556677
Q ss_pred HhhhcCceE---EEEcccHHHHHHHHHHhCCCcEEEEeee
Q 030189 98 TASKYVLQL---DIIRSDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 98 ~~~~~~l~~---~~~~~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
+.+.+|++. .+...+..+.+-++.++.+.+.+|+|.|
T Consensus 72 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 72 LAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp HHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 777777764 3344566778888888889999999998
No 47
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=94.60 E-value=0.7 Score=31.77 Aligned_cols=91 Identities=8% Similarity=0.039 Sum_probs=59.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC--c----h---------HHHHHHHHHhh
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA--F----P---------EINSFTYDTAS 100 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~--f----p---------e~~~f~~~~~~ 100 (181)
.+|.|++.|...|.-++..+........ .++.++|+..... + + +..+.++++.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHG-----------ARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARA 71 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHT-----------CEEEEEEEECC--------------CHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC-----------CEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999887776665543211 3577777754321 1 1 12334445444
Q ss_pred hcCc---eEEEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 101 KYVL---QLDIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 101 ~~~l---~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
..|+ ...+...+..+.+-++.++.+.+.+++|.|...
T Consensus 72 ~~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~ 111 (137)
T 2z08_A 72 LTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLG 111 (137)
T ss_dssp HHCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTT
T ss_pred HcCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCc
Confidence 4565 345555677788888998889999999998644
No 48
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=94.47 E-value=0.72 Score=36.18 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=62.6
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceE--EEEcccH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQL--DIIRSDF 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~--~~~~~~~ 113 (181)
.+|++++.|...|.-++..+........ .++.++++.....-.+..+-+.+..+..|+++ .+...+.
T Consensus 171 ~~Ilv~~d~s~~s~~al~~a~~la~~~~-----------~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~ 239 (294)
T 3loq_A 171 DRVLVAYDFSKWADRALEYAKFVVKKTG-----------GELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTP 239 (294)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHT-----------CEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHhhhcC-----------CEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCH
Confidence 6899999999999888887776543211 36888998765432333333333334456664 4445677
Q ss_pred HHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 114 KSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 114 k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
.+.+.++.++.+.+++++|.+.-.
T Consensus 240 ~~~I~~~a~~~~~dLlV~G~~~~~ 263 (294)
T 3loq_A 240 HKAILAKREEINATTIFMGSRGAG 263 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHHHhcCcCEEEEeCCCCC
Confidence 888999999889999999998644
No 49
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=92.61 E-value=1.8 Score=30.99 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=57.1
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEE--EecCCCCc----------------hHHHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTI--YFESNSAF----------------PEINSFTYD 97 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v--~idtg~~f----------------pe~~~f~~~ 97 (181)
.+|+|++.|...|..++..+..... .. .++.++ |+.....+ .+..+.+++
T Consensus 18 ~~ILv~vD~s~~s~~al~~A~~lA~-~~-----------a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (163)
T 1tq8_A 18 KTVVVGTDGSDSSMRAVDRAAQIAG-AD-----------AKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHD 85 (163)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHT-TT-----------SEEEEEEECCC--------------------CCTHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHhC-CC-----------CEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHH
Confidence 6899999999999988887766542 11 357777 65322111 011222333
Q ss_pred H---hhhcCce-E--EEEcccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 98 T---ASKYVLQ-L--DIIRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 98 ~---~~~~~l~-~--~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
+ .+..|++ + .+...+..+.+-++.++.+.+++|+|.|....
T Consensus 86 ~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~ 132 (163)
T 1tq8_A 86 AKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLST 132 (163)
T ss_dssp HHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCS
T ss_pred HHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCc
Confidence 2 2345665 4 44555667788888888899999999986543
No 50
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=92.46 E-value=1.4 Score=34.51 Aligned_cols=92 Identities=9% Similarity=0.019 Sum_probs=61.4
Q ss_pred CceEEEecCchh-------HHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--------------hHHHHH
Q 030189 36 EEVAFSFNGGKD-------STVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--------------PEINSF 94 (181)
Q Consensus 36 ~~i~va~SGGKD-------S~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--------------pe~~~f 94 (181)
.+|++++.|... |.-++..+........ .++.++|+...... .+..+.
T Consensus 135 ~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T 3mt0_A 135 GKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK-----------ATLHVISAHPSPMLSSADPTFQLSETIEARYREA 203 (290)
T ss_dssp CEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT-----------CEEEEEEEEC---------CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC-----------CeEEEEEEecCccccccCchhHHHHHHHHHHHHH
Confidence 689999999987 6766666655533111 35788887654221 123345
Q ss_pred HHHHhhhcCce---EEEEcccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 95 TYDTASKYVLQ---LDIIRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 95 ~~~~~~~~~l~---~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
++++.+++|++ ..+...+..+.+.++.++.+.+.+++|.|.-..
T Consensus 204 l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~ 250 (290)
T 3mt0_A 204 CRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTG 250 (290)
T ss_dssp HHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCC
T ss_pred HHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcC
Confidence 56667777773 355566777888899988889999999986543
No 51
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=92.41 E-value=2 Score=30.09 Aligned_cols=92 Identities=7% Similarity=0.052 Sum_probs=59.4
Q ss_pred CceEEEec--CchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc------h---------HHHHHHHHH
Q 030189 36 EEVAFSFN--GGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF------P---------EINSFTYDT 98 (181)
Q Consensus 36 ~~i~va~S--GGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f------p---------e~~~f~~~~ 98 (181)
.+|.|++. |...|.-++..+........ .++.++|+-....+ + +..+.++++
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDYD-----------VPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEY 84 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHHT-----------CCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhcC-----------CEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 68999999 99999988887776543221 36888887654321 1 122223333
Q ss_pred ---hhhcCce-E--EEEc-ccHHHHHHHH-HHhCCCcEEEEeeeCCCc
Q 030189 99 ---ASKYVLQ-L--DIIR-SDFKSGLEAL-LNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 99 ---~~~~~l~-~--~~~~-~~~k~~l~~~-~~~~~~~~~i~G~R~~es 138 (181)
.+..|++ + .+.. .+..+.+-++ .++.+.+.+++|.|....
T Consensus 85 ~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~ 132 (156)
T 3fg9_A 85 VQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFP 132 (156)
T ss_dssp HHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCT
T ss_pred HHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCc
Confidence 3345662 3 4445 6677788887 778889999999986543
No 52
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=92.23 E-value=1.9 Score=29.59 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=58.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-----------------hHHHHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-----------------PEINSFTYDT 98 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-----------------pe~~~f~~~~ 98 (181)
.+|.|++.|...|.-++..+........ .++.++|+.....+ .+..+.++++
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQ-----------ANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQR 74 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHT-----------CEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcC-----------CEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888887766543211 35788887543221 0112223333
Q ss_pred h---hhcCc-e--EEEEcccHHHHHHH-HHHhCCCcEEEEeeeCCC
Q 030189 99 A---SKYVL-Q--LDIIRSDFKSGLEA-LLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 99 ~---~~~~l-~--~~~~~~~~k~~l~~-~~~~~~~~~~i~G~R~~e 137 (181)
. +..|+ + ..+...+..+.+-+ +.++.+.+.+|+|.|...
T Consensus 75 ~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~ 120 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTN 120 (146)
T ss_dssp HHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSS
T ss_pred HHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCC
Confidence 2 33456 4 34455566777777 888888999999988644
No 53
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=90.65 E-value=3.6 Score=32.29 Aligned_cols=94 Identities=7% Similarity=0.006 Sum_probs=60.8
Q ss_pred CceEEEecCchh-------HHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc------h-------------
Q 030189 36 EEVAFSFNGGKD-------STVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF------P------------- 89 (181)
Q Consensus 36 ~~i~va~SGGKD-------S~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f------p------------- 89 (181)
.+|+|++.|..+ |.-++..+......... ..++.++++...... |
T Consensus 157 ~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~---------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (319)
T 3olq_A 157 GTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQK---------DPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRG 227 (319)
T ss_dssp CEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCS---------SCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccC---------CCeEEEEEeecCcchhhhccCCcccHHHHHHHHHH
Confidence 689999999984 45555555544322100 136888887643211 1
Q ss_pred HHHHHHHHHhhhcCce---EEEEcccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 90 EINSFTYDTASKYVLQ---LDIIRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 90 e~~~f~~~~~~~~~l~---~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
+..+.++++.+++|+. .++...+..+.+.++.++.+.+++++|.|.-..
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~ 279 (319)
T 3olq_A 228 QHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTG 279 (319)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCS
T ss_pred HHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccC
Confidence 1244566666777763 455556677888999998889999999986443
No 54
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=90.53 E-value=3.4 Score=29.18 Aligned_cols=91 Identities=10% Similarity=0.057 Sum_probs=59.8
Q ss_pred CceEEEecC-chhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--h----HHHHHHHHH---hhhcCce
Q 030189 36 EEVAFSFNG-GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--P----EINSFTYDT---ASKYVLQ 105 (181)
Q Consensus 36 ~~i~va~SG-GKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--p----e~~~f~~~~---~~~~~l~ 105 (181)
.+|.|++.| ...|.-++..+........ .++.++++..+... . +..+.+++. .+..|++
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~-----------a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 93 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRG-----------VPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAE 93 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHT-----------CCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcC-----------CEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 689999999 9999888887776643221 36888888654221 1 222233332 2345666
Q ss_pred EEE---E-cccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 106 LDI---I-RSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 106 ~~~---~-~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
+.+ + ..+..+.+-++.++.+.+.+|+|.|...
T Consensus 94 ~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~ 129 (155)
T 3dlo_A 94 GEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRS 129 (155)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEEC
T ss_pred ceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 532 2 3467788888888889999999987643
No 55
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=90.31 E-value=3 Score=28.29 Aligned_cols=89 Identities=6% Similarity=0.021 Sum_probs=57.5
Q ss_pred CceEEEecCchhHHHHHHHHHHHh-hhhcCCCCCCCCCCCCCceEEEecCCCCc-----------------hHHHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGY-FLHKGEQSCSNGSLTFPIRTIYFESNSAF-----------------PEINSFTYD 97 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~-~~~~~~~~~~~~~~~~~~~~v~idtg~~f-----------------pe~~~f~~~ 97 (181)
.+|.|++.|...|.-++..+.... ... ..++.++|+...... .+..+.+++
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~-----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDA-----------DCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCT-----------TEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCC-----------CCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHH
Confidence 478999999999998888777764 311 135788887765432 222223333
Q ss_pred Hh---hhcCceE--EEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 98 TA---SKYVLQL--DIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 98 ~~---~~~~l~~--~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
+. +..|+++ .+...+..+.+-++.+ +.+.+++|.|...
T Consensus 71 ~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~ 113 (138)
T 3idf_A 71 FSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENS 113 (138)
T ss_dssp HHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTS
T ss_pred HHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcc
Confidence 32 2346554 4445566777777776 7999999998644
No 56
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=89.93 E-value=3.4 Score=28.26 Aligned_cols=92 Identities=7% Similarity=0.003 Sum_probs=59.6
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-----------------c----hHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-----------------F----PEINSF 94 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-----------------f----pe~~~f 94 (181)
.+|.|++.|...|.-++..+........ .++.++|+..... . .+..+.
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTG-----------AELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEI 71 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHC-----------CEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcC-----------CEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHH
Confidence 5899999999999888887776543221 3577788754321 0 122223
Q ss_pred HHHH---hhhcCceE-----EEEcccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 95 TYDT---ASKYVLQL-----DIIRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 95 ~~~~---~~~~~l~~-----~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
++++ .+..|+++ .+...+..+.+-++.++.+.+.+++|.|....
T Consensus 72 l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~ 123 (147)
T 3hgm_A 72 AVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNG 123 (147)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTC
T ss_pred HHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCcc
Confidence 3332 33446543 44455677888888888889999999986443
No 57
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=89.13 E-value=3.5 Score=28.86 Aligned_cols=91 Identities=7% Similarity=0.074 Sum_probs=56.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC--------C-------c-hH---------
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--------A-------F-PE--------- 90 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--------~-------f-pe--------- 90 (181)
.+|.|++.|...|.-++..+....... ..++.++|+.... . + |+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~-----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLK-----------AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELK 74 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSS-----------CCEEEEEEEEEGGGTC-----------------CHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc-----------CCeEEEEEEecCccccccccccccccccccccchhhhHHHHH
Confidence 689999999999998887776653210 1357777764221 1 1 21
Q ss_pred ------HHHHHHHHh---hhcCceEE--EEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 91 ------INSFTYDTA---SKYVLQLD--IIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 91 ------~~~f~~~~~---~~~~l~~~--~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
..+.++++. +..|+++. +...+..+.+-++.++.+.+.+|+|.|.-.
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~ 132 (162)
T 1mjh_A 75 NKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKT 132 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 112233332 23466643 344567778888888889999999998654
No 58
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=88.34 E-value=5.8 Score=30.77 Aligned_cols=91 Identities=8% Similarity=0.028 Sum_probs=61.9
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchH-HHHHHHHHhhhcCceEEE--E-cc
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPE-INSFTYDTASKYVLQLDI--I-RS 111 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe-~~~f~~~~~~~~~l~~~~--~-~~ 111 (181)
.+|.|++.|...|..++..+........ .++.++++..+....+ ..++.+.+ ...|+++.. . ..
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~~-----------a~l~ll~v~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~g 75 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVTQ-----------SHLHLLVCEKRRDHSAALNDLAQEL-REEGYSVSTNQAWKD 75 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHHC-----------CEEEEEEECSSSCCHHHHHHHHHHH-HHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhcC-----------CeEEEEEeeCcHHHHHHHHHHHHHH-hhCCCeEEEEEEeCC
Confidence 6899999999999888887776643221 3588888866433333 33333333 456777644 3 34
Q ss_pred cHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 112 DFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 112 ~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
+..+.+.++.++.+.+++|+|.+....
T Consensus 76 ~~~~~i~~~a~~~~~dliV~G~~~~~~ 102 (290)
T 3mt0_A 76 SLHQTIIAEQQAEGCGLIIKQHFPDNP 102 (290)
T ss_dssp SHHHHHHHHHHHHTCSEEEEECCCSCT
T ss_pred CHHHHHHHHHHhcCCCEEEEecccCCc
Confidence 567788888888889999999987553
No 59
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=87.33 E-value=6 Score=27.90 Aligned_cols=92 Identities=9% Similarity=-0.016 Sum_probs=57.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC-------Cch-------------------
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS-------AFP------------------- 89 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~-------~fp------------------- 89 (181)
.+|.|++.|..+|.-++..+....... ..++.++|+.... .++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~-----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKME-----------VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKE 74 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSC-----------CSEEEEEEEEETTGGGCCC------------CCTTSHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhc-----------CCEEEEEEEecCccccccccccccccccccccHHHHHHHHHH
Confidence 689999999999988887776653211 1356777754211 111
Q ss_pred HHHHHHHHHhh---hcCceE----EEEcccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 90 EINSFTYDTAS---KYVLQL----DIIRSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 90 e~~~f~~~~~~---~~~l~~----~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
+..+.++++.+ ..|+++ .+...+..+.+-++.++.+.+++|+|.|....
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~ 130 (170)
T 2dum_A 75 EASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLS 130 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 11223333322 346554 33445677788888888899999999986543
No 60
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=84.15 E-value=13 Score=28.96 Aligned_cols=89 Identities=11% Similarity=0.112 Sum_probs=55.7
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc--------hH----HHHHHHH----Hh
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF--------PE----INSFTYD----TA 99 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f--------pe----~~~f~~~----~~ 99 (181)
.+|+|++.|+..|..++..+........ .++.++++.....+ .+ ..+.+++ +.
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEASRRN-----------VDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQ 240 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHHHTT-----------CCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHH
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHhcC-----------CEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999888777666543111 36888888654221 11 2222333 33
Q ss_pred hhc-CceE--EEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 100 SKY-VLQL--DIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 100 ~~~-~l~~--~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
+.+ ++++ .+...+..+.+-++.+ +.+++++|.|.-.
T Consensus 241 ~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~ 279 (309)
T 3cis_A 241 ERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRG 279 (309)
T ss_dssp HHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSS
T ss_pred hhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCC
Confidence 332 5544 4455566677777775 7899999998643
No 61
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=77.72 E-value=13 Score=24.91 Aligned_cols=89 Identities=6% Similarity=-0.045 Sum_probs=56.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec-CC---C------Cch---H--------HHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE-SN---S------AFP---E--------INSF 94 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id-tg---~------~fp---e--------~~~f 94 (181)
.+|.|++.|...|.-++..+....... ..++.++|+. .. . .++ + ..+.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~-----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKL-----------GAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERR 73 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTT-----------CCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHc-----------CCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHH
Confidence 579999999999988877766654211 1357778765 31 0 011 1 1233
Q ss_pred HHHHhhh-----cC-ceEEEEcccHHHHHHHHHHhCCCcEEEEeeeCC
Q 030189 95 TYDTASK-----YV-LQLDIIRSDFKSGLEALLNAKPIRAIFLGVRIG 136 (181)
Q Consensus 95 ~~~~~~~-----~~-l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~ 136 (181)
++++ +. .| +...+...+..+.+-++.++.+.+.+++|.|..
T Consensus 74 l~~~-~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~ 120 (138)
T 1q77_A 74 LREV-WEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS 120 (138)
T ss_dssp HHHH-HHHHHSCCCCCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG
T ss_pred HHHH-HHHhhccCCcceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 3444 32 22 444555566777888888888899999998854
No 62
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=77.24 E-value=21 Score=27.71 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=57.2
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCc-------hH------------HHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAF-------PE------------INSFTY 96 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~f-------pe------------~~~f~~ 96 (181)
.+|.|+..|...|..++..+........ .++.++++-....+ ++ ..+.++
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRNG-----------GRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIK 76 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHHC-----------CEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHcC-----------CeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999888887766543221 35777776322111 11 122333
Q ss_pred HHhh---hcCceEE--EE-cccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 97 DTAS---KYVLQLD--II-RSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 97 ~~~~---~~~l~~~--~~-~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
++.+ ..|+++. +. ..+..+.+.++.++.+.+++|+|.|....
T Consensus 77 ~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~ 124 (319)
T 3olq_A 77 QQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDK 124 (319)
T ss_dssp HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--
T ss_pred HHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCch
Confidence 3333 3466553 34 55677778888877789999999997653
No 63
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=76.14 E-value=23 Score=26.76 Aligned_cols=83 Identities=12% Similarity=0.193 Sum_probs=52.0
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHH---hhhcCceEE--EEc
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDT---ASKYVLQLD--IIR 110 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~---~~~~~l~~~--~~~ 110 (181)
.+|++++.|+..|.-++..+........ .++.++++.... .+..+.++++ .+..|+++. +..
T Consensus 155 ~~ilv~~d~s~~~~~al~~a~~la~~~~-----------a~l~ll~v~~~~--~~~~~~l~~~~~~l~~~~~~~~~~~~~ 221 (268)
T 3ab8_A 155 EGALLGYDASESAVRALHALAPLARALG-----------LGVRVVSVHEDP--ARAEAWALEAEAYLRDHGVEASALVLG 221 (268)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHHT-----------CCEEEEEECSSH--HHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCHHHHHHHHHHHHhhhcCC-----------CEEEEEEEcCcH--HHHHHHHHHHHHHHHHcCCceEEEEeC
Confidence 5899999999999877776554422111 358888886542 1222222222 233466553 345
Q ss_pred ccHHHHHHHHHHhCCCcEEEEee
Q 030189 111 SDFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 111 ~~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
.+..+.+.++.++. +.+++|.
T Consensus 222 g~~~~~i~~~a~~~--dliV~G~ 242 (268)
T 3ab8_A 222 GDAADHLLRLQGPG--DLLALGA 242 (268)
T ss_dssp SCHHHHHHHHCCTT--EEEEEEC
T ss_pred CChHHHHHHHHHhC--CEEEECC
Confidence 56667777777765 9999999
No 64
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=70.59 E-value=1.6 Score=28.82 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=17.0
Q ss_pred ecccCCchHHHHHHHhccccC
Q 030189 160 NPILDWSYRLLINNKLFGFIG 180 (181)
Q Consensus 160 ~Pi~~Wt~~dVw~yi~~~~~~ 180 (181)
.++..||.+||-.||.....|
T Consensus 12 ~~v~~WsvedV~~wl~~~~~g 32 (89)
T 1pk1_B 12 SQPIDWTIEEVIQYIESNDNS 32 (89)
T ss_dssp CCGGGCCHHHHHHHHHHHCGG
T ss_pred CCchhCCHHHHHHHHHHHccc
Confidence 456699999999999887544
No 65
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=63.85 E-value=3.5 Score=27.60 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=18.0
Q ss_pred EEecccCCchHHHHHHHhccc
Q 030189 158 RVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 158 ~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
.-.|+..|+.+||-.|+....
T Consensus 13 ~~~~v~~Ws~edV~~WL~~~G 33 (97)
T 2d8c_A 13 TMKEVVYWSPKKVADWLLENA 33 (97)
T ss_dssp CCSCCSSCCTTHHHHHHHHTT
T ss_pred CCCchhhCCHHHHHHHHHHcC
Confidence 467899999999999998654
No 66
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=62.06 E-value=24 Score=27.11 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=55.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC---------chH--------HHHHHHHH
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA---------FPE--------INSFTYDT 98 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~---------fpe--------~~~f~~~~ 98 (181)
.+|.|++.|...|..++..+........ .++.++|+..... .++ ..+.++++
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVGV-----------EEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEV 91 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTTC-----------CEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhcC-----------CEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888887766543111 3466666543221 111 12222322
Q ss_pred ---hhhcCceEEE---E-cccHHHHHHHHHHhCCCcEEEEeeeCCCc
Q 030189 99 ---ASKYVLQLDI---I-RSDFKSGLEALLNAKPIRAIFLGVRIGDP 138 (181)
Q Consensus 99 ---~~~~~l~~~~---~-~~~~k~~l~~~~~~~~~~~~i~G~R~~es 138 (181)
.+..|+++.. . ..+..+.+ +.++.+.+.+|+|.+....
T Consensus 92 ~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~ 136 (294)
T 3loq_A 92 AQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASK 136 (294)
T ss_dssp HHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCH
T ss_pred HHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCcc
Confidence 3346888766 2 34566667 6677789999999986553
No 67
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=61.30 E-value=39 Score=23.62 Aligned_cols=94 Identities=13% Similarity=0.030 Sum_probs=55.9
Q ss_pred CceEEEecCch---------hHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC--Cc---------hH-----
Q 030189 36 EEVAFSFNGGK---------DSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--AF---------PE----- 90 (181)
Q Consensus 36 ~~i~va~SGGK---------DS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--~f---------pe----- 90 (181)
.+|+|++.|.. .|.-++..+......... ...++.++|+.... .+ ++
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~--------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNT--------SDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDM 77 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCT--------TSEEEEEEEEEC----------CCCCSHHHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccC--------CCCEEEEEEEeecccccccccccccCCHHHHHHH
Confidence 68999999998 888777777663211000 01357777764211 11 21
Q ss_pred -------HHHHHHHHh---hhcCceEE--EEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 91 -------INSFTYDTA---SKYVLQLD--IIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 91 -------~~~f~~~~~---~~~~l~~~--~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
..+.++++. +..|+++. +...+..+.+-++.++.+.+++|+|.|...
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~ 136 (175)
T 2gm3_A 78 RQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLG 136 (175)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 112333332 33566653 344566778888888888999999998654
No 68
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=56.49 E-value=48 Score=24.96 Aligned_cols=107 Identities=11% Similarity=0.025 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecC--CCC--chHH--HH
Q 030189 20 NNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFES--NSA--FPEI--NS 93 (181)
Q Consensus 20 ~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idt--g~~--fpe~--~~ 93 (181)
+.+-+.|.+.+..- +...|++|||.-=..++..+...... .. ..-.++.++++|. |.. .++. ..
T Consensus 14 ~~aA~~l~~~i~~~--~~~~i~lsgG~T~~~~~~~L~~~~~~-~~-------~~~~~v~v~~lder~gv~~~~~~sn~~~ 83 (242)
T 2bkx_A 14 QIAARITADTIKEK--PDAVLGLATGGTPEGTYRQLIRLHQT-EN-------LSFQNITTVNLDEYAGLSSDDPNSYHFY 83 (242)
T ss_dssp HHHHHHHHHHHHHC--TTCEEEECCSSTTHHHHHHHHHHHHH-SC-------CCCTTCEEEESEEETTCCTTSTTSHHHH
T ss_pred HHHHHHHHHHHHHC--CCeEEEECCCCCHHHHHHHHHHHhhc-cC-------CChhheEEEeCccccCCCCCchHHHHHH
Confidence 34444555555552 45789999997666666665543110 00 0013688898887 754 2332 33
Q ss_pred HHHHHhhhcCceEEEE-cc-----cHH---HHHHHHHHhC-CCcEEEEeeeCC
Q 030189 94 FTYDTASKYVLQLDII-RS-----DFK---SGLEALLNAK-PIRAIFLGVRIG 136 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~-~~-----~~k---~~l~~~~~~~-~~~~~i~G~R~~ 136 (181)
..+.+.++++++...+ .| +.. ...++.++.. +.++.++|+=.+
T Consensus 84 ~~~~l~~~~~~~~~~i~~p~~~~~~~~~~~~~y~~~i~~~~~~Dl~llGiG~d 136 (242)
T 2bkx_A 84 MNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDSLGDTDIQLLGIGRN 136 (242)
T ss_dssp HHHHTGGGSCCCGGGEECCCTTCSCHHHHHHHHHHHHHHTTSCSEEEECCCTT
T ss_pred HHHHHhccCCCCHHHEEcCCCCCCCHHHHHHHHHHHHHhcCCCCEEEECcCCC
Confidence 3666677776542211 11 112 2344445553 589999999744
No 69
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=54.30 E-value=6.7 Score=25.64 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=16.4
Q ss_pred ecccCCchHHHHHHHhcc
Q 030189 160 NPILDWSYRLLINNKLFG 177 (181)
Q Consensus 160 ~Pi~~Wt~~dVw~yi~~~ 177 (181)
.|+..||.+||-.|+...
T Consensus 12 ~~v~~Ws~edV~~wL~~l 29 (89)
T 1kw4_A 12 PPISSWSVDDVSNFIREL 29 (89)
T ss_dssp CCGGGCCHHHHHHHHHTS
T ss_pred CCchhCCHHHHHHHHHHC
Confidence 589999999999999876
No 70
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=53.15 E-value=69 Score=23.96 Aligned_cols=88 Identities=8% Similarity=0.034 Sum_probs=51.7
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---------------Cc------------h
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS---------------AF------------P 89 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~---------------~f------------p 89 (181)
+|.|++.|...|..++..+........ .++.++|+.... ++ .
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLS-----------APLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALAL 70 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHT-----------CCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhC-----------CcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHH
Confidence 689999999999888877666543211 357777764211 01 0
Q ss_pred HHHHHHHHH---hhhcCceEE--EEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 90 EINSFTYDT---ASKYVLQLD--IIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 90 e~~~f~~~~---~~~~~l~~~--~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
+..+.++++ .+..|+++. +...+..+.+-++ +.+.+.+|+|.|...
T Consensus 71 ~~~~~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~ 121 (268)
T 3ab8_A 71 RGEAVLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEA 121 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCC
Confidence 011223332 233466543 3344555666666 567999999988644
No 71
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=52.47 E-value=71 Score=23.90 Aligned_cols=102 Identities=10% Similarity=0.152 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEec--CCCC--chHH--HH
Q 030189 20 NNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFE--SNSA--FPEI--NS 93 (181)
Q Consensus 20 ~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~id--tg~~--fpe~--~~ 93 (181)
+.+-+.|.+.++. + +. .|++|||.-=..+...+.... .. -.++.+|++| -|.. .++. ..
T Consensus 15 ~~aA~~l~~~i~~-~-~~-~i~ls~G~T~~~~~~~L~~~~--~~----------~~~v~v~~ldEr~gv~~~~~~sn~~~ 79 (234)
T 2ri0_A 15 KVAFRMLEEEITF-G-AK-TLGLATGSTPLELYKEIRESH--LD----------FSDMVSINLDEYVGLSADDKQSYAYF 79 (234)
T ss_dssp HHHHHHHHHHHHT-T-CC-EEEECCSSTTHHHHHHHHTSC--CC----------CTTCEEEESEEETTCCTTSTTSHHHH
T ss_pred HHHHHHHHHHHHh-C-CC-EEEEcCCCCHHHHHHHHHhcC--CC----------hhheEEEeCeeecCCCCCChHHHHHH
Confidence 3444566666665 2 24 899999976555555544210 00 1368889988 3443 3332 33
Q ss_pred HHHHHhhhcCceEEEEccc----HH---HHHHHHHHhCCCcEEEEeeeCC
Q 030189 94 FTYDTASKYVLQLDIIRSD----FK---SGLEALLNAKPIRAIFLGVRIG 136 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~~~----~k---~~l~~~~~~~~~~~~i~G~R~~ 136 (181)
..+.+.++++.+-..+..+ .. ...++.+++.+.++.++|+=.+
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~Dl~llGiG~d 129 (234)
T 2ri0_A 80 MKQNLFAAKPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIGRN 129 (234)
T ss_dssp HHHHTTTTSCCSEEECCCTTCSCHHHHHHHHHHHHHHSCCSEEEECCCTT
T ss_pred HHHHHhccCCCcHhhcCCCCCCCHHHHHHHHHHHHHhCCCCEEEEccCCC
Confidence 3667777777766543221 11 2234445445689999999744
No 72
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=47.81 E-value=92 Score=23.84 Aligned_cols=108 Identities=11% Similarity=0.080 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhc---CCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecC--CCC--chHH--
Q 030189 21 NAINVIQRTLALY---SIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFES--NSA--FPEI-- 91 (181)
Q Consensus 21 ~a~~~i~~~~~~~---~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idt--g~~--fpe~-- 91 (181)
.+-+.|.+.+... ..+...|++|||.-=..++..+..... .. ...-.++.++++|. |.. .|+.
T Consensus 15 ~aA~~l~~~l~~~~~~~~~~~~i~lsgGsTp~~~~~~L~~~~~---~~-----~~~~~~v~v~~ldEr~gv~~~~~~sn~ 86 (266)
T 1fs5_A 15 WAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHK---AG-----QVSFKHVVTFNMDEYVGLPKEHPESYY 86 (266)
T ss_dssp HHHHHHHHHHHHHCCCSSSCEEEEECCSSTTHHHHHHHHHHHH---TT-----SCCCTTEEEEESEEESSCCTTSTTSHH
T ss_pred HHHHHHHHHHHHhhhcccCceEEEEcCCCCHHHHHHHHHHHhh---cC-----CCChHHeEEEeCeeccCCCCCCHHHHH
Confidence 3444455544431 114678999999766666665554311 00 00013588888885 543 3332
Q ss_pred HHHHHHHhhhcCceE---EEEc---ccHH---HHHHHHHHh-CCCcEEEEeeeCC
Q 030189 92 NSFTYDTASKYVLQL---DIIR---SDFK---SGLEALLNA-KPIRAIFLGVRIG 136 (181)
Q Consensus 92 ~~f~~~~~~~~~l~~---~~~~---~~~k---~~l~~~~~~-~~~~~~i~G~R~~ 136 (181)
....+.+.++++++. +... .+.. ...++.++. .+.++.++|+=.+
T Consensus 87 ~~~~~~l~~~~~~~~~~i~~p~~~~~~~e~~~~~y~~~l~~~~~~Dl~llGiG~d 141 (266)
T 1fs5_A 87 SFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGND 141 (266)
T ss_dssp HHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHHCCCSEEEECCCTT
T ss_pred HHHHHHhhccCCCCHHHEEeCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEccCCC
Confidence 233566677776543 2211 1222 233444544 3589999999744
No 73
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=44.16 E-value=8.5 Score=25.99 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=17.3
Q ss_pred eEEecccCCchHHHHHHHhcc
Q 030189 157 MRVNPILDWSYRLLINNKLFG 177 (181)
Q Consensus 157 ~~i~Pi~~Wt~~dVw~yi~~~ 177 (181)
..-.|+..||.+||-.||...
T Consensus 18 ~~~~~v~~Wt~~~V~~WL~~~ 38 (106)
T 3bs5_A 18 TRPKAVYLWTVSDVLKWYRRH 38 (106)
T ss_dssp --CCCGGGCCHHHHHHHHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHH
Confidence 456799999999999999876
No 74
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=43.43 E-value=1.3e+02 Score=24.48 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCch--------hHH-HHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGK--------DST-VLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN 85 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGK--------DS~-vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg 85 (181)
++...+-.+++++.+-+..+.+++.|=+|+.. |+. -...+++.+-. ..+..+.+..|
T Consensus 199 lenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~--------------~Gvd~i~v~~~ 264 (362)
T 4ab4_A 199 LENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGK--------------RGIAFICSRER 264 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHH--------------TTCSEEEEECC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHH--------------hCCCEEEECCC
Confidence 66666666666666655555457888888652 222 23445544421 13566676655
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCCCcEEEEeee
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
..-+ .+++++.+.++++++....--.+..++++++...+++.+|.-
T Consensus 265 ~~~~---~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~ 310 (362)
T 4ab4_A 265 EADD---SIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVP 310 (362)
T ss_dssp CCTT---CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHH
T ss_pred CCCH---HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEECHH
Confidence 3212 356667777788876654321344567777655888888863
No 75
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=43.26 E-value=1.2e+02 Score=24.09 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=46.1
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc----
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS---- 111 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~---- 111 (181)
.+++|-.||+ ++-+-.|+.+... |..+.++.+|..|... . .++++++|+++..+..
T Consensus 106 ~ri~vl~Sg~--g~nl~~ll~~~~~----------g~l~~~I~~Visn~~~----~----~~~A~~~gIp~~~~~~~~~~ 165 (302)
T 3o1l_A 106 KRVVLMASRE--SHCLADLLHRWHS----------DELDCDIACVISNHQD----L----RSMVEWHDIPYYHVPVDPKD 165 (302)
T ss_dssp CEEEEEECSC--CHHHHHHHHHHHT----------TCSCSEEEEEEESSST----T----HHHHHTTTCCEEECCCCSSC
T ss_pred cEEEEEEeCC--chhHHHHHHHHHC----------CCCCcEEEEEEECcHH----H----HHHHHHcCCCEEEcCCCcCC
Confidence 4677777877 3455556655421 1112356666666533 2 3457889999888732
Q ss_pred --cHHHHHHHHHHhCCCcEEEEe
Q 030189 112 --DFKSGLEALLNAKPIRAIFLG 132 (181)
Q Consensus 112 --~~k~~l~~~~~~~~~~~~i~G 132 (181)
.+.+.+.+.+++.+.+++++.
T Consensus 166 r~~~~~~~~~~l~~~~~DliVla 188 (302)
T 3o1l_A 166 KEPAFAEVSRLVGHHQADVVVLA 188 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHHhCCCEEEHh
Confidence 234457777777777766653
No 76
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=41.67 E-value=8.9 Score=24.99 Aligned_cols=23 Identities=4% Similarity=-0.083 Sum_probs=19.0
Q ss_pred eeEEecccCCchHHHHHHHhccc
Q 030189 156 FMRVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 156 ~~~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
.+.-.|+..|+.+||-.|+....
T Consensus 11 ~~~~~~v~~Wt~~dV~~WL~~~g 33 (91)
T 1v85_A 11 LLVHKAVDKWTTEEVVLWLEQLG 33 (91)
T ss_dssp HHHHSCGGGCCHHHHHHHHHHHC
T ss_pred cCCCCCcccCCHHHHHHHHHHcC
Confidence 45568999999999999997643
No 77
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=40.81 E-value=86 Score=23.08 Aligned_cols=54 Identities=6% Similarity=-0.032 Sum_probs=40.3
Q ss_pred ceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHHHHHHHHHH-hCCCcEEEEee
Q 030189 77 IRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLN-AKPIRAIFLGV 133 (181)
Q Consensus 77 ~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~-~~~~~~~i~G~ 133 (181)
.+.+++- .|+++.+.++++.+.++.++.+...++.+++..+.+ ..+.+++|..-
T Consensus 5 ~~I~~ia---py~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRG 59 (196)
T 2q5c_A 5 LKIALIS---QNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRG 59 (196)
T ss_dssp CEEEEEE---SCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEH
T ss_pred CcEEEEE---ccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECC
Confidence 4666663 478888999999999998888888888887765544 45677777643
No 78
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=40.40 E-value=1.8e+02 Score=25.02 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSF 94 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f 94 (181)
+++......+.+...-..++..+++|. | |+.-+..|++-+.. .-+.++.+-++..-++..+-
T Consensus 344 i~~er~r~~~~l~d~~~~l~GKrvaI~--g--d~~~~~~la~fL~e--------------lGm~vv~v~~~~~~~~~~~~ 405 (523)
T 3u7q_B 344 LTKERGRLVDMMTDSHTWLHGKRFALW--G--DPDFVMGLVKFLLE--------------LGCEPVHILCHNGNKRWKKA 405 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEE--C--SHHHHHHHHHHHHH--------------TTCEEEEEEETTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEE--C--CchHHHHHHHHHHH--------------cCCEEEEEEeCCCCHHHHHH
Confidence 444344445555554344444566655 5 45555565554421 12455555454444555555
Q ss_pred HHHHhhh--cCceEEE-EcccHHHHHHHHHHhCCCcEEEEeee
Q 030189 95 TYDTASK--YVLQLDI-IRSDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 95 ~~~~~~~--~~l~~~~-~~~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
+++..+. ++....+ ..++..+ +.+.+++.+.++++.|.+
T Consensus 406 ~~~~l~~~~~~~~~~v~~~~D~~~-l~~~i~~~~pDLlig~s~ 447 (523)
T 3u7q_B 406 VDAILAASPYGKNATVYIGKDLWH-LRSLVFTDKPDFMIGNSY 447 (523)
T ss_dssp HHHHHHTSGGGTTCEEEESCCHHH-HHHHHHHTCCSEEEECTT
T ss_pred HHHHHhhccCCCCcEEEECCCHHH-HHHHHHhcCCCEEEECcc
Confidence 5555543 4443333 3455444 555666667888888764
No 79
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.07 E-value=11 Score=25.11 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=18.0
Q ss_pred EEecccCCchHHHHHHHhccc
Q 030189 158 RVNPILDWSYRLLINNKLFGF 178 (181)
Q Consensus 158 ~i~Pi~~Wt~~dVw~yi~~~~ 178 (181)
.-.|+..|+.+||-.||....
T Consensus 23 ~~~~v~~Ws~~~V~~WL~~lg 43 (103)
T 2e8o_A 23 LHPDYKTWGPEQVCSFLRRGG 43 (103)
T ss_dssp CCSCGGGCHHHHHHHHHHHHT
T ss_pred cccChhhCCHHHHHHHHHHcC
Confidence 468999999999999998654
No 80
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=39.47 E-value=1.5e+02 Score=24.08 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCch--------hHH-HHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGK--------DST-VLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN 85 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGK--------DS~-vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg 85 (181)
++...+-.+++++.+-+..+.+++.|=+|+.. |+. ....++..+.. ..+..+.+..|
T Consensus 207 lenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~--------------~Gvd~i~v~~~ 272 (361)
T 3gka_A 207 IENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGR--------------RRIAFLFARES 272 (361)
T ss_dssp HHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHH--------------TTCSEEEEECC
T ss_pred hhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHH--------------cCCCEEEECCC
Confidence 55555555666665555555457888777631 222 23444444421 12566676655
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCCCcEEEEeee
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
..-+ .+++++.+.++++++....--.+..++++++...+++.+|.-
T Consensus 273 ~~~~---~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~ 318 (361)
T 3gka_A 273 FGGD---AIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKL 318 (361)
T ss_dssp CSTT---CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHH
T ss_pred CCCH---HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCccEEEECHH
Confidence 4212 456677777788876654321344567777655888888864
No 81
>1uv7_A General secretion pathway protein M; transport; HET: MSE; 1.7A {Vibrio cholerae} SCOP: d.67.4.1
Probab=38.28 E-value=37 Score=22.93 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=25.5
Q ss_pred EEecCCCCchHHHHHHHHHhhhcCceEEEEc
Q 030189 80 IYFESNSAFPEINSFTYDTASKYVLQLDIIR 110 (181)
Q Consensus 80 v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~ 110 (181)
|.++. ..|+.+..|++++.+.+|+.+..+.
T Consensus 52 V~l~~-v~F~~L~~WL~~L~~~~Gv~v~~l~ 81 (110)
T 1uv7_A 52 VWIQP-LPFSQLVSWIAYLQERQGVSVDAID 81 (110)
T ss_dssp EEECC-BCHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred EEECC-CCHHHHHHHHHHHHHhcCceEEEEE
Confidence 56665 7899999999999999999987655
No 82
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=36.62 E-value=1.5e+02 Score=23.26 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=44.2
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc---
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD--- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--- 112 (181)
.+++|-.||+ ++-+-.|+.+... |..+.++.+|..|... . ..+++++|+++..+...
T Consensus 91 ~ri~vl~Sg~--g~~l~~ll~~~~~----------g~l~~~i~~Visn~~~----~----~~~A~~~gIp~~~~~~~~~~ 150 (286)
T 3n0v_A 91 PKVVIMVSKA--DHCLNDLLYRQRI----------GQLGMDVVAVVSNHPD----L----EPLAHWHKIPYYHFALDPKD 150 (286)
T ss_dssp CEEEEEESSC--CHHHHHHHHHHHT----------TSSCCEEEEEEESSST----T----HHHHHHTTCCEEECCCBTTB
T ss_pred cEEEEEEeCC--CCCHHHHHHHHHC----------CCCCcEEEEEEeCcHH----H----HHHHHHcCCCEEEeCCCcCC
Confidence 3678878877 4555566655421 1112346666666543 2 23578899998876432
Q ss_pred ---HHHHHHHHHHhCCCcEEEE
Q 030189 113 ---FKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 113 ---~k~~l~~~~~~~~~~~~i~ 131 (181)
+.+.+.+.+++.+.+++++
T Consensus 151 r~~~~~~~~~~l~~~~~Dlivl 172 (286)
T 3n0v_A 151 KPGQERKVLQVIEETGAELVIL 172 (286)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEe
Confidence 2335666676666666555
No 83
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=35.46 E-value=1.5e+02 Score=22.69 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=52.8
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC-------Cch-HH--------HHHHHHHh
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS-------AFP-EI--------NSFTYDTA 99 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~-------~fp-e~--------~~f~~~~~ 99 (181)
.+|.|+..|...|..++..+........ .++.++|+.... .++ +. .+.+++..
T Consensus 20 ~~ILv~~D~s~~s~~al~~A~~lA~~~~-----------a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (309)
T 3cis_A 20 LGIIVGIDDSPAAQVAVRWAARDAELRK-----------IPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDAL 88 (309)
T ss_dssp TEEEEECCSSHHHHHHHHHHHHHHHHHT-----------CCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHhcC-----------CcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHH
Confidence 6899999999999888776665543211 357888875421 111 11 12222222
Q ss_pred ---hhc-----CceEE--EEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 100 ---SKY-----VLQLD--IIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 100 ---~~~-----~l~~~--~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
+.. |+++. +...+..+.+.++.+ +.+++|+|.|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~ 134 (309)
T 3cis_A 89 KVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSG 134 (309)
T ss_dssp HHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTT
T ss_pred HHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCc
Confidence 222 66553 344555666666654 6899999998654
No 84
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=33.69 E-value=2.2e+02 Score=24.08 Aligned_cols=97 Identities=8% Similarity=0.054 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCchhH-HHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDS-TVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS-~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
|++......+.+.+....+...+++| | ||-|- ..+..++... -+.++.+-|....++.++
T Consensus 312 i~~er~~~~~al~~~~~~l~GKrv~i-~-~~~~~~~~l~~~L~El-----------------Gmevv~~gt~~~~~~d~~ 372 (483)
T 3pdi_A 312 IAREEAKVRAALEPWRARLEGKRVLL-Y-TGGVKSWSVVSALQDL-----------------GMKVVATGTKKSTEEDKA 372 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEE-E-CSSSCHHHHHHHHHHH-----------------TCEEEEECBSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEE-E-CCCchHHHHHHHHHHC-----------------CCEEEEEecCCCCHHHHH
Confidence 33334445555666555555456665 3 44342 2233333332 256666655544455444
Q ss_pred HHHHHhhhcCceEEEEc-ccHHHHHHHHHHhCCCcEEEEeee
Q 030189 94 FTYDTASKYVLQLDIIR-SDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 94 f~~~~~~~~~l~~~~~~-~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
.+.+ .++....++. ++..+ +.+++++.+.+++|.|.+
T Consensus 373 ~~~~---~l~~~~~i~~d~d~~e-l~~~i~~~~pDL~ig~~~ 410 (483)
T 3pdi_A 373 RIRE---LMGDDVKMLDEGNARV-LLKTVDEYQADILIAGGR 410 (483)
T ss_dssp HHHH---HSCSSCCBCCSCSHHH-HHHHHHHTTCSEEECCGG
T ss_pred HHHH---hcCCCCEEEeCCCHHH-HHHHHHhcCCCEEEECCc
Confidence 4433 3444433333 34433 556666677888888765
No 85
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=33.61 E-value=1.7e+02 Score=22.74 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=60.6
Q ss_pred CchHHHHHHHH-HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---
Q 030189 11 DDRRLKTKYNN-AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--- 86 (181)
Q Consensus 11 ~~~~l~~~~~~-a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--- 86 (181)
+...+.+...+ ..+.++.++..- ++..+++|||.-=..++..+.+....... .++.++++|.-.
T Consensus 31 ~~~~l~~~~A~~i~~~i~~ai~~~--~~~~l~LsgGstP~~~y~~L~~~~~~idw----------~~v~~f~~DEr~vp~ 98 (268)
T 3ico_A 31 DSDILVAAAGKRLVGAIGAAVAAR--GQALIVLTGGGNGIALLRYLSAQAQQIEW----------SKVHLFWGDERYVPE 98 (268)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH--SCEEEEECCSHHHHHHHHHHHHHGGGSCG----------GGEEEEESEEECSCT
T ss_pred CcchhhhhhcchhhhHhHHHHHhc--CceEEEEecCCchhHHHHHHHHHhhhhhh----------eeeEEeecccccCCC
Confidence 34455555443 334566666654 57899999996555666666552110011 357778887432
Q ss_pred CchH-HHHHH-HHHhhhcCce---EEEEcc-------cHHHHHH---HHHHhC--------CCcEEEEeeeCCC
Q 030189 87 AFPE-INSFT-YDTASKYVLQ---LDIIRS-------DFKSGLE---ALLNAK--------PIRAIFLGVRIGD 137 (181)
Q Consensus 87 ~fpe-~~~f~-~~~~~~~~l~---~~~~~~-------~~k~~l~---~~~~~~--------~~~~~i~G~R~~e 137 (181)
+-|+ .+.++ +.+-+..+++ ++.... +..+... +.+++. +.+++++|+=.|-
T Consensus 99 ~~~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~~p~~Dl~lLGmG~DG 172 (268)
T 3ico_A 99 DDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEG 172 (268)
T ss_dssp TCTTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHSSTTCSSCCCSEEEECCCTTC
T ss_pred CcchhHHHHHHHHHHhccCCcccccccccccCCCcccchhHHHHHHHHHHhhccCCCCCCCCcceEEeccCCcc
Confidence 2232 33443 3344444443 333321 2333333 334432 5899999996654
No 86
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=32.91 E-value=92 Score=19.55 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCchhHHH--HHHHHHHHh
Q 030189 20 NNAINVIQRTLALYSIEEVAFSFNGGKDSTV--LLHLLRAGY 59 (181)
Q Consensus 20 ~~a~~~i~~~~~~~~~~~i~va~SGGKDS~v--ll~L~~~~~ 59 (181)
+.+++.+++++.+-|...+-++.|.-.|..+ +|.|+.+..
T Consensus 32 eralqelekalaragarnvqitisaendeqakelleliarll 73 (96)
T 2jvf_A 32 ERALQELEKALARAGARNVQITISAENDEQAKELLELIARLL 73 (96)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHH
Confidence 3566677888888777788888888877765 555555554
No 87
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=32.22 E-value=49 Score=25.00 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=15.9
Q ss_pred HhcCCCceEEEecCchhHHHHHH
Q 030189 31 ALYSIEEVAFSFNGGKDSTVLLH 53 (181)
Q Consensus 31 ~~~~~~~i~va~SGGKDS~vll~ 53 (181)
+..+...++||.|.|.--..++.
T Consensus 40 ~e~~Ik~iVVAS~sG~TA~k~~e 62 (201)
T 1vp8_A 40 KELGIKHLVVASSYGDTAMKALE 62 (201)
T ss_dssp HHHTCCEEEEECSSSHHHHHHHH
T ss_pred HHcCCCEEEEEeCCChHHHHHHH
Confidence 33466899999999965544444
No 88
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=31.98 E-value=2.1e+02 Score=23.33 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCc--------hhHH-HHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC
Q 030189 15 LKTKYNNAINVIQRTLALYSIEEVAFSFNGG--------KDST-VLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN 85 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~~i~va~SGG--------KDS~-vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg 85 (181)
++...+-+.++++.+-+..+.+++.|=+|.+ .++. ....+++.+.. ..+..+.+..+
T Consensus 213 lenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~--------------~Gvd~i~v~~~ 278 (376)
T 1icp_A 213 LENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNK--------------YDLAYCHVVEP 278 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGG--------------GCCSEEEEECC
T ss_pred HHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHH--------------cCCCEEEEcCC
Confidence 6666666666666666665644788777742 2222 34455555421 12455565544
Q ss_pred C---Cch--HHHHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCCCcEEEEee
Q 030189 86 S---AFP--EINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 86 ~---~fp--e~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
. ..| ....++.++.+.+++++.....=-.+...+++++...+++.+|.
T Consensus 279 ~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i~~~~a~~~l~~g~aD~V~~gR 331 (376)
T 1icp_A 279 RMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGR 331 (376)
T ss_dssp SCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEESH
T ss_pred cccCCCCccccHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHCCCCcEEeecH
Confidence 1 112 11234566777788887654331134566777765688888886
No 89
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=31.80 E-value=1.7e+02 Score=22.30 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=60.2
Q ss_pred CchHHHHHHHH-HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---
Q 030189 11 DDRRLKTKYNN-AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--- 86 (181)
Q Consensus 11 ~~~~l~~~~~~-a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--- 86 (181)
+...+.+...+ ..+.++.++..- ++..+++|||.-=.-++..+.+....... .++.++++|.-.
T Consensus 15 ~~~~l~~~~A~~i~~~i~~~~~~~--~~~~l~LsgGstP~~~y~~L~~~~~~idw----------~~v~~f~~DEr~vp~ 82 (248)
T 3oc6_A 15 DTAALVAAAGDRLVDAISSAIGER--GQATIVLTGGGTGIGLLKRVRERSGEIDW----------SKVHIYWGDERFVPQ 82 (248)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH--SCEEEEECCSHHHHHHHHHHHHTGGGSCG----------GGEEEEESEEECSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECCCccHHHHHHHHHhhccCCCc----------ceEEEEEeeeccCCC
Confidence 34445555443 345566666664 57899999996555666665542110011 357788887422
Q ss_pred CchH-HHHHHH-HHhhhcCce---EEEEcc-------cHHHHH---HHHHHh------CCCcEEEEeeeCCC
Q 030189 87 AFPE-INSFTY-DTASKYVLQ---LDIIRS-------DFKSGL---EALLNA------KPIRAIFLGVRIGD 137 (181)
Q Consensus 87 ~fpe-~~~f~~-~~~~~~~l~---~~~~~~-------~~k~~l---~~~~~~------~~~~~~i~G~R~~e 137 (181)
+.|+ .+.+++ .+-+..+++ ++.+.. +..+.. ++.+++ .+.+++++|+=.|-
T Consensus 83 ~~~~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~~~Dl~lLG~G~dG 154 (248)
T 3oc6_A 83 DDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYAQLLSANFDSSVPGFDVHLLGMGGEG 154 (248)
T ss_dssp TCTTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHHTSSSCSEEEEEECCCTTC
T ss_pred CChHHHHHHHHHHhhccCCCChhhEEecCCcccccCCCHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCC
Confidence 2232 233333 344444443 333221 333333 233443 35899999996653
No 90
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=31.23 E-value=1.7e+02 Score=22.01 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=44.1
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc-H-
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD-F- 113 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~-~- 113 (181)
.+++|-.||+ ++-+-.|+..... +..+.++.+|..|... ..+.+.++++|+++.++.+. +
T Consensus 3 ~riavl~Sg~--Gsnl~ali~~~~~----------~~l~~eI~~Visn~~~------a~v~~~A~~~gIp~~~~~~~~~~ 64 (211)
T 3p9x_A 3 KRVAIFASGS--GTNAEAIIQSQKA----------GQLPCEVALLITDKPG------AKVVERVKVHEIPVCALDPKTYP 64 (211)
T ss_dssp CEEEEECCTT--CHHHHHHHHHHHT----------TCCSSEEEEEEESCSS------SHHHHHHHTTTCCEEECCGGGSS
T ss_pred CEEEEEEeCC--chHHHHHHHHHHc----------CCCCcEEEEEEECCCC------cHHHHHHHHcCCCEEEeChhhcC
Confidence 3677777775 2334444443311 1111345566665433 24667788899998877652 2
Q ss_pred -----HHHHHHHHHhCCCcEEEE
Q 030189 114 -----KSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 114 -----k~~l~~~~~~~~~~~~i~ 131 (181)
.+.+.+.+++.+.+++++
T Consensus 65 ~r~~~d~~~~~~l~~~~~Dliv~ 87 (211)
T 3p9x_A 65 SKEAYEIEVVQQLKEKQIDFVVL 87 (211)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEE
T ss_pred chhhhHHHHHHHHHhcCCCEEEE
Confidence 345666677666665554
No 91
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.03 E-value=1.2e+02 Score=20.18 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhhcCceEEEEccc---HHHHHHHHHHhCCCcEEE
Q 030189 89 PEINSFTYDTASKYVLQLDIIRSD---FKSGLEALLNAKPIRAIF 130 (181)
Q Consensus 89 pe~~~f~~~~~~~~~l~~~~~~~~---~k~~l~~~~~~~~~~~~i 130 (181)
.|+..-++++.++|+-.++++-.+ +.+.--++.+..|..+++
T Consensus 36 qelkdsieelvkkynativvvvvddkewaekairfvkslgaqvli 80 (134)
T 2l69_A 36 QELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLI 80 (134)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEE
Confidence 455666777777777776555443 333334455555544333
No 92
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=31.00 E-value=2.1e+02 Score=22.98 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=38.4
Q ss_pred cCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCce---EEEEcc-cHHH---
Q 030189 43 NGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQ---LDIIRS-DFKS--- 115 (181)
Q Consensus 43 SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~---~~~~~~-~~k~--- 115 (181)
+.|| |+.+++++..+.. ..-+++|+++...+...+ ++++|++ +.+..+ +..+
T Consensus 71 GsGK-TtLal~la~~~~~--------------~g~~vlyi~~E~~~~~~~------a~~lG~~~~~l~i~~~~~~e~~l~ 129 (349)
T 2zr9_A 71 SSGK-TTVALHAVANAQA--------------AGGIAAFIDAEHALDPEY------AKKLGVDTDSLLVSQPDTGEQALE 129 (349)
T ss_dssp TSSH-HHHHHHHHHHHHH--------------TTCCEEEEESSCCCCHHH------HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHh--------------CCCeEEEEECCCCcCHHH------HHHcCCCHHHeEEecCCCHHHHHH
Confidence 4577 8888888877642 125789999887775542 3445543 333443 2332
Q ss_pred HHHHHHHhCCCcEEEE
Q 030189 116 GLEALLNAKPIRAIFL 131 (181)
Q Consensus 116 ~l~~~~~~~~~~~~i~ 131 (181)
-++.++++.+.+++|+
T Consensus 130 ~~~~l~~~~~~~lIVI 145 (349)
T 2zr9_A 130 IADMLVRSGALDIIVI 145 (349)
T ss_dssp HHHHHHTTTCCSEEEE
T ss_pred HHHHHHhcCCCCEEEE
Confidence 2334444445555544
No 93
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=30.55 E-value=1.8e+02 Score=22.20 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=60.7
Q ss_pred CchHHHHHHHH-HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---
Q 030189 11 DDRRLKTKYNN-AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--- 86 (181)
Q Consensus 11 ~~~~l~~~~~~-a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--- 86 (181)
+...+.+...+ ..+.++.++..- ++..+++|||.-=..++..+.+....... .++.++++|.-.
T Consensus 15 ~~~~l~~~~A~~i~~~i~~a~~~~--~~~~l~LsgGstP~~~y~~L~~~~~~idw----------~~v~~f~~DEr~vp~ 82 (251)
T 3tx2_A 15 DTDALVTAAGDRLASAITGALAER--GKAMIVLTGGGTGIALLKHLRDVASGLDW----------TNVHVFWGDDRYVPK 82 (251)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH--SCEEEEECCSHHHHHHHHHHHHHHTTSCG----------GGEEEEESEEESSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECCCchHHHHHHHHHhhccCCCC----------ceeEEEeeeeccCCC
Confidence 34445555443 345566666654 57899999996555666665542110010 357778887432
Q ss_pred CchH-HHHHHH-HHhhhcCce---EEEEcc-------cHHHHH---HHHHHh-------C-CCcEEEEeeeCCC
Q 030189 87 AFPE-INSFTY-DTASKYVLQ---LDIIRS-------DFKSGL---EALLNA-------K-PIRAIFLGVRIGD 137 (181)
Q Consensus 87 ~fpe-~~~f~~-~~~~~~~l~---~~~~~~-------~~k~~l---~~~~~~-------~-~~~~~i~G~R~~e 137 (181)
..|+ .+.+++ .+-+..+++ ++.+.. +..+.. ++.+++ . +.+++++|+=.|-
T Consensus 83 ~~~~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~~~~~Dl~lLG~G~DG 156 (251)
T 3tx2_A 83 TDPERNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAALAYEQLLAANAEPGQDCPAFDVHLLGMGGEG 156 (251)
T ss_dssp TCTTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSSCTTCHHHHHHHHHHHHHHTSCTTCSSCCCSEEEECCCTTC
T ss_pred CChHHHHHHHHHHhhccCCCCHHHEEECCCcccccCCCHHHHHHHHHHHHHhhhccccCCCCCCEEEECCCCCC
Confidence 2232 333433 344444443 333221 333333 333544 3 5899999996653
No 94
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=28.90 E-value=2.3e+02 Score=22.96 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHhhhcCceEEEEcc
Q 030189 87 AFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 87 ~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
.|+.+...+....+.+|+++..+..
T Consensus 129 ~y~~~~~~~~~~~~~~g~~~~~v~~ 153 (414)
T 3ndn_A 129 LFGSCFVVCSEILPRWGVQTVFVDG 153 (414)
T ss_dssp CCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred ccchHHHHHHHHHHHcCcEEEEeCC
Confidence 4666666666666667777666653
No 95
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=28.87 E-value=1.1e+02 Score=23.17 Aligned_cols=113 Identities=8% Similarity=0.078 Sum_probs=59.7
Q ss_pred CchHHHHHHHH-HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCC---C
Q 030189 11 DDRRLKTKYNN-AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESN---S 86 (181)
Q Consensus 11 ~~~~l~~~~~~-a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg---~ 86 (181)
+...+.....+ ..+.+++++..- ++..+++|||.-=..+...+.+.. .. =.++.++++|.- .
T Consensus 10 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsgGstp~~~y~~L~~~~--i~----------w~~v~~f~~DEr~vp~ 75 (232)
T 3lhi_A 10 NAAEAAQSLADAVADALQGALDEK--GGAVLAVSGGRSPIAFFNALSQKD--LD----------WKNVGITLADERIVPT 75 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH--SCEEEEECCSSTTHHHHHHHHTSC--CC----------GGGEEEEESEEESSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEEeCCCCHHHHHHHHHhcC--CC----------chheEEEEeeeccCCC
Confidence 44555555553 335667777664 578999999976666666554321 00 135777888752 2
Q ss_pred CchH-HHHHHHH-HhhhcCceEEEEc-----ccHH--H---HHHHHHHhC-CCcEEEEeeeCCC
Q 030189 87 AFPE-INSFTYD-TASKYVLQLDIIR-----SDFK--S---GLEALLNAK-PIRAIFLGVRIGD 137 (181)
Q Consensus 87 ~fpe-~~~f~~~-~~~~~~l~~~~~~-----~~~k--~---~l~~~~~~~-~~~~~i~G~R~~e 137 (181)
..|+ .+.++++ +-+....+-..+. .+.. + ..++.+++. +.+++++|+=.|-
T Consensus 76 ~~~~Sn~~~~~~~ll~~~~~~~~~~p~~~~~~~~~~~~~~~~ye~~i~~~~~~Dl~lLG~G~dG 139 (232)
T 3lhi_A 76 NHADSNTGLVREYLLKNKAAAAVWIPMVEDGKTETELHPDAVVDYALKHYKQPDVLILGMGNDG 139 (232)
T ss_dssp TSTTCHHHHHHHHTSSGGGGGSEECCSSCTTCCGGGCCHHHHHHHHHHHCCCCSEEEECCCTTS
T ss_pred CChHHHHHHHHHHhccCCCccceEecCCCCCCChhhHHHHHHHHHHHhhCCCCCEEEEccCCCC
Confidence 2233 3344433 2222222211111 1222 2 334445554 4899999996654
No 96
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=28.55 E-value=2.3e+02 Score=22.72 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-ceEEEecC------chhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC
Q 030189 15 LKTKYNNAINVIQRTLALYSIE-EVAFSFNG------GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA 87 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~-~i~va~SG------GKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~ 87 (181)
++...+-.+++++.+-+..+++ .+.|=+|. |-+-.-.+.++..+.. ..+..+++..|..
T Consensus 198 lenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~--------------~Gvd~i~vs~g~~ 263 (349)
T 3hgj_A 198 LENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKE--------------LGVDLLDCSSGGV 263 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHH--------------TTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHH--------------cCCCEEEEecCCc
Confidence 6666666777777776666654 47777774 5554444566555421 1245555553311
Q ss_pred --------ch-HHHHHHHHHhhhcCceEEEEcc-cHHHHHHHHHHhCCCcEEEEee
Q 030189 88 --------FP-EINSFTYDTASKYVLQLDIIRS-DFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 88 --------fp-e~~~f~~~~~~~~~l~~~~~~~-~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
.+ ...+++.++.+..++++..... .-.+..++++++...+++.+|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR 319 (349)
T 3hgj_A 264 VLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGR 319 (349)
T ss_dssp CSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEEST
T ss_pred CcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecH
Confidence 11 2456778888878888766543 1134566777765588888885
No 97
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=27.97 E-value=22 Score=23.36 Aligned_cols=12 Identities=0% Similarity=-0.236 Sum_probs=9.4
Q ss_pred HHHHHHHhcccc
Q 030189 168 RLLINNKLFGFI 179 (181)
Q Consensus 168 ~dVw~yi~~~~~ 179 (181)
.-+|.||+.|++
T Consensus 34 k~lW~YIK~n~L 45 (93)
T 1v31_A 34 AAIWHYVKARKL 45 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHccC
Confidence 458999998864
No 98
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=27.77 E-value=22 Score=23.35 Aligned_cols=12 Identities=8% Similarity=-0.178 Sum_probs=9.5
Q ss_pred HHHHHHHhcccc
Q 030189 168 RLLINNKLFGFI 179 (181)
Q Consensus 168 ~dVw~yi~~~~~ 179 (181)
.-+|.||+.|++
T Consensus 34 k~lW~YIK~n~L 45 (93)
T 1uhr_A 34 QALWQYIKTHKL 45 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhccC
Confidence 358999998864
No 99
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=27.34 E-value=2.4e+02 Score=22.52 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.+...+....+.+|+++..+..
T Consensus 113 ~~y~~~~~~~~~~~~~~g~~~~~v~~ 138 (392)
T 3qhx_A 113 DAYGGTFRLIDKVFTGWNVEYTPVAL 138 (392)
T ss_dssp TCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred CCcchHHHHHHHHHHhcCcEEEEeCC
Confidence 44677777777777778887776654
No 100
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=27.25 E-value=1.3e+02 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.3
Q ss_pred CCceEEEecCchhHHHHHHHHH
Q 030189 35 IEEVAFSFNGGKDSTVLLHLLR 56 (181)
Q Consensus 35 ~~~i~va~SGGKDS~vll~L~~ 56 (181)
..+++|=+..||+|+++.-+++
T Consensus 102 ~~pVlvHC~sG~Rs~~l~al~l 123 (156)
T 2f46_A 102 EYPVLAYCRTGTRCSLLWGFRR 123 (156)
T ss_dssp CSSEEEECSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 3688898999999996644433
No 101
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=27.05 E-value=1.5e+02 Score=22.42 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=60.3
Q ss_pred CchHHHHHHHH-HHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCC---
Q 030189 11 DDRRLKTKYNN-AINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNS--- 86 (181)
Q Consensus 11 ~~~~l~~~~~~-a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~--- 86 (181)
+...+.....+ ..+.++.++..- ++..+++|||.-=..+...+.+... .. .++.++++|.-.
T Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~--~~~~l~lsgGstp~~~y~~L~~~~i--dw----------~~v~~f~~DEr~vp~ 78 (233)
T 3nwp_A 13 TPSALEQQLASKIASQLQEAVDAR--GKASLVVSGGSTPLKLFQLLSMKSI--DW----------SDVYITLADERWVEA 78 (233)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH--SCEEEEECCSSTTHHHHHHHHHCCS--CG----------GGEEEEESEEESSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHHHhcCC--Ch----------hHeEEEeCeecccCC
Confidence 34455555443 345566666664 5789999999776777776654210 00 357778888532
Q ss_pred CchH-HHHHHHH-HhhhcCceEEEEc-----ccHHHHHHHH---HHhC--CCcEEEEeeeCCC
Q 030189 87 AFPE-INSFTYD-TASKYVLQLDIIR-----SDFKSGLEAL---LNAK--PIRAIFLGVRIGD 137 (181)
Q Consensus 87 ~fpe-~~~f~~~-~~~~~~l~~~~~~-----~~~k~~l~~~---~~~~--~~~~~i~G~R~~e 137 (181)
+.|+ .+.++++ +-+....+-..+. .+..+...+| +++. +.+++++|+=.|-
T Consensus 79 ~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dG 141 (233)
T 3nwp_A 79 DADASNERLVREHLLQNRASNAKFRGLKNMFSTAEAGADMAAESLSNFPRPFDVVVLGMGNDG 141 (233)
T ss_dssp TSTTCHHHHHHHHTSSGGGGGSEECCSCCSSSSHHHHHHHHHHHTTTSCSSBSEEEECCCTTS
T ss_pred CChHHHHHHHHHHhhccCCccceEEcCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEccCCCC
Confidence 2233 2334333 2233222212221 1334444444 4443 5799999986553
No 102
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=26.84 E-value=2.6e+02 Score=23.07 Aligned_cols=20 Identities=0% Similarity=-0.034 Sum_probs=11.6
Q ss_pred HHHHHHHHh--CCCcEEEEeee
Q 030189 115 SGLEALLNA--KPIRAIFLGVR 134 (181)
Q Consensus 115 ~~l~~~~~~--~~~~~~i~G~R 134 (181)
+.+.++.++ ++..+++-...
T Consensus 200 ~~i~~ia~~~~~g~~livD~a~ 221 (427)
T 3hvy_A 200 AEIIKSIREVNENVIVFVDNCY 221 (427)
T ss_dssp HHHHHHHHHHCSSSEEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEECCc
Confidence 345566666 56666666543
No 103
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=26.69 E-value=2e+02 Score=21.48 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=42.4
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc-c---
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS-D--- 112 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~-~--- 112 (181)
+++|-+||+ .+-+..|+..... +..+.++..|..|..... ..+.++++|+++..+.+ +
T Consensus 9 ri~vl~SG~--gsnl~all~~~~~----------~~l~~~I~~Visn~~~a~------~l~~A~~~gIp~~~~~~~~~~~ 70 (209)
T 4ds3_A 9 RVVIFISGG--GSNMEALIRAAQA----------PGFPAEIVAVFSDKAEAG------GLAKAEAAGIATQVFKRKDFAS 70 (209)
T ss_dssp EEEEEESSC--CHHHHHHHHHHTS----------TTCSEEEEEEEESCTTCT------HHHHHHHTTCCEEECCGGGSSS
T ss_pred cEEEEEECC--cHHHHHHHHHHHc----------CCCCcEEEEEEECCcccH------HHHHHHHcCCCEEEeCccccCC
Confidence 688888887 3333344443321 111124555555543322 13567889999988754 1
Q ss_pred ---HHHHHHHHHHhCCCcEEEE
Q 030189 113 ---FKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 113 ---~k~~l~~~~~~~~~~~~i~ 131 (181)
+.+.+.+.+++.+.+++++
T Consensus 71 r~~~d~~~~~~l~~~~~Dliv~ 92 (209)
T 4ds3_A 71 KEAHEDAILAALDVLKPDIICL 92 (209)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEE
Confidence 2345666666666665554
No 104
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=26.60 E-value=2.7e+02 Score=22.87 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=16.8
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.+........+.+|+++..+..
T Consensus 129 ~~y~~~~~~~~~~~~~~G~~~~~v~~ 154 (430)
T 3ri6_A 129 RLFGHTLSLFQKTLPSFGIEVRFVDV 154 (430)
T ss_dssp TCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred CCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 34667777666566667777666653
No 105
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=26.06 E-value=1.1e+02 Score=24.15 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=40.6
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc---
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD--- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--- 112 (181)
.+++|-.||+ ++-+-.|+.+... |..+.++.+|..|... + +.+.++++|+++..+...
T Consensus 89 ~ri~vl~Sg~--g~nl~~ll~~~~~----------g~l~~~i~~Visn~~~--a-----~~~~A~~~gIp~~~~~~~~~~ 149 (287)
T 3nrb_A 89 KKVVIMVSKF--DHCLGDLLYRHRL----------GELDMEVVGIISNHPR--E-----ALSVSLVGDIPFHYLPVTPAT 149 (287)
T ss_dssp CEEEEEECSC--CHHHHHHHHHHHH----------TSSCCEEEEEEESSCG--G-----GCCCCCCTTSCEEECCCCGGG
T ss_pred cEEEEEEeCC--CcCHHHHHHHHHC----------CCCCeEEEEEEeCChH--H-----HHHHHHHcCCCEEEEeccCcc
Confidence 3677777876 3444455544321 1111245555555432 1 334577888888776421
Q ss_pred ---HHHHHHHHHHhCCCcEEEE
Q 030189 113 ---FKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 113 ---~k~~l~~~~~~~~~~~~i~ 131 (181)
+.+.+.+.+++.+.+++++
T Consensus 150 r~~~~~~~~~~l~~~~~Dlivl 171 (287)
T 3nrb_A 150 KAAQESQIKNIVTQSQADLIVL 171 (287)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEE
T ss_pred hhhHHHHHHHHHHHhCCCEEEh
Confidence 2234556666656665554
No 106
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=25.97 E-value=21 Score=23.97 Aligned_cols=11 Identities=0% Similarity=-0.318 Sum_probs=8.5
Q ss_pred HHHHHHhcccc
Q 030189 169 LLINNKLFGFI 179 (181)
Q Consensus 169 dVw~yi~~~~~ 179 (181)
-||.||+.|++
T Consensus 43 ~lW~YIK~nnL 53 (101)
T 1v32_A 43 TIAKYISKEGL 53 (101)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhhcC
Confidence 48999988764
No 107
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=25.94 E-value=54 Score=23.56 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceE--EE-ecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCch--H-H
Q 030189 18 KYNNAINVIQRTLALYSIEEVA--FS-FNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFP--E-I 91 (181)
Q Consensus 18 ~~~~a~~~i~~~~~~~~~~~i~--va-~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fp--e-~ 91 (181)
.+.++.+.|+..+.. .+- -. ..+=+|+++|.+|+-...+ ..++.|+-.++..|. | +
T Consensus 12 ~~~e~~~WIe~~l~~----~l~~~~~l~~~LkdGvvLCkL~N~l~P--------------~~i~kI~~~~~~~f~~~eNI 73 (159)
T 1p2x_A 12 RVDEAKKWIEECLGT----DLGPTSTFEQSLRNGVVLALLVQKFQP--------------DKLIKIFYSNELQFRHSDNI 73 (159)
T ss_dssp HHHHHHHHHHHHHTS----CCCCGGGHHHHTTTSHHHHHHHHHHCT--------------TSCCCCCCCSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHhCC----CCCChHHHHHHHcchHHHHHHHHHhCC--------------CCccccccccCCcchHHHHH
Confidence 345666666666532 111 00 1112799999999988742 123444433344563 3 4
Q ss_pred HHHHHHHhhhcCceEEE
Q 030189 92 NSFTYDTASKYVLQLDI 108 (181)
Q Consensus 92 ~~f~~~~~~~~~l~~~~ 108 (181)
..|++. ++.+|++-..
T Consensus 74 ~~FL~a-~~~~Gv~~~~ 89 (159)
T 1p2x_A 74 NKFLDF-IHGIGLPEIF 89 (159)
T ss_dssp HHHHHH-HHHTTCCGGG
T ss_pred HHHHHH-HHHcCCCccc
Confidence 455665 5689987533
No 108
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=25.88 E-value=2.8e+02 Score=22.86 Aligned_cols=18 Identities=11% Similarity=0.074 Sum_probs=9.9
Q ss_pred HHHHHHHh--CCCcEEEEee
Q 030189 116 GLEALLNA--KPIRAIFLGV 133 (181)
Q Consensus 116 ~l~~~~~~--~~~~~~i~G~ 133 (181)
.+.++.++ ++.-+++-..
T Consensus 201 ~i~~la~~~~~g~~livD~a 220 (427)
T 3i16_A 201 SIVDCVKNIRKDIICFVDNC 220 (427)
T ss_dssp HHHHHHHHHCTTSEEEEECT
T ss_pred HHHHHHHHhCCCCEEEEECC
Confidence 45555666 5555555544
No 109
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=25.85 E-value=1.2e+02 Score=20.08 Aligned_cols=57 Identities=4% Similarity=-0.093 Sum_probs=36.8
Q ss_pred EEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 39 AFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 39 ~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
+...+ .+++..++..+.++... ..++.++.|.|-+|. -+...++++.+|+......|
T Consensus 30 ~~~~~-~~~~~~~~~~l~~~~~~-------------~gp~~i~sDnG~~f~--s~~~~~~~~~~gi~~~~~~p 86 (152)
T 3kks_A 30 AQVIP-EETALQVALCILQLIQR-------------YTVLHLHSDNGPCFT--AHRIENLCKYLGITKTTGIP 86 (152)
T ss_dssp EEEES-SSCHHHHHHHHHHHHHH-------------SCCSEEEECSCHHHH--SHHHHHHHHHTTCEEEESSC
T ss_pred EEEeC-CcCHHHHHHHHHHHHHH-------------hCCcEEecCCchHhh--HHHHHHHHHHcCCeecccCC
Confidence 33343 66776666666665431 125779999998873 23356667889998876655
No 110
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=25.77 E-value=2.1e+02 Score=21.30 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=42.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc---
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD--- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--- 112 (181)
.+++|-|||.-+..+ .++..... +....++.+|..+.... .+.+.++++|+++..+.+.
T Consensus 4 ~ki~vl~sG~g~~~~--~~l~~l~~----------~~l~~~I~~Vit~~~~~------~v~~~A~~~gIp~~~~~~~~~~ 65 (212)
T 3av3_A 4 KRLAVFASGSGTNFQ--AIVDAAKR----------GDLPARVALLVCDRPGA------KVIERAARENVPAFVFSPKDYP 65 (212)
T ss_dssp EEEEEECCSSCHHHH--HHHHHHHT----------TCCCEEEEEEEESSTTC------HHHHHHHHTTCCEEECCGGGSS
T ss_pred cEEEEEEECCcHHHH--HHHHHHHh----------CCCCCeEEEEEeCCCCc------HHHHHHHHcCCCEEEeCccccc
Confidence 368888998755432 33333221 00012344455443221 3556678899998876652
Q ss_pred ----HHHHHHHHHHhCCCcEEEE
Q 030189 113 ----FKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 113 ----~k~~l~~~~~~~~~~~~i~ 131 (181)
+.+.+.+.+++.+.+++++
T Consensus 66 ~~~~~~~~~~~~l~~~~~Dliv~ 88 (212)
T 3av3_A 66 SKAAFESEILRELKGRQIDWIAL 88 (212)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEE
T ss_pred chhhhHHHHHHHHHhcCCCEEEE
Confidence 2335566666666666554
No 111
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=25.13 E-value=2.8e+02 Score=22.57 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.+...+....+.+|+++..+..
T Consensus 129 ~~y~~~~~~~~~~l~~~G~~v~~v~~ 154 (415)
T 2fq6_A 129 TAYEPSQDFCSKILSKLGVTTSWFDP 154 (415)
T ss_dssp TSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred CCchHHHHHHHHHHHHcCcEEEEECC
Confidence 46778888777777778888777653
No 112
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=24.74 E-value=94 Score=21.30 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 45 GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 45 GKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
.+++..+...+.++...+ | ....++.|.|-+|- -....++++.+|+......|
T Consensus 48 ~~~~~~v~~~l~~~~~~~--------g----~p~~i~sDnG~~f~--s~~~~~~~~~~gi~~~~~~p 100 (162)
T 1cxq_A 48 RVTSVAAQHHWATAIAVL--------G----RPKAIKTDNGSCFT--SKSTREWLARWGIAHTTGIP 100 (162)
T ss_dssp SCCHHHHHHHHHHHHHHH--------C----CCSEEECCSCHHHH--SHHHHHHHHHHTCEEECCCC
T ss_pred CccHHHHHHHHHHHHHHH--------C----CCeEEEeCCchhhh--hHHHHHHHHHCCCeEeeCCC
Confidence 566666666666664322 1 23588999998873 22345566778988766554
No 113
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=23.86 E-value=19 Score=26.04 Aligned_cols=19 Identities=5% Similarity=0.247 Sum_probs=16.8
Q ss_pred EEecccCCchHHHHHHHhc
Q 030189 158 RVNPILDWSYRLLINNKLF 176 (181)
Q Consensus 158 ~i~Pi~~Wt~~dVw~yi~~ 176 (181)
+-+|+.+||.+||-.||..
T Consensus 74 ~~s~V~nWTvedV~~WL~~ 92 (150)
T 2l5y_A 74 KTSEVHNWTLEDTLQWLIE 92 (150)
T ss_dssp HTSHHHHCCHHHHHHHHHH
T ss_pred ccCcchhCCHHHHHHHHHH
Confidence 5678999999999999876
No 114
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=23.84 E-value=1.2e+02 Score=22.43 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=36.8
Q ss_pred EEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 39 AFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 39 ~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
+...+ .+++..+...+.++...+ | ....++.|.|-+|. -....++++.+|+......|
T Consensus 42 ~~~~~-~~~~~~v~~~l~~~~~~~--------g----~p~~i~sDnG~~f~--s~~~~~~~~~~gI~~~~~~p 99 (238)
T 1c0m_A 42 VTQHG-RVTSVAVQHHWATAIAVL--------G----RPKAIKTDNGSCFT--SKSTREWLARWGIAHTTGIP 99 (238)
T ss_dssp EEEES-SCCHHHHHHHHHHHHHHH--------C----CCSEEEECSCHHHH--SHHHHHHHHHHTCEEEECCS
T ss_pred EEEcc-CCCHHHHHHHHHHHHHHh--------C----CCcEEEECCCCccc--cHHHHHHHHHCCCEEEecCC
Confidence 33444 677777777666665322 1 24589999998873 22345566778998877665
No 115
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=23.56 E-value=3.4e+02 Score=23.09 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHH
Q 030189 14 RLKTKYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINS 93 (181)
Q Consensus 14 ~l~~~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~ 93 (181)
.+++.....++.+..........+++|. | |+..++-|++.+.. .-+.++.+-++..-++..+
T Consensus 339 ~i~~er~~~~~~l~d~~~~l~Gkrv~i~--g--d~~~~~~la~~L~E--------------lGm~vv~v~~~~~~~~~~~ 400 (519)
T 1qgu_B 339 ALTLERGRLVDMMLDSHTWLHGKKFGLY--G--DPDFVMGLTRFLLE--------------LGCEPTVILSHNANKRWQK 400 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEE--S--CHHHHHHHHHHHHH--------------TTCEEEEEEETTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEE--C--CchHHHHHHHHHHH--------------CCCEEEEEEeCCCCHHHHH
Confidence 3444444555555554444444566554 4 45555555544421 1245555555544566666
Q ss_pred HHHHHhhhcC--ceE-EEEcccHHHHHHHHHHhCCCcEEEEeee
Q 030189 94 FTYDTASKYV--LQL-DIIRSDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 94 f~~~~~~~~~--l~~-~~~~~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
.++++.+.+. ... +...++..+ +.+++++.+.+++|.+.+
T Consensus 401 ~~~~ll~~~~~~~~~~v~~~~d~~~-l~~~i~~~~pDLiig~~~ 443 (519)
T 1qgu_B 401 AMNKMLDASPYGRDSEVFINCDLWH-FRSLMFTRQPDFMIGNSY 443 (519)
T ss_dssp HHHHHHHHSTTCTTCEEEESCCHHH-HHHHHHHHCCSEEEECGG
T ss_pred HHHHHHHhcCCCCCCEEEECCCHHH-HHHHHhhcCCCEEEECcc
Confidence 6677666653 223 334455444 455555556788887654
No 116
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=23.50 E-value=3.3e+02 Score=22.80 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHH
Q 030189 18 KYNNAINVIQRTLALYSIEEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYD 97 (181)
Q Consensus 18 ~~~~a~~~i~~~~~~~~~~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~ 97 (181)
.+.+++..+++.++..| .++.+-. |.-..++..|+.+. .+..||.+...+. ...+..++
T Consensus 89 Fl~~sL~~L~~~L~~~G-~~L~v~~--g~~~~~l~~l~~~~-----------------~~~~V~~~~~~~~-~~~~~~~~ 147 (482)
T 2xry_A 89 FMLKGLQELEVSLSRKK-IPSFFLR--GDPGEKISRFVKDY-----------------NAGTLVTDFSPLR-IKNQWIEK 147 (482)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEEEE--SCHHHHHHHHHHHT-----------------TCSEEEEECCCSH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CcEEEEe--CCHHHHHHHHHHHc-----------------CCCEEEEecccch-hHHHHHHH
Confidence 45578888888898887 4565544 44445555555543 3677888876654 44555777
Q ss_pred HhhhcCceEEEEcc
Q 030189 98 TASKYVLQLDIIRS 111 (181)
Q Consensus 98 ~~~~~~l~~~~~~~ 111 (181)
+++.+|++++.+..
T Consensus 148 v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 148 VISGISIPFFEVDA 161 (482)
T ss_dssp HHHHCCSCEEEECC
T ss_pred HHHHcCCEEEEEeC
Confidence 77778999887764
No 117
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.29 E-value=2.7e+02 Score=21.87 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=43.2
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc---
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD--- 112 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~--- 112 (181)
.+++|-.||+ ++-+-.|+.+... |..+.++.+|..|... .. .+++++|+++..+...
T Consensus 96 ~ri~vl~Sg~--g~~l~~ll~~~~~----------g~l~~~i~~Visn~~~----~~----~~A~~~gIp~~~~~~~~~~ 155 (292)
T 3lou_A 96 PKVLIMVSKL--EHCLADLLFRWKM----------GELKMDIVGIVSNHPD----FA----PLAAQHGLPFRHFPITADT 155 (292)
T ss_dssp CEEEEEECSC--CHHHHHHHHHHHH----------TSSCCEEEEEEESSST----TH----HHHHHTTCCEEECCCCSSC
T ss_pred CEEEEEEcCC--CcCHHHHHHHHHc----------CCCCcEEEEEEeCcHH----HH----HHHHHcCCCEEEeCCCcCC
Confidence 4677777876 3445555554421 1112345666665533 22 3578899998876432
Q ss_pred ---HHHHHHHHHHhCCCcEEEE
Q 030189 113 ---FKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 113 ---~k~~l~~~~~~~~~~~~i~ 131 (181)
+.+.+.+.+++.+.+++++
T Consensus 156 r~~~~~~~~~~l~~~~~Dlivl 177 (292)
T 3lou_A 156 KAQQEAQWLDVFETSGAELVIL 177 (292)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEe
Confidence 2335666676666666555
No 118
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=22.96 E-value=66 Score=19.70 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCCceEEEecC
Q 030189 25 VIQRTLALYSIEEVAFSFNG 44 (181)
Q Consensus 25 ~i~~~~~~~~~~~i~va~SG 44 (181)
.+++++++++..+++++.+|
T Consensus 6 LLdktL~~WKg~rvAv~vg~ 25 (71)
T 1ycy_A 6 LLEKVLKEWKGHKVAVSVGG 25 (71)
T ss_dssp HHHHHHHHHTTSEEEEEEC-
T ss_pred HHHHHHHHhCCcEEEEEecC
Confidence 57788888887889998854
No 119
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=22.46 E-value=69 Score=24.05 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCch--H-HHHHHHHHhhhcCceEEE
Q 030189 46 KDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFP--E-INSFTYDTASKYVLQLDI 108 (181)
Q Consensus 46 KDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fp--e-~~~f~~~~~~~~~l~~~~ 108 (181)
+|.++|.+|+-.+.+ ..++.|+-.+...|. | +..|++. ++.+|++-..
T Consensus 83 rDGvvLCkLiN~l~P--------------~sv~kI~~~s~~~f~~~eNI~~FL~a-c~~~Gvp~~~ 133 (203)
T 1p5s_A 83 RNGVVLALLVQKFQP--------------DKLIKIFYSNELQFRHSDNINKFLDF-IHGIGLPEIF 133 (203)
T ss_dssp TTSHHHHHHHHHHCT--------------TSCCCCCCCSSSCCCHHHHHHHHHHH-HHHTTCCGGG
T ss_pred cchHHHHHHHHHhCC--------------CCcccccCCCCCcchHHHHHHHHHHH-HHHcCCCccc
Confidence 799999999988742 123444433444553 3 4455555 6789987644
No 120
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=22.33 E-value=2.7e+02 Score=23.27 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=53.1
Q ss_pred HhcCCC--ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC-chHHHHHHHHHhhhcCceEE
Q 030189 31 ALYSIE--EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA-FPEINSFTYDTASKYVLQLD 107 (181)
Q Consensus 31 ~~~~~~--~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~-fpe~~~f~~~~~~~~~l~~~ 107 (181)
+.||.. ..+++||.|-|-++.+ +..... .+. .+.+..++.+..+.. ..+..+.++++.+ -|+.+.
T Consensus 325 ~~fg~~~~~PavGFaig~eRl~~~--l~~~~~-~~~--------~~~~~~v~v~~~~~~~~~~a~~la~~LR~-~Gi~ve 392 (456)
T 3lc0_A 325 TTYGSPTPIPCAGFGFGDCVIVEL--LQEKRL-LPD--------IPHVVDDVVIPFDESMRPHALAVLRRLRD-AGRSAD 392 (456)
T ss_dssp HHTTCSSCCCEEEEEEESSHHHHH--HHHTTC-CCC--------CCCCEEEEEEESSGGGHHHHHHHHHHHHH-TTCCEE
T ss_pred HHhCCCCCCCEEEEEeEHHHHHHH--HHhcCC-CCc--------cCCCCcEEEEEcCHHHHHHHHHHHHHHHH-CCCeEE
Confidence 445544 6899999999875543 332210 000 012345555555543 3566777777755 377776
Q ss_pred EEc--ccHHHHHHHHHHhCCCcEEEEeee
Q 030189 108 IIR--SDFKSGLEALLNAKPIRAIFLGVR 134 (181)
Q Consensus 108 ~~~--~~~k~~l~~~~~~~~~~~~i~G~R 134 (181)
... .++++.++.+-+..-..++++|..
T Consensus 393 ~~~~~~slkkq~k~A~k~ga~~vviiGe~ 421 (456)
T 3lc0_A 393 IILDKKKVVQAFNYADRVGAVRAVLVAPE 421 (456)
T ss_dssp ECCSCCCHHHHHHHHHHTTEEEEEEECHH
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEECCc
Confidence 542 357887777766533567888854
No 121
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=22.21 E-value=1.3e+02 Score=23.79 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=39.4
Q ss_pred ceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEccc----
Q 030189 37 EVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSD---- 112 (181)
Q Consensus 37 ~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~---- 112 (181)
+++|-.||+ ++-+-.|+.+... |..+.++.+|..|.+ |+ +.+.++++|+++..+...
T Consensus 91 ri~vl~Sg~--g~nl~~ll~~~~~----------g~l~~~i~~Visn~p---~~----~~~~A~~~gIp~~~~~~~~~~r 151 (288)
T 3obi_A 91 KVMLLVSQS--DHCLADILYRWRV----------GDLHMIPTAIVSNHP---RE----TFSGFDFGDIPFYHFPVNKDTR 151 (288)
T ss_dssp EEEEEECSC--CHHHHHHHHHHHT----------TSSCEEEEEEEESSC---GG----GSCCTTTTTCCEEECCCCTTTH
T ss_pred EEEEEEcCC--CCCHHHHHHHHHC----------CCCCeEEEEEEcCCC---hh----HHHHHHHcCCCEEEeCCCcccH
Confidence 677777876 3444455544421 111123444554441 11 224577888888776421
Q ss_pred --HHHHHHHHHHhCCCcEEEE
Q 030189 113 --FKSGLEALLNAKPIRAIFL 131 (181)
Q Consensus 113 --~k~~l~~~~~~~~~~~~i~ 131 (181)
+.+.+.+.+++.+.+++++
T Consensus 152 ~~~~~~~~~~l~~~~~Dlivl 172 (288)
T 3obi_A 152 RQQEAAITALIAQTHTDLVVL 172 (288)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEh
Confidence 2234556666656665554
No 122
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=22.19 E-value=21 Score=25.76 Aligned_cols=19 Identities=5% Similarity=0.342 Sum_probs=16.6
Q ss_pred EEecccCCchHHHHHHHhc
Q 030189 158 RVNPILDWSYRLLINNKLF 176 (181)
Q Consensus 158 ~i~Pi~~Wt~~dVw~yi~~ 176 (181)
+-+|+.+||.+||-.||..
T Consensus 74 ~~s~V~nWTvedV~~WL~~ 92 (150)
T 2k60_A 74 KSSEVYNWTVDEVVQWLIT 92 (150)
T ss_dssp HHSHHHHCCHHHHHHHHHH
T ss_pred ccCccccCCHHHHHHHHHH
Confidence 5679999999999999854
No 123
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=21.74 E-value=3.1e+02 Score=21.88 Aligned_cols=92 Identities=9% Similarity=0.045 Sum_probs=49.4
Q ss_pred CceEEEecCchhHHHHHHHHHHHhhhhcCCCCCCCCCCC-CCceEEEecCC---CCchH-HHHHHHHHhhhcCce----E
Q 030189 36 EEVAFSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLT-FPIRTIYFESN---SAFPE-INSFTYDTASKYVLQ----L 106 (181)
Q Consensus 36 ~~i~va~SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~-~~~~~v~idtg---~~fpe-~~~f~~~~~~~~~l~----~ 106 (181)
++..+++|||.-=..+...+... .. +..+ .++.++++|.- ...|+ .+.+++.+-+..+++ +
T Consensus 60 ~~~~l~LsgGsTP~~ly~~L~~~----~~------~~idw~~V~~f~~DEr~vp~d~~~Sn~~~~~~l~~~v~i~~~~~i 129 (312)
T 3e15_A 60 GHVVIGLSGGKTPIDVYKNIALV----KD------IKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQL 129 (312)
T ss_dssp CCCEEEECCSHHHHHHHHHHTTC----CS------SCCCGGGCEEEESEEECCTTCCTTCHHHHHHHHHHHTTCCHHHHE
T ss_pred CCEEEEEeCCCCHHHHHHHHHHh----hc------cCCCccceEEEEeeeecCCCCChHHHHHHHHHHHhcCCCCccccE
Confidence 57899999996666666655421 11 0111 35788888831 12232 233445666666664 3
Q ss_pred EEEcc--cHHHH-------HHHHHHh-CCCcEEEEeeeCCC
Q 030189 107 DIIRS--DFKSG-------LEALLNA-KPIRAIFLGVRIGD 137 (181)
Q Consensus 107 ~~~~~--~~k~~-------l~~~~~~-~~~~~~i~G~R~~e 137 (181)
+.... +..+. +.+.++. .+.+++++|+=.|-
T Consensus 130 ~~~~g~~d~~~~a~~Ye~~I~~~~~~~g~~DL~LLGiG~DG 170 (312)
T 3e15_A 130 YRPDTSKNIVECVRDYNEKIKNMVKKYTKVDIAILGMGSDF 170 (312)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHHHHHCSCCEEEECCCTTS
T ss_pred EcCCCCcCHHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCC
Confidence 33322 22222 3332233 46999999996553
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=21.54 E-value=80 Score=24.09 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=30.0
Q ss_pred CceEEEecCCCCch-HHHHHHHHHhhhcCceEEEEc--ccHH
Q 030189 76 PIRTIYFESNSAFP-EINSFTYDTASKYVLQLDIIR--SDFK 114 (181)
Q Consensus 76 ~~~~v~idtg~~fp-e~~~f~~~~~~~~~l~~~~~~--~~~k 114 (181)
+..+|.||..+=|+ +..+++.+++ ..|+++.++. .+|+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la-~~gi~Vi~~GLd~DF~ 141 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLS-ADGHRVIVAGLDMDFR 141 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHH-HTTCEEEEEEESBCTT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHH-HCCCEEEEeecccccc
Confidence 56799999988776 7999999988 6899988865 3444
No 125
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.29 E-value=3e+02 Score=27.55 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=43.2
Q ss_pred cCchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCCchHHHHHHHHHhhhcCceE---EEEcccHH----H
Q 030189 43 NGGKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSAFPEINSFTYDTASKYVLQL---DIIRSDFK----S 115 (181)
Q Consensus 43 SGGKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~---~~~~~~~k----~ 115 (181)
|.|| .++++|.++.+.. .-=.++|+|......-.+ ++.+|+++ .+..|+.. +
T Consensus 1441 ~sGk-ttl~~~~~a~~~~--------------~g~~~~~i~~e~~~~~~~------~~~~Gv~~~~l~~~~p~~~e~~l~ 1499 (1706)
T 3cmw_A 1441 SSGK-TTLTLQVIAAAQR--------------EGKTCAFIDAEHALDPIY------ARKLGVDIDNLLCSQPDTGEQALE 1499 (1706)
T ss_dssp TSSH-HHHHHHHHHHHHH--------------TTCCEEEECTTSCCCHHH------HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHh--------------cCCeEEEEecCCCCCHHH------HHHcCCCHHHeEEeCCCcHHHHHH
Confidence 5566 5667787777653 124778999776553333 56788874 66777643 3
Q ss_pred HHHHHHHhCCCcEEE
Q 030189 116 GLEALLNAKPIRAIF 130 (181)
Q Consensus 116 ~l~~~~~~~~~~~~i 130 (181)
.++..+++...++++
T Consensus 1500 ~~~~~~~s~~~~~vv 1514 (1706)
T 3cmw_A 1500 ICDALARSGAVDVIV 1514 (1706)
T ss_dssp HHHHHHHHTCCSEEE
T ss_pred HHHHHHHcCCCCEEE
Confidence 466777776777765
No 126
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=21.21 E-value=3.2e+02 Score=21.90 Aligned_cols=104 Identities=11% Similarity=0.139 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-ceEEEecC------chhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCceEEEecCCCC
Q 030189 15 LKTKYNNAINVIQRTLALYSIE-EVAFSFNG------GKDSTVLLHLLRAGYFLHKGEQSCSNGSLTFPIRTIYFESNSA 87 (181)
Q Consensus 15 l~~~~~~a~~~i~~~~~~~~~~-~i~va~SG------GKDS~vll~L~~~~~~~~~~~~~~~~~~~~~~~~~v~idtg~~ 87 (181)
|+....-.+++++.+-+..+++ ++.|=+|. |-+-.-.+.++..+.. . +..+.+..|..
T Consensus 189 lenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~--------------~-vd~i~vs~g~~ 253 (343)
T 3kru_A 189 IENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKD--------------K-VDLIDVSSGGL 253 (343)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTT--------------T-CSEEEEECCCS
T ss_pred hHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhc--------------c-ccEEeccCCce
Confidence 6666666777777777766654 67776664 4333444555555421 3 55566644321
Q ss_pred -------chH-HHHHHHHHhhhcCceEEEEcc-cHHHHHHHHHHhCCCcEEEEee
Q 030189 88 -------FPE-INSFTYDTASKYVLQLDIIRS-DFKSGLEALLNAKPIRAIFLGV 133 (181)
Q Consensus 88 -------fpe-~~~f~~~~~~~~~l~~~~~~~-~~k~~l~~~~~~~~~~~~i~G~ 133 (181)
.|. ...++.++.+..++++..... .-.+..++++++...+++.+|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR 308 (343)
T 3kru_A 254 LNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGR 308 (343)
T ss_dssp SCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESH
T ss_pred EeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHH
Confidence 221 356778888888888766653 1135567777765588888885
No 127
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=20.50 E-value=1.4e+02 Score=24.07 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=44.8
Q ss_pred CCceEEEecCCCCchHHHHHHHHHhhhcCceEEEEcccHHHHHHHHHHhCCCcEEEEeeeCCC
Q 030189 75 FPIRTIYFESNSAFPEINSFTYDTASKYVLQLDIIRSDFKSGLEALLNAKPIRAIFLGVRIGD 137 (181)
Q Consensus 75 ~~~~~v~idtg~~fpe~~~f~~~~~~~~~l~~~~~~~~~k~~l~~~~~~~~~~~~i~G~R~~e 137 (181)
.+++.+-+|+...| ...+.+.+.++|+.++.+..-+-.+.+.++.++...++++.+-...+
T Consensus 20 ~~i~l~i~d~d~~Y--~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~~dilli~e~~~~ 80 (373)
T 3fkq_A 20 MKIKVALLDKDKEY--LDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFNI 80 (373)
T ss_dssp CCEEEEEECSCHHH--HHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETTCCC
T ss_pred ceEEEEEEeCCHHH--HHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCCCCEEEEcchhhh
Confidence 57999999997777 33445556677877776665555777888888878899998865543
No 128
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=20.24 E-value=3.7e+02 Score=22.17 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=17.9
Q ss_pred CCchHHHHHHHHHhhhcCceEEEEcc
Q 030189 86 SAFPEINSFTYDTASKYVLQLDIIRS 111 (181)
Q Consensus 86 ~~fpe~~~f~~~~~~~~~l~~~~~~~ 111 (181)
..|+.++.++....+.+|+++..+..
T Consensus 161 ~~y~~~~~~~~~~~~~~G~~v~~v~~ 186 (445)
T 1qgn_A 161 DCYRKTRIFIETILPKMGITATVIDP 186 (445)
T ss_dssp TSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred CCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 45677777766666777777776654
Done!