BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030190
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
          Length = 399

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 33  SSVLLGGGIKLHDS---STISKKAQLSPLSFSASFRNHICRAAEYKF 76
           SSV LGGG+    S   +T +   QL P S + + R  +C+ AE+ F
Sbjct: 138 SSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSF 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,600,264
Number of Sequences: 62578
Number of extensions: 221233
Number of successful extensions: 616
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 3
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)