Query 030190
Match_columns 181
No_of_seqs 19 out of 21
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 15:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pd0_A Hypothetical protein; s 55.3 6.6 0.00023 33.2 2.6 40 130-169 177-219 (223)
2 4fbd_A Putative uncharacterize 50.1 8.5 0.00029 32.9 2.5 40 130-169 191-233 (243)
3 3gxq_A Putative regulator of t 48.7 13 0.00045 25.4 2.7 30 133-164 15-48 (54)
4 3jr7_A Uncharacterized EGV fam 43.3 12 0.0004 30.9 2.2 41 84-136 256-296 (298)
5 3fdj_A DEGV family protein; GU 36.2 20 0.00068 29.1 2.5 40 85-136 234-273 (278)
6 1xfi_A Unknown protein; struct 35.6 23 0.00077 30.5 2.9 45 59-107 48-96 (367)
7 3o0f_A Putative metal-dependen 34.6 75 0.0026 26.5 5.8 19 94-114 116-134 (301)
8 1f5n_A Interferon-induced guan 32.7 31 0.0011 31.4 3.4 69 88-158 377-458 (592)
9 3fvv_A Uncharacterized protein 32.4 82 0.0028 22.1 4.9 42 106-154 71-112 (232)
10 4gni_A Putative heat shock pro 31.4 1.2E+02 0.004 24.4 6.3 53 117-176 357-409 (409)
11 3cuq_B Vacuolar protein-sortin 29.7 69 0.0024 25.6 4.6 57 85-151 43-111 (218)
12 3c7l_A Regulator of G-protein 26.0 1.3E+02 0.0044 21.1 5.1 15 115-129 30-44 (137)
13 2ihd_A RGS8, regulator of G-pr 25.6 1.9E+02 0.0065 20.9 6.3 26 104-129 34-61 (155)
14 2is8_A Molybdopterin biosynthe 25.4 32 0.0011 25.4 1.9 23 149-171 126-148 (164)
15 3nyi_A FAT acid-binding protei 25.1 50 0.0017 27.0 3.1 40 85-136 246-287 (297)
16 1pzx_A Hypothetical protein AP 24.9 38 0.0013 27.5 2.4 41 85-137 241-281 (289)
17 1cmz_A Protein (GAIP (G-alpha 24.5 1.8E+02 0.0061 20.6 5.6 22 108-129 23-46 (152)
18 2jm5_A RGS18, regulator of G-p 24.0 2E+02 0.0067 20.5 5.8 26 105-130 11-38 (151)
19 3lup_A DEGV family protein; PS 22.5 46 0.0016 27.0 2.4 40 85-136 240-279 (285)
20 2crp_A RGS5, regulator of G-pr 22.5 1.6E+02 0.0056 20.8 5.1 15 115-129 37-51 (150)
21 2bpt_A Importin beta-1 subunit 22.4 1.4E+02 0.0048 25.2 5.3 58 110-171 796-857 (861)
22 2dlv_A RGS18, regulator of G-p 22.4 1.9E+02 0.0065 20.0 5.3 24 106-129 16-41 (140)
23 3oak_C Transcription elongatio 22.2 32 0.0011 21.3 1.1 12 137-148 1-12 (31)
24 2oj4_A RGS3, regulator of G-pr 22.1 1.9E+02 0.0064 19.5 6.0 24 106-129 8-33 (127)
25 3fys_A Protein DEGV; fatty aci 22.0 46 0.0016 27.8 2.3 40 85-136 271-310 (315)
26 3vjz_A DMP19, putative unchara 21.8 55 0.0019 26.2 2.7 49 115-168 59-107 (166)
27 3vni_A Xylose isomerase domain 20.1 1.1E+02 0.0037 22.8 3.8 14 156-169 275-288 (294)
No 1
>2pd0_A Hypothetical protein; structural genomics, structural genomics consortium, SGC, UN function; HET: MES; 2.30A {Cryptosporidium parvum}
Probab=55.33 E-value=6.6 Score=33.24 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCceeecccchhHHHHhhh---CCCCCchHHHHHHHHHHHhhh
Q 030190 130 GPGTLLVLPFIDMADTLNE---RGLPGGPQAARAAVKWAQRHV 169 (181)
Q Consensus 130 GpGTLlV~PF~DM~~~l~E---~gLPGap~AARaai~WAq~~v 169 (181)
.|.+++|.|.|=|+.+|+| -|.|..-.+=++|+..=++|+
T Consensus 177 e~~E~PM~PITmmRNAL~eEGGSGVpLDRekY~~SV~yW~~ha 219 (223)
T 2pd0_A 177 ESFEVPMEPITILRNTLIEEGGSGVPLKREKYLESVEFWKEHA 219 (223)
T ss_dssp CSSCCCCCHHHHHHTTCGGGCCCCCCCCHHHHHHHHHHHTTEE
T ss_pred CCCCCCCccHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhcC
Confidence 6889999999999999988 567777788888888655553
No 2
>4fbd_A Putative uncharacterized protein; conserved hypothetical, structural genomics, niaid, national institute of allergy and infectious diseases; 2.35A {Toxoplasma gondii}
Probab=50.14 E-value=8.5 Score=32.94 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=33.2
Q ss_pred CCceeecccchhHHHHhhh---CCCCCchHHHHHHHHHHHhhh
Q 030190 130 GPGTLLVLPFIDMADTLNE---RGLPGGPQAARAAVKWAQRHV 169 (181)
Q Consensus 130 GpGTLlV~PF~DM~~~l~E---~gLPGap~AARaai~WAq~~v 169 (181)
.|.+|+|.|.|=|+.+|+| -|.|..-.+=++|+..=++|+
T Consensus 191 e~~E~PM~PITmMRNAL~eEGGSGVpLDRekY~~SV~yW~~ha 233 (243)
T 4fbd_A 191 EKYSLPMAPITMLRNTLIEEGGSGVALDREAYKASVAYWKTHA 233 (243)
T ss_dssp SSSCCCCCHHHHHHTTCGGGSSCCCCCCHHHHHHHHHHHTSEE
T ss_pred CCCCCCCccHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCc
Confidence 6789999999999999988 567777788899988655553
No 3
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=48.66 E-value=13 Score=25.35 Aligned_cols=30 Identities=40% Similarity=0.530 Sum_probs=23.8
Q ss_pred eeecccchhHHHHh----hhCCCCCchHHHHHHHHH
Q 030190 133 TLLVLPFIDMADTL----NERGLPGGPQAARAAVKW 164 (181)
Q Consensus 133 TLlV~PF~DM~~~l----~E~gLPGap~AARaai~W 164 (181)
.|||.| ||.+++ .|+.+-.-+||.|.-++=
T Consensus 15 hllvdp--dmkdeiikyaqekdfdnvsqagreilkk 48 (54)
T 3gxq_A 15 HLLVDP--DMKDEIIKYAQEKDFDNVSQAGREILKK 48 (54)
T ss_dssp EEEECH--HHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred EEeeCC--chhHHHHHHHHHccchhHHHHHHHHHHH
Confidence 478888 898876 468888889999987753
No 4
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=43.27 E-value=12 Score=30.92 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeec
Q 030190 84 ADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLV 136 (181)
Q Consensus 84 Ad~ETeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV 136 (181)
++.+.+++++.|.+++-.++..=-.+.-|+++ |.|||+|.|
T Consensus 256 ~~e~a~~l~~~l~~~~~~~~i~i~~~g~vig~------------H~GpG~i~v 296 (298)
T 3jr7_A 256 CEERAKEVQRLLKERFAVKSSFIVDTSGISTV------------YANDGGIIV 296 (298)
T ss_dssp CHHHHHHHHHHHHHHCCCSEEEEEECCHHHHH------------HHCTTCEEE
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEEEEccEEEE------------EeCCCEEEE
Confidence 34567778877777664333322233333332 789999876
No 5
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=36.21 E-value=20 Score=29.12 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeec
Q 030190 85 DSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLV 136 (181)
Q Consensus 85 d~ETeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV 136 (181)
+.+.+++++.|.+++-.++..=..+--|+ .-|.|||+|.|
T Consensus 234 ~e~a~~l~~~l~~~~~~~~i~i~~~g~vi------------~~h~G~gal~i 273 (278)
T 3fdj_A 234 EALADKIADMIKQAYGTTDVCVYKAGGLC------------SYYAERGGIIL 273 (278)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCHHH------------HHHHCTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEeCcEE------------EEEECCCeEEE
Confidence 45677788777766654333222222222 22889999876
No 6
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=35.60 E-value=23 Score=30.47 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=33.0
Q ss_pred cccccccccccccccccCCCCCCchhhHHHHHHHHHHHHHhhh----hccccc
Q 030190 59 SFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAK----KDMFGD 107 (181)
Q Consensus 59 ~~~~s~~~~vcRa~~y~~pdPiPEFAd~ETeKFR~hLlkKLSk----kD~fGD 107 (181)
-|..+..+++-||... |..+=|..-.++|+..-..+|.+ ..-||.
T Consensus 48 ~~~~~~~~~~~~a~~~----~~~~~a~~ra~~f~~~~~~~l~~l~~~p~~~g~ 96 (367)
T 1xfi_A 48 VFANSIPSFKKRAESD----ITVPDAPARAEKFAERYAGILEDLKKDPESHGG 96 (367)
T ss_dssp HHHTTHHHHHHHHHTC----TTSTTHHHHHHHHHHHHHHHHHHHHHCTTGGGC
T ss_pred HHHHhhHHHHHHhccC----CCCccHHHHHHHHHHHHHHHHHHHhhCccccCC
Confidence 4667788888888877 33446778889999888888874 355665
No 7
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=34.63 E-value=75 Score=26.46 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=11.2
Q ss_pred HHHHHhhhhcccccchhhHHh
Q 030190 94 HLLNKLAKKDMFGDSLEDVVG 114 (181)
Q Consensus 94 hLlkKLSkkD~fGD~leeVV~ 114 (181)
.|.+||.+. +.-..|+|..
T Consensus 116 ~i~~~L~~~--~~i~~e~v~~ 134 (301)
T 3o0f_A 116 RMVERLSQD--FPITWDDVLA 134 (301)
T ss_dssp HHHHHHHHH--SSCCHHHHHT
T ss_pred HHHHHHHHH--CCCCHHHHHH
Confidence 466666665 5555666544
No 8
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.66 E-value=31 Score=31.38 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhh--hcccccchhhHHhhhHHHHHHHhh--------hhcCCCceeecccchhHHHHhhh--CCCC-Cc
Q 030190 88 TQKFRTHLLNKLAK--KDMFGDSLEDVVGICTEIFSTFLH--------SEYGGPGTLLVLPFIDMADTLNE--RGLP-GG 154 (181)
Q Consensus 88 TeKFR~hLlkKLSk--kD~fGD~leeVV~VCteIFs~FLh--------~eYgGpGTLlV~PF~DM~~~l~E--~gLP-Ga 154 (181)
.++|+..|.+.|.+ .++.-..-++-...|.+++.+... ..|.-||. ..=|++.++.+.+ +--| .|
T Consensus 377 ~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g--~~~~~~~~~~~~~~Y~~~~~kg 454 (592)
T 1f5n_A 377 DHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGG--YRLFVQKLQDLKKKYYEEPRKG 454 (592)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTH--HHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCc--HHHHHHHHHHHHHHHHHhcCCc
Confidence 34677777777765 355555567778899888876643 26888886 2336666666665 4457 46
Q ss_pred hHHH
Q 030190 155 PQAA 158 (181)
Q Consensus 155 p~AA 158 (181)
|+|.
T Consensus 455 ~~~~ 458 (592)
T 1f5n_A 455 IQAE 458 (592)
T ss_dssp TTHH
T ss_pred ccHH
Confidence 7764
No 9
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=32.44 E-value=82 Score=22.08 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=27.9
Q ss_pred ccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCc
Q 030190 106 GDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGG 154 (181)
Q Consensus 106 GD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGa 154 (181)
|...+++..++.+.+.+.+.. .+..-..+++..|+++|+|-+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~l~~l~~~g~~~~ 112 (232)
T 3fvv_A 71 AHSPVELAAWHEEFMRDVIRP-------SLTVQAVDVVRGHLAAGDLCA 112 (232)
T ss_dssp TSCHHHHHHHHHHHHHHTTGG-------GCCHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHhhhh-------hcCHHHHHHHHHHHHCCCEEE
Confidence 555666666666666555432 245557788889999998843
No 10
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=31.43 E-value=1.2e+02 Score=24.38 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHHHHhhhhhhhhcc
Q 030190 117 TEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRHVDKDWKEW 176 (181)
Q Consensus 117 teIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~~vDkDWk~W 176 (181)
.....+.|...+|++..+ ..|.. ..+.+-+.-.+|++|...|.+.--.+|.+|
T Consensus 357 ~p~v~~~l~~~f~~~~~v-~~P~~------~~~~~~p~~ava~GAa~~~~~~~~~~~~~~ 409 (409)
T 4gni_A 357 TPRIAANFRYIFPESTRI-LAPST------DPSALNPSELQARGAALQASLIQEHHHHHH 409 (409)
T ss_dssp CHHHHHHHHHHSCTTSEE-ESTTT------CTTCCCTTTHHHHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHcCCcccc-ccccc------cCCCcCHHHHHHHHHHHHhhhhhhhhccCC
Confidence 345677777777765432 23321 012334456789999999999999999887
No 11
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=29.67 E-value=69 Score=25.57 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHH-----------hhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeecccchhHHHHhhh-CCC
Q 030190 85 DSETQKFRTHLLNK-----------LAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNE-RGL 151 (181)
Q Consensus 85 d~ETeKFR~hLlkK-----------LSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E-~gL 151 (181)
+.|+.+|+.-++.. .+..|++=+.-.+|+++|+.- .++.|| +.+..|....++. ||.
T Consensus 43 ~~e~~~f~~m~~slGvd~Pl~~~~~~s~~~f~~ELa~qi~e~c~~~-----~~~~GG-----~I~L~dl~~~~nraRG~ 111 (218)
T 3cuq_B 43 EDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVP-----LEERGG-----IMSLTEVYCLVNRARGM 111 (218)
T ss_dssp -CCSHHHHHHHHHHTCCCHHHHTTSSCSCHHHHHHHHHHHHHHHHH-----HHHTTS-----EEEHHHHHHHHHHTCSS
T ss_pred chHHHHHHHHHHHcCCCCcchhhccCcccHHHHHHHHHHHHHHHHH-----HHhCCC-----eEEHHHHHHHHHHHcCC
Confidence 46788888865221 122466667778999999864 245785 5788888888887 764
No 12
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=26.02 E-value=1.3e+02 Score=21.13 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.2
Q ss_pred hhHHHHHHHhhhhcC
Q 030190 115 ICTEIFSTFLHSEYG 129 (181)
Q Consensus 115 VCteIFs~FLh~eYg 129 (181)
+.-+.|.+||.+||+
T Consensus 30 ~g~~~F~~Fl~~e~s 44 (137)
T 3c7l_A 30 NGVAAFHAFLKTEFS 44 (137)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhCC
Confidence 557899999999998
No 13
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=25.59 E-value=1.9e+02 Score=20.85 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred ccccchhhHHh--hhHHHHHHHhhhhcC
Q 030190 104 MFGDSLEDVVG--ICTEIFSTFLHSEYG 129 (181)
Q Consensus 104 ~fGD~leeVV~--VCteIFs~FLh~eYg 129 (181)
.++.++++|.. +.-+.|.+||.+|++
T Consensus 34 ~w~~sl~~iL~dp~g~~~F~~FL~~e~s 61 (155)
T 2ihd_A 34 RWADSFDVLLSHKYGVAAFRAFLKTEFS 61 (155)
T ss_dssp HTTSCHHHHHTSHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHCCHHHHHHHHHHHHHhCC
Confidence 34556666665 667899999999998
No 14
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=25.37 E-value=32 Score=25.44 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=17.8
Q ss_pred CCCCCchHHHHHHHHHHHhhhhh
Q 030190 149 RGLPGGPQAARAAVKWAQRHVDK 171 (181)
Q Consensus 149 ~gLPGap~AARaai~WAq~~vDk 171 (181)
-+|||.|.+++.++.+..-.+.+
T Consensus 126 ~~LPG~P~~~~~~~~~v~p~l~~ 148 (164)
T 2is8_A 126 LNLPGSPKGARESLEAVLPVLPH 148 (164)
T ss_dssp EEECSSHHHHHHHHHHHGGGHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999998876554443
No 15
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=25.11 E-value=50 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhhhh--cccccchhhHHhhhHHHHHHHhhhhcCCCceeec
Q 030190 85 DSETQKFRTHLLNKLAKK--DMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLV 136 (181)
Q Consensus 85 d~ETeKFR~hLlkKLSkk--D~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV 136 (181)
..+.+++++.|.+++..+ +..=..+--|+++ +.|||++-|
T Consensus 246 ~e~a~~l~~~l~~~~~~~~~~i~i~~ig~vig~------------H~Gpg~igi 287 (297)
T 3nyi_A 246 KEEGFEFMKEVESTLDVKLDSETNVAIGIVSAV------------HTGPYPIGL 287 (297)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGCEECCHHHHH------------HHCSCCEEE
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEEEccEEEE------------EeCCCeEEE
Confidence 456677877776665433 3333333344433 679999865
No 16
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=24.90 E-value=38 Score=27.50 Aligned_cols=41 Identities=15% Similarity=0.381 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeecc
Q 030190 85 DSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLVL 137 (181)
Q Consensus 85 d~ETeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV~ 137 (181)
..+.+++++.|.+++-.++..=..+-.|+++ |.|||++-|-
T Consensus 241 ~e~a~~l~~~l~~~~~~~~i~i~~~g~vig~------------H~Gpg~igi~ 281 (289)
T 1pzx_A 241 EETALELKQMIEETHGCTRFFLSDIGSAIGA------------HAGPGTIALF 281 (289)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECCHHHHH------------HHCTTCEEEE
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccEEEE------------EeCCCeEEEE
Confidence 4466778877776664333322223333332 7799998653
No 17
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=24.52 E-value=1.8e+02 Score=20.59 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=16.3
Q ss_pred chhhHHh--hhHHHHHHHhhhhcC
Q 030190 108 SLEDVVG--ICTEIFSTFLHSEYG 129 (181)
Q Consensus 108 ~leeVV~--VCteIFs~FLh~eYg 129 (181)
++++|.. +.-+.|.+||.+||+
T Consensus 23 sl~~iL~~p~~~~~F~~Fl~~e~s 46 (152)
T 1cmz_A 23 SFDKLMHSPAGRSVFRAFLRTEYS 46 (152)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHTC
T ss_pred hHHHHHCChHHHHHHHHHHHHhcC
Confidence 3444443 567899999999998
No 18
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=23.99 E-value=2e+02 Score=20.48 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=19.1
Q ss_pred cccchhhHHh--hhHHHHHHHhhhhcCC
Q 030190 105 FGDSLEDVVG--ICTEIFSTFLHSEYGG 130 (181)
Q Consensus 105 fGD~leeVV~--VCteIFs~FLh~eYgG 130 (181)
++.++++|.. +.-+.|.+||.+||+.
T Consensus 11 w~~sl~~iL~~p~g~~~F~~FL~~e~s~ 38 (151)
T 2jm5_A 11 WGESFDKLLSHRDGLEAFTRFLKTEFSE 38 (151)
T ss_dssp HTTCHHHHHHSHHHHHHHHHHHHHTTCT
T ss_pred HHHhHHHHHCChHHHHHHHHHHHHhCCH
Confidence 3445555554 5678999999999983
No 19
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=22.54 E-value=46 Score=27.02 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeec
Q 030190 85 DSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLV 136 (181)
Q Consensus 85 d~ETeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV 136 (181)
+.+.+++++.|.+++-..+..=..+--|+++ +.|||++-|
T Consensus 240 ~e~a~~l~~~l~~~~~~~~i~i~~ig~vig~------------H~Gpg~igi 279 (285)
T 3lup_A 240 QDKAEQLYNLLAKAGLKDDLEIVSFGGVIAT------------HLGEGAVAF 279 (285)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEECCHHHHH------------HHCTTCEEE
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEECcEEEE------------EecCCeEEE
Confidence 3456677776666554333222223333332 679999754
No 20
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.45 E-value=1.6e+02 Score=20.81 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.7
Q ss_pred hhHHHHHHHhhhhcC
Q 030190 115 ICTEIFSTFLHSEYG 129 (181)
Q Consensus 115 VCteIFs~FLh~eYg 129 (181)
..-+.|.+||.+||+
T Consensus 37 ~g~~~F~~Fl~~e~s 51 (150)
T 2crp_A 37 YGLASFKSFLKSEFS 51 (150)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 456799999999997
No 21
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=22.39 E-value=1.4e+02 Score=25.17 Aligned_cols=58 Identities=12% Similarity=0.246 Sum_probs=34.4
Q ss_pred hhHHhhhHHHHHHHhhhhcCCCceeecccchh---HHHHhhh-CCCCCchHHHHHHHHHHHhhhhh
Q 030190 110 EDVVGICTEIFSTFLHSEYGGPGTLLVLPFID---MADTLNE-RGLPGGPQAARAAVKWAQRHVDK 171 (181)
Q Consensus 110 eeVV~VCteIFs~FLh~eYgGpGTLlV~PF~D---M~~~l~E-~gLPGap~AARaai~WAq~~vDk 171 (181)
++|...+.+.++.++.. |||+. +.||.+ +..-|+. ++.+-.-+-.+....||+..+.+
T Consensus 796 ~~vr~~a~~~l~~l~~~-~~g~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 796 DATSRAAVGLIGDIAAM-FPDGS---IKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTST---TGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCCch---HHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 34555566777777666 85553 455555 2222333 33233345678899999988754
No 22
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.35 E-value=1.9e+02 Score=20.01 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=17.5
Q ss_pred ccchhhHHh--hhHHHHHHHhhhhcC
Q 030190 106 GDSLEDVVG--ICTEIFSTFLHSEYG 129 (181)
Q Consensus 106 GD~leeVV~--VCteIFs~FLh~eYg 129 (181)
..++++|.. +.-+.|.+||.+||+
T Consensus 16 ~~sl~~iL~~~~~~~~F~~Fl~~e~s 41 (140)
T 2dlv_A 16 GESFDKLLSHRDGLEAFTRFLKTEFS 41 (140)
T ss_dssp TTCHHHHHHSHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHCChHHHHHHHHHHHHhCC
Confidence 334555544 567899999999998
No 23
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=22.23 E-value=32 Score=21.33 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=10.5
Q ss_pred ccchhHHHHhhh
Q 030190 137 LPFIDMADTLNE 148 (181)
Q Consensus 137 ~PF~DM~~~l~E 148 (181)
.||+-|.++|.+
T Consensus 1 ~~~~~~~~aled 12 (31)
T 3oak_C 1 DPFTHMSDKIDE 12 (31)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcchhHHHHHHH
Confidence 499999999987
No 24
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=22.14 E-value=1.9e+02 Score=19.55 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=17.7
Q ss_pred ccchhhHHh--hhHHHHHHHhhhhcC
Q 030190 106 GDSLEDVVG--ICTEIFSTFLHSEYG 129 (181)
Q Consensus 106 GD~leeVV~--VCteIFs~FLh~eYg 129 (181)
+.++++|.. +.-+.|.+||.+|++
T Consensus 8 ~~sl~~iL~~~~g~~~F~~Fl~~e~~ 33 (127)
T 2oj4_A 8 GESLEKLLVHKYGLAVFQAFLRTEFS 33 (127)
T ss_dssp TTCHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHCCHHHHHHHHHHHHHcCC
Confidence 445555554 567899999999997
No 25
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=22.03 E-value=46 Score=27.79 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhhhhcccccchhhHHhhhHHHHHHHhhhhcCCCceeec
Q 030190 85 DSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTEIFSTFLHSEYGGPGTLLV 136 (181)
Q Consensus 85 d~ETeKFR~hLlkKLSkkD~fGD~leeVV~VCteIFs~FLh~eYgGpGTLlV 136 (181)
+.+.+++++.|.+++...+..=..+-.|+++ +.|||++-|
T Consensus 271 ~e~a~~l~~~l~~~~~~~~i~i~~ig~vIg~------------H~GpG~igi 310 (315)
T 3fys_A 271 EEEAAKIIEELSAKYPHVEFYNSYFGAVIGT------------HLGEGALGI 310 (315)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEECCHHHHH------------HHCTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEccEEEE------------EeCCCeEEE
Confidence 4567778777766655443332233334333 679999755
No 26
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=21.80 E-value=55 Score=26.24 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=40.0
Q ss_pred hhHHHHHHHhhhhcCCCceeecccchhHHHHhhhCCCCCchHHHHHHHHHHHhh
Q 030190 115 ICTEIFSTFLHSEYGGPGTLLVLPFIDMADTLNERGLPGGPQAARAAVKWAQRH 168 (181)
Q Consensus 115 VCteIFs~FLh~eYgGpGTLlV~PF~DM~~~l~E~gLPGap~AARaai~WAq~~ 168 (181)
|+.-.|-.++|+-|| +-++-.||. ++|+.=|++--|+--+.|.+|=++|
T Consensus 59 V~~GGFvQLI~NGyG--~~if~Np~a---kalr~wG~~~l~kli~kA~klY~~~ 107 (166)
T 3vjz_A 59 VEEGGFVQLIASGYG--EYIFRNPLA---DSLRRWKIKAVPKVLDKAKALYEQH 107 (166)
T ss_dssp HHHHHHHHHHHHSCH--HHHHTSSHH---HHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCChHhhhhcCch--hHHHhChHH---HHHHHhCchhHHHHHHHHHHHHHHh
Confidence 456679999999999 777778875 4677788888899999999998665
No 27
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=20.06 E-value=1.1e+02 Score=22.83 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhh
Q 030190 156 QAARAAVKWAQRHV 169 (181)
Q Consensus 156 ~AARaai~WAq~~v 169 (181)
..||.+|...|+.+
T Consensus 275 ~~~~~~~~~l~~~~ 288 (294)
T 3vni_A 275 REAQAALDFSRYVL 288 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67778877777654
Done!