Query 030192
Match_columns 181
No_of_seqs 124 out of 1856
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 3.3E-39 7.2E-44 223.7 19.9 181 1-181 1-181 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 4.1E-38 8.8E-43 218.5 19.4 180 1-180 1-180 (182)
3 smart00177 ARF ARF-like small 100.0 2.8E-36 6E-41 208.2 18.9 169 10-178 6-174 (175)
4 cd04149 Arf6 Arf6 subfamily. 100.0 2.6E-36 5.6E-41 207.0 16.8 163 13-175 5-167 (168)
5 PF00025 Arf: ADP-ribosylation 100.0 8.8E-35 1.9E-39 200.5 20.7 173 5-177 1-175 (175)
6 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.8E-35 6.1E-40 200.2 17.2 158 18-175 1-158 (159)
7 KOG0070 GTP-binding ADP-ribosy 100.0 2.4E-35 5.1E-40 196.7 15.7 180 1-180 1-180 (181)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 7.1E-36 1.5E-40 200.1 12.8 163 15-180 20-187 (221)
9 KOG0084 GTPase Rab1/YPT1, smal 100.0 4E-36 8.7E-41 201.8 11.0 161 15-180 7-174 (205)
10 cd04154 Arl2 Arl2 subfamily. 100.0 4.2E-34 9.2E-39 197.0 17.9 165 11-175 8-172 (173)
11 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 6.5E-34 1.4E-38 196.3 18.7 170 6-175 4-173 (174)
12 KOG0092 GTPase Rab5/YPT51 and 100.0 2.1E-34 4.5E-39 192.8 15.2 160 15-180 3-169 (200)
13 cd04158 ARD1 ARD1 subfamily. 100.0 1E-33 2.2E-38 194.4 18.8 161 19-179 1-162 (169)
14 KOG0073 GTP-binding ADP-ribosy 100.0 1.3E-33 2.9E-38 183.9 16.2 176 5-180 4-180 (185)
15 smart00178 SAR Sar1p-like memb 100.0 3.5E-33 7.6E-38 194.2 18.8 174 4-177 3-184 (184)
16 cd04151 Arl1 Arl1 subfamily. 100.0 4.6E-33 1E-37 189.2 16.8 157 19-175 1-157 (158)
17 cd04120 Rab12 Rab12 subfamily. 100.0 2.2E-33 4.7E-38 197.1 14.0 157 18-179 1-164 (202)
18 KOG0078 GTP-binding protein SE 100.0 5.9E-34 1.3E-38 193.8 10.3 164 13-180 8-176 (207)
19 cd00879 Sar1 Sar1 subfamily. 100.0 2.6E-32 5.5E-37 190.8 19.0 173 5-177 6-190 (190)
20 KOG0071 GTP-binding ADP-ribosy 100.0 2E-32 4.3E-37 174.2 16.2 180 1-180 1-180 (180)
21 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.7E-32 3.6E-37 188.0 17.0 157 19-175 1-166 (167)
22 KOG0080 GTPase Rab18, small G 100.0 6.8E-34 1.5E-38 184.9 9.4 162 15-179 9-175 (209)
23 cd04157 Arl6 Arl6 subfamily. 100.0 1.8E-32 3.9E-37 186.7 16.8 157 19-175 1-161 (162)
24 cd04126 Rab20 Rab20 subfamily. 100.0 5E-33 1.1E-37 197.3 14.3 161 18-179 1-191 (220)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.1E-33 4.6E-38 193.3 12.0 160 17-179 2-165 (172)
26 cd01875 RhoG RhoG subfamily. 100.0 2.1E-33 4.6E-38 196.3 12.1 163 16-179 2-178 (191)
27 cd04121 Rab40 Rab40 subfamily. 100.0 2.5E-33 5.4E-38 195.1 12.1 158 15-179 4-168 (189)
28 KOG0098 GTPase Rab2, small G p 100.0 1E-33 2.2E-38 188.3 9.6 161 16-180 5-170 (216)
29 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.4E-32 7.3E-37 189.1 17.7 164 16-179 2-171 (183)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9E-33 2E-37 191.3 14.4 164 15-180 3-182 (182)
31 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3E-32 6.6E-37 186.2 16.3 155 19-175 1-163 (164)
32 cd04133 Rop_like Rop subfamily 100.0 2.8E-32 6.1E-37 187.8 15.1 160 18-179 2-174 (176)
33 cd04131 Rnd Rnd subfamily. Th 100.0 2.5E-32 5.3E-37 188.7 14.7 161 17-179 1-177 (178)
34 cd00878 Arf_Arl Arf (ADP-ribos 100.0 9.6E-32 2.1E-36 182.6 17.4 157 19-175 1-157 (158)
35 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.8E-32 4E-37 189.1 13.6 160 17-177 1-174 (175)
36 cd04156 ARLTS1 ARLTS1 subfamil 100.0 9.4E-32 2E-36 183.0 16.7 157 19-175 1-159 (160)
37 cd04155 Arl3 Arl3 subfamily. 100.0 1.7E-31 3.7E-36 183.9 18.1 164 12-175 9-172 (173)
38 cd04122 Rab14 Rab14 subfamily. 100.0 2.7E-32 5.8E-37 186.8 13.2 157 17-179 2-165 (166)
39 KOG0394 Ras-related GTPase [Ge 100.0 1.1E-32 2.5E-37 183.0 10.5 164 13-179 5-179 (210)
40 PTZ00369 Ras-like protein; Pro 100.0 3.3E-32 7.1E-37 190.1 12.7 160 15-179 3-168 (189)
41 PLN03071 GTP-binding nuclear p 100.0 1.1E-31 2.4E-36 191.1 15.5 159 13-179 9-173 (219)
42 cd04127 Rab27A Rab27a subfamil 100.0 4.1E-32 8.8E-37 188.2 12.7 160 16-180 3-179 (180)
43 cd04136 Rap_like Rap-like subf 100.0 4.6E-32 9.9E-37 184.9 12.6 156 18-177 2-162 (163)
44 cd00877 Ran Ran (Ras-related n 100.0 3.4E-31 7.4E-36 181.3 16.8 155 18-179 1-160 (166)
45 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-31 2.3E-36 191.5 14.7 162 16-179 12-189 (232)
46 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.7E-31 1E-35 185.9 16.9 157 18-179 1-169 (201)
47 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.9E-31 4.1E-36 189.4 14.6 162 17-179 1-177 (222)
48 cd04175 Rap1 Rap1 subgroup. T 100.0 7E-32 1.5E-36 184.4 12.0 156 18-178 2-163 (164)
49 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6.5E-31 1.4E-35 180.0 16.4 157 19-175 1-166 (167)
50 cd04119 RJL RJL (RabJ-Like) su 100.0 3.8E-31 8.2E-36 181.0 15.2 157 18-179 1-168 (168)
51 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.2E-31 9E-36 183.3 15.1 159 18-179 1-167 (182)
52 cd04134 Rho3 Rho3 subfamily. 100.0 1.1E-31 2.4E-36 187.4 12.1 161 18-179 1-175 (189)
53 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4E-31 8.6E-36 179.9 14.4 155 18-177 2-161 (162)
54 cd01871 Rac1_like Rac1-like su 100.0 4.2E-31 9.1E-36 182.1 14.4 158 18-176 2-173 (174)
55 cd01865 Rab3 Rab3 subfamily. 100.0 2.4E-31 5.2E-36 181.9 13.1 157 18-180 2-165 (165)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.4E-31 7.3E-36 182.0 13.7 157 19-179 2-166 (170)
57 cd01867 Rab8_Rab10_Rab13_like 100.0 3.5E-31 7.5E-36 181.5 13.1 159 16-180 2-167 (167)
58 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.6E-31 3.5E-36 181.4 11.0 161 15-179 12-177 (222)
59 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.9E-31 6.2E-36 181.2 12.0 156 17-177 2-163 (164)
60 cd04117 Rab15 Rab15 subfamily. 100.0 7.4E-31 1.6E-35 178.9 14.0 154 18-176 1-160 (161)
61 cd04144 Ras2 Ras2 subfamily. 100.0 2.2E-31 4.8E-36 186.1 11.5 158 19-179 1-164 (190)
62 cd04176 Rap2 Rap2 subgroup. T 100.0 3.8E-31 8.3E-36 180.5 12.3 157 17-177 1-162 (163)
63 cd04159 Arl10_like Arl10-like 100.0 3.6E-30 7.8E-35 174.3 17.0 157 19-175 1-158 (159)
64 cd04111 Rab39 Rab39 subfamily. 100.0 3.9E-31 8.5E-36 187.4 12.7 158 17-179 2-167 (211)
65 smart00173 RAS Ras subfamily o 100.0 4.4E-31 9.6E-36 180.3 12.5 157 18-179 1-163 (164)
66 cd04109 Rab28 Rab28 subfamily. 100.0 6.9E-31 1.5E-35 186.8 13.8 157 18-179 1-167 (215)
67 KOG0093 GTPase Rab3, small G p 100.0 1.9E-31 4.1E-36 171.1 9.5 161 16-180 20-185 (193)
68 KOG0075 GTP-binding ADP-ribosy 100.0 1.4E-30 3.1E-35 166.9 13.2 173 5-178 9-182 (186)
69 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.6E-31 1.2E-35 180.2 12.0 157 17-179 2-165 (166)
70 KOG0086 GTPase Rab4, small G p 100.0 5.8E-31 1.2E-35 170.0 11.1 161 16-180 8-173 (214)
71 cd01864 Rab19 Rab19 subfamily. 100.0 4.3E-30 9.3E-35 175.7 16.0 154 16-177 2-165 (165)
72 cd04132 Rho4_like Rho4-like su 100.0 4.1E-30 8.9E-35 179.2 15.7 156 18-179 1-168 (187)
73 cd04103 Centaurin_gamma Centau 100.0 1.9E-30 4.1E-35 176.1 13.0 154 18-177 1-158 (158)
74 cd04125 RabA_like RabA-like su 100.0 1.6E-30 3.5E-35 181.4 12.5 158 18-180 1-164 (188)
75 cd04140 ARHI_like ARHI subfami 100.0 1.9E-30 4.1E-35 177.5 12.6 156 18-176 2-163 (165)
76 cd04110 Rab35 Rab35 subfamily. 100.0 2.2E-30 4.7E-35 182.2 13.2 157 16-179 5-168 (199)
77 cd01866 Rab2 Rab2 subfamily. 100.0 2.4E-30 5.3E-35 177.5 13.1 157 17-179 4-167 (168)
78 cd04116 Rab9 Rab9 subfamily. 100.0 1E-29 2.2E-34 174.6 16.0 159 15-177 3-170 (170)
79 cd04112 Rab26 Rab26 subfamily. 100.0 2E-30 4.4E-35 181.3 12.1 157 18-180 1-165 (191)
80 cd01868 Rab11_like Rab11-like. 100.0 3.7E-30 8E-35 176.0 12.9 155 17-177 3-164 (165)
81 smart00174 RHO Rho (Ras homolo 100.0 6.1E-30 1.3E-34 176.3 14.1 159 20-179 1-173 (174)
82 smart00176 RAN Ran (Ras-relate 100.0 6.2E-30 1.3E-34 179.3 14.2 150 23-179 1-155 (200)
83 cd04113 Rab4 Rab4 subfamily. 100.0 3.8E-30 8.3E-35 175.2 12.5 154 18-177 1-161 (161)
84 cd04106 Rab23_lke Rab23-like s 100.0 2.9E-30 6.4E-35 175.9 11.8 152 18-176 1-161 (162)
85 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-29 2.4E-34 173.1 14.5 154 18-179 1-159 (161)
86 cd01892 Miro2 Miro2 subfamily. 100.0 3.4E-29 7.3E-34 171.9 16.7 155 15-179 2-167 (169)
87 cd04118 Rab24 Rab24 subfamily. 100.0 6.9E-30 1.5E-34 178.9 13.2 156 18-180 1-168 (193)
88 PF00071 Ras: Ras family; Int 100.0 2.5E-30 5.3E-35 176.3 10.6 154 19-178 1-161 (162)
89 KOG0095 GTPase Rab30, small G 100.0 9.8E-31 2.1E-35 168.4 8.0 158 17-178 7-169 (213)
90 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6E-30 1.3E-34 175.9 12.4 158 17-178 2-169 (170)
91 PLN03118 Rab family protein; P 100.0 6.6E-30 1.4E-34 181.3 12.8 160 15-179 12-178 (211)
92 smart00175 RAB Rab subfamily o 100.0 8.1E-30 1.8E-34 173.9 12.8 157 18-180 1-164 (164)
93 KOG0079 GTP-binding protein H- 100.0 3.7E-31 8E-36 169.9 5.7 156 18-178 9-169 (198)
94 cd01873 RhoBTB RhoBTB subfamil 100.0 5E-30 1.1E-34 179.4 11.9 157 17-176 2-194 (195)
95 PLN03110 Rab GTPase; Provision 100.0 9E-30 2E-34 181.1 13.2 160 15-179 10-175 (216)
96 cd04143 Rhes_like Rhes_like su 100.0 3.7E-29 8.1E-34 180.6 16.1 156 18-177 1-170 (247)
97 cd04177 RSR1 RSR1 subgroup. R 100.0 9.5E-30 2.1E-34 174.5 12.4 156 18-178 2-164 (168)
98 cd01860 Rab5_related Rab5-rela 100.0 2.5E-29 5.4E-34 171.4 14.4 155 17-177 1-162 (163)
99 cd04135 Tc10 TC10 subfamily. 100.0 1.4E-29 3E-34 174.5 13.2 159 18-177 1-173 (174)
100 cd04142 RRP22 RRP22 subfamily. 100.0 2E-29 4.4E-34 176.9 13.9 159 18-179 1-175 (198)
101 cd01863 Rab18 Rab18 subfamily. 100.0 2.3E-29 5E-34 171.3 13.5 155 18-177 1-161 (161)
102 cd01861 Rab6 Rab6 subfamily. 100.0 1.6E-29 3.5E-34 172.0 12.7 154 18-177 1-161 (161)
103 cd01893 Miro1 Miro1 subfamily. 100.0 2.7E-29 5.8E-34 172.0 13.5 160 18-179 1-165 (166)
104 KOG0091 GTPase Rab39, small G 100.0 4.5E-30 9.8E-35 167.5 8.6 161 16-179 7-174 (213)
105 cd01862 Rab7 Rab7 subfamily. 100.0 1E-28 2.2E-33 169.8 15.9 159 18-180 1-169 (172)
106 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.2E-29 4.8E-34 173.5 12.6 157 18-175 1-171 (173)
107 cd04139 RalA_RalB RalA/RalB su 100.0 8.3E-29 1.8E-33 168.9 14.9 157 18-179 1-163 (164)
108 PLN03108 Rab family protein; P 100.0 2E-29 4.4E-34 178.6 12.1 159 15-179 4-169 (210)
109 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.5E-29 7.6E-34 170.9 12.7 154 18-177 1-163 (164)
110 cd01870 RhoA_like RhoA-like su 100.0 1.5E-28 3.1E-33 169.6 14.8 160 17-177 1-174 (175)
111 KOG0072 GTP-binding ADP-ribosy 100.0 4.1E-29 8.9E-34 159.7 10.4 180 1-180 1-181 (182)
112 cd04148 RGK RGK subfamily. Th 100.0 1.1E-28 2.4E-33 175.9 13.2 155 18-178 1-163 (221)
113 cd04146 RERG_RasL11_like RERG/ 100.0 6.9E-29 1.5E-33 169.7 10.9 155 19-178 1-164 (165)
114 cd00157 Rho Rho (Ras homology) 100.0 8.6E-29 1.9E-33 170.0 11.1 157 18-175 1-170 (171)
115 cd04123 Rab21 Rab21 subfamily. 100.0 6E-28 1.3E-32 164.2 15.1 154 18-177 1-161 (162)
116 cd04147 Ras_dva Ras-dva subfam 100.0 8.2E-28 1.8E-32 169.0 14.9 156 19-178 1-163 (198)
117 KOG0081 GTPase Rab27, small G 100.0 2.8E-30 6E-35 167.9 2.2 160 18-180 10-183 (219)
118 cd04137 RheB Rheb (Ras Homolog 100.0 3.8E-28 8.2E-33 168.3 11.4 157 18-179 2-164 (180)
119 cd00154 Rab Rab family. Rab G 100.0 2.5E-27 5.4E-32 160.3 14.5 151 18-174 1-158 (159)
120 cd04114 Rab30 Rab30 subfamily. 100.0 2.1E-27 4.5E-32 162.9 13.8 157 16-177 6-168 (169)
121 cd04129 Rho2 Rho2 subfamily. 100.0 4.5E-27 9.7E-32 163.9 14.5 160 18-178 2-173 (187)
122 cd00876 Ras Ras family. The R 100.0 1.4E-27 3E-32 162.1 11.7 154 19-177 1-160 (160)
123 PTZ00132 GTP-binding nuclear p 100.0 1.4E-26 2.9E-31 164.8 16.3 161 13-180 5-170 (215)
124 KOG0088 GTPase Rab21, small G 99.9 4.3E-28 9.4E-33 157.6 6.4 162 15-180 11-177 (218)
125 cd01897 NOG NOG1 is a nucleola 99.9 2.7E-26 6E-31 157.2 14.3 154 18-178 1-168 (168)
126 KOG0395 Ras-related GTPase [Ge 99.9 5.3E-27 1.2E-31 163.4 10.4 161 16-179 2-166 (196)
127 cd04102 RabL3 RabL3 (Rab-like3 99.9 4.9E-26 1.1E-30 159.6 15.0 146 18-163 1-175 (202)
128 KOG0097 GTPase Rab14, small G 99.9 7.9E-27 1.7E-31 149.2 9.3 158 16-179 10-174 (215)
129 KOG0393 Ras-related small GTPa 99.9 6.7E-27 1.5E-31 160.0 9.4 163 16-179 3-180 (198)
130 KOG0076 GTP-binding ADP-ribosy 99.9 3.1E-27 6.7E-32 155.7 7.4 179 2-180 2-189 (197)
131 cd01898 Obg Obg subfamily. Th 99.9 9E-26 2E-30 154.9 14.4 156 19-177 2-170 (170)
132 KOG0074 GTP-binding ADP-ribosy 99.9 3.8E-26 8.2E-31 145.8 10.7 164 15-178 15-179 (185)
133 cd01890 LepA LepA subfamily. 99.9 2.1E-25 4.5E-30 154.3 14.2 150 19-178 2-177 (179)
134 cd04171 SelB SelB subfamily. 99.9 4.1E-25 8.9E-30 150.6 13.0 152 18-175 1-163 (164)
135 KOG0083 GTPase Rab26/Rab37, sm 99.9 9.9E-27 2.2E-31 147.3 4.0 150 21-179 1-161 (192)
136 cd01878 HflX HflX subfamily. 99.9 6.6E-25 1.4E-29 155.0 13.3 153 15-177 39-204 (204)
137 PRK04213 GTP-binding protein; 99.9 1E-25 2.2E-30 158.8 8.7 160 15-180 7-194 (201)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.8E-24 3.9E-29 148.1 13.9 154 19-178 2-166 (168)
139 PRK12299 obgE GTPase CgtA; Rev 99.9 2.9E-24 6.2E-29 160.9 15.2 158 18-179 159-329 (335)
140 PRK15494 era GTPase Era; Provi 99.9 6.9E-24 1.5E-28 159.7 16.4 157 14-179 49-217 (339)
141 cd00881 GTP_translation_factor 99.9 1.2E-23 2.6E-28 146.5 16.3 155 19-178 1-187 (189)
142 TIGR00231 small_GTP small GTP- 99.9 1E-23 2.3E-28 142.3 15.6 152 17-173 1-159 (161)
143 PRK03003 GTP-binding protein D 99.9 8.9E-24 1.9E-28 165.7 16.6 159 16-179 210-383 (472)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.2E-23 4.7E-28 141.0 15.9 143 18-177 2-156 (157)
145 TIGR00436 era GTP-binding prot 99.9 7.4E-24 1.6E-28 155.4 14.5 151 19-179 2-165 (270)
146 TIGR02528 EutP ethanolamine ut 99.9 1.2E-24 2.7E-29 145.1 9.4 134 19-174 2-141 (142)
147 TIGR03156 GTP_HflX GTP-binding 99.9 1.3E-23 2.9E-28 158.5 14.8 150 16-176 188-350 (351)
148 cd01881 Obg_like The Obg-like 99.9 4.7E-24 1E-28 147.0 11.2 152 22-176 1-175 (176)
149 cd01894 EngA1 EngA1 subfamily. 99.9 1.9E-23 4.2E-28 141.3 13.9 145 21-177 1-157 (157)
150 PF02421 FeoB_N: Ferrous iron 99.9 6.7E-24 1.4E-28 141.8 11.3 141 18-173 1-156 (156)
151 PLN00023 GTP-binding protein; 99.9 1E-23 2.2E-28 155.0 13.2 123 11-133 15-166 (334)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6E-23 1.3E-27 159.0 17.9 149 15-179 201-361 (442)
153 PRK03003 GTP-binding protein D 99.9 2.3E-23 5.1E-28 163.4 15.7 152 16-179 37-200 (472)
154 cd00882 Ras_like_GTPase Ras-li 99.9 5.5E-24 1.2E-28 142.4 10.5 150 22-174 1-156 (157)
155 TIGR02729 Obg_CgtA Obg family 99.9 2.1E-23 4.5E-28 156.2 14.6 156 18-177 158-328 (329)
156 cd01891 TypA_BipA TypA (tyrosi 99.9 2.1E-23 4.6E-28 146.2 13.7 145 18-167 3-171 (194)
157 TIGR03594 GTPase_EngA ribosome 99.9 5E-23 1.1E-27 160.3 17.1 158 16-178 171-344 (429)
158 cd01889 SelB_euk SelB subfamil 99.9 2E-23 4.4E-28 146.1 13.1 156 18-178 1-186 (192)
159 PRK05291 trmE tRNA modificatio 99.9 4.7E-23 1E-27 160.3 16.2 146 15-178 213-370 (449)
160 cd01879 FeoB Ferrous iron tran 99.9 9E-23 1.9E-27 138.2 15.0 146 22-178 1-157 (158)
161 COG1100 GTPase SAR1 and relate 99.9 4.6E-23 9.9E-28 147.0 12.8 163 17-179 5-186 (219)
162 cd01895 EngA2 EngA2 subfamily. 99.9 3.3E-22 7.1E-27 137.2 16.5 155 17-176 2-173 (174)
163 cd04105 SR_beta Signal recogni 99.9 1E-22 2.2E-27 143.5 14.1 157 19-175 2-202 (203)
164 PRK00454 engB GTP-binding prot 99.9 7.1E-23 1.5E-27 143.6 12.4 165 9-179 16-195 (196)
165 PRK12296 obgE GTPase CgtA; Rev 99.9 9.5E-23 2.1E-27 158.3 13.7 158 17-179 159-341 (500)
166 PRK11058 GTPase HflX; Provisio 99.9 4.8E-22 1E-26 153.2 16.6 153 18-179 198-363 (426)
167 PRK12297 obgE GTPase CgtA; Rev 99.9 4.9E-22 1.1E-26 152.5 16.5 153 19-179 160-328 (424)
168 PTZ00099 rab6; Provisional 99.9 5.6E-23 1.2E-27 141.6 9.7 130 44-179 8-143 (176)
169 cd04163 Era Era subfamily. Er 99.9 7.4E-22 1.6E-26 134.5 14.2 154 16-177 2-168 (168)
170 PF00009 GTP_EFTU: Elongation 99.9 2.8E-22 6.1E-27 139.8 12.0 158 16-178 2-187 (188)
171 KOG4252 GTP-binding protein [S 99.9 2.9E-24 6.2E-29 142.6 1.7 155 15-179 18-182 (246)
172 PRK15467 ethanolamine utilizat 99.9 1.9E-22 4.2E-27 136.8 10.2 141 19-178 3-147 (158)
173 TIGR03598 GTPase_YsxC ribosome 99.9 1.7E-22 3.8E-27 139.8 9.9 150 9-167 10-179 (179)
174 PRK00089 era GTPase Era; Revie 99.9 1E-21 2.2E-26 145.8 14.4 156 16-179 4-172 (292)
175 cd01888 eIF2_gamma eIF2-gamma 99.9 4.8E-22 1E-26 140.2 12.0 157 18-179 1-200 (203)
176 PRK00093 GTP-binding protein D 99.9 1.9E-21 4.2E-26 151.6 16.5 159 15-178 171-344 (435)
177 TIGR01393 lepA GTP-binding pro 99.9 6.9E-22 1.5E-26 158.0 14.2 153 17-179 3-181 (595)
178 cd00880 Era_like Era (E. coli 99.9 2E-21 4.4E-26 131.2 14.5 150 22-176 1-162 (163)
179 TIGR03594 GTPase_EngA ribosome 99.9 1E-21 2.2E-26 153.0 14.5 148 19-178 1-160 (429)
180 PF08477 Miro: Miro-like prote 99.9 1.2E-22 2.7E-27 131.5 7.8 109 19-129 1-119 (119)
181 PRK00093 GTP-binding protein D 99.9 1.2E-21 2.6E-26 152.8 14.7 146 18-175 2-159 (435)
182 COG1159 Era GTPase [General fu 99.9 4.9E-22 1.1E-26 142.7 11.3 157 15-179 4-173 (298)
183 PRK09518 bifunctional cytidyla 99.9 2E-21 4.4E-26 158.9 16.1 159 16-179 449-622 (712)
184 TIGR00487 IF-2 translation ini 99.9 3.2E-21 6.9E-26 153.6 16.6 155 15-175 85-247 (587)
185 PRK09518 bifunctional cytidyla 99.9 2.6E-21 5.6E-26 158.3 15.5 153 15-179 273-437 (712)
186 COG1160 Predicted GTPases [Gen 99.9 1.2E-21 2.6E-26 147.9 11.6 148 18-177 4-164 (444)
187 PRK05306 infB translation init 99.9 7.9E-21 1.7E-25 154.9 16.7 156 14-175 287-449 (787)
188 PRK12298 obgE GTPase CgtA; Rev 99.9 5.4E-21 1.2E-25 145.9 14.4 159 19-179 161-334 (390)
189 TIGR00475 selB selenocysteine- 99.9 8E-21 1.7E-25 151.8 13.8 155 18-178 1-166 (581)
190 PRK12317 elongation factor 1-a 99.9 7.3E-21 1.6E-25 147.8 13.1 154 14-169 3-196 (425)
191 CHL00189 infB translation init 99.9 2E-20 4.3E-25 151.4 15.7 156 15-176 242-408 (742)
192 cd01896 DRG The developmentall 99.9 3.4E-20 7.4E-25 133.1 15.2 149 19-177 2-225 (233)
193 COG0486 ThdF Predicted GTPase 99.9 4.9E-20 1.1E-24 139.6 16.5 151 15-179 215-377 (454)
194 PRK05433 GTP-binding protein L 99.9 3.7E-20 8E-25 148.3 16.6 155 15-179 5-185 (600)
195 COG2229 Predicted GTPase [Gene 99.9 4.2E-20 9E-25 123.7 13.6 157 13-176 6-176 (187)
196 COG0218 Predicted GTPase [Gene 99.8 2.3E-20 4.9E-25 127.5 11.6 161 9-179 16-198 (200)
197 KOG1673 Ras GTPases [General f 99.8 5.2E-21 1.1E-25 124.3 7.7 165 13-179 16-187 (205)
198 TIGR00483 EF-1_alpha translati 99.8 1.4E-20 3E-25 146.3 11.3 153 14-168 4-197 (426)
199 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.4E-24 137.4 15.7 158 16-178 177-351 (444)
200 cd04168 TetM_like Tet(M)-like 99.8 1.1E-19 2.4E-24 130.6 15.2 155 19-178 1-235 (237)
201 KOG3883 Ras family small GTPas 99.8 1.2E-19 2.7E-24 117.6 12.5 162 15-179 7-176 (198)
202 PF10662 PduV-EutP: Ethanolami 99.8 2.6E-20 5.5E-25 122.0 9.4 135 19-174 3-142 (143)
203 TIGR00437 feoB ferrous iron tr 99.8 9E-20 1.9E-24 146.0 14.3 139 24-177 1-154 (591)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 5E-20 1.1E-24 130.4 11.3 146 19-168 1-184 (208)
205 TIGR00491 aIF-2 translation in 99.8 1.6E-19 3.4E-24 143.8 15.3 156 16-176 3-214 (590)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 1.1E-19 2.5E-24 145.1 14.2 156 18-178 2-191 (594)
207 PRK10218 GTP-binding protein; 99.8 2.5E-19 5.4E-24 143.1 15.5 159 15-178 3-195 (607)
208 TIGR03680 eif2g_arch translati 99.8 6.3E-20 1.4E-24 141.6 11.6 159 15-178 2-196 (406)
209 PRK09554 feoB ferrous iron tra 99.8 1.8E-19 3.9E-24 147.5 14.9 147 16-177 2-167 (772)
210 cd01883 EF1_alpha Eukaryotic e 99.8 5.8E-20 1.3E-24 131.0 9.7 146 19-167 1-194 (219)
211 KOG0077 Vesicle coat complex C 99.8 2.7E-20 6E-25 122.2 7.1 162 15-176 18-191 (193)
212 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.3E-19 5E-24 125.4 11.8 145 17-166 2-171 (195)
213 PRK04000 translation initiatio 99.8 3.7E-19 8E-24 137.3 12.3 159 14-178 6-201 (411)
214 PRK04004 translation initiatio 99.8 9.3E-19 2E-23 139.9 14.8 153 15-175 4-215 (586)
215 cd04165 GTPBP1_like GTPBP1-lik 99.8 6.1E-19 1.3E-23 125.8 11.7 152 19-175 1-220 (224)
216 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 4.2E-19 9E-24 119.1 9.8 155 17-178 10-169 (216)
217 COG1084 Predicted GTPase [Gene 99.8 1.5E-18 3.1E-23 126.2 13.3 163 8-177 157-335 (346)
218 PRK10512 selenocysteinyl-tRNA- 99.8 5.6E-19 1.2E-23 141.8 12.0 154 18-177 1-165 (614)
219 COG0370 FeoB Fe2+ transport sy 99.8 2.4E-18 5.3E-23 135.6 14.0 150 16-180 2-166 (653)
220 cd01876 YihA_EngB The YihA (En 99.8 1.1E-18 2.4E-23 119.0 10.7 152 19-177 1-170 (170)
221 KOG1489 Predicted GTP-binding 99.8 1.5E-18 3.2E-23 125.4 11.6 152 17-175 196-364 (366)
222 cd01886 EF-G Elongation factor 99.8 6.3E-18 1.4E-22 123.6 13.7 109 19-132 1-130 (270)
223 PRK12736 elongation factor Tu; 99.8 2.5E-18 5.5E-23 132.2 11.9 159 14-177 9-200 (394)
224 KOG0090 Signal recognition par 99.8 8.1E-18 1.8E-22 115.2 13.0 165 12-177 33-238 (238)
225 KOG1707 Predicted Ras related/ 99.8 2.6E-19 5.7E-24 138.0 6.3 160 14-179 6-176 (625)
226 cd04170 EF-G_bact Elongation f 99.8 1.1E-17 2.4E-22 122.8 14.6 109 19-132 1-130 (268)
227 KOG1423 Ras-like GTPase ERA [C 99.8 3.1E-18 6.8E-23 123.2 10.7 159 14-178 69-271 (379)
228 PRK12735 elongation factor Tu; 99.8 4.3E-18 9.3E-23 131.1 12.2 158 15-177 10-202 (396)
229 PRK13351 elongation factor G; 99.8 2.3E-17 5.1E-22 135.0 16.4 115 14-133 5-140 (687)
230 PRK00741 prfC peptide chain re 99.8 4E-17 8.6E-22 129.1 16.3 113 15-132 8-145 (526)
231 cd04169 RF3 RF3 subfamily. Pe 99.8 2.2E-17 4.9E-22 120.6 13.8 122 18-144 3-152 (267)
232 CHL00071 tufA elongation facto 99.8 7.3E-18 1.6E-22 130.3 11.8 147 14-165 9-180 (409)
233 cd04167 Snu114p Snu114p subfam 99.8 1.6E-17 3.6E-22 118.0 12.4 108 19-131 2-136 (213)
234 COG2262 HflX GTPases [General 99.8 4.5E-17 9.7E-22 121.8 14.8 153 15-178 190-356 (411)
235 PF09439 SRPRB: Signal recogni 99.8 1.8E-18 4E-23 118.0 6.8 126 16-142 2-136 (181)
236 cd04104 p47_IIGP_like p47 (47- 99.8 8.2E-18 1.8E-22 118.1 10.0 156 17-179 1-185 (197)
237 TIGR00485 EF-Tu translation el 99.8 2.8E-17 6.1E-22 126.6 13.6 146 14-164 9-179 (394)
238 KOG0462 Elongation factor-type 99.7 7.4E-17 1.6E-21 123.9 13.9 156 13-178 56-235 (650)
239 COG1163 DRG Predicted GTPase [ 99.7 1.5E-16 3.2E-21 115.5 14.7 153 15-177 61-288 (365)
240 PRK05506 bifunctional sulfate 99.7 2.1E-17 4.6E-22 134.0 11.3 160 5-168 12-211 (632)
241 PRK00049 elongation factor Tu; 99.7 3.8E-17 8.3E-22 125.7 12.2 158 15-177 10-202 (396)
242 PLN03126 Elongation factor Tu; 99.7 7.6E-17 1.6E-21 126.1 13.6 147 14-165 78-249 (478)
243 KOG4423 GTP-binding protein-li 99.7 2.6E-19 5.6E-24 119.8 -0.2 160 16-179 24-195 (229)
244 PRK05124 cysN sulfate adenylyl 99.7 2.9E-17 6.3E-22 128.7 10.7 152 13-169 23-216 (474)
245 TIGR02034 CysN sulfate adenyly 99.7 4.4E-17 9.5E-22 125.8 11.4 147 18-168 1-187 (406)
246 TIGR00484 EF-G translation elo 99.7 3.8E-16 8.2E-21 127.8 17.4 114 14-132 7-141 (689)
247 PTZ00141 elongation factor 1- 99.7 7.2E-17 1.6E-21 125.7 12.1 151 14-168 4-203 (446)
248 PLN00043 elongation factor 1-a 99.7 3.8E-17 8.1E-22 127.2 10.4 150 14-168 4-203 (447)
249 COG0481 LepA Membrane GTPase L 99.7 9.5E-17 2.1E-21 121.7 12.1 155 15-179 7-187 (603)
250 TIGR00503 prfC peptide chain r 99.7 4.1E-16 8.9E-21 123.4 16.1 112 15-131 9-145 (527)
251 PF01926 MMR_HSR1: 50S ribosom 99.7 3.1E-16 6.7E-21 101.0 12.6 103 19-127 1-116 (116)
252 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 5.1E-17 1.1E-21 115.6 9.6 159 19-179 1-177 (232)
253 PLN03127 Elongation factor Tu; 99.7 2.2E-16 4.7E-21 122.9 13.0 159 14-177 58-251 (447)
254 COG0532 InfB Translation initi 99.7 3.6E-16 7.9E-21 120.3 12.7 156 15-176 3-168 (509)
255 cd01885 EF2 EF2 (for archaea a 99.7 3.1E-16 6.8E-21 111.5 11.2 108 19-131 2-138 (222)
256 COG0536 Obg Predicted GTPase [ 99.7 4.9E-16 1.1E-20 113.6 11.7 158 19-179 161-334 (369)
257 cd00066 G-alpha G protein alph 99.7 6.6E-16 1.4E-20 115.6 12.8 134 47-180 147-313 (317)
258 smart00275 G_alpha G protein a 99.7 9E-16 2E-20 115.8 13.3 134 47-180 170-336 (342)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.1E-16 1.1E-20 109.0 10.7 160 18-179 1-185 (196)
260 cd01899 Ygr210 Ygr210 subfamil 99.7 2E-15 4.3E-20 112.5 13.1 77 20-96 1-111 (318)
261 PRK12739 elongation factor G; 99.7 1.8E-15 3.9E-20 123.9 13.6 114 14-132 5-139 (691)
262 PTZ00327 eukaryotic translatio 99.7 9E-16 2E-20 119.4 11.2 163 13-178 30-233 (460)
263 KOG1191 Mitochondrial GTPase [ 99.7 2.5E-15 5.4E-20 114.4 13.1 164 15-179 266-451 (531)
264 PRK00007 elongation factor G; 99.6 4.4E-15 9.6E-20 121.6 14.2 114 14-132 7-141 (693)
265 COG5256 TEF1 Translation elong 99.6 6E-16 1.3E-20 115.8 8.1 150 14-168 4-201 (428)
266 PRK12740 elongation factor G; 99.6 7.8E-15 1.7E-19 120.1 15.3 105 23-132 1-126 (668)
267 COG3596 Predicted GTPase [Gene 99.6 2.1E-15 4.6E-20 107.5 9.0 165 11-179 33-223 (296)
268 KOG1145 Mitochondrial translat 99.6 1.5E-14 3.3E-19 111.5 13.4 156 15-176 151-314 (683)
269 COG4917 EutP Ethanolamine util 99.6 8.7E-16 1.9E-20 96.6 5.6 138 19-176 3-144 (148)
270 cd01850 CDC_Septin CDC/Septin. 99.6 1.3E-14 2.8E-19 106.6 11.1 113 16-133 3-158 (276)
271 KOG1490 GTP-binding protein CR 99.6 2.5E-15 5.5E-20 114.6 6.7 173 5-179 154-342 (620)
272 PRK09602 translation-associate 99.6 7.7E-14 1.7E-18 107.0 14.0 78 18-95 2-113 (396)
273 PRK09866 hypothetical protein; 99.6 9.5E-14 2.1E-18 109.9 14.1 112 61-175 230-350 (741)
274 PRK13768 GTPase; Provisional 99.6 1.6E-14 3.4E-19 105.0 8.6 117 61-178 97-247 (253)
275 KOG0082 G-protein alpha subuni 99.6 7.3E-14 1.6E-18 104.0 11.9 134 46-179 180-345 (354)
276 TIGR00490 aEF-2 translation el 99.5 7.6E-14 1.6E-18 114.8 11.7 113 15-132 17-152 (720)
277 PRK09435 membrane ATPase/prote 99.5 4.9E-14 1.1E-18 105.3 8.6 107 59-177 147-259 (332)
278 PF03029 ATP_bind_1: Conserved 99.5 3.6E-14 7.8E-19 102.0 7.3 109 62-177 92-236 (238)
279 PF04548 AIG1: AIG1 family; I 99.5 6.6E-14 1.4E-18 99.3 8.3 160 18-179 1-187 (212)
280 PRK14845 translation initiatio 99.5 2.8E-13 6.1E-18 113.6 12.7 144 28-176 472-671 (1049)
281 cd01882 BMS1 Bms1. Bms1 is an 99.5 2E-13 4.3E-18 97.7 9.8 143 15-166 37-184 (225)
282 TIGR00101 ureG urease accessor 99.5 6.7E-13 1.5E-17 93.1 12.0 104 61-179 92-197 (199)
283 cd01853 Toc34_like Toc34-like 99.5 4.7E-13 1E-17 96.8 11.3 117 15-133 29-164 (249)
284 KOG3905 Dynein light intermedi 99.5 2E-13 4.4E-18 99.5 9.3 163 16-178 51-290 (473)
285 COG1217 TypA Predicted membran 99.5 5.8E-13 1.2E-17 101.2 11.3 159 16-179 4-196 (603)
286 PF03308 ArgK: ArgK protein; 99.5 2.7E-13 5.8E-18 96.7 8.2 150 15-176 27-228 (266)
287 COG2895 CysN GTPases - Sulfate 99.5 3.3E-13 7.1E-18 99.3 8.5 148 15-167 4-192 (431)
288 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.3E-12 7.2E-17 94.1 13.7 116 15-132 36-167 (313)
289 KOG0458 Elongation factor 1 al 99.4 5.2E-13 1.1E-17 103.7 7.9 156 10-167 170-371 (603)
290 KOG1532 GTPase XAB1, interacts 99.4 2.4E-12 5.2E-17 92.0 10.5 117 60-179 115-265 (366)
291 PTZ00416 elongation factor 2; 99.4 1.3E-12 2.7E-17 109.0 10.4 112 15-131 17-157 (836)
292 PF05049 IIGP: Interferon-indu 99.4 1.8E-12 3.8E-17 97.8 10.1 156 15-178 33-218 (376)
293 PLN00116 translation elongatio 99.4 2.1E-12 4.7E-17 107.8 11.4 113 14-131 16-163 (843)
294 COG1703 ArgK Putative periplas 99.4 3.5E-12 7.6E-17 92.3 10.5 150 16-177 50-253 (323)
295 TIGR00073 hypB hydrogenase acc 99.4 3.7E-12 8E-17 90.1 10.4 153 10-177 15-206 (207)
296 PF00503 G-alpha: G-protein al 99.4 2.4E-12 5.1E-17 99.3 9.4 130 48-177 222-389 (389)
297 PRK07560 elongation factor EF- 99.4 5.3E-12 1.1E-16 104.2 10.6 113 15-132 18-153 (731)
298 TIGR00157 ribosome small subun 99.4 6.7E-12 1.5E-16 90.8 9.4 95 72-175 24-120 (245)
299 TIGR00750 lao LAO/AO transport 99.4 2E-11 4.3E-16 91.0 12.2 107 59-177 125-237 (300)
300 PTZ00258 GTP-binding protein; 99.4 2E-11 4.3E-16 93.1 12.3 81 15-95 19-126 (390)
301 COG3276 SelB Selenocysteine-sp 99.3 1.6E-11 3.4E-16 93.0 10.9 153 19-177 2-161 (447)
302 PF05783 DLIC: Dynein light in 99.3 1.7E-11 3.7E-16 95.6 11.3 162 16-179 24-265 (472)
303 smart00010 small_GTPase Small 99.3 2.1E-12 4.6E-17 83.7 4.8 113 18-167 1-115 (124)
304 KOG1707 Predicted Ras related/ 99.3 8.3E-11 1.8E-15 91.7 14.1 154 12-178 420-583 (625)
305 PF00350 Dynamin_N: Dynamin fa 99.3 3.7E-11 7.9E-16 82.2 10.4 63 62-128 102-168 (168)
306 KOG1486 GTP-binding protein DR 99.3 2.8E-10 6.1E-15 80.6 14.4 84 16-99 61-154 (364)
307 TIGR02836 spore_IV_A stage IV 99.3 2.4E-10 5.1E-15 86.8 14.1 113 15-130 15-192 (492)
308 PF00735 Septin: Septin; Inte 99.3 4.5E-11 9.8E-16 88.0 10.0 117 17-138 4-162 (281)
309 COG0480 FusA Translation elong 99.2 1.5E-10 3.2E-15 94.2 12.1 126 14-144 7-157 (697)
310 KOG1144 Translation initiation 99.2 6.5E-11 1.4E-15 94.6 9.6 159 15-178 473-687 (1064)
311 PRK10463 hydrogenase nickel in 99.2 5E-10 1.1E-14 82.1 12.0 151 11-176 98-287 (290)
312 TIGR00993 3a0901s04IAP86 chlor 99.2 3.1E-10 6.6E-15 90.7 11.3 116 16-133 117-251 (763)
313 COG4108 PrfC Peptide chain rel 99.2 1.5E-10 3.3E-15 87.6 8.8 127 15-146 10-164 (528)
314 COG5257 GCD11 Translation init 99.2 7.2E-11 1.6E-15 86.2 6.8 158 15-178 8-202 (415)
315 KOG1487 GTP-binding protein DR 99.2 4.8E-10 1E-14 79.8 9.8 150 18-177 60-280 (358)
316 smart00053 DYNc Dynamin, GTPas 99.1 2.4E-09 5.1E-14 77.0 13.1 69 61-133 125-207 (240)
317 COG0378 HypB Ni2+-binding GTPa 99.1 7.8E-10 1.7E-14 75.6 9.7 148 15-177 10-200 (202)
318 KOG0410 Predicted GTP binding 99.1 2E-10 4.4E-15 84.0 6.3 151 15-180 176-343 (410)
319 KOG3887 Predicted small GTPase 99.1 1.7E-09 3.6E-14 76.3 9.9 159 18-179 28-203 (347)
320 KOG3886 GTP-binding protein [S 99.1 4.7E-10 1E-14 78.4 6.6 116 17-134 4-132 (295)
321 KOG0468 U5 snRNP-specific prot 99.0 6.8E-10 1.5E-14 88.0 7.5 111 15-130 126-261 (971)
322 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.2E-09 2.6E-14 74.0 7.7 56 15-70 100-156 (157)
323 cd01859 MJ1464 MJ1464. This f 99.0 7.7E-10 1.7E-14 74.8 6.2 94 75-178 3-96 (156)
324 cd04178 Nucleostemin_like Nucl 99.0 1.2E-09 2.6E-14 74.9 6.9 54 16-70 116-171 (172)
325 cd01900 YchF YchF subfamily. 99.0 7.9E-10 1.7E-14 80.9 6.3 76 20-95 1-103 (274)
326 PRK09601 GTP-binding protein Y 99.0 1.4E-09 3E-14 82.2 7.5 78 18-95 3-107 (364)
327 KOG0461 Selenocysteine-specifi 99.0 9.5E-09 2.1E-13 76.1 10.9 159 15-179 5-194 (522)
328 cd01855 YqeH YqeH. YqeH is an 99.0 9.9E-10 2.1E-14 76.7 5.6 97 74-177 24-124 (190)
329 COG5019 CDC3 Septin family pro 99.0 1.1E-08 2.4E-13 76.3 11.3 120 14-138 20-182 (373)
330 KOG1954 Endocytosis/signaling 99.0 6.6E-09 1.4E-13 77.5 9.9 123 15-144 56-234 (532)
331 PRK12289 GTPase RsgA; Reviewed 99.0 2E-09 4.3E-14 81.6 7.2 89 79-176 84-173 (352)
332 KOG0085 G protein subunit Galp 99.0 8.6E-10 1.9E-14 77.4 4.3 133 47-179 185-350 (359)
333 KOG2655 Septin family protein 98.9 3.3E-08 7.2E-13 74.2 12.4 121 14-139 18-179 (366)
334 KOG0448 Mitofusin 1 GTPase, in 98.9 1.5E-08 3.3E-13 80.7 11.1 147 11-162 103-310 (749)
335 KOG2486 Predicted GTPase [Gene 98.9 1.4E-09 3.1E-14 78.1 4.5 158 13-175 132-313 (320)
336 COG0050 TufB GTPases - transla 98.9 1.3E-08 2.9E-13 73.8 9.2 140 15-162 10-177 (394)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5.6E-09 1.2E-13 69.5 6.4 52 19-71 85-138 (141)
338 PRK00098 GTPase RsgA; Reviewed 98.9 7.1E-09 1.5E-13 77.3 7.1 86 81-174 77-163 (298)
339 PRK12288 GTPase RsgA; Reviewed 98.9 1.5E-08 3.2E-13 76.9 8.5 89 82-176 118-206 (347)
340 KOG0099 G protein subunit Galp 98.9 1.7E-08 3.7E-13 72.1 8.2 84 48-131 189-282 (379)
341 COG5258 GTPBP1 GTPase [General 98.8 5.7E-08 1.2E-12 73.0 11.0 156 14-174 114-335 (527)
342 KOG0705 GTPase-activating prot 98.8 4.9E-09 1.1E-13 81.6 5.3 155 16-178 29-189 (749)
343 cd01855 YqeH YqeH. YqeH is an 98.8 1.1E-08 2.3E-13 71.5 6.3 54 16-70 126-189 (190)
344 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2E-08 4.3E-13 74.5 8.0 88 79-175 73-161 (287)
345 cd01859 MJ1464 MJ1464. This f 98.8 2.5E-08 5.4E-13 67.4 6.8 55 16-70 100-155 (156)
346 COG1161 Predicted GTPases [Gen 98.8 2.3E-08 5E-13 75.2 6.6 56 15-71 130-187 (322)
347 cd01858 NGP_1 NGP-1. Autoanti 98.8 4.5E-08 9.8E-13 66.3 7.4 90 81-177 5-94 (157)
348 PRK09563 rbgA GTPase YlqF; Rev 98.7 3.3E-08 7.1E-13 73.4 6.9 56 15-71 119-176 (287)
349 cd01849 YlqF_related_GTPase Yl 98.7 4.8E-08 1E-12 66.0 7.1 82 86-176 1-83 (155)
350 cd01856 YlqF YlqF. Proteins o 98.7 3.2E-08 6.9E-13 68.0 6.0 56 15-71 113-170 (171)
351 KOG0467 Translation elongation 98.7 3.9E-08 8.4E-13 79.2 6.9 108 14-129 6-135 (887)
352 TIGR03596 GTPase_YlqF ribosome 98.7 3E-08 6.5E-13 73.2 6.0 55 16-71 117-173 (276)
353 TIGR03597 GTPase_YqeH ribosome 98.7 1.7E-08 3.6E-13 77.2 4.7 98 71-176 50-151 (360)
354 COG0012 Predicted GTPase, prob 98.7 1.1E-07 2.4E-12 71.4 8.4 79 17-95 2-108 (372)
355 cd01851 GBP Guanylate-binding 98.7 5.8E-07 1.3E-11 64.4 11.2 85 15-99 5-106 (224)
356 TIGR00092 GTP-binding protein 98.7 1.6E-07 3.5E-12 71.2 8.6 78 18-95 3-108 (368)
357 cd01849 YlqF_related_GTPase Yl 98.6 7.4E-08 1.6E-12 65.1 5.8 55 15-70 98-154 (155)
358 KOG1143 Predicted translation 98.6 2.5E-07 5.4E-12 69.5 8.7 150 17-171 167-381 (591)
359 COG5192 BMS1 GTP-binding prote 98.6 2.1E-07 4.6E-12 73.2 8.2 139 16-162 68-210 (1077)
360 KOG1491 Predicted GTP-binding 98.6 1.8E-07 3.9E-12 69.2 7.0 80 16-95 19-125 (391)
361 KOG0460 Mitochondrial translat 98.6 1.5E-07 3.3E-12 69.7 6.4 143 15-162 52-219 (449)
362 KOG0465 Mitochondrial elongati 98.6 3.8E-07 8.3E-12 72.1 8.3 111 15-130 37-168 (721)
363 cd01856 YlqF YlqF. Proteins o 98.6 9.3E-08 2E-12 65.7 4.4 90 76-177 11-100 (171)
364 KOG0459 Polypeptide release fa 98.6 1.5E-07 3.3E-12 71.1 5.7 159 12-170 74-278 (501)
365 PRK10416 signal recognition pa 98.5 1.3E-06 2.8E-11 65.7 10.3 137 16-169 113-301 (318)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 2E-07 4.4E-12 61.9 5.0 79 79-165 6-84 (141)
367 TIGR03596 GTPase_YlqF ribosome 98.5 3.8E-07 8.2E-12 67.4 6.9 98 69-178 5-103 (276)
368 PRK14974 cell division protein 98.5 1.1E-06 2.4E-11 66.3 9.4 139 16-171 139-323 (336)
369 TIGR03348 VI_IcmF type VI secr 98.5 4.6E-07 9.9E-12 78.8 8.2 112 19-132 113-257 (1169)
370 PF03193 DUF258: Protein of un 98.5 2E-07 4.4E-12 62.8 4.6 24 18-41 36-59 (161)
371 PRK12289 GTPase RsgA; Reviewed 98.5 3.5E-07 7.7E-12 69.5 6.3 24 19-42 174-197 (352)
372 cd03112 CobW_like The function 98.5 4.4E-07 9.6E-12 61.5 6.2 65 60-130 86-158 (158)
373 KOG0464 Elongation factor G [T 98.5 1.4E-07 2.9E-12 71.8 3.7 127 15-146 35-185 (753)
374 KOG1547 Septin CDC10 and relat 98.5 6.7E-07 1.4E-11 63.4 6.8 112 16-132 45-198 (336)
375 PRK12288 GTPase RsgA; Reviewed 98.4 6.4E-07 1.4E-11 68.1 6.9 54 19-75 207-271 (347)
376 TIGR03597 GTPase_YqeH ribosome 98.4 5.4E-07 1.2E-11 69.0 6.4 55 17-72 154-215 (360)
377 TIGR00064 ftsY signal recognit 98.4 3.3E-06 7.1E-11 62.2 10.1 138 16-170 71-260 (272)
378 TIGR00157 ribosome small subun 98.4 5.1E-07 1.1E-11 65.5 5.4 52 18-73 121-183 (245)
379 PRK13796 GTPase YqeH; Provisio 98.4 1.2E-06 2.7E-11 67.1 7.1 55 16-71 159-220 (365)
380 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.1E-06 2.4E-11 65.3 6.5 99 68-178 7-106 (287)
381 KOG0466 Translation initiation 98.4 3.8E-07 8.2E-12 66.8 3.6 158 14-178 35-241 (466)
382 TIGR01425 SRP54_euk signal rec 98.4 2.7E-06 5.8E-11 66.1 8.3 109 17-132 100-253 (429)
383 KOG3859 Septins (P-loop GTPase 98.3 1.3E-06 2.7E-11 63.3 5.7 117 12-133 37-191 (406)
384 KOG1424 Predicted GTP-binding 98.3 7.8E-07 1.7E-11 69.2 4.2 53 17-70 314-368 (562)
385 KOG0447 Dynamin-like GTP bindi 98.3 1.9E-05 4.1E-10 62.4 11.7 80 62-144 413-507 (980)
386 cd03114 ArgK-like The function 98.3 7.2E-06 1.6E-10 54.9 8.1 58 60-129 91-148 (148)
387 PRK13796 GTPase YqeH; Provisio 98.3 1.5E-06 3.3E-11 66.7 5.3 97 73-177 58-158 (365)
388 PRK01889 GTPase RsgA; Reviewed 98.3 8.6E-06 1.9E-10 62.3 9.1 84 82-174 110-193 (356)
389 COG1618 Predicted nucleotide k 98.2 4.2E-05 9E-10 51.2 10.6 146 15-180 3-178 (179)
390 KOG0463 GTP-binding protein GP 98.2 5.1E-06 1.1E-10 62.7 6.8 151 17-172 133-352 (641)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.2 5.2E-06 1.1E-10 61.7 6.8 57 18-75 162-227 (287)
392 PF02492 cobW: CobW/HypB/UreG, 98.2 4.4E-06 9.5E-11 57.7 5.8 108 20-134 3-157 (178)
393 PRK00098 GTPase RsgA; Reviewed 98.2 5.2E-06 1.1E-10 62.0 6.5 26 17-42 164-189 (298)
394 PF00448 SRP54: SRP54-type pro 98.2 2.6E-06 5.7E-11 59.7 4.6 109 18-133 2-155 (196)
395 PRK14722 flhF flagellar biosyn 98.2 2.1E-05 4.6E-10 60.2 9.2 119 15-133 135-296 (374)
396 COG0523 Putative GTPases (G3E 98.1 3.6E-05 7.8E-10 57.9 9.6 132 20-160 4-184 (323)
397 cd03115 SRP The signal recogni 98.1 2.7E-05 5.9E-10 53.4 8.4 67 60-133 82-154 (173)
398 PF03266 NTPase_1: NTPase; In 98.1 0.00013 2.8E-09 49.9 11.2 132 19-166 1-163 (168)
399 COG1162 Predicted GTPases [Gen 98.1 5.5E-06 1.2E-10 61.0 4.6 54 19-75 166-230 (301)
400 KOG1534 Putative transcription 98.0 3.8E-06 8.2E-11 58.5 3.0 79 61-143 98-189 (273)
401 KOG2484 GTPase [General functi 98.0 3.4E-06 7.3E-11 63.8 2.8 55 15-70 250-306 (435)
402 PF09547 Spore_IV_A: Stage IV 98.0 8.9E-05 1.9E-09 57.1 10.1 140 15-162 15-219 (492)
403 COG1419 FlhF Flagellar GTP-bin 98.0 0.0001 2.2E-09 56.6 9.9 111 16-133 202-353 (407)
404 PRK13695 putative NTPase; Prov 98.0 0.00018 3.9E-09 49.5 10.4 22 18-39 1-22 (174)
405 PRK11889 flhF flagellar biosyn 98.0 2.1E-05 4.5E-10 60.4 6.2 124 16-146 240-406 (436)
406 KOG2423 Nucleolar GTPase [Gene 98.0 3.7E-06 8E-11 63.7 1.7 85 12-99 302-389 (572)
407 COG1162 Predicted GTPases [Gen 98.0 3.6E-05 7.9E-10 56.8 6.8 88 83-176 78-165 (301)
408 cd01983 Fer4_NifH The Fer4_Nif 97.9 9.7E-05 2.1E-09 45.2 7.6 97 20-126 2-99 (99)
409 PRK11537 putative GTP-binding 97.9 3.6E-05 7.9E-10 58.0 6.5 67 61-133 91-165 (318)
410 PRK12727 flagellar biosynthesi 97.9 9.7E-05 2.1E-09 58.8 8.3 112 15-133 348-499 (559)
411 PRK00771 signal recognition pa 97.9 0.00012 2.6E-09 57.4 8.6 110 16-132 94-246 (437)
412 PF06858 NOG1: Nucleolar GTP-b 97.8 2.9E-05 6.3E-10 42.6 3.4 44 84-129 13-58 (58)
413 PRK12726 flagellar biosynthesi 97.8 8.6E-05 1.9E-09 56.9 6.9 124 16-146 205-371 (407)
414 COG3523 IcmF Type VI protein s 97.8 8.8E-05 1.9E-09 64.0 7.7 112 20-132 128-270 (1188)
415 TIGR02475 CobW cobalamin biosy 97.8 9.2E-05 2E-09 56.4 7.2 77 61-143 93-198 (341)
416 PF05621 TniB: Bacterial TniB 97.8 0.00013 2.9E-09 53.9 7.7 112 5-128 49-190 (302)
417 PRK05703 flhF flagellar biosyn 97.7 0.00023 5.1E-09 55.7 8.7 110 17-133 221-372 (424)
418 PRK14721 flhF flagellar biosyn 97.7 4.7E-05 1E-09 59.2 4.6 111 16-133 190-341 (420)
419 PRK10867 signal recognition pa 97.7 0.00027 5.9E-09 55.3 8.7 80 60-146 183-269 (433)
420 TIGR00959 ffh signal recogniti 97.7 0.00012 2.6E-09 57.3 6.4 81 59-146 181-268 (428)
421 PRK06731 flhF flagellar biosyn 97.7 0.0001 2.2E-09 54.2 5.6 124 16-146 74-240 (270)
422 PRK12724 flagellar biosynthesi 97.7 0.00015 3.4E-09 56.2 6.7 123 17-146 223-388 (432)
423 KOG2485 Conserved ATP/GTP bind 97.7 7E-05 1.5E-09 55.2 4.5 57 15-71 141-206 (335)
424 PF13555 AAA_29: P-loop contai 97.7 4.7E-05 1E-09 42.8 2.8 20 19-38 25-44 (62)
425 cd00009 AAA The AAA+ (ATPases 97.7 0.00097 2.1E-08 43.7 9.7 38 4-41 6-43 (151)
426 PRK06995 flhF flagellar biosyn 97.7 0.0002 4.3E-09 56.7 7.0 23 17-39 256-278 (484)
427 PF13207 AAA_17: AAA domain; P 97.6 4.7E-05 1E-09 49.0 3.0 22 19-40 1-22 (121)
428 KOG0780 Signal recognition par 97.6 6.8E-05 1.5E-09 56.9 4.0 97 15-112 99-241 (483)
429 PRK14723 flhF flagellar biosyn 97.6 0.00023 5E-09 59.1 7.3 124 18-146 186-352 (767)
430 KOG0469 Elongation factor 2 [T 97.6 0.00032 7E-09 55.2 7.1 112 15-131 17-163 (842)
431 PRK12723 flagellar biosynthesi 97.6 0.00078 1.7E-08 52.1 9.0 124 16-146 173-341 (388)
432 PF13671 AAA_33: AAA domain; P 97.5 6.6E-05 1.4E-09 49.7 2.8 20 20-39 2-21 (143)
433 PRK07261 topology modulation p 97.5 7.3E-05 1.6E-09 51.3 2.9 22 18-39 1-22 (171)
434 cd02042 ParA ParA and ParB of 97.5 0.00044 9.6E-09 43.2 6.2 80 20-107 2-83 (104)
435 COG0541 Ffh Signal recognition 97.5 0.00033 7.1E-09 54.1 6.3 110 15-131 98-252 (451)
436 PRK08118 topology modulation p 97.5 8.8E-05 1.9E-09 50.7 2.9 23 18-40 2-24 (167)
437 COG0563 Adk Adenylate kinase a 97.5 8.9E-05 1.9E-09 51.2 2.9 23 18-40 1-23 (178)
438 KOG1533 Predicted GTPase [Gene 97.5 0.00019 4.1E-09 51.1 4.1 69 60-132 96-177 (290)
439 COG1126 GlnQ ABC-type polar am 97.4 0.00017 3.6E-09 50.8 3.6 28 15-42 26-53 (240)
440 cd03111 CpaE_like This protein 97.4 0.00094 2E-08 42.0 6.8 101 21-127 3-106 (106)
441 cd02019 NK Nucleoside/nucleoti 97.4 0.00015 3.2E-09 42.0 2.7 21 20-40 2-22 (69)
442 PF00005 ABC_tran: ABC transpo 97.4 0.00016 3.6E-09 47.5 3.0 28 15-42 9-36 (137)
443 cd04178 Nucleostemin_like Nucl 97.4 0.00019 4.2E-09 49.3 3.4 53 86-143 1-55 (172)
444 cd02038 FleN-like FleN is a me 97.4 0.00085 1.8E-08 44.4 6.4 104 22-130 5-109 (139)
445 cd03116 MobB Molybdenum is an 97.4 0.00013 2.9E-09 49.4 2.6 50 19-74 3-52 (159)
446 COG1136 SalX ABC-type antimicr 97.3 0.00017 3.8E-09 51.3 2.8 27 15-41 29-55 (226)
447 PRK10751 molybdopterin-guanine 97.3 0.00024 5.2E-09 48.7 3.3 25 16-40 5-29 (173)
448 PF13521 AAA_28: AAA domain; P 97.3 0.00014 3E-09 49.4 2.1 22 19-40 1-22 (163)
449 TIGR00554 panK_bact pantothena 97.3 0.00029 6.3E-09 52.3 3.9 31 8-38 53-83 (290)
450 TIGR00235 udk uridine kinase. 97.3 0.00021 4.6E-09 50.6 3.0 26 14-39 3-28 (207)
451 COG1116 TauB ABC-type nitrate/ 97.3 0.0002 4.3E-09 51.4 2.8 26 16-41 28-53 (248)
452 PRK01889 GTPase RsgA; Reviewed 97.3 0.00037 8.1E-09 53.5 4.4 25 17-41 195-219 (356)
453 cd00071 GMPK Guanosine monopho 97.3 0.00022 4.8E-09 47.1 2.8 21 20-40 2-22 (137)
454 PF13191 AAA_16: AAA ATPase do 97.3 0.00022 4.7E-09 49.2 2.7 27 13-39 20-46 (185)
455 PRK05480 uridine/cytidine kina 97.3 0.00027 5.9E-09 50.1 3.1 26 15-40 4-29 (209)
456 smart00382 AAA ATPases associa 97.3 0.00032 6.9E-09 45.6 3.3 27 17-43 2-28 (148)
457 PF03205 MobB: Molybdopterin g 97.2 0.00026 5.6E-09 47.0 2.7 22 19-40 2-23 (140)
458 PF13238 AAA_18: AAA domain; P 97.2 0.00027 5.9E-09 45.7 2.8 21 20-40 1-21 (129)
459 COG0552 FtsY Signal recognitio 97.2 0.00053 1.1E-08 51.3 4.4 125 15-146 137-313 (340)
460 PF00004 AAA: ATPase family as 97.2 0.0003 6.4E-09 45.7 2.8 21 20-40 1-21 (132)
461 cd01130 VirB11-like_ATPase Typ 97.2 0.00065 1.4E-08 47.3 4.6 27 15-41 23-49 (186)
462 PRK10078 ribose 1,5-bisphospho 97.2 0.00031 6.8E-09 48.8 3.0 23 18-40 3-25 (186)
463 PRK13851 type IV secretion sys 97.2 0.00049 1.1E-08 52.4 4.2 27 15-41 160-186 (344)
464 PRK03839 putative kinase; Prov 97.2 0.00032 6.8E-09 48.5 2.9 22 19-40 2-23 (180)
465 PRK06217 hypothetical protein; 97.2 0.00031 6.7E-09 48.8 2.9 23 18-40 2-24 (183)
466 PRK14530 adenylate kinase; Pro 97.2 0.00035 7.5E-09 49.8 3.2 23 17-39 3-25 (215)
467 cd02023 UMPK Uridine monophosp 97.2 0.00028 6.1E-09 49.5 2.7 21 20-40 2-22 (198)
468 PRK08233 hypothetical protein; 97.2 0.00038 8.2E-09 48.0 3.2 24 17-40 3-26 (182)
469 PF04665 Pox_A32: Poxvirus A32 97.2 0.00038 8.2E-09 50.2 3.2 27 15-41 11-37 (241)
470 TIGR02322 phosphon_PhnN phosph 97.2 0.00031 6.8E-09 48.4 2.7 22 19-40 3-24 (179)
471 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00039 8.4E-09 43.7 2.6 23 16-38 14-36 (107)
472 cd01131 PilT Pilus retraction 97.1 0.00035 7.5E-09 49.2 2.7 22 20-41 4-25 (198)
473 KOG3347 Predicted nucleotide k 97.1 0.00035 7.5E-09 46.3 2.4 25 15-39 5-29 (176)
474 PF03215 Rad17: Rad17 cell cyc 97.1 0.0083 1.8E-07 48.3 10.6 22 19-40 47-68 (519)
475 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00043 9.3E-09 48.0 3.1 22 17-38 3-24 (188)
476 PRK05439 pantothenate kinase; 97.1 0.00053 1.1E-08 51.4 3.6 32 8-39 77-108 (311)
477 PRK06547 hypothetical protein; 97.1 0.0008 1.7E-08 46.2 4.3 31 10-40 8-38 (172)
478 PRK14738 gmk guanylate kinase; 97.1 0.00046 9.9E-09 48.9 3.2 26 15-40 11-36 (206)
479 PF07728 AAA_5: AAA domain (dy 97.1 0.00046 1E-08 45.5 2.9 21 19-39 1-21 (139)
480 TIGR03263 guanyl_kin guanylate 97.1 0.00042 9.2E-09 47.8 2.8 22 19-40 3-24 (180)
481 PRK14532 adenylate kinase; Pro 97.1 0.00046 1E-08 48.0 2.9 22 18-39 1-22 (188)
482 cd02025 PanK Pantothenate kina 97.1 0.00038 8.3E-09 49.8 2.5 20 20-39 2-21 (220)
483 PRK14531 adenylate kinase; Pro 97.1 0.00049 1.1E-08 47.7 3.0 22 18-39 3-24 (183)
484 COG1117 PstB ABC-type phosphat 97.1 0.00037 8.1E-09 49.0 2.3 21 18-38 34-54 (253)
485 PRK09270 nucleoside triphospha 97.1 0.00088 1.9E-08 48.2 4.3 26 15-40 31-56 (229)
486 PHA00729 NTP-binding motif con 97.1 0.00099 2.1E-08 47.6 4.4 34 7-40 7-40 (226)
487 COG3638 ABC-type phosphate/pho 97.1 0.00047 1E-08 49.2 2.7 24 16-39 29-52 (258)
488 PRK13900 type IV secretion sys 97.1 0.00047 1E-08 52.4 2.8 27 15-41 158-184 (332)
489 PRK00625 shikimate kinase; Pro 97.0 0.00059 1.3E-08 46.9 3.0 22 18-39 1-22 (173)
490 PRK00300 gmk guanylate kinase; 97.0 0.00066 1.4E-08 47.9 3.3 25 16-40 4-28 (205)
491 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00056 1.2E-08 47.2 2.8 28 15-42 23-50 (177)
492 PRK13833 conjugal transfer pro 97.0 0.00055 1.2E-08 51.6 2.9 25 16-40 143-167 (323)
493 COG1120 FepC ABC-type cobalami 97.0 0.00054 1.2E-08 49.8 2.7 25 15-39 26-50 (258)
494 KOG2743 Cobalamin synthesis pr 97.0 0.0069 1.5E-07 44.9 8.3 118 16-142 56-235 (391)
495 PRK13949 shikimate kinase; Pro 97.0 0.0006 1.3E-08 46.7 2.8 21 19-39 3-23 (169)
496 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00062 1.3E-08 48.5 3.0 27 15-41 28-54 (218)
497 PRK14737 gmk guanylate kinase; 97.0 0.00061 1.3E-08 47.5 2.8 25 17-41 4-28 (186)
498 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00057 1.2E-08 47.3 2.7 20 20-39 2-21 (183)
499 COG3839 MalK ABC-type sugar tr 97.0 0.00057 1.2E-08 51.7 2.8 26 16-41 28-53 (338)
500 PF01637 Arch_ATPase: Archaeal 97.0 0.001 2.2E-08 47.4 4.0 36 6-41 9-44 (234)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3.3e-39 Score=223.71 Aligned_cols=181 Identities=99% Similarity=1.466 Sum_probs=161.8
Q ss_pred CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
||..++.+.++...++.++|+++|++|||||||++++..+.+..+.||.+.++..++..++.+++||+||+++++..|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78778888777777788999999999999999999999887777788999888888888999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++++|++|+|||+++++++.....++...+.+....++|+++++||+|+.+....+++.+.+++.......+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999888888877655567999999999999887777888888887766666778889999
Q ss_pred cCCCChHHHHHHHHHHhhhcC
Q 030192 161 TSGEGLYEGLDWLSNNIASKA 181 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~~ 181 (181)
++|+|++++|+++.+.+.+||
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~~ 181 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANKA 181 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999886
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=4.1e-38 Score=218.50 Aligned_cols=180 Identities=78% Similarity=1.279 Sum_probs=159.3
Q ss_pred CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
||++++.+.++.+.++.++|+++|++|||||||++++..+.+....||.+..+..+...++.+++||+||+++++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 89889899998888889999999999999999999998877777778888888778888999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++|+|+|+++++++.....++...+......++|+++++||.|+.+....+++...++...++...++++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888877654457899999999999776666677777777666667788889999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
++|.|++++|+++.+.+.++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887764
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2.8e-36 Score=208.19 Aligned_cols=169 Identities=87% Similarity=1.368 Sum_probs=147.2
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+....++.++|+++|++|+|||||++++..+.+..+.||.+.....+....+.+.+||+||+.++...+..+++++|+++
T Consensus 6 ~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 6 SKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 33344667999999999999999999998777766778888887777788899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|+|+++++++....+++...+.+....++|+++|+||+|+.+....+++.+.++...++...+.++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 99999999999999999998887655567999999999999876666778777777766667788889999999999999
Q ss_pred HHHHHHHhh
Q 030192 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~~~ 178 (181)
|++|.+.+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999988754
No 4
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=2.6e-36 Score=207.04 Aligned_cols=163 Identities=75% Similarity=1.285 Sum_probs=142.5
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+.++.++|+++|++|+|||||++++..+.+..+.||.+.....+...++.+++||+||++++...+..+++++|++++||
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 44567999999999999999999998887777778888887777788899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
|++++.++.+...++.+.+......++|+++|+||+|+.+....+++.+.++....++..++++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999999999988887654467999999999999766566777777766656666778999999999999999999
Q ss_pred HHH
Q 030192 173 LSN 175 (181)
Q Consensus 173 i~~ 175 (181)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 864
No 5
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=8.8e-35 Score=200.50 Aligned_cols=173 Identities=54% Similarity=1.000 Sum_probs=159.9
Q ss_pred HHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc
Q 030192 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (181)
|+.+++.... ++..+|+++|+.||||||+++++..+......||.+++...+...++.+.+||.+|+..++..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4567777765 899999999999999999999999888878899999999999999999999999999999999999999
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-CcceEEEEccccC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~ 162 (181)
++|++|||+|+++++.+.+....+..++......++|+++++||.|+.+....+++...+.+..+. ...+.++.||+.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999998777889999999999999888888999888888776 7889999999999
Q ss_pred CCChHHHHHHHHHHh
Q 030192 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~ 177 (181)
|.|+.+.++||.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999998864
No 6
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=2.8e-35 Score=200.24 Aligned_cols=158 Identities=93% Similarity=1.436 Sum_probs=137.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|.+|||||||++++..+.+..+.||.+.....+....+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999887777778888887777778899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
.++....+++...+......++|+++++||+|+.+....+++...++...++...+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998988876654457999999999999765555666666666656667788999999999999999999864
No 7
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-35 Score=196.71 Aligned_cols=180 Identities=83% Similarity=1.314 Sum_probs=173.9
Q ss_pred CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
||..++++...++.++..+|+++|-.++||||++.++..+++....||+|+++..+.+.++.|.+||..|+++++..|.+
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|+++.+++|||+|+++++++.+....+..++.+....+.|+++.+||.|++......++.+.+.+..++...|++..|||
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
.+|+|+.+.++++.+.+.++
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988765
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-36 Score=200.05 Aligned_cols=163 Identities=20% Similarity=0.381 Sum_probs=140.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--E--EECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.+.+|++++|+.++||||||++|+.+.|. .+.+|+|+.+.. + .+..+++++|||+|+++|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 45699999999999999999999999998 568899988743 3 335689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|||+++..+|++...|+.+...+....+..+++|+||.||.+.. ++....+...++..+..|+++||+.|.||+.+
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr---qvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR---QVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh---hhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 999999999999999999999998776678899999999998863 33333344555566678999999999999999
Q ss_pred HHHHHHHhhhc
Q 030192 170 LDWLSNNIASK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|..|..++.++
T Consensus 177 FrrIaa~l~~~ 187 (221)
T KOG0094|consen 177 FRRIAAALPGM 187 (221)
T ss_pred HHHHHHhccCc
Confidence 99998887653
No 9
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-36 Score=201.76 Aligned_cols=161 Identities=20% Similarity=0.373 Sum_probs=134.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|+.|+|||+|+.||..+.+. ++..|+|+++.. +++..+++++|||+|+++|+.+..+|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45689999999999999999999999988 568899987743 4456789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceE-EEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWY-IQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~S~~~~~gv~ 167 (181)
+|||+++.+||+.+..|+.++-++.. .+.|.++|+||+|+.+..... +..+ .++...+.+ ++++|||++.||+
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~----~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQ----EFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHH----HHHHhcCCcceeecccCCccCHH
Confidence 99999999999999999998877655 568999999999997753221 1111 122223334 8999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
+.|..+...+.++
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877653
No 10
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=4.2e-34 Score=197.02 Aligned_cols=165 Identities=49% Similarity=0.897 Sum_probs=140.7
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.-++...++|+++|++|||||||++++.+..+....||.++....+..+.+.+.+||+||++.++..+..+++.+|++++
T Consensus 8 ~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 8 QKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred hhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 34446779999999999999999999998877666788887777777788999999999999988889999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|+|++++.++.....++..++......++|+++|+||+|+.+....+++...++....+...++++++||++|.|++++|
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence 99999999998888888888765555689999999999998765666676666654445567889999999999999999
Q ss_pred HHHHH
Q 030192 171 DWLSN 175 (181)
Q Consensus 171 ~~i~~ 175 (181)
+++.+
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 99864
No 11
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=6.5e-34 Score=196.25 Aligned_cols=170 Identities=54% Similarity=0.975 Sum_probs=145.3
Q ss_pred HHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccc
Q 030192 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (181)
..+.+.....+.++|+++|++|+|||||++++..+.+....||.+..+..+..+++.+.+||+||++++...+..+++.+
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence 44555554456799999999999999999999988877778888888888888899999999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
|++++|+|+++++++.....++..++......++|+++++||+|+.+....+++.+.+.....+...++++++||++|.|
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 99999999999988988888888887765556799999999999976555667777776655556678899999999999
Q ss_pred hHHHHHHHHH
Q 030192 166 LYEGLDWLSN 175 (181)
Q Consensus 166 v~~~~~~i~~ 175 (181)
++++|++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 12
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=192.82 Aligned_cols=160 Identities=21% Similarity=0.399 Sum_probs=135.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+|++++|+.++|||||+-||..+.|++. .||+|-.+.+ +.. ..++|.||||+|+++|..+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4578999999999999999999999999975 8898866644 333 4589999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||+++.+||..+..|+.++-.+.. +++.+.+++||+|+.+.. ..++.... +...+..++++|||+|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY-----AESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH-----HHhcCCEEEEEecccccCHH
Confidence 99999999999999999999988766 778888999999998732 33333222 22345579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|..|.+.+...
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999987653
No 13
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=1e-33 Score=194.38 Aligned_cols=161 Identities=62% Similarity=1.076 Sum_probs=137.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|||||||++++.+..+..+.||.+..+..+...++.+.+||+||+.++...+..+++.+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58999999999999999999988777788888888778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
++.+...|+..++......+.|+++++||+|+.+....+++...+..... ....+.++++||++|.|++++|+++.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999987655556899999999999766556666655543322 23356788999999999999999999877
Q ss_pred hh
Q 030192 178 AS 179 (181)
Q Consensus 178 ~~ 179 (181)
.+
T Consensus 161 ~~ 162 (169)
T cd04158 161 VA 162 (169)
T ss_pred hh
Confidence 65
No 14
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=1.3e-33 Score=183.93 Aligned_cols=176 Identities=45% Similarity=0.830 Sum_probs=162.2
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccc
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (181)
++.+.+.-.+++.++|+++|..|||||+++++|.+.......||.+++..+...+++.+++||.+|+...+..|++|+..
T Consensus 4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhc
Confidence 34455555567899999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCC
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSG 163 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~ 163 (181)
+|++|+|+|++++.++++..+.+...+......+.|++++.||.|+..+...+++...+++..+ +..+|+++.||+.+|
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence 9999999999999999999999999888877788999999999999988888999998988877 788999999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030192 164 EGLYEGLDWLSNNIASK 180 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~~ 180 (181)
+++.+.++|+++.+.++
T Consensus 164 e~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 15
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.5e-33 Score=194.16 Aligned_cols=174 Identities=34% Similarity=0.592 Sum_probs=147.4
Q ss_pred hHHHHHHhhhc-ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcc
Q 030192 4 TFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82 (181)
Q Consensus 4 ~~~~~~~~~~~-~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (181)
+|.++++-+.. ++.++|+++|++|+|||||++++.++.+....||.+.....+...++++.+||+||+.+++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 56777773322 78899999999999999999999998776666777777777777889999999999999999999999
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc-------CcceEE
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYI 155 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~ 155 (181)
+++|++++|+|+++++++.....++..++......++|+++++||+|+......+++...+++.... ...+.+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999999999999898888888887766555679999999999998777778888888765432 246779
Q ss_pred EEccccCCCChHHHHHHHHHHh
Q 030192 156 QSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 156 ~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
++|||++|.|++++++|+..++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EEeecccCCChHHHHHHHHhhC
Confidence 9999999999999999998653
No 16
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=4.6e-33 Score=189.15 Aligned_cols=157 Identities=66% Similarity=1.132 Sum_probs=133.4
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|+|||||++++..+.+....||.+.....+.+.+..+++||+||++++...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998887776778888877778888899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
++.....++...+......++|+++++||+|+.+.....++...+........+++++++||++|.|++++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88777777877766554467999999999999765555666666655444555678999999999999999999865
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.2e-33 Score=197.09 Aligned_cols=157 Identities=20% Similarity=0.369 Sum_probs=123.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++|+++|+.|+|||||+++|..+.+.. +.+|.+..+ ..+... .+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 479999999999999999999988864 456766544 334443 488999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccC-cceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~S~~~~~gv~~~~ 170 (181)
|++++++++.+..|+..+ ......+.|+++|+||+|+.+..... +..+. .++. .++.+++|||++|.|++++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~----~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDREISRQQGEK----FAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccccCHHHHHH----HHHhcCCCEEEEecCCCCCCHHHHH
Confidence 999999999998877654 43334679999999999996532211 11111 1111 24579999999999999999
Q ss_pred HHHHHHhhh
Q 030192 171 DWLSNNIAS 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
.++.+.+.+
T Consensus 156 ~~l~~~~~~ 164 (202)
T cd04120 156 LKLVDDILK 164 (202)
T ss_pred HHHHHHHHH
Confidence 999987754
No 18
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-34 Score=193.84 Aligned_cols=164 Identities=24% Similarity=0.393 Sum_probs=134.2
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....++|+++|++|||||+++.+|..+.|.. ...|+|+.+. ++.. ..+.+++|||+|+++|+.+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 34577999999999999999999999999874 4678887764 3443 56799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+++|||+++..+++++..|+..+-.+ ....+|.++|+||+|+.... ++....+...+...++.++|+||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R---~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKR---QVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccc---cccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 99999999999999999966555444 33589999999999987632 222223333344455679999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++|-.+.+.+.++
T Consensus 164 eaF~~La~~i~~k 176 (207)
T KOG0078|consen 164 EAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
No 19
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=2.6e-32 Score=190.78 Aligned_cols=173 Identities=35% Similarity=0.638 Sum_probs=143.6
Q ss_pred HHHHHHhhh-cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc
Q 030192 5 FTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~-~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (181)
+..+++.+. ..+..+|+++|++|||||||++++.+..+..+.||.+.....+...+.++.+||+||+.++...+..+++
T Consensus 6 ~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~ 85 (190)
T cd00879 6 FYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFP 85 (190)
T ss_pred HHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhc
Confidence 344445443 2568999999999999999999999888776777887777778888899999999999999888889999
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-----------cCcc
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRH 152 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~ 152 (181)
.+|++++|+|++++.++.....++..++......+.|+++++||+|+.+....+++...+..... ....
T Consensus 86 ~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 86 EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCcee
Confidence 99999999999998889888888888887665567999999999999876666777776654322 1245
Q ss_pred eEEEEccccCCCChHHHHHHHHHHh
Q 030192 153 WYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 153 ~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+.+++|||++|.|++++|+++.+.+
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhhC
Confidence 6799999999999999999998754
No 20
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-32 Score=174.17 Aligned_cols=180 Identities=70% Similarity=1.197 Sum_probs=172.3
Q ss_pred CchhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhh
Q 030192 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
||.-+++++.+++..+.++|+++|..++||||++..+..+......||+|+++..+.+..+.|++||.+|+++.+..|.+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 77788999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|+....++|+|+|+.+.+.+++..+.+.+++.+.+..+.|+++..||.|++++...+++...+++..++...|.+.++|+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
.+|.|+.+.|.|+...+.++
T Consensus 161 ~~gdgL~eglswlsnn~~~k 180 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKEK 180 (180)
T ss_pred ccchhHHHHHHHHHhhccCC
Confidence 99999999999999877653
No 21
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=1.7e-32 Score=188.01 Aligned_cols=157 Identities=36% Similarity=0.615 Sum_probs=136.4
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+|+++|++|||||||++++.+.....+.||.+.....+...++.+++||+||+.+++..+..+++++|++++|||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999874445678888887788889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc---CcceEEEEccccCC------CChHHH
Q 030192 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSG------EGLYEG 169 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~gv~~~ 169 (181)
++.....++..+.......++|+++|+||+|+.+.....++.+.+.+..+. ...+++++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999988876555689999999999998877777777777665542 34678999999998 899999
Q ss_pred HHHHHH
Q 030192 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 22
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.8e-34 Score=184.87 Aligned_cols=162 Identities=24% Similarity=0.405 Sum_probs=139.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccC-ccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||+.+|..+.+....| |+|+.+. .+.+..+++-+|||+|+++|+.+.++|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 456999999999999999999999999987655 4776653 34557789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|||++.+++|..+..|+.++-..-..+++..++|+||+|..+ ...+.+..++.+++....-++++||++.+||+..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999988888776555556788899999999543 3456666778888888889999999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+.++.++.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999998865
No 23
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=1.8e-32 Score=186.74 Aligned_cols=157 Identities=50% Similarity=0.859 Sum_probs=130.4
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCc-c-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
+|+++|++|||||||++++.+..+ . ...||.+.....+...++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 2 45788887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
+.++.....++..+..... ..++|+++++||+|+.+....+++...+.........++++++||++|.|++++|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9888888888777766432 24799999999999987655566666665544344566799999999999999999986
Q ss_pred H
Q 030192 175 N 175 (181)
Q Consensus 175 ~ 175 (181)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
No 24
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=5e-33 Score=197.31 Aligned_cols=161 Identities=18% Similarity=0.295 Sum_probs=128.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+||+++|.+|+|||||+++|..+.+....||.+..+.......+.+.+|||+|++++...+..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888877666666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-------------------C--CHh---HHHhhhCCC------c
Q 030192 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-------------------M--NAA---EITDKLGLH------S 147 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-------------------~--~~~---~~~~~~~~~------~ 147 (181)
+++..+..||..+.... ..++|+|+|+||+|+.+. . ..+ .+.+..... .
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 99999999998876542 357899999999998651 1 111 111111100 0
Q ss_pred ccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
....+.+|++|||++|.||+++|..+++.+..
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 00112579999999999999999999987653
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.1e-33 Score=193.28 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=125.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-EE--EECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.++|+++|.+|+|||||++++..+.+. .+.||.+..+. .+ .+..+.+.+||+||++++..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999998886 44677664443 23 334578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
|++++.++.....|+..+.......++|+++|+||+|+.+...... .......+..++++++|||++|.|++++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT---EEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH---HHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999988765554433335799999999999865422211 1111122334568999999999999999999
Q ss_pred HHHHhhh
Q 030192 173 LSNNIAS 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
+++.+.+
T Consensus 159 l~~~~~~ 165 (172)
T cd04141 159 LVREIRR 165 (172)
T ss_pred HHHHHHH
Confidence 9987764
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.1e-33 Score=196.31 Aligned_cols=163 Identities=20% Similarity=0.291 Sum_probs=124.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.+||+++|++|+|||||+.++..+.+. .+.||.+..+. .+....+.+.+|||+|+++++.++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999998885 45778775543 2334568899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCcccCcc-eEEEEcccc
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDK--------LGLHSLRQRH-WYIQSTCAT 161 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~S~~ 161 (181)
||++++++++.+...|...+... ..++|+++|+||.|+.+... .+.+.+. .....++..+ ++++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999976444433332 25799999999999965422 1111110 0111122334 589999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030192 162 SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~ 179 (181)
+|.|++++|.++.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987754
No 27
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.5e-33 Score=195.07 Aligned_cols=158 Identities=17% Similarity=0.261 Sum_probs=126.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|+.|+|||||+.+|..+.+... .++.+..+ ..+.. ..+.+++||++|++++..++..+++.+|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3568999999999999999999998877543 45555443 33333 4478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++.+++.+..|+.++.... ++.|+++|+||+|+.+.. ..++.... ++..++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~-----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAY-----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999988887775542 579999999999996532 22222221 23345679999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 28
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-33 Score=188.35 Aligned_cols=161 Identities=22% Similarity=0.372 Sum_probs=136.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
-.+|+.++|+.|+|||+|+.+|....|.+. ..|.|+++ ..++...+++++|||+|++.|+....+|++.+.++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 468999999999999999999999998754 56777765 3466688999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|||++..++|..+..|+.+...+.. ++.-+++++||+|+.... ++.++.+..++++.+..++++||+++.||+|.|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 9999999999999999999988754 688999999999997642 334444445555566678899999999999999
Q ss_pred HHHHHHhhhc
Q 030192 171 DWLSNNIASK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
......+..+
T Consensus 161 ~nta~~Iy~~ 170 (216)
T KOG0098|consen 161 INTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHH
Confidence 9988877653
No 29
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=3.4e-32 Score=189.10 Aligned_cols=164 Identities=50% Similarity=0.878 Sum_probs=132.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE-----CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+.++|+++|++|||||||++++....+....||.+........ ..+.+.+|||||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988877667777655543322 56899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCCCChHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gv~~~ 169 (181)
|+|+++++++.....++..+.......++|+++++||+|+.+....+++...+..... ....++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999998888888888777766544467999999999998765445555554443322 223467889999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
++++.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=9e-33 Score=191.34 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=124.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+..+||+++|++|+|||||++++..+.+.. +.||.+..+. .+....+.+.+|||+|+++|..++..+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 567899999999999999999999998864 4677765442 233356789999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-H--------hHHHhhhCCCcccCcce-EEEEcc
Q 030192 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN-A--------AEITDKLGLHSLRQRHW-YIQSTC 159 (181)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~S 159 (181)
|||+++++++.++ ..|+..+... . ++.|+++|+||+|+.+... . ..+....+...+++.+. +|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~-~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEF-C-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH-C-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 4555554332 2 5799999999999864210 0 01111112223334453 799999
Q ss_pred ccCCCC-hHHHHHHHHHHhhhc
Q 030192 160 ATSGEG-LYEGLDWLSNNIASK 180 (181)
Q Consensus 160 ~~~~~g-v~~~~~~i~~~~~~~ 180 (181)
|++|.| |+++|..++..+.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~~ 182 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVNK 182 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC
Confidence 999998 999999999876653
No 31
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=3e-32 Score=186.18 Aligned_cols=155 Identities=40% Similarity=0.682 Sum_probs=133.2
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+|+++|++|+|||||++++.++.+. .+.||.+.....+...++.+.+||+||+++++..+..+++++|++++|||++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 4799999999999999999988765 457888887777888899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccC------CCChHHHH
Q 030192 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGL 170 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~------~~gv~~~~ 170 (181)
.++.....|+..+.... .++|+++|+||+|+......+++...++...+ ++.+++++++||++ ++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 88988888888876543 57999999999999877777777666655544 55688999999999 99999999
Q ss_pred HHHHH
Q 030192 171 DWLSN 175 (181)
Q Consensus 171 ~~i~~ 175 (181)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98763
No 32
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.8e-32 Score=187.83 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+.++..+.+. .+.||.+..+. .+++..+++.+|||+|++++..++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999887 45777765442 223345899999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCcccCcce-EEEEccccCCC
Q 030192 94 SNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (181)
++++++++++. .|+..+.... .+.|+++|+||+|+.+... ...+.........+..+. .+++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999984 5666554332 4799999999999965311 001111111122233344 58999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030192 165 GLYEGLDWLSNNIAS 179 (181)
Q Consensus 165 gv~~~~~~i~~~~~~ 179 (181)
||+++|+.+.+.+..
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
No 33
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.5e-32 Score=188.73 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||++++.++.+. .+.||.+..+. . +....+.+.+|||+|++++......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999998876 44677665442 2 2335678999999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-H--------hHHHhhhCCCcccCcce-EEEEcccc
Q 030192 93 DSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN-A--------AEITDKLGLHSLRQRHW-YIQSTCAT 161 (181)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~S~~ 161 (181)
|+++++++..+ ..|+..+... . ++.|+++|+||+|+.+... . ..+........++..+. ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~-~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF-C-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH-C-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 5565555432 2 5799999999999854100 0 00111112222333444 78999999
Q ss_pred CCCC-hHHHHHHHHHHhhh
Q 030192 162 SGEG-LYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~g-v~~~~~~i~~~~~~ 179 (181)
+|.| |+++|..++....+
T Consensus 159 ~~~~~v~~~F~~~~~~~~~ 177 (178)
T cd04131 159 TSEKSVRDIFHVATMACLN 177 (178)
T ss_pred cCCcCHHHHHHHHHHHHhc
Confidence 9995 99999999986554
No 34
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=9.6e-32 Score=182.59 Aligned_cols=157 Identities=69% Similarity=1.199 Sum_probs=138.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
||+++|++|||||||++++.+..+....++.+.....+...+..+.+||+||+..+...+..++..+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998767788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
++.....++..+.......+.|+++++||+|+......+++.+.+.........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988888665578999999999999876666677777665545556778999999999999999999864
No 35
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.8e-32 Score=189.07 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=121.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++..+.+. .+.||.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 368999999999999999999998885 55778765543 3333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHh--------hhCCCcccCcc-eEEEEccccC
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITD--------KLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~--------~~~~~~~~~~~-~~~~~~S~~~ 162 (181)
|++++++++.+..+|...+.... .++|+++|+||+|+.+..... .+.. .......+..+ +.++++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 99999999999764544444322 579999999999986532111 1100 00001122233 6899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030192 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~ 177 (181)
|.|++++|+.++...
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 36
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=9.4e-32 Score=182.95 Aligned_cols=157 Identities=49% Similarity=0.918 Sum_probs=131.6
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+|+++|++|+|||||++++.+..+....||.+.....+.. ..+.+.+||+||+..+...+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888876665554 457999999999999998899899999999999999998
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc-cCcceEEEEccccCCCChHHHHHHHHH
Q 030192 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
.++.....++..+++.....+.|+++++||+|+......+++...+....+ ...++++++|||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 888888888888877655468999999999999765555666666554333 335678999999999999999998864
No 37
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=1.7e-31 Score=183.92 Aligned_cols=164 Identities=50% Similarity=0.853 Sum_probs=141.8
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+..+.++|+++|++|+|||||++++.+..+....|+.+++...+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 34456899999999999999999999998776677888887777888889999999999998888888889999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+|+++..++.....++..........++|+++++||+|+.+....+++.+.++...+....++++++||++|.|++++|+
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 99998888888888888877765556799999999999987766777877777766666677888999999999999999
Q ss_pred HHHH
Q 030192 172 WLSN 175 (181)
Q Consensus 172 ~i~~ 175 (181)
++.+
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 9875
No 38
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.7e-32 Score=186.80 Aligned_cols=157 Identities=20% Similarity=0.340 Sum_probs=125.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.++.+... .+|.+..+. .+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999887644 456665543 233 3457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
||++++++++.+..|+....... ..+.|+++|+||+|+.+... .++.... ++..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999887765432 25789999999999976432 2222221 2233568999999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|..++..+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 39
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=182.96 Aligned_cols=164 Identities=15% Similarity=0.272 Sum_probs=132.7
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.++.-+||.+.|++|+|||||+|++.+.+|.. +..|+|..+.+ ++...+.+++|||+|+++|+.+.-.+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 44667999999999999999999999999874 56788765533 34456789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCC---CCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
.++|||++++++++.+..|..+++.+..-. .-|.|+++||+|+.... ......+.... .+.+++|||+|||
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK 161 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAK 161 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEeccc
Confidence 999999999999999999999998876533 35999999999986631 11122221111 1346799999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030192 162 SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~ 179 (181)
...||+++|+.+...+++
T Consensus 162 ~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALA 179 (210)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 999999999999987654
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=190.09 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=126.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||++++.++.+. ...||.+..+. .++...+.+++|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45689999999999999999999998875 44566665443 233455789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||++++++++....|+..+.......+.|+++|+||+|+.+.. ..++.... .+..+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999888877665444579999999999986532 21111111 112235799999999999999
Q ss_pred HHHHHHHHhhh
Q 030192 169 GLDWLSNNIAS 179 (181)
Q Consensus 169 ~~~~i~~~~~~ 179 (181)
+|.++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 41
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.1e-31 Score=191.11 Aligned_cols=159 Identities=23% Similarity=0.326 Sum_probs=129.1
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEE----ECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|||||||++++..+.+. .+.||.+..+.... ...+.+.+|||+|++++...+..+++.+|+
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 3467899999999999999999999988876 45778876655433 245799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
+|+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+... .+++ ...+..++++++|||++|.|+
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH------HHHHhcCCEEEEcCCCCCCCH
Confidence 999999999999999988887776432 5799999999999864322 2222 112234567999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++|.++.+.+.+
T Consensus 161 ~~~f~~l~~~~~~ 173 (219)
T PLN03071 161 EKPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988753
No 42
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.1e-32 Score=188.17 Aligned_cols=160 Identities=19% Similarity=0.373 Sum_probs=126.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EE------------ECCEEEEEEEcCCCCCcccchhh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE------------YKNISFTVWDVGGQDKIRPLWRH 80 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~------------~~~~~~~i~D~~g~~~~~~~~~~ 80 (181)
..+||+++|++|+|||||++++.++.+.. ..+|.+..+.. +. ...+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999988764 46666654432 22 23478999999999999999999
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
+++++|++++|||+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..+. .+..+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL-----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH-----HHHcCCeEEEE
Confidence 999999999999999999999999988877665444678999999999987532 21222111 11223468999
Q ss_pred cccCCCChHHHHHHHHHHhhhc
Q 030192 159 CATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
||++|.|++++|+++.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999987764
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=4.6e-32 Score=184.92 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|||||||++++..+.+.. ..||.+..+ ..+.. ..+.+.+|||||++++...+..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999888764 355554222 22333 34678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
+++++++.....|+..+.......++|+++|+||+|+.+..... +....+ .+..+.+++++||++|.|++++|.+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL----ARQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999888887765544679999999999986532211 111111 1122357999999999999999999
Q ss_pred HHHHh
Q 030192 173 LSNNI 177 (181)
Q Consensus 173 i~~~~ 177 (181)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98765
No 44
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.4e-31 Score=181.34 Aligned_cols=155 Identities=22% Similarity=0.370 Sum_probs=124.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||++++..+.+. ...||.+........ ..+.+.+|||+|++++...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999987765 456777766544332 4578999999999999988888999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
|++++++++.+..|+..+.... .++|+++|+||+|+.+.....+..+ ..+...++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999988877776543 2799999999999874432222211 11234567999999999999999999
Q ss_pred HHHHhhh
Q 030192 173 LSNNIAS 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
+.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
No 45
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=1.1e-31 Score=191.55 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=123.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
..+||+++|++|+|||||+++|.++.+. .+.||.+..+. .+....+.+.+|||+|+++|..+...+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 5689999999999999999999998876 45677765543 2233568899999999999999999999999999999
Q ss_pred EECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcccCcce-EEEEccc
Q 030192 92 VDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCA 160 (181)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S~ 160 (181)
||+++++++... ..|+..+... . ++.|+++|+||+|+.+... ...+.......+++..+. .|++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~-~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDY-C-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999885 5665555432 2 4789999999999864200 011111122233334455 6899999
Q ss_pred cCCC-ChHHHHHHHHHHhhh
Q 030192 161 TSGE-GLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~-gv~~~~~~i~~~~~~ 179 (181)
++|. ||+++|..++..+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9998 899999999887654
No 46
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=4.7e-31 Score=185.93 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=123.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEE---ECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|+|||||+++|.++.+.. +.||.+..+. .+. ...+.+.+|||||++++...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988764 4677775542 333 3467899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcc-eEEEEccccCCCC
Q 030192 92 VDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~g 165 (181)
||++++++++.+..|+..+... ....++|+++|+||+|+.+ ....+++.+... ..+ ..++++||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK-----ENGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCceEEEEeCCCCCC
Confidence 9999999999998887665432 1235789999999999973 223333322221 112 3689999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++|+++.+.+.+
T Consensus 156 v~e~f~~l~~~l~~ 169 (201)
T cd04107 156 IEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 47
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=1.9e-31 Score=189.40 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=124.9
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++||+++|++|+|||||+++|.++.+. .+.||.+..+. . +....+.+.+|||+|++.|..+++.+++.+|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999998877 45777775553 2 3335678999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCCcccCcc-eEEEEccccC
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (181)
|++++++++.+..+|...+.... ++.|+++|+||+|+.+... ..+ +....+...++..+ .+|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999777766554433 6799999999999965311 111 11111222223344 3899999999
Q ss_pred CCC-hHHHHHHHHHHhhh
Q 030192 163 GEG-LYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~g-v~~~~~~i~~~~~~ 179 (181)
+.| |+++|..+..+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 885 99999999987654
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.98 E-value=7e-32 Score=184.37 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++..+.+.. ..||.+..+. .+.. ..+.+++|||||++++...+..+++.+|++++|||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887754 3566554332 2333 45678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
++++.+++...+|+..+.......+.|+++++||+|+.+.... ++... + .+..+++++++||++|.|++++|.
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 82 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-L----ARQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH-H----HHHhCCEEEEeeCCCCCCHHHHHH
Confidence 9999999999999888877655568999999999999754321 11111 1 122335799999999999999999
Q ss_pred HHHHHhh
Q 030192 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
++.+.+.
T Consensus 157 ~l~~~l~ 163 (164)
T cd04175 157 DLVRQIN 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
No 49
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=6.5e-31 Score=179.98 Aligned_cols=157 Identities=38% Similarity=0.731 Sum_probs=129.5
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCc-------ccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+|+++|++|+|||||++++.+... ....||.+.....+...+..+.+||+||+.++...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999976432 1335677777777888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--ccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|+++++++.....++..+.......++|+++++||+|+.+....+++...+.... ....+++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99998888888888888887765556899999999999977655555555544322 2335678999999999999999
Q ss_pred HHHHHH
Q 030192 170 LDWLSN 175 (181)
Q Consensus 170 ~~~i~~ 175 (181)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.98 E-value=3.8e-31 Score=181.04 Aligned_cols=157 Identities=25% Similarity=0.409 Sum_probs=123.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+. .+.|+.+..+. .+. ...+.+++|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998876 44677765542 233 34678999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
|+++++++.....|+..+..... ..++|+++|+||+|+.+.. ..++.... .+..+.+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW-----AESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCH
Confidence 99999999988888777765433 2469999999999987422 22222211 1122357899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
+++|+++.+.+.+
T Consensus 156 ~~l~~~l~~~l~~ 168 (168)
T cd04119 156 NEMFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
No 51
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.98 E-value=4.2e-31 Score=183.27 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=123.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||+++|.++.+.. +.||.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988874 5788876653 3443 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
|+++++++..+..|+..+..... ...| ++|+||+|+.+... .+.+. .......+..+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999888877755422 3567 67899999863211 11111 1111122334467899999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 52
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.1e-31 Score=187.36 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.||+++|++|+|||||+++|.++.+.. +.||.+..+. . +.+..+.+++||++|++++...+..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 489999999999999999999988864 4566655443 2 22345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCcccCc-ceEEEEccccCC
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRQR-HWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~S~~~~ 163 (181)
++++++++.....|...+... ..+.|+++|+||+|+.+.....+... ......++.. .++++++||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999988875444443332 25799999999999976433222111 1111112222 257999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030192 164 EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~ 179 (181)
.|++++|.++.+.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987653
No 53
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=4e-31 Score=179.93 Aligned_cols=155 Identities=19% Similarity=0.283 Sum_probs=121.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+.. ..|+.+..+. .+.. ..+.+.+||++|++++..++..+++.+|++++|||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999888753 4555554332 2222 34678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHHH
Confidence 99999999988888887765544679999999999987532 222222211 122447899999999999999999
Q ss_pred HHHHh
Q 030192 173 LSNNI 177 (181)
Q Consensus 173 i~~~~ 177 (181)
+.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98764
No 54
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=4.2e-31 Score=182.13 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=117.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+.++..+.+. .+.|+.+..+. .+....+++.+|||+|++++...+..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 68999999999999999999998875 44666653322 233345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhh--------CCCcccCcc-eEEEEccccCC
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKL--------GLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~-~~~~~~S~~~~ 163 (181)
+++++++......|...+.... .+.|+++|+||+|+.+.. ..+.+.... .....+..+ .++++|||++|
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 9999999998764444444332 579999999999996432 111111110 001112223 37899999999
Q ss_pred CChHHHHHHHHHH
Q 030192 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~gv~~~~~~i~~~ 176 (181)
.|++++|+.+.+.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 55
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=2.4e-31 Score=181.94 Aligned_cols=157 Identities=19% Similarity=0.371 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. +.|+.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 689999999999999999999998763 4667665442 3322 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|++++++++.+..|+..+... ...++|+++|+||+|+.+... .++..+. .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQL-----ADQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence 999999999998887766443 234789999999999975432 2222211 11233478999999999999999
Q ss_pred HHHHHHhhhc
Q 030192 171 DWLSNNIASK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+++.+.+.+|
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999887654
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=3.4e-31 Score=181.99 Aligned_cols=157 Identities=24% Similarity=0.327 Sum_probs=123.2
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|||||||++++.++.+. .+.||.+..+. .+. +..+.+++|||||++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999886 45677776553 232 235789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
+++++++.....|+..+.......+.|+++|+||.|+.+.... ++....+ .++.+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999888877766543345789999999998653221 1111111 12223468899999999999999
Q ss_pred HHHHHHhhh
Q 030192 171 DWLSNNIAS 179 (181)
Q Consensus 171 ~~i~~~~~~ 179 (181)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999987754
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=3.5e-31 Score=181.49 Aligned_cols=159 Identities=23% Similarity=0.384 Sum_probs=126.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|+|||||++++.+..+.. +.|+.+..+. .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999988764 4666665442 3333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||+++++++..+.+|+..+... ...+.|+++++||+|+.+.. ..++..... +..+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999998877776553 23578999999999997532 222222221 22345789999999999999
Q ss_pred HHHHHHHHhhhc
Q 030192 169 GLDWLSNNIASK 180 (181)
Q Consensus 169 ~~~~i~~~~~~~ 180 (181)
+|.++.+.+..+
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999988754
No 58
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-31 Score=181.37 Aligned_cols=161 Identities=20% Similarity=0.381 Sum_probs=132.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||-|+.||..+.|. ...+|+|+.+.+ +++..++.+||||+|+++|+.....|++.+.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 46689999999999999999999999987 557888888754 4457789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|||+++..+|+++..|+.++..+.. .++++++|+||+||.+.... ...-...+++..+..++++||..+.|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV---~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAV---PTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhcccc---chhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999988888888777655 68999999999999763211 111112222333446889999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|..++..+.+
T Consensus 168 F~~~l~~I~~ 177 (222)
T KOG0087|consen 168 FERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=2.9e-31 Score=181.16 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=122.4
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.+||+++|++|+|||||++++.++.+.. ..++.+..+. . +.+..+.+++|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887653 3455443222 2 3334468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|++++.++.....|+..+.......+.|+++++||+|+.+... .++..+. .+..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL-----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999888877655446799999999999875432 1222111 12234578999999999999999
Q ss_pred HHHHHHh
Q 030192 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=7.4e-31 Score=178.85 Aligned_cols=154 Identities=21% Similarity=0.380 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++|+++|++|+|||||++++.++.+.. +.||.+..+. .+... .+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999988764 4677775543 33333 468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
|++++++++.+..|+..+.... ..+.|+++|+||.|+.+.... .+....+ .+..+.+++++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999988887665432 246999999999998654321 1111111 122234789999999999999999
Q ss_pred HHHHH
Q 030192 172 WLSNN 176 (181)
Q Consensus 172 ~i~~~ 176 (181)
++.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.2e-31 Score=186.06 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=121.1
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-E--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+|+++|.+|+|||||+++|..+.+.. ..||.+..+. . +.+..+.+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888764 4556553332 2 223346799999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
++++++..+..|+..+..... ..+.|+++|+||+|+.+........ .....+..+++++++||++|.|++++|.+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE---GAALARRLGCEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH---HHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 999999999888877654322 2578999999999986532211110 01112223457999999999999999999
Q ss_pred HHHHhhh
Q 030192 173 LSNNIAS 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
+.+.+.+
T Consensus 158 l~~~l~~ 164 (190)
T cd04144 158 LVRALRQ 164 (190)
T ss_pred HHHHHHH
Confidence 9988764
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=3.8e-31 Score=180.50 Aligned_cols=157 Identities=17% Similarity=0.282 Sum_probs=121.2
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccc-eeEEEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.++|+++|++|+|||||++++..+.+... .||.+ .....+. +..+.+++|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37899999999999999999999887643 45543 1122333 34567889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
|+++++++.+...|+..+.......++|+++|+||+|+.+..... +....+ .+..+.+++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL----AEEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH----HHHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999998888777765444679999999999986532211 111111 112235789999999999999999
Q ss_pred HHHHHh
Q 030192 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~~ 177 (181)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998764
No 63
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=3.6e-30 Score=174.34 Aligned_cols=157 Identities=36% Similarity=0.680 Sum_probs=133.6
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
.|+++|++|+|||||++++.+..+. .+.|+.+.....+....+.+.+||+||+..+...+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3799999999999999999998876 457888887777777789999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
+++.....++..........++|+++|+||+|+.+....+++...+.........++++++|+++|.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 888888888888877655567999999999998776555566666655555556678999999999999999999865
No 64
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.9e-31 Score=187.40 Aligned_cols=158 Identities=23% Similarity=0.453 Sum_probs=126.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE---CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+||+++|++|+|||||++++.+..+.. ..||.+..+. .+.. ..+.+++||++|++++...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4899999999999999999999988764 3567665543 2322 35789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||+++++++..+..|+..+........+|+++|+||+|+.+... .++..+ ..+..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK-----LAKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH-----HHHHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999888877654445688999999999875322 112111 1122346799999999999999
Q ss_pred HHHHHHHHhhh
Q 030192 169 GLDWLSNNIAS 179 (181)
Q Consensus 169 ~~~~i~~~~~~ 179 (181)
+|+++.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=4.4e-31 Score=180.32 Aligned_cols=157 Identities=20% Similarity=0.303 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EE--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|||||||++++.+..+... .++.+..+ .. +....+.+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 4899999999999999999998877643 44444222 12 22345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+++++++.....|+..+.......++|+++++||+|+.+.. ..++..... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888777665554579999999999987532 222222111 12235799999999999999999
Q ss_pred HHHHHhhh
Q 030192 172 WLSNNIAS 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
No 66
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=6.9e-31 Score=186.82 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE---CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|+|||||+++|.++.+.. +.||.+..+. .+.. ..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999988764 4677776543 3333 357999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
||+++++++..+..|+..+..... ..++|+++|+||+|+.+... .++... ..+..+++++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-----~~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-----FAQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEEECCCCCCHH
Confidence 999999999999887776655432 24578999999999975321 111111 112233568899999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++...+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 67
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-31 Score=171.06 Aligned_cols=161 Identities=20% Similarity=0.386 Sum_probs=127.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--E-EE-CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--V-EY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~-~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
-.+|++++|...+|||||+.++....|.. ...|.|+.+.. + .. ..+++++|||+|+++++.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 34699999999999999999999998864 46788876532 2 22 45799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
+||+++.+|+.....|. .+++...+.+.|+|+++||||+.++... ..+.+...+++.|..+||+|||.+.||+.+|
T Consensus 100 myDitNeeSf~svqdw~-tqIktysw~naqvilvgnKCDmd~eRvi---s~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWI-TQIKTYSWDNAQVILVGNKCDMDSERVI---SHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred EEecCCHHHHHHHHHHH-HHheeeeccCceEEEEecccCCccceee---eHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 99999999997766655 5556667789999999999999765321 1111222233344468899999999999999
Q ss_pred HHHHHHhhhc
Q 030192 171 DWLSNNIASK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+.+++.+.++
T Consensus 176 e~lv~~Ic~k 185 (193)
T KOG0093|consen 176 ERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 68
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=166.93 Aligned_cols=173 Identities=32% Similarity=0.649 Sum_probs=159.4
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (181)
+.++.+.++ ...+.+.++|..+||||||+|....+.+.++ .||.|++...+....+.+.+||.||+.+++..|..|++
T Consensus 9 L~wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR 87 (186)
T KOG0075|consen 9 LVWICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 87 (186)
T ss_pred HHHHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhh
Confidence 444544455 5669999999999999999999988877755 89999999999999999999999999999999999999
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
.+++++||+|+++++.++.....+.+++..+.+.++|+++++||.|+..+....++...+++..++...+.+|.+|+++.
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~ 167 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEK 167 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030192 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~ 178 (181)
.|++-+..|+.+.-.
T Consensus 168 ~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 168 VNIDITLDWLIEHSK 182 (186)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999988643
No 69
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=5.6e-31 Score=180.24 Aligned_cols=157 Identities=22% Similarity=0.381 Sum_probs=123.5
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ..+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 3799999999999999999999887763 356655443 23333 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
||+++++++..+..|+..+.... ..+.|+++++||+|+.+... .++..... +..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999887765432 25689999999999865432 22222211 123457999999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|..+.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 70
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-31 Score=170.03 Aligned_cols=161 Identities=22% Similarity=0.336 Sum_probs=132.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
--+|++++|+.|+|||+|+.+|...++... ..|+|+.+. .+.++.+++++|||+|+++|+.....|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 347999999999999999999999998754 668887763 344467899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|||+++.++|+.+..|+.+...... +++-+++++||.|+.+..++. -.....+.+.....+.++|+++|+||++.|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~Vt---flEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVT---FLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhh---HHHHHhhhcccceeeeeecccccccHHHHH
Confidence 9999999999999999988766543 678899999999997653322 112223344455568899999999999999
Q ss_pred HHHHHHhhhc
Q 030192 171 DWLSNNIASK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
-...+.+..|
T Consensus 164 l~c~~tIl~k 173 (214)
T KOG0086|consen 164 LKCARTILNK 173 (214)
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=4.3e-30 Score=175.71 Aligned_cols=154 Identities=22% Similarity=0.418 Sum_probs=120.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCcccee--EEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+||+++|++|+|||||++++..+.+.. ..++.+.. ...+...+ +.+++||+||++++...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999887764 34555433 33444444 689999999999999989999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHh---HHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAA---EITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.. ..+ ++.+.... ..++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~e~Sa~~~~~ 153 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGM-------LAVLETSAKESQN 153 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-------cEEEEEECCCCCC
Confidence 999999999998888877765532 3579999999999987542 112 22222221 3688999999999
Q ss_pred hHHHHHHHHHHh
Q 030192 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~i~~~~ 177 (181)
++++|+++.+.+
T Consensus 154 v~~~~~~l~~~l 165 (165)
T cd01864 154 VEEAFLLMATEL 165 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=4.1e-30 Score=179.19 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE---ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.++.+.. +.|+.+..+. .+. ...+++.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999988763 4566554432 232 23578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCcccCcce-EEEEccccCCCC
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGEG 165 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~g 165 (181)
|++++++++.....|...+... ..+.|+++|+||+|+.+.. ..++..+ ..+..+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-----VAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-----HHHHcCCcEEEEccCCCCCC
Confidence 9999999998876444333322 2578999999999986532 1111111 1112223 689999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++|..+.+.+..
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987764
No 73
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=1.9e-30 Score=176.15 Aligned_cols=154 Identities=16% Similarity=0.233 Sum_probs=112.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+||+++|++|+|||||+.++..+.+... .|+.+.....+..+ .+.+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 4899999999999999999998877644 34333222334444 47799999999975 2456789999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccC-cceEEEEccccCCCChHHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
+++++++++..|+..+.......++|+++|+||+|+.... .+++.........++ ..+.+++|||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999988888766544678999999999984310 011111111111212 24679999999999999999999
Q ss_pred HHHh
Q 030192 174 SNNI 177 (181)
Q Consensus 174 ~~~~ 177 (181)
.+.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
No 74
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.6e-30 Score=181.41 Aligned_cols=158 Identities=23% Similarity=0.376 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.++.+.. +.|+.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998864 5677665432 3333 4578899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
|+++++++..+..|+..+.... ..++|+++++||+|+.+..... +....+ .+..+++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSF----CDSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999998777665432 2468999999999987543211 111111 112344789999999999999999
Q ss_pred HHHHHhhhc
Q 030192 172 WLSNNIASK 180 (181)
Q Consensus 172 ~i~~~~~~~ 180 (181)
++.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999987653
No 75
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.9e-30 Score=177.49 Aligned_cols=156 Identities=15% Similarity=0.233 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE---EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
++|+++|++|+|||||++++.++.+. .+.|+.+..+.. .....+.+.+|||||++++...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998875 345655543322 22345789999999999999988888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+++++++.....|+..+... ....++|+++|+||+|+.+........ ........+..++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE---GAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH---HHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 99999999988887655332 122579999999999996532221110 0111122345789999999999999999
Q ss_pred HHHHH
Q 030192 172 WLSNN 176 (181)
Q Consensus 172 ~i~~~ 176 (181)
++...
T Consensus 159 ~l~~~ 163 (165)
T cd04140 159 ELLNL 163 (165)
T ss_pred HHHhc
Confidence 98753
No 76
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=2.2e-30 Score=182.24 Aligned_cols=157 Identities=22% Similarity=0.390 Sum_probs=124.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|+|||||+++|.+..+. .+.||.+..+ ..+.. ..+.+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999998876 4567776544 33333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||++++++++.+..|+..+.... ...|+++|+||+|+.+.... ++..+.. ++.+++++++|+++|.|+++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHHH
Confidence 999999999999988887765432 46899999999998764321 2222111 12345799999999999999
Q ss_pred HHHHHHHHhhh
Q 030192 169 GLDWLSNNIAS 179 (181)
Q Consensus 169 ~~~~i~~~~~~ 179 (181)
+|+++.+.+..
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 77
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=2.4e-30 Score=177.46 Aligned_cols=157 Identities=19% Similarity=0.317 Sum_probs=124.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+... .++.+.... .+.. ....+.+||+||++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998876543 455554432 2333 456899999999999999888999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|++++.++..+..|+..+.... .+++|+++|+||.|+.+.. ..++..... +..+++++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887775543 2679999999999987432 222332221 223457999999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|.++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 78
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1e-29 Score=174.64 Aligned_cols=159 Identities=14% Similarity=0.304 Sum_probs=123.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--E--EEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
...+||+++|++|+|||||++++.++.+.. ..++.+..+. . +....+.+++||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456899999999999999999999888764 4566665532 2 3335578899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
+|||+++++++.....|...+..... ..+.|+++++||+|+.... ..++..+..... ...+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEECCCCCC
Confidence 99999999999998888876655322 2468999999999986432 233333222111 123689999999999
Q ss_pred hHHHHHHHHHHh
Q 030192 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~i~~~~ 177 (181)
++++|..+++.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 79
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2e-30 Score=181.33 Aligned_cols=157 Identities=18% Similarity=0.402 Sum_probs=122.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|||||||++++..+.+. ...++.+..+.. +.. ..+.+++|||||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988875 345666554432 333 457899999999999998888899999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|+++++++.++..|+..+... ...++|+++++||+|+.... ..++..... +..+.+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999888877666543 22478999999999986432 222222211 223457999999999999999
Q ss_pred HHHHHHHhhhc
Q 030192 170 LDWLSNNIASK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|.++.+.+.++
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 80
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=3.7e-30 Score=175.97 Aligned_cols=155 Identities=21% Similarity=0.381 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++|+++|++|||||||++++.+..+. ...|+.+..+. .+... .+.+.+||+||++++...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988876 44677665443 33333 36899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
||+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999888877665543 2468999999999987532 222222221 123457899999999999999
Q ss_pred HHHHHHHh
Q 030192 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
|+++...+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=6.1e-30 Score=176.31 Aligned_cols=159 Identities=17% Similarity=0.237 Sum_probs=116.9
Q ss_pred EEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EE--EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192 20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
|+++|++|+|||||++++.++.+.. +.|+....+. .+ ....+.+.+|||||++++...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988764 3455443332 22 234568999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHh--------hhCCCcccCcc-eEEEEccccCCCC
Q 030192 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITD--------KLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~S~~~~~g 165 (181)
++++++.....|...+.... .++|+++|+||+|+..... .+++.. .......+..+ ..++++||++|.|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 99999988764444443322 5799999999999865321 111110 00011122233 2789999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++|+.+.+.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988754
No 82
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=6.2e-30 Score=179.33 Aligned_cols=150 Identities=23% Similarity=0.328 Sum_probs=121.2
Q ss_pred EcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEE----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 23 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 23 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
+|++|||||||++++..+.+.. +.||.+..+.... ...+.+.+|||+|++++..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999888764 5778876664332 2468999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
.++..+..|+..+.... .++|+++|+||+|+.......+.. ...+..++.+++|||++|.|++++|.++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-----TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999988777676532 579999999999986432211111 12234567899999999999999999999877
Q ss_pred hh
Q 030192 178 AS 179 (181)
Q Consensus 178 ~~ 179 (181)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 54
No 83
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=3.8e-30 Score=175.23 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..++.+..+. .+. ...+.+.+||+||++++...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888753 4555554432 223 33468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|+++++++..+..|+...... ..+++|+++++||+|+.+... .++..... +..++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999988887765433 236799999999999865322 22222211 1223579999999999999999
Q ss_pred HHHHHHh
Q 030192 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 84
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=2.9e-30 Score=175.88 Aligned_cols=152 Identities=18% Similarity=0.341 Sum_probs=119.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EE----ECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+||+++|++|+|||||++++.++.+.. ..|+.+..+.. +. ...+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999987763 45676665432 22 346789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||+++++++.....|+..+... ..++|+++|+||+|+..... .++.... .+..+++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEAL-----AKRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCCHHH
Confidence 99999999999888877666432 25799999999999865432 2222211 112334789999999999999
Q ss_pred HHHHHHHH
Q 030192 169 GLDWLSNN 176 (181)
Q Consensus 169 ~~~~i~~~ 176 (181)
+|+++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 85
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1.1e-29 Score=173.06 Aligned_cols=154 Identities=17% Similarity=0.267 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.++.+... .++.+.... .+....+.+.+|||+|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998887643 444443322 22334578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
|++++.++.....|+..+... ..++|+++++||+|+.... .++.. ...+..+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-----NFAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-----HHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999998888777666442 2468999999999985321 11111 111223457899999999999999999
Q ss_pred HHHHhhh
Q 030192 173 LSNNIAS 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
+.+.+.+
T Consensus 153 l~~~~~~ 159 (161)
T cd04124 153 AIKLAVS 159 (161)
T ss_pred HHHHHHh
Confidence 9987765
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.4e-29 Score=171.93 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=122.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeE--EEEE--ECCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~--~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
++.+||+++|++|+|||||+++|.++.+. .+.||.+..+ ..+. +..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56789999999999999999999998875 4567776543 2333 3447899999999999998889899999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
++|+|++++.++.....|+...... .++|+++|+||+|+.+.. ..+++.+.++.. .++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999988887777654222 479999999999986432 223444443332 3578999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030192 164 EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~ 179 (181)
.|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999988754
No 87
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=6.9e-30 Score=178.92 Aligned_cols=156 Identities=17% Similarity=0.297 Sum_probs=120.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc--ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+.. ..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988763 5666665442 2333 446788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
||++++.++.....|+..+... ..+.|+++|+||+|+.+... .++..+ +....+++++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-----FADEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-----HHHHcCCeEEEEeCCCCCC
Confidence 9999999998887777665443 24789999999999864321 111111 1122345788999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030192 166 LYEGLDWLSNNIASK 180 (181)
Q Consensus 166 v~~~~~~i~~~~~~~ 180 (181)
++++|+.+.+.+.++
T Consensus 154 v~~l~~~i~~~~~~~ 168 (193)
T cd04118 154 VDELFQKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877653
No 88
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=2.5e-30 Score=176.30 Aligned_cols=154 Identities=26% Similarity=0.438 Sum_probs=123.7
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||+++|.++.+.. +.+|.+..... +.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988774 46676655543 333 55789999999999999988899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+++++++..+..|+..+..... .+.|+++++||.|+.+.. ..++..+.. +..+.+++++|++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988877765543 469999999999987622 222222111 12234799999999999999999
Q ss_pred HHHHHhh
Q 030192 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
.+++.++
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 89
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.8e-31 Score=168.37 Aligned_cols=158 Identities=21% Similarity=0.352 Sum_probs=129.9
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
-+||+++|..|+|||+|+++|.++-|+ ...+|+|..+ ..++++++++++|||+|+++|+.+..+|++.++++++|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 479999999999999999999999877 4577877654 34556889999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
||++...+|.-+.+|+.++-.... .+..-|+|+||.|+.+.. ++-+..+..+....+..+.++||+...|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drr---evp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRR---EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhh---hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999888766544 457789999999987753 3333334444444556788999999999999999
Q ss_pred HHHHHhh
Q 030192 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
.+.-.+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 8876554
No 90
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=6e-30 Score=175.85 Aligned_cols=158 Identities=21% Similarity=0.397 Sum_probs=122.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcc-cchhhccccccEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 90 (181)
.++|+++|++|+|||||++++....+. .+.++.+..+. .+.. ..+.+.+||++|+++++ ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 579999999999999999999988876 34566654432 3333 44789999999999886 467888899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccC---CCCh
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATS---GEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gv 166 (181)
|||+++++++.....|...+.......++|+++|+||+|+.+.... .+..+.+. +...++++++||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999888877766554467999999999998654321 12222121 22335789999999 9999
Q ss_pred HHHHHHHHHHhh
Q 030192 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~~~ 178 (181)
+++|..+++.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 91
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=6.6e-30 Score=181.34 Aligned_cols=160 Identities=23% Similarity=0.409 Sum_probs=125.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
...+||+++|++|+|||||+++|.+..+....|+.+..+. .+.. ..+.+.+|||||++++...+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999999887666777765442 3333 34689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
|||+++++++..+..+|...+.. ....+.|+++|+||+|+...... ++.... .+..++.++++||++|.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL-----AKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 99999999999998876655543 22346899999999998754322 222111 12234578999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|+++.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (211)
T PLN03118 167 QCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=8.1e-30 Score=173.91 Aligned_cols=157 Identities=21% Similarity=0.438 Sum_probs=123.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||++++.+..+.. ..++.+..+. .+... .+.+.+||+||++++...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999887653 3456555432 33443 368999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|++++++++.+..|+..+..... .++|+++++||+|+.... ..+..... .++.+++++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAF-----AEEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999888887766655432 579999999999987632 22222221 12234579999999999999999
Q ss_pred HHHHHHhhhc
Q 030192 171 DWLSNNIASK 180 (181)
Q Consensus 171 ~~i~~~~~~~ 180 (181)
+.+.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988764
No 93
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=169.93 Aligned_cols=156 Identities=19% Similarity=0.353 Sum_probs=128.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
++.+|+|++|+|||||+-+|..+.|. ++..|+|+.+. .++++.++++|||++|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 56789999999999999999988876 45667776643 35567899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
|+++.+||.+...|+..+..+- ...|-++|+||.|.++........ ...++.+.++.+|++|+|.++|++..|..
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~d---Ar~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTED---ARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHH---HHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999998886543 478999999999998754322111 12234456677999999999999999999
Q ss_pred HHHHhh
Q 030192 173 LSNNIA 178 (181)
Q Consensus 173 i~~~~~ 178 (181)
|.+.+.
T Consensus 164 it~qvl 169 (198)
T KOG0079|consen 164 ITKQVL 169 (198)
T ss_pred HHHHHH
Confidence 887654
No 94
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5e-30 Score=179.40 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=111.9
Q ss_pred ccEEEEEcCCCCChHHHHh-hHhcCCc-----c-cccCccce-e-EE-----------EEEECCEEEEEEEcCCCCCccc
Q 030192 17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~-~l~~~~~-----~-~~~~~~~~-~-~~-----------~~~~~~~~~~i~D~~g~~~~~~ 76 (181)
.+||+++|++|+|||||+. ++.+..+ . .+.||.+. . +. .+++..+.+++|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 5654432 2 34577642 1 11 2344578999999999875 2
Q ss_pred chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHHH
Q 030192 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEIT 140 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----------------~~~~~ 140 (181)
....+++++|++++|||++++.++..+...|...+.... .+.|+++|+||+|+.+... ...+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 455688999999999999999999999754434333322 4789999999999864210 01122
Q ss_pred hhhCCCcccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192 141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~ 176 (181)
.......++..+++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 222233344556689999999999999999998864
No 95
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=9e-30 Score=181.08 Aligned_cols=160 Identities=21% Similarity=0.355 Sum_probs=126.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||+++|.+..+. .+.+|.+..+. .+.. ..+.+++||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999998876 45677776543 3333 3478999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... ++..+.+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999888877665432 257999999999998654322 12222221 22356899999999999999
Q ss_pred HHHHHHHHhhh
Q 030192 169 GLDWLSNNIAS 179 (181)
Q Consensus 169 ~~~~i~~~~~~ 179 (181)
+|+++...+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 96
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=3.7e-29 Score=180.64 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=122.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccce-eEEEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
++|+++|++|+|||||+++|.++.+.. +.||.+. ....+. +..+.+.+|||+|++.+...+..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999888764 4566642 222333 345789999999999998888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcC--------CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 94 SNDRDRVVEARDELHRMLNE--------DELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~--------~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
++++++++.+..|+..+... ....++|+++|+||+|+.. ....+++.+..... ..+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence 99999999998888777543 1235799999999999974 23444444443321 2457899999999
Q ss_pred CChHHHHHHHHHHh
Q 030192 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~gv~~~~~~i~~~~ 177 (181)
.|++++|+++.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
No 97
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=9.5e-30 Score=174.51 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
++|+++|++|+|||||++++.++.+.. ..|+.+..+ ..+. ...+.+++||+||++++..++..+++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 689999999999999999999888753 455555333 2233 344789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcc-eEEEEccccCCCChHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~gv~~~~ 170 (181)
++++++++....|...+.......+.|+++++||.|+.+... .++.... .+..+ .+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL-----SQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH-----HHHcCCceEEEeeCCCCCCHHHHH
Confidence 999999999988877776544446799999999999865432 1121111 11222 578999999999999999
Q ss_pred HHHHHHhh
Q 030192 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~~~ 178 (181)
.+++..+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987653
No 98
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=2.5e-29 Score=171.43 Aligned_cols=155 Identities=20% Similarity=0.405 Sum_probs=122.8
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEE--EECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+ ....+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999998775 566666433 233 33457899999999999999899999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|+++++++.....|+..+..... .+.|+++++||+|+.... ..++..... +..++.++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 999999999999888877766543 679999999999987422 222222211 112357999999999999999
Q ss_pred HHHHHHHh
Q 030192 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
|+++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99998875
No 99
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.4e-29 Score=174.51 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++.++.+.. +.|+....+ ..+.. ..+.+.+||+||++++...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988764 345543222 12333 34668899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCcccCcc-eEEEEccccCC
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---------KLGLHSLRQRH-WYIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~S~~~~ 163 (181)
++++++++.....|...+... ..++|+++++||+|+.+......... .......+..+ .+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999988876555555433 46899999999999865321111110 00111112223 26899999999
Q ss_pred CChHHHHHHHHHHh
Q 030192 164 EGLYEGLDWLSNNI 177 (181)
Q Consensus 164 ~gv~~~~~~i~~~~ 177 (181)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 100
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=2e-29 Score=176.88 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=116.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccc--------hhhcccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--------WRHYFQN 84 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 84 (181)
+||+++|++|+|||||++++.++.+.. +.|+.+... ..+.. ..+.+++|||||...+... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988764 466665432 22333 3478999999997654211 2344688
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEcccc
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+|++++|||++++++++....|+..+.... ...++|+++|+||+|+...... .+..+.+. .+..++++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999988887776543 2357999999999999653211 11111110 11234579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030192 162 SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~ 179 (181)
+|.|++++|+.+.+.+..
T Consensus 158 ~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 158 YNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999987654
No 101
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=2.3e-29 Score=171.34 Aligned_cols=155 Identities=25% Similarity=0.437 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..|+.+..+. .+.. ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988753 5566665432 2333 4478999999999999988899999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
|+++++++.....|+..+.......+.|+++++||+|+.... ..++.... .+..+++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF-----ARKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH-----HHHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999888877766665555689999999999997432 22222221 122345799999999999999999
Q ss_pred HHHHHh
Q 030192 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~~ 177 (181)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 988753
No 102
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.6e-29 Score=172.02 Aligned_cols=154 Identities=20% Similarity=0.388 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.||+++|++|||||||++++.+..+. ...|+.+..+ ..+... .+.+++||+||+.++...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988875 3456655443 233333 367999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|+++++++.....|+..+..... .+.|+++++||+|+.+.. ..++..... +..+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988887765432 369999999999995432 222222221 1223578999999999999999
Q ss_pred HHHHHHh
Q 030192 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
.++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998754
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.7e-29 Score=171.99 Aligned_cols=160 Identities=14% Similarity=0.212 Sum_probs=117.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE-E--EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+||+++|++|+|||||++++.++.+....++....+ . .+....+++.+|||||++++...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999988865444322111 1 2333668999999999988877777778999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--CCcccCcceEEEEccccCCCChHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
++++++.....+|...+.... .+.|+++|+||+|+.+........+... ...+. ....++++||++|.|++++|..
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR-EIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh-cccEEEEeccccccCHHHHHHH
Confidence 999999888766666555433 4799999999999976543211111100 00000 0126889999999999999999
Q ss_pred HHHHhhh
Q 030192 173 LSNNIAS 179 (181)
Q Consensus 173 i~~~~~~ 179 (181)
+...+..
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9887754
No 104
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4.5e-30 Score=167.53 Aligned_cols=161 Identities=22% Similarity=0.409 Sum_probs=131.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEE--E---EECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--V---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~--~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
..+++.++|++-+|||||++.|..+++.+ ..||.|.++.. + .+..+++++|||+|+++|+.+..+|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 45899999999999999999999999885 47898877632 2 235689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+|||+++..||+....|..+.......+.++ ..+|++|+|+.... ++..+....+++..+..++|+|+++|.||++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR---qVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR---QVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc---cccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 9999999999999999998887766655555 46888999997643 2222222233445566799999999999999
Q ss_pred HHHHHHHHhhh
Q 030192 169 GLDWLSNNIAS 179 (181)
Q Consensus 169 ~~~~i~~~~~~ 179 (181)
.|..+.+.+..
T Consensus 164 AF~mlaqeIf~ 174 (213)
T KOG0091|consen 164 AFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 105
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=1e-28 Score=169.79 Aligned_cols=159 Identities=15% Similarity=0.269 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|||||||++++.+..+.. ..++.+..+ ..+.. ..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999987653 345555433 22333 4467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
|+++++++.....|...+..... ..++|+++|+||+|+.++. ..++........ ...+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence 99999888888777665544322 3479999999999997422 233332222111 12478999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
++++++.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 106
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=2.2e-29 Score=173.46 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EE--EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+|++++|++|+|||||+.++.++.+... .||....+ .. ++...+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999998877643 44432111 12 22335788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---------hHHHhhhCCCcccCcce-EEEEccccCC
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---------AEITDKLGLHSLRQRHW-YIQSTCATSG 163 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 163 (181)
++++++++.....|...+... ..+.|+++++||+|+...... ..+.......+.+..+. .++++||++|
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999988865444433322 246999999999998643110 00000001111122233 7999999999
Q ss_pred CChHHHHHHHHH
Q 030192 164 EGLYEGLDWLSN 175 (181)
Q Consensus 164 ~gv~~~~~~i~~ 175 (181)
.|++++|+.+.-
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999988764
No 107
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=8.3e-29 Score=168.86 Aligned_cols=157 Identities=18% Similarity=0.310 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||++++....+... .++.+..+. .+....+.+.+||+||+.++...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999998877533 444333222 223345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
++++.++.....|+..+.......++|+++|+||+|+.... ..++..... ++.+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 99999999999999888876555689999999999987621 222211111 12234789999999999999999
Q ss_pred HHHHHhhh
Q 030192 172 WLSNNIAS 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99987765
No 108
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=2e-29 Score=178.62 Aligned_cols=159 Identities=18% Similarity=0.308 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE--CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+||+++|++|+|||||++++.+..+.. ..++.+..+. .+.. ..+.+.+||++|++++...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 346899999999999999999999887653 4566665542 2333 4467999999999999988999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+|||++++++++.+..|+..+.... ..+.|+++++||+|+.+.. ..++..+.. +..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888877665432 2579999999999987532 222222221 2234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030192 168 EGLDWLSNNIAS 179 (181)
Q Consensus 168 ~~~~~i~~~~~~ 179 (181)
++|.++++.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 109
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=3.5e-29 Score=170.93 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC--Ccc-cccCccceeEE--EEE---ECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVE--TVE---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~--~~~-~~~~~~~~~~~--~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+||+++|++|||||||++++..+ .+. .+.++.+..+. .+. ...+++.+||+||++.+...+..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 444 45667665542 222 24589999999999999888899999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+|||+++++++.....|+..+.... .++|+++|+||+|+.+...... ..+.+. ...+.+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999988887776655432 4699999999999865432221 111111 11234789999999999999
Q ss_pred HHHHHHHHh
Q 030192 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~~ 177 (181)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
No 110
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.5e-28 Score=169.59 Aligned_cols=160 Identities=18% Similarity=0.296 Sum_probs=117.5
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE-EEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+.||+++|++|||||||++++.++.+.. +.|+.+..+ ..+.. ..+.+.+|||+|++++...+..++.++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988764 456655433 23333 4568899999999999988888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCcccCc-ceEEEEccccC
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLG--------LHSLRQR-HWYIQSTCATS 162 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~S~~~ 162 (181)
|+++++++......|...+... ..+.|+++++||+|+.+..... ++..... ....+.. ..++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999988876555544432 2478999999999986532111 1110000 0001111 23789999999
Q ss_pred CCChHHHHHHHHHHh
Q 030192 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~ 177 (181)
|.|++++|.++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 111
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.1e-29 Score=159.74 Aligned_cols=180 Identities=56% Similarity=0.943 Sum_probs=167.2
Q ss_pred CchhHHHHHHhhhcc-cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192 1 MGLTFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (181)
|+--++.+++.+... +..+++++|.-|+||+++.-++.-.+.....|+++++..++.+.+.++++||..|+-..+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 455567788887775 8999999999999999999999988888899999999999999999999999999999999999
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.|+.+.|++|||+|.++.+........+..++.+.++++..+++++||.|........+....+++..++...+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999999999999999998888999999999999988888889999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030192 160 ATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~~~ 180 (181)
|.+|+|++++++|+.+-+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988765
No 112
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=1.1e-28 Score=175.94 Aligned_cols=155 Identities=18% Similarity=0.163 Sum_probs=115.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cccCccc--eeEEEEE--ECCEEEEEEEcCCCCCcccchhhccc-cccEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~--~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 90 (181)
+||+++|++|+|||||+++|..+.+. .+.++.+ .....+. +....+.+||++|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999887764 3445543 2223333 3567899999999982 23344556 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
|||+++++++....+|+..+.......++|+++|+||+|+.+..... +....+ ....+++++++||++|.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999888888777665444679999999999986543211 111111 1223457899999999999999
Q ss_pred HHHHHHHhh
Q 030192 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~~~ 178 (181)
|+++++.+.
T Consensus 155 ~~~l~~~~~ 163 (221)
T cd04148 155 LEGIVRQIR 163 (221)
T ss_pred HHHHHHHHH
Confidence 999998875
No 113
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=6.9e-29 Score=169.71 Aligned_cols=155 Identities=15% Similarity=0.221 Sum_probs=113.9
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE---EEEEECCEEEEEEEcCCCCC-cccchhhccccccEEEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV---ETVEYKNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||++++....+.. +.++....+ ..+++..+.+++||+||+.+ .......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999877653 344443222 22333456799999999985 34456778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCC-CChHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG-EGLYEG 169 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~gv~~~ 169 (181)
++++++++.+..|+..+..... ..++|+++|+||+|+.+.. ..++..+. .+..+.+++++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999988887766554332 3579999999999986432 12221111 1122347899999999 599999
Q ss_pred HHHHHHHhh
Q 030192 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~~~ 178 (181)
|..+++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=8.6e-29 Score=170.00 Aligned_cols=157 Identities=21% Similarity=0.283 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE---EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
+||+++|++|+|||||+++|.+..+. ...|+..... ....+..+.+++||+||++++......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998874 3344433222 1223346789999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCcccCcce-EEEEccccCCC
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE 164 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (181)
++++.++......|...+.... .++|+++|+||+|+.+...... +............+. +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999888776666555433 4799999999999876542211 111111122222233 79999999999
Q ss_pred ChHHHHHHHHH
Q 030192 165 GLYEGLDWLSN 175 (181)
Q Consensus 165 gv~~~~~~i~~ 175 (181)
|+++++.++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 115
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=6e-28 Score=164.23 Aligned_cols=154 Identities=21% Similarity=0.348 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeE--EEEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+.. ..++..... ..+. ...+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887653 233433222 2233 24467999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|++++++++....|+..+..... .++|+++++||+|+..... .+++.+.. +..+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999888887766655433 3799999999999875332 22222222 1224468899999999999999
Q ss_pred HHHHHHh
Q 030192 171 DWLSNNI 177 (181)
Q Consensus 171 ~~i~~~~ 177 (181)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998875
No 116
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=8.2e-28 Score=169.03 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=120.9
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccc-cCccc-eeEEEEEECC--EEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|+|||||++++.+..+... .++.. .....+...+ +.+++||+||+..+..++..+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999887643 34432 2223344444 7899999999999998888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+++++++....|+..+.......++|+++|+||+|+.+. .. .++..+... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 999999999888888777655567999999999998653 11 112221111 12234688999999999999999
Q ss_pred HHHHHhh
Q 030192 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 117
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-30 Score=167.89 Aligned_cols=160 Identities=21% Similarity=0.395 Sum_probs=132.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEE--EE-----------ECCEEEEEEEcCCCCCcccchhhccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VE-----------YKNISFTVWDVGGQDKIRPLWRHYFQ 83 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~--~~-----------~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (181)
+|.+.+|++|+||||++.++..++|... ..|+|+.+.. +- ...+.+++|||+|+++|+.+...+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 5778899999999999999999988755 6677776543 21 13478999999999999999999999
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
.+=+++++||+++.+||.+...|+.++..+....++-|++++||+|+.+...+.+- .....+.+.++|||++||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~---qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSED---QAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHH---HHHHHHHHhCCCeeeeccccC
Confidence 99999999999999999999999999999988899999999999999775432221 112223345567999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030192 164 EGLYEGLDWLSNNIASK 180 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~~ 180 (181)
.||++..+.+++.++++
T Consensus 167 ~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKR 183 (219)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=3.8e-28 Score=168.31 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCcccee-EEEEEE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.||+++|++|+|||||++++.+..+.. ..|+.+.. ...+.. ..+.+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887753 45554432 233333 34678999999999999899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+++..+++....++..++......+.|+++++||+|+..... .++..... +..+++++++|++++.|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999998888865556789999999999864321 11222111 12235789999999999999999
Q ss_pred HHHHHhhh
Q 030192 172 WLSNNIAS 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987754
No 119
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=2.5e-27 Score=160.31 Aligned_cols=151 Identities=23% Similarity=0.436 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEE--EE--CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV--EY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
+||+++|++|+|||||++++.+..+... .++.+...... .. ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887754 66666655433 32 3578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|+++++++.....|+..+..... .++|+++++||+|+.. ....++..+... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99998888888887776665432 4699999999999962 223333333222 245679999999999999999
Q ss_pred HHHH
Q 030192 171 DWLS 174 (181)
Q Consensus 171 ~~i~ 174 (181)
.++.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9885
No 120
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=2.1e-27 Score=162.92 Aligned_cols=157 Identities=20% Similarity=0.355 Sum_probs=118.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..++|+++|++|+|||||++++....+. ...++.+... ..+... .+.+.+||+||++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999977655 3455555332 233443 4678999999999999988899999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
|||+++++++.....|+..+.. ....+.|+++++||+|+.+.... .+..+.+. +....+++++|+++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 9999998888877776654432 22246999999999998754322 22222221 112357889999999999999
Q ss_pred HHHHHHHh
Q 030192 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
|+.+.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 121
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=4.5e-27 Score=163.91 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE-EEE--ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.||+++|++|+|||||++++..+.+.. ..++....+. .+. ...+.+.+||++|++.+......+++.+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999998776653 3444433322 222 234678999999998888777777899999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-H------HHhhhCCCcccCcc-eEEEEccccCCCC
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-E------ITDKLGLHSLRQRH-WYIQSTCATSGEG 165 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~S~~~~~g 165 (181)
+++++++......|...+.... .+.|+++|+||+|+.+..... + ..........+..+ .++++|||++|.|
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 9999999888764444444322 469999999999985421100 0 00000011112223 3689999999999
Q ss_pred hHHHHHHHHHHhh
Q 030192 166 LYEGLDWLSNNIA 178 (181)
Q Consensus 166 v~~~~~~i~~~~~ 178 (181)
++++|+.+.+.+.
T Consensus 161 v~~~f~~l~~~~~ 173 (187)
T cd04129 161 VDDVFEAATRAAL 173 (187)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999997654
No 122
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=1.4e-27 Score=162.09 Aligned_cols=154 Identities=21% Similarity=0.317 Sum_probs=119.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE-EEEEEC--CEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|++|||||||++++.+..+... .++.+... ..+... .+.+++||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998776533 44444222 223333 57899999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
++++++.....++..+........+|+++++||+|+.+.. ..++...... +.+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999998888776554679999999999987632 2222222211 22257899999999999999999
Q ss_pred HHHHh
Q 030192 173 LSNNI 177 (181)
Q Consensus 173 i~~~~ 177 (181)
+.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=1.4e-26 Score=164.83 Aligned_cols=161 Identities=23% Similarity=0.356 Sum_probs=127.6
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEE----ECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.....+||+++|++|||||||++++..+.+. .+.||.+..+.... ...+.+.+||++|++++...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3456799999999999999999988877765 45778877665433 256899999999999999888889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+++|||+++..++..+..|+..+.... .+.|+++++||+|+.+.....+... ..+..++.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988877765432 4789999999999865432222211 112234578999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030192 168 EGLDWLSNNIASK 180 (181)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (181)
+.|.++.+.+...
T Consensus 158 ~~f~~ia~~l~~~ 170 (215)
T PTZ00132 158 KPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 124
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=4.3e-28 Score=157.59 Aligned_cols=162 Identities=20% Similarity=0.330 Sum_probs=125.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccc--ee--EEEEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FN--VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~--~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
.-.+|++++|+.=+|||||+-+++.++|... ..|.- +. ...+......+.||||+|+++|.++-+.|++.+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4568999999999999999999999887632 22221 11 2234446678999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|||+++++||+....|..++..... ..+.+++|+||+|+.++..+ .......+++.-+..++++||+.+.|+.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999887755432 45788999999998654321 111112223334556889999999999999
Q ss_pred HHHHHHHhhhc
Q 030192 170 LDWLSNNIASK 180 (181)
Q Consensus 170 ~~~i~~~~~~~ 180 (181)
|+.+...+.+.
T Consensus 167 Fe~Lt~~MiE~ 177 (218)
T KOG0088|consen 167 FESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=2.7e-26 Score=157.18 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=106.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEECCEEEEEEEcCCCCCccc---------chhhccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWRHYFQNT 85 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~ 85 (181)
.+|+++|++|+|||||++++.+..+... .+|.+.....+...++.+++|||||...... ........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 3799999999999999999998876421 2344455555556778999999999742110 011111236
Q ss_pred cEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 86 QGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 86 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
|++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+.+.....+..+. .+...++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEeccc
Confidence 899999999887653 44445555443321 47999999999999765433331111 1224567999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030192 164 EGLYEGLDWLSNNIA 178 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~ 178 (181)
.|++++++++.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (168)
T cd01897 154 EGVDEVKNKACELLL 168 (168)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998763
No 126
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=5.3e-27 Score=163.42 Aligned_cols=161 Identities=22% Similarity=0.301 Sum_probs=132.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE---EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+..+|.++|.+|+|||+|..+|.++.|.. +.||++..+. .+..+.+.+.++||+|++++..+...+++..|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46799999999999999999999999874 5788775443 3445667899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
|+++++.||+.+..++..+.........|+++|+||+|+.+..... ...+...++.++++++|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~---~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS---EEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccC---HHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 9999999999999999999666665668999999999998742111 1111122455666799999999999999999
Q ss_pred HHHHHhhh
Q 030192 172 WLSNNIAS 179 (181)
Q Consensus 172 ~i~~~~~~ 179 (181)
.+...+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987654
No 127
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=4.9e-26 Score=159.62 Aligned_cols=146 Identities=22% Similarity=0.309 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE-------CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
+||+++|++|+|||||++++.++.+.. +.||++..+. .+.. ..+.+++||++|++++...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988764 4677775442 2322 45789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC------------------CCCCCeEEEEEeCCCCCCCCCHhHHH-hhhCCCcc
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNAMNAAEIT-DKLGLHSL 148 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~~~ 148 (181)
+|+|||++++++++++..|+..+.... ...++|+++|+||+|+.+........ ..-....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999998888776531 12468999999999996542111111 00011123
Q ss_pred cCcceEEEEccccCC
Q 030192 149 RQRHWYIQSTCATSG 163 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~ 163 (181)
.+.+.+.++.+++++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 445556667777753
No 128
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.9e-27 Score=149.23 Aligned_cols=158 Identities=20% Similarity=0.326 Sum_probs=130.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+|-.++|+-|+|||+|+.+|...+|... +.|++..+ ..+++.++++++|||+|+++|+....+|++.+.+.+.
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 357899999999999999999999998855 55777665 3466788999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|||++.+..+..+..|+.+...... ++..+++++||.|+.... ..++. ..++...+..+.++|+++|.|+++
T Consensus 90 vyditrrstynhlsswl~dar~ltn-pnt~i~lignkadle~qrdv~yeea-----k~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLESQRDVTYEEA-----KEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCC-CceEEEEecchhhhhhcccCcHHHH-----HHHHhhcCeEEEEecccccCcHHH
Confidence 9999999999999998887655433 778899999999986543 22222 233444566799999999999999
Q ss_pred HHHHHHHHhhh
Q 030192 169 GLDWLSNNIAS 179 (181)
Q Consensus 169 ~~~~i~~~~~~ 179 (181)
.|-...+++..
T Consensus 164 afle~akkiyq 174 (215)
T KOG0097|consen 164 AFLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHHH
Confidence 99888777654
No 129
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=6.7e-27 Score=159.96 Aligned_cols=163 Identities=17% Similarity=0.251 Sum_probs=129.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE---EEEE-ECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~---~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+|+++||+.++|||+++-.+..+.|+ .+.||.--++ ..+. +..+++.+|||+|+++|+++++..+.++|.+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 5689999999999999999999988887 4577776444 3343 567899999999999999999889999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhh--------hCCCcccCcc-eEEEEccc
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDK--------LGLHSLRQRH-WYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~--------~~~~~~~~~~-~~~~~~S~ 160 (181)
||++.++.++.+....|...+.++. ++.|+|+|++|.|+.+.. ..+.+... .+...+++.+ ..|+||||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999999998888888776 899999999999998432 11111110 0011111222 47999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
++..|++++|+..+.....
T Consensus 162 ~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhCCcHHHHHHHHHHHhc
Confidence 9999999999999987754
No 130
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-27 Score=155.74 Aligned_cols=179 Identities=37% Similarity=0.707 Sum_probs=156.9
Q ss_pred chhHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc--------ccccCccceeEEEEEECCEEEEEEEcCCCCC
Q 030192 2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (181)
=.+.+.+.+..+.+..+.++|+|..++|||||+.+...... ..-.||.+.+..++......+.+||..|++.
T Consensus 2 ~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 2 FTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH
Confidence 34567788888999999999999999999999999854331 2336789999999988899999999999999
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CcccCcc
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQRH 152 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~ 152 (181)
.+.+|..|+..+|++++++|+++++.++.....+.....+-...+.|+++.+||.|+.+..+..++...++. .....++
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence 999999999999999999999999999999998888888777789999999999999998888899888873 3344567
Q ss_pred eEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 153 WYIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 153 ~~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
.++.++||.+|+||++...|++..+.+.
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 8899999999999999999999988653
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=9e-26 Score=154.86 Aligned_cols=156 Identities=26% Similarity=0.251 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCE-EEEEEEcCCCCC----cccchhhc---cccccE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~-~~~i~D~~g~~~----~~~~~~~~---~~~~d~ 87 (181)
+|+++|++|||||||++++.+.... .. .+|.......+...+. .+.+|||||..+ .......+ ++.+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999876542 11 2233333344555555 999999999632 22222333 346999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
+++|+|++++ +++.....|...+.... ...++|+++|+||+|+.+.....+....+... ....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999988 77877776666554432 12468999999999997654433332222111 0244688999999999
Q ss_pred hHHHHHHHHHHh
Q 030192 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~i~~~~ 177 (181)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998754
No 132
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.94 E-value=3.8e-26 Score=145.82 Aligned_cols=164 Identities=47% Similarity=0.803 Sum_probs=153.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECC-EEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.+.++|+++|-.++|||||+..|....+....||.|++...+..++ ..+++||.+|+...+..|..|+.+.|++|||+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVID 94 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVID 94 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEe
Confidence 7889999999999999999999999998888999999999998865 899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
+++...++++.+-+.+++........|+.+..||.|+.-+...+++...+.+..++.+.|++.+||+.+++|+.+-.+|+
T Consensus 95 S~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv 174 (185)
T KOG0074|consen 95 STDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWV 174 (185)
T ss_pred CCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhh
Confidence 99999999999999999888887889999999999998888889999999999999999999999999999999999998
Q ss_pred HHHhh
Q 030192 174 SNNIA 178 (181)
Q Consensus 174 ~~~~~ 178 (181)
.+...
T Consensus 175 ~sn~~ 179 (185)
T KOG0074|consen 175 QSNPE 179 (185)
T ss_pred hcCCC
Confidence 87654
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=2.1e-25 Score=154.34 Aligned_cols=150 Identities=18% Similarity=0.216 Sum_probs=107.4
Q ss_pred EEEEEcCCCCChHHHHhhHhcCC--c-----c-cccC------ccceeE----EEE-----EECCEEEEEEEcCCCCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGE--I-----V-TTIP------TIGFNV----ETV-----EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~--~-----~-~~~~------~~~~~~----~~~-----~~~~~~~~i~D~~g~~~~~ 75 (181)
+|+++|++|+|||||+++|.+.. + . ...+ +.+... ..+ ...++.+++|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998742 1 1 1111 112221 112 3357889999999999999
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccCcc
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRH 152 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 152 (181)
..+..+++.+|++++|+|+++..+.+....++. ... .++|+++|+||+|+.+... .+++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999988766655544432 222 4689999999999865321 12333333322 1
Q ss_pred eEEEEccccCCCChHHHHHHHHHHhh
Q 030192 153 WYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 153 ~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
..++++||++|.|++++++++.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 24889999999999999999988764
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=4.1e-25 Score=150.59 Aligned_cols=152 Identities=23% Similarity=0.167 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCC---ccc-c--cCccceeEEEEEEC-CEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGE---IVT-T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~---~~~-~--~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+.|+++|++|+|||||+++|.+.. +.. . ..|.+..+..+... +..+.+|||||++++......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 468999999999999999998643 221 1 22344444444444 6789999999999887766777889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
|+|+++.... .....+. .+... ..+|+++++||+|+.+... .+++.+.+.... ..+.+++++|+++|.|+
T Consensus 81 V~d~~~~~~~-~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMP-QTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccH-hHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCCcCH
Confidence 9999763211 1111111 11111 1248999999999975421 122222222110 13457999999999999
Q ss_pred HHHHHHHHH
Q 030192 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~i~~ 175 (181)
+++++.+..
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998754
No 135
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=9.9e-27 Score=147.27 Aligned_cols=150 Identities=19% Similarity=0.439 Sum_probs=123.5
Q ss_pred EEEcCCCCChHHHHhhHhcCCccc--ccCccceeEEE----EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 21 LMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 21 ~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+++|++++|||+|+-++..+.|.. -.+|.|+.+.. +...++++++|||+|+++|+.....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999999998777653 36677777643 445678999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
.+..||.+...|+.++-.... ....+.+++||+|+.++ +..+.+.+.+++ |+.++|+++|.|++..
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHH
Confidence 999999999999887755432 45778899999999653 344556665555 5889999999999999
Q ss_pred HHHHHHHhhh
Q 030192 170 LDWLSNNIAS 179 (181)
Q Consensus 170 ~~~i~~~~~~ 179 (181)
|-.|.+.+.+
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=6.6e-25 Score=154.97 Aligned_cols=153 Identities=21% Similarity=0.215 Sum_probs=107.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc---ccCccceeEEEEEECC-EEEEEEEcCCCCCc---------ccchhhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKN-ISFTVWDVGGQDKI---------RPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~---------~~~~~~~ 81 (181)
+..++|+++|++|||||||++++.+..+.. ..+|.......+...+ ..+.+|||||..+. ...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 446899999999999999999999876431 2344444444455444 38999999997321 1111 22
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+..+|++++|+|++++.+......+. ..+......++|+++|+||+|+.+..... ..+.....+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcC
Confidence 46799999999999887766554333 33333333468999999999987643222 1122334568899999
Q ss_pred CCCChHHHHHHHHHHh
Q 030192 162 SGEGLYEGLDWLSNNI 177 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~ 177 (181)
++.|++++++++.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
No 137
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=1e-25 Score=158.79 Aligned_cols=160 Identities=23% Similarity=0.318 Sum_probs=105.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCC-----------CCCcccchhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~ 82 (181)
...++|+++|++|+|||||++++.+..+.. ..|+.+.....+... .+.+||||| +++++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999877542 334333333333333 689999999 344555554454
Q ss_pred c----cccEEEEEEECCCcccHH---------HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCC-
Q 030192 83 Q----NTQGLIFVVDSNDRDRVV---------EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH- 146 (181)
Q Consensus 83 ~----~~d~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~- 146 (181)
. .++++++|+|.++..... .....+...+.. .++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 467888899886432210 011112222222 479999999999986543 334555555542
Q ss_pred cccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
.++..+.+++++||++| |++++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 12222346899999999 9999999999987653
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=1.8e-24 Score=148.09 Aligned_cols=154 Identities=23% Similarity=0.213 Sum_probs=108.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEE---CCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.|+++|++|+|||||+++|....+... .++.......+.. .+..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876543 2233333344444 3678999999999988888888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---hhCCCc--ccCcceEEEEccccCCCChH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD---KLGLHS--LRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~S~~~~~gv~ 167 (181)
|+++....+.. ..+.. +.. .++|+++|+||+|+.... .+.+.. .+.... .....++++++|+++|.|++
T Consensus 82 d~~~~~~~~~~-~~~~~-~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTI-EAIKL-AKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHH-HHHHH-HHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 99875432221 11222 222 468999999999987532 122221 111111 11235679999999999999
Q ss_pred HHHHHHHHHhh
Q 030192 168 EGLDWLSNNIA 178 (181)
Q Consensus 168 ~~~~~i~~~~~ 178 (181)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 139
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=2.9e-24 Score=160.92 Aligned_cols=158 Identities=23% Similarity=0.224 Sum_probs=112.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEE-CCEEEEEEEcCCCCC-------cccchhhcccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d 86 (181)
..|+++|.||||||||++++.+.+.. .. .+|.......+.. +..++.+||+||..+ ....+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47999999999999999999986533 22 3455555666666 557899999999632 1122333456799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcccCcceEEEEccccCCC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
++++|+|+++.++++....|...+.... ...++|+++|+||+|+.+.....+ ..+.. .+..+++++++||+++.
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 9999999998878877777666554432 234789999999999876432221 11111 11223578999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030192 165 GLYEGLDWLSNNIAS 179 (181)
Q Consensus 165 gv~~~~~~i~~~~~~ 179 (181)
|++++++++.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 140
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=6.9e-24 Score=159.72 Aligned_cols=157 Identities=15% Similarity=0.222 Sum_probs=109.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccccc----CccceeEEEEEECCEEEEEEEcCCCCC-cccc-------hhhc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDK-IRPL-------WRHY 81 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~~ 81 (181)
+.+..+|+++|.+|+|||||+|+|.+..+.... +|.......+..++..+.+|||||..+ +..+ ...+
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 356679999999999999999999988765322 233333445666788999999999743 2222 1124
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++.+.+... .....++++||+
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEecc
Confidence 678999999999754 444454555554443 34677889999998653 333444433211 112468999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030192 162 SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~ 179 (181)
+|.|++++++++.+.+.+
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999999987654
No 141
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=1.2e-23 Score=146.49 Aligned_cols=155 Identities=24% Similarity=0.229 Sum_probs=112.9
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCccccc-------------------CccceeEEEEEECCEEEEEEEcCCCCCcccchh
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (181)
+|+++|.+|+|||||++++.+....... .+.......+......+.+||+||..++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887654321 122333444566788999999999998888888
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCcc-------
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA----EITDKLGLHSL------- 148 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~------- 148 (181)
.+++.+|++++|+|+..+.+... ...+.. +.. .+.|+++++||+|+..+.... ++.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~-~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRI-ARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHH-HHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987654322 222222 222 479999999999998643322 23333332211
Q ss_pred --cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 149 --~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
.....+++++|+++|.|+++++.++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 235678999999999999999999998764
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=1e-23 Score=142.27 Aligned_cols=152 Identities=22% Similarity=0.296 Sum_probs=112.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEE--EEECC--EEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.+||+++|++|+|||||++++.+..+. ...++.+..... +...+ +.+.+||+||+.++...+..+.++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999988854 334555544433 45556 7899999999999988888888999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 92 VDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|.... .++.... .+...+..... .+.|+++++||+|+......++....+... ...+++++||++|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHH
Confidence 998766 6665555 33333333222 378999999999997654333333333222 1235889999999999999
Q ss_pred HHHH
Q 030192 170 LDWL 173 (181)
Q Consensus 170 ~~~i 173 (181)
++++
T Consensus 156 ~~~l 159 (161)
T TIGR00231 156 FKIV 159 (161)
T ss_pred HHHh
Confidence 9876
No 143
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=8.9e-24 Score=165.75 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=109.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccc--eeEEEEEECCEEEEEEEcCCCCC----------cccc-hhh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~ 80 (181)
..++|+++|.+|+|||||+|+|++.... +..++++ .....+...+..+.+|||||..+ +... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753 3333322 22344566778899999999532 2111 123
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+++..+.+... ++..... .++|+|+|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 567899999999999887776553 3333332 47899999999999754322222222111111112346889999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
++|.|++++|+.+.+.+.+
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=2.2e-23 Score=140.96 Aligned_cols=143 Identities=21% Similarity=0.202 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~ 85 (181)
++|+++|++|+|||||++++.+.... ...+ +.......+...+.++.+|||||..++... ...++..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987643 2222 222333445567789999999997655422 22356789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
|++++|+|++++.+......+.. ..++|+++++||+|+.+.... .....+.+++++|++++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998777665544332 257999999999998764332 1233455799999999999
Q ss_pred hHHHHHHHHHHh
Q 030192 166 LYEGLDWLSNNI 177 (181)
Q Consensus 166 v~~~~~~i~~~~ 177 (181)
++++++++.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 145
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=7.4e-24 Score=155.43 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccc--cC-ccceeEE-EEEECCEEEEEEEcCCCCCccc--------chhhcccccc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTT--IP-TIGFNVE-TVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~-~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 86 (181)
+|+++|.||+|||||+|+|.+.+.... .| |+..... .....+..+.+|||||...... ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999876422 22 2222222 2234567899999999654321 1334568899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh-CCCcccCcceEEEEccccCCCC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL-GLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~g 165 (181)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+ .... -.+++++||++|.|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~----~~~v~~iSA~~g~g 151 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILED----FKDIVPISALTGDN 151 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcC----CCceEEEecCCCCC
Confidence 999999998766553 333344333 468999999999987533222211111 1111 11688999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++++++.+.+.+.+
T Consensus 152 i~~L~~~l~~~l~~ 165 (270)
T TIGR00436 152 TSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987754
No 146
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.2e-24 Score=145.13 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=91.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCC-----CcccchhhccccccEEEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d 93 (181)
||+++|++|+|||||++++.+..+. ..+|.+..+ .. .+|||||.. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 7999999999999999999987652 334433322 22 789999972 2333323 4689999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHH
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
++++.++.. . .|.... ..|+++|+||+|+.+.. ..++..+..... ...+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~-~-~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP-P-GFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC-h-hHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence 999887644 2 233321 24899999999986532 222222211111 1126889999999999999998
Q ss_pred HH
Q 030192 173 LS 174 (181)
Q Consensus 173 i~ 174 (181)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.3e-23 Score=158.48 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=107.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-c--ccCccceeEEEEEE-CCEEEEEEEcCCCCC---------cccchhhcc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYF 82 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~---------~~~~~~~~~ 82 (181)
..++|+++|.+|+|||||+|+|.+.... . ..+|.+.....+.. .+..+.+|||+|..+ +...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4589999999999999999999997643 2 24566666666666 567999999999722 22222 236
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.++|++++|+|++++.+...... +..++......++|+++|+||+|+.+....... .. ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~---~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRIERL---EE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhHHHH---Hh------CCCCEEEEEccC
Confidence 78999999999998877655533 333344333357899999999998753222111 11 112478999999
Q ss_pred CCChHHHHHHHHHH
Q 030192 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~gv~~~~~~i~~~ 176 (181)
|.|++++++.+.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=4.7e-24 Score=147.01 Aligned_cols=152 Identities=22% Similarity=0.198 Sum_probs=105.1
Q ss_pred EEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEEC-CEEEEEEEcCCCCC----cccc---hhhccccccEEEE
Q 030192 22 MVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 22 i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~---~~~~~~~~d~~i~ 90 (181)
++|++|||||||++++.+.... .. .+|.......+... +..+.+|||||... .+.. ....++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999988641 11 23344444445566 78999999999632 2222 2334678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHHcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
|+|++++ .++.....+...+..... ..++|+++|+||+|+.......+.. ........+.+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 456666666655544322 1479999999999997654333321 111122234568899
Q ss_pred cccCCCChHHHHHHHHHH
Q 030192 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~ 176 (181)
|++++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 149
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.9e-23 Score=141.28 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=100.9
Q ss_pred EEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCccc--------chhhccccccEE
Q 030192 21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (181)
Q Consensus 21 ~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d~~ 88 (181)
+++|.+|+|||||++++.+.... +..+ |...........+..+.+|||||...+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987532 2222 23334455666788999999999877543 334566789999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
++|+|..+..+... ..+...+.. .+.|+++++||+|+.+.....+....+.. .+++++|+++|.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence 99999976543322 223333333 36999999999999765332111111111 1478999999999999
Q ss_pred HHHHHHHHh
Q 030192 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~~ 177 (181)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 150
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=6.7e-24 Score=141.75 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCc------ccchhhcc--cccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ 86 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~~d 86 (181)
++|+++|.||+|||||+|+|++.+.. ...| |.......+...+..+.++|+||--.. ......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998854 3334 566666778888999999999993221 22233343 5899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
++++|+|+++. ++......++.. .++|+++++||+|..... ..+.+.+.++. +++.+||++
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 99999999763 333333444443 479999999999987543 34566666654 699999999
Q ss_pred CCChHHHHHHH
Q 030192 163 GEGLYEGLDWL 173 (181)
Q Consensus 163 ~~gv~~~~~~i 173 (181)
+.|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999865
No 151
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=1e-23 Score=155.05 Aligned_cols=123 Identities=21% Similarity=0.377 Sum_probs=102.0
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE--EEEE---------------CCEEEEEEEcCCCC
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---------------KNISFTVWDVGGQD 72 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~--~~~~---------------~~~~~~i~D~~g~~ 72 (181)
..++...+||+++|+.|||||||+++|.++.+.. +.+|++..+. .+.. ..+.+++||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 3456678999999999999999999999988764 4678876542 2332 24789999999999
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~Dl~~~ 133 (181)
+|..++..+++++|++|+|||+++++++..+..|+..+..... ..++|+++|+||+|+.+.
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999998887765421 135899999999999653
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=6e-23 Score=159.02 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=108.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccCccc--eeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (181)
+..++|+++|++|+|||||+|+|.+... .+..|.++ .....+...+..+.+|||||..++... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5779999999999999999999998753 33344333 334456678889999999998655432 23567
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.+.... |+..... .++|+++|+||+|+.+. ..+++.. ..+.+++++|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence 889999999999988776554 4444322 46899999999998654 2222222 1233578999998
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
.|++++++.+.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6999999998887754
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.3e-23 Score=163.37 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=106.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc--ccCcc--ceeEEEEEECCEEEEEEEcCCCCC--------cccchhhccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTI--GFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (181)
...+|+++|.+|+|||||+|++.+..... ..|.. ......+...+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 34789999999999999999999876532 23322 223344556778899999999763 2334556778
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+..... +........ + + ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence 9999999999988765432 333344433 4799999999999864321 111111111 1 1 2358999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030192 164 EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~ 179 (181)
.|++++++++.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
No 154
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=5.5e-24 Score=142.44 Aligned_cols=150 Identities=27% Similarity=0.428 Sum_probs=112.6
Q ss_pred EEcCCCCChHHHHhhHhcCCc-ccc-cCccceeEEEEEEC----CEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192 22 MVGLDAAGKTTILYKLKLGEI-VTT-IPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 22 i~G~~~~GKSsli~~l~~~~~-~~~-~~~~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
++|++|+|||||++++.+... ... .++. ......... ...+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 332 3333 444444333 678999999999888887788889999999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
++.+......++..........++|+++++||+|+.......... ..........++++++|++++.|++++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 988888888774444444455789999999999987654333321 00111123456799999999999999999875
No 155
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=2.1e-23 Score=156.16 Aligned_cols=156 Identities=24% Similarity=0.240 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCCCCc----ccc---hhhcccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPL---WRHYFQNTQ 86 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~----~~~---~~~~~~~~d 86 (181)
..|+++|.||||||||++++.+.+.. .. .+|...+...+...+ ..+.+||+||..+. ..+ +..++..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 58999999999999999999987532 11 234445555566665 89999999996422 122 223345799
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
++++|+|+++. ++++....|..++... ....++|+++|+||+|+.+....+++.+.+.. ..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999876 5666666555544332 12347899999999999765433333333221 1235789999999
Q ss_pred CCChHHHHHHHHHHh
Q 030192 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~ 177 (181)
+.|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.1e-23 Score=146.20 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhc--CCccccc-------------Cccc----eeEEEEEECCEEEEEEEcCCCCCcccch
Q 030192 18 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-------------PTIG----FNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~--~~~~~~~-------------~~~~----~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (181)
.+|+++|++|+|||||+++|.+ +.+.... ++.+ .....+......+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999987 3333211 1122 2234566788999999999999999999
Q ss_pred hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC-CC-cccCcce
Q 030192 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LH-SLRQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~-~~-~~~~~~~ 153 (181)
..+++.+|++++|+|+++.. ......++..... .++|+++++||+|+.+... .+++...+. .. ...+.++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998632 2222333333322 4689999999999965322 222233221 11 1133467
Q ss_pred EEEEccccCCCChH
Q 030192 154 YIQSTCATSGEGLY 167 (181)
Q Consensus 154 ~~~~~S~~~~~gv~ 167 (181)
+++++||++|.|+.
T Consensus 158 ~iv~~Sa~~g~~~~ 171 (194)
T cd01891 158 PVLYASAKNGWASL 171 (194)
T ss_pred CEEEeehhcccccc
Confidence 89999999998764
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=5e-23 Score=160.34 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=109.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccch-----------hh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLW-----------RH 80 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~ 80 (181)
..++|+++|.+|+|||||+|++.+.... ...+ |.......+...+..+.+|||||..+..... ..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987643 2222 2222234455677789999999976544321 23
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+++.+|++++|+|++++.+.+.. ..+..... .++|+++|+||+|+. +....+++...+......-...+++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 56889999999999877665443 22222222 478999999999997 3222333333332221122346799999
Q ss_pred ccCCCChHHHHHHHHHHhh
Q 030192 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~ 178 (181)
|++|.|++++|+++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988654
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=2e-23 Score=146.06 Aligned_cols=156 Identities=21% Similarity=0.122 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC----Ccc----c--ccCccceeEEEEEE--------------CCEEEEEEEcCCCCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG----EIV----T--TIPTIGFNVETVEY--------------KNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~----~~~----~--~~~~~~~~~~~~~~--------------~~~~~~i~D~~g~~~ 73 (181)
++|+++|++|+|||||+++|... .+. + ...|.+..+..+.. .+..+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1 12344444333333 277999999999966
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCc--
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHS-- 147 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~-- 147 (181)
+........+.+|++++|+|+.+.........+. +... .++|+++++||+|+..... .+++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444456789999999998654433322222 1111 2579999999999875332 222222211110
Q ss_pred ccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
....+++++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1124568999999999999999999988763
No 159
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=4.7e-23 Score=160.31 Aligned_cols=146 Identities=21% Similarity=0.286 Sum_probs=108.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc--ccccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (181)
+..++|+++|.+|+|||||+|+|.+... .+..+ |.......+...+..+.+|||||..++... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999998764 23333 333444566678889999999998654332 23356
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|++++.+..... .|.. ..++|+++|+||+|+.+..... ...+.+++++|+++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 8899999999999887766433 3332 2578999999999997543221 11234688999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030192 163 GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~ 178 (181)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=9e-23 Score=138.25 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=102.0
Q ss_pred EEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc------hhhccc--cccEEEE
Q 030192 22 MVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL------WRHYFQ--NTQGLIF 90 (181)
Q Consensus 22 i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~d~~i~ 90 (181)
++|++|+|||||++++.+.... ...+ |.......+...+..+.+|||||...+... +..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999987633 2233 444445566677789999999998766542 444554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
|+|+.+++.. ..++..+.. .++|+++++||+|+.+..........+ .+..+.+++++|+++|.|+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 9999875443 233333322 368999999999997643222111111 11123468899999999999999
Q ss_pred HHHHHHhh
Q 030192 171 DWLSNNIA 178 (181)
Q Consensus 171 ~~i~~~~~ 178 (181)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988754
No 161
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=4.6e-23 Score=147.02 Aligned_cols=163 Identities=28% Similarity=0.377 Sum_probs=121.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccceeEEEEEE--C--CEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++|+++|++|+|||||+++|.++.+... .++.+..+..... . .+.+.+|||+|+++++..+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998854 5565544433222 2 57899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhh----------hCCCccc-CcceEEEEcc
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDK----------LGLHSLR-QRHWYIQSTC 159 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~----------~~~~~~~-~~~~~~~~~S 159 (181)
+|.++..+..+....|...+......+.|+++++||+|+....... .+.+. ....... .....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 9999877776666666666555443469999999999998753211 11111 0000001 1122378999
Q ss_pred cc--CCCChHHHHHHHHHHhhh
Q 030192 160 AT--SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 160 ~~--~~~gv~~~~~~i~~~~~~ 179 (181)
++ ++.+++++|..+...+.+
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHH
Confidence 99 999999999999988753
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=3.3e-22 Score=137.20 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=103.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCccc-----------chhhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~~~ 81 (181)
.++|+++|++|+|||||++++.+.... ...+ +.......+...+..+.+||+||..+... ....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999887632 2222 22222234555677899999999654311 01234
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEcc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+..+|++++|+|++++.+.... ..+. .... .+.|+++++||+|+.+. ...+++........-.....+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~-~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAG-LILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHH-HHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 5689999999999887665433 2222 2222 36899999999998765 23333333332211111235799999
Q ss_pred ccCCCChHHHHHHHHHH
Q 030192 160 ATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~ 176 (181)
++++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999988764
No 163
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=1e-22 Score=143.49 Aligned_cols=157 Identities=27% Similarity=0.402 Sum_probs=115.1
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccc-cEEEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 93 (181)
+|+++|++|||||||+++|..+.+....+++......+.. .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876555554444433332 367899999999999998888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------C------------
Q 030192 94 SNDR-DRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLG-------------L------------ 145 (181)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~-------------~------------ 145 (181)
+.+. .++.....++.+++.... ..++|+++++||+|+......+.+++.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 677777777776654322 25799999999999875433222221110 0
Q ss_pred -------C-ccc--CcceEEEEccccCCC-ChHHHHHHHHH
Q 030192 146 -------H-SLR--QRHWYIQSTCATSGE-GLYEGLDWLSN 175 (181)
Q Consensus 146 -------~-~~~--~~~~~~~~~S~~~~~-gv~~~~~~i~~ 175 (181)
. .+. ...+.+.++|++.+. |++...+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 011 246788999999876 68888888754
No 164
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=7.1e-23 Score=143.65 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=105.9
Q ss_pred HHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc-ccccCccceeEE-EEEECCEEEEEEEcCCCC----------Cccc
Q 030192 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQD----------KIRP 76 (181)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~----------~~~~ 76 (181)
+++.+.....+|+++|++|+|||||++++.+..+ ....++.+.+.. .....+..+.+|||||.. ++..
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 3455667889999999999999999999998763 333444332221 111124789999999953 2223
Q ss_pred chhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcce
Q 030192 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
Q Consensus 77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
....+++ ..+++++|+|.+.+.+... .++...+.. .+.|+++++||+|+.+....++....+. ..+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~ 169 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDD 169 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCC
Confidence 3334444 3468888999876544322 222233332 4688999999999876433222221111 11111134
Q ss_pred EEEEccccCCCChHHHHHHHHHHhhh
Q 030192 154 YIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 154 ~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
.++++|++++.|++++++.+.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 68899999999999999999988765
No 165
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=9.5e-23 Score=158.30 Aligned_cols=158 Identities=26% Similarity=0.294 Sum_probs=109.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCC----cccc---hhhcccccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDK----IRPL---WRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~d 86 (181)
..+|+++|.||||||||+|+|.+.+.. .. .+|...+...+...+..+.+||+||... ...+ ...++..+|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 458999999999999999999987643 22 3455666667778888999999999532 1111 233457799
Q ss_pred EEEEEEECCCc----ccHHHHHHHHHHHHcCC----------CCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcccCc
Q 030192 87 GLIFVVDSNDR----DRVVEARDELHRMLNED----------ELRDAVLLVFANKQDLPNAMNAAEI-TDKLGLHSLRQR 151 (181)
Q Consensus 87 ~~i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~piivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~ 151 (181)
++++|+|+++. +.+.....+..++.... ...++|+++|+||+|+.+.....+. ...+ ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence 99999999753 34444433332332211 2346899999999999754332222 2121 223
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 152 HWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 152 ~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+++++++||+++.|+++++.++.+.+.+
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999887753
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=4.8e-22 Score=153.23 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCE-EEEEEEcCCCCCc--ccch------hhccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPLW------RHYFQNT 85 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~-~~~i~D~~g~~~~--~~~~------~~~~~~~ 85 (181)
.+|+++|.+|+|||||+|+|.+.... .. ..|.......+...+. .+.+|||+|..+. ...+ ....+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987643 12 3455555555655544 8899999997332 1122 2235789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE-EEEccccCCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGE 164 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (181)
|++++|+|++++.+...... +..++......++|+++|+||+|+.+... ...... . .+.+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 99999999998876655432 22233332224789999999999864321 111111 0 1112 4689999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030192 165 GLYEGLDWLSNNIAS 179 (181)
Q Consensus 165 gv~~~~~~i~~~~~~ 179 (181)
|++++++++.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
No 167
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=4.9e-22 Score=152.46 Aligned_cols=153 Identities=25% Similarity=0.279 Sum_probs=106.9
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEEC-CEEEEEEEcCCCCC----cccchhh---ccccccE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWRH---YFQNTQG 87 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~~---~~~~~d~ 87 (181)
.|+++|.||||||||++++.+.+.. .. .+|...+...+... ...+.+||+||... ...+... ++..+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987643 22 33555555555555 68899999999632 2222233 3456999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 88 LIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+++|+|+++. ++++....+...+... ....++|+++|+||+|+.+.. ..+++.+.+. .+++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999864 5566555554444332 123478999999999985431 1223333322 3688999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
+.|++++++++.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 312 GQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887754
No 168
>PTZ00099 rab6; Provisional
Probab=99.89 E-value=5.6e-23 Score=141.61 Aligned_cols=130 Identities=20% Similarity=0.371 Sum_probs=102.0
Q ss_pred cccCccceeEEE--E--EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC
Q 030192 44 TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
Q Consensus 44 ~~~~~~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (181)
.+.||.+..+.. + ....+.+.+|||+|++++...+..+++.+|++++|||++++++++....|+..+..... .++
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCC
Confidence 356788866643 2 23468999999999999999999999999999999999999999999888887766532 578
Q ss_pred eEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 120 VLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 120 piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
|+++|+||+|+.+.. ..++... ..+..++.++++||++|.|++++|.++.+.+.+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~-----~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQ-----KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999996432 2222211 122234568999999999999999999988765
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=7.4e-22 Score=134.48 Aligned_cols=154 Identities=20% Similarity=0.175 Sum_probs=103.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccccc---Ccc-ceeEEEEEECCEEEEEEEcCCCCCccc--------chhhccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTI-GFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (181)
+..+|+++|++|+|||||++++.+....... ++. ......+...+..+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999987643211 111 112223444668899999999754332 2334567
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|++++|+|++++. .....++...+.. .+.|+++++||+|+.. .....+....+... ....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence 899999999998762 2233334344433 3689999999999873 33333333333221 1234688999999
Q ss_pred CCChHHHHHHHHHHh
Q 030192 163 GEGLYEGLDWLSNNI 177 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~ 177 (181)
+.|++++++.+.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999987653
No 170
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=2.8e-22 Score=139.82 Aligned_cols=158 Identities=23% Similarity=0.204 Sum_probs=112.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc---------------------cccCccceeEEEEE--ECCEEEEEEEcCCCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVE--YKNISFTVWDVGGQD 72 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~ 72 (181)
+.++|+++|+.++|||||+++|....-. ...-|.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999753210 01224555666777 789999999999999
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhh-CCCcc
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKL-GLHSL 148 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~-~~~~~ 148 (181)
+|.......+..+|++++|+|+.+.-.. ...+.+..... .++|+++++||+|+.... ..+++...+ .....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 9988888888999999999999765332 22333333333 478899999999988321 122222222 11111
Q ss_pred cC-cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 149 RQ-RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~-~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
.. ..++++++||++|.|++++++.+.+.+.
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 3578999999999999999999988764
No 171
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-24 Score=142.61 Aligned_cols=155 Identities=17% Similarity=0.341 Sum_probs=130.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEE----EEEECCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
+..+|++++|..++||||+|.+++.+-|.. +..+++..+. .+..+++...+||++|+++|..+...|++.+.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 467899999999999999999999988874 4567776542 34557788999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+||+.++..||+....|+..+..+. ..+|.++|-||+|+.+. .+.+-+...+++. ++.+|++...
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R--------lyRtSvked~ 167 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR--------LYRTSVKEDF 167 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh--------hhhhhhhhhh
Confidence 9999999999999999999987754 47999999999999763 2344455555554 5579999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030192 165 GLYEGLDWLSNNIAS 179 (181)
Q Consensus 165 gv~~~~~~i~~~~~~ 179 (181)
|+..+|.++..++..
T Consensus 168 NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999987754
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.9e-22 Score=136.79 Aligned_cols=141 Identities=21% Similarity=0.202 Sum_probs=93.6
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCC----cccchhhccccccEEEEEEEC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK----IRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+|+++|++|+|||||+|++.+.... ..++.+. ..... .+|||||... +.......++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998865421 1222222 22111 3799999632 222223346889999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
++.++.. ..++... . .++|+++++||+|+.+. ..+.+.+...... ...+++++||++|.|++++|+++.
T Consensus 75 ~~~~s~~--~~~~~~~-~----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI-G----VSKRQIAVISKTDMPDA-DVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc-c----CCCCeEEEEEccccCcc-cHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence 9876652 2233332 1 36789999999998653 2333332221111 114799999999999999999998
Q ss_pred HHhh
Q 030192 175 NNIA 178 (181)
Q Consensus 175 ~~~~ 178 (181)
+.+.
T Consensus 144 ~~~~ 147 (158)
T PRK15467 144 SLTK 147 (158)
T ss_pred Hhch
Confidence 8764
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=1.7e-22 Score=139.85 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=96.6
Q ss_pred HHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc-ccccCccceeE--EEEEECCEEEEEEEcCCCCC----------cc
Q 030192 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IR 75 (181)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~ 75 (181)
+.+.++.+..+|+++|++|+|||||+|++.+..+ ....++.+.+. ..+... ..+.+|||||... +.
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHH
Confidence 3567778999999999999999999999998763 23333333221 112222 3699999999532 22
Q ss_pred cchhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcc
Q 030192 76 PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSL 148 (181)
Q Consensus 76 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~ 148 (181)
.....+++ .++++++|+|++++-+.... .+...+.. .++|+++++||+|+.++.. .+++...+...
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-- 161 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-- 161 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc--
Confidence 22334444 46899999999865443333 22233333 4689999999999875422 22333333321
Q ss_pred cCcceEEEEccccCCCChH
Q 030192 149 RQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~gv~ 167 (181)
...+.++++||++|+|++
T Consensus 162 -~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 -ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred -cCCCceEEEECCCCCCCC
Confidence 223479999999999974
No 174
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=1e-21 Score=145.82 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=104.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccccc--C-ccceeEEE-EEECCEEEEEEEcCCCCCcc--------cchhhccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P-TIGFNVET-VEYKNISFTVWDVGGQDKIR--------PLWRHYFQ 83 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 83 (181)
+.-.|+++|++|||||||+|++.+.+..... | |....... ...++..+.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999998764322 2 22222222 23355799999999965432 22334567
Q ss_pred cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+..+.+... .....++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999873 22333444444442 46899999999999732 2222222222211 0123688999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
+.|++++++++.+.+.+
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999887643
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=4.8e-22 Score=140.18 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc---c---ccCccceeEEEEEE---------------------------CC----
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV---T---TIPTIGFNVETVEY---------------------------KN---- 60 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~---~---~~~~~~~~~~~~~~---------------------------~~---- 60 (181)
++|+++|+.|+|||||+..+.+.... . ...+....+..+.. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999654211 0 01111111111111 02
Q ss_pred --EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030192 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (181)
Q Consensus 61 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~- 137 (181)
..+.+|||||++++...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 67999999999988887777788899999999998632111112222222111 235799999999997532221
Q ss_pred ---HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
++.+.+.. .....++++++||++|.|++++++.+.+.+.+
T Consensus 158 ~~~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 22221111 11234578999999999999999999887654
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.9e-21 Score=151.65 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=108.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccce--eEEEEEECCEEEEEEEcCCCCCcccc-----------hh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGF--NVETVEYKNISFTVWDVGGQDKIRPL-----------WR 79 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 79 (181)
...++|+++|.+|+|||||+|++++.... ...+.... ....+...+..+.+|||||..+.... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999987643 22332222 22334567788999999996432221 12
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcc
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
.+++.+|++++|+|++++.+.+.. ..+ ..+.. .++|+++++||+|+.+....+++...+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~-~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIA-GLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 356789999999999887665443 222 22222 4689999999999975433334443332221122345799999
Q ss_pred ccCCCChHHHHHHHHHHhh
Q 030192 160 ATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~~~~ 178 (181)
|++|.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887554
No 177
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=6.9e-22 Score=158.02 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=110.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCC-------ccc-ccC------ccceeE----EEEEE-----CCEEEEEEEcCCCCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT-TIP------TIGFNV----ETVEY-----KNISFTVWDVGGQDK 73 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~-~~~------~~~~~~----~~~~~-----~~~~~~i~D~~g~~~ 73 (181)
..+++++|+.++|||||+++|+... +.. ... ..++++ ..+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111 111 123222 22322 247899999999999
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcccC
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQ 150 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~ 150 (181)
|...+..+++.+|++++|+|+++..+.+....|+... . .++|+++++||+|+.+... .+++.+.++..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999876666555554333 2 3689999999999865321 12343333322
Q ss_pred cceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 151 RHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 151 ~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
...++++||++|.|++++|+.+.+.+..
T Consensus 154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 -ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1247899999999999999999887653
No 178
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=2e-21 Score=131.18 Aligned_cols=150 Identities=25% Similarity=0.230 Sum_probs=104.5
Q ss_pred EEcCCCCChHHHHhhHhcCCcccc--cC--ccceeEEEEEEC-CEEEEEEEcCCCCCccc-------chhhccccccEEE
Q 030192 22 MVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYK-NISFTVWDVGGQDKIRP-------LWRHYFQNTQGLI 89 (181)
Q Consensus 22 i~G~~~~GKSsli~~l~~~~~~~~--~~--~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i 89 (181)
++|++|||||||++++.+...... .+ +........... ...+.+||+||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998765421 11 222222333333 67899999999766543 3344678899999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+|+|..+........ +...... .+.|+++++||+|+.......................+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877665554 2322222 57999999999998876544443221222223345668999999999999999
Q ss_pred HHHHHHH
Q 030192 170 LDWLSNN 176 (181)
Q Consensus 170 ~~~i~~~ 176 (181)
+.++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1e-21 Score=152.97 Aligned_cols=148 Identities=22% Similarity=0.281 Sum_probs=105.1
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCC--------Ccccchhhcccccc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d 86 (181)
+|+++|.+|+|||||+|++.+.... ...| |.......+...+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 2333 3334455667788899999999963 23344566778999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++++|+|+.+..+. ....+..+++. .++|+++|+||+|+.+..........++.. +++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~--~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTP--EDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCH--HHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCCh
Confidence 99999999764332 22333444443 468999999999987543221111122221 4789999999999
Q ss_pred HHHHHHHHHHhh
Q 030192 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~~~ 178 (181)
+++++.+.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 180
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=1.2e-22 Score=131.51 Aligned_cols=109 Identities=25% Similarity=0.452 Sum_probs=79.9
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc---cccC----ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
||+++|++|||||||+++|.+..+. ...+ +.......+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988865 1111 22222222333444699999999998888877778999999999
Q ss_pred EECCCcccHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCC
Q 030192 92 VDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piivv~nK~D 129 (181)
||++++++++.+.++ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887554 3333321 24699999999998
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.2e-21 Score=152.84 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCC--------cccchhhccccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~ 85 (181)
.+|+++|.+|+|||||+|+|.+.... ...+ |.......+...+..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987742 2233 33344556677789999999999876 223345567899
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
|++++|+|+.+..+. ...++..++.. .++|+++|+||+|+.+.. ....+..... +. .++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-LG----EPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-CC----CCEEEEeeCCCC
Confidence 999999999765333 22233333333 378999999999975422 1222211111 10 367899999999
Q ss_pred hHHHHHHHHH
Q 030192 166 LYEGLDWLSN 175 (181)
Q Consensus 166 v~~~~~~i~~ 175 (181)
++++++.+..
T Consensus 150 v~~l~~~I~~ 159 (435)
T PRK00093 150 IGDLLDAILE 159 (435)
T ss_pred HHHHHHHHHh
Confidence 9999999987
No 182
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=4.9e-22 Score=142.71 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=111.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC-ccceeE-EEEEECCEEEEEEEcCCCCC--------cccchhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNV-ETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 82 (181)
.+.-.|+++|.||+|||||+|++++.+.. +..| |+-... ..+..++..+.++||||--. ..+.....+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45567999999999999999999999865 3322 322222 33455788999999999322 222344556
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEcccc
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
..+|++++|+|++.... .-.+++.+.++. .+.|+++++||+|...+.. ...+.+.+....-. ..++++||+
T Consensus 84 ~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f---~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF---KEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc---ceEEEeecc
Confidence 78999999999976433 345555555554 4689999999999887765 33333333222111 168999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030192 162 SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~~ 179 (181)
+|.|++.+.+.+...+.+
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999988765
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=2e-21 Score=158.91 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=109.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCC----------cccc-hhh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~ 80 (181)
..++|+++|.+|+|||||+|++.+.... +..+ |.......+...+..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3589999999999999999999988742 3333 22232334556777889999999532 1111 123
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
+++.+|++++|+|+++..+.+... .+..... .++|+++|+||+|+.+....+.+...+..........+++.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 467899999999999887776553 3333333 47899999999999764333333332221111112235788999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 184
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=3.2e-21 Score=153.65 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=109.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCE-EEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+..+|+++|++++|||||++++.+..+... .+ |.......+...+. .+.+|||||++.|..++...++.+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4678999999999999999999998776532 22 33333344555444 89999999999999998888899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc--c--CcceEEEEccccCCCCh
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL--R--QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~S~~~~~gv 166 (181)
|+|+++....+.. +.+... ...++|+++++||+|+.+. ..+++...+....+ . ....+++++||++|.|+
T Consensus 165 VVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999864322222 222222 1247899999999998643 22333332211111 1 12357899999999999
Q ss_pred HHHHHHHHH
Q 030192 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~i~~ 175 (181)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.6e-21 Score=158.32 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=104.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee----EEEEEECCEEEEEEEcCCCCC--------cccchhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDK--------IRPLWRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 82 (181)
....+|+++|.+|+|||||+|++.+.......++.+.+ .......+..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 34578999999999999999999987643222222222 233455678999999999753 223345567
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+.+|++++|+|+++. +......+...+.. .++|+++|+||+|+.+... .......+. + + ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~---~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-L---G-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-C---C-CeEEEECCC
Confidence 899999999999753 33334444444443 5799999999999864321 111111111 1 1 246899999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
|.|++++++++.+.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999987754
No 186
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=147.89 Aligned_cols=148 Identities=24% Similarity=0.285 Sum_probs=112.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcc---------cchhhcccc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN 84 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 84 (181)
..|+++|.||+|||||.|+|.+.+.. +..| |....+....+.+.+|.++||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998754 4444 5556677788889999999999965322 234556678
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
+|+++||+|. .+.....++.+..+++. .++|+++|+||+|....+.....-..+++. ..+.+||-+|.
T Consensus 84 ADvilfvVD~--~~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeC--CCCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 9999999999 44455666777777774 579999999999976432222222223333 46789999999
Q ss_pred ChHHHHHHHHHHh
Q 030192 165 GLYEGLDWLSNNI 177 (181)
Q Consensus 165 gv~~~~~~i~~~~ 177 (181)
|+.++++.+...+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=7.9e-21 Score=154.86 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=111.1
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccc-cC--ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+...|+++|+.++|||||+++|.+..+... .+ |.......+...+..+.+|||||++.|..++..+++.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35778999999999999999999987765432 11 2333334566677899999999999999999888899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-c-cc--CcceEEEEccccCCCCh
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-LR--QRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~S~~~~~gv 166 (181)
|+|+++...-+. ...+... ...++|+|+++||+|+.+. ..+++...+... . .. ...++++++||++|.|+
T Consensus 367 VVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999986432222 1222222 1257899999999999653 222332222111 1 11 12468999999999999
Q ss_pred HHHHHHHHH
Q 030192 167 YEGLDWLSN 175 (181)
Q Consensus 167 ~~~~~~i~~ 175 (181)
+++++.+..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999874
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=5.4e-21 Score=145.95 Aligned_cols=159 Identities=21% Similarity=0.163 Sum_probs=106.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-EEEEEEEcCCCCCcc-------cchhhccccccE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~-------~~~~~~~~~~d~ 87 (181)
.|+|+|.||||||||+|++.+.+.. +. ..|.......+...+ ..+.++||||..+.. .....++..+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999987643 22 234445555566654 569999999964321 112234678999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+++|+|++ ..+.+.....+...+... ....++|+++|+||+|+.......+..+.+... .....+++.+||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999987 344555555555444432 122468999999999987543333222222110 011125789999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030192 164 EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~ 179 (181)
.|++++++.+.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988754
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=8e-21 Score=151.80 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCC---cc-ccc--CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGE---IV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~---~~-~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
+.|+++|++++|||||+++|.+.. +. +.. .|....+..+...+..+.+||+||+++|......++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 478999999999999999998743 22 122 244444555666778999999999999988888888999999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
+|+++....+ ..+.+ .++.. .++| +++++||+|+.+....+. +...+....+ ..+++++++|+++|.|+
T Consensus 81 VDa~~G~~~q-T~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGVMTQ-TGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCCcHH-HHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence 9998732111 11111 12222 3566 999999999976432222 2221111111 12468999999999999
Q ss_pred HHHHHHHHHHhh
Q 030192 167 YEGLDWLSNNIA 178 (181)
Q Consensus 167 ~~~~~~i~~~~~ 178 (181)
++++..+...+.
T Consensus 155 ~eL~~~L~~l~~ 166 (581)
T TIGR00475 155 GELKKELKNLLE 166 (581)
T ss_pred hhHHHHHHHHHH
Confidence 999998877654
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=7.3e-21 Score=147.81 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=102.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc----------------------------------cccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|++++|||||+++|+...-. ....|.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 467899999999999999999999742100 0112444555567778
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---- 135 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---- 135 (181)
++.+.+|||||++++.......+..+|++++|+|+++..+......+...+.... ...|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887665566788999999999986322222222222232221 2257999999999975211
Q ss_pred --HhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 136 --AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 136 --~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
.+++...+....+....++++++||++|.|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 1223332222222223468999999999999874
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=2e-20 Score=151.35 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=109.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-c--CccceeEEE--EEE--CCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~--~~~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+...|+++|++++|||||+++|.+..+... . .|....... +.. .+..+.+|||||++.|...+..+++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 5778999999999999999999987765422 1 222222222 222 45899999999999999999889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--cc--CcceEEEEccccCC
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LR--QRHWYIQSTCATSG 163 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~S~~~~ 163 (181)
+++|+|+++....+.. +.+... . ..++|+|+++||+|+.+. ..+++.+.+.... .. ...++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999864332222 222222 1 257899999999998753 2333333322110 11 12368999999999
Q ss_pred CChHHHHHHHHHH
Q 030192 164 EGLYEGLDWLSNN 176 (181)
Q Consensus 164 ~gv~~~~~~i~~~ 176 (181)
.|++++++.+...
T Consensus 396 ~GIdeLle~I~~l 408 (742)
T CHL00189 396 TNIDKLLETILLL 408 (742)
T ss_pred CCHHHHHHhhhhh
Confidence 9999999998764
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=3.4e-20 Score=133.10 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cchhhccccccEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~ 88 (181)
+|+++|++|+|||||++++.+.... .. .+|.......+...+..+++||+||..+.. .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987632 21 334445555667788999999999974332 1234567899999
Q ss_pred EEEEECCCccc-HHHHHHHHH----------------------------------------HHHcCC-------------
Q 030192 89 IFVVDSNDRDR-VVEARDELH----------------------------------------RMLNED------------- 114 (181)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (181)
++|+|++++.. ...+...+. .++++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987542 222211111 111110
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 115 -----------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 -----------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
....+|+++|+||+|+....+.+.+.. . ..++++||++|.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~--------~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLAR--------Q--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhc--------C--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 112368999999999875432222111 1 1477899999999999999998865
No 193
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=4.9e-20 Score=139.61 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=110.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc--------hhhcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (181)
+..++++++|.||+|||||+|.|.+.... +..| |-......++..++++.+.||+|-.+.... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 57899999999999999999999998743 5555 444556678889999999999996543322 23345
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
+++|.+++|+|.+.+.+-..... ..... .++|+++|.||.|+......... ... .+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~--~~~~~----~~~~~i~v~NK~DL~~~~~~~~~-~~~-------~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLAL--IELLP----KKKPIIVVLNKADLVSKIELESE-KLA-------NGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHH--HHhcc----cCCCEEEEEechhcccccccchh-hcc-------CCCceEEEEecC
Confidence 78999999999987633222222 22222 57999999999999876543333 111 122578999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
|+|++.+.+.+.+.+..
T Consensus 361 ~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 361 GEGLDALREAIKQLFGK 377 (454)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999998876643
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=3.7e-20 Score=148.31 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=109.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC--cc---------cc-------cCccceeEEEEEE-----CCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------TT-------IPTIGFNVETVEY-----KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------~~-------~~~~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (181)
++..+++++|+.++|||||+++|+... +. .. ..|.......+.+ .++.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 355699999999999999999997531 10 00 1122222223322 3689999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~ 148 (181)
.+|...+..+++.+|++++|+|+++....+....|.. ... .++|+++|+||+|+.+... .+++...++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 9999999999999999999999987655554444332 222 3689999999999865321 12333333322
Q ss_pred cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
...++++||++|.|++++++.+.+.+..
T Consensus 158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1247899999999999999999887653
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=4.2e-20 Score=123.67 Aligned_cols=157 Identities=25% Similarity=0.338 Sum_probs=124.9
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc---------c-c---CccceeEEEEEECC-EEEEEEEcCCCCCcccch
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T-I---PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------~-~---~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~ 78 (181)
.+....||++.|+.++||||+++++....... . . .|..+.+......+ ..+.+++||||++|...|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 34567899999999999999999998776321 1 1 34455555555544 899999999999999999
Q ss_pred hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
..+++.+.++++++|.+.+..+ .... +.+++.+.. .+|+++.+||.|+.+....+++.+.+.... ...++++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999998777 3333 334444321 299999999999999988988888887663 35589999
Q ss_pred cccCCCChHHHHHHHHHH
Q 030192 159 CATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~ 176 (181)
++.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999887765
No 196
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=2.3e-20 Score=127.49 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=112.0
Q ss_pred HHhhhcccccEEEEEcCCCCChHHHHhhHhcCC-cccccCccc----eeEEEEEECCEEEEEEEcCCC----------CC
Q 030192 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNISFTVWDVGGQ----------DK 73 (181)
Q Consensus 9 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~~----~~~~~~~~~~~~~~i~D~~g~----------~~ 73 (181)
..+.++.....|+++|.+|+|||||||++++.+ ......|.| +++..+... +.++|.||. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 456777888999999999999999999999966 333444444 344444333 899999993 33
Q ss_pred cccchhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC
Q 030192 74 IRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (181)
Q Consensus 74 ~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~ 146 (181)
+.+....|++ +-.++++++|+. ......+..+.+++.+ .++|+++++||+|.....+. ..+.+.+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r--~~~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDAR--HPPKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECC--CCCcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 4455566665 367788889984 4445555566666665 68999999999998764322 3444444433
Q ss_pred cccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
..- ...++..|+.++.|++++...|.+.+.+
T Consensus 168 ~~~--~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPD--DQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCc--cceEEEEecccccCHHHHHHHHHHHhhc
Confidence 221 1116678999999999999999887754
No 197
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=124.29 Aligned_cols=165 Identities=15% Similarity=0.240 Sum_probs=127.7
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE----EEEEECCEEEEEEEcCCCCCcccchhhccccccE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (181)
.+.-.+||.++|++..|||||+-.+.++.+. +...+.|.++ ..+.+.++.+.+||.+|++++....+..+..+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 4456789999999999999999999999886 3355666654 2345567899999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcccCcceEEEEccccCCCC
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (181)
++++||++.++++....+|+.+....+. ...-|+|+||.|+.-.. +.++--.......++-.+.+.|.||+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999998877543 33447899999975322 2222111122233344555788899999999
Q ss_pred hHHHHHHHHHHhhh
Q 030192 166 LYEGLDWLSNNIAS 179 (181)
Q Consensus 166 v~~~~~~i~~~~~~ 179 (181)
++.+|..+..++.+
T Consensus 174 v~KIFK~vlAklFn 187 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998887754
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=1.4e-20 Score=146.27 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=101.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcC--Ccc-------------------------c-------ccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------------T-------TIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-------------------------~-------~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|+.++|||||+++|+.. ... + ...|.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456789999999999999999999752 111 0 011333444556667
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A 136 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~ 136 (181)
+..+.+||+||+++|.......+..+|++++|+|+++.++.... ......+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 89999999999988877666677899999999999876432111 11111122221 2368999999999974211 1
Q ss_pred ----hHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 137 ----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+++...+....+....++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222222223356899999999999986
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=137.40 Aligned_cols=158 Identities=17% Similarity=0.203 Sum_probs=113.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc--ccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc-----------hhh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (181)
..++|+++|.||+|||||+|+++++...- ..+ |.......++.++.++.++||+|..+-.+. ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999988553 333 334444566778999999999994332111 233
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcccCcceEEEEc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
....+|.+++|+|++.+ +......+...+.+ .+.++++++||+|+.+. ...++....+...+..-...+++.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 34679999999999755 44555555555555 68999999999998775 3444444444332222233478899
Q ss_pred cccCCCChHHHHHHHHHHhh
Q 030192 159 CATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 159 S~~~~~gv~~~~~~i~~~~~ 178 (181)
||++|.|++++|+.+.....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EecCCCChHHHHHHHHHHHH
Confidence 99999999999999877543
No 200
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=1.1e-19 Score=130.62 Aligned_cols=155 Identities=20% Similarity=0.189 Sum_probs=109.4
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCc--------------ccc-------cCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEI--------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~--------------~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++...- .+. ..+.......+.+.+..+++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975310 000 11233345567788999999999999999988
Q ss_pred hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC----------
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG---------- 144 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~---------- 144 (181)
+..+++.+|++++|+|+++.... ....+|..... .++|+++++||+|+.... ..+++...+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999875443 33344443332 478999999999986421 1111111111
Q ss_pred ----------------------------------------------CCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 145 ----------------------------------------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 145 ----------------------------------------------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
.......-+|++..||.++.|++.+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0011234578999999999999999999988764
No 201
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-19 Score=117.63 Aligned_cols=162 Identities=22% Similarity=0.309 Sum_probs=124.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc---cccCccceeEEE-EEE---CCEEEEEEEcCCCCCc-ccchhhcccccc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVET-VEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQ 86 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~-~~~---~~~~~~i~D~~g~~~~-~~~~~~~~~~~d 86 (181)
-+..+|+++|..++|||++++++..+... +..||++..+.. ++. ....+.++||.|-..+ ..+..+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 46789999999999999999999866533 346677655432 322 3457999999997776 566788999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCCh
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv 166 (181)
++++||+..+++||+.....-..+-+......+||++++||+|..++.+... ...-.+++...+..+++++.++..+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~---d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM---DVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH---HHHHHHHhhhheeEEEEEeccchhh
Confidence 9999999999999988877666666676667799999999999986643322 1122233445567889999999999
Q ss_pred HHHHHHHHHHhhh
Q 030192 167 YEGLDWLSNNIAS 179 (181)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (181)
-+-|.++...+..
T Consensus 164 ~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 164 YEPFTYLASRLHQ 176 (198)
T ss_pred hhHHHHHHHhccC
Confidence 9999999877643
No 202
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=2.6e-20 Score=121.95 Aligned_cols=135 Identities=24% Similarity=0.307 Sum_probs=95.7
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCC----CCcccchhhccccccEEEEEEEC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ----DKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
||+++|+.|||||||+++|.+.... +..|..+ .+.+ .++||||. ..+.+........+|.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i-----~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAI-----EYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-cCcccee-----Eecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 7999999999999999999987652 3333322 2222 56999993 34455455555789999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
+++.+. ....+... .++|+|-|+||+|+. +....+...+.+.....+ .+|++|+.+|+|++++.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 876442 11112222 358999999999998 444555555555555444 36899999999999999987
Q ss_pred H
Q 030192 174 S 174 (181)
Q Consensus 174 ~ 174 (181)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 203
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=9e-20 Score=145.98 Aligned_cols=139 Identities=18% Similarity=0.247 Sum_probs=98.3
Q ss_pred cCCCCChHHHHhhHhcCCcc-cccCccc--eeEEEEEECCEEEEEEEcCCCCCcccc------hhhcc--ccccEEEEEE
Q 030192 24 GLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (181)
Q Consensus 24 G~~~~GKSsli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~v~ 92 (181)
|.+|+|||||+|++.+.... ...|+.+ .....+..++.++++|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987753 3344333 333456667888999999998776543 23332 3699999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|+++.+. ...+..+... .++|+++++||+|+.+... .+++.+.+ +.+++++||++|.|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9987533 2233333332 4799999999999865332 22333333 34689999999999999
Q ss_pred HHHHHHHHh
Q 030192 169 GLDWLSNNI 177 (181)
Q Consensus 169 ~~~~i~~~~ 177 (181)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=5e-20 Score=130.40 Aligned_cols=146 Identities=18% Similarity=0.112 Sum_probs=92.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCc--cc--------------------------------ccCccceeEEEEEECCEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++|+|||||+++|+...- .. ...|.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999965321 10 01122233344556788999
Q ss_pred EEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 030192 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK 142 (181)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~ 142 (181)
+|||||+.++.......++.+|++++|+|+++....+. .....++... ..+++|+|+||+|+.+... ..++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666677889999999999986532221 1112222221 1256788999999875321 1111111
Q ss_pred hC--CCcccCcceEEEEccccCCCChHH
Q 030192 143 LG--LHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 143 ~~--~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+. ...+.....+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 001111134689999999999875
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=1.6e-19 Score=143.84 Aligned_cols=156 Identities=22% Similarity=0.220 Sum_probs=102.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccC-----ccceeEEEEEE----------------CCEEEEEEEcCCCCCc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY----------------KNISFTVWDVGGQDKI 74 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~ 74 (181)
+..-|+++|++++|||||++++.+..+....+ +.+..+..... ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45679999999999999999999876643221 22322221111 1123889999999999
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHH
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEIT 140 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~ 140 (181)
..++..+++.+|++++|+|+++....+.. +.+ ..+.. .++|+++++||+|+.+.. ..+++.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i-~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQ-EAL-NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHH-HHH-HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99988899999999999999863222211 111 12222 468999999999986421 001110
Q ss_pred h-----------hhCCCcc----------cCcceEEEEccccCCCChHHHHHHHHHH
Q 030192 141 D-----------KLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 141 ~-----------~~~~~~~----------~~~~~~~~~~S~~~~~gv~~~~~~i~~~ 176 (181)
. .+....+ .....+++++||++|+|+++++.++...
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0 1111111 1235789999999999999999988653
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=1.1e-19 Score=145.13 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC--Ccccc-----------------cCccceeEEEEEECCEEEEEEEcCCCCCcccch
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (181)
.+|+++|+.++|||||+++|+.. .+... ..|+......+.+.++.+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999852 22111 123333445678889999999999999999888
Q ss_pred hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc--cCcce
Q 030192 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHW 153 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 153 (181)
..+++.+|++++|+|+.+.. ......+|..... .++|+++++||+|+.+... .+++...+..... .+..+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999997532 3344455555544 4789999999999865321 2233333221111 23456
Q ss_pred EEEEccccCCC----------ChHHHHHHHHHHhh
Q 030192 154 YIQSTCATSGE----------GLYEGLDWLSNNIA 178 (181)
Q Consensus 154 ~~~~~S~~~~~----------gv~~~~~~i~~~~~ 178 (181)
+++.+|+++|. |++.+|+.+++.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999996 79999999988764
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=2.5e-19 Score=143.11 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=112.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc--CCcccc-------------cCcccee----EEEEEECCEEEEEEEcCCCCCcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVTT-------------IPTIGFN----VETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~-------------~~~~~~~----~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
++-.+|+++|+.++|||||+++|+. +.+... .++.+++ ...+.+.++.+++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3457999999999999999999986 222211 1122332 34566788999999999999999
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCC-Ccc-cC
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGL-HSL-RQ 150 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~-~~~-~~ 150 (181)
..+..+++.+|++++|+|+.+.... .....+..... .++|.++++||+|..+.. ..+++...+.. ... .+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999764322 23333433333 478899999999987543 23334443321 111 23
Q ss_pred cceEEEEccccCCC----------ChHHHHHHHHHHhh
Q 030192 151 RHWYIQSTCATSGE----------GLYEGLDWLSNNIA 178 (181)
Q Consensus 151 ~~~~~~~~S~~~~~----------gv~~~~~~i~~~~~ 178 (181)
.+++++.+|+++|. |+..+++.+.+.+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 56789999999998 58888888887664
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=6.3e-20 Score=141.56 Aligned_cols=159 Identities=19% Similarity=0.106 Sum_probs=103.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc------cCccceeEEEE--------------------EE------CCEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVETV--------------------EY------KNIS 62 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~--------------------~~------~~~~ 62 (181)
+..++|+++|+.++|||||+++|.+...... .-|....+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 5678999999999999999999976432111 11111111110 01 1467
Q ss_pred EEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 030192 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AE 138 (181)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~ 138 (181)
+.+||+||+++|...+......+|++++|+|+++........+.+. .+... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888777788999999999986431111222222 12211 13578999999999764322 22
Q ss_pred HHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
+...+.. ....+++++++|+++|.|++++++.+...+.
T Consensus 159 i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKG--TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhh--cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2221111 1123568999999999999999999987653
No 209
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=1.8e-19 Score=147.46 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=104.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCCcccc----------hhhcc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~ 82 (181)
+.++|+++|++|+|||||+|++.+.+.. ...| |.+.....+...+.+++++||||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4579999999999999999999987643 2222 333344456678889999999998665421 12222
Q ss_pred --ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcccCcceEEE
Q 030192 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQ 156 (181)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~ 156 (181)
+.+|++++|+|+++.++. ..++.+... .++|+++++||+|+.+.... +++.+.+ +.+++
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L--------G~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL--------GCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh--------CCCEE
Confidence 479999999999876442 233333332 47999999999998754322 2233333 34688
Q ss_pred EccccCCCChHHHHHHHHHHh
Q 030192 157 STCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 157 ~~S~~~~~gv~~~~~~i~~~~ 177 (181)
++|+++|.|++++.+.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999887754
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=5.8e-20 Score=130.99 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=95.5
Q ss_pred EEEEEcCCCCChHHHHhhHhcCC---------------------------cccc-------cCccceeEEEEEECCEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IVTT-------IPTIGFNVETVEYKNISFT 64 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~---------------------------~~~~-------~~~~~~~~~~~~~~~~~~~ 64 (181)
+|+++|++++|||||+++|+... .... ..|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999995321 0000 1133333455667889999
Q ss_pred EEEcCCCCCcccchhhccccccEEEEEEECCCccc-----H-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----C
Q 030192 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR-----V-VEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M 134 (181)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~ 134 (181)
+|||||+.++...+...+..+|++++|+|+++... . ......+. .... ...+|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEEEEccccccccccHH
Confidence 99999998877777777788999999999987421 1 11222222 2221 123789999999998732 1
Q ss_pred CHhHHHhh----hCCCcccCcceEEEEccccCCCChH
Q 030192 135 NAAEITDK----LGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 135 ~~~~~~~~----~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
..+++... +....+....++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222222 2222223346789999999999986
No 211
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.7e-20 Score=122.16 Aligned_cols=162 Identities=32% Similarity=0.577 Sum_probs=137.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEEC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
++.=|++++|-.|+|||||++.+..++.....||...+...+...+..+..+|.+|+...++.|..|+-.+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 56679999999999999999999999988778888877777889999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------cccCcceEEEEccccC
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATS 162 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~S~~~ 162 (181)
.+.+.+.+...-+...+......+.|+++.+||+|.+.+...++++..+++. ....+...+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 9999999999888888777666789999999999999887666666554321 1123456788899999
Q ss_pred CCChHHHHHHHHHH
Q 030192 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~gv~~~~~~i~~~ 176 (181)
+.|.-+.|.|+.+.
T Consensus 178 ~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQY 191 (193)
T ss_pred cCccceeeeehhhh
Confidence 99988888877653
No 212
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=2.3e-19 Score=125.39 Aligned_cols=145 Identities=19% Similarity=0.143 Sum_probs=95.8
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc------------cc-------ccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~------------~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (181)
.++|+++|+.++|||||+++|++... .+ ...|.......+..++..+.++||||+.++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 00 011222333345556788999999999888877
Q ss_pred hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcccCc
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQR 151 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~ 151 (181)
....+..+|++++|+|+...-.- .....+. .+.. .++| +|+++||+|+..... .+ ++...+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~-~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHH-HHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 77778899999999999754221 1222232 2332 3565 789999999864321 11 23333322223334
Q ss_pred ceEEEEccccCCCCh
Q 030192 152 HWYIQSTCATSGEGL 166 (181)
Q Consensus 152 ~~~~~~~S~~~~~gv 166 (181)
+++++++|+++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 678999999999985
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=3.7e-19 Score=137.30 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=101.2
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc------ccCccceeEEEEEE--------------------------CCE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVEY--------------------------KNI 61 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~--------------------------~~~ 61 (181)
.+..++|+++|+.++|||||+.+|.+..... ...|....+..... ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3567999999999999999999996532211 11122221111000 025
Q ss_pred EEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 030192 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA--- 137 (181)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--- 137 (181)
.+.+|||||+++|..........+|++++|+|++++. ..+ ....+.. +... ...|+++++||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~-t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQ-TKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChh-HHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 7999999999888766555556789999999998643 121 1111221 1111 234789999999997643322
Q ss_pred -HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 138 -EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
++...+.. ....+++++++||++|.|++++++.+.+.+.
T Consensus 162 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 22222111 1123568999999999999999999988654
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=9.3e-19 Score=139.85 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=101.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccC-----ccceeEEEEEE------CC-----E-----EEEEEEcCCCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY------KN-----I-----SFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~------~~-----~-----~~~i~D~~g~~~ 73 (181)
.+...|+++|++|+|||||++++.+.......+ +.+..+..... .. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 466789999999999999999998765433222 23322221110 00 1 268999999999
Q ss_pred cccchhhccccccEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~ 136 (181)
|...+...+..+|++++|+|+++ ++++..+. .+.. .++|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99888888889999999999986 33333221 2222 4789999999999852100 0
Q ss_pred h-----------HHHhhhCCCccc----------CcceEEEEccccCCCChHHHHHHHHH
Q 030192 137 A-----------EITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 137 ~-----------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
. ++...+....+. ...++++++||++|.|+++++..+..
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 011111111111 13578999999999999999988764
No 215
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=6.1e-19 Score=125.76 Aligned_cols=152 Identities=24% Similarity=0.223 Sum_probs=99.4
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccc-----------------cCc-------cceeE-----------------EEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTT-----------------IPT-------IGFNV-----------------ETVE 57 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~-----------------~~~-------~~~~~-----------------~~~~ 57 (181)
+|+++|+.++|||||+++|..+.+... ..+ .++.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999986543210 001 11110 1223
Q ss_pred ECCEEEEEEEcCCCCCcccchhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 135 (181)
..+..+.++|+||+.+|.+.....+. .+|++++|+|+..... .....+..++.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999888766554443 6999999999875432 233333333333 4689999999999875432
Q ss_pred H----hHHHhhhCCCcc---------------------cCcceEEEEccccCCCChHHHHHHHHH
Q 030192 136 A----AEITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 ~----~~~~~~~~~~~~---------------------~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
. +++.+.+..... .....++|.+|+.+|.|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2 233333332111 123458999999999999999987754
No 216
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.2e-19 Score=119.08 Aligned_cols=155 Identities=22% Similarity=0.340 Sum_probs=131.3
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccccEEEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (181)
.++++++|..|.||++++.+.+.+.|. .+.+|.+...+.... ..+++..|||.|++.+......++-+..+.+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 689999999999999999999999887 468899988765433 348999999999999999988888899999999
Q ss_pred EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
||++..-.+.+...|..++++.- .++||++++||.|..... .......+.+..+..+++.|++.+-|.+.-|-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchH
Confidence 99999999999999999987754 479999999999976543 12223455566778899999999999999999
Q ss_pred HHHHHhh
Q 030192 172 WLSNNIA 178 (181)
Q Consensus 172 ~i~~~~~ 178 (181)
|+.+++.
T Consensus 163 ~LarKl~ 169 (216)
T KOG0096|consen 163 WLARKLT 169 (216)
T ss_pred HHhhhhc
Confidence 9988764
No 217
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=126.16 Aligned_cols=163 Identities=20% Similarity=0.177 Sum_probs=116.8
Q ss_pred HHHhhhc--ccccEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECCEEEEEEEcCCCCC--------c
Q 030192 8 LFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDK--------I 74 (181)
Q Consensus 8 ~~~~~~~--~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~ 74 (181)
.+++++. ....+|++.|.||+|||||++.+.+.+.. .. ..|.++....+..+..+++++||||--+ -
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 4444544 36789999999999999999999988764 22 4578888888888989999999999321 1
Q ss_pred ccchhhccc-cccEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCc
Q 030192 75 RPLWRHYFQ-NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151 (181)
Q Consensus 75 ~~~~~~~~~-~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (181)
.......++ -.++++|++|.+..+ +++.....|.++-.. .+.|+++|+||+|..+.+..+++..........
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~-- 311 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE-- 311 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc--
Confidence 111222223 378899999998654 557777777777665 458999999999999876666665544332221
Q ss_pred ceEEEEccccCCCChHHHHHHHHHHh
Q 030192 152 HWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 152 ~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
....+++..+.+++.+-+.+....
T Consensus 312 --~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 312 --EPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred --cccceeeeehhhHHHHHHHHHHHh
Confidence 133578888888887777766653
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=5.6e-19 Score=141.76 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCC---ccc---ccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~---~~~---~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
+-|+++|+.++|||||+++|.+.. +.+ ...|+...+..+.. ++..+.+||+||+++|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999998643 221 13344443334433 45678999999999987777777889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCCcccC---cceEEEEccccCCCCh
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHSLRQ---RHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~S~~~~~gv 166 (181)
|+|++.... ........++.. .++| +++|+||+|+.+....++....+.. .+.. ...+++++|+++|.|+
T Consensus 81 VVda~eg~~--~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~-~l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 81 VVACDDGVM--AQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKA-VLREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred EEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHH-HHHhcCCCCCcEEEEeCCCCCCC
Confidence 999976321 111111223322 2344 6799999999764333222222210 1111 1357899999999999
Q ss_pred HHHHHHHHHHh
Q 030192 167 YEGLDWLSNNI 177 (181)
Q Consensus 167 ~~~~~~i~~~~ 177 (181)
+++++.+.+..
T Consensus 155 ~~L~~~L~~~~ 165 (614)
T PRK10512 155 DALREHLLQLP 165 (614)
T ss_pred HHHHHHHHHhh
Confidence 99999997654
No 219
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.4e-18 Score=135.56 Aligned_cols=150 Identities=22% Similarity=0.267 Sum_probs=112.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEECCEEEEEEEcCCCCC------cccchhhcc--cc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK------IRPLWRHYF--QN 84 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~------~~~~~~~~~--~~ 84 (181)
+..+|+++|.||+|||||.|++++.+.. .+-| |.+-....+...+.++++.|+||--. -+....+++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999998754 5555 55555666778888999999999321 122233333 36
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcccCcceEEEEccc
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.|+++.|+|+++.++- .....+++. .+.|+++++|++|..+.. ..+++.+.++. +++++||
T Consensus 82 ~D~ivnVvDAtnLeRn---LyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERN---LYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHH---HHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence 8999999999876443 333333433 478999999999987643 45567777766 5999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030192 161 TSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~~ 180 (181)
++|.|++++.+.+.+...++
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998766554
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=1.1e-18 Score=119.00 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=94.2
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeE--EEEEECCEEEEEEEcCCCCC----------cccchhhccc--
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~-- 83 (181)
.|+++|++|+|||||++.+.+.... ...++.+.+. ..+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965443 2333333322 222222 3899999999543 2233333333
Q ss_pred -cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc--cCcceEEEEccc
Q 030192 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL--RQRHWYIQSTCA 160 (181)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~S~ 160 (181)
+.+++++++|.....+... ..+...+.. .+.|+++++||+|+............... .+ .....+++++|+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKK-ELKLFEIDPPIILFSS 153 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHH-HHHhccCCCceEEEec
Confidence 4678999999976532211 112222222 25889999999998654332222222210 01 123346889999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030192 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~ 177 (181)
+++.|++++++++.+.+
T Consensus 154 ~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 154 LKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 221
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=1.5e-18 Score=125.39 Aligned_cols=152 Identities=29% Similarity=0.367 Sum_probs=106.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCE-EEEEEEcCCCCCcc-------cchhhccccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNI-SFTVWDVGGQDKIR-------PLWRHYFQNT 85 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~i~D~~g~~~~~-------~~~~~~~~~~ 85 (181)
...+.++|-||+|||||++++...+.. ++ ..|.......+.+++. .+.+-|.||--+.. ......++.|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 347899999999999999999987642 11 2233333334555544 49999999932211 1233445789
Q ss_pred cEEEEEEECCCc---ccHHHHHHHHHHH-HcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcccCcceEEEEcc
Q 030192 86 QGLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 86 d~~i~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
+.+++|+|++.+ ..++.....+.++ ..+..+.+.|.++|+||+|+.+.+.. +++.+.+.-. .++++|
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvs 348 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVS 348 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEee
Confidence 999999999987 6676666655444 23445567999999999999654322 4555555433 688999
Q ss_pred ccCCCChHHHHHHHHH
Q 030192 160 ATSGEGLYEGLDWLSN 175 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~~ 175 (181)
|+.++|++++++.+-.
T Consensus 349 A~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 349 AKSGEGLEELLNGLRE 364 (366)
T ss_pred eccccchHHHHHHHhh
Confidence 9999999999987754
No 222
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.78 E-value=6.3e-18 Score=123.62 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=80.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcCC--cc------------c-------ccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++... .. . ...|.......+.+.+..++++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996411 00 0 011333444567778999999999999988888
Q ss_pred hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
+..+++.+|++++|+|+.+...-+ ....+..... .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 888999999999999997643322 2233333322 4689999999999863
No 223
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=2.5e-18 Score=132.20 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=103.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCc------------c-------cccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (181)
.+..++|+++|+.++|||||+++|++... . ....|.......+...+..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46789999999999999999999976310 0 0111333333344446778999999999888
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcc
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAA-----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (181)
..........+|++++|+|+.....-+ ..+.+.. +.. .++| +|+++||+|+.+.++.. ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~-~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILL-ARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHH-HHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 777666678899999999997532221 2222222 222 3566 67899999987432211 22222222222
Q ss_pred cCcceEEEEccccCCC--------ChHHHHHHHHHHh
Q 030192 149 RQRHWYIQSTCATSGE--------GLYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~--------gv~~~~~~i~~~~ 177 (181)
.....+++++|+++|. +++++++.+.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2234689999999983 5778888777654
No 224
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.1e-18 Score=115.19 Aligned_cols=165 Identities=25% Similarity=0.387 Sum_probs=122.2
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccc---cccEE
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGL 88 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~ 88 (181)
..+...-.|+++|+.+||||+|.-+|..+......+++..+...+........++|.||+.+.+.....++. .+-++
T Consensus 33 ~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 33 FRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred HhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 333455789999999999999999999997777777887777777777777999999999998887777776 79999
Q ss_pred EEEEECCC-cccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------------------
Q 030192 89 IFVVDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG--------------------- 144 (181)
Q Consensus 89 i~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~--------------------- 144 (181)
++|+|+.. ........+.+-+++... ....+|+++.+||.|+.-+...+-+++.++
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999864 344556666666666554 346789999999999865433222222110
Q ss_pred --------------CCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 145 --------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 145 --------------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
...+....+.+.++|++++ +++++-+|+..++
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0011224678999999998 7999988887653
No 225
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=2.6e-19 Score=138.03 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=122.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE---EEEEECCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
..+.++|+++|+.|+||||||-++..+.++...|..-..+ ..+.-+.+...+.|++..++-+.....-++++|++++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 3678999999999999999999999999876544221111 2233456778999999777666665666799999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCH--hH----HHhhhCCCcccCcceEEEEccccC
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNA--AE----ITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
||+.++++++..+...|...+++.. ..++|+|+|+||+|....... +. +...+.. --.+++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E------iEtciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE------IETCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH------HHHHHhhhhhh
Confidence 9999999999999999999998754 246999999999998765432 22 2222111 11477999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
-.++.++|.+..+++..
T Consensus 160 ~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIH 176 (625)
T ss_pred hhhhHhhhhhhhheeec
Confidence 99999999998887653
No 226
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=1.1e-17 Score=122.78 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=80.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc--c-------------------ccCccceeEEEEEECCEEEEEEEcCCCCCcccc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV--T-------------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (181)
+|+++|++|+|||||+++++...-. . ...+.......+.+.+..+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999743210 0 012333344556778899999999999888888
Q ss_pred hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
+..+++.+|++++|+|+++...... ...|..... .++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE----AGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCccCC
Confidence 8888899999999999987654432 223332222 4689999999999863
No 227
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.77 E-value=3.1e-18 Score=123.19 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=104.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE----EEEEECCEEEEEEEcCCCCC------------cccc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDK------------IRPL 77 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~------------~~~~ 77 (181)
+.+.++|+++|.||+|||||.|.+.+.+.......+..+- ..+.-+...+.++||||--. +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3678999999999999999999999998764433222222 33444778999999999211 1112
Q ss_pred hhhccccccEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---------------C--HhH
Q 030192 78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---------------N--AAE 138 (181)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---------------~--~~~ 138 (181)
.....+++|.+++|+|+++.... ......+... .++|-++|+||.|..... . ..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 23345789999999999864332 1222222222 368899999999976421 1 112
Q ss_pred HHhhhCCCc-----ccCcce----EEEEccccCCCChHHHHHHHHHHhh
Q 030192 139 ITDKLGLHS-----LRQRHW----YIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 139 ~~~~~~~~~-----~~~~~~----~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
+.+.+.... -+.++| .+|.+||++|+|++++-+++.....
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 222222111 112334 4889999999999999999987653
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=4.3e-18 Score=131.05 Aligned_cols=158 Identities=20% Similarity=0.154 Sum_probs=101.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC-------Cc-----cc-------ccCccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~-------~~-----~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
+..++|+++|++++|||||+++|++. .+ .. ..-|.......+..++..+.++||||+.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56789999999999999999999862 11 00 0112223333344567789999999998887
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccc
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.+.... ...+.+..... .++|.+ +++||+|+.+... .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 7666777889999999999763222 12222322222 356755 6799999974322 11 222222111111
Q ss_pred CcceEEEEccccCCC----------ChHHHHHHHHHHh
Q 030192 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~----------gv~~~~~~i~~~~ 177 (181)
...++++++|+++|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 224789999999984 6778888777654
No 229
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=2.3e-17 Score=135.01 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=88.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC-------------cc--------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-------------IV--------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-------------~~--------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (181)
.++..+|+++|+.|+|||||+++|+... .. ....|.......+.+.+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3567899999999999999999997521 00 11234555556778889999999999999
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
++...+..+++.+|++++|+|+++....+.. ..|..... .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 9988889999999999999999876665433 33333322 47899999999998753
No 230
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.76 E-value=4e-17 Score=129.09 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=82.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--Ccc---------------c-c-------cCccceeEEEEEECCEEEEEEEcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIV---------------T-T-------IPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~---------------~-~-------~~~~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++|+|||||.++|+.. ... . . ..+.......+.+.++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 46789999999999999999999631 110 0 0 012222334577789999999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
|+.+|......+++.+|++++|+|+++.... ....+|... .. .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCcccc
Confidence 9999988777788999999999999865332 233334333 22 5799999999999865
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=2.2e-17 Score=120.62 Aligned_cols=122 Identities=21% Similarity=0.261 Sum_probs=86.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCC--ccc---------------c--------cCccceeEEEEEECCEEEEEEEcCCCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGE--IVT---------------T--------IPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~--------~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (181)
.+|+++|++|+|||||+++++... ... . ..+.......+.+.+..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999997421 000 0 112223345677889999999999999
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG 144 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~ 144 (181)
+|......+++.+|++++|+|+++.... ....+|. .... .++|+++++||+|+..... .+++...++
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 8887777788999999999999865332 2223333 3222 4789999999999866432 345555444
No 232
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=7.3e-18 Score=130.28 Aligned_cols=147 Identities=19% Similarity=0.171 Sum_probs=96.0
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc-----------------cccC--ccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-----------------~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (181)
.+..++|+++|++++|||||+++|++..-. +..+ |.......+..++..+.++||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 466799999999999999999999864110 0001 222223344556778999999999888
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+...-. ....+.+ ..+.. .++| +|+++||+|+.+.... + ++...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~-~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHI-LLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHH-HHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777789999999999975322 1222222 23322 3567 7789999999753221 1 22233222222
Q ss_pred cCcceEEEEccccCCCC
Q 030192 149 RQRHWYIQSTCATSGEG 165 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~g 165 (181)
....++++++|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22347899999999874
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=1.6e-17 Score=117.97 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=76.7
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccc------------------cCcccee----EEEEE-----ECCEEEEEEEcCCC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTT------------------IPTIGFN----VETVE-----YKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~----~~~~~-----~~~~~~~i~D~~g~ 71 (181)
+|+++|+.|+|||||+++|........ ....+.. ...+. ...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999976432110 0011111 12221 23578999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
.++......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888899999999999987665432 233333322 358999999999975
No 234
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=4.5e-17 Score=121.76 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=110.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc---cccCccceeEEEEEEC-CEEEEEEEcCCCCC---------cccchhhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQDK---------IRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~---------~~~~~~~~ 81 (181)
..-..|.++|-+|+|||||+|++.+.... ..+.|...+...+... +..+.+.||.|--+ |+.....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE- 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE- 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-
Confidence 46679999999999999999999977644 2356777777777775 57899999999322 2222222
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
...+|+++.|+|+++|.-. .....-.+++.+.....+|+|+|.||+|+..... ...+.... + ..+.+||
T Consensus 269 ~~~aDlllhVVDaSdp~~~-~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iSA 338 (411)
T COG2262 269 VKEADLLLHVVDASDPEIL-EKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFISA 338 (411)
T ss_pred hhcCCEEEEEeecCChhHH-HHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEEe
Confidence 2579999999999998443 3344445555555546799999999999765433 11221111 1 3567999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030192 161 TSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~ 178 (181)
++|.|++.+.+.|...+.
T Consensus 339 ~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 339 KTGEGLDLLRERIIELLS 356 (411)
T ss_pred ccCcCHHHHHHHHHHHhh
Confidence 999999999999988765
No 235
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.76 E-value=1.8e-18 Score=118.04 Aligned_cols=126 Identities=27% Similarity=0.434 Sum_probs=79.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE---CCEEEEEEEcCCCCCcccchhhc---cccccEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHY---FQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~i 89 (181)
+.-.|+++|+.|||||+|..+|..+....+..++..+.. +.. ....+.++|+||+.+.+...... ..++.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 346799999999999999999999977666555543332 222 34579999999999988755444 78899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030192 90 FVVDSND-RDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDK 142 (181)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~ 142 (181)
||+|++. +..+....+.+.+++... ....+|+++++||.|+........+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~ 136 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL 136 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence 9999974 444555666665555432 2356999999999999875544444433
No 236
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=8.2e-18 Score=118.10 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=95.2
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccce---e--EEEEEE-CCEEEEEEEcCCCCCcccchhhc-----ccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF---N--VETVEY-KNISFTVWDVGGQDKIRPLWRHY-----FQN 84 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~---~--~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~-----~~~ 84 (181)
.++|+++|++|+|||||+|.+.+..... ..++.+. + ...+.. ....+.+||+||..........+ +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3689999999999999999999865432 2222221 1 111111 12478999999975432222222 567
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhC---CCccc---
Q 030192 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLG---LHSLR--- 149 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~---~~~~~--- 149 (181)
+|++++|.+. ++......+...+.. .+.|+++|+||+|+..+.. .+++.+.+. ...++
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998887432 344455555555554 3678999999999843211 112221111 00011
Q ss_pred CcceEEEEcccc--CCCChHHHHHHHHHHhhh
Q 030192 150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 150 ~~~~~~~~~S~~--~~~gv~~~~~~i~~~~~~ 179 (181)
....++|.+|+. .+.|+..+.+.+...|.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 122368889998 578999999999988765
No 237
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=2.8e-17 Score=126.57 Aligned_cols=146 Identities=19% Similarity=0.122 Sum_probs=93.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC------------ccc-------ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (181)
.+..++|+++|+.++|||||+++|++.. ... ...|.......+...+..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 3677999999999999999999997420 000 112333334445556778999999999988
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCCH-h----HHHhhhCCCcc
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (181)
..........+|++++|+|+......+ ..+.+..... .++|. |+++||+|+.+.... + ++...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 776666667899999999997632222 2222222222 35564 578999998753221 1 22222222222
Q ss_pred cCcceEEEEccccCCC
Q 030192 149 RQRHWYIQSTCATSGE 164 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~ 164 (181)
....++++++|+++|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 2223789999999875
No 238
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.4e-17 Score=123.93 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=113.7
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCC-----------cccc-------cCccceeEEEEEE---CCEEEEEEEcCCC
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGE-----------IVTT-------IPTIGFNVETVEY---KNISFTVWDVGGQ 71 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------~~~~-------~~~~~~~~~~~~~---~~~~~~i~D~~g~ 71 (181)
+.++-.++.|+.+...|||||.++++... +.+. .-|+.-....+-+ ..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 33677899999999999999999996421 1000 1122222233333 4599999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcc
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~ 148 (181)
.+|.......+..|+++++|+|++..-..+.....+..+- .+..+|.|+||+|++.+.. ..++.+.+....
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~- 209 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP- 209 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-
Confidence 9999999999999999999999987655566666665553 3677999999999986532 223333333332
Q ss_pred cCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
.+++.+|||+|.|++++++.+++.+.
T Consensus 210 ----~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 210 ----AEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ----cceEEEEeccCccHHHHHHHHHhhCC
Confidence 26778999999999999999998764
No 239
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=115.54 Aligned_cols=153 Identities=22% Similarity=0.198 Sum_probs=107.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCEEEEEEEcCCC----CCc---ccchhhcccc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQ----DKI---RPLWRHYFQN 84 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~---~~~~~~~~~~ 84 (181)
...-+++++|.|++|||||++.+++.+.. ++ +.|......-+++++.++++.|+||- ... -+......++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 34569999999999999999999987643 22 33444445558889999999999972 111 2445667799
Q ss_pred ccEEEEEEECCCccc-HHHHHHHHHH----------------------------------------HHcCC---------
Q 030192 85 TQGLIFVVDSNDRDR-VVEARDELHR----------------------------------------MLNED--------- 114 (181)
Q Consensus 85 ~d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~--------- 114 (181)
||++++|+|+..... .+.+...+.+ ++++.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986543 3233222221 11110
Q ss_pred ---------------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 115 ---------------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 115 ---------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
...-+|.++|.||.|+...+..+.+.+.. .++.+||+.+.|++++.+.+.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 01235799999999998755555554443 367899999999999999999876
No 240
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.74 E-value=2.1e-17 Score=134.02 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=101.9
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCc--cc------------c----------------------cCc
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPT 48 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~------------~----------------------~~~ 48 (181)
+..++.+...+..++|+++|++++|||||+++|+...- .+ . .-|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 45667777778889999999999999999999975321 00 0 012
Q ss_pred cceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
....+..+...+..+.++||||++++..........+|++++|+|+.....-+.... + .++... ..+++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~-~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-S-FIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-H-HHHHHh--CCCeEEEEEEec
Confidence 222334455677889999999998876655666789999999999975422111111 1 111111 236789999999
Q ss_pred CCCCC--CCHhHHHhhhCC--CcccCcceEEEEccccCCCChHH
Q 030192 129 DLPNA--MNAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 129 Dl~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
|+.+. ...+++...+.. ..+.....+++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 98742 112222222210 00111235688999999999874
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=3.8e-17 Score=125.74 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=102.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc------------c-------cccCccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
+..++|+++|+.++|||||+++|++... . ....|.......+..++..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 6779999999999999999999986210 0 00113333333444467789999999998887
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCCccc
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 149 (181)
......+..+|++++|+|+.....- ...+.+ ..+.. .++|.+ +++||+|+.+... .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~-~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-HHHHHH-HHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 7777777899999999999754221 222222 23332 357765 6899999975321 11 232333222222
Q ss_pred CcceEEEEccccCCC----------ChHHHHHHHHHHh
Q 030192 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~----------gv~~~~~~i~~~~ 177 (181)
...++++.+|++++. |+.++++.+...+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345688999999875 4667777766543
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.73 E-value=7.6e-17 Score=126.07 Aligned_cols=147 Identities=20% Similarity=0.146 Sum_probs=97.5
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC------cc-----------c--ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------IV-----------T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------~~-----------~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (181)
.+..++|+++|++++|||||+++|++.. .. + ...|.......+..++..+.++|+||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3567899999999999999999998521 00 0 011222333445567889999999999998
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcc
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (181)
.......+..+|++++|+|+.+...- ...+.+..... .++| +|+++||+|+.+.+. .+ ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 87777777889999999999754322 22333333322 3666 788999999976322 11 22233322222
Q ss_pred cCcceEEEEccccCCCC
Q 030192 149 RQRHWYIQSTCATSGEG 165 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~g 165 (181)
....++++.+|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 33467899999988753
No 243
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.73 E-value=2.6e-19 Score=119.77 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=124.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccCccceeEE--EEEE---CCEEEEEEEcCCCCCcccchhhccccccEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (181)
--++++++|.-|+||||++.++....+. .+.++++..+. ...+ .-+++++||..|++++..+...+++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 3468999999999999999999988876 45667775542 1222 3467899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHcCCCCCC---CeEEEEEeCCCCCCCC---CHhHHHhhhCCCcccCcceEEEEccccCC
Q 030192 90 FVVDSNDRDRVVEARDELHRMLNEDELRD---AVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~---~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (181)
+|||+++.-.++....|.+++.....+++ .|+++..||||..... ..+.+.+.-....+. ..+++|+|.+
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~----gwtets~Ken 179 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE----GWTETSAKEN 179 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc----ceeeeccccc
Confidence 99999999999999999888877655544 7899999999976532 122333322222222 3779999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030192 164 EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 164 ~gv~~~~~~i~~~~~~ 179 (181)
.+++|+.+.++.++.-
T Consensus 180 kni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILV 195 (229)
T ss_pred cChhHHHHHHHHHHHh
Confidence 9999999999987753
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.73 E-value=2.9e-17 Score=128.71 Aligned_cols=152 Identities=18% Similarity=0.128 Sum_probs=97.3
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCc--cc------------c----------------------cCccceeEEEE
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTIGFNVETV 56 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~------------~----------------------~~~~~~~~~~~ 56 (181)
..+..++|+++|++++|||||+++|+...- .. . .-|+...+..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346789999999999999999999964320 00 0 01223333445
Q ss_pred EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCC-
Q 030192 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~- 134 (181)
..++..+.++||||+++|.......+..+|++++|+|+...-.-+.... .+...+. ..|+|+++||+|+.+..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchh
Confidence 5677899999999998887665656789999999999975322111111 1112211 25789999999987422
Q ss_pred -CHhHHHhhhCC--Cccc-CcceEEEEccccCCCChHHH
Q 030192 135 -NAAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 135 -~~~~~~~~~~~--~~~~-~~~~~~~~~S~~~~~gv~~~ 169 (181)
..+++...+.. .... ....+++++|+++|.|++++
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 12233322210 0000 12467999999999999764
No 245
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=4.4e-17 Score=125.81 Aligned_cols=147 Identities=17% Similarity=0.112 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCc--cc------------c----------------------cCccceeEEEEEECCE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTIGFNVETVEYKNI 61 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~--~~------------~----------------------~~~~~~~~~~~~~~~~ 61 (181)
++|+++|+.++|||||+++|+...- .. . .-|....+..+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999964210 00 0 0123333445566788
Q ss_pred EEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030192 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI 139 (181)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~ 139 (181)
.+.++||||+++|.......+..+|++++|+|+......+....+ .++... ..+++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~--~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS--YIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH--HHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 999999999998877666777899999999999754322211111 111111 1346899999999875321 1222
Q ss_pred HhhhCC--CcccCcceEEEEccccCCCChHH
Q 030192 140 TDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
...+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 00111245799999999999875
No 246
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.73 E-value=3.8e-16 Score=127.84 Aligned_cols=114 Identities=19% Similarity=0.129 Sum_probs=84.4
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC--c---cc----------------ccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I---VT----------------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~---~~----------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (181)
.++-.+|+++|++|+|||||+++|+... . .. ...|.......+.+.+..+++|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 4566799999999999999999996421 1 00 0113334455677789999999999999
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
++...+..+++.+|++++|+|+.+....+. ...|... .. .++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 888888888999999999999987544332 2333332 22 4689999999999875
No 247
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.72 E-value=7.2e-17 Score=125.66 Aligned_cols=151 Identities=18% Similarity=0.148 Sum_probs=101.5
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC--c-------------------------cc-------ccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------~~-------~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|+.++|||||+.+|+... . .. ...|.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3567899999999999999999996511 0 00 011333444556678
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCccc---H---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~ 132 (181)
+..++++|+||+.+|.......+..+|++++|+|+....- + ....+-+... .. .++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 8899999999999998888888899999999999975320 0 1222222222 22 3554 679999999432
Q ss_pred ----CCC----HhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 133 ----AMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 133 ----~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
... .+++...+....+....++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 112 233334443333444468899999999999863
No 248
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=3.8e-17 Score=127.17 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=101.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCc---------------------------cc-------ccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VT-------TIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---------------------------~~-------~~~~~~~~~~~~~~~ 59 (181)
.+..++|+++|+.++|||||+.+|+...- .+ ..-|+......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999999964110 00 011334444556668
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHH-------HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~ 131 (181)
+..++++|+||+++|.......+..+|++++|+|+++. .++ ...+.+. ++.. .++ ++|+++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 88999999999999999888889999999999999752 121 2222222 2222 355 578899999976
Q ss_pred CCC--------CHhHHHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 132 NAM--------NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 132 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+.. ..+++...+....+....++++++|+++|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 1223333333333333457899999999999853
No 249
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=9.5e-17 Score=121.65 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=116.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc-----------cc-------ccCccceeEEEE-----EECCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----------VT-------TIPTIGFNVETV-----EYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----------~~-------~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 71 (181)
++-.+..++.+-..|||||..|++...- .. ..-|+..+..++ +++.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 4556889999999999999999965220 00 011222222222 235689999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcc
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~ 148 (181)
-+|.......+..|.+.++|+|++..-..+.+.+.+..+-. +.-+|-|+||+|++... ...++.+.+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999877666777777766643 57799999999998754 34456666665532
Q ss_pred cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
..+.+|||+|.|++++++.|++.+..
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCC
Confidence 35679999999999999999988743
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.72 E-value=4.1e-16 Score=123.41 Aligned_cols=112 Identities=22% Similarity=0.253 Sum_probs=80.7
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--Cccc----------------c-------cCccceeEEEEEECCEEEEEEEcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT----------------T-------IPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~----------------~-------~~~~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.+..+|+++|++++|||||+++++.. .... . ..++......+++.+..+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 56789999999999999999998531 1100 0 012222334567789999999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
|+.+|......+++.+|++++|+|+++.... ....++ ..... .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~-~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLM-EVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHH-HHHHh---cCCCEEEEEECcccc
Confidence 9998887777788999999999999764221 223333 33333 478999999999985
No 251
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=3.1e-16 Score=101.05 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=70.6
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc--cc--cCccceeEEEEEECCEEEEEEEcCCCCCc---------ccchhhccccc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~ 85 (181)
+|+++|.+|+|||||+|+|.+.... .. ..|.......+...+..+.++||||-... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22 23444444556678889999999995432 11123334789
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
|++++|+|.+++ .......+.+.++ .++|+++|+||
T Consensus 81 d~ii~vv~~~~~--~~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP--ITEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH--SHHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCC--CCHHHHHHHHHHh----cCCCEEEEEcC
Confidence 999999997662 1222223323332 57999999998
No 252
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.72 E-value=5.1e-17 Score=115.56 Aligned_cols=159 Identities=24% Similarity=0.310 Sum_probs=100.6
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEE-CCEEEEEEEcCCCCCccc-----chhhccccccEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGL 88 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~ 88 (181)
||+++|+.||||||+.+.+.++..+. -.+|...+...+.. ....+++||.||+..+-. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999998776542 24677777777764 677999999999865433 357778999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCc---ceEEEEccc
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQR---HWYIQSTCA 160 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~S~ 160 (181)
|||+|+.+.+ +.....++...+.. ...+++.+.++++|+|+..+...++..+... ...+... .+.++.||-
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999997443 44444444443332 1226788999999999875422222111111 0011111 478999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
.+ ..+-++|..+++.+..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TS-THHHHHHHHHHHTTST
T ss_pred cC-cHHHHHHHHHHHHHcc
Confidence 98 5799999999887653
No 253
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=2.2e-16 Score=122.86 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=101.1
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcC------Cc------cc-------ccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~~------~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (181)
.+..++|+++|+.++|||||+++|.+. .. .+ ...|.......++.++..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467899999999999999999999632 10 00 111333444455556788999999999888
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HhHH----HhhhCCCcc
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEI----TDKLGLHSL 148 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~~~----~~~~~~~~~ 148 (181)
..........+|++++|+|+.+... .........+.. .++| +|+++||+|+.+... .+.+ .+.+....+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~--~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM--PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7766666678999999999975422 222222223332 4677 578899999875322 1112 222211112
Q ss_pred cCcceEEEEcccc---CCCC-------hHHHHHHHHHHh
Q 030192 149 RQRHWYIQSTCAT---SGEG-------LYEGLDWLSNNI 177 (181)
Q Consensus 149 ~~~~~~~~~~S~~---~~~g-------v~~~~~~i~~~~ 177 (181)
....++++.+|+. +|.| +.++++.+.+.+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2235678888876 4555 677777776654
No 254
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.6e-16 Score=120.32 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=111.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccC---ccceeEEEEEE---CCEEEEEEEcCCCCCcccchhhccccccEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (181)
.+..-|.++|+...|||||+..+.+.......+ |..+--+.+.. ....+.++|||||+-|..+...-.+-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 356779999999999999999998877553322 22222233444 345899999999999999998888899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCccc----CcceEEEEccccCCC
Q 030192 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGE 164 (181)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~ 164 (181)
++|+++++.--.+ ..+ -+.+....+.|+++..||+|.++. ....+...+....+. .....++++||++|+
T Consensus 83 ILVVa~dDGv~pQ-TiE----AI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDGVMPQ-TIE----AINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCCcchh-HHH----HHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999997632111 111 122222268999999999999843 334444444333332 245789999999999
Q ss_pred ChHHHHHHHHHH
Q 030192 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 gv~~~~~~i~~~ 176 (181)
|+++|+..+.-.
T Consensus 157 Gi~eLL~~ill~ 168 (509)
T COG0532 157 GIDELLELILLL 168 (509)
T ss_pred CHHHHHHHHHHH
Confidence 999999987653
No 255
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=3.1e-16 Score=111.49 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCc--c----------cc-------cCccceeEEEEEE----------CCEEEEEEEcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEI--V----------TT-------IPTIGFNVETVEY----------KNISFTVWDVG 69 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~--~----------~~-------~~~~~~~~~~~~~----------~~~~~~i~D~~ 69 (181)
+|+++|+.++|||||+++|+...- . .. ..|+......+.+ .++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975321 0 00 0121111122222 27889999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
|+.+|......+++.+|++++|+|+.+....+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987655433 233333333 367999999999975
No 256
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=4.9e-16 Score=113.64 Aligned_cols=158 Identities=23% Similarity=0.232 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEE-ECCEEEEEEEcCCCCCcc-------cchhhccccccE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVE-YKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~ 87 (181)
.|.++|-||+|||||++.+...++. .. ..|...+...+. .....|.+-|.||--+.. .....++..|.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 6889999999999999999887643 11 122222222233 455679999999832211 113334567999
Q ss_pred EEEEEECCCccc---HHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 88 LIFVVDSNDRDR---VVEARDELHRMLN-EDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 88 ~i~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
++.|+|++..+. .++......++-. ...+.++|.++|+||+|+... +..+++...+.... .+...++ +|+.+
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--~~~~~~~-ISa~t 317 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--GWEVFYL-ISALT 317 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--CCCccee-eehhc
Confidence 999999985442 4444443333322 245567999999999996543 34444444443211 1111222 99999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030192 163 GEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 163 ~~gv~~~~~~i~~~~~~ 179 (181)
+.|++++...+.+.+.+
T Consensus 318 ~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 318 REGLDELLRALAELLEE 334 (369)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999998887654
No 257
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.69 E-value=6.6e-16 Score=115.59 Aligned_cols=134 Identities=26% Similarity=0.404 Sum_probs=103.4
Q ss_pred CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 030192 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (181)
||.|+....+...+..+.+||++|+...++.|.+++.+++++++|+|+++. ..+.+....+..++.+...
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 466777777888899999999999999999999999999999999999864 4677788888899888777
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHHHhhhCCCc---c--cCcceEEEEccccCCCChHHHHHHH
Q 030192 117 RDAVLLVFANKQDLPNA------------------MNAAEITDKLGLHS---L--RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~Dl~~~------------------~~~~~~~~~~~~~~---~--~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
.++|+++++||.|+... ...++....+...+ . .+..+..+.++|.+..+++.+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 88999999999997431 11122221111110 0 2356677789999999999999998
Q ss_pred HHHhhhc
Q 030192 174 SNNIASK 180 (181)
Q Consensus 174 ~~~~~~~ 180 (181)
.+.+..+
T Consensus 307 ~~~i~~~ 313 (317)
T cd00066 307 KDIILQN 313 (317)
T ss_pred HHHHHHH
Confidence 8877653
No 258
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.69 E-value=9e-16 Score=115.76 Aligned_cols=134 Identities=25% Similarity=0.415 Sum_probs=102.3
Q ss_pred CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 030192 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (181)
||.|+....+...+..+.+||.+|+...++.|.+++.+++++++|+|+++. ..+.+....+..++.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 466677777788889999999999999999999999999999999999863 4677888889999988777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHHHhhhC-----CCcc-cCcceEEEEccccCCCChHHHHHHH
Q 030192 117 RDAVLLVFANKQDLPNA-----------------MNAAEITDKLG-----LHSL-RQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~Dl~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
.++|+++++||.|+... ...+.....+. ...- .+..+..+.+||.+..++..+|+.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 88999999999998531 11112221111 1000 1245677789999999999999988
Q ss_pred HHHhhhc
Q 030192 174 SNNIASK 180 (181)
Q Consensus 174 ~~~~~~~ 180 (181)
.+.+..+
T Consensus 330 ~~~I~~~ 336 (342)
T smart00275 330 KDIILQR 336 (342)
T ss_pred HHHHHHH
Confidence 8776643
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=5.1e-16 Score=108.98 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=98.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEEEECCEEEEEEEcCCCCCccc-------c----hhhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY 81 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~----~~~~ 81 (181)
++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||-.+... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764321 2344455555666888999999999543321 1 1223
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcccCcceEEEE
Q 030192 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (181)
..+.|++++|+++.... ......+++...+... .-.+++++.|++|.......++...... ....+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 45789999999987621 1233333444433321 1257899999999765443333222111 0011122222222
Q ss_pred c-----cccCCCChHHHHHHHHHHhhh
Q 030192 158 T-----CATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 158 ~-----S~~~~~gv~~~~~~i~~~~~~ 179 (181)
. |+..+.+++++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2 256678899999999887765
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=2e-15 Score=112.54 Aligned_cols=77 Identities=27% Similarity=0.393 Sum_probs=54.0
Q ss_pred EEEEcCCCCChHHHHhhHhcCCcc-------cccCccceeEEEE-------------------EE-CCEEEEEEEcCCC-
Q 030192 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETV-------------------EY-KNISFTVWDVGGQ- 71 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~-------------------~~-~~~~~~i~D~~g~- 71 (181)
|+++|.||+|||||+|++++.... +..|+.+..+... .. ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987632 2244444433211 11 3468999999996
Q ss_pred ---CCcccch---hhccccccEEEEEEECCC
Q 030192 72 ---DKIRPLW---RHYFQNTQGLIFVVDSND 96 (181)
Q Consensus 72 ---~~~~~~~---~~~~~~~d~~i~v~d~~~ 96 (181)
+++..+. ...++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3344332 234789999999999973
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=1.8e-15 Score=123.86 Aligned_cols=114 Identities=19% Similarity=0.121 Sum_probs=84.1
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC-----c---c-------------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-----I---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-----~---~-------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (181)
.++..+|+++|++++|||||+++|+... . . ...-|.......+.+.+..++++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3566799999999999999999996421 0 0 01124444456677889999999999998
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
++...+...++.+|++++|+|+......+. ...+... .. .++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-DK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 888888888899999999999976533222 2223332 22 4689999999999875
No 262
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.66 E-value=9e-16 Score=119.37 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=103.2
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc---c---cCc--cceeEE---------------EEEE-----------
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---T---IPT--IGFNVE---------------TVEY----------- 58 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~---~~~--~~~~~~---------------~~~~----------- 58 (181)
..+-.++|+++|+..+|||||+.+|.+..... . .-| .|+... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34667899999999999999999998743211 1 111 111110 0000
Q ss_pred -----CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 59 -----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
....+.++|+||+++|.+........+|++++|+|+..........+.+. .+... .-.++|+++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCH
Confidence 02368999999999988777777789999999999986311111122222 22211 12568999999999764
Q ss_pred CCHhHHHhhhCC--CcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 134 MNAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
...++..+.+.. ........+++++||++|.|++++++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 322222221110 001124568999999999999999999986553
No 263
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.5e-15 Score=114.44 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=104.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccc----eeEEEEEECCEEEEEEEcCCCCCcc---------cchhhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDKIR---------PLWRHY 81 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~ 81 (181)
+..++|+++|+||+|||||+|.|.+.+..-..|..| .....++..++++.+.||+|-.+-. ......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 467999999999999999999999998654433333 3345677899999999999954311 112333
Q ss_pred cccccEEEEEEECC--CcccHHHHHHHHHHHHc-----CCCCCCCeEEEEEeCCCCCCCC-CHhH-HHhhhCCCcccCcc
Q 030192 82 FQNTQGLIFVVDSN--DRDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAM-NAAE-ITDKLGLHSLRQRH 152 (181)
Q Consensus 82 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~-----~~~~~~~piivv~nK~Dl~~~~-~~~~-~~~~~~~~~~~~~~ 152 (181)
.+.+|++++|+|+. ..++-..+.+.+...-. .+...+.|++++.||.|+.... +... ....... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 46799999999993 32222222232322211 1223457899999999987641 1111 0011111 111112
Q ss_pred eEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 153 WYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 153 ~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
-.+.++|+++++|++++...+...+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 235569999999999999888876543
No 264
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=4.4e-15 Score=121.55 Aligned_cols=114 Identities=17% Similarity=0.077 Sum_probs=81.9
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcC--Cc------c-------------cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EI------V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------~-------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (181)
.++-.+|+++|++|+|||||+++|+.. .. . ...-|.......+.+.+..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 456679999999999999999999631 10 0 00113333345677789999999999998
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
++.......++.+|++++|+|+...-..+. ...+..... .++|.++++||+|+.+
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 877777777889999999999865433222 223333333 4688999999999874
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6e-16 Score=115.79 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=102.1
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC----------------------c---------c---cccCccceeEEEEEEC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE----------------------I---------V---TTIPTIGFNVETVEYK 59 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~----------------------~---------~---~~~~~~~~~~~~~~~~ 59 (181)
.+..++++++|+..+|||||+-+|+.+- + . +..-|+...+..++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3567999999999999999999996421 0 0 0112455555667778
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc---cH-----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV-----VEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~-----~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
.+.+.++|+||+.+|-........++|+.|+|+|+.+.+ ++ ..-...+...+. -..+|+++||+|+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v 158 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLV 158 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEccccc
Confidence 899999999999998888888888999999999998653 11 111112222222 24578999999998
Q ss_pred CC--CCHhH----HHhhhCCCcccCcceEEEEccccCCCChHH
Q 030192 132 NA--MNAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
Q Consensus 132 ~~--~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~ 168 (181)
+- ...++ +...+....+...+++++++|+..|.|+.+
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 62 12222 222222333344468899999999999853
No 266
>PRK12740 elongation factor G; Reviewed
Probab=99.64 E-value=7.8e-15 Score=120.06 Aligned_cols=105 Identities=19% Similarity=0.152 Sum_probs=78.1
Q ss_pred EcCCCCChHHHHhhHhcCCc--------------c-------cccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhc
Q 030192 23 VGLDAAGKTTILYKLKLGEI--------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
Q Consensus 23 ~G~~~~GKSsli~~l~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (181)
+|++|+|||||+++|+...- . ....|++.....+.+.++.+++|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999954210 0 01224445556677889999999999998888888888
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
++.+|++++|+|++........ ..|..... .++|+++++||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8999999999999876554332 33333322 4689999999999874
No 267
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=2.1e-15 Score=107.48 Aligned_cols=165 Identities=18% Similarity=0.268 Sum_probs=106.0
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc---cCcccee-EEEEEECCEEEEEEEcCCCCC-------cccchh
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQDK-------IRPLWR 79 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~ 79 (181)
++.....++|+++|.+|+||||+||++++....+. ..+.... +....++...+.+||+||-.+ +++...
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 34457889999999999999999999997553321 1122211 222334557899999999554 666678
Q ss_pred hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHHhhh-C--
Q 030192 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEITDKL-G-- 144 (181)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~-~-- 144 (181)
.++.+.|.+++++++.++.- .--...+.+++... .+.++++++|.+|...+- ..++..+.. +
T Consensus 113 d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 88899999999999976532 11122233333321 248899999999976431 111111100 0
Q ss_pred CCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
..++ +.-.+++..|...+.|++++...++..+..
T Consensus 190 ~~~~-q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 190 GRLF-QEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHH-hhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0111 123356677889999999999999987643
No 268
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.5e-14 Score=111.50 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=113.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc---cCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (181)
.+..-|.++|+...|||||++.|.+...... .-|..+--+.+.. .+..+.+.|||||.-|..+...-.+-+|.+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4777899999999999999999988775432 2233332233332 56789999999999999999988899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc----cCcceEEEEccccCCCCh
Q 030192 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~gv 166 (181)
|+.+.+.-- ..-.+.+++....+.|+|+.+||+|.+.. ..+.+.+.+-...+ -..+++++++||++|.|+
T Consensus 231 VVAadDGVm-----pQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVM-----PQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCcc-----HhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 999976321 11222333444478999999999998754 44555555533333 235789999999999999
Q ss_pred HHHHHHHHHH
Q 030192 167 YEGLDWLSNN 176 (181)
Q Consensus 167 ~~~~~~i~~~ 176 (181)
+.+-+.+.-.
T Consensus 305 ~~L~eaill~ 314 (683)
T KOG1145|consen 305 DLLEEAILLL 314 (683)
T ss_pred HHHHHHHHHH
Confidence 9988877643
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.62 E-value=8.7e-16 Score=96.61 Aligned_cols=138 Identities=21% Similarity=0.224 Sum_probs=94.5
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCC----CCCcccchhhccccccEEEEEEEC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG----QDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
+++++|..|+|||||.+.+.+.... +..|..+ ++.+ =-.+|||| +.+++.........+|.+++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hccccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 7899999999999999999987753 1222222 1111 02579999 344444455566789999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
+++++. ....+..+ ..+|+|-+++|.|+++.+..+..++.+.....+ ++|++|+.++.|+++++.++.
T Consensus 75 nd~~s~--f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCcccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHHH
Confidence 887553 22222222 346699999999999755554444444333222 699999999999999999886
Q ss_pred HH
Q 030192 175 NN 176 (181)
Q Consensus 175 ~~ 176 (181)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 53
No 270
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.60 E-value=1.3e-14 Score=106.63 Aligned_cols=113 Identities=15% Similarity=0.222 Sum_probs=70.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccc-----------cCccceeEE--EEEECC--EEEEEEEcCCCCCccc----
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRP---- 76 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~---- 76 (181)
-.++|+++|++|+|||||+|++.+..+... .+|.+.... .+...+ +.+.+|||||-.+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999998775422 223333332 233333 6799999999432211
Q ss_pred ----------------------chhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 77 ----------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 77 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.....+. .+|+++|+++.+. ..+......+...+.. ++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence 0101222 5788888888764 2232332222233332 589999999999865
Q ss_pred C
Q 030192 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 158 ~ 158 (276)
T cd01850 158 P 158 (276)
T ss_pred H
Confidence 3
No 271
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.59 E-value=2.5e-15 Score=114.60 Aligned_cols=173 Identities=15% Similarity=0.161 Sum_probs=117.8
Q ss_pred HHHHHHhhh--cccccEEEEEcCCCCChHHHHhhHhcCCcc-c-c-cCccceeEEEEEECCEEEEEEEcCCCCCcc----
Q 030192 5 FTKLFSRLF--AKKEMRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKNISFTVWDVGGQDKIR---- 75 (181)
Q Consensus 5 ~~~~~~~~~--~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---- 75 (181)
..+.+.+++ .....+++++|-||+|||||+|.+...... . + .+|.+.-...+.+.-..++++||||-.+..
T Consensus 154 Vrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdr 233 (620)
T KOG1490|consen 154 VRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDR 233 (620)
T ss_pred HHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhh
Confidence 345566666 467889999999999999999999876643 1 1 345555455566666789999999943211
Q ss_pred cc-----hhhccccccEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcc
Q 030192 76 PL-----WRHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148 (181)
Q Consensus 76 ~~-----~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~ 148 (181)
+. ......--.+++|+.|++..+ |.......+..+-. -..++|+|+|+||+|+-.++.+.+-.+.+-....
T Consensus 234 N~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 234 NIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTII 311 (620)
T ss_pred hHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHH
Confidence 10 111112356789999998765 45666666666533 3358999999999998877655544443322222
Q ss_pred cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
...+++++++|+.+.+||-++-...++.++.
T Consensus 312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 312 DDGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred hccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 2334689999999999999988888877653
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=7.7e-14 Score=107.02 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccc-c------cCccceeEEEE-------------------E-ECCEEEEEEEcCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVT-T------IPTIGFNVETV-------------------E-YKNISFTVWDVGG 70 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~------~~~~~~~~~~~-------------------~-~~~~~~~i~D~~g 70 (181)
++|+++|.||+|||||+|++++..... . .|+.+...... . .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876531 1 23333322110 0 1236789999999
Q ss_pred C----CCcccchhh---ccccccEEEEEEECC
Q 030192 71 Q----DKIRPLWRH---YFQNTQGLIFVVDSN 95 (181)
Q Consensus 71 ~----~~~~~~~~~---~~~~~d~~i~v~d~~ 95 (181)
- .....+-.. .++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 223333223 378999999999996
No 273
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=9.5e-14 Score=109.92 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=69.6
Q ss_pred EEEEEEEcCCCCCc-----ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030192 61 ISFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
Q Consensus 61 ~~~~i~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 135 (181)
..+.++||||-... .......+..+|++++|+|.....+... ..+...++... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 45789999996432 2223446789999999999976433322 22333333311 1359999999999865322
Q ss_pred --HhHHHhhhCCC--cccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 136 --AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
.+.+....... ...-.-..++++||++|.|++++++.+..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33333322100 00001225889999999999999998876
No 274
>PRK13768 GTPase; Provisional
Probab=99.56 E-value=1.6e-14 Score=105.00 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=73.9
Q ss_pred EEEEEEEcCCCCCc---ccchhhcccc-----ccEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 61 ISFTVWDVGGQDKI---RPLWRHYFQN-----TQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 61 ~~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
..+.+||+||+.+. +..+..+.+. .+++++|+|+........ ...++........ .++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 36899999997553 3333323322 899999999965443322 2222222211111 479999999999998
Q ss_pred CCCCHhHHHhhhCC-----------------------CcccC--cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 132 NAMNAAEITDKLGL-----------------------HSLRQ--RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 132 ~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
+..+.++....+.. ..+++ ...+++++|++++.|++++++++.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76544444333321 00111 2247899999999999999999988764
No 275
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.56 E-value=7.3e-14 Score=103.98 Aligned_cols=134 Identities=26% Similarity=0.464 Sum_probs=102.6
Q ss_pred cCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc----------cHHHHHHHHHHHHcCCC
Q 030192 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDE 115 (181)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~ 115 (181)
.||.|+....+...+..+.++|.+||...++.|.+++.+++++++|+++++-+ .+.+....+..++.+..
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 45888888899999999999999999999999999999999999999987422 34555667888899888
Q ss_pred CCCCeEEEEEeCCCCCCC-----------------CCHhHHHhhhC-----CCcccCcceEEEEccccCCCChHHHHHHH
Q 030192 116 LRDAVLLVFANKQDLPNA-----------------MNAAEITDKLG-----LHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 116 ~~~~piivv~nK~Dl~~~-----------------~~~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
..+.++|+++||.|+..+ ...++....+. +..-....+.+..++|.+..+|+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 889999999999999641 11222222111 11111145667778999999999999998
Q ss_pred HHHhhh
Q 030192 174 SNNIAS 179 (181)
Q Consensus 174 ~~~~~~ 179 (181)
.+.+..
T Consensus 340 ~d~Ii~ 345 (354)
T KOG0082|consen 340 TDTIIQ 345 (354)
T ss_pred HHHHHH
Confidence 887754
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.54 E-value=7.6e-14 Score=114.77 Aligned_cols=113 Identities=21% Similarity=0.116 Sum_probs=79.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC---------------Cccc----ccCccceeE----EEEEECCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNV----ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~---------------~~~~----~~~~~~~~~----~~~~~~~~~~~i~D~~g~ 71 (181)
++..+|+++|+.++|||||+++|+.. .+.. ...|+.... ..+.+.++.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45679999999999999999999752 1111 111333222 124567899999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.+|......+++.+|++++|+|+......+. ...+..... .++|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888888999999999999976322221 222322222 3577889999999864
No 277
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.53 E-value=4.9e-14 Score=105.31 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=69.6
Q ss_pred CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030192 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--- 135 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--- 135 (181)
.++.+.++||+|..+-... ....+|.+++|.+....+.++....-..+ ..-++|+||+|+.....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E---------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIME---------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhh---------hhheEEeehhcccchhHHHH
Confidence 3578999999997633322 45679999999875445555443321111 22389999999876432
Q ss_pred -HhHHHhhhCCCccc--CcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 136 -AAEITDKLGLHSLR--QRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 136 -~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
..++...+....-+ .+..+++.+||+++.|++++++.+.+.+
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 22344444332111 2334789999999999999999998764
No 278
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.52 E-value=3.6e-14 Score=102.01 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=57.9
Q ss_pred EEEEEEcCCCCCcccchhhcc--------ccccEEEEEEECCCcccHHHHHH----HHHHHHcCCCCCCCeEEEEEeCCC
Q 030192 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRDRVVEARD----ELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~----~~~~~~~~~~~~~~piivv~nK~D 129 (181)
.+.++|||||.++...+.... ...-++++++|+....+...... .....++ .+.|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 689999999987655444333 34567888999865443222222 2222333 4799999999999
Q ss_pred CCCCC---------C-----------Hh----HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 130 LPNAM---------N-----------AA----EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 130 l~~~~---------~-----------~~----~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+.+.. . .. ++.+.+... ..-..++.+|+++++|+++++..+.+++
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~---~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF---GLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC---SSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc---CCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98621 0 01 111111111 1112688999999999999999887764
No 279
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.52 E-value=6.6e-14 Score=99.35 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=93.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cch----hhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLW----RHY 81 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~----~~~ 81 (181)
++|+++|.+||||||++|.+++...... ..|...........+..+.++||||-.+.. ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999998875422 225555566667889999999999943211 111 122
Q ss_pred cccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---C-CcccCcceEEE
Q 030192 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---L-HSLRQRHWYIQ 156 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 156 (181)
....|++++|++..... .-.....++..++....+ .-++||.|..|...+...++..+... + ...+.++-.|.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 35699999999997432 223444556666554222 35888899998766554433322110 0 11122232344
Q ss_pred Ecccc------CCCChHHHHHHHHHHhhh
Q 030192 157 STCAT------SGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 157 ~~S~~------~~~gv~~~~~~i~~~~~~ 179 (181)
..+.+ ....+.++++.+-+.+.+
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 44444 234578888877776654
No 280
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=2.8e-13 Score=113.55 Aligned_cols=144 Identities=22% Similarity=0.180 Sum_probs=89.5
Q ss_pred CChHHHHhhHhcCCcccccC---ccceeEEEEEEC------------------CEEEEEEEcCCCCCcccchhhcccccc
Q 030192 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 28 ~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~------------------~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (181)
++||||++.+.+.......+ |..+-...+... .-.+.+|||||++.|..........+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998776543211 222211222211 113899999999999888777788899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------------HhHHHh-------
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------------------AAEITD------- 141 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------------~~~~~~------- 141 (181)
++++|+|+++.-.-+ .......+.. .++|+++++||+|+..... ..++..
T Consensus 552 ivlLVVDa~~Gi~~q--T~e~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFKPQ--TIEAINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCCHh--HHHHHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999998631111 1111122222 3689999999999864211 111110
Q ss_pred hhCCCcc----------cCcceEEEEccccCCCChHHHHHHHHHH
Q 030192 142 KLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 142 ~~~~~~~----------~~~~~~~~~~S~~~~~gv~~~~~~i~~~ 176 (181)
.+....+ ....++++++||++|+|+++++..+...
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0111111 1246789999999999999999887643
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=2e-13 Score=97.69 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=85.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (181)
.....|+++|++|+|||||++.+.+..... .....+. +......+..+.++|+||.. .. .....+.+|++++|+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence 456789999999999999999998653211 1111221 11233467789999999864 22 2334578999999999
Q ss_pred CCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHHhhhCCCcc--cCcceEEEEccccCCCCh
Q 030192 94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEITDKLGLHSL--RQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gv 166 (181)
++...... ...+...+.. .+.| +++|+||+|+.+... .++....+...+. .-.+.+++.+||++...+
T Consensus 113 a~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 113 ASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred cCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 97543322 2223333332 3466 456999999874321 2222222211111 012357889999986443
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.50 E-value=6.7e-13 Score=93.12 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=64.3
Q ss_pred EEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhH
Q 030192 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE 138 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~ 138 (181)
....++++.|..-.....+ .-+|.++.|+|+.+.++... .....+. ..-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGIT------RSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHhh------hccEEEEEhhhccccccccHHH
Confidence 4667888888422222222 12688999999976544321 1111111 123899999999853 23333
Q ss_pred HHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
+.+..... +.+.+++++|+++|+|++++++++.+.+.-
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 33333221 234579999999999999999999987653
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=4.7e-13 Score=96.81 Aligned_cols=117 Identities=10% Similarity=0.102 Sum_probs=75.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCccc---c-------hhh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------WRH 80 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~~~ 80 (181)
...++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||-.+... . ...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 5779999999999999999999999765322 2233334444456778999999999654410 1 122
Q ss_pred ccc--cccEEEEEEECCCcc-cHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 81 YFQ--NTQGLIFVVDSNDRD-RVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 81 ~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
++. ..|++++|..++... ... .+.+.+.+.+.... -.++++|.||+|...+
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 332 578888887665321 222 34444444443211 1469999999998654
No 284
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.49 E-value=2e-13 Score=99.51 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=110.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE----CCEEEEEEEcCCCCCcccchhhccccc----cE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT----QG 87 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~ 87 (181)
..-+|+++|+.|+||||||.++.+.+........++.+-.+.. +-.++.+|-..|+..+..+....+... -.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 4579999999999999999999988844444445554444433 335789999999888877776665532 46
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHcCC-----------------------------------------------------
Q 030192 88 LIFVVDSNDRDRVVEARDELHRMLNED----------------------------------------------------- 114 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------------------------------------- 114 (181)
+|++.|+++|+.+.+..+.|...+.++
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 778899999987766555444332110
Q ss_pred --------CCCCCeEEEEEeCCCCCCCCCHh--------HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 115 --------ELRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 115 --------~~~~~piivv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
..-++|++||+||+|...-.+.+ ++-+..-..|.-+.+...+.+|+|...|++-+..+|+..++
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 00235699999999985421111 11111112222345677889999999999999999998764
No 285
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.48 E-value=5.8e-13 Score=101.21 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=112.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC--cccc-------------cCccceeE----EEEEECCEEEEEEEcCCCCCccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRP 76 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~-------------~~~~~~~~----~~~~~~~~~~~i~D~~g~~~~~~ 76 (181)
.-.+|+|+.+...|||||++.|+.+. |.+. ...-|++. ..+.+.++.++++|||||.+|-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34689999999999999999997643 2111 11222332 34678899999999999999999
Q ss_pred chhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-----cccCc
Q 030192 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----SLRQR 151 (181)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~ 151 (181)
.....+.=.|++++++|+... ......-.+...+. .+.+-|+|+||+|.++....+-+.+.+.+. .-.+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999752 22333444444444 366678999999998765433333333211 12457
Q ss_pred ceEEEEccccCCC----------ChHHHHHHHHHHhhh
Q 030192 152 HWYIQSTCATSGE----------GLYEGLDWLSNNIAS 179 (181)
Q Consensus 152 ~~~~~~~S~~~~~----------gv~~~~~~i~~~~~~ 179 (181)
+++++..|+..|. ++..+|+.|++.+..
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 8888889998864 578888888887643
No 286
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.47 E-value=2.7e-13 Score=96.68 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=94.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC------c--ccccCcc---------------------ceeEEEEE--------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTI---------------------GFNVETVE-------- 57 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~------~--~~~~~~~---------------------~~~~~~~~-------- 57 (181)
.+...|+|.|+||+|||||++.|...- . ....|+. +.-+..+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 377899999999999999999995311 0 0111111 11112221
Q ss_pred ------------ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030192 58 ------------YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
Q Consensus 58 ------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~ 125 (181)
..++.+.+++|.|--+-+-. ...-+|.+++|....-.+..+..+.-+.++.. ++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEE
Confidence 13577899999875433322 33569999999999878888777777777755 9999
Q ss_pred eCCCCCCCC-CHhHHHhhhCCCc--ccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192 126 NKQDLPNAM-NAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 126 nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gv~~~~~~i~~~ 176 (181)
||.|..... ...++...+.+.. ...+..+++.|||.++.|++++++.|.+.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 999965432 2334455444322 23355689999999999999999988763
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.46 E-value=3.3e-13 Score=99.31 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=100.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc------------c------------------------cccCccceeEEEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V------------------------TTIPTIGFNVETVEY 58 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~------------------------~~~~~~~~~~~~~~~ 58 (181)
+..++++.+|+..-||||||-||+.+.- . +..-|+...+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568999999999999999999976320 0 011244455666677
Q ss_pred CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CH
Q 030192 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NA 136 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~ 136 (181)
++.+|.+-|||||++|.+-...-...||+.|+++|+ +..+.+....-.-+.... .-..+++.+||+||.+-. ..
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 889999999999999988777777889999999999 545544433322222211 124578889999998732 23
Q ss_pred hHHHhhhCCCccc---CcceEEEEccccCCCChH
Q 030192 137 AEITDKLGLHSLR---QRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 137 ~~~~~~~~~~~~~---~~~~~~~~~S~~~~~gv~ 167 (181)
+++...+. .++. -....++++||..|.||-
T Consensus 160 ~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYL-AFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHH-HHHHHcCCCcceEEechhccCCccc
Confidence 34443332 1121 123478999999999873
No 288
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.46 E-value=3.3e-12 Score=94.07 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=73.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccc--eeEEEEEECCEEEEEEEcCCCCCcccc-------hhhcc-
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL-------WRHYF- 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~- 82 (181)
...++|+++|.+|+||||++|++++.... +..++.+ .........+..+.++||||..+.... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999987642 2222222 222333457889999999996643221 11111
Q ss_pred -ccccEEEEEEECCC--cccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 83 -QNTQGLIFVVDSND--RDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 -~~~d~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
...|++++|.+++. .... ..+.+.+...+...- -.++|++.|+.|...
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 25899999966542 2222 333444444443221 246899999999764
No 289
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.2e-13 Score=103.71 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=102.9
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcCC----------------------c------cc------ccCccceeEEE
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGE----------------------I------VT------TIPTIGFNVET 55 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~----------------------~------~~------~~~~~~~~~~~ 55 (181)
.+..++..++++++|+..+|||||+.+++..- | .. ..-|+......
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 34555678899999999999999999996410 0 00 01133333444
Q ss_pred EEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc---ccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVV--EARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
++-....+.+.|+||+.+|..-.......+|+.++|+|++.. .+|. ....-...+++.. .-...||.+||+|+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~ 327 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDL 327 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccc
Confidence 555678899999999999988777777889999999999732 1121 1111222222221 13568899999998
Q ss_pred CC--CCCHhHHHhhh-----CCCcccCcceEEEEccccCCCChH
Q 030192 131 PN--AMNAAEITDKL-----GLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 131 ~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
.+ ....+++...+ ....+....+.+++||...|+|+-
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 76 22333444333 233445567789999999999974
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.42 E-value=2.4e-12 Score=91.96 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=74.3
Q ss_pred CEEEEEEEcCCCCCc------ccchhhcc--ccccEEEEEEECC---CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192 60 NISFTVWDVGGQDKI------RPLWRHYF--QNTQGLIFVVDSN---DRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~------~~~~~~~~--~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.....++||||+-+. ..+....+ .-.-+++||+|.. ++..|.....+-..++.. .+.|.|++.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 356889999997431 11111111 2356777888864 455665555566666665 578999999999
Q ss_pred CCCCCCCHhHHHhh-------hCC--Ccc--------------cCcceEEEEccccCCCChHHHHHHHHHHhhh
Q 030192 129 DLPNAMNAAEITDK-------LGL--HSL--------------RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 129 Dl~~~~~~~~~~~~-------~~~--~~~--------------~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~ 179 (181)
|+.+.....++... +.. ..+ .-.+...+-+|+.+|.|.+++|..+...+.+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 99875432222221 110 000 0135567789999999999999999887654
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=99.42 E-value=1.3e-12 Score=109.01 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=79.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc------------cccc-------CccceeEEEEEEC----------CEEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEYK----------NISFTV 65 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~~~~-------~~~~~~~~~~~~~----------~~~~~i 65 (181)
++..+|+++|+.++|||||+++|+...- .+.. .|+......+.+. +..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 5567999999999999999999976321 0000 0111111222232 577999
Q ss_pred EEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
+||||+.+|.......++.+|++++|+|+...-..+ ....|..... .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999888888889999999999997643322 2234444443 468999999999986
No 292
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.42 E-value=1.8e-12 Score=97.84 Aligned_cols=156 Identities=13% Similarity=0.126 Sum_probs=79.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc-cCcc-----ceeEEEEEECC-EEEEEEEcCCCCCcccchhh-----cc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTI-----GFNVETVEYKN-ISFTVWDVGGQDKIRPLWRH-----YF 82 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~-----~~ 82 (181)
...++|+|+|++|+|||||||.|.+-...+. .+.+ ......+.... -++.+||.||.......... -+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5779999999999999999999976332111 1111 12223333333 36999999995322222222 24
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC--C-----CCC------CHhHHHhhhCCCccc
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL--P-----NAM------NAAEITDKLGLHSLR 149 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl--~-----~~~------~~~~~~~~~~~~~~~ 149 (181)
...|.+|++.+- .+....-++...+.. .++|+++|-||+|. . .+. ..+++++.. ...++
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c-~~~L~ 184 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC-LENLQ 184 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH-HHHHH
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH-HHHHH
Confidence 579987776653 355555555555554 58999999999995 1 111 122222211 11111
Q ss_pred C---cceEEEEccccC--CCChHHHHHHHHHHhh
Q 030192 150 Q---RHWYIQSTCATS--GEGLYEGLDWLSNNIA 178 (181)
Q Consensus 150 ~---~~~~~~~~S~~~--~~gv~~~~~~i~~~~~ 178 (181)
. ...++|-+|+.+ ..+...+.+.+.+.+.
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1 344688899887 3456777777766553
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=2.1e-12 Score=107.80 Aligned_cols=113 Identities=19% Similarity=0.121 Sum_probs=80.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCc------------cccc-------CccceeEEEEEE----------------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY---------------- 58 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~~~~-------~~~~~~~~~~~~---------------- 58 (181)
.++..+|+++|+.++|||||+++|+...- .... .|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45677999999999999999999975321 0000 121211122222
Q ss_pred CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
.+..++++||||+.+|.......++.+|++++|+|+...-..+ ....|..... .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 2678899999999999988888889999999999997643332 2234444444 478999999999987
No 294
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.41 E-value=3.5e-12 Score=92.30 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=100.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCc--------ccccCcccee---------------------EEEE----------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFN---------------------VETV---------- 56 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~--------~~~~~~~~~~---------------------~~~~---------- 56 (181)
+...|+|.|.||+|||||+..|...-. ....|+..++ +..+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 667999999999999999999953110 0111111110 0111
Q ss_pred ----------EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192 57 ----------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 57 ----------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+-.++.+.|++|.|--+.+.. ...-+|.+++|.-..-.+.++..+.-+.++.. |+|+|
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vIN 197 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVIN 197 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEe
Confidence 113577889999875444432 23459999999888777888888887777755 89999
Q ss_pred CCCCCCCC-CHhHHHhhhCCCc--c--cCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 127 KQDLPNAM-NAAEITDKLGLHS--L--RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 127 K~Dl~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
|.|....+ ...++...+++.. . ..+..+++.+||.+|+|++++++.+.+..
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 99955432 2334444444332 2 33566899999999999999999988754
No 295
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.40 E-value=3.7e-12 Score=90.13 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=89.5
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcCCc------------c-cc----cCccceeEEEEE---------------
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-TT----IPTIGFNVETVE--------------- 57 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~------------~-~~----~~~~~~~~~~~~--------------- 57 (181)
..+.+.....|.++|+.|+|||||++++..... . .. ....+.....+.
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence 345556788999999999999999999965310 0 00 001111111110
Q ss_pred -----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 58 -----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 58 -----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
..+..+.++|+.|.-... ..+.-..+..+.|+|+.+.+.... . .... ...|.++++||+|+.+
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAE 162 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccc
Confidence 124578888888831111 111123566677888875433211 1 1111 2466799999999975
Q ss_pred CC--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 133 AM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
.. ...+..+.+... ....+++++|+++|.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 32 222333322211 1345799999999999999999998753
No 296
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.39 E-value=2.4e-12 Score=99.32 Aligned_cols=130 Identities=25% Similarity=0.411 Sum_probs=96.4
Q ss_pred ccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCC----------cccHHHHHHHHHHHHcCCCC
Q 030192 48 TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 48 ~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (181)
|.|+....+.. ....+.++|++|+...++.|.+++.++++++||+++++ ...+.+....|..++.....
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 56677777888 89999999999999999999999999999999999863 23477888899999998888
Q ss_pred CCCeEEEEEeCCCCCCC--------------------CCHhHHHhhhCCCc---c--cC--cceEEEEccccCCCChHHH
Q 030192 117 RDAVLLVFANKQDLPNA--------------------MNAAEITDKLGLHS---L--RQ--RHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 117 ~~~piivv~nK~Dl~~~--------------------~~~~~~~~~~~~~~---~--~~--~~~~~~~~S~~~~~gv~~~ 169 (181)
.+.|+||++||.|+... ...+.....+...+ . .. ..+.+..++|.+..++..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 89999999999997421 11122222111111 1 11 5567778999999999999
Q ss_pred HHHHHHHh
Q 030192 170 LDWLSNNI 177 (181)
Q Consensus 170 ~~~i~~~~ 177 (181)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99887653
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.36 E-value=5.3e-12 Score=104.24 Aligned_cols=113 Identities=21% Similarity=0.135 Sum_probs=77.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc--c----------ccc-------CccceeEEEE----EECCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--V----------TTI-------PTIGFNVETV----EYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~----------~~~-------~~~~~~~~~~----~~~~~~~~i~D~~g~ 71 (181)
++..+|+++|+.++|||||+++++...- . +.. -|+......+ ...+..++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4667999999999999999999975320 0 000 0222222222 225788999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.+|.......++.+|++++|+|+...-.. .....|..... .+.|.|+++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 99988888888999999999998754322 22233333333 2467799999999763
No 298
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.35 E-value=6.7e-12 Score=90.85 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCcccchhhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCccc
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR 149 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 149 (181)
+++..+...+++++|.+++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+..... +..+. ++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~-----~~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDI-----YR 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHH-----HH
Confidence 667777778899999999999999877 78888777764432 579999999999997543222 22222 22
Q ss_pred CcceEEEEccccCCCChHHHHHHHHH
Q 030192 150 QRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
..+.+++++||++|.|++++|..+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 34568999999999999999987754
No 299
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.35 E-value=2e-11 Score=91.02 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=65.2
Q ss_pred CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030192 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE 138 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~ 138 (181)
.++.+.++||+|..... ......+|.++++.+.... .++......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36789999999854222 2245668888888554322 2222222222 2467799999999876543222
Q ss_pred HHhhh--CCC----cccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 139 ITDKL--GLH----SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 139 ~~~~~--~~~----~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
....+ .+. ....+..+++.+|++++.|++++++++....
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 111 1112334689999999999999999998754
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=99.35 E-value=2e-11 Score=93.08 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=55.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEEC-----------------CEEEEEEEcCCCCCc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~ 74 (181)
...++|+++|.||+|||||+|++.+.... ...| |...+...+... +..+.++|+||-...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 56789999999999999999999876643 2222 334444434332 335899999994321
Q ss_pred -------ccchhhccccccEEEEEEECC
Q 030192 75 -------RPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 75 -------~~~~~~~~~~~d~~i~v~d~~ 95 (181)
.......++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 112233457899999999974
No 301
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.6e-11 Score=93.00 Aligned_cols=153 Identities=18% Similarity=0.080 Sum_probs=108.3
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc---c---ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV---T---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~---~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
.|+-.|+-..|||||+..+.+.... + ...|+...+.....++..+.++|+||++++-.-........|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 5788899999999999999886543 1 233555556666667779999999999999888777788999999999
Q ss_pred ECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 93 DSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 93 d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
+.++.-.. ..-.-...+.+. ....++|+||+|..+++..++..+..... ..-...++|.+|+++|.|++++.+
T Consensus 82 ~~deGl~~qtgEhL~iLdllg-----i~~giivltk~D~~d~~r~e~~i~~Il~~-l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLLG-----IKNGIIVLTKADRVDEARIEQKIKQILAD-LSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHHHHHHHHhcC-----CCceEEEEeccccccHHHHHHHHHHHHhh-cccccccccccccccCCCHHHHHH
Confidence 99642111 111112223322 23469999999998865444433322211 113345678999999999999999
Q ss_pred HHHHHh
Q 030192 172 WLSNNI 177 (181)
Q Consensus 172 ~i~~~~ 177 (181)
+|.+..
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 999877
No 302
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.34 E-value=1.7e-11 Score=95.57 Aligned_cols=162 Identities=14% Similarity=0.181 Sum_probs=103.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEE--EEE----CCEEEEEEEcCCCCCcccchhhcccc----c
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQN----T 85 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (181)
...+|+|+|..++|||||+.+|.+..- ..++.+..|.. +.. +..++.+|...|...+..+....+.. -
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 456999999999999999999976543 33444544443 322 22478999999877777766555542 3
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH-----------------------------Hc---CC-------------------
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRM-----------------------------LN---ED------------------- 114 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~-----------------------------~~---~~------------------- 114 (181)
-.+|+|+|.+.|+.+.+..+.|... .. ..
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 5677899999998764333222111 00 00
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCCCHh--------HHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHH
Q 030192 115 -----------ELRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 115 -----------~~~~~piivv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
...++|++||++|+|.....+.+ ++.+.+-..+.-++|...+.||++...+++.++.+|..
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 00136899999999975421111 11111112222346777888999999999999999888
Q ss_pred Hhhh
Q 030192 176 NIAS 179 (181)
Q Consensus 176 ~~~~ 179 (181)
.+..
T Consensus 262 ~l~~ 265 (472)
T PF05783_consen 262 RLYG 265 (472)
T ss_pred Hhcc
Confidence 7653
No 303
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.32 E-value=2.1e-12 Score=83.74 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=76.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCccccc--CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+|++++|..|+|||+|+.++....+.... ++.+ +......+.+.++.+++||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 48999999999999999999777664221 2322 3333455667899999999999
Q ss_pred CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChH
Q 030192 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~ 167 (181)
+.+++... |...+. .....+.|.++++||.|+.+.. ++...... .++++|+++|.|+.
T Consensus 58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~~~---~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEEER---QVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHhhC---cCCHHHHH--------HHHHHhCCCcchhh
Confidence 88877554 443333 2233568899999999974322 11111111 24578999999884
No 304
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.32 E-value=8.3e-11 Score=91.73 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=108.6
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCccc-----ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhcccccc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (181)
-..++.+++.++|+.++|||.+++.+.+..+.. ..+....+...+.++...+.+-|.+-. ........- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 444688999999999999999999999976553 222333333444456667778887764 222221111 6799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
+++++||++++.++......+...... ...|+++|++|+|+.+. ....++++.+++.. -+..|++
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~ 567 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSK 567 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccC
Confidence 999999999999998888877665444 57999999999998652 24578888888763 3356777
Q ss_pred CCCChHHHHHHHHHHhh
Q 030192 162 SGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~~~ 178 (181)
..-. .++|..|+.+..
T Consensus 568 ~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 568 TLSS-NELFIKLATMAQ 583 (625)
T ss_pred CCCC-chHHHHHHHhhh
Confidence 5222 788888876543
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.31 E-value=3.7e-11 Score=82.19 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=42.5
Q ss_pred EEEEEEcCCCC----CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192 62 SFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 62 ~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
.+.++||||-. .....+..++..+|++++|.+++...+-..... +...... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence 48899999953 234567888899999999999987555443333 3333333 234489999984
No 306
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.30 E-value=2.8e-10 Score=80.63 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=61.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCEEEEEEEcCCCC------Cc-ccchhhccccc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQD------KI-RPLWRHYFQNT 85 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~-~~~~~~~~~~~ 85 (181)
..-+|+++|-|.+|||||+..+..-... ++ ..|.......+.+.+.++++.|.||-- +. .+......+.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4569999999999999999999764422 11 344445555677889999999999821 11 22344556889
Q ss_pred cEEEEEEECCCccc
Q 030192 86 QGLIFVVDSNDRDR 99 (181)
Q Consensus 86 d~~i~v~d~~~~~s 99 (181)
|.++.|.|++..+.
T Consensus 141 DlilMvLDatk~e~ 154 (364)
T KOG1486|consen 141 DLILMVLDATKSED 154 (364)
T ss_pred cEEEEEecCCcchh
Confidence 99999999986543
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=2.4e-10 Score=86.84 Aligned_cols=113 Identities=22% Similarity=0.217 Sum_probs=74.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC----Ccc-------------cc--c---CccceeE---EEEE-----ECCEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT--I---PTIGFNV---ETVE-----YKNISFT 64 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~-------------~~--~---~~~~~~~---~~~~-----~~~~~~~ 64 (181)
...+.|+++|+.++||||||++|++. ... +. . .|++..+ ..++ +-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 57799999999999999999999876 221 11 1 2333333 2222 2347899
Q ss_pred EEEcCCCC--------Cccc-----------------c----hhhccc-cccEEEEEE-ECC----CcccHHHHHHHHHH
Q 030192 65 VWDVGGQD--------KIRP-----------------L----WRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHR 109 (181)
Q Consensus 65 i~D~~g~~--------~~~~-----------------~----~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~ 109 (181)
++|++|.. +..+ . ....++ +++..++|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999821 1111 0 122233 799999988 764 23456666666666
Q ss_pred HHcCCCCCCCeEEEEEeCCCC
Q 030192 110 MLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~Dl 130 (181)
.++. .++|+++++||.|-
T Consensus 175 eLk~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh---cCCCEEEEEECcCC
Confidence 6665 68999999999993
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.27 E-value=4.5e-11 Score=87.98 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=67.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccccc-----------CccceeEEE--EEEC--CEEEEEEEcCCCCC--------
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVET--VEYK--NISFTVWDVGGQDK-------- 73 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~--~~~~--~~~~~i~D~~g~~~-------- 73 (181)
.++|+++|.+|+|||||||.|.+....... ++..+.... +... .+.+.++||||-.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999886543211 122222222 2222 45788999999211
Q ss_pred ----------cccc---------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 74 ----------IRPL---------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 74 ----------~~~~---------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
|... ....=...|+++|.++.+. .++....-.....+. ...++|-|+.|+|...+.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 0000 0111135899999999874 333344444444444 358899999999976544
Q ss_pred CHhH
Q 030192 135 NAAE 138 (181)
Q Consensus 135 ~~~~ 138 (181)
+...
T Consensus 159 el~~ 162 (281)
T PF00735_consen 159 ELQA 162 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.5e-10 Score=94.16 Aligned_cols=126 Identities=20% Similarity=0.195 Sum_probs=90.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC--cc------------ccc-------CccceeEEEEEECC-EEEEEEEcCCC
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV------------TTI-------PTIGFNVETVEYKN-ISFTVWDVGGQ 71 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~------------~~~-------~~~~~~~~~~~~~~-~~~~i~D~~g~ 71 (181)
.++..+|+++|+-.+||||+..+++... .. +.. -|+.....++.+.+ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4677899999999999999999996421 11 000 12223334566774 99999999999
Q ss_pred CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhC
Q 030192 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLG 144 (181)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~ 144 (181)
-+|.......++-+|+.++|+|+...-.. .....|.+..+ .++|.++++||+|..... ..+++...+.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 99999999999999999999999653222 23344555544 489999999999976532 3344444443
No 310
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=6.5e-11 Score=94.58 Aligned_cols=159 Identities=23% Similarity=0.207 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc-----ccCccceeEEEEE----------------ECCEEEEEEEcCCCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE----------------YKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~ 73 (181)
-+..-|+|+|+..+|||-|+..+.+...-. ....+|-+++... ..---+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 366789999999999999999997643211 1112222222211 1223578999999999
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------------------CC
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------MN 135 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------------~~ 135 (181)
|.++.......||..|+|+|+...-.. .....+..+ +. .+.|+|+.+||+|-... ..
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlep-qtiESi~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEP-QTIESINLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCc-chhHHHHHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 999999999999999999999642111 111222222 22 58999999999995320 01
Q ss_pred HhHHHhhh----------CCC---cccC----cceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 136 AAEITDKL----------GLH---SLRQ----RHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 136 ~~~~~~~~----------~~~---~~~~----~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
..++...+ +++ ++++ .-+.++++||..|+||.+++-+|+++..
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 11121111 111 1222 2356889999999999999999987653
No 311
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.20 E-value=5e-10 Score=82.09 Aligned_cols=151 Identities=20% Similarity=0.189 Sum_probs=82.6
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCccc--------ccC---------ccceeEEEE-----------------
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--------TIP---------TIGFNVETV----------------- 56 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--------~~~---------~~~~~~~~~----------------- 56 (181)
.+......-+.++|++|||||||++++.+.-... ... ..+.....+
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence 4455678899999999999999998886531100 000 011111111
Q ss_pred ---EECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 57 ---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 57 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
...+..+.++++.|..-.... +--..+.-+.++++...+.. . ..+-.+ ...+-++|+||+|+.+.
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~---fdlge~~~v~vlsV~eg~dk--p-lKyp~~------f~~ADIVVLNKiDLl~~ 245 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPAS---FDLGEKHKVAVLSVTEGEDK--P-LKYPHM------FAAASLMLLNKVDLLPY 245 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCc---cchhhceeEEEEECcccccc--c-hhccch------hhcCcEEEEEhHHcCcc
Confidence 112345667777774211111 00112233466666532110 0 011111 23556999999999753
Q ss_pred C--CHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHH
Q 030192 134 M--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~ 176 (181)
. ..+++.+.+... ....+++++|+++|+|++++.+++...
T Consensus 246 ~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 246 LNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 2 233333322111 134579999999999999999999764
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.19 E-value=3.1e-10 Score=90.71 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=72.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCcc-------cc---hhhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY 81 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~~ 81 (181)
..++|+++|.+|+||||++|++++...... ..|...........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 446899999999999999999998763321 123332222233467889999999955421 11 2223
Q ss_pred cc--cccEEEEEEECCCccc---HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 82 FQ--NTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 82 ~~--~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
+. .+|++++|..++.... -....+.+..++....+ ..+|||.|+.|...+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCCC
Confidence 33 4899999988753222 12334445444543221 348999999998753
No 313
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-10 Score=87.65 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=90.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc--CCcc---------------c------c--cCccceeEEEEEECCEEEEEEEcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV---------------T------T--IPTIGFNVETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~~---------------~------~--~~~~~~~~~~~~~~~~~~~i~D~~ 69 (181)
.++.+.+|+-+|.+|||||-..|+. +.+. + . .-++...+.++.+.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3556789999999999999999953 1100 0 0 012223345677789999999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~ 146 (181)
||++|..-.-..+..+|..+.|+|+... ++.....+.+.++. .++||+-++||.|-..... ++++.+.+++.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 9999998887788899999999999654 44444445555554 6899999999999755433 44566666543
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=7.2e-11 Score=86.25 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=99.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc----cC--ccceeE----------------EE----EEE------CCEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IP--TIGFNV----------------ET----VEY------KNIS 62 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~--~~~~~~----------------~~----~~~------~~~~ 62 (181)
+-.++|.++|+...|||||..++.+-..... .. |+..-+ .. ... --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5679999999999999999999977432110 00 000000 00 000 0136
Q ss_pred EEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHH--HHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030192 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL--HRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 140 (181)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~--~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 140 (181)
+.++|.||++-.-+...+-..--|+.++|+.++.++.-....+-+ .+++. -+.+|++-||+|+...+...+-.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-----ik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-----IKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-----cceEEEEecccceecHHHHHHHH
Confidence 789999999754443333444589999999999765543333322 23333 25589999999998754222222
Q ss_pred hhhCCCccc---CcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 141 DKLGLHSLR---QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 141 ~~~~~~~~~---~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
+++ ..|.+ ..+.+++++||..+.|++-+++.|.+.+.
T Consensus 163 ~qI-k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 163 EQI-KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHH-HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 211 11222 24668999999999999999999988764
No 315
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=4.8e-10 Score=79.78 Aligned_cols=150 Identities=16% Similarity=0.069 Sum_probs=97.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc--cc-cCccceeEEEEEECCEEEEEEEcCCCCC-------cccchhhccccccE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~ 87 (181)
-+|.++|-|.+||||++..+.+.... ++ ..+.........+..-++++.|.||--+ -.+......+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 48999999999999999999876532 11 2222222233456778899999998321 11234445688999
Q ss_pred EEEEEECCCcccHHHHHHHHHHH---------------------------------------------------------
Q 030192 88 LIFVVDSNDRDRVVEARDELHRM--------------------------------------------------------- 110 (181)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~--------------------------------------------------------- 110 (181)
+++|.|+..|-+...+.+.-.+-
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 99999998776655554421110
Q ss_pred --HcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 111 --LNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 111 --~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+...+. ..+|.+.++||+|... .+++.-.+... ..+.+||.++.|++++++.+.+.+
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsIS---iEELdii~~ip-------havpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSIS---IEELDIIYTIP-------HAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceee---eeccceeeecc-------ceeecccccccchHHHHHHHhhcc
Confidence 000011 1357889999999554 34444334333 466899999999999999887654
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=2.4e-09 Score=76.98 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=43.2
Q ss_pred EEEEEEEcCCCCC-------------cccchhhcccc-ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192 61 ISFTVWDVGGQDK-------------IRPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 61 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
..+.++|+||-.. ...+...|+++ .+.+++|+|+...-.-+...... ..+.. .+.++++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia-~~ld~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA-KEVDP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH-HHHHH---cCCcEEEEEE
Confidence 5789999999642 12345566674 45888899886432222222222 22222 4789999999
Q ss_pred CCCCCCC
Q 030192 127 KQDLPNA 133 (181)
Q Consensus 127 K~Dl~~~ 133 (181)
|.|..++
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998764
No 317
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.13 E-value=7.8e-10 Score=75.64 Aligned_cols=148 Identities=20% Similarity=0.143 Sum_probs=83.4
Q ss_pred ccc-cEEEEEcCCCCChHHHHhhHhcC---Ccc---------c-c-----cCccceeEEEEE------------------
Q 030192 15 KKE-MRILMVGLDAAGKTTILYKLKLG---EIV---------T-T-----IPTIGFNVETVE------------------ 57 (181)
Q Consensus 15 ~~~-~~i~i~G~~~~GKSsli~~l~~~---~~~---------~-~-----~~~~~~~~~~~~------------------ 57 (181)
++. +.|.+.|++|||||+|+.+++.. ++. + . ....+.....++
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 344 79999999999999999997542 110 0 0 000111111110
Q ss_pred ----ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 58 ----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 58 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
..+..+.+++..|+- ....++.-..+.-|+|+|++..+....- - .+... ..=++|+||.|+++.
T Consensus 90 l~~~~~~~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~K---~-----gP~i~-~aDllVInK~DLa~~ 157 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPRK---G-----GPGIF-KADLLVINKTDLAPY 157 (202)
T ss_pred HhhcCCcCCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCccc---C-----CCcee-EeeEEEEehHHhHHH
Confidence 112467777777721 1112222234488999999754322100 0 11111 135899999999875
Q ss_pred CCH--hHHHhhhCCCcccCcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 134 MNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
... +...+..... +.+.+++++|.++|+|++++++++....
T Consensus 158 v~~dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 158 VGADLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hCccHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 432 3222211111 2345799999999999999999987654
No 318
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.10 E-value=2e-10 Score=83.99 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=95.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc---ccCccceeEEEEEE-CCEEEEEEEcCCCC---------Ccccchhhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHY 81 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~i~D~~g~~---------~~~~~~~~~ 81 (181)
....-|.++|-+|+|||||+++|....... -.+|...+...... .+..+.+.||.|-- .|++...+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee- 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE- 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-
Confidence 345689999999999999999998544321 24455544444443 45567888999832 23332222
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+|.++-|.|++.|...+.....+ ..+++...+..| ++=|-||+|.......++- . -.+.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~----n---------~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK----N---------LDVG 320 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhccccccccccCcccc----C---------Cccc
Confidence 35799999999999987654444333 333332222222 5667788886543211110 0 0346
Q ss_pred ccccCCCChHHHHHHHHHHhhhc
Q 030192 158 TCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+|+++|.|++++.+.+-.++..-
T Consensus 321 isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred cccccCccHHHHHHHHHHHhhhh
Confidence 89999999999999888776543
No 319
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.7e-09 Score=76.32 Aligned_cols=159 Identities=23% Similarity=0.295 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc----cCccceeEEEEEECCEEEEEEEcCCCCCcccc---hhhccccccEEEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLIF 90 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i~ 90 (181)
.+|+++|...|||||+.....+...+.. ..|..+....+...-+++.+||.||+..+-.. ....++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 5699999999999999888776654321 22333333344556688999999998654322 4556789999999
Q ss_pred EEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCC-CH-------hHHHhhhCCCcccCcceEEEEccc
Q 030192 91 VVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM-NA-------AEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
|+|+ .+.+.+....+...+... -.+++.+=+.+.|.|....+ .. ++..+.+....+....+.+..+|-
T Consensus 108 vIDa--Qddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDA--QDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEec--hHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999 445655555444444332 23567888999999965432 11 111222223333445567777877
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030192 161 TSGEGLYEGLDWLSNNIAS 179 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~~~ 179 (181)
.+ ..+-|+|..+++++..
T Consensus 186 yD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred cc-hHHHHHHHHHHHHHhh
Confidence 77 4588999998887753
No 320
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=4.7e-10 Score=78.45 Aligned_cols=116 Identities=24% Similarity=0.402 Sum_probs=78.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc----ccccCccceeEEEEEE-CCEEEEEEEcCCCCCc-----ccchhhcccccc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEY-KNISFTVWDVGGQDKI-----RPLWRHYFQNTQ 86 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~-----~~~~~~~~~~~d 86 (181)
..||++.|.+||||||+=.-+..+.. ....+|+++.+..+.+ +...+++||.+|++.+ .......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 46899999999999997666554432 1235566676666655 4588999999998743 224456778999
Q ss_pred EEEEEEECCCcccHHHHH---HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 87 GLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
++++|||+...+-..+.. ..+..+++. .+...+...++|.|+....
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccc
Confidence 999999997543222222 222233332 2556688889999998654
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=6.8e-10 Score=88.04 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=78.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccc---------cC-------ccceeE---------EEEEECCEEEEEEEcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IP-------TIGFNV---------ETVEYKNISFTVWDVG 69 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~-------~~~~~~---------~~~~~~~~~~~i~D~~ 69 (181)
....+|+++|+-.+|||+|+..|.....+.- .+ .-++.+ .......+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4667999999999999999999976432211 00 111111 1122345779999999
Q ss_pred CCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
|+-.|.......++.+|++++|+|+...-.+ +..+.+..... .+.|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 9999999999999999999999999644333 22223333333 57999999999995
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.04 E-value=1.2e-09 Score=73.97 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=39.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE-CCEEEEEEEcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g 70 (181)
.+.++|+++|.||+|||||+|++.+.......++.+.+...... .+..+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 35688999999999999999999987765444433333222111 223488999998
No 323
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.02 E-value=7.7e-10 Score=74.82 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=61.9
Q ss_pred ccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceE
Q 030192 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
+++..+..+++|++++|+|+.++..... ..+...+.. .++|+++|+||+|+.+....+++.... ...+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCCc
Confidence 4556777788999999999977543221 122222222 368999999999986432222221111 112346
Q ss_pred EEEccccCCCChHHHHHHHHHHhh
Q 030192 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 155 ~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
++.+|++++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 889999999999999999987653
No 324
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.01 E-value=1.2e-09 Score=74.93 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=39.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g 70 (181)
..++++++|.||+|||||+|++.+.......+..|.+. ..+.. +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 45899999999999999999999877644433333332 22332 24689999998
No 325
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.01 E-value=7.9e-10 Score=80.93 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=50.9
Q ss_pred EEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-----------------EEEEEEEcCCCCCc----c
Q 030192 20 ILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI----R 75 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~----~ 75 (181)
|+++|.||+|||||+|++++.... .. ..|.......+...+ ..+.++|+||-.+. .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987753 22 224344443333322 25999999994321 1
Q ss_pred c---chhhccccccEEEEEEECC
Q 030192 76 P---LWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 ~---~~~~~~~~~d~~i~v~d~~ 95 (181)
. .....++++|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2233457899999999974
No 326
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.00 E-value=1.4e-09 Score=82.25 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=53.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc-cc--cCccceeEEEEEECC-----------------EEEEEEEcCCCCCcc--
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~--~~~~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~~-- 75 (181)
++|+++|.||+|||||+|++.+.... .. ..|.......+...+ ..+.++|+||-....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987732 22 223344333333222 358999999943211
Q ss_pred -----cchhhccccccEEEEEEECC
Q 030192 76 -----PLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 76 -----~~~~~~~~~~d~~i~v~d~~ 95 (181)
......++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12333457899999999984
No 327
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=9.5e-09 Score=76.12 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=96.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC----cccccC------ccceeEEEE---------EECCEEEEEEEcCCCCCcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP------TIGFNVETV---------EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~~~~~------~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~ 75 (181)
...++++++|+..||||+|.+++..-. |..... |.+.-+..+ +.+...+.++|.||+....
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345899999999999999999996432 221111 111112222 2255788999999998777
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCC-C---CHhHHHhhh--CCCcc
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNA-M---NAAEITDKL--GLHSL 148 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~-~---~~~~~~~~~--~~~~~ 148 (181)
+......+-.|..++|+|+.....-+...- .+.+++. +..++|+||+|...+ . ..++..... .+...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 666666677999999999975332222222 2222222 335778888885432 2 122221111 11111
Q ss_pred c-CcceEEEEccccCC----CChHHHHHHHHHHhhh
Q 030192 149 R-QRHWYIQSTCATSG----EGLYEGLDWLSNNIAS 179 (181)
Q Consensus 149 ~-~~~~~~~~~S~~~~----~gv~~~~~~i~~~~~~ 179 (181)
. ....+++++|+..| +++.++.+.+-..+.+
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1 23468999999999 7777777777666543
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.98 E-value=9.9e-10 Score=76.72 Aligned_cols=97 Identities=19% Similarity=0.067 Sum_probs=62.1
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCCccc
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL---GLHSLR 149 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~---~~~~~~ 149 (181)
+...+..+++++|++++|+|+.++... ....+ ... ..++|+++|+||+|+..... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577788889999999999999875421 11111 111 14689999999999875432 22222111 000000
Q ss_pred CcceEEEEccccCCCChHHHHHHHHHHh
Q 030192 150 QRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 150 ~~~~~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
.....++.+||+++.|++++++.+.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0112478999999999999999998765
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.98 E-value=1.1e-08 Score=76.32 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=73.8
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCccc-----------ccCccceeEEEE--EEC--CEEEEEEEcCCCCC-----
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETV--EYK--NISFTVWDVGGQDK----- 73 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------~~~~~~~~~~~~--~~~--~~~~~i~D~~g~~~----- 73 (181)
+...++|+++|+.|+|||||+|+|++..... ..|++.+..... ..+ ..+++++||||--+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 3578999999999999999999998764321 123333433332 222 46889999999211
Q ss_pred -------------cc----------cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 74 -------------IR----------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 74 -------------~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
++ +.....=...|+++|.+..+ ..++..+.-....-+. ..+.+|-|+.|+|.
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~ 174 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS----KRVNLIPVIAKADT 174 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh----cccCeeeeeecccc
Confidence 00 00011112589999999976 3444444444444444 24668999999997
Q ss_pred CCCCCHhH
Q 030192 131 PNAMNAAE 138 (181)
Q Consensus 131 ~~~~~~~~ 138 (181)
.-..+..+
T Consensus 175 lT~~El~~ 182 (373)
T COG5019 175 LTDDELAE 182 (373)
T ss_pred CCHHHHHH
Confidence 65433333
No 330
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6.6e-09 Score=77.55 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=83.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCccc----ccCccceeEEEEEECC------------------------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKN------------------------------ 60 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~------------------------------ 60 (181)
....-|+++|.-..||||||+-|+...++. ..||+..-...+.+..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 356689999999999999999999888763 2333332222221100
Q ss_pred -----------EEEEEEEcCCCCC-----------cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 030192 61 -----------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (181)
Q Consensus 61 -----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (181)
..+.++||||--. |......+...+|.++++||....+--.+....+..+..+ .
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----E 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----c
Confidence 2488999999322 3344566678999999999998765545555555555443 3
Q ss_pred CeEEEEEeCCCCCCCCCHhHHHhhhC
Q 030192 119 AVLLVFANKQDLPNAMNAAEITDKLG 144 (181)
Q Consensus 119 ~piivv~nK~Dl~~~~~~~~~~~~~~ 144 (181)
-.+=+|+||.|.+++ +++.+.++
T Consensus 212 dkiRVVLNKADqVdt---qqLmRVyG 234 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT---QQLMRVYG 234 (532)
T ss_pred ceeEEEeccccccCH---HHHHHHHH
Confidence 457899999998765 55666554
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=98.97 E-value=2e-09 Score=81.62 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=62.2
Q ss_pred hhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+.+....+.+...+ +..++.++.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 33568899999999998765 333445544433 22 579999999999997543333333222 234557889
Q ss_pred ccccCCCChHHHHHHHHHH
Q 030192 158 TCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~~ 176 (181)
+||+++.|++++++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999887643
No 332
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.95 E-value=8.6e-10 Score=77.36 Aligned_cols=133 Identities=25% Similarity=0.423 Sum_probs=92.7
Q ss_pred CccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030192 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRVVEARDELHRMLNEDEL 116 (181)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (181)
||+|+....++...+.+.+.|.+|+...++.|.+++.+.-.+++++.++ +....++....+..++..+-.
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 5666666667778888999999999999999999999988888765543 344566666677788887777
Q ss_pred CCCeEEEEEeCCCCCCCC-----------------CHhHHHhhhC------CCcccCcceEEEEccccCCCChHHHHHHH
Q 030192 117 RDAVLLVFANKQDLPNAM-----------------NAAEITDKLG------LHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
Q Consensus 117 ~~~piivv~nK~Dl~~~~-----------------~~~~~~~~~~------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i 173 (181)
.+.++|+.+||.|+.+.. .-.+..+.+- ...-...-+....++|.+.+|+.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 889999999999986421 1111111111 11111122334458899999999999988
Q ss_pred HHHhhh
Q 030192 174 SNNIAS 179 (181)
Q Consensus 174 ~~~~~~ 179 (181)
-+.+..
T Consensus 345 kDtiLq 350 (359)
T KOG0085|consen 345 KDTILQ 350 (359)
T ss_pred HHHHHH
Confidence 777654
No 333
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.3e-08 Score=74.19 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=73.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccc----------cCccceeEEEEEE--C--CEEEEEEEcCCCCC------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY--K--NISFTVWDVGGQDK------ 73 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~--~--~~~~~i~D~~g~~~------ 73 (181)
+.-.++++++|+.|.|||||||+|+...+... ..+..+....... + ..++.++||||-.+
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34569999999999999999999987644321 1133333333322 2 35788999999111
Q ss_pred ------------cc-------cchhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 74 ------------IR-------PLWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 74 ------------~~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
++ +.....+ ...|+++|.+..+ ..++....-....-+. ....+|-|+.|.|...
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLT 172 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCC
Confidence 00 0111111 2589999999976 3334444443444444 3577899999999765
Q ss_pred CCCHhHH
Q 030192 133 AMNAAEI 139 (181)
Q Consensus 133 ~~~~~~~ 139 (181)
..+...+
T Consensus 173 ~~El~~~ 179 (366)
T KOG2655|consen 173 KDELNQF 179 (366)
T ss_pred HHHHHHH
Confidence 5444333
No 334
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.5e-08 Score=80.67 Aligned_cols=147 Identities=14% Similarity=0.278 Sum_probs=84.7
Q ss_pred hhhcccccEEEEEcCCCCChHHHHhhHhcCCcccc--cCccce----------------------------e--------
Q 030192 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGF----------------------------N-------- 52 (181)
Q Consensus 11 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~----------------------------~-------- 52 (181)
+...+...||+|.|.+++||||+||+++.++.-.. .+++.+ +
T Consensus 103 ~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~ 182 (749)
T KOG0448|consen 103 EVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKP 182 (749)
T ss_pred HHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCc
Confidence 34457889999999999999999999976542110 111100 0
Q ss_pred --------EEEEEE--C-----CEEEEEEEcCCCC---CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCC
Q 030192 53 --------VETVEY--K-----NISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114 (181)
Q Consensus 53 --------~~~~~~--~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (181)
...+-+ + .-.+.++|.||-+ ....-...++..+|++|+|.++.+ .+......+......
T Consensus 183 ~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~- 259 (749)
T KOG0448|consen 183 DKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE- 259 (749)
T ss_pred ccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc-
Confidence 000000 0 1147788999843 334445666778999999999943 343333333333332
Q ss_pred CCCCCeEEEEEeCCCCCCCC--CHhHHHhh---hCCCcccCcceEEEEccccC
Q 030192 115 ELRDAVLLVFANKQDLPNAM--NAAEITDK---LGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 115 ~~~~~piivv~nK~Dl~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~S~~~ 162 (181)
.++.|.++.||+|....+ -.+++... +...-.++..-.+|.+|++.
T Consensus 260 --~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 --EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred --cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 356677778999976532 22233332 23223333444577788554
No 335
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.92 E-value=1.4e-09 Score=78.08 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=95.6
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhcCCccc--ccCccceeE-EEEEECCEEEEEEEcCCC----------CCcccchh
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV-ETVEYKNISFTVWDVGGQ----------DKIRPLWR 79 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~-~~~~~~~~~~~i~D~~g~----------~~~~~~~~ 79 (181)
++.+...+.+.|.+|+|||||+|.+...+... ..++.+.+. ...-.-+-.+.+.|.||. .++.++..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 45678999999999999999999998766432 222222211 111122446889999992 23445555
Q ss_pred hcccccc---EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHh-hhC-CCcc
Q 030192 80 HYFQNTQ---GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITD-KLG-LHSL 148 (181)
Q Consensus 80 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~~-~~~-~~~~ 148 (181)
.|+-+-+ .+++++|++.+ ++..+....+++.+ .+.|+.+|.||||...... ...+.. ..+ ....
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 5654433 34455666543 44555555566665 6899999999999754211 111111 000 0111
Q ss_pred cCcceEEEEccccCCCChHHHHHHHHH
Q 030192 149 RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 149 ~~~~~~~~~~S~~~~~gv~~~~~~i~~ 175 (181)
.....+++.+|+.++.|+++++-.+.+
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 122345557999999999988766654
No 336
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.3e-08 Score=73.82 Aligned_cols=140 Identities=21% Similarity=0.172 Sum_probs=90.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC-------C---cc--cccC-------ccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG-------E---IV--TTIP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~-------~---~~--~~~~-------~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
+...+|+.+|+-+.|||||..++... . +. ...| |+......++..+..+-.+|.||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 56789999999999999998887431 1 11 1111 3333344555677888999999999988
Q ss_pred cchhhccccccEEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHh-----HHHhhhCCC
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMNAA-----EITDKLGLH 146 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~~~~~-----~~~~~~~~~ 146 (181)
+.......+.|+.|+|+.+++. ++-+.+ .+.+. -+. .+++++||+|+.+..+.. ++++.+...
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarq------vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 7766666789999999999863 222221 11111 234 577888999999743222 222333333
Q ss_pred cccCcceEEEEccccC
Q 030192 147 SLRQRHWYIQSTCATS 162 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~ 162 (181)
.+..-+.|++.-|+..
T Consensus 162 ~f~gd~~Pii~gSal~ 177 (394)
T COG0050 162 GFPGDDTPIIRGSALK 177 (394)
T ss_pred CCCCCCcceeechhhh
Confidence 3334466787777776
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.89 E-value=5.6e-09 Score=69.46 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=37.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCc--cceeEEEEEECCEEEEEEEcCCC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPT--IGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~ 71 (181)
+++++|.+|+|||||+|++.+......... .+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876433222 222223333333 6899999994
No 338
>PRK00098 GTPase RsgA; Reviewed
Probab=98.87 E-value=7.1e-09 Score=77.28 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=59.9
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEcc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTC 159 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 159 (181)
...++|.+++|+|+.+++........|...+.. .++|+++|+||+|+.+.. ...++... ++..+++++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEEe
Confidence 358899999999998887655554444444433 578999999999996321 11122222 223345789999
Q ss_pred ccCCCChHHHHHHHH
Q 030192 160 ATSGEGLYEGLDWLS 174 (181)
Q Consensus 160 ~~~~~gv~~~~~~i~ 174 (181)
|+++.|+++++..+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998764
No 339
>PRK12288 GTPase RsgA; Reviewed
Probab=98.86 E-value=1.5e-08 Score=76.87 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=63.4
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
..++|.+++|++.....++..+..|+... .. .++|.++|+||+|+.+........... ..++..+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~--~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQL--DIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHH--HHHHhCCCeEEEEeCC
Confidence 35699999999998777887777776533 22 568999999999997543221221111 1123345689999999
Q ss_pred CCCChHHHHHHHHHH
Q 030192 162 SGEGLYEGLDWLSNN 176 (181)
Q Consensus 162 ~~~gv~~~~~~i~~~ 176 (181)
++.|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988653
No 340
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.86 E-value=1.7e-08 Score=72.08 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=63.3
Q ss_pred ccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCC
Q 030192 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDELR 117 (181)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (181)
|.|+-...+..+.++|+.+|.+|+.+.++.|..++....++++|+..++- ..+++....+..+-...-+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 55666667788889999999999999999999999999999999887531 13344444444443333334
Q ss_pred CCeEEEEEeCCCCC
Q 030192 118 DAVLLVFANKQDLP 131 (181)
Q Consensus 118 ~~piivv~nK~Dl~ 131 (181)
.+.+|+.+||.|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 67899999999974
No 341
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.85 E-value=5.7e-08 Score=73.00 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=97.3
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcccc-----------------cCccceeEEEEEE------------------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----------------IPTIGFNVETVEY------------------ 58 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------------~~~~~~~~~~~~~------------------ 58 (181)
....+.++..|+.++|||||.-.|..+....- .-+..+.+.-+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35678999999999999999999976543210 1122222221111
Q ss_pred -----CCEEEEEEEcCCCCCcccch--hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 59 -----KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
.+--+.++||.|+++|.+.. ...-++.|..++++.+++.-+ ..... .+........|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkE---HLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKE---HLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhH---hhhhhhhhcCCEEEEEEecccC
Confidence 12347799999999987653 334468999999999976432 22221 1111122479999999999998
Q ss_pred CCCCH----hHHHhhhC--------------------CCcccCcceEEEEccccCCCChHHHHHHHH
Q 030192 132 NAMNA----AEITDKLG--------------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
Q Consensus 132 ~~~~~----~~~~~~~~--------------------~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~ 174 (181)
+.+.. +++...+. .....+.-.|+|.+|+.+|.|++-+.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 74322 22222221 011122357999999999999876655443
No 342
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.84 E-value=4.9e-09 Score=81.60 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=106.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccc-cCccc-ee-EEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEE
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FN-VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (181)
-.+|++|+|..++|||+|+.+++.+.+... .|.-+ +. ...+.+....+.+.|.+|.... .|....|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEE
Confidence 357999999999999999999998887644 33222 21 2334556778888888884332 2556799999999
Q ss_pred ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--C-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--M-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
.+.+..+++.+...............+|.++++++.-.... . ..+.-...+. .+.....+|++++..|.+++.+
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccceeecchhhhhhHHHH
Confidence 99999999888887777766555556888888887543211 1 1111111110 0112235889999999999999
Q ss_pred HHHHHHHhh
Q 030192 170 LDWLSNNIA 178 (181)
Q Consensus 170 ~~~i~~~~~ 178 (181)
|..+..++.
T Consensus 181 f~~~~~k~i 189 (749)
T KOG0705|consen 181 FQEVAQKIV 189 (749)
T ss_pred HHHHHHHHH
Confidence 999888764
No 343
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.83 E-value=1.1e-08 Score=71.49 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc----------cccCccceeEEEEEECCEEEEEEEcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (181)
...+++++|.+|+|||||+|++.+.... +..|.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 12222222223333332 579999998
No 344
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.83 E-value=2e-08 Score=74.53 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=62.4
Q ss_pred hhccccccEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEE
Q 030192 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
...+.++|.+++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+......... .+...+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~-----~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELV-----EALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHH-----HHHhCCCeEEE
Confidence 33568899999999999887 77777666554433 4789999999999975421111111 11224567889
Q ss_pred ccccCCCChHHHHHHHHH
Q 030192 158 TCATSGEGLYEGLDWLSN 175 (181)
Q Consensus 158 ~S~~~~~gv~~~~~~i~~ 175 (181)
+|++++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887653
No 345
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.78 E-value=2.5e-08 Score=67.41 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=40.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEECCEEEEEEEcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG 70 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g 70 (181)
...+++++|.+|+||||++|++.+.......++.+.+.. .+...+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 567999999999999999999998765555555554432 1112334799999998
No 346
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.76 E-value=2.3e-08 Score=75.21 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=40.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~ 71 (181)
....+++++|-||+||||+||+|.+.......+..|.+- ..+.. +..+.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~-~~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL-DDGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc-CCCeEEecCCCc
Confidence 356889999999999999999999988765444334432 22322 233899999994
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=4.5e-08 Score=66.27 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=57.9
Q ss_pred ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.++.+|.+++|+|+.++..- ....+...+... ..++|+++|+||+|+.+......+...+... .....+.+|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 45789999999999876321 112222233221 2458999999999997543333333333221 1223578999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030192 161 TSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 161 ~~~~gv~~~~~~i~~~~ 177 (181)
+++.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999987653
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.74 E-value=3.3e-08 Score=73.41 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=40.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~ 71 (181)
...++++++|.||+|||||+|++.+.......+..+.+ ...+.. +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence 35689999999999999999999987754443333332 222322 235889999995
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.74 E-value=4.8e-08 Score=66.01 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=53.5
Q ss_pred cEEEEEEECCCcccHHHHHHHHH-HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccCCC
Q 030192 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (181)
|.+++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....++...+.. .....++.+|++++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCCc
Confidence 68999999987654432 2222 23222 47899999999999654322222212211 113357889999999
Q ss_pred ChHHHHHHHHHH
Q 030192 165 GLYEGLDWLSNN 176 (181)
Q Consensus 165 gv~~~~~~i~~~ 176 (181)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988664
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=3.2e-08 Score=67.97 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=39.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccC--ccceeEEEEEECCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP--TIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~ 71 (181)
...++++++|.+|+|||||+|++.+.......+ ........+... ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 345799999999999999999999877643332 222222223332 56889999994
No 351
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.9e-08 Score=79.25 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=78.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCC------------cc---cccCccceeEE--EEE--ECCEEEEEEEcCCCCCc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IV---TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKI 74 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~---~~~~~~~~~~~--~~~--~~~~~~~i~D~~g~~~~ 74 (181)
.+...+++++.+...|||||.+.|.... |. +...+-|++.. .++ ..++.++++|+|||-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3566799999999999999999996432 11 12224444432 233 37899999999999999
Q ss_pred ccchhhccccccEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
........+-+|+.++++|+.. .+++.-+.+.|.+ +...++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 9999999999999999999964 2333333333332 445799999999
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.72 E-value=3e-08 Score=73.22 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=38.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~ 71 (181)
..++++++|.||+|||||+|++.+.......+..+.+ ...+... -.+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 4589999999999999999999987654333322222 2233332 25799999996
No 353
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.71 E-value=1.7e-08 Score=77.19 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCccc
Q 030192 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLR 149 (181)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 149 (181)
+++|.+....+.+.++++++|+|+.+... .....+.+.+ .+.|+++|+||+|+.... ..+++...+. ..++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 55778888888889999999999976432 1122222222 257899999999986532 2222222110 0111
Q ss_pred Ccce---EEEEccccCCCChHHHHHHHHHH
Q 030192 150 QRHW---YIQSTCATSGEGLYEGLDWLSNN 176 (181)
Q Consensus 150 ~~~~---~~~~~S~~~~~gv~~~~~~i~~~ 176 (181)
..++ .++.+||++|.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1222 37889999999999999998653
No 354
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.1e-07 Score=71.44 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEE------------------CCEEEEEEEcCCC----
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY------------------KNISFTVWDVGGQ---- 71 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~------------------~~~~~~i~D~~g~---- 71 (181)
.++++|+|.||+|||||.|.++..... ..+| |++.+...+.. -...+.++|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999876522 2222 33333322211 2356889999882
Q ss_pred ---CCcccchhhccccccEEEEEEECC
Q 030192 72 ---DKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 72 ---~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
+..-+.....++++|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223344556678999999999975
No 355
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.67 E-value=5.8e-07 Score=64.39 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=56.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--Ccccc----cCccceeEEEEEE---CCEEEEEEEcCCCCCccc------chh
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVTT----IPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWR 79 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~----~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~------~~~ 79 (181)
....-|.++|++++|||+|+|++.+. .+... ..|.|+-...... .+..+.++||+|-..... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999998 55421 2345544443333 467899999999543322 222
Q ss_pred hcccc--ccEEEEEEECCCccc
Q 030192 80 HYFQN--TQGLIFVVDSNDRDR 99 (181)
Q Consensus 80 ~~~~~--~d~~i~v~d~~~~~s 99 (181)
..+.. ++.+|+..+.+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHH
Confidence 33333 888888887764433
No 356
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.66 E-value=1.6e-07 Score=71.25 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCc-c-ccc--CccceeEEEEEEC-----------------CEEEEEEEcCCCCC---
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEI-V-TTI--PTIGFNVETVEYK-----------------NISFTVWDVGGQDK--- 73 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~-~-~~~--~~~~~~~~~~~~~-----------------~~~~~i~D~~g~~~--- 73 (181)
++++++|.||+|||||.+.+++... . ..+ .|...+...+... ...+.+.|.||--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999988765 3 222 2333333333332 24688999999432
Q ss_pred ----cccchhhccccccEEEEEEECC
Q 030192 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
........++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2233455678999999999984
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.65 E-value=7.4e-08 Score=65.09 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=37.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc--cccCccceeEEEEEECCEEEEEEEcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (181)
....+++++|.+|+|||||+|.+.+.... +..+........+.. +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-cCCEEEEECCC
Confidence 46788999999999999999999987642 222222222222222 24689999998
No 358
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.5e-07 Score=69.47 Aligned_cols=150 Identities=23% Similarity=0.251 Sum_probs=94.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCccc-----------------ccCcc-------ceeE--EEEEE------------
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTI-------GFNV--ETVEY------------ 58 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~-------~~~~--~~~~~------------ 58 (181)
.++++++|...+|||||+-.|.++.... ...|. |++- .-+++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4699999999999999999997654321 01111 1110 00111
Q ss_pred CCEEEEEEEcCCCCCcccchhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030192 59 KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN- 135 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~- 135 (181)
..--+.++|.+|+.+|.+.....+. ..|..++|+.+......... +-+.-+.. .++|+.++++|+|+.++..
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence 1234779999999999887665555 37888999998765443211 11222222 4799999999999988643
Q ss_pred ---HhHHHhhhCCCcc---------------------cCcceEEEEccccCCCChHHHHH
Q 030192 136 ---AAEITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 136 ---~~~~~~~~~~~~~---------------------~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
.+++++.+..... ...-.|+|.+|+..|+|++-+-.
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 3334333321111 12356899999999999875543
No 359
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.1e-07 Score=73.25 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=85.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
-.+-++++||||+||||||+.+...........+.--+..+.+...++.+.+.|.+ ..++ .....-+|++++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEeccc
Confidence 34677899999999999999997654332222111122335677788999998843 2222 33446799999999996
Q ss_pred CcccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCCCCC-CHhHHHhhhCCCcccC--cceEEEEccccC
Q 030192 96 DRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQ--RHWYIQSTCATS 162 (181)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~S~~~ 162 (181)
-. |+--...+..++.. .+ +.++-|+|..|+.... .+......+...++.. .+..+|..|-..
T Consensus 145 fG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cC--ceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 43 32222234444444 23 3467788999998643 4455555555444432 355566666544
No 360
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=1.8e-07 Score=69.22 Aligned_cols=80 Identities=25% Similarity=0.348 Sum_probs=56.3
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-cccC--ccceeEEEEEE-----------------CCEEEEEEEcCCCC---
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY-----------------KNISFTVWDVGGQD--- 72 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~--~~~~~~~~~~~-----------------~~~~~~i~D~~g~~--- 72 (181)
..++++|||.||+|||||.|.+...... ...| |++.+...+.. -...+.++|++|--
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 6789999999999999999999876643 2233 55544443322 23568999998832
Q ss_pred ----CcccchhhccccccEEEEEEECC
Q 030192 73 ----KIRPLWRHYFQNTQGLIFVVDSN 95 (181)
Q Consensus 73 ----~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
..-+...+.++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 22233455668899999998864
No 361
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.5e-07 Score=69.68 Aligned_cols=143 Identities=20% Similarity=0.177 Sum_probs=88.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc-------CCccc-----cc-----CccceeEEEE--EECCEEEEEEEcCCCCCcc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL-------GEIVT-----TI-----PTIGFNVETV--EYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~-------~~~~~-----~~-----~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~ 75 (181)
+-..+|+-+|+...|||||-.++.. .++.. .. ..+.++...+ +-....+--.|.||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999887743 11111 11 1222333333 3456677788999999998
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCccc
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-----EITDKLGLHSLR 149 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~ 149 (181)
+-...-..+-|+.|+|+.+++..=.+...- .+...+. -..+++.+||.|+++..+.- ++++.+....+.
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVG-----V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVG-----VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcC-----CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 877777788999999999987422222111 2222222 14578889999998543222 233333444444
Q ss_pred CcceEEEEccccC
Q 030192 150 QRHWYIQSTCATS 162 (181)
Q Consensus 150 ~~~~~~~~~S~~~ 162 (181)
.-+.|++.-||.-
T Consensus 207 Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 207 GDNTPVIRGSALC 219 (449)
T ss_pred CCCCCeeecchhh
Confidence 5566777776653
No 362
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=3.8e-07 Score=72.11 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=81.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC-----cccc---cC---------cccee----EEEEEECCEEEEEEEcCCCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IVTT---IP---------TIGFN----VETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~-----~~~~---~~---------~~~~~----~~~~~~~~~~~~i~D~~g~~~ 73 (181)
++..+|.+..+-.+||||+-++.+... +.+. .. .-|++ -..+.+.+++++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 567799999999999999999986532 1110 11 11122 233566789999999999999
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
|.-.....++-.|+.++|++....-. ......|.+..+ -++|-|-.+||+|-
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDR 168 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhh
Confidence 99999999999999999999864321 233445555555 37999999999995
No 363
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.56 E-value=9.3e-08 Score=65.66 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=58.4
Q ss_pred cchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEE
Q 030192 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (181)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
........++|.+++|+|+..+..... ..+...+ .++|.++|+||+|+.+.....+..+.+.. ....+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCeE
Confidence 334556688999999999976543211 1122222 25789999999999644222222222211 12357
Q ss_pred EEccccCCCChHHHHHHHHHHh
Q 030192 156 QSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 156 ~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
+.+|++++.|++++.+.+...+
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHH
Confidence 8899999999999999888764
No 364
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.5e-07 Score=71.08 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=98.9
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCC-----------------------c-----c------cccCccceeEEEEE
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE-----------------------I-----V------TTIPTIGFNVETVE 57 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------------~-----~------~~~~~~~~~~~~~~ 57 (181)
.+++..+++.++|+..+||||+-.+++... + . ....|.+.....++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345788999999999999999988885310 0 0 01224444445566
Q ss_pred ECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
-....+.+.|+||+..|-.....-..++|.-++|+++-.. ..|+.--+-...........-...|+++||+|-+.-.
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 6778999999999999887777677889999999998321 1222221111111111111234578999999976421
Q ss_pred ----CHhHHHhhh----CCCcc-cCcceEEEEccccCCCChHHHH
Q 030192 135 ----NAAEITDKL----GLHSL-RQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 135 ----~~~~~~~~~----~~~~~-~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
-.++....+ ....+ -..+..++++|..+|.++.+..
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 122222211 11111 2356789999999999987654
No 365
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.53 E-value=1.3e-06 Score=65.65 Aligned_cols=137 Identities=21% Similarity=0.266 Sum_probs=75.4
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC------c--cc--cc------------CccceeEEEE-----------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VT--TI------------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~------~--~~--~~------------~~~~~~~~~~----------------- 56 (181)
..-.++++|++|+||||++..+...- . .. .. ...+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999884311 0 00 00 0111111111
Q ss_pred EECCEEEEEEEcCCCCCcccc----hhhc--------cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192 57 EYKNISFTVWDVGGQDKIRPL----WRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||||....... ...+ -...+..++|+|++.. .....+ ....... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 114578999999997543221 1111 1357889999999853 222222 2222221 1234789
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCCcccCcceEEEEccccCCCChHHH
Q 030192 125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
Q Consensus 125 ~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~ 169 (181)
+||.|....- ..-.+....+++ +..++ +|++++++
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~P--------i~~v~--~Gq~~~Dl 301 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGIP--------IKFIG--VGEGIDDL 301 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCCC--------EEEEe--CCCChhhC
Confidence 9999966432 223444444443 44444 77777665
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.52 E-value=2e-07 Score=61.95 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=48.9
Q ss_pred hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEc
Q 030192 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (181)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (181)
...++.+|++++|+|+.++.+.. ...+...+.... .++|+++++||+|+.+.....++.+.+. ..+..++.+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEE
Confidence 34567899999999998765432 112222322211 4689999999999865433323333222 223468889
Q ss_pred cccCCCC
Q 030192 159 CATSGEG 165 (181)
Q Consensus 159 S~~~~~g 165 (181)
|++++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998763
No 367
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=3.8e-07 Score=67.40 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=63.3
Q ss_pred CCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc
Q 030192 69 GGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (181)
Q Consensus 69 ~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (181)
|||. +..+.....++.+|++++|+|+..+.+... ..+...+. ++|+++|+||+|+.+.....++.+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l~-----~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIRG-----NKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHHC-----CCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 4542 233445566788999999999976543211 22233332 5799999999999754323333222211
Q ss_pred ccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
.+..++.+|++++.|++++.+.+.+.+.
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1235788999999999999988877654
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=98.51 E-value=1.1e-06 Score=66.31 Aligned_cols=139 Identities=22% Similarity=0.285 Sum_probs=75.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc----C--Cc--cc-c-c-C-----------ccceeEEEE-----------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL----G--EI--VT-T-I-P-----------TIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~----~--~~--~~-~-~-~-----------~~~~~~~~~----------------- 56 (181)
+...|+++|++|+||||++..+.. . .. .. + . . ..+..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 457899999999999998877743 1 10 00 0 0 0 111111100
Q ss_pred EECCEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 57 EYKNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
...+..+.++||+|....... .... ..+.|..++|+|++...........+...+ .+--+|+||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 113467999999997643321 1111 125889999999975432222222222221 224789999998
Q ss_pred CCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHHH
Q 030192 131 PNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
Q Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~~ 171 (181)
...-. .-.+....+. |+..++ +|++++++..
T Consensus 292 ~~~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence 65332 2233333333 344444 7888877643
No 369
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.51 E-value=4.6e-07 Score=78.81 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=63.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCccc-c----cCcccee-EEEEEE-CCEEEEEEEcCCC----C----Ccccchhhcc-
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFN-VETVEY-KNISFTVWDVGGQ----D----KIRPLWRHYF- 82 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~-~----~~~~~~~-~~~~~~-~~~~~~i~D~~g~----~----~~~~~~~~~~- 82 (181)
=.+++|++|+||||++.+-- -.++- . ..+.+.. ...++. -.-+..++||+|. + .....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~sg-l~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNSG-LKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred CEEEECCCCCchhHHHHhCC-CCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 46899999999999999883 33321 1 0111100 001111 1124579999992 1 1223344443
Q ss_pred --------ccccEEEEEEECCCcc--cH-------HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 83 --------QNTQGLIFVVDSNDRD--RV-------VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 83 --------~~~d~~i~v~d~~~~~--s~-------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
+..|++|+++|+.+.- +- ..+...+.++... .....|+.+++||+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3499999999986421 11 1222233333332 225799999999999875
No 370
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.50 E-value=2e-07 Score=62.80 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
-.++++|++|+|||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 688999999999999999999874
No 371
>PRK12289 GTPase RsgA; Reviewed
Probab=98.49 E-value=3.5e-07 Score=69.50 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
.++|+|++|+|||||||+|.+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999997653
No 372
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.49 E-value=4.4e-07 Score=61.48 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCCCCcccchhh--------ccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
+....++|++|-.+-...... ..-..+.++.++|+............+...+.... ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 356788999996533322211 22358999999998643332212233444444432 789999995
No 373
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.4e-07 Score=71.79 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=90.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC--cc---------------cccCccceeE----EEEEECCEEEEEEEcCCCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE--IV---------------TTIPTIGFNV----ETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~---------------~~~~~~~~~~----~~~~~~~~~~~i~D~~g~~~ 73 (181)
.+-.+|+++.+-.+||||.-.+++... .. ......|++. ..+++.+++++++||||+-+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 456789999999999999999986421 10 0011222332 45677999999999999999
Q ss_pred cccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCC
Q 030192 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 146 (181)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~ 146 (181)
|+-....+++--|+++.|||.+-.-..+.+ ..|.+.-+ .++|-+.++||+|..... .++.+.+.++..
T Consensus 115 f~leverclrvldgavav~dasagve~qtl-tvwrqadk----~~ip~~~finkmdk~~anfe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK----FKIPAHCFINKMDKLAANFENAVDSIEEKLGAK 185 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc----cCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence 999999999999999999999754333332 33444333 589999999999975432 344555555543
No 374
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=6.7e-07 Score=63.38 Aligned_cols=112 Identities=19% Similarity=0.294 Sum_probs=64.2
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCccc----------ccCccceeE--EEEEECC--EEEEEEEcCCCCCc---ccch
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKI---RPLW 78 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~----------~~~~~~~~~--~~~~~~~--~~~~i~D~~g~~~~---~~~~ 78 (181)
-.++|+++|.+|.||||++|++....... ...|.++.. +.+..++ .++.++||||-.++ .+.|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 57899999999999999999997654321 112333322 2233344 46889999992211 1111
Q ss_pred -----------hhcc--------------ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 79 -----------RHYF--------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 79 -----------~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
..|+ ...++++|.+..+. .++..++-.+..-+.+ -..++-|+-|.|-.-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence 1111 14788888888763 2332222222222221 244788889999643
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=98.45 E-value=6.4e-07 Score=68.06 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=35.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccc--c---------CccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
.++|+|.+|+|||||||+|.+...... . .|.......+... ..++||||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 379999999999999999997653321 1 1222222233222 3599999975544
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.45 E-value=5.4e-07 Score=68.98 Aligned_cols=55 Identities=16% Similarity=0.361 Sum_probs=36.5
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc-----c--cccCccceeEEEEEECCEEEEEEEcCCCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI-----V--TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (181)
..++.++|.+|+|||||+|++.+... . +..|.+......+.. +-.+.++||||-.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII 215 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence 46999999999999999999987532 1 223322222333333 1236799999954
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.43 E-value=3.3e-06 Score=62.22 Aligned_cols=138 Identities=20% Similarity=0.207 Sum_probs=75.6
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC------Cc--cc-c-c------------CccceeEEEE-----------------
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG------EI--VT-T-I------------PTIGFNVETV----------------- 56 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~------~~--~~-~-~------------~~~~~~~~~~----------------- 56 (181)
+...++++|++|+||||.+..+... +. .. + . ...+......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999998888421 10 00 0 0 0111111110
Q ss_pred EECCEEEEEEEcCCCCCcccchh-------hc-----cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030192 57 EYKNISFTVWDVGGQDKIRPLWR-------HY-----FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~-------~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv 124 (181)
...++.+.++||||......... .. -..+|..++|+|++.. .... .......+.. .+--+|
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~I 223 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGII 223 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEE
Confidence 01457899999999765332211 11 1248999999999743 2222 2223332211 235789
Q ss_pred EeCCCCCCCCC-HhHHHhhhCCCcccCcceEEEEccccCCCChHHHH
Q 030192 125 ANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
Q Consensus 125 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gv~~~~ 170 (181)
+||.|...... .-.+....+. |+..++ +|++++++-
T Consensus 224 lTKlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLA 260 (272)
T ss_pred EEccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCc
Confidence 99999865432 2244444443 343444 777776653
No 378
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.42 E-value=5.1e-07 Score=65.51 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc--c---------CccceeEEEEEECCEEEEEEEcCCCCC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (181)
..++++|++|+|||||+|++.+...... . .|.......+ . ...++||||-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCccc
Confidence 4789999999999999999987643211 1 1222333333 2 237999999644
No 379
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=1.2e-06 Score=67.15 Aligned_cols=55 Identities=15% Similarity=0.352 Sum_probs=35.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC-----cc--cccCccceeEEEEEECCEEEEEEEcCCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE-----IV--TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (181)
+..++.++|.+|+|||||||++.+.. .. +..|.+......+...+ ...++||||-
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 34689999999999999999998643 11 22332222233333221 2479999995
No 380
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.37 E-value=1.1e-06 Score=65.29 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=63.4
Q ss_pred cCCCC-CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030192 68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 146 (181)
.|||. +..+.....+..+|++++|+|+..+.+... ..+...+. ++|+++|+||+|+.+....+.+.+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 45542 223344556788999999999976543221 22333332 578999999999965422223322221
Q ss_pred cccCcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
..+.+++.+|++++.|++++.+.+...+.
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 11345788999999999999998877654
No 381
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.8e-07 Score=66.79 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=92.1
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhcCCcc---c-----------------------ccCccceeEEE------------
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV---T-----------------------TIPTIGFNVET------------ 55 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~-----------------------~~~~~~~~~~~------------ 55 (181)
.+..++|+-+|+...||||++.++.+-... . .-|..+. +..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~c-y~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGC-YRSFGSSKEDRPPCD 113 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcch-hhccCCCCCCCCCcc
Confidence 467899999999999999999998652210 0 0000000 000
Q ss_pred EEEC------CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHH--HHHcCCCCCCCeEEEEEeC
Q 030192 56 VEYK------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH--RMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 56 ~~~~------~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~~~piivv~nK 127 (181)
..+. -..+.+.|.||++-.-+....-..--|+.++++..+.++.-....+-+. ++.+ =+.++++-||
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNK 188 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNK 188 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEech
Confidence 0000 0246788999986433322222234678888888765433222222111 1111 1347888899
Q ss_pred CCCCCCCCHhHHHhhhCCCccc---CcceEEEEccccCCCChHHHHHHHHHHhh
Q 030192 128 QDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
Q Consensus 128 ~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~~gv~~~~~~i~~~~~ 178 (181)
+|+..+....+..+.+. .|.+ ..+.+++++||.-+.|++-+.+++++++.
T Consensus 189 iDli~e~~A~eq~e~I~-kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQ-KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhhHHHHHHHHHHHH-HHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 99987543222222111 1222 24668999999999999999999998764
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.35 E-value=2.7e-06 Score=66.06 Aligned_cols=109 Identities=21% Similarity=0.173 Sum_probs=63.4
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc------CCc--ccc---cC-----------ccceeEEEEE-----------------
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL------GEI--VTT---IP-----------TIGFNVETVE----------------- 57 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~------~~~--~~~---~~-----------~~~~~~~~~~----------------- 57 (181)
...|+++|++||||||++..+.. .+. .+. .+ ..++.+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999852 111 000 00 1112212111
Q ss_pred ECCEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 58 YKNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
..++.+.++||+|....... ...+ ..+++.+++|+|++..+.-.+....+.+. -.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 02578999999996543321 1111 12578899999987543333333333221 23467899999976
Q ss_pred C
Q 030192 132 N 132 (181)
Q Consensus 132 ~ 132 (181)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 383
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=1.3e-06 Score=63.29 Aligned_cols=117 Identities=16% Similarity=0.258 Sum_probs=76.0
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcccc-----cCccceeEEEEEE--C--CEEEEEEEcCCCC-------Ccc
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY--K--NISFTVWDVGGQD-------KIR 75 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~--~--~~~~~i~D~~g~~-------~~~ 75 (181)
....-.++|+.+|.+|.||||||++|.+-.+... .|++.....+++. . ..++.++||.|-. .|.
T Consensus 37 v~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk 116 (406)
T KOG3859|consen 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYK 116 (406)
T ss_pred HhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccc
Confidence 3345678999999999999999999999877543 3344443333332 2 3578899999821 111
Q ss_pred c-------chhhcc---------------ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 76 P-------LWRHYF---------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 76 ~-------~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
. ....|+ ...++.+|.+..+ ..++..+......-+.. +..||-++-|.|-...
T Consensus 117 ~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Lds----kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 117 PIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLDS----KVNIIPVIAKADTISK 191 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHhh----hhhhHHHHHHhhhhhH
Confidence 1 111111 2467777777776 56777777666666553 5667888889997654
No 384
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.30 E-value=7.8e-07 Score=69.16 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=41.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcccccCcccee--EEEEEECCEEEEEEEcCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g 70 (181)
.+.|++||-||+||||+||.|++.+-.+...|.|-+ ++++.. .-.+-+.|.||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCC
Confidence 589999999999999999999999987776666633 233322 34577899999
No 385
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.30 E-value=1.9e-05 Score=62.40 Aligned_cols=80 Identities=15% Similarity=0.284 Sum_probs=52.8
Q ss_pred EEEEEEcCCC-------------CCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 62 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
+.+++|.||- +..-.+..+|+.+.+++|+|+--.+.+..... .-+++.+-.-.+.-.|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn---VTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI---VTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh---HHHHHHhcCCCCCeeEEEEeec
Confidence 6889999992 22334578889999999999864433332222 2233333333467899999999
Q ss_pred CCCCC--CCHhHHHhhhC
Q 030192 129 DLPNA--MNAAEITDKLG 144 (181)
Q Consensus 129 Dl~~~--~~~~~~~~~~~ 144 (181)
|+++. .....+.+.+.
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 99864 35667777665
No 386
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.28 E-value=7.2e-06 Score=54.94 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=37.1
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
++.+.++||+|..... ..++..+|.+++|....-.+.+.-..-..... .-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~---------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKAGIMEI---------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhhhHhhh---------cCEEEEeCCC
Confidence 5789999998864322 34778899999998876333443332222111 2388999987
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=1.5e-06 Score=66.67 Aligned_cols=97 Identities=20% Similarity=0.174 Sum_probs=56.4
Q ss_pred CcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcccCc
Q 030192 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQR 151 (181)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 151 (181)
++.+.........+.+++|+|+.+... .....+.+.. .+.|+++|+||+|+..... .+++..... ...+..
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKEL 129 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhc
Confidence 455544444333448999999976431 1122222322 2578999999999965321 222221110 011111
Q ss_pred ce---EEEEccccCCCChHHHHHHHHHHh
Q 030192 152 HW---YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
Q Consensus 152 ~~---~~~~~S~~~~~gv~~~~~~i~~~~ 177 (181)
++ .++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 21 477899999999999999987653
No 388
>PRK01889 GTPase RsgA; Reviewed
Probab=98.26 E-value=8.6e-06 Score=62.33 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=55.2
Q ss_pred cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEcccc
Q 030192 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (181)
..++|.+++|+++..+-....+ +.+...+.. .+++.++|+||+|+.+... +........ ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~---~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWE---SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHH---cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence 4789999999999643333333 333333333 4677899999999975411 111121111 335678899999
Q ss_pred CCCChHHHHHHHH
Q 030192 162 SGEGLYEGLDWLS 174 (181)
Q Consensus 162 ~~~gv~~~~~~i~ 174 (181)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988774
No 389
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=4.2e-05 Score=51.23 Aligned_cols=146 Identities=20% Similarity=0.277 Sum_probs=73.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE--CCEEEEEEEcC-CCCC------------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--KNISFTVWDVG-GQDK------------------ 73 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~-g~~~------------------ 73 (181)
+..++|.+.|+||+||||++.++...--.....--|+-...+.. ...-|.+.|+. |...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 45689999999999999999888632111111222222222222 23456666665 2110
Q ss_pred ---cc----cchhhccccccEEEEEEECCCccc--HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC
Q 030192 74 ---IR----PLWRHYFQNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 144 (181)
Q Consensus 74 ---~~----~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 144 (181)
+. .....+++.+|++++ |=-.+=. -..........+. ..+|.|..+.+.+- ++ -.+++.....
T Consensus 83 v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr-~P-~v~~ik~~~~ 154 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSR-HP-LVQRIKKLGG 154 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccC-Ch-HHHHhhhcCC
Confidence 11 112223344666554 4221111 1233334444444 47888888887653 11 1223322211
Q ss_pred CCcccCcceEEEEccccCCCChHHHHHHHHHHhhhc
Q 030192 145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (181)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gv~~~~~~i~~~~~~~ 180 (181)
+.+| .+.+|-+.+++.+...|...
T Consensus 155 --------v~v~----lt~~NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 155 --------VYVF----LTPENRNRILNEILSVLKGE 178 (179)
T ss_pred --------EEEE----EccchhhHHHHHHHHHhccC
Confidence 1232 45566668888888877643
No 390
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.22 E-value=5.1e-06 Score=62.71 Aligned_cols=151 Identities=20% Similarity=0.148 Sum_probs=88.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc-----------------cc--cCccceeEEEEE--------------------
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV-----------------TT--IPTIGFNVETVE-------------------- 57 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~-----------------~~--~~~~~~~~~~~~-------------------- 57 (181)
..+|+++|...+|||||+-.|.+.... +. ..+.+.+.--++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 358999999999999999988764321 00 112221111110
Q ss_pred ---ECCEEEEEEEcCCCCCcccchhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 58 ---YKNISFTVWDVGGQDKIRPLWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 58 ---~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
...--+.++|.+|+++|.+....-+ .-.|.-++++-++-. +...-.+.+...-....|+.+|+||+|+..
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence 1122477899999999886543322 236777777776421 111111222222224799999999999876
Q ss_pred CCCHhHH----HhhhCC---------------------CcccCcceEEEEccccCCCChHHHHHH
Q 030192 133 AMNAAEI----TDKLGL---------------------HSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
Q Consensus 133 ~~~~~~~----~~~~~~---------------------~~~~~~~~~~~~~S~~~~~gv~~~~~~ 172 (181)
...+++- .+.+.. .+-...-+++|.+|-.+|.|++-+...
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 5433332 222211 122234578999999999998765443
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.21 E-value=5.2e-06 Score=61.71 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcccc--cC-------ccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIVTT--IP-------TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
..++++|++|+|||||+|.+.+...... .+ .+......+.... ...++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 5799999999999999999987653321 11 0111112222221 23699999986554
No 392
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.19 E-value=4.4e-06 Score=57.75 Aligned_cols=108 Identities=20% Similarity=0.265 Sum_probs=65.8
Q ss_pred EEEEcCCCCChHHHHhhHhc-C----C-------ccc------ccCccceeEEEEEE---------------------C-
Q 030192 20 ILMVGLDAAGKTTILYKLKL-G----E-------IVT------TIPTIGFNVETVEY---------------------K- 59 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~-~----~-------~~~------~~~~~~~~~~~~~~---------------------~- 59 (181)
+++.|.-|||||||+++++. . + +.+ .....+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 57899999999999999983 1 1 110 00111222222211 2
Q ss_pred -CEEEEEEEcCCCCCcccc------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 60 -NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 60 -~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.....++++.|...-... ... .-..+.++.|+|+.+..........+...+.... ++++||+|+.+
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~ 155 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS 155 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred CCcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence 357788899996544443 111 1248899999999765444555666677777654 89999999876
Q ss_pred CC
Q 030192 133 AM 134 (181)
Q Consensus 133 ~~ 134 (181)
.+
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=98.19 E-value=5.2e-06 Score=62.02 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
...++++|++|+|||||+|.+.+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 45789999999999999999987653
No 394
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.19 E-value=2.6e-06 Score=59.70 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCc--------c--ccc------------CccceeEEEE-----------------EE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEI--------V--TTI------------PTIGFNVETV-----------------EY 58 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~--------~--~~~------------~~~~~~~~~~-----------------~~ 58 (181)
..++++|++|+||||.+-++..... . ... ...++.+... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 3589999999999999988842110 0 000 0122222111 11
Q ss_pred CCEEEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 59 KNISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
++.++.++||+|....... ...+.+ ..+-+++|++++....-......+.+.+. +-=+++||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~-------~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG-------IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS-------TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc-------CceEEEEeecCCC
Confidence 3477999999997654422 112211 57889999999754322222222222221 1257799999865
Q ss_pred C
Q 030192 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 4
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.1e-05 Score=60.19 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=66.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcc----------c--ccC------------ccceeEEEEE-----------EC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV----------T--TIP------------TIGFNVETVE-----------YK 59 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~----------~--~~~------------~~~~~~~~~~-----------~~ 59 (181)
.+.-.++++|++|+||||++..|...... . ... ..+....... ..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 34568999999999999999999542110 0 000 0122222111 14
Q ss_pred CEEEEEEEcCCCCCcccch----hh--ccccccEEEEEEECCC-cccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLW----RH--YFQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~ 131 (181)
+..+.++||+|........ .. ......-.++|++++. .+........+..........- .+-=+|+||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 5689999999976543321 11 1123456688999875 3344445454544432211000 1235778999986
Q ss_pred CC
Q 030192 132 NA 133 (181)
Q Consensus 132 ~~ 133 (181)
..
T Consensus 295 ~~ 296 (374)
T PRK14722 295 SN 296 (374)
T ss_pred CC
Confidence 53
No 396
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.12 E-value=3.6e-05 Score=57.95 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=74.5
Q ss_pred EEEEcCCCCChHHHHhhHhcCCccc--------------c----cC---------ccceeEEEEEE-------------C
Q 030192 20 ILMVGLDAAGKTTILYKLKLGEIVT--------------T----IP---------TIGFNVETVEY-------------K 59 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~~~~~--------------~----~~---------~~~~~~~~~~~-------------~ 59 (181)
.++-|-=||||||++++++.+.... . .. +.|+...++.. +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 4677889999999999997643210 0 00 12222222111 2
Q ss_pred CEEEEEEEcCCCCCcccchhhcc--------ccccEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
.....++++.|-..-......+. -..|+++-|+|+...... ....+.+.+.+.... ++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccC
Confidence 35677888888543322211111 247889999999754332 224445555555433 899999999
Q ss_pred CCCCCHhHHHhhhCCCcccCcceEEEEccc
Q 030192 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (181)
.++...+.++..+... +...+++.+|.
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 9876544444433211 22335666655
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.11 E-value=2.7e-05 Score=53.44 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=39.2
Q ss_pred CEEEEEEEcCCCCCcccch----hhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
+..+.++|++|........ ..+ ....+.+++|+|....... .+......... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568899999975432211 111 1248999999998654322 23333332221 1 25677799997653
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.09 E-value=0.00013 Score=49.93 Aligned_cols=132 Identities=20% Similarity=0.361 Sum_probs=62.3
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEE--CCEEEEEEEc-CCC----------------------CC
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--KNISFTVWDV-GGQ----------------------DK 73 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~-~g~----------------------~~ 73 (181)
+|.+.|++|+||||++.++...-.....+..|+....+.. ...-|.+.|. .|. +.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 6899999999999999998754322222333333322222 1233445554 220 00
Q ss_pred cccc----hhhccccccEEEEEEECCC-cc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc
Q 030192 74 IRPL----WRHYFQNTQGLIFVVDSND-RD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 147 (181)
Q Consensus 74 ~~~~----~~~~~~~~d~~i~v~d~~~-~~-s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (181)
+... ....+..+| ++|+|=-. .+ .-....+.+..++. .++|++.++.+.- .....++++..-..
T Consensus 81 fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~--~~~~l~~i~~~~~~-- 150 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSD--LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRS--DNPFLEEIKRRPDV-- 150 (168)
T ss_dssp HHCCCCCCCHHHHHCCH--EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS----SCCHHHHHTTTTS--
T ss_pred HHHHHHHHHHhhcCCCC--EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCC--CcHHHHHHHhCCCc--
Confidence 1111 111123455 67777321 11 11334444555555 4788999888872 13345666654443
Q ss_pred ccCcceEEEEccccCCCCh
Q 030192 148 LRQRHWYIQSTCATSGEGL 166 (181)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gv 166 (181)
.+++++..+..-+
T Consensus 151 ------~i~~vt~~NRd~l 163 (168)
T PF03266_consen 151 ------KIFEVTEENRDAL 163 (168)
T ss_dssp ------EEEE--TTTCCCH
T ss_pred ------EEEEeChhHHhhH
Confidence 4666665555443
No 399
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=5.5e-06 Score=61.03 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcc------cc-----cCccceeEEEEEECCEEEEEEEcCCCCCcc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIV------TT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (181)
..+++|.+|+|||||+|+|....-. .. ..|.......+... -.++||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 7789999999999999999864321 11 11222222333222 3789999975544
No 400
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.05 E-value=3.8e-06 Score=58.50 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=42.7
Q ss_pred EEEEEEEcCCCCCcccc---hhhc---ccc---ccEEEEEEECCC---c-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030192 61 ISFTVWDVGGQDKIRPL---WRHY---FQN---TQGLIFVVDSND---R-DRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~---~~~~---~~~---~d~~i~v~d~~~---~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK 127 (181)
-.+-++|.||+-+.... .+.. +.+ --++++++|+-- . .-+......+...+. ...|.|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 35789999997543221 1111 111 123455555421 1 112333334444444 36899999999
Q ss_pred CCCCCCCCHhHHHhhh
Q 030192 128 QDLPNAMNAAEITDKL 143 (181)
Q Consensus 128 ~Dl~~~~~~~~~~~~~ 143 (181)
.|+......+++.+-+
T Consensus 174 MDLlk~~~k~~l~~Fl 189 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFL 189 (273)
T ss_pred HHHhhhhhHHHHHHhc
Confidence 9998765555555544
No 401
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.03 E-value=3.4e-06 Score=63.84 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=43.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE--EEEEECCEEEEEEEcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGG 70 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g 70 (181)
++.++++|+|-||+||||+||+|...+.+...++.|++- ..+. -+-.+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence 578999999999999999999999998876666555543 2222 345688999998
No 402
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.02 E-value=8.9e-05 Score=57.10 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=76.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC-----------------Ccccc-----cCccceeE-----EEEE---ECCEEEE
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG-----------------EIVTT-----IPTIGFNV-----ETVE---YKNISFT 64 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~-----------------~~~~~-----~~~~~~~~-----~~~~---~~~~~~~ 64 (181)
...+=+++|||..+||||||.||+.- ..+.. ..|++..+ ..+. .-.++++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 46688999999999999999999641 11111 11222221 1222 2356888
Q ss_pred EEEcCC--------CCC--cccc----hhh---------------cc--ccccEEEEEEECC----CcccHHHHHHHHHH
Q 030192 65 VWDVGG--------QDK--IRPL----WRH---------------YF--QNTQGLIFVVDSN----DRDRVVEARDELHR 109 (181)
Q Consensus 65 i~D~~g--------~~~--~~~~----~~~---------------~~--~~~d~~i~v~d~~----~~~s~~~~~~~~~~ 109 (181)
++|..| +.+ ..++ |.. .. ...=++++.-|.+ .++.|..+.+....
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 888766 110 0000 000 00 1244555555543 24567666666666
Q ss_pred HHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 110 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 110 ~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.++. -++|.++++|-.+-..+ +..+++..+.. +++++++.+++..
T Consensus 175 ELk~---igKPFvillNs~~P~s~-et~~L~~eL~e----kY~vpVlpvnc~~ 219 (492)
T PF09547_consen 175 ELKE---IGKPFVILLNSTKPYSE-ETQELAEELEE----KYDVPVLPVNCEQ 219 (492)
T ss_pred HHHH---hCCCEEEEEeCCCCCCH-HHHHHHHHHHH----HhCCcEEEeehHH
Confidence 6665 58999999998873322 22233333322 2445566666554
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.98 E-value=0.0001 Score=56.56 Aligned_cols=111 Identities=16% Similarity=0.245 Sum_probs=63.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCc-ccccC-----------------------ccceeEEEE-----------EECC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP-----------------------TIGFNVETV-----------EYKN 60 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~-----------------------~~~~~~~~~-----------~~~~ 60 (181)
+.-.|+++||+|+||||-+-.|..... ....+ -+++....+ ....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 477899999999999998888743221 00011 111111111 1145
Q ss_pred EEEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 61 ISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
+.+.++||.|...+... ...++. ...-+.+|++++.. ...+...+..+..- ..-=+++||.|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccCc
Confidence 68999999998765543 333333 24455567887643 34444444443221 122578899997653
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.98 E-value=0.00018 Score=49.47 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998643
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=2.1e-05 Score=60.43 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=67.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC--------cccc--c------------CccceeEEEEE--------------EC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVTT--I------------PTIGFNVETVE--------------YK 59 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~--------~~~~--~------------~~~~~~~~~~~--------------~~ 59 (181)
+...|+++|++|+||||++..|...- +... . ...++.+.... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 44689999999999999999995311 0000 0 01112211110 01
Q ss_pred CEEEEEEEcCCCCCcccc----hhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
+..+.++||+|....... ....+ ...+.+++|+|++.. ..........+.. -.+-=+|+||.|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 468999999997543221 22222 246778899987532 2233333323211 1224688999998764
Q ss_pred C-CHhHHHhhhCCC
Q 030192 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
- ..-.+....+++
T Consensus 393 ~G~iLni~~~~~lP 406 (436)
T PRK11889 393 SGELLKIPAVSSAP 406 (436)
T ss_pred ccHHHHHHHHHCcC
Confidence 3 233455555554
No 406
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.95 E-value=3.7e-06 Score=63.74 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=53.4
Q ss_pred hhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeE-EEEEECCEEEEEEEcCCCCCc--ccchhhccccccEE
Q 030192 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDKI--RPLWRHYFQNTQGL 88 (181)
Q Consensus 12 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~--~~~~~~~~~~~d~~ 88 (181)
.+.++.+-|+++|-||+||||+||+|...+.+...|..|.+- ..+-.--.++-++|.||--.- ....... ..++
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv---LkGv 378 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV---LKGV 378 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH---hhce
Confidence 346789999999999999999999999998887666544321 111111235678899984221 1222222 2345
Q ss_pred EEEEECCCccc
Q 030192 89 IFVVDSNDRDR 99 (181)
Q Consensus 89 i~v~d~~~~~s 99 (181)
+=|=++.+++.
T Consensus 379 VRVenv~~pe~ 389 (572)
T KOG2423|consen 379 VRVENVKNPED 389 (572)
T ss_pred eeeeecCCHHH
Confidence 55556655543
No 407
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.95 E-value=3.6e-05 Score=56.78 Aligned_cols=88 Identities=24% Similarity=0.203 Sum_probs=61.6
Q ss_pred ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcccCcceEEEEccccC
Q 030192 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (181)
.+.|-.++|+.+.+|+--......+.-.... .++..++++||+|+.+.+.... ......++..+++++.+|+++
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~~ 151 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAKN 151 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCcC
Confidence 3477778888887776555555555555444 5677788899999987654443 112234455677899999999
Q ss_pred CCChHHHHHHHHHH
Q 030192 163 GEGLYEGLDWLSNN 176 (181)
Q Consensus 163 ~~gv~~~~~~i~~~ 176 (181)
+.|++++...+...
T Consensus 152 ~~~~~~l~~~l~~~ 165 (301)
T COG1162 152 GDGLEELAELLAGK 165 (301)
T ss_pred cccHHHHHHHhcCC
Confidence 99999998877543
No 408
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.93 E-value=9.7e-05 Score=45.20 Aligned_cols=97 Identities=20% Similarity=0.120 Sum_probs=55.7
Q ss_pred EEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCcccc-hhhccccccEEEEEEECCCcc
Q 030192 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~ 98 (181)
+.+.|..|+|||++...+...-.. .+.....+. .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 678899999999999888643221 111221122 7899999987544431 13455679999999988632
Q ss_pred cHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030192 99 RVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~piivv~n 126 (181)
+....................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322222222223455555544
No 409
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.92 E-value=3.6e-05 Score=57.96 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=38.7
Q ss_pred EEEEEEEcCCCCCcccchhhccc--------cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
....++++.|...-..+...++. ..++++.|+|+.+-.............+.... ++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence 56678899997654443332211 36889999999643221111112223333322 89999999875
Q ss_pred C
Q 030192 133 A 133 (181)
Q Consensus 133 ~ 133 (181)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 3
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=9.7e-05 Score=58.84 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=61.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC--------Cc--ccccC--------------ccceeEEEEE-----------EC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG--------EI--VTTIP--------------TIGFNVETVE-----------YK 59 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~--~~~~~--------------~~~~~~~~~~-----------~~ 59 (181)
+..-.++|+|++|+||||++..|... +. ....+ ..++.+.... ..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568999999999999999888531 11 01000 1112121111 13
Q ss_pred CEEEEEEEcCCCCCcccchhh---ccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRH---YFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
++.+.++||+|.......... .+. .....++|++.+. +.......+..+.. ..+.-+|+||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 578999999996543322110 011 1234667778753 33344433333322 2356799999998553
No 411
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.86 E-value=0.00012 Score=57.40 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=60.7
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC------Cc-----ccccC-----------ccceeEEEEE---------------E
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETVE---------------Y 58 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~---------------~ 58 (181)
....|+++|++|+||||++..+... +. ....+ ..+..+.... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4668999999999999998888421 10 00001 0111111100 0
Q ss_pred CCEEEEEEEcCCCCCcccch----h--hccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 59 KNISFTVWDVGGQDKIRPLW----R--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
....+.++||+|........ . .....+|.+++|+|++... +.......+... -...-+|+||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCCC
Confidence 23478999999976543221 1 1123689999999987542 222222222111 112357789999754
No 412
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.82 E-value=2.9e-05 Score=42.60 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=27.9
Q ss_pred cccEEEEEEECCCccc--HHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192 84 NTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 84 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
-.++++|++|++..+. .+.....+.++.... .++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 3789999999997655 455556666665542 3899999999998
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=8.6e-05 Score=56.86 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=66.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC--------ccc--ccC------------ccceeEEEEE--------------EC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE--------IVT--TIP------------TIGFNVETVE--------------YK 59 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~--------~~~--~~~------------~~~~~~~~~~--------------~~ 59 (181)
..-.++++|++|+||||++..+...- +.+ ... ..++.+.... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45678999999999999999885311 000 000 1111111110 02
Q ss_pred CEEEEEEEcCCCCCcccc----hhhccc--cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPL----WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
++.+.++||+|....... ...+.. ..+.+++|.+++ .........+..+ . .-.+--+|+||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f-~----~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL-A----EIPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc-C----cCCCCEEEEEcccCCCC
Confidence 478999999997553322 122222 356667777663 2233333333221 1 11234688999998654
Q ss_pred C-CHhHHHhhhCCC
Q 030192 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
- ..-.+....+++
T Consensus 358 ~G~~Lsv~~~tglP 371 (407)
T PRK12726 358 IGDLYTVMQETNLP 371 (407)
T ss_pred ccHHHHHHHHHCCC
Confidence 3 223444445544
No 414
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=8.8e-05 Score=64.04 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=63.4
Q ss_pred EEEEcCCCCChHHHHhhHhcCCccc-c---cCccceeEEEEEE-CCEEEEEEEcCCC--------CCcccchhhc-----
Q 030192 20 ILMVGLDAAGKTTILYKLKLGEIVT-T---IPTIGFNVETVEY-KNISFTVWDVGGQ--------DKIRPLWRHY----- 81 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~i~D~~g~--------~~~~~~~~~~----- 81 (181)
-+++|++|+||||++..-....... . ....+......+. -.-+-.++||.|. +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk 207 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK 207 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence 5899999999999987664433221 1 0111110111111 2335689999982 1223345443
Q ss_pred ----cccccEEEEEEECCCcc---cH------HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 82 ----FQNTQGLIFVVDSNDRD---RV------VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 82 ----~~~~d~~i~v~d~~~~~---s~------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.+..|++|+.+|+.+.- .- ..+...+.++..... -..|+++++||.|+..
T Consensus 208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccc
Confidence 23599999999985421 11 112223333333322 4689999999999876
No 415
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.81 E-value=9.2e-05 Score=56.37 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=44.5
Q ss_pred EEEEEEEcCCCCCcccchhhcc-------ccccEEEEEEECCCccc--H--------------------HHHHHHHHHHH
Q 030192 61 ISFTVWDVGGQDKIRPLWRHYF-------QNTQGLIFVVDSNDRDR--V--------------------VEARDELHRML 111 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~~~~~~~ 111 (181)
....++++.|...-..+...+. -..|+++.|+|+.+-.. + ......+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4677889999665443333221 14788999999864211 0 01122333444
Q ss_pred cCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 112 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 143 (181)
.... ++++||+|+.+....+++...+
T Consensus 173 ~~AD------~IvlnK~Dl~~~~~l~~~~~~l 198 (341)
T TIGR02475 173 ACAD------LVILNKADLLDAAGLARVRAEI 198 (341)
T ss_pred HhCC------EEEEeccccCCHHHHHHHHHHH
Confidence 4332 8999999998765555544433
No 416
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.81 E-value=0.00013 Score=53.93 Aligned_cols=112 Identities=11% Similarity=0.107 Sum_probs=64.6
Q ss_pred HHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCC-----------
Q 030192 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK----------- 73 (181)
Q Consensus 5 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------- 73 (181)
+..++......+-.+++++|++|.|||+++++|.........+. .....+..+.+|....
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence 34455555556778999999999999999999987654322211 1123556666654211
Q ss_pred -------------cccchhhccccccEEEEEEECC-C--cccHHHH---HHHHHHHHcCCCCCCCeEEEEEeCC
Q 030192 74 -------------IRPLWRHYFQNTQGLIFVVDSN-D--RDRVVEA---RDELHRMLNEDELRDAVLLVFANKQ 128 (181)
Q Consensus 74 -------------~~~~~~~~~~~~d~~i~v~d~~-~--~~s~~~~---~~~~~~~~~~~~~~~~piivv~nK~ 128 (181)
........++....=++++|=- + .-+.... .+.+..+.+ ..++|+|.+|++-
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N---eL~ipiV~vGt~~ 190 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN---ELQIPIVGVGTRE 190 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh---ccCCCeEEeccHH
Confidence 1122335566778888888831 1 0112222 222222222 2568999998763
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00023 Score=55.75 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCC------c-c---cccC--------------ccceeEEEE-----------EECCE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGE------I-V---TTIP--------------TIGFNVETV-----------EYKNI 61 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~------~-~---~~~~--------------~~~~~~~~~-----------~~~~~ 61 (181)
.-.++|+|++|+||||++..|.... . . +..+ ..++.+... ...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 3478999999999999877773211 0 0 0111 011111110 11357
Q ss_pred EEEEEEcCCCCCcc----cchhhccc---cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 62 SFTVWDVGGQDKIR----PLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 62 ~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
.+.++||+|..... .....++. ...-..+|++++.. ...+.+.+..+-. .+ +--+++||.|....
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~----~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR----LP-LDGLIFTKLDETSS 372 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC----CC-CCEEEEeccccccc
Confidence 89999999975543 12222323 34567788888532 2333343333321 11 23688999998654
No 418
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=4.7e-05 Score=59.21 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=61.1
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCc-----cc-------cc------------CccceeEEEE-----------EECC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEI-----VT-------TI------------PTIGFNVETV-----------EYKN 60 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~-----~~-------~~------------~~~~~~~~~~-----------~~~~ 60 (181)
..-.++++|++|+||||++..+.+... .. .. ...++..... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 455899999999999999997754210 00 00 0111111110 1145
Q ss_pred EEEEEEEcCCCCCccc----chhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 61 ISFTVWDVGGQDKIRP----LWRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 61 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
....++||+|...... ....+. ...+-.++|+|++.. ...+.+.+..+.. -.+-=+|+||.|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence 6789999999654322 122221 234567889998732 2333333333211 1223578899998653
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=97.72 E-value=0.00027 Score=55.34 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=42.9
Q ss_pred CEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
++.+.++||+|....... ...+ .-..+.+++|+|++.. ++..+....+.... ...-+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 467999999996543221 1111 1257888999998643 33333333332211 123577799996432
Q ss_pred C-CHhHHHhhhCCC
Q 030192 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
. ....+....+.+
T Consensus 256 gG~alsi~~~~~~P 269 (433)
T PRK10867 256 GGAALSIRAVTGKP 269 (433)
T ss_pred ccHHHHHHHHHCcC
Confidence 2 233444444443
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.70 E-value=0.00012 Score=57.26 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=43.9
Q ss_pred CCEEEEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030192 59 KNISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 132 (181)
.++.+.++||+|....... ...+ .-+.+.+++|+|++.. +........+.... ...=+|+||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 3467999999996543221 1111 2258899999998744 23333333332211 12357789999643
Q ss_pred CC-CHhHHHhhhCCC
Q 030192 133 AM-NAAEITDKLGLH 146 (181)
Q Consensus 133 ~~-~~~~~~~~~~~~ 146 (181)
.. ....+....+.+
T Consensus 254 ~~G~~lsi~~~~~~P 268 (428)
T TIGR00959 254 RGGAALSVRSVTGKP 268 (428)
T ss_pred cccHHHHHHHHHCcC
Confidence 22 233444545443
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.69 E-value=0.0001 Score=54.21 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=68.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC----c----ccc--------------cCccceeEEEEE--------------EC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE----I----VTT--------------IPTIGFNVETVE--------------YK 59 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~----~----~~~--------------~~~~~~~~~~~~--------------~~ 59 (181)
+.-+++++|++|+||||++..+...- . ... ....++...... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 34699999999999999988874321 0 000 001222221110 12
Q ss_pred CEEEEEEEcCCCCCcccc----hhhcc--ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 133 (181)
+..+.++||+|....... +..++ .+.+-.++|+|++.. .+........+.. -.+-=+++||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 578999999997643221 22222 246678999998632 2333333333311 1234688999998764
Q ss_pred C-CHhHHHhhhCCC
Q 030192 134 M-NAAEITDKLGLH 146 (181)
Q Consensus 134 ~-~~~~~~~~~~~~ 146 (181)
. ..-.+....+.+
T Consensus 227 ~G~~l~~~~~~~~P 240 (270)
T PRK06731 227 SGELLKIPAVSSAP 240 (270)
T ss_pred ccHHHHHHHHHCcC
Confidence 3 222444444443
No 422
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00015 Score=56.20 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCc---------cccc--------------CccceeEEEE----------EECCEEE
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEI---------VTTI--------------PTIGFNVETV----------EYKNISF 63 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~---------~~~~--------------~~~~~~~~~~----------~~~~~~~ 63 (181)
..-++++|++||||||++.+|..... .+.. ...+...... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 34688999999999999999863210 0000 0111111111 1136688
Q ss_pred EEEEcCCCCCccc----chhhccc-----cccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030192 64 TVWDVGGQDKIRP----LWRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
Q Consensus 64 ~i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 134 (181)
.++||+|...... .+..+++ ...-.++|+|++.. .....+..... .. -.+-=+|+||.|....-
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence 9999999653221 1222222 24468899998653 22333322222 21 12346889999986533
Q ss_pred -CHhHHHhhhCCC
Q 030192 135 -NAAEITDKLGLH 146 (181)
Q Consensus 135 -~~~~~~~~~~~~ 146 (181)
..-.+....+++
T Consensus 376 G~il~i~~~~~lP 388 (432)
T PRK12724 376 GSFLELADTYSKS 388 (432)
T ss_pred cHHHHHHHHHCCC
Confidence 222444444444
No 423
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.67 E-value=7e-05 Score=55.24 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=37.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc-----ccccCccceeEEE---EEE-CCEEEEEEEcCCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVET---VEY-KNISFTVWDVGGQ 71 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----~~~~~~~~~~~~~---~~~-~~~~~~i~D~~g~ 71 (181)
.-..++.++|-||+|||||||++..... ....+..|.+... +.. ..-.+.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 4678999999999999999999865332 1223333333211 222 3345889999993
No 424
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.66 E-value=4.7e-05 Score=42.80 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHhhHh
Q 030192 19 RILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~ 38 (181)
..+|.|+.||||||+++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 425
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.00097 Score=43.69 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=28.8
Q ss_pred hHHHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
.+..+...+.......+++.|++|+|||++++.+.+.-
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34445455554456789999999999999999998654
No 426
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.65 E-value=0.0002 Score=56.72 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.--++++|++|+||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35689999999999999999864
No 427
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.64 E-value=4.7e-05 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 428
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=6.8e-05 Score=56.90 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=58.2
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC----c-----c-ccc------------CccceeE-E----------------E
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE----I-----V-TTI------------PTIGFNV-E----------------T 55 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~-----~-~~~------------~~~~~~~-~----------------~ 55 (181)
.+.--|.++|..|+||||.|-.+.... + + ++. ...++.+ . .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 456678999999999999998884311 0 0 000 0011111 0 1
Q ss_pred EEECCEEEEEEEcCCCCCcccc-------hhhccccccEEEEEEECCCcccHHHHHHHHHHHHc
Q 030192 56 VEYKNISFTVWDVGGQDKIRPL-------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 112 (181)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 112 (181)
+..+++++.|.||.|...-... ...+ -+.|-+|+|.|++-.+.-.....-+.+.+.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~a-i~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKA-IKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhh-cCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 2225788999999995432221 1111 259999999999876665555555555543
No 429
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00023 Score=59.15 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=65.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhcCCcc----------c--ccC------------ccceeEEEE-----------EECCEE
Q 030192 18 MRILMVGLDAAGKTTILYKLKLGEIV----------T--TIP------------TIGFNVETV-----------EYKNIS 62 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~~~~----------~--~~~------------~~~~~~~~~-----------~~~~~~ 62 (181)
--++++|++|+||||.+..+...... . ... ..++.+... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46899999999999999988642210 0 000 011111111 113567
Q ss_pred EEEEEcCCCCCcccc----hhhc--cccccEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-
Q 030192 63 FTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM- 134 (181)
Q Consensus 63 ~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~- 134 (181)
+.++||+|....... .... ....+-.++|+|++.. +.+.++...+...... .+-=+|+||.|....-
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~~G 340 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATHLG 340 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCCcc
Confidence 999999995432211 1111 2346678899998742 2333333333322110 1235789999986533
Q ss_pred CHhHHHhhhCCC
Q 030192 135 NAAEITDKLGLH 146 (181)
Q Consensus 135 ~~~~~~~~~~~~ 146 (181)
..-.+....+++
T Consensus 341 ~iL~i~~~~~lP 352 (767)
T PRK14723 341 PALDTVIRHRLP 352 (767)
T ss_pred HHHHHHHHHCCC
Confidence 222444444443
No 430
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00032 Score=55.16 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=73.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC------------cccc---cCccceeEEE--E------------------EEC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE------------IVTT---IPTIGFNVET--V------------------EYK 59 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~~---~~~~~~~~~~--~------------------~~~ 59 (181)
.+..++.++.+...|||||-..|.... |... ....+++..+ + +..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 455688999999999999999996532 1111 1111222211 1 113
Q ss_pred CEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
+.-++++|.||+-+|.......++-.|+.++|+|.-+.--. .....+.+.+.+ .+.-++++||.|-+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhHH
Confidence 56789999999999999999999999999999998542111 112223333333 33347889999953
No 431
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00078 Score=52.12 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=68.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC---------C-c--cc--cc------------CccceeEEEEE-----------E
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG---------E-I--VT--TI------------PTIGFNVETVE-----------Y 58 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~---------~-~--~~--~~------------~~~~~~~~~~~-----------~ 58 (181)
....|+++|++|+||||.+..+... . . .+ .. ...++.+.... .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3468999999999999999888431 1 0 00 00 01122111111 1
Q ss_pred CCEEEEEEEcCCCCCccc----chhhcccc---ccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030192 59 KNISFTVWDVGGQDKIRP----LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 131 (181)
.++.+.++||+|...... ....++.. ..-.++|+|++.. ...+.+.+..... -.+-=+++||.|..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 467899999999754331 12222232 2368899999754 3344444443321 12346889999986
Q ss_pred CCC-CHhHHHhhhCCC
Q 030192 132 NAM-NAAEITDKLGLH 146 (181)
Q Consensus 132 ~~~-~~~~~~~~~~~~ 146 (181)
..- ..-.+....+++
T Consensus 326 ~~~G~~l~~~~~~~~P 341 (388)
T PRK12723 326 TCVGNLISLIYEMRKE 341 (388)
T ss_pred CcchHHHHHHHHHCCC
Confidence 543 222444444443
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.55 E-value=6.6e-05 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHhhHhc
Q 030192 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~ 39 (181)
|+++|+|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
No 433
>PRK07261 topology modulation protein; Provisional
Probab=97.54 E-value=7.3e-05 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+|+|+|++|||||||...+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 434
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.53 E-value=0.00044 Score=43.20 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=48.0
Q ss_pred EEEEc-CCCCChHHHHhhHhcCCcccccCccceeEEEEEE-CCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCc
Q 030192 20 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
Q Consensus 20 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
|.+.| ..|+||||+...+...-... +.....++. ..+.+.++|+|+..... ....+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence 56677 47999999987774322111 111111111 11678999999875433 235667899999999886 3
Q ss_pred ccHHHHHHHH
Q 030192 98 DRVVEARDEL 107 (181)
Q Consensus 98 ~s~~~~~~~~ 107 (181)
.++....+.+
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 435
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.00033 Score=54.13 Aligned_cols=110 Identities=25% Similarity=0.221 Sum_probs=64.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC------Cc-----ccccC-----------ccceeEEEEE---------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETVE--------------- 57 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~--------------- 57 (181)
+....|+++|-.||||||.+-.|... +. ..+.| ..+..++...
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 45678999999999999998877431 10 01111 1122222111
Q ss_pred --ECCEEEEEEEcCCCCCcccch------hhccccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030192 58 --YKNISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
Q Consensus 58 --~~~~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piivv~nK~D 129 (181)
...+.+.|+||+|....+... ..-.-+.|-+++|+|+.-.+...+....+.+.+.- -=+|+||.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEccc
Confidence 134689999999965443321 11123699999999998665544554545444332 246677777
Q ss_pred CC
Q 030192 130 LP 131 (181)
Q Consensus 130 l~ 131 (181)
..
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 54
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=8.8e-05 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 437
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.50 E-value=8.9e-05 Score=51.20 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
++|+|+|+|||||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
No 438
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.45 E-value=0.00019 Score=51.07 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=37.3
Q ss_pred CEEEEEEEcCCCCCcccc------hhhccccccEEEE---EEEC---CCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEe
Q 030192 60 NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIF---VVDS---NDRDRVVEAR-DELHRMLNEDELRDAVLLVFAN 126 (181)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~---v~d~---~~~~s~~~~~-~~~~~~~~~~~~~~~piivv~n 126 (181)
.-...++|.|||-+.-.. ....+++-+.=+. ++|+ ++|..+-... -.+..++. ...|-|=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhh
Confidence 346789999997543221 1222334444444 4444 3454443222 22223333 4677888999
Q ss_pred CCCCCC
Q 030192 127 KQDLPN 132 (181)
Q Consensus 127 K~Dl~~ 132 (181)
|+|+..
T Consensus 172 K~Dl~~ 177 (290)
T KOG1533|consen 172 KADLLK 177 (290)
T ss_pred HhHHHH
Confidence 999864
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00017 Score=50.78 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.4
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
.+.-.++++||+|||||||++.+-+-+.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 4556789999999999999999976543
No 440
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.43 E-value=0.00094 Score=42.03 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=53.2
Q ss_pred EEEc-CCCCChHHHHhhHhcCCccc-ccCccceeEEEEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcc
Q 030192 21 LMVG-LDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
Q Consensus 21 ~i~G-~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (181)
.++| ..|+||||+...+...-... ...+.-... ..+ ....+.++|+|+..... ....+..+|.++++.+.+ ..
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-d~~-~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDL-DLQ-FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-CCC-CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence 4444 48899999877774221111 000000000 000 01178999999865433 344667899999999876 33
Q ss_pred cHHHHHHHHHHHHcCCCCC-CCeEEEEEeC
Q 030192 99 RVVEARDELHRMLNEDELR-DAVLLVFANK 127 (181)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~-~~piivv~nK 127 (181)
++.........+... ... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 444444444333222 112 3456677775
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.41 E-value=0.00015 Score=41.98 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
|.+.|++|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999754
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.38 E-value=0.00016 Score=47.48 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=23.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
...-.++|+|+.|+|||||++.+.+...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3455789999999999999999987654
No 443
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.38 E-value=0.00019 Score=49.27 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=33.2
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHH--HcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030192 86 QGLIFVVDSNDRDRVVEARDELHRM--LNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 143 (181)
|++++|+|+..+.+-. ...+... +.. .++|+++|+||+|+.++....++...+
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 7899999997753321 1222222 222 468999999999998755444444443
No 444
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.38 E-value=0.00085 Score=44.40 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=56.8
Q ss_pred EEcCCCCChHHHHhhHhcCCcccccCccceeEE-EEEECCEEEEEEEcCCCCCcccchhhccccccEEEEEEECCCcccH
Q 030192 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV 100 (181)
Q Consensus 22 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 100 (181)
.-|..|+|||++--.+...-......+.-.+.. ....-.+++.++|+|+... ......+..+|.++++.+.+ ..++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~ 81 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSI 81 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHH
Confidence 446799999998666532111000000000000 0000127789999997543 22345678899999999986 3344
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030192 101 VEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 130 (181)
......+..+.... ...++.+++|+.+.
T Consensus 82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 82 TDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 33333333332221 34567899999974
No 445
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.38 E-value=0.00013 Score=49.36 Aligned_cols=50 Identities=32% Similarity=0.462 Sum_probs=30.9
Q ss_pred EEEEEcCCCCChHHHHhhHhcCCcccccCccceeEEEEEECCEEEEEEEcCCCCCc
Q 030192 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (181)
.+.++|.+|+|||||++++...- ...+.....+......+.+ |++|.+.+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~ 52 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSY 52 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHH
Confidence 58899999999999999998532 1223333334443333333 66665433
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.33 E-value=0.00017 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
++.=-++|+|++|||||||+|-+.+-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455578999999999999999997544
No 447
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.32 E-value=0.00024 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...-+.|+|++|||||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457899999999999999999854
No 448
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.32 E-value=0.00014 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999754
No 449
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.31 E-value=0.00029 Score=52.33 Aligned_cols=31 Identities=29% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHHhhhcccccEEEEEcCCCCChHHHHhhHh
Q 030192 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
++.....+..+-|+|.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3333334567899999999999999998763
No 450
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.30 E-value=0.00021 Score=50.59 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=22.6
Q ss_pred cccccEEEEEcCCCCChHHHHhhHhc
Q 030192 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 14 ~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+++..-|+|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999999965
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0002 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+.=-|.++|++|||||||+|-+.+-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44468999999999999999997643
No 452
>PRK01889 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00037 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
.-+++++|.+|+|||||+|.+.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 3589999999999999999998754
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.29 E-value=0.00022 Score=47.12 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 454
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.27 E-value=0.00022 Score=49.21 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=17.4
Q ss_pred hcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 13 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.....-.+++.|++|+|||+|++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445667899999999999999998854
No 455
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.25 E-value=0.00027 Score=50.06 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+...|+|.|++|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999653
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.25 E-value=0.00032 Score=45.63 Aligned_cols=27 Identities=33% Similarity=0.249 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCCcc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGEIV 43 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~~~ 43 (181)
.-.++++|++|+|||+++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357899999999999999999865543
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.25 E-value=0.00026 Score=46.98 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.|.++|+.|||||||++.+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.24 E-value=0.00027 Score=45.69 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999754
No 459
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.00053 Score=51.32 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=72.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC----cc------ccc------------CccceeEEEE-E--------------
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE----IV------TTI------------PTIGFNVETV-E-------------- 57 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~------~~~------------~~~~~~~~~~-~-------------- 57 (181)
.+..-|+++|-.|+||||-|-.+...- .. .+. ...+..+... .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 457889999999999999988884311 00 000 0111211110 0
Q ss_pred --ECCEEEEEEEcCCCCCcccc-------hhhcc-----ccccEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEE
Q 030192 58 --YKNISFTVWDVGGQDKIRPL-------WRHYF-----QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123 (181)
Q Consensus 58 --~~~~~~~i~D~~g~~~~~~~-------~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiv 123 (181)
-.++.+.++||+|......- ..... ...|-+++++|++..+.--+....+.+...- -=+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence 14688999999995432211 11112 2345588999998654444444455555442 358
Q ss_pred EEeCCCCCCC-CCHhHHHhhhCCC
Q 030192 124 FANKQDLPNA-MNAAEITDKLGLH 146 (181)
Q Consensus 124 v~nK~Dl~~~-~~~~~~~~~~~~~ 146 (181)
++||.|.... =..-.+.+.++.+
T Consensus 290 IlTKlDgtAKGG~il~I~~~l~~P 313 (340)
T COG0552 290 ILTKLDGTAKGGIILSIAYELGIP 313 (340)
T ss_pred EEEecccCCCcceeeeHHHHhCCC
Confidence 8999995432 1344666666665
No 460
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.0003 Score=45.69 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999754
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.21 E-value=0.00065 Score=47.29 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+..-.++++|++||||||+++.+.+.-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999998643
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.21 E-value=0.00031 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-.++++|++|||||||++.+.+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999654
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.21 E-value=0.00049 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.9
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+...+|++.|++|||||||++.+.+.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 467899999999999999999998653
No 464
>PRK03839 putative kinase; Provisional
Probab=97.20 E-value=0.00032 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+|+++|.|||||||+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999643
No 465
>PRK06217 hypothetical protein; Validated
Probab=97.20 E-value=0.00031 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHhhHhcC
Q 030192 18 MRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999643
No 466
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00035 Score=49.78 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHhhHhc
Q 030192 17 EMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999953
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.19 E-value=0.00028 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHhhHhcC
Q 030192 20 ILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~ 40 (181)
|++.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999653
No 468
>PRK08233 hypothetical protein; Provisional
Probab=97.18 E-value=0.00038 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+-|+|.|.+|||||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999753
No 469
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.00038 Score=50.20 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
...++++|+|++|||||+|+-.++...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 567899999999999999999887543
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.17 E-value=0.00031 Score=48.43 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.15 E-value=0.00039 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHh
Q 030192 16 KEMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~ 38 (181)
..-.++++|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34568999999999999999986
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.00035 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHhhHhcCC
Q 030192 20 ILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~~~ 41 (181)
|+++|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999886543
No 473
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00035 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.6
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
+...+|++.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999999963
No 474
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.13 E-value=0.0083 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-+++.||+|+||||.++.+...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5677999999999999999654
No 475
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.13 E-value=0.00043 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCChHHHHhhHh
Q 030192 17 EMRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~ 38 (181)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999997
No 476
>PRK05439 pantothenate kinase; Provisional
Probab=97.13 E-value=0.00053 Score=51.42 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHHhhhcccccEEEEEcCCCCChHHHHhhHhc
Q 030192 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 8 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++........+-|+|.|++||||||+.+.+..
T Consensus 77 fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333446778999999999999999998854
No 477
>PRK06547 hypothetical protein; Provisional
Probab=97.13 E-value=0.0008 Score=46.23 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.6
Q ss_pred HhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 10 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
..+.......|+|.|++||||||+.+.+...
T Consensus 8 ~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 8 ARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455677888999999999999999999653
No 478
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00046 Score=48.87 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+..-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35567889999999999999999754
No 479
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.11 E-value=0.00046 Score=45.51 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998864
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.10 E-value=0.00042 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHhhHhcC
Q 030192 19 RILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~~ 40 (181)
-|+++|++||||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999874
No 481
>PRK14532 adenylate kinase; Provisional
Probab=97.10 E-value=0.00046 Score=48.01 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++|+++|+|||||||+..++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 482
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.09 E-value=0.00038 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhHhc
Q 030192 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~ 39 (181)
|++.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999864
No 483
>PRK14531 adenylate kinase; Provisional
Probab=97.09 E-value=0.00049 Score=47.74 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 484
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00037 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCChHHHHhhHh
Q 030192 18 MRILMVGLDAAGKTTILYKLK 38 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~ 38 (181)
--.+++||+|||||||++.+-
T Consensus 34 ~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHH
Confidence 345899999999999999883
No 485
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.08 E-value=0.00088 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.0
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
.+..-|++.|++|||||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998754
No 486
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.00099 Score=47.58 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHhhhcccccEEEEEcCCCCChHHHHhhHhcC
Q 030192 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 7 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
+..+.+....-.+|++.|+||+|||+|..++...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555556679999999999999999998653
No 487
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00047 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhc
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
..=-|+++|++|+|||||++.+-+
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 445789999999999999999976
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.05 E-value=0.00047 Score=52.35 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.5
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
+...+|+|+|++|||||||++.+...-
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 456899999999999999999998543
No 489
>PRK00625 shikimate kinase; Provisional
Probab=97.04 E-value=0.00059 Score=46.94 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHhhHhc
Q 030192 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 18 ~~i~i~G~~~~GKSsli~~l~~ 39 (181)
++|.++|.+||||||+.+.+..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 490
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.03 E-value=0.00066 Score=47.86 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
....|+++|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999765
No 491
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.03 E-value=0.00056 Score=47.22 Aligned_cols=28 Identities=36% Similarity=0.284 Sum_probs=23.8
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCCc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGEI 42 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~~ 42 (181)
+..-.++++|+.|+|||||++.+.+-..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4556889999999999999999987653
No 492
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.03 E-value=0.00055 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~ 40 (181)
...+|+|.|++||||||+++.+...
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 493
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.02 E-value=0.00054 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhc
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~ 39 (181)
.+.--++++||.|||||||++.+.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445679999999999999999976
No 494
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.01 E-value=0.0069 Score=44.90 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=66.0
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCCcc-----------ccc---------C------------ccceeEEEEEE-----
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-----------TTI---------P------------TIGFNVETVEY----- 58 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-----------~~~---------~------------~~~~~~~~~~~----- 58 (181)
+..--.+.|-=|+|||||+|.++.+... +.. . ..|+-..++..
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvra 135 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRA 135 (391)
T ss_pred ccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHH
Confidence 3344577899999999999999754311 100 0 12222333322
Q ss_pred --------CCEEEEEEEcCCCCCcccchhhcc--------ccccEEEEEEECCC---------cccHHHHHHHHHHHHcC
Q 030192 59 --------KNISFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSND---------RDRVVEARDELHRMLNE 113 (181)
Q Consensus 59 --------~~~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---------~~s~~~~~~~~~~~~~~ 113 (181)
......+++|.|-..-..+...++ -.-|+++-|+|+-. ++++-+ +...++ ..
T Consensus 136 ie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~--EA~~Qi-A~ 212 (391)
T KOG2743|consen 136 IENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLIN--EATRQI-AL 212 (391)
T ss_pred HHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchH--HHHHHH-hh
Confidence 345677889999654333322222 25899999999731 222211 111111 11
Q ss_pred CCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030192 114 DELRDAVLLVFANKQDLPNAMNAAEITDK 142 (181)
Q Consensus 114 ~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 142 (181)
. =-+++||.|+...+.+..+.+.
T Consensus 213 A------D~II~NKtDli~~e~~~~l~q~ 235 (391)
T KOG2743|consen 213 A------DRIIMNKTDLVSEEEVKKLRQR 235 (391)
T ss_pred h------heeeeccccccCHHHHHHHHHH
Confidence 1 2578899999987655555543
No 495
>PRK13949 shikimate kinase; Provisional
Probab=97.01 E-value=0.0006 Score=46.71 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHhhHhc
Q 030192 19 RILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 19 ~i~i~G~~~~GKSsli~~l~~ 39 (181)
+|+++|++||||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 496
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.01 E-value=0.00062 Score=48.52 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.1
Q ss_pred ccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 15 KKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 15 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
...-.++++|+.|+|||||++.+.+..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345578999999999999999998764
No 497
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.00 E-value=0.00061 Score=47.46 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 17 ~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..-|+++|++|||||||+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4568999999999999999997653
No 498
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.00 E-value=0.00057 Score=47.28 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHhhHhc
Q 030192 20 ILMVGLDAAGKTTILYKLKL 39 (181)
Q Consensus 20 i~i~G~~~~GKSsli~~l~~ 39 (181)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
No 499
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.00057 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 16 ~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..=-++++||+|||||||++.+.+-.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458999999999999999997643
No 500
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.99 E-value=0.001 Score=47.45 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=25.5
Q ss_pred HHHHHhhhcccccEEEEEcCCCCChHHHHhhHhcCC
Q 030192 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (181)
Q Consensus 6 ~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 41 (181)
..+.+-+.....-.+++.|+.|+|||||++.+....
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 334444444456788999999999999999997643
Done!