Query 030190
Match_columns 181
No_of_seqs 19 out of 21
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 09:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0212 Uncharacterized conser 59.5 28 0.00061 34.7 6.4 74 88-170 206-279 (675)
2 TIGR01743 purR_Bsub pur operon 56.9 4.9 0.00011 35.0 0.9 68 80-160 70-149 (268)
3 PRK09946 hypothetical protein; 56.5 11 0.00023 33.8 2.9 50 114-179 12-61 (270)
4 PF02771 Acyl-CoA_dh_N: Acyl-C 52.7 13 0.00028 25.4 2.2 23 122-148 48-70 (113)
5 PF07508 Recombinase: Recombin 50.9 22 0.00049 24.3 3.2 32 112-153 3-34 (102)
6 TIGR00214 lipB lipoate-protein 49.8 7.6 0.00016 32.2 0.8 17 128-144 57-73 (184)
7 PRK13762 tRNA-modifying enzyme 49.6 26 0.00056 30.5 4.1 23 131-153 138-161 (322)
8 PRK14348 lipoate-protein ligas 47.6 7.4 0.00016 33.2 0.5 17 128-144 86-102 (221)
9 COG0405 Ggt Gamma-glutamyltran 46.9 25 0.00054 33.8 3.9 50 122-175 124-173 (539)
10 smart00875 BACK BTB And C-term 46.4 68 0.0015 21.0 4.9 55 110-169 14-74 (101)
11 PRK14341 lipoate-protein ligas 46.4 7.5 0.00016 32.9 0.3 17 128-144 77-93 (213)
12 COG2137 OraA Uncharacterized p 46.1 21 0.00045 29.4 2.8 57 88-152 33-100 (174)
13 PRK14347 lipoate-protein ligas 43.6 10 0.00022 32.2 0.7 16 128-143 75-90 (209)
14 PRK14345 lipoate-protein ligas 43.3 8.4 0.00018 33.1 0.2 17 128-144 83-99 (234)
15 PRK14344 lipoate-protein ligas 41.5 11 0.00023 32.4 0.5 17 128-144 95-111 (223)
16 PF07487 SopE_GEF: SopE GEF do 41.2 28 0.00062 29.5 2.9 73 91-165 8-110 (165)
17 PRK09417 mogA molybdenum cofac 39.1 26 0.00056 28.9 2.4 14 150-163 131-144 (193)
18 PF11539 DUF3228: Protein of u 38.4 16 0.00035 31.5 1.1 40 130-169 151-194 (197)
19 PF14615 Rsa3: Ribosome-assemb 37.8 15 0.00032 24.9 0.7 21 90-112 1-21 (47)
20 PRK14343 lipoate-protein ligas 37.4 14 0.00029 32.1 0.5 16 128-143 87-102 (235)
21 PF13366 PDDEXK_3: PD-(D/E)XK 37.4 44 0.00095 26.2 3.3 42 107-156 2-45 (118)
22 PF04124 Dor1: Dor1-like famil 37.1 51 0.0011 28.5 4.0 62 88-162 226-295 (338)
23 PF00615 RGS: Regulator of G p 35.6 87 0.0019 20.7 4.1 27 107-135 41-67 (118)
24 COG1874 LacA Beta-galactosidas 35.5 44 0.00096 33.0 3.7 75 54-129 100-184 (673)
25 PRK14342 lipoate-protein ligas 35.4 15 0.00032 31.3 0.4 16 128-143 77-92 (213)
26 PF14300 DUF4375: Domain of un 34.9 53 0.0012 24.4 3.3 51 114-169 22-72 (123)
27 KOG1460 GDP-mannose pyrophosph 34.9 19 0.0004 33.9 1.0 15 124-138 129-143 (407)
28 PRK01037 trmD tRNA (guanine-N( 34.6 34 0.00075 31.6 2.7 40 127-166 53-100 (357)
29 PF01724 DUF29: Domain of unkn 34.5 1.2E+02 0.0027 23.7 5.4 68 85-152 71-139 (139)
30 COG5234 CIN1 Beta-tubulin fold 34.4 50 0.0011 34.2 3.9 71 77-147 674-746 (993)
31 PRK05917 DNA polymerase III su 34.0 1.1E+02 0.0025 26.9 5.6 62 105-170 195-257 (290)
32 PF03588 Leu_Phe_trans: Leucyl 33.0 37 0.0008 28.1 2.4 41 104-151 57-97 (173)
33 PF05728 UPF0227: Uncharacteri 31.9 1E+02 0.0023 24.9 4.8 68 73-148 30-99 (187)
34 cd00886 MogA_MoaB MogA_MoaB fa 31.5 43 0.00093 25.6 2.4 21 149-169 125-145 (152)
35 KOG3616 Selective LIM binding 31.3 74 0.0016 33.8 4.6 86 89-174 1416-1537(1636)
36 PRK14866 hypothetical protein; 30.9 50 0.0011 31.2 3.1 49 107-156 364-413 (451)
37 TIGR01366 serC_3 phosphoserine 30.5 80 0.0017 27.1 4.1 45 124-168 183-256 (361)
38 COG0321 LipB Lipoate-protein l 30.4 21 0.00046 31.1 0.6 18 127-144 82-99 (221)
39 cd00454 Trunc_globin Truncated 30.3 2E+02 0.0043 20.3 6.5 22 142-165 85-106 (116)
40 cd00758 MoCF_BD MoCF_BD: molyb 30.2 38 0.00082 25.2 1.8 16 149-164 112-127 (133)
41 PRK09213 pur operon repressor; 29.3 28 0.00062 30.4 1.2 70 80-160 72-151 (271)
42 PF07848 PaaX: PaaX-like prote 29.1 67 0.0014 22.8 2.8 38 119-164 9-46 (70)
43 smart00571 DDT domain in diffe 27.9 31 0.00068 23.6 1.0 30 116-149 7-40 (63)
44 smart00852 MoCF_biosynth Proba 27.7 41 0.0009 24.7 1.7 16 149-164 119-134 (135)
45 PRK14346 lipoate-protein ligas 27.5 24 0.00052 30.6 0.4 17 128-144 74-90 (230)
46 PRK00561 ppnK inorganic polyph 27.2 42 0.0009 29.0 1.8 37 86-135 11-47 (259)
47 TIGR00177 molyb_syn molybdenum 27.2 45 0.00098 25.3 1.8 15 150-164 126-140 (144)
48 PF07131 DUF1382: Protein of u 26.1 67 0.0015 23.5 2.4 24 78-101 27-50 (61)
49 PRK12341 putative acyl-CoA deh 25.3 62 0.0013 27.4 2.5 42 88-148 35-76 (381)
50 PF00994 MoCF_biosynth: Probab 24.6 40 0.00087 25.1 1.1 17 150-166 122-138 (144)
51 PF08167 RIX1: rRNA processing 24.3 3.5E+02 0.0075 21.1 6.5 66 84-163 19-90 (165)
52 TIGR02613 mob_myst_B mobile my 24.0 92 0.002 25.0 3.1 46 124-177 115-182 (186)
53 TIGR02909 spore_YkwD uncharact 23.3 1.4E+02 0.0031 21.8 3.8 24 149-172 19-45 (127)
54 KOG3968 Atrazine chlorohydrola 23.2 84 0.0018 30.1 3.1 75 79-167 82-161 (439)
55 PF13010 pRN1_helical: Primase 22.9 54 0.0012 27.1 1.6 84 85-176 10-126 (135)
56 PRK11119 proX glycine betaine 22.9 94 0.002 27.2 3.2 41 136-178 284-324 (331)
57 PF04652 DUF605: Vta1 like; I 22.0 71 0.0015 27.4 2.3 63 84-146 38-117 (380)
58 PRK08297 L-lysine aminotransfe 21.6 2.7E+02 0.0058 25.0 5.8 64 104-168 58-133 (443)
59 PF10281 Ish1: Putative stress 21.3 67 0.0014 19.9 1.5 22 141-162 8-30 (38)
60 smart00540 LEM in nuclear memb 20.7 72 0.0016 21.4 1.6 17 141-157 10-26 (44)
61 PRK09856 fructoselysine 3-epim 20.3 1.7E+02 0.0038 23.3 4.0 18 155-172 257-274 (275)
62 PF07707 BACK: BTB And C-termi 20.2 1.5E+02 0.0033 19.8 3.2 54 112-170 20-75 (103)
63 TIGR00066 g_glut_trans gamma-g 20.1 1.3E+02 0.0029 27.9 3.8 54 113-170 98-152 (516)
64 KOG0986 G protein-coupled rece 20.0 59 0.0013 32.1 1.5 55 73-128 111-167 (591)
No 1
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.47 E-value=28 Score=34.73 Aligned_cols=74 Identities=24% Similarity=0.387 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHHHHh
Q 030190 88 TQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQR 167 (181)
Q Consensus 88 TeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~ 167 (181)
+.-|-++|+++| ||+-+||-.+|--..++||+.-=.-|--+ -+.||...|--.---.-|.-.+-||.|-|.
T Consensus 206 l~~~ldGLf~~L------sD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 206 LPSLLDGLFNML------SDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQE 276 (675)
T ss_pred chHHHHHHHHHh------cCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHH
Confidence 344567778776 57778999999999999999744444332 223333333222222337888889999998
Q ss_pred hhh
Q 030190 168 HVD 170 (181)
Q Consensus 168 ~vD 170 (181)
+|.
T Consensus 277 fV~ 279 (675)
T KOG0212|consen 277 FVK 279 (675)
T ss_pred Hhc
Confidence 874
No 2
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=56.86 E-value=4.9 Score=34.99 Aligned_cols=68 Identities=22% Similarity=0.452 Sum_probs=48.7
Q ss_pred CCchhhHHHHHHHHHHHHHhhhh------------cccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhh
Q 030190 80 IPEFADSETQKFRTHLLNKLAKK------------DMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLN 147 (181)
Q Consensus 80 iPEFAd~ETeKFR~hLlkKLSkk------------D~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~ 147 (181)
||...+.|.++|=.+|..+|++. |.+++. ++...+.+++.+.+... + +|....++
T Consensus 70 ~p~~~~~~~~~~~~~l~~~l~~~~rilpgg~~~~s~ll~~P--~~l~~ig~~la~~~~~~--~---------iD~Vvgve 136 (268)
T TIGR01743 70 IPKMSQAEAEEFVEELCQSLSEPERILPGGYLYLTDILGKP--SILSKIGKILASVFAER--E---------IDAVMTVA 136 (268)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHCCCcccCCeEEechhhcCH--HHHHHHHHHHHHHhcCC--C---------CCEEEEEc
Confidence 68899999999999999999963 233333 45666666665554321 1 36666778
Q ss_pred hCCCCCchHHHHH
Q 030190 148 ERGLPGGPQAARA 160 (181)
Q Consensus 148 E~gLPGap~AARa 160 (181)
-+|+|.|..+|++
T Consensus 137 tkGIpLA~avA~~ 149 (268)
T TIGR01743 137 TKGIPLAYAVASV 149 (268)
T ss_pred cchHHHHHHHHHH
Confidence 8999998888875
No 3
>PRK09946 hypothetical protein; Provisional
Probab=56.48 E-value=11 Score=33.81 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=39.2
Q ss_pred hhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHHHHhhhhhhhhcccCC
Q 030190 114 GICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTGD 179 (181)
Q Consensus 114 ~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~~vDkDWk~Wt~~ 179 (181)
.+|+..|++||+.-=. =|+ +.|.+++|-+.|- +.||..-|+--|..|-.+
T Consensus 12 ~~~~~~yRWFlr~fp~-Gg~-----Y~~v~dALv~~gr----------~dwa~slv~y~~~~~~~~ 61 (270)
T PRK09946 12 RVGAVMYRWFLRHFPR-GGS-----YADIHHALIEEGY----------TDWAESLVEYAWKKWLAD 61 (270)
T ss_pred CcchhHHHHHHHhCCC-CCc-----HHHHHHHHHHhhh----------hhHHHHHHHHHHHhhhch
Confidence 5899999999998333 343 6788888877553 469999999999999765
No 4
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=52.68 E-value=13 Score=25.37 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=15.5
Q ss_pred HHhhhhcCCCceeecccchhHHHHhhh
Q 030190 122 TFLHSEYGGPGTLLVLPFIDMADTLNE 148 (181)
Q Consensus 122 ~FLh~eYgGpGTLlV~PF~DM~~~l~E 148 (181)
-.+-++|||.| -+++++...++|
T Consensus 48 ~~~p~~~GG~~----~~~~~~~~~~e~ 70 (113)
T PF02771_consen 48 LAVPEEYGGLG----LSPLELAIVLEE 70 (113)
T ss_dssp TTSCGGGTSEB-----THHHHHHHHHH
T ss_pred hhccccccCcc----hhhhhHHHHHHh
Confidence 33448899887 356777777776
No 5
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=50.90 E-value=22 Score=24.30 Aligned_cols=32 Identities=34% Similarity=0.682 Sum_probs=25.0
Q ss_pred HHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCC
Q 030190 112 VVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG 153 (181)
Q Consensus 112 VV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPG 153 (181)
=+.|..+||..|+ .-+| ...+++.|+++|+|-
T Consensus 3 ea~vVr~if~~~~-~g~s---------~~~I~~~ln~~gi~~ 34 (102)
T PF07508_consen 3 EAEVVREIFELYL-EGYS---------LRQIARELNEKGIPT 34 (102)
T ss_pred HHHHHHHHHHHHH-cCCC---------HHHHHHHHHhcCCcc
Confidence 3567789999999 4233 678999999999964
No 6
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=49.80 E-value=7.6 Score=32.22 Aligned_cols=17 Identities=29% Similarity=0.741 Sum_probs=15.3
Q ss_pred cCCCceeecccchhHHH
Q 030190 128 YGGPGTLLVLPFIDMAD 144 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~~ 144 (181)
|=|||.|.+-|.+|++.
T Consensus 57 yHGPGQLV~YpIl~L~~ 73 (184)
T TIGR00214 57 YHGPGQQVMYVILDLKR 73 (184)
T ss_pred EECCCeEEEEEEEEchh
Confidence 88999999999999764
No 7
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=49.56 E-value=26 Score=30.53 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=16.8
Q ss_pred Cceeeccc-chhHHHHhhhCCCCC
Q 030190 131 PGTLLVLP-FIDMADTLNERGLPG 153 (181)
Q Consensus 131 pGTLlV~P-F~DM~~~l~E~gLPG 153 (181)
-|+=++.| +.+++..++++|+.-
T Consensus 138 ~GEPlL~p~l~eli~~~k~~Gi~~ 161 (322)
T PRK13762 138 SGEPTLYPYLPELIEEFHKRGFTT 161 (322)
T ss_pred CccccchhhHHHHHHHHHHcCCCE
Confidence 36666677 558888999998863
No 8
>PRK14348 lipoate-protein ligase B; Provisional
Probab=47.61 E-value=7.4 Score=33.17 Aligned_cols=17 Identities=35% Similarity=1.021 Sum_probs=15.0
Q ss_pred cCCCceeecccchhHHH
Q 030190 128 YGGPGTLLVLPFIDMAD 144 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~~ 144 (181)
|=|||-|.+-|.+|+..
T Consensus 86 yHGPGQlV~Ypil~L~~ 102 (221)
T PRK14348 86 YHGPGQLVCYPILNLEE 102 (221)
T ss_pred EECCCeEEEEEEEEccc
Confidence 77899999999999754
No 9
>COG0405 Ggt Gamma-glutamyltransferase [Amino acid transport and metabolism]
Probab=46.90 E-value=25 Score=33.77 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=39.5
Q ss_pred HHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHHHHhhhhhhhhc
Q 030190 122 TFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKE 175 (181)
Q Consensus 122 ~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~~vDkDWk~ 175 (181)
+.+|++|| +|...=.++=+..|-++|+|-.|. ..+++...++..-+||+-
T Consensus 124 ~~~~~~yG---~l~~~~ll~PAi~lA~~Gf~v~~~-~~~~~~~~~~~l~~~~~~ 173 (539)
T COG0405 124 EEAHKRYG---TLPWADLLEPAIKLARDGFPVSPR-LAALIASAAERLAKDPET 173 (539)
T ss_pred HHHHHHhC---CCcHHHHHHHHHHHHHcCCccCHH-HHHHHhhhhHHHhhChhh
Confidence 46888997 777666677778899999999988 666777788888888763
No 10
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=46.43 E-value=68 Score=21.00 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=37.7
Q ss_pred hhHHhhhHHH----HHHHhhhhcCCCceeecccchhHHHHhhhCCCC--CchHHHHHHHHHHHhhh
Q 030190 110 EDVVGICTEI----FSTFLHSEYGGPGTLLVLPFIDMADTLNERGLP--GGPQAARAAVKWAQRHV 169 (181)
Q Consensus 110 eeVV~VCteI----Fs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLP--Gap~AARaai~WAq~~v 169 (181)
.++...|-+. |.+... +..++-.|+..|...|+...|- ..-+.-.|++.|++.+.
T Consensus 14 ~~L~~~~~~~i~~nf~~~~~-----~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 14 EELLEKALRFILKNFLEVAQ-----SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 3455555444 444332 2556677999999999887774 34677899999999875
No 11
>PRK14341 lipoate-protein ligase B; Provisional
Probab=46.37 E-value=7.5 Score=32.90 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=14.9
Q ss_pred cCCCceeecccchhHHH
Q 030190 128 YGGPGTLLVLPFIDMAD 144 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~~ 144 (181)
|=|||.|.+-|.+|+..
T Consensus 77 yHGPGQlV~YpIl~L~~ 93 (213)
T PRK14341 77 YHGPGQRVAYVMLDLKR 93 (213)
T ss_pred EECCCeEEEEEEEEccc
Confidence 77899999999999754
No 12
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=46.14 E-value=21 Score=29.44 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhhcccccchhhHHhhhHHHH----HH----Hhhh--hcC-CCceeecccchhHHHHhhhCCCC
Q 030190 88 TQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIF----ST----FLHS--EYG-GPGTLLVLPFIDMADTLNERGLP 152 (181)
Q Consensus 88 TeKFR~hLlkKLSkkD~fGD~leeVV~VCteIF----s~----FLh~--eYg-GpGTLlV~PF~DM~~~l~E~gLP 152 (181)
..+++.+|-.||.++..--+-+++|++.|++.= .. |+.+ ..| ||-. ....|.++|+.
T Consensus 33 R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g~G~~r--------l~qeL~qkGi~ 100 (174)
T COG2137 33 RDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKGKGPAR--------LKQELKQKGID 100 (174)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhcccChHH--------HHHHHHHcCCC
Confidence 356788999999999888888999999998741 12 2221 233 4544 46788899954
No 13
>PRK14347 lipoate-protein ligase B; Provisional
Probab=43.60 E-value=10 Score=32.17 Aligned_cols=16 Identities=31% Similarity=0.957 Sum_probs=14.8
Q ss_pred cCCCceeecccchhHH
Q 030190 128 YGGPGTLLVLPFIDMA 143 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~ 143 (181)
|=|||.|.+-|.+|+.
T Consensus 75 yHGPGQlV~YpIldL~ 90 (209)
T PRK14347 75 FHGPGQRVIYPILNLA 90 (209)
T ss_pred EeCCCcEEEEEEEecc
Confidence 7789999999999985
No 14
>PRK14345 lipoate-protein ligase B; Provisional
Probab=43.31 E-value=8.4 Score=33.05 Aligned_cols=17 Identities=41% Similarity=0.921 Sum_probs=15.0
Q ss_pred cCCCceeecccchhHHH
Q 030190 128 YGGPGTLLVLPFIDMAD 144 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~~ 144 (181)
|=|||.|.+-|.+|+..
T Consensus 83 yHGPGQLV~YpIldL~~ 99 (234)
T PRK14345 83 WHGPGQLVGYPIIKLAE 99 (234)
T ss_pred EeCCCeEEEEEEEecCC
Confidence 77899999999999863
No 15
>PRK14344 lipoate-protein ligase B; Provisional
Probab=41.54 E-value=11 Score=32.43 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.9
Q ss_pred cCCCceeecccchhHHH
Q 030190 128 YGGPGTLLVLPFIDMAD 144 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~~ 144 (181)
|=|||.|.+-|.+|+..
T Consensus 95 yHGPGQLV~YpIl~L~~ 111 (223)
T PRK14344 95 HHMPGQLVTYLVLDLRR 111 (223)
T ss_pred EECCCcEEEEEEEEccc
Confidence 77899999999999764
No 16
>PF07487 SopE_GEF: SopE GEF domain; InterPro: IPR016019 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Salmonella spp. secrete an effector protein called SopE that is responsible for stimulating the reorganisation of the host cell actin cytoskeleton, and ruffling of the cellular membrane []. It acts as a guanyl-nucleotide-exchange factor on Rho-GTPase proteins such as Cdc42 and Rac. As it is imperative for the bacterium to revert the cell back to its "normal" state as quickly as possible, another tyrosine phosphatase effector called SptP reverses the actions brought about by SopE []. Recently, it has been found that SopE and its protein homologue SopE2 can activate different sets of Rho-GTPases in the host cell []. Far from being a redundant set of two similar type III effectors, they both act in unison to specifically activate different Rho-GTPase signalling cascades in the host cell during infection. This entry represents the guanine nucleotide exchange factor domain of SopE. This domain has an alpha-helical structure consisting of two three-helix bundles arranged in a lamdba shape [, ].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0009405 pathogenesis, 0031532 actin cytoskeleton reorganization, 0032862 activation of Rho GTPase activity, 0005576 extracellular region; PDB: 1GZS_B 1R9K_A 1R6E_A 2JOL_A 2JOK_A.
Probab=41.23 E-value=28 Score=29.46 Aligned_cols=73 Identities=26% Similarity=0.483 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhhcccccch----------hhHH-hhhHHHHHHHhhhhcCCCceeecccch-hHHHHhhhCCCCCc----
Q 030190 91 FRTHLLNKLAKKDMFGDSL----------EDVV-GICTEIFSTFLHSEYGGPGTLLVLPFI-DMADTLNERGLPGG---- 154 (181)
Q Consensus 91 FR~hLlkKLSkkD~fGD~l----------eeVV-~VCteIFs~FLh~eYgGpGTLlV~PF~-DM~~~l~E~gLPGa---- 154 (181)
-|++||+||..-|+=|+-. |++. .|-+|-=..|-..-|- +-.-++||+ +...++++.||||.
T Consensus 8 vk~~m~~~ln~~di~~~~~~D~~y~rQ~~EA~LsavYS~~kd~fc~~l~~--~g~ni~pFL~eiGeaak~aGLPge~KNg 85 (165)
T PF07487_consen 8 VKDFMLQKLNSLDIKGNASKDPAYRRQTCEATLSAVYSENKDRFCKLLIS--KGENIQPFLFEIGEAAKNAGLPGENKNG 85 (165)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTSSSHHHHHHHHHHHHHTT-SEEEETT
T ss_pred HHHHHHHHhhhhccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccHHHHHHHHHHHHCCCCccccCC
Confidence 4789999998655555432 2221 1222333345555333 334678997 56778999999974
Q ss_pred --------------hHHHHHHHHHH
Q 030190 155 --------------PQAARAAVKWA 165 (181)
Q Consensus 155 --------------p~AARaai~WA 165 (181)
|.-+|+.++.-
T Consensus 86 VFtp~GaGAnPfV~Pli~~a~~ky~ 110 (165)
T PF07487_consen 86 VFTPSGAGANPFVTPLIARASIKYP 110 (165)
T ss_dssp EEEETT-SS-TTHHHHHHHHHHH-H
T ss_pred eeccCCCCCCcchhHHHHHHHhhcc
Confidence 77788877653
No 17
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=39.08 E-value=26 Score=28.94 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=12.6
Q ss_pred CCCCchHHHHHHHH
Q 030190 150 GLPGGPQAARAAVK 163 (181)
Q Consensus 150 gLPGap~AARaai~ 163 (181)
.|||+|.|+|.++.
T Consensus 131 nLPGSp~a~~~~le 144 (193)
T PRK09417 131 NLPGQPKSIKETLE 144 (193)
T ss_pred ECCCCHHHHHHHHH
Confidence 39999999999886
No 18
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=38.45 E-value=16 Score=31.55 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCceeecccchhHHHHh-hh---CCCCCchHHHHHHHHHHHhhh
Q 030190 130 GPGTLLVLPFIDMADTL-NE---RGLPGGPQAARAAVKWAQRHV 169 (181)
Q Consensus 130 GpGTLlV~PF~DM~~~l-~E---~gLPGap~AARaai~WAq~~v 169 (181)
.|.+++|.|.|=|+.+| +| -|.|..-.|=++|+..=++|+
T Consensus 151 e~~E~PM~PITmmRNALG~eEGGSGVpLDRekY~~SV~yW~~ha 194 (197)
T PF11539_consen 151 EDYELPMQPITMMRNALGIEEGGSGVPLDREKYLESVEYWSKHA 194 (197)
T ss_dssp SSS-----HHHHHHTTS-CCCTS------HHHHHHHHHHHTTEE
T ss_pred CCCCCCCccHHHHHHHhhhhcCCCCCcccHHHHHHHHHHHHhCc
Confidence 68899999999999999 66 456666678888887655553
No 19
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=37.75 E-value=15 Score=24.93 Aligned_cols=21 Identities=43% Similarity=0.920 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhcccccchhhH
Q 030190 90 KFRTHLLNKLAKKDMFGDSLEDV 112 (181)
Q Consensus 90 KFR~hLlkKLSkkD~fGD~leeV 112 (181)
+||..-|+++. +.|||+++++
T Consensus 1 ~f~~~yl~~~t--~efgdDLd~l 21 (47)
T PF14615_consen 1 EFRNFYLQRLT--DEFGDDLDEL 21 (47)
T ss_pred ChHHHHHHHHH--HHHHHHHHHH
Confidence 36666666654 4567776665
No 20
>PRK14343 lipoate-protein ligase B; Provisional
Probab=37.44 E-value=14 Score=32.10 Aligned_cols=16 Identities=31% Similarity=0.839 Sum_probs=14.3
Q ss_pred cCCCceeecccchhHH
Q 030190 128 YGGPGTLLVLPFIDMA 143 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~ 143 (181)
|=|||.|.+-|.+|+.
T Consensus 87 yHGPGQLV~YpIl~L~ 102 (235)
T PRK14343 87 YHGPGQVVAYLLLDLR 102 (235)
T ss_pred EeCCCeEEEEEEEEcc
Confidence 7789999999999974
No 21
>PF13366 PDDEXK_3: PD-(D/E)XK nuclease superfamily
Probab=37.39 E-value=44 Score=26.19 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=29.1
Q ss_pred cchhhHHhhhHHHHHHHhhhhcCCCceeecccch--hHHHHhhhCCCCCchH
Q 030190 107 DSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFI--DMADTLNERGLPGGPQ 156 (181)
Q Consensus 107 D~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~--DM~~~l~E~gLPGap~ 156 (181)
|...+|++.|-+++++. |||=| |-.. -|..+|+++|+|=..|
T Consensus 2 el~~~Iigaa~~Vh~~L------G~G~l--E~vYe~aL~~EL~~~gi~~~~q 45 (118)
T PF13366_consen 2 ELTYEIIGAAFEVHNEL------GPGFL--ESVYEEALEIELEKRGIPVERQ 45 (118)
T ss_pred chHHHHHHHHHHHHHHh------CCCcc--HHHHHHHHHHHHHHCCCCeEEe
Confidence 34568999999987663 57743 3333 4788999999985433
No 22
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=37.15 E-value=51 Score=28.51 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhh-hcccccchhh-------HHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHH
Q 030190 88 TQKFRTHLLNKLAK-KDMFGDSLED-------VVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAAR 159 (181)
Q Consensus 88 TeKFR~hLlkKLSk-kD~fGD~lee-------VV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AAR 159 (181)
.|-||+|++..+++ +-+|.++... .-..+.+|++ |+++ .|.+|.+.+..--+++ -.+.|
T Consensus 226 iei~R~~~fdiitqY~aIF~~e~~~~~~~~~~~~~~~~~l~s-w~~~--------~v~~~l~~L~~~L~~~----~~~~~ 292 (338)
T PF04124_consen 226 IEIYREHLFDIITQYRAIFPDESSTSVSLQDRPKFIPSELFS-WALH--------RVSSFLETLEMYLPRV----DESSR 292 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccccccccChhHHHH-HHHH--------HHHHHHHHHHHHhhcc----ccchH
Confidence 45699999999998 8888844333 2335678888 5555 3556665555444444 33445
Q ss_pred HHH
Q 030190 160 AAV 162 (181)
Q Consensus 160 aai 162 (181)
++|
T Consensus 293 ~sl 295 (338)
T PF04124_consen 293 ESL 295 (338)
T ss_pred HHH
Confidence 444
No 23
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=35.62 E-value=87 Score=20.73 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.0
Q ss_pred cchhhHHhhhHHHHHHHhhhhcCCCceee
Q 030190 107 DSLEDVVGICTEIFSTFLHSEYGGPGTLL 135 (181)
Q Consensus 107 D~leeVV~VCteIFs~FLh~eYgGpGTLl 135 (181)
.+..++...-.+|+.+|+.. |+|..|-
T Consensus 41 ~~~~~~~~~a~~I~~~fi~~--~s~~~l~ 67 (118)
T PF00615_consen 41 ESEEQRKKLAQQIYNKFISP--GSPNELN 67 (118)
T ss_dssp CSHHHHHHHHHHHHHHHTST--TSTTCCS
T ss_pred cchhhHHHHHHHHHHHHhcc--ccccccc
Confidence 45777888889999999988 5666553
No 24
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=35.46 E-value=44 Score=32.99 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=50.1
Q ss_pred ccccccccccccccccccccccCCCCCCchhhHHHHH----HHHHHHHHhh-----h-hcccccchhhHHhhhHHHHHHH
Q 030190 54 QLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQK----FRTHLLNKLA-----K-KDMFGDSLEDVVGICTEIFSTF 123 (181)
Q Consensus 54 ~~~~~~~~~s~~~~vcRa~~y~~pdPiPEFAd~ETeK----FR~hLlkKLS-----k-kD~fGD~leeVV~VCteIFs~F 123 (181)
+-.|-.+...-.+.+-.--.++...|...+-..++.+ -|++|...+- + +++||++ .+.++.|..+|..+
T Consensus 100 ~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~-~~~~~~~~~~f~~w 178 (673)
T COG1874 100 KKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGH-PCYCDYCQAAFRLW 178 (673)
T ss_pred cCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCc-cccccccHHHHHHH
Confidence 3335455543333333334556667777777777766 5555433222 3 5789999 99999999999999
Q ss_pred hhhhcC
Q 030190 124 LHSEYG 129 (181)
Q Consensus 124 Lh~eYg 129 (181)
|.+.||
T Consensus 179 Lk~~yg 184 (673)
T COG1874 179 LKKGYG 184 (673)
T ss_pred HHhCcc
Confidence 999997
No 25
>PRK14342 lipoate-protein ligase B; Provisional
Probab=35.45 E-value=15 Score=31.25 Aligned_cols=16 Identities=38% Similarity=0.930 Sum_probs=14.3
Q ss_pred cCCCceeecccchhHH
Q 030190 128 YGGPGTLLVLPFIDMA 143 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~ 143 (181)
|=|||.|.+-|.+|+.
T Consensus 77 yHGPGQLV~YpIl~L~ 92 (213)
T PRK14342 77 YHGPGQLVMYVLLDLK 92 (213)
T ss_pred EECCCeEEEEEEEEcc
Confidence 7799999999999865
No 26
>PF14300 DUF4375: Domain of unknown function (DUF4375); PDB: 3VJZ_A.
Probab=34.87 E-value=53 Score=24.39 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=36.7
Q ss_pred hhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHHHHhhh
Q 030190 114 GICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHV 169 (181)
Q Consensus 114 ~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~~v 169 (181)
.|..-.|..|+++-|| ...+.. +.+.+|++-|..-.+..-+.|+.|..++.
T Consensus 22 eV~NGGf~Qf~~N~~g--~~~~~~---~~~~~L~~iGa~~~a~ll~~a~~~~~~~~ 72 (123)
T PF14300_consen 22 EVNNGGFVQFFYNSYG--EYIFWN---EALEALRAIGAKETAKLLRKAIALFGNHG 72 (123)
T ss_dssp HHHHHHHHHHHHCT-H--HHHHTS---SHHHHHHTTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHhcCCc--chhhHH---HHHHHHHHcCcHHHHHHHHHHHHHHhhCC
Confidence 3566789999999666 333223 55678888899999999999999988876
No 27
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=34.87 E-value=19 Score=33.94 Aligned_cols=15 Identities=60% Similarity=0.933 Sum_probs=12.7
Q ss_pred hhhhcCCCceeeccc
Q 030190 124 LHSEYGGPGTLLVLP 138 (181)
Q Consensus 124 Lh~eYgGpGTLlV~P 138 (181)
.|++|||+||||+.-
T Consensus 129 ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 129 AHRRYGGIGTLLVTK 143 (407)
T ss_pred HHhhcCCceEEEEEE
Confidence 378999999999863
No 28
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=34.60 E-value=34 Score=31.65 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=27.0
Q ss_pred hcCCCceee-cccchhHHHHhhhCC------CC-CchHHHHHHHHHHH
Q 030190 127 EYGGPGTLL-VLPFIDMADTLNERG------LP-GGPQAARAAVKWAQ 166 (181)
Q Consensus 127 eYgGpGTLl-V~PF~DM~~~l~E~g------LP-Gap~AARaai~WAq 166 (181)
-|||||-|| .+|+.+..+.++..+ -| |-|.--.-|..||+
T Consensus 53 pyGG~GMvm~~epi~~a~~~~~~~~~~vi~lsP~G~~f~Q~~a~ela~ 100 (357)
T PRK01037 53 PFNGEGMLLMAEPVVQAIRSVRREKSKVIYLSPQGQLLTAKKSRELAS 100 (357)
T ss_pred CCCCCCeEechHHHHHHHHHHHhcCCcEEEECCCCCcCCHHHHHHHhC
Confidence 499999876 689999999998632 12 22444455666665
No 29
>PF01724 DUF29: Domain of unknown function DUF29; InterPro: IPR002636 This entry is represented by Ralstonia phage RSS1, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family.; PDB: 3FCN_A.
Probab=34.54 E-value=1.2e+02 Score=23.73 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCc-eeecccchhHHHHhhhCCCC
Q 030190 85 DSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPG-TLLVLPFIDMADTLNERGLP 152 (181)
Q Consensus 85 d~ETeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpG-TLlV~PF~DM~~~l~E~gLP 152 (181)
..|...||.++.+.|.+.--....+.++++-|=+-=..-+..|+|-|. +++..+-.++-..|.+.-+|
T Consensus 71 ~~tI~~~R~~i~~~l~~sPSLk~~l~~~l~~~Y~~A~~~a~~et~l~~~~fP~~CPysleqiLd~~f~P 139 (139)
T PF01724_consen 71 RATIRNQRRQIEDLLEDSPSLKNYLEEILEEAYQDARKLAARETGLPLETFPEECPYSLEQILDEDFLP 139 (139)
T ss_dssp HHHHHHHHHHHHHH----GGGGGG--HHHHHHHHHH-HHHHHHTT---TT--SS-SS-HHHHHSTT---
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcccCCCCHHHHhhHHhcC
Confidence 457789999999999764444455666666665555566677788774 66666666777888777666
No 30
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=34.40 E-value=50 Score=34.18 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=49.3
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhhh--hcccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhh
Q 030190 77 PDPIPEFADSETQKFRTHLLNKLAK--KDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLN 147 (181)
Q Consensus 77 pdPiPEFAd~ETeKFR~hLlkKLSk--kD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~ 147 (181)
..|+.=---.-.|+||+|+++-|+. -|.=||--.-|-----+.++.||+++-.|----++.=|.|-.+.|.
T Consensus 674 ~V~~t~~~S~sie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~kD~~~~~~y~iR~~~dki~~lR 746 (993)
T COG5234 674 IVPFTYEKSESIEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVKDSSGKKLYIIRQTFDKIDSLR 746 (993)
T ss_pred chhhhccccccHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhccccCCchhHHHHhhcccHHHH
Confidence 5555444445679999999999997 5776764333333334788899999988777666776776666654
No 31
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=33.98 E-value=1.1e+02 Score=26.90 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=43.9
Q ss_pred cccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCch-HHHHHHHHHHHhhhh
Q 030190 105 FGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGP-QAARAAVKWAQRHVD 170 (181)
Q Consensus 105 fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap-~AARaai~WAq~~vD 170 (181)
..|..+++.+++..+|++-|+-.+|+.+.+++ +.|..+.|++. +..+ ...-..|.=|+++++
T Consensus 195 ~re~~~~~L~~ll~~~RD~l~~~~~~~~~~l~--~~d~~~~l~~~--~~~~l~~~i~~i~~a~~~l~ 257 (290)
T PRK05917 195 LRDKTKAMLEVLLQLFRDRFLLALKVPASALA--YPDLLKEILTL--PVLPLEKVLSIIERAVQALD 257 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhc--cHHHHHHHHhc--ccccHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999988777 77998888772 3332 233344444554443
No 32
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=32.99 E-value=37 Score=28.13 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=32.6
Q ss_pred ccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCC
Q 030190 104 MFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGL 151 (181)
Q Consensus 104 ~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gL 151 (181)
.+-...++|+.-|.+. |. +.+||-+.+.++++-..|-++|.
T Consensus 57 ~~n~~F~~Vi~~Ca~~-----~~--~~~~TWI~~~~~~aY~~Lh~~G~ 97 (173)
T PF03588_consen 57 TINTAFEEVIRACAEP-----RR--GQDGTWITPEMIEAYTELHELGY 97 (173)
T ss_dssp EESS-HHHHHHHHHTS-----S----STGTTS-HHHHHHHHHHHHTTS
T ss_pred EECCCHHHHHHHHccC-----CC--CCCCCCcCHHHHHHHHHHHHcCe
Confidence 5677889999999876 32 78899999999999999999884
No 33
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=31.94 E-value=1e+02 Score=24.92 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=46.1
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHHhhhh--cccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhh
Q 030190 73 EYKFPDPIPEFADSETQKFRTHLLNKLAKK--DMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNE 148 (181)
Q Consensus 73 ~y~~pdPiPEFAd~ETeKFR~hLlkKLSkk--D~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E 148 (181)
+..|++|..-....++-+.-..+++.+... -..|-|+.-. +.+.|...||-|- +|+.|-+++...|++
T Consensus 30 ~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~-------~A~~La~~~~~~a-vLiNPav~p~~~l~~ 99 (187)
T PF05728_consen 30 DIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGF-------YATYLAERYGLPA-VLINPAVRPYELLQD 99 (187)
T ss_pred CceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHH-------HHHHHHHHhCCCE-EEEcCCCCHHHHHHH
Confidence 345666665566667766666666666543 5677777654 4455777798887 888888877777664
No 34
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=31.55 E-value=43 Score=25.61 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.8
Q ss_pred CCCCCchHHHHHHHHHHHhhh
Q 030190 149 RGLPGGPQAARAAVKWAQRHV 169 (181)
Q Consensus 149 ~gLPGap~AARaai~WAq~~v 169 (181)
-+|||.|.||..++.++.-.+
T Consensus 125 ~~LPG~P~aa~~~~~~v~P~l 145 (152)
T cd00886 125 FNLPGSPKAVREALEVILPEL 145 (152)
T ss_pred EECCCCHHHHHHHHHHHHHHH
Confidence 389999999999888755444
No 35
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=31.35 E-value=74 Score=33.76 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhh----------------------hhcCCCceeecccchhHHHHh
Q 030190 89 QKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLH----------------------SEYGGPGTLLVLPFIDMADTL 146 (181)
Q Consensus 89 eKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh----------------------~eYgGpGTLlV~PF~DM~~~l 146 (181)
--.-.||.-+-+--+.+||+|.++-.+|.+.-=..|. +||-.-|-|+..-|+|+.|++
T Consensus 1416 ~l~~~h~~a~rsa~eeigdsv~elekl~~k~slsllr~tdil~adk~fyeag~aak~~gse~dnl~fi~ln~fldl~dai 1495 (1636)
T KOG3616|consen 1416 ALLAAHLIAMRSAAEEIGDSVKELEKLAAKLSLSLLRHTDILPADKAFYEAGAAAKAVGSEWDNLAFIFLNHFLDLTDAI 1495 (1636)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccccchHHHHHcchhHhhhcchhhhhHHHHHHHHhhHHHHH
Confidence 3333455566566789999999999999765443332 345567889999999999999
Q ss_pred hhCCCCC-------------c-hHHHHHHHHHHHhhhhhhhh
Q 030190 147 NERGLPG-------------G-PQAARAAVKWAQRHVDKDWK 174 (181)
Q Consensus 147 ~E~gLPG-------------a-p~AARaai~WAq~~vDkDWk 174 (181)
+|-.+-| - |+-||.-+.=|..---|||-
T Consensus 1496 eegn~d~ld~s~fedsdip~ev~lpakq~l~~ae~eemkdwv 1537 (1636)
T KOG3616|consen 1496 EEGNGDGLDHSDFEDSDIPFEVPLPAKQHLEEAEHEEMKDWV 1537 (1636)
T ss_pred hccCcCCccCCccccCCCCccccCchhhhchhhhHHHHHHHh
Confidence 9954332 2 66777766667666667774
No 36
>PRK14866 hypothetical protein; Provisional
Probab=30.90 E-value=50 Score=31.24 Aligned_cols=49 Identities=29% Similarity=0.560 Sum_probs=39.8
Q ss_pred cchhhHHhhhHHHHHHHhhhhcCCCceeecccc-hhHHHHhhhCCCCCchH
Q 030190 107 DSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPF-IDMADTLNERGLPGGPQ 156 (181)
Q Consensus 107 D~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF-~DM~~~l~E~gLPGap~ 156 (181)
+..+++|+-|.+|...=-..+|-|=|.|...|= +| .+.+++.|+|.+|.
T Consensus 364 ~~~~~lv~~~~~~l~~~y~~~~~~~~~l~~~~~kfd-~eKa~~lGIp~Gp~ 413 (451)
T PRK14866 364 DIREDLVDLCVKVLKEKYDSVYRGDNELVIRKERFD-PELARKLGVPEGPA 413 (451)
T ss_pred hhHHHHHHHHHHHHHhhceeEEecCceEEecCCCcC-HHHHHHcCCCCchH
Confidence 468999999999999888899998887777665 44 45688899998774
No 37
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=30.52 E-value=80 Score=27.12 Aligned_cols=45 Identities=16% Similarity=0.450 Sum_probs=29.7
Q ss_pred hhhhcCCCceeec---cc------------------chhHHHHhhh---CCCCCchHHH-----HHHHHHHHhh
Q 030190 124 LHSEYGGPGTLLV---LP------------------FIDMADTLNE---RGLPGGPQAA-----RAAVKWAQRH 168 (181)
Q Consensus 124 Lh~eYgGpGTLlV---~P------------------F~DM~~~l~E---~gLPGap~AA-----Raai~WAq~~ 168 (181)
.||-|||||-|-+ .| +.|+...+++ .+-|+.|-.+ ++||.|.+..
T Consensus 183 ~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~ 256 (361)
T TIGR01366 183 PQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGN 256 (361)
T ss_pred chhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 4888999866655 12 4565555554 3557766655 8899988765
No 38
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=30.36 E-value=21 Score=31.12 Aligned_cols=18 Identities=39% Similarity=0.947 Sum_probs=16.0
Q ss_pred hcCCCceeecccchhHHH
Q 030190 127 EYGGPGTLLVLPFIDMAD 144 (181)
Q Consensus 127 eYgGpGTLlV~PF~DM~~ 144 (181)
-|=|||-|.+-|.+|.++
T Consensus 82 TyHGPGQ~V~Y~ildLkr 99 (221)
T COG0321 82 TYHGPGQLVAYPILDLKR 99 (221)
T ss_pred EEeCCCcEEEEEEEeccc
Confidence 388999999999999866
No 39
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=30.34 E-value=2e+02 Score=20.28 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=13.5
Q ss_pred HHHHhhhCCCCCchHHHHHHHHHH
Q 030190 142 MADTLNERGLPGGPQAARAAVKWA 165 (181)
Q Consensus 142 M~~~l~E~gLPGap~AARaai~WA 165 (181)
|..+|+|.++|. ..+...+..+
T Consensus 85 l~~al~~~~~~~--~~~~~~~~~~ 106 (116)
T cd00454 85 LRDALDELGVPA--ELADALLARA 106 (116)
T ss_pred HHHHHHHhCCCH--HHHHHHHHHH
Confidence 677888888775 4444444443
No 40
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.15 E-value=38 Score=25.19 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.6
Q ss_pred CCCCCchHHHHHHHHH
Q 030190 149 RGLPGGPQAARAAVKW 164 (181)
Q Consensus 149 ~gLPGap~AARaai~W 164 (181)
-+|||.|.|++.++.+
T Consensus 112 ~~LPG~p~a~~~~~~~ 127 (133)
T cd00758 112 INLPGSPKSALTTFEA 127 (133)
T ss_pred EECCCCHHHHHHHHHH
Confidence 4899999999988754
No 41
>PRK09213 pur operon repressor; Provisional
Probab=29.30 E-value=28 Score=30.36 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=44.4
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhcc--cccch--------hhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhC
Q 030190 80 IPEFADSETQKFRTHLLNKLAKKDM--FGDSL--------EDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNER 149 (181)
Q Consensus 80 iPEFAd~ETeKFR~hLlkKLSkkD~--fGD~l--------eeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~ 149 (181)
||...+.|.+.|=.+|.++|++.+. .|+=+ -++...+.+++-+.+.. -+ +|...+++-+
T Consensus 72 ~p~~~~~~a~~~~~~L~~~L~~~~rilpGgf~y~sdll~~P~~l~~i~~~la~~~~~----~~-------iD~Vvtvet~ 140 (271)
T PRK09213 72 IPSISEEEAREFVEELCERLSEPDRILPGGYLYLSDLLGNPSILRKIGRIIASAFAD----KK-------IDAVMTVETK 140 (271)
T ss_pred EcCCCHHHHHHHHHHHHHHHHhCCccCCCCeEEeCcccCCHHHHHHHHHHHHHHhcc----cC-------CCEEEEEccc
Confidence 6889999999999999999987542 22111 13444444444333321 11 3555566778
Q ss_pred CCCCchHHHHH
Q 030190 150 GLPGGPQAARA 160 (181)
Q Consensus 150 gLPGap~AARa 160 (181)
|+|.|..+|++
T Consensus 141 GIplA~~vA~~ 151 (271)
T PRK09213 141 GIPLAYAVANY 151 (271)
T ss_pred cHHHHHHHHHH
Confidence 99888877775
No 42
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=29.12 E-value=67 Score=22.75 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=24.4
Q ss_pred HHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHH
Q 030190 119 IFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKW 164 (181)
Q Consensus 119 IFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~W 164 (181)
+|.+++.. .| |++ |.-+..+.+++-|+. +.|+|.||.=
T Consensus 9 l~Gdy~~~-~g--~~i---~~~~Li~ll~~~Gv~--e~avR~alsR 46 (70)
T PF07848_consen 9 LLGDYLRP-RG--GWI---WVASLIRLLAAFGVS--ESAVRTALSR 46 (70)
T ss_dssp HHHHHCCT-TT--S-E---EHHHHHHHHCCTT----HHHHHHHHHH
T ss_pred HHHHHhcc-CC--Cce---eHHHHHHHHHHcCCC--hHHHHHHHHH
Confidence 56777766 55 554 445666667777764 7999999853
No 43
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=27.86 E-value=31 Score=23.57 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=21.7
Q ss_pred hHHHHHHHhhhhcCCCceeecccch----hHHHHhhhC
Q 030190 116 CTEIFSTFLHSEYGGPGTLLVLPFI----DMADTLNER 149 (181)
Q Consensus 116 CteIFs~FLh~eYgGpGTLlV~PF~----DM~~~l~E~ 149 (181)
|-+|+ +||++ || ..|-+.||. |+..+|+.+
T Consensus 7 ~l~V~-eFl~~-F~--~~L~L~~f~~~l~~f~~Al~~~ 40 (63)
T smart00571 7 LLMVY-EFLRS-FG--KVLGLSPFRATLEDFIAALKCR 40 (63)
T ss_pred HHHHH-HHHHH-HH--HHhCCCcchhhHHHHHHHHhcC
Confidence 33444 79999 99 788899988 666666665
No 44
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=27.68 E-value=41 Score=24.73 Aligned_cols=16 Identities=56% Similarity=0.866 Sum_probs=13.5
Q ss_pred CCCCCchHHHHHHHHH
Q 030190 149 RGLPGGPQAARAAVKW 164 (181)
Q Consensus 149 ~gLPGap~AARaai~W 164 (181)
-+|||.|.+|...+.|
T Consensus 119 ~~LPG~P~~~~~~~~~ 134 (135)
T smart00852 119 FGLPGSPVAARAMLEL 134 (135)
T ss_pred EECCCCHHHHHHHHHh
Confidence 5799999999987764
No 45
>PRK14346 lipoate-protein ligase B; Provisional
Probab=27.51 E-value=24 Score=30.56 Aligned_cols=17 Identities=41% Similarity=1.001 Sum_probs=14.9
Q ss_pred cCCCceeecccchhHHH
Q 030190 128 YGGPGTLLVLPFIDMAD 144 (181)
Q Consensus 128 YgGpGTLlV~PF~DM~~ 144 (181)
|=|||-|.+-|.+|+..
T Consensus 74 yHGPGQlV~YpildL~~ 90 (230)
T PRK14346 74 YHGPGQVVAYPLIDLRR 90 (230)
T ss_pred EECCCeEEEEEEEeccc
Confidence 77899999999999753
No 46
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.22 E-value=42 Score=29.05 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceee
Q 030190 86 SETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLL 135 (181)
Q Consensus 86 ~ETeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLl 135 (181)
.+.++++..|.++|.+...+-+.. +++-. .||=||+|
T Consensus 11 ~~s~~~~~~l~~~~~~~~~~~~~~------------D~vi~-iGGDGT~L 47 (259)
T PRK00561 11 PQTEPVLPKLKKVLKKKLAVEDGA------------DYLFV-LGGDGFFV 47 (259)
T ss_pred HHHHHHHHHHHHHHhhCCCccCCC------------CEEEE-ECCcHHHH
Confidence 466778888888887655443332 23333 89999876
No 47
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.20 E-value=45 Score=25.27 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=13.5
Q ss_pred CCCCchHHHHHHHHH
Q 030190 150 GLPGGPQAARAAVKW 164 (181)
Q Consensus 150 gLPGap~AARaai~W 164 (181)
+|||.|.+|+.++.+
T Consensus 126 ~LPG~P~aa~~~~~~ 140 (144)
T TIGR00177 126 GLPGNPVSALVTFEV 140 (144)
T ss_pred ECCCCHHHHHHHHHH
Confidence 899999999998864
No 48
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.09 E-value=67 Score=23.48 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=22.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhh
Q 030190 78 DPIPEFADSETQKFRTHLLNKLAK 101 (181)
Q Consensus 78 dPiPEFAd~ETeKFR~hLlkKLSk 101 (181)
+|||=-+|.|-+.|-.++.+||..
T Consensus 27 VpiPv~~dee~~~L~s~~~~kLe~ 50 (61)
T PF07131_consen 27 VPIPVVTDEEFHTLSSQLSQKLER 50 (61)
T ss_pred eccccccHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999974
No 49
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=25.33 E-value=62 Score=27.35 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhh
Q 030190 88 TQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNE 148 (181)
Q Consensus 88 TeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E 148 (181)
+.+|-.+++++|.+-..++ -++=++|||.|. ++.++...++|
T Consensus 35 ~~~~p~~~~~~l~~~Gl~~---------------~~vP~~~GG~g~----~~~~~~~~~e~ 76 (381)
T PRK12341 35 NGTYPREFMRALADNGISM---------------LGVPEEFGGTPA----DYVTQMLVLEE 76 (381)
T ss_pred hCCCCHHHHHHHHHCCCCC---------------cCCChhhCCCCc----CHHHHHHHHHH
Confidence 3457777777777665544 344457888884 56777777777
No 50
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=24.60 E-value=40 Score=25.06 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=13.7
Q ss_pred CCCCchHHHHHHHHHHH
Q 030190 150 GLPGGPQAARAAVKWAQ 166 (181)
Q Consensus 150 gLPGap~AARaai~WAq 166 (181)
+|||.|.+++.++.+.-
T Consensus 122 ~LPG~P~~~~~~~~~~v 138 (144)
T PF00994_consen 122 GLPGNPVAAKVMLEVLV 138 (144)
T ss_dssp EE-SSHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHH
Confidence 79999999999987753
No 51
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=24.28 E-value=3.5e+02 Score=21.12 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHhhhhccccc-----chhhHHhhh-HHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHH
Q 030190 84 ADSETQKFRTHLLNKLAKKDMFGD-----SLEDVVGIC-TEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQA 157 (181)
Q Consensus 84 Ad~ETeKFR~hLlkKLSkkD~fGD-----~leeVV~VC-teIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~A 157 (181)
+..+..|++..+.+.|..++..+- -+..+|+.| .|+|-+ .|+ +++.++-.+=|+ |.++..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~----~~~--------~W~~~Ll~~L~~--~~~~~~ 84 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLS----HGS--------QWLRALLSILEK--PDPPSV 84 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHH----HHH--------HHHHHHHHHHcC--CCCHHH
Confidence 788999999999999997665543 355677777 666622 122 455555555555 555555
Q ss_pred HHHHHH
Q 030190 158 ARAAVK 163 (181)
Q Consensus 158 ARaai~ 163 (181)
..+|+.
T Consensus 85 ~~~ai~ 90 (165)
T PF08167_consen 85 LEAAII 90 (165)
T ss_pred HHHHHH
Confidence 555553
No 52
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=23.96 E-value=92 Score=25.01 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=30.7
Q ss_pred hhhhcCCCceeecccchh---------HHHHhhhCCCCCch-------------HHHHHHHHHHHhhhhhhhhccc
Q 030190 124 LHSEYGGPGTLLVLPFID---------MADTLNERGLPGGP-------------QAARAAVKWAQRHVDKDWKEWT 177 (181)
Q Consensus 124 Lh~eYgGpGTLlV~PF~D---------M~~~l~E~gLPGap-------------~AARaai~WAq~~vDkDWk~Wt 177 (181)
+|-.+ .-++||.| |--.|.+.|+|+.. ..=..|+..|++ +||..|-
T Consensus 115 ~H~~f-----~~IHPF~DGNGRt~Rll~~l~L~~~g~~p~~~~~~~~~~~~~~r~~Y~~aL~~a~~---~d~~~~~ 182 (186)
T TIGR02613 115 FHHRL-----VAIHPFPNGNGRHARLATDLLLEQQGYSPFTWGSGSLALVGDLRKEYIAALKAADR---HDYGPLL 182 (186)
T ss_pred HHHHH-----heecCcCCCCcHHHHHHHHHHHHHCCCCCccccccchhhHHhhHHHHHHHHHHHhc---cChHHHH
Confidence 45555 57999998 45567889987651 233567777774 4777763
No 53
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=23.31 E-value=1.4e+02 Score=21.79 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.6
Q ss_pred CCCCCc---hHHHHHHHHHHHhhhhhh
Q 030190 149 RGLPGG---PQAARAAVKWAQRHVDKD 172 (181)
Q Consensus 149 ~gLPGa---p~AARaai~WAq~~vDkD 172 (181)
+|||+= +.-+++|-.||++-..++
T Consensus 19 ~Gl~pL~~~~~L~~~A~~hA~~ma~~~ 45 (127)
T TIGR02909 19 NGLKPLKADPELSKVARLKSEDMRDKN 45 (127)
T ss_pred cCCCCCccCHHHHHHHHHHHHHHHhCC
Confidence 788865 889999999999877643
No 54
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.20 E-value=84 Score=30.09 Aligned_cols=75 Identities=31% Similarity=0.327 Sum_probs=59.9
Q ss_pred CCCchhhHHHHHHHHHHHHHhhh-----hcccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCC
Q 030190 79 PIPEFADSETQKFRTHLLNKLAK-----KDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG 153 (181)
Q Consensus 79 PiPEFAd~ETeKFR~hLlkKLSk-----kD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPG 153 (181)
|.|+||..+.- =--.|++.|.+ .-.|-. .|+.-.+|.+.+.+.|.+ ||=.|+=|- ...++.
T Consensus 82 ~a~q~~~s~~g-~d~pll~wl~~~~f~le~~~~~-~e~~~q~~~~vv~~mL~~-----GTTt~~~f~-------~~~~~s 147 (439)
T KOG3968|consen 82 PAHQFAMSGAG-TDMPLLQWLGKYTFPLEATFTN-EEDARQVYQRVVKEMLRA-----GTTTVEYFS-------TLHLDS 147 (439)
T ss_pred hHhhhhhhccc-cCcHHHHHhhcceeecchhhhh-HHHHHHHHHHHHHHHHHc-----Cceehhhhh-------ccCchh
Confidence 47888888876 56678888886 355655 788889999999999999 998888776 677888
Q ss_pred chHHHHHHHHHHHh
Q 030190 154 GPQAARAAVKWAQR 167 (181)
Q Consensus 154 ap~AARaai~WAq~ 167 (181)
.-++||+++.--|+
T Consensus 148 ~~ll~~~~~~~G~R 161 (439)
T KOG3968|consen 148 ELLLARAAIRAGQR 161 (439)
T ss_pred HHHHHHHHHHhCCc
Confidence 88888888876554
No 55
>PF13010 pRN1_helical: Primase helical domain; PDB: 1RO0_A 1RNI_A 1RO2_A 3M1M_A.
Probab=22.89 E-value=54 Score=27.07 Aligned_cols=84 Identities=24% Similarity=0.437 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHhhhhccc-ccchhhHH-hhhHHHHHHH----------h---------hhhcCCCc-----------
Q 030190 85 DSETQKFRTHLLNKLAKKDMF-GDSLEDVV-GICTEIFSTF----------L---------HSEYGGPG----------- 132 (181)
Q Consensus 85 d~ETeKFR~hLlkKLSkkD~f-GD~leeVV-~VCteIFs~F----------L---------h~eYgGpG----------- 132 (181)
+.|-+|+|++|.| .|-| |-.+|+|- .||.+|=-.- | -+.|+--|
T Consensus 10 ~~~~ekLkeEm~K----ydrfkGKtveair~evC~~~kk~~~~~s~k~k~~~nta~~viCe~KtYadigiDRSRGDW~v~ 85 (135)
T PF13010_consen 10 EEDFEKLKEEMAK----YDRFKGKTVEAIREEVCKKIKKSLNEKSKKAKAILNTAKGVICEGKTYADIGIDRSRGDWHVI 85 (135)
T ss_dssp -----HHHHHHHH----H-------HHHHHHHHHTS---HH-------------HHHHHTS---TTTTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hccccCchHHHHHHHHHHhcchhhccchhhhhhhhhhhhhheecCCchhhhccccccCchHHH
Confidence 4456677777654 4777 99999985 5887664433 1 13355444
Q ss_pred -eeecccchhHHHHhhhCCCCCchHHHHHHHHHHHhhhhhhhhcc
Q 030190 133 -TLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEW 176 (181)
Q Consensus 133 -TLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~~vDkDWk~W 176 (181)
+||-+-.+|.-.. .|-||-.+.|-- =+|-.+++--==|.|
T Consensus 86 ~~LlsHGvtd~d~l--~qlLP~DSKvf~--pKWdkYf~hTl~KaW 126 (135)
T PF13010_consen 86 KYLLSHGVTDLDVL--LQLLPEDSKVFA--PKWDKYFVHTLKKAW 126 (135)
T ss_dssp HHHHHTT---HHHH--HHHS-TT-TTTS---HHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHH--HHHCcccccccc--cchhHHHHHHHHHHH
Confidence 4555556654322 245777666532 678777654333333
No 56
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=22.87 E-value=94 Score=27.23 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=27.9
Q ss_pred cccchhHHHHhhhCCCCCchHHHHHHHHHHHhhhhhhhhcccC
Q 030190 136 VLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEWTG 178 (181)
Q Consensus 136 V~PF~DM~~~l~E~gLPGap~AARaai~WAq~~vDkDWk~Wt~ 178 (181)
.+=.-+|...+++.|.++ -.+.++|..|-++|-|. |+.|..
T Consensus 284 ~e~~~~l~~~i~~~~~~~-~~~~~aA~~Wl~~n~d~-v~~Wl~ 324 (331)
T PRK11119 284 LADINAQNLRMHEGESSE-ADIERHVDGWIKAHQAQ-FDGWVK 324 (331)
T ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHCHHH-HHHHHH
Confidence 333345556666666554 24558899999999986 999964
No 57
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=22.03 E-value=71 Score=27.38 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHhhh-hcccccc---------hhhHHhhhHHHHHHHhhhhcCCCcee-ecc------cchhHHHHh
Q 030190 84 ADSETQKFRTHLLNKLAK-KDMFGDS---------LEDVVGICTEIFSTFLHSEYGGPGTL-LVL------PFIDMADTL 146 (181)
Q Consensus 84 Ad~ETeKFR~hLlkKLSk-kD~fGD~---------leeVV~VCteIFs~FLh~eYgGpGTL-lV~------PF~DM~~~l 146 (181)
.+.|...|-.+||.+|++ |...+|. ..-|..++-+||..=+..+=.|.-|. ++. =|+|++..+
T Consensus 38 ~~~e~~~~~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~fa~~~f~~a~~~~~~~~~~~~~~~~f~~a~~~~~~l~~f 117 (380)
T PF04652_consen 38 RSKECRQFLTSLLDKLEKMKAELGDNEAILDDVAAQAYVENFALKLFNRADKEDRAGRATKQTAKTFYAASTFFEVLNIF 117 (380)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCT---CHHC-HHHHHHHHHHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999997 7777742 12234566777877666655544332 222 345666555
No 58
>PRK08297 L-lysine aminotransferase; Provisional
Probab=21.60 E-value=2.7e+02 Score=25.03 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=40.7
Q ss_pred ccccchhhHHh--hhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCC----------chHHHHHHHHHHHhh
Q 030190 104 MFGDSLEDVVG--ICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPG----------GPQAARAAVKWAQRH 168 (181)
Q Consensus 104 ~fGD~leeVV~--VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPG----------ap~AARaai~WAq~~ 168 (181)
.+|-.-.+|++ .=++-..+..+. .+.+....-+|.++.+..|.+.-.|+ |..|.-+||+.|+.|
T Consensus 58 ~lGh~~p~v~~~~ai~~ql~~l~~~-~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~ 133 (443)
T PRK08297 58 ALGMNHPALADDPEFRAELGRAALN-KPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDW 133 (443)
T ss_pred cCCCCChHHhhHHHHHHHHHHhhhh-ccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHH
Confidence 45666666664 334334443322 33334455678888888887754232 699999999999876
No 59
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.26 E-value=67 Score=19.88 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.6
Q ss_pred hHHHHhhhCCCCCchHH-HHHHH
Q 030190 141 DMADTLNERGLPGGPQA-ARAAV 162 (181)
Q Consensus 141 DM~~~l~E~gLPGap~A-ARaai 162 (181)
|+..-|++.|+|..+.+ .|.-|
T Consensus 8 ~L~~wL~~~gi~~~~~~~~rd~L 30 (38)
T PF10281_consen 8 DLKSWLKSHGIPVPKSAKTRDEL 30 (38)
T ss_pred HHHHHHHHcCCCCCCCCCCHHHH
Confidence 67888999999998776 67654
No 60
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.73 E-value=72 Score=21.38 Aligned_cols=17 Identities=35% Similarity=0.759 Sum_probs=14.1
Q ss_pred hHHHHhhhCCCCCchHH
Q 030190 141 DMADTLNERGLPGGPQA 157 (181)
Q Consensus 141 DM~~~l~E~gLPGap~A 157 (181)
+....|++.|+|.+|-.
T Consensus 10 eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 10 ELRAELKQYGLPPGPIT 26 (44)
T ss_pred HHHHHHHHcCCCCCCcC
Confidence 56788999999999854
No 61
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.30 E-value=1.7e+02 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhhhhhh
Q 030190 155 PQAARAAVKWAQRHVDKD 172 (181)
Q Consensus 155 p~AARaai~WAq~~vDkD 172 (181)
-++||.|+.|-+..++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~ 274 (275)
T PRK09856 257 RLYARQALERFRALLPED 274 (275)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 578899999988877765
No 62
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=20.19 E-value=1.5e+02 Score=19.81 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=35.3
Q ss_pred HHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCC--CchHHHHHHHHHHHhhhh
Q 030190 112 VVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLP--GGPQAARAAVKWAQRHVD 170 (181)
Q Consensus 112 VV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLP--Gap~AARaai~WAq~~vD 170 (181)
+.....+-|.+.+.+ ..++=-|+-+|...|....|. ---+.-.|++.|.+.+..
T Consensus 20 ~~~~i~~nf~~v~~~-----~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 20 CLRFIAKNFNEVSKS-----DEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHTHHHHTTS-----HHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHccc-----hhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 333334445555443 356678889999999987774 335788999999998765
No 63
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=20.14 E-value=1.3e+02 Score=27.89 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=37.4
Q ss_pred HhhhHHHHHH-HhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHHHHhhhh
Q 030190 113 VGICTEIFST-FLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVD 170 (181)
Q Consensus 113 V~VCteIFs~-FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~~vD 170 (181)
|+|=.++=.. -+|+.|| +|...=.++-+..|-|+|+|-.|.-|++ |.-.++.+.
T Consensus 98 v~VPG~v~g~~~~~~~~G---~L~w~~ll~PAI~lA~~Gf~v~~~l~~~-~~~~~~~l~ 152 (516)
T TIGR00066 98 IGVPGTVAGLEAALKKYG---TLPLKDLIEPAIKLARNGFPINEALADT-LELYEEVLL 152 (516)
T ss_pred ccccchHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCccCCHHHHHH-HHHHHHHHh
Confidence 4444444332 3677885 9988888888888899999999987775 444444443
No 64
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=20.02 E-value=59 Score=32.12 Aligned_cols=55 Identities=25% Similarity=0.462 Sum_probs=40.9
Q ss_pred cccCCCCCCchh-hHHHHHHHHHHHHHhhhhcccccchhhHHhhh-HHHHHHHhhhhc
Q 030190 73 EYKFPDPIPEFA-DSETQKFRTHLLNKLAKKDMFGDSLEDVVGIC-TEIFSTFLHSEY 128 (181)
Q Consensus 73 ~y~~pdPiPEFA-d~ETeKFR~hLlkKLSkkD~fGD~leeVV~VC-teIFs~FLh~eY 128 (181)
...-+..+|++- +.=+++++.||.++ -.+|.|-.-+.++-+.= .++|.+|+.|.|
T Consensus 111 ~~~~~~~~~~~s~~~~v~~~~~~l~~~-~~~~lf~~~~~~~~~~L~~~pF~~f~~S~y 167 (591)
T KOG0986|consen 111 MKELLACLPQFSSKDLVTHVQEHLLEK-PPKDLFQPLARAICAYLRGDPFQEFLESDY 167 (591)
T ss_pred hccccccCCCcchhhhhHHHhhhcccc-CchhhhHHHHHHHHHHhccchHhHhHHHHH
Confidence 344567788886 67778999999988 66888887777662222 468999998877
Done!